Query 015683
Match_columns 402
No_of_seqs 306 out of 1252
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 08:36:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015683.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015683hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 2E-106 4E-111 810.5 32.1 386 6-401 11-407 (408)
2 KOG2288 Galactosyltransferases 100.0 1.4E-70 3.1E-75 516.8 17.8 264 130-401 8-272 (274)
3 PLN03133 beta-1,3-galactosyltr 100.0 5.8E-54 1.3E-58 453.3 22.2 236 129-401 381-624 (636)
4 KOG2287 Galactosyltransferases 100.0 6.3E-53 1.4E-57 423.9 21.0 246 125-400 86-336 (349)
5 PF01762 Galactosyl_T: Galacto 100.0 5.2E-48 1.1E-52 357.5 16.9 191 147-345 1-195 (195)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 3.2E-33 6.9E-38 278.2 16.3 193 128-339 75-308 (382)
7 PF13334 DUF4094: Domain of un 100.0 6.1E-29 1.3E-33 205.7 5.6 91 12-111 1-95 (95)
8 PF02434 Fringe: Fringe-like; 99.8 4.3E-19 9.4E-24 171.4 13.1 191 134-352 7-210 (252)
9 KOG2246 Galactosyltransferases 99.7 6.3E-16 1.4E-20 156.4 13.6 171 128-345 86-269 (364)
10 PLN03153 hypothetical protein; 99.2 2.7E-10 5.9E-15 118.6 13.8 183 133-350 122-318 (537)
11 KOG3708 Uncharacterized conser 97.2 0.0012 2.7E-08 69.0 9.0 158 134-344 27-194 (681)
12 PF13641 Glyco_tranf_2_3: Glyc 95.4 0.43 9.2E-06 43.9 13.4 114 221-340 77-198 (228)
13 PF01755 Glyco_transf_25: Glyc 94.3 0.96 2.1E-05 41.4 12.6 93 137-246 4-101 (200)
14 TIGR03472 HpnI hopanoid biosyn 93.6 1.4 3E-05 44.9 13.3 161 171-340 70-241 (373)
15 TIGR03469 HonB hopene-associat 93.4 3.6 7.9E-05 42.0 16.1 160 171-338 70-248 (384)
16 cd02525 Succinoglycan_BP_ExoA 92.4 7.5 0.00016 35.7 15.5 160 170-341 30-197 (249)
17 cd04192 GT_2_like_e Subfamily 92.3 4.3 9.2E-05 36.8 13.5 156 172-334 29-190 (229)
18 cd02510 pp-GalNAc-T pp-GalNAc- 92.1 8.5 0.00018 37.4 16.2 128 221-348 74-223 (299)
19 PF00535 Glycos_transf_2: Glyc 90.0 4.9 0.00011 33.8 10.8 135 171-313 27-168 (169)
20 PF13506 Glyco_transf_21: Glyc 89.9 0.61 1.3E-05 42.6 5.3 123 215-343 16-145 (175)
21 cd02520 Glucosylceramide_synth 89.7 15 0.00033 33.1 15.6 133 172-340 31-165 (196)
22 PRK11204 N-glycosyltransferase 88.8 30 0.00065 35.3 17.7 146 189-345 98-255 (420)
23 cd04196 GT_2_like_d Subfamily 88.5 8.4 0.00018 34.4 11.8 116 224-344 73-197 (214)
24 cd06439 CESA_like_1 CESA_like_ 87.1 20 0.00043 33.3 13.9 119 221-345 100-224 (251)
25 cd06421 CESA_CelA_like CESA_Ce 86.7 10 0.00022 34.5 11.5 120 222-347 76-208 (234)
26 cd04187 DPM1_like_bac Bacteria 84.3 8.8 0.00019 33.8 9.5 134 171-315 29-164 (181)
27 cd04185 GT_2_like_b Subfamily 83.9 19 0.00042 32.2 11.7 103 218-349 68-172 (202)
28 PF13632 Glyco_trans_2_3: Glyc 83.3 4.8 0.0001 36.1 7.4 116 233-352 1-126 (193)
29 PF04646 DUF604: Protein of un 83.1 1.7 3.7E-05 42.4 4.5 52 298-349 11-66 (255)
30 cd06423 CESA_like CESA_like is 82.7 10 0.00022 31.7 8.9 95 220-314 68-170 (180)
31 cd04186 GT_2_like_c Subfamily 81.9 30 0.00065 29.2 13.7 80 227-338 71-151 (166)
32 cd04195 GT2_AmsE_like GT2_AmsE 81.7 28 0.0006 30.9 11.8 117 221-344 71-195 (201)
33 cd06420 GT2_Chondriotin_Pol_N 81.3 10 0.00023 33.1 8.7 97 221-338 70-166 (182)
34 cd06433 GT_2_WfgS_like WfgS an 81.0 13 0.00029 32.5 9.3 113 220-339 65-181 (202)
35 cd02526 GT2_RfbF_like RfbF is 80.5 43 0.00094 30.6 12.9 126 220-347 66-201 (237)
36 cd06532 Glyco_transf_25 Glycos 79.1 19 0.00041 30.9 9.4 116 138-319 3-119 (128)
37 cd06435 CESA_NdvC_like NdvC_li 77.0 60 0.0013 29.7 12.8 114 221-340 73-197 (236)
38 COG1215 Glycosyltransferases, 76.0 87 0.0019 31.7 14.7 164 172-345 85-260 (439)
39 PRK14583 hmsR N-glycosyltransf 75.5 1.1E+02 0.0023 31.9 16.5 158 171-344 104-275 (444)
40 TIGR03111 glyc2_xrt_Gpos1 puta 73.9 61 0.0013 33.8 13.2 126 220-348 121-265 (439)
41 cd04179 DPM_DPG-synthase_like 73.7 26 0.00056 30.6 9.0 132 172-314 29-167 (185)
42 COG1216 Predicted glycosyltran 72.1 26 0.00056 34.5 9.4 138 199-339 55-207 (305)
43 cd00761 Glyco_tranf_GTA_type G 65.1 67 0.0015 25.8 9.2 35 220-254 67-101 (156)
44 PF10111 Glyco_tranf_2_2: Glyc 61.5 1.6E+02 0.0035 28.5 13.5 165 169-341 32-211 (281)
45 cd04184 GT2_RfbC_Mx_like Myxoc 57.6 1.4E+02 0.0029 26.4 16.6 111 221-340 74-189 (202)
46 TIGR01556 rhamnosyltran L-rham 56.9 59 0.0013 31.1 8.5 126 221-349 65-200 (281)
47 cd02522 GT_2_like_a GT_2_like_ 56.0 85 0.0018 28.2 9.0 107 222-340 64-175 (221)
48 PRK10714 undecaprenyl phosphat 55.8 67 0.0015 32.1 9.0 134 171-315 38-174 (325)
49 cd06434 GT2_HAS Hyaluronan syn 53.8 1.3E+02 0.0028 27.3 10.0 75 172-256 29-103 (235)
50 cd06437 CESA_CaSu_A2 Cellulose 52.7 1.8E+02 0.004 26.5 15.6 120 221-346 78-209 (232)
51 cd02514 GT13_GLCNAC-TI GT13_GL 49.5 56 0.0012 33.3 7.2 84 220-313 87-174 (334)
52 PHA01631 hypothetical protein 48.0 56 0.0012 30.2 6.2 92 199-316 39-133 (176)
53 cd04188 DPG_synthase DPG_synth 45.1 2.1E+02 0.0046 25.7 9.8 89 170-266 29-119 (211)
54 cd04190 Chitin_synth_C C-termi 42.6 34 0.00074 32.2 4.3 110 229-338 72-206 (244)
55 COG4092 Predicted glycosyltran 38.5 1.2E+02 0.0025 30.4 7.2 80 169-253 36-117 (346)
56 smart00786 SHR3_chaperone ER m 36.1 30 0.00064 32.7 2.6 29 12-40 6-40 (196)
57 PLN02726 dolichyl-phosphate be 35.0 3.7E+02 0.0081 24.9 15.2 157 171-342 40-210 (243)
58 TIGR03030 CelA cellulose synth 34.0 7.1E+02 0.015 27.9 15.6 132 213-348 212-356 (713)
59 PF11119 DUF2633: Protein of u 31.8 53 0.0011 25.1 2.8 28 1-31 1-28 (59)
60 PRK14716 bacteriophage N4 adso 29.5 7.4E+02 0.016 26.7 15.1 107 230-340 158-277 (504)
61 cd06442 DPM1_like DPM1_like re 29.2 4.1E+02 0.009 23.6 9.2 90 223-314 71-167 (224)
62 PF06072 Herpes_US9: Alphaherp 27.6 60 0.0013 24.9 2.5 17 16-32 42-58 (60)
63 PF08229 SHR3_chaperone: ER me 26.8 32 0.00068 32.5 1.1 29 12-40 6-40 (196)
64 PF03452 Anp1: Anp1; InterPro 26.7 3.4E+02 0.0073 27.0 8.3 96 169-265 54-180 (269)
65 PF04666 Glyco_transf_54: N-Ac 25.9 4.9E+02 0.011 26.1 9.5 20 230-249 169-188 (297)
66 PRK05454 glucosyltransferase M 25.4 6.5E+02 0.014 28.3 11.2 198 130-344 121-350 (691)
67 cd06427 CESA_like_2 CESA_like_ 24.8 5.5E+02 0.012 23.6 12.8 121 220-343 74-205 (241)
68 PF03071 GNT-I: GNT-I family; 24.0 8E+02 0.017 26.1 11.0 89 220-317 177-273 (434)
69 cd06438 EpsO_like EpsO protein 23.8 4.9E+02 0.011 22.7 10.1 88 221-312 71-169 (183)
70 PF13704 Glyco_tranf_2_4: Glyc 22.5 3.9E+02 0.0084 21.0 6.8 47 200-247 41-88 (97)
71 cd04191 Glucan_BSP_ModH Glucan 21.8 3.7E+02 0.008 25.9 7.5 120 211-338 75-217 (254)
72 PF09964 DUF2198: Uncharacteri 20.5 67 0.0014 25.7 1.7 22 13-34 46-67 (74)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=2.1e-106 Score=810.52 Aligned_cols=386 Identities=66% Similarity=1.136 Sum_probs=358.4
Q ss_pred CCcccccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCccccccccchhhcccccchhc-------cCCchHHHHHHHh
Q 015683 6 STTTIISTKWIPFVCLFCFALGILFSNLTWNPPESDGRPSLNVRRREQQVAVASTDCAKK-------AFQDQDVAKEVLK 78 (402)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 78 (402)
++|+.||+||+++||++|||+|+|||||||..||+++ +..++.+++++++++++||+.+ +++++|+|+||++
T Consensus 11 ~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 89 (408)
T PLN03193 11 SSRSVVSRKWTLLLCLGCFCAGMLFTDRMWTIPESKG-ISRTTVTEAERLKLVSEGCDPKTLYQKEVKRDSKDIIGEVSK 89 (408)
T ss_pred cccccccHHHHHHHHHHHHHHHHhhccccccCCcccc-ccccccchhhhhhhhccccccccccccccccchhHHHHHHhh
Confidence 4588999999999999999999999999999999887 5566778899999999999843 3489999999999
Q ss_pred hhcccccCCcccchhhhhhHHHhhhhhcccccCCCCCCCCCcccc----CCCCCCCCCeEEEEEEECCCCCHHHHHHHHH
Q 015683 79 TRGAIHDGSVESDRTLDKTIGQLQMELAASRSGREMPGLESSAAN----ASTNSRRPKVFVVIGINTAFSSRKRRDSVRD 154 (402)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~llI~V~S~p~~~~rR~aIR~ 154 (402)
||++|+ +|||+|+.||||||+|++.++.. +++.|.+ ......+++++|||+|+|+|+|++||++||+
T Consensus 90 t~~~~~--------~~~~~~~~le~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AIR~ 160 (408)
T PLN03193 90 THNAIQ--------TLDKTISNLEMELAAARAAQESI-LNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRA 160 (408)
T ss_pred HHHHHH--------HHhhhhhHHhHHHHHHHhhhhhh-ccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHHHH
Confidence 999999 99999999999999999977654 5554543 1234567789999999999999999999999
Q ss_pred hhccCchhhhhhhccCceEEEEEeecCCCCchhhHHhhHHHHhhCCCEEEecccccCCCchhHHHHHHHHHHhcCCceEE
Q 015683 155 TWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFY 234 (402)
Q Consensus 155 TW~~~~~~l~~l~~~~~i~~~FvlG~s~~~~~~~~~~I~~E~~~~~DIL~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fv 234 (402)
|||++++.+.+++.+.+|+++||||++.++++.++++|++|+++|||||++||+|+|.|||+||+++|+||.++|+|+||
T Consensus 161 TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~ 240 (408)
T PLN03193 161 TWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFY 240 (408)
T ss_pred HHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEE
Confidence 99998876666777789999999999986678899999999999999999999999999999999999999999999999
Q ss_pred EEecCceEecHHHHHHHHhhcCCCCCeEEEEeecCcccccCCCccccCCccccCCCCCccccccCCCeeeeCHHHHHHHH
Q 015683 235 VKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYIS 314 (402)
Q Consensus 235 lKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~~~pv~rd~~~Kwyvp~~w~f~y~~~~Yp~Y~~G~gYvLS~dla~~I~ 314 (402)
||+|||+|||+++|+.+|..++.++++|+|||+++|++.+++.|||+|++|+|+++++.|||||+|+|||||+|+|++|+
T Consensus 241 mK~DDDvfVnv~~L~~~L~~~~~~~rlYiG~m~~gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~ 320 (408)
T PLN03193 241 VKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYIS 320 (408)
T ss_pred EEcCCCceEcHHHHHHHHHhcCCCCCEEEEecccCccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHH
Confidence 99999999999999999998877788999999988887778889999999999999999999999999999999999999
Q ss_pred HhCCCcCCCCcChHHHHHHHhcCCCeeecCCCceecCCCCcccccccCCcccccccccccccchhhHHHHHhcccCccch
Q 015683 315 INQPILHKFANEDVSLGSWFIGLEVEHIDDRNMCCQTPPDCEWKAQAGNVCVASFDWSCSGICKSVEKIRSVHEKCGEED 394 (402)
Q Consensus 315 ~~~~~l~~~~~EDV~vG~~l~~L~v~~~d~~~F~~~~~~~~e~k~~~~~~C~~~f~~~~sgi~~~~~~l~~vH~~~~~~~ 394 (402)
.+...++.|++|||+||+||.+|+|+|+|+++|||+++|+|+||++++++|+++|||+|||||++.+||.++|++|+++.
T Consensus 321 ~n~~~L~~y~~EDV~vG~Wl~~L~V~~vdd~~fcc~~~~~C~~~~~~~~~c~~~~~~~csg~c~~~~~~~~~h~~c~~~~ 400 (408)
T PLN03193 321 INQHVLHKYANEDVSLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGNICVASFDWSCSGICRSADRIKEVHRRCGEGE 400 (408)
T ss_pred hChhhhcccCcchhhhhhHhccCCceeeecccccCCCCccccccccCCCeeEEEecccCcccCCHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccc
Q 015683 395 SAIWGVR 401 (402)
Q Consensus 395 ~~~W~~~ 401 (402)
.++|+++
T Consensus 401 ~~~~~~~ 407 (408)
T PLN03193 401 NALWSAT 407 (408)
T ss_pred ccceeec
Confidence 9999975
No 2
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-70 Score=516.75 Aligned_cols=264 Identities=67% Similarity=1.104 Sum_probs=255.0
Q ss_pred CCCeEEEEEEECCCCCHHHHHHHHHhhccCchhhhhhhccCceEEEEEeecCCCCchhhHHhhHHHHhhCCCEEEec-cc
Q 015683 130 RPKVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLE-HI 208 (402)
Q Consensus 130 ~~~~~llI~V~S~p~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~~~FvlG~s~~~~~~~~~~I~~E~~~~~DIL~ld-f~ 208 (402)
+++++++|+|.|++++.+||+++|+||+++++.+++++++++|.++|+||+. +.+++++++|++|+++|+|+|.+| ++
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~-~~g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTA-TLGASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccC-CccHHHHHHHHHHHHhcCCeEeechhH
Confidence 7899999999999999999999999999999999999999999999999994 457899999999999999999999 99
Q ss_pred ccCCCchhHHHHHHHHHHhcCCceEEEEecCceEecHHHHHHHHhhcCCCCCeEEEEeecCcccccCCCccccCCccccC
Q 015683 209 EGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFG 288 (402)
Q Consensus 209 Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~~~pv~rd~~~Kwyvp~~w~f~ 288 (402)
|+|.+||.||+.+|.+|.++|+++||+|+|||+|||++.|...|.+++.++++|+|||++|||+.++++|||+|+ |+|+
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe-Wkfg 165 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE-WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh-hhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCCCccccccCCCeeeeCHHHHHHHHHhCCCcCCCCcChHHHHHHHhcCCCeeecCCCceecCCCCcccccccCCccccc
Q 015683 289 EEGNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLEVEHIDDRNMCCQTPPDCEWKAQAGNVCVAS 368 (402)
Q Consensus 289 y~~~~Yp~Y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~~~d~~~F~~~~~~~~e~k~~~~~~C~~~ 368 (402)
+.++ |+||+.|++|+||++||.+|+.|+..++.|.+|||++|.|+.+|+|+|+|++++||+++ |++++++|.++
T Consensus 166 ~~g~-YfrhA~G~~YvlS~dLa~yi~in~~lL~~y~nEDVSlGaW~~gldV~h~dd~rlC~~~~-----~~~~~~~~~~~ 239 (274)
T KOG2288|consen 166 DNGN-YFRHATGGGYVLSKDLATYISINRQLLHKYANEDVSLGAWMIGLDVEHVDDPRLCCSTP-----KALAGMVCAAS 239 (274)
T ss_pred cccc-cchhccCceEEeeHHHHHHHHHhHHHHHhhccCCcccceeeeeeeeeEecCCcccccch-----hhhccceeeee
Confidence 9887 99999999999999999999999999999999999999999999999999999999764 67889999999
Q ss_pred ccccccccchhhHHHHHhcccCccchhhhcccc
Q 015683 369 FDWSCSGICKSVEKIRSVHEKCGEEDSAIWGVR 401 (402)
Q Consensus 369 f~~~~sgi~~~~~~l~~vH~~~~~~~~~~W~~~ 401 (402)
|+|+|+|||++..||..+|.+|.++..+.|...
T Consensus 240 ~~~kcsglC~~~~rm~~~h~~~~~~~~~~~~~~ 272 (274)
T KOG2288|consen 240 FDWKCSGLCKSEDRMLEVHKYDWEGKPATCCSR 272 (274)
T ss_pred ecccccccCchHHHHhHHHHhhccCCCcccCcc
Confidence 999999999999999999999999999999764
No 3
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=5.8e-54 Score=453.29 Aligned_cols=236 Identities=22% Similarity=0.340 Sum_probs=208.4
Q ss_pred CCCCeEEEEEEECCCCCHHHHHHHHHhhccCchhhhhhhccCceEEEEEeecCCCCchhhHHhhHHHHhhCCCEEEeccc
Q 015683 129 RRPKVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHI 208 (402)
Q Consensus 129 ~~~~~~llI~V~S~p~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~~~FvlG~s~~~~~~~~~~I~~E~~~~~DIL~ldf~ 208 (402)
++++++|||+|+|+|+|++||+|||+|||+... ..+..++++|++|.+. ++.++++|++|+++||||||+||.
T Consensus 381 ~~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~-----~~~~~v~~rFvVG~s~--n~~l~~~L~~Ea~~ygDIIq~dF~ 453 (636)
T PLN03133 381 PKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDA-----VRSGAVAVRFFVGLHK--NQMVNEELWNEARTYGDIQLMPFV 453 (636)
T ss_pred CCCceEEEEEEeCCcccHHHHHHHHHhhccccc-----cCCCceEEEEEEecCC--cHHHHHHHHHHHHHcCCeEEEeee
Confidence 356799999999999999999999999999642 2345689999999986 467899999999999999999999
Q ss_pred ccCCCchhHHHHHHHHHHhcCCceEEEEecCceEecHHHHHHHHhhcCCCCCeEEEEee-cCcccccCCCccccCCcccc
Q 015683 209 EGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMK-SGPVLSQKNVKYHEPEYWKF 287 (402)
Q Consensus 209 Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~-~~pv~rd~~~Kwyvp~~w~f 287 (402)
|+|+|||+||++++.|+..|++|+|+||+|||+|||+++|+++|......+++|+|++. ...|+|++.+|||+|.+
T Consensus 454 DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~--- 530 (636)
T PLN03133 454 DYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPE--- 530 (636)
T ss_pred chhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHH---
Confidence 99999999999999999989999999999999999999999999887667789999997 46788999999999976
Q ss_pred CCCCCccccccCCCeeeeCHHHHHHHHHhC--CCcCCCCcChHHHHHHHh-----cCCCeeecCCCceecCCCCcccccc
Q 015683 288 GEEGNKYFRHATGQIYAISKDLATYISINQ--PILHKFANEDVSLGSWFI-----GLEVEHIDDRNMCCQTPPDCEWKAQ 360 (402)
Q Consensus 288 ~y~~~~Yp~Y~~G~gYvLS~dla~~I~~~~--~~l~~~~~EDV~vG~~l~-----~L~v~~~d~~~F~~~~~~~~e~k~~ 360 (402)
.||++.|||||+|+|||||+++|++|+.++ ..++.|++||||+|+|+. ++.+.+.++.+||+
T Consensus 531 eyp~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~~----------- 599 (636)
T PLN03133 531 EWPEETYPPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYN----------- 599 (636)
T ss_pred HCCCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCcccC-----------
Confidence 678999999999999999999999999864 579999999999999985 55677777777753
Q ss_pred cCCcccccccccccccchhhHHHHHhcccCccchhhhcccc
Q 015683 361 AGNVCVASFDWSCSGICKSVEKIRSVHEKCGEEDSAIWGVR 401 (402)
Q Consensus 361 ~~~~C~~~f~~~~sgi~~~~~~l~~vH~~~~~~~~~~W~~~ 401 (402)
+.|. ..++.+|...|++|..+|+.+
T Consensus 600 --~~C~--------------~~~i~~H~~sP~eM~~lW~~l 624 (636)
T PLN03133 600 --EGCK--------------DGYVVAHYQSPREMLCLWQKL 624 (636)
T ss_pred --CcCC--------------CCeEEEecCCHHHHHHHHHHH
Confidence 2454 235779999999999999864
No 4
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.3e-53 Score=423.95 Aligned_cols=246 Identities=23% Similarity=0.314 Sum_probs=220.8
Q ss_pred CCCCCCC-CeEEEEEEECCCCCHHHHHHHHHhhccCchhhhhhhccCceEEEEEeecCCCCchhhHHhhHHHHhhCCCEE
Q 015683 125 STNSRRP-KVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFL 203 (402)
Q Consensus 125 ~~~~~~~-~~~llI~V~S~p~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~~~FvlG~s~~~~~~~~~~I~~E~~~~~DIL 203 (402)
++.++.. .++++|+|+|+++|++||++||+|||++.. ..+..++++|++|.+++.+ .++++|.+|++.|||||
T Consensus 86 p~~~~~~~~~~lLl~V~S~~~~farR~aiR~TW~~~~~-----v~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi 159 (349)
T KOG2287|consen 86 PEICDPDRPPELLLLVKSAPDNFARRNAIRKTWGNENN-----VRGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDII 159 (349)
T ss_pred ChhhcCCCCceEEEEEecCCCCHHHHHHHHHHhcCccc-----cCCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEE
Confidence 4444444 489999999999999999999999999874 3577899999999998544 66899999999999999
Q ss_pred EecccccCCCchhHHHHHHHHHHh-cCCceEEEEecCceEecHHHHHHHHhhc-CCCCCeEEEEee-cCcccccCCCccc
Q 015683 204 RLEHIEGYHELSAKTKIFFSTAVA-KWDADFYVKVDDDVHVNLGMLATTLSRH-RSKPRVYIGCMK-SGPVLSQKNVKYH 280 (402)
Q Consensus 204 ~ldf~Dsy~nLt~Kt~~~~~wa~~-~~~a~fvlKvDDDvfVnl~~L~~~L~~~-~~~~~lY~G~~~-~~pv~rd~~~Kwy 280 (402)
++||.|+|.|||+||++++.|+.+ |++|+|++|+|||+|||+++|+.+|..+ .+.+++|.|.+. ..+|+|++.+|||
T Consensus 160 ~~df~Dty~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~Kwy 239 (349)
T KOG2287|consen 160 QVDFEDTYFNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWY 239 (349)
T ss_pred EEecccchhchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCc
Confidence 999999999999999999999998 8899999999999999999999999999 788899999986 4689999999999
Q ss_pred cCCccccCCCCCccccccCCCeeeeCHHHHHHHHHhCCCcCCCCcChHHHHHHHhcC-CCeeecCCCceecCCCCccccc
Q 015683 281 EPEYWKFGEEGNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGL-EVEHIDDRNMCCQTPPDCEWKA 359 (402)
Q Consensus 281 vp~~w~f~y~~~~Yp~Y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L-~v~~~d~~~F~~~~~~~~e~k~ 359 (402)
+|+. .||.+.|||||+|+|||||+++|+.|+.++.+++.+++|||++|+|++.. |+.++++..|... +
T Consensus 240 Vp~~---~y~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~~~~~-------~- 308 (349)
T KOG2287|consen 240 VPES---EYPCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHPGFFEI-------P- 308 (349)
T ss_pred cCHH---HCCCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCcccccc-------c-
Confidence 9987 88999999999999999999999999999999999999999999999877 9999988875321 1
Q ss_pred ccCCcccccccccccccchhhHHHHHhcccCccchhhhccc
Q 015683 360 QAGNVCVASFDWSCSGICKSVEKIRSVHEKCGEEDSAIWGV 400 (402)
Q Consensus 360 ~~~~~C~~~f~~~~sgi~~~~~~l~~vH~~~~~~~~~~W~~ 400 (402)
...++|. +++++.+|...|.+|..+|+.
T Consensus 309 ~~~~~~~-------------~~~~~~~H~~~p~e~~~~w~~ 336 (349)
T KOG2287|consen 309 LSFDPCC-------------YRDLLAVHRLSPNEMIYLWKK 336 (349)
T ss_pred ccCCCCc-------------ccceEEEecCCHHHHHHHHHH
Confidence 1235565 789999999999999999975
No 5
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=5.2e-48 Score=357.46 Aligned_cols=191 Identities=29% Similarity=0.399 Sum_probs=172.7
Q ss_pred HHHHHHHHhhccCchhhhhhhccCceEEEEEeecCCCCchhhHHhhHHHHhhCCCEEEecccccCCCchhHHHHHHHHHH
Q 015683 147 KRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAV 226 (402)
Q Consensus 147 ~rR~aIR~TW~~~~~~l~~l~~~~~i~~~FvlG~s~~~~~~~~~~I~~E~~~~~DIL~ldf~Dsy~nLt~Kt~~~~~wa~ 226 (402)
+||++||+|||+... ....+++++||+|.+...+..++++|.+|+++|+|||++||.|+|.|||+||+++|+|+.
T Consensus 1 ~rR~~IR~TW~~~~~-----~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~ 75 (195)
T PF01762_consen 1 ERRQAIRETWGNQRN-----FKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWAS 75 (195)
T ss_pred ChHHHHHHHHhcccc-----cCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHH
Confidence 599999999999863 245889999999999855678889999999999999999999999999999999999999
Q ss_pred h-cCCceEEEEecCceEecHHHHHHHHhhc--CC-CCCeEEEEeecCcccccCCCccccCCccccCCCCCccccccCCCe
Q 015683 227 A-KWDADFYVKVDDDVHVNLGMLATTLSRH--RS-KPRVYIGCMKSGPVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQI 302 (402)
Q Consensus 227 ~-~~~a~fvlKvDDDvfVnl~~L~~~L~~~--~~-~~~lY~G~~~~~pv~rd~~~Kwyvp~~w~f~y~~~~Yp~Y~~G~g 302 (402)
+ |++++|++|+|||+|||+++|.++|... .. ...+|.|++..++|.|++.+|||+|+. .|+.+.|||||+|+|
T Consensus 76 ~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~---~y~~~~yP~y~~G~~ 152 (195)
T PF01762_consen 76 KHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEE---EYPDDYYPPYCSGGG 152 (195)
T ss_pred hhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeee---ecccccCCCcCCCCe
Confidence 8 4579999999999999999999999987 23 344555556678899999999999987 678899999999999
Q ss_pred eeeCHHHHHHHHHhCCCcCCCCcChHHHHHHHhcCCCeeecCC
Q 015683 303 YAISKDLATYISINQPILHKFANEDVSLGSWFIGLEVEHIDDR 345 (402)
Q Consensus 303 YvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~~~d~~ 345 (402)
|+||+++|+.|+.++..++.+++|||++|+|+.++||+++|++
T Consensus 153 yvls~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 153 YVLSSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred EEecHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCccCCC
Confidence 9999999999999999999999999999999999999999864
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=100.00 E-value=3.2e-33 Score=278.20 Aligned_cols=193 Identities=20% Similarity=0.278 Sum_probs=159.8
Q ss_pred CCCCCeEEEEEEECCCCC--HHHHHHHHHhhccCch-hhhhhhccCceEEEEEeecCCCCchhhHHhhHHHHhhCCCEEE
Q 015683 128 SRRPKVFVVIGINTAFSS--RKRRDSVRDTWMPQGE-KLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLR 204 (402)
Q Consensus 128 ~~~~~~~llI~V~S~p~~--~~rR~aIR~TW~~~~~-~l~~l~~~~~i~~~FvlG~s~~~~~~~~~~I~~E~~~~~DIL~ 204 (402)
-..+..++++||.|..++ +.||++.|+||.+-.. +.+.+.-...+.++|++|..++.+.+++++|.+|+++|||||+
T Consensus 75 w~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVi 154 (382)
T PTZ00210 75 WKAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIIT 154 (382)
T ss_pred hccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEE
Confidence 457788999999999988 8999999999988653 2222223456788999999998778999999999999999999
Q ss_pred ecc------------------cccCCCchhHHHHHHHHHHh-cCCceEEEEecCceEecHHHHHHHHhhcCCCCCeEEEE
Q 015683 205 LEH------------------IEGYHELSAKTKIFFSTAVA-KWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGC 265 (402)
Q Consensus 205 ldf------------------~Dsy~nLt~Kt~~~~~wa~~-~~~a~fvlKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~ 265 (402)
+|| .|++.|+|+||+++|+|+.+ |++++|++|+|||+|||+++++++|+.. ++..+|+|.
T Consensus 155 lpf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G~ 233 (382)
T PTZ00210 155 LPTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMGR 233 (382)
T ss_pred EecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEEe
Confidence 999 77788999999999999998 5799999999999999999999999765 456699998
Q ss_pred eecC-cccccCCCccccCCccccCCCCCccccccCCCeeeeCHHHHHHHHHhCCC--c---------------CCCCcCh
Q 015683 266 MKSG-PVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISINQPI--L---------------HKFANED 327 (402)
Q Consensus 266 ~~~~-pv~rd~~~Kwyvp~~w~f~y~~~~Yp~Y~~G~gYvLS~dla~~I~~~~~~--l---------------~~~~~ED 327 (402)
+... .+. .+.+||||+|+||+||+|+|+.|+...+. + -.+.+||
T Consensus 234 v~~~~~p~------------------Rd~~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~ED 295 (382)
T PTZ00210 234 YNYYNRIW------------------RRNQLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYED 295 (382)
T ss_pred eCCCCccc------------------cCCCCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCchH
Confidence 7531 111 12479999999999999999999886432 2 2457999
Q ss_pred HHHHHHH-hcCCC
Q 015683 328 VSLGSWF-IGLEV 339 (402)
Q Consensus 328 V~vG~~l-~~L~v 339 (402)
+.+|.++ .++..
T Consensus 296 iMvG~vLr~~~k~ 308 (382)
T PTZ00210 296 VMVGMILREKVVY 308 (382)
T ss_pred HHHHHHHHHhcCc
Confidence 9999999 45543
No 7
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=99.95 E-value=6.1e-29 Score=205.70 Aligned_cols=91 Identities=42% Similarity=0.707 Sum_probs=82.6
Q ss_pred cchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcc-ccccccchhhcccccchhcc---CCchHHHHHHHhhhcccccCC
Q 015683 12 STKWIPFVCLFCFALGILFSNLTWNPPESDGRPSL-NVRRREQQVAVASTDCAKKA---FQDQDVAKEVLKTRGAIHDGS 87 (402)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 87 (402)
|+||+++||+||||+|+|||||||..||+++ +.+ ..+.++++++++++||+++. ++.+|+|+||+|||++||
T Consensus 1 S~kw~l~Lc~~SF~~G~lft~R~W~~pe~~~-~~~~~~~~~~~~l~l~s~~c~~k~~~~~~~~di~~eV~kTh~aIq--- 76 (95)
T PF13334_consen 1 SRKWVLLLCIASFCAGMLFTNRMWTVPESKE-ISRRSSQDAEERLQLVSEDCDPKKLKESDQRDIMGEVSKTHEAIQ--- 76 (95)
T ss_pred CchHHHHHHHHHHHHHHHHhcccccCCcccc-chhhhccccccccccccccccccccccCCccchhHHHHHHHHHHH---
Confidence 6799999999999999999999999999987 444 35578999999999999654 788999999999999999
Q ss_pred cccchhhhhhHHHhhhhhcccccC
Q 015683 88 VESDRTLDKTIGQLQMELAASRSG 111 (402)
Q Consensus 88 ~~~~~~~~~~~~~l~~el~~~~~~ 111 (402)
+|||+||+||||||+||++
T Consensus 77 -----~LdKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 77 -----SLDKTISSLEMELAAARAE 95 (95)
T ss_pred -----HHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999973
No 8
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.80 E-value=4.3e-19 Score=171.45 Aligned_cols=191 Identities=18% Similarity=0.216 Sum_probs=99.4
Q ss_pred EEEEEEECCCCC-HHHHHHHHHhhccCchhhhhhhccCceEEEEE-eecCCCCchhhHHhhHHHHhhCCCEEEecccccC
Q 015683 134 FVVIGINTAFSS-RKRRDSVRDTWMPQGEKLIQLEREKGIIIRFM-IGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGY 211 (402)
Q Consensus 134 ~llI~V~S~p~~-~~rR~aIR~TW~~~~~~l~~l~~~~~i~~~Fv-lG~s~~~~~~~~~~I~~E~~~~~DIL~ldf~Dsy 211 (402)
.++|+|+|++++ ..|-.+|++||++.+.. ..|+ .... +. .+..+ ...+++.-+...++
T Consensus 7 dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~-----------~~~ifsd~~---d~----~l~~~--~~~~l~~~~~~~~~ 66 (252)
T PF02434_consen 7 DIFIAVKTTKKFHKTRAPAIKQTWAKRCNK-----------QTFIFSDAE---DP----SLPTV--TGVHLVNPNCDAGH 66 (252)
T ss_dssp GEEEEEE--GGGTTTTHHHHHHTGGGGSGG-----------GEEEEESS-----H----HHHHH--HGGGEEE-------
T ss_pred cEEEEEEeCHHHHHHHHHHHHHHHHhhcCC-----------ceEEecCcc---cc----ccccc--cccccccCCCcchh
Confidence 689999999975 46779999999998752 1343 3222 12 22222 22345555555554
Q ss_pred CCchhHHHHHHHHHHh-cCCceEEEEecCceEecHHHHHHHHhhcCCCCCeEEEEeecCcccccC-CCccccCCccccCC
Q 015683 212 HELSAKTKIFFSTAVA-KWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQK-NVKYHEPEYWKFGE 289 (402)
Q Consensus 212 ~nLt~Kt~~~~~wa~~-~~~a~fvlKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~~~pv~rd~-~~Kwyvp~~w~f~y 289 (402)
...+++.++.+.+... ..+++|++++|||+||++++|+++|..+++.+++|+|+.....+.... ......+
T Consensus 67 ~~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~~~~~~~~------- 139 (252)
T PF02434_consen 67 CRKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIHRFNPNKS------- 139 (252)
T ss_dssp ------HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE-----------------------
T ss_pred hHHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeecccccccc-------
Confidence 4444555544444332 368999999999999999999999999999999999986422111110 0000001
Q ss_pred CCCcccccc-CCCeeeeCHHHHHHHHHh---CCCcCCC----CcChHHHHHHHhc-CCCeeecCCCceecCC
Q 015683 290 EGNKYFRHA-TGQIYAISKDLATYISIN---QPILHKF----ANEDVSLGSWFIG-LEVEHIDDRNMCCQTP 352 (402)
Q Consensus 290 ~~~~Yp~Y~-~G~gYvLS~dla~~I~~~---~~~l~~~----~~EDV~vG~~l~~-L~v~~~d~~~F~~~~~ 352 (402)
...-..|+ +|+||+||+.++++|... ....... ..||+.+|.|+.. |||..++.+.|+...+
T Consensus 140 -~~~~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~~ 210 (252)
T PF02434_consen 140 -KDSGFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHLE 210 (252)
T ss_dssp -------EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SSS
T ss_pred -CcCceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccCc
Confidence 11222344 479999999999999542 2222222 3899999999988 9999999999975433
No 9
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.66 E-value=6.3e-16 Score=156.43 Aligned_cols=171 Identities=23% Similarity=0.303 Sum_probs=132.4
Q ss_pred CCCCCeEEEEEEECCCCCHH-HHHHHHHhhccCchhhhhhhccCceEEEEEe---ecCCCCchhhHHhhHHHHhhCCCEE
Q 015683 128 SRRPKVFVVIGINTAFSSRK-RRDSVRDTWMPQGEKLIQLEREKGIIIRFMI---GHSATSNSILDKAIDSEDAQHKDFL 203 (402)
Q Consensus 128 ~~~~~~~llI~V~S~p~~~~-rR~aIR~TW~~~~~~l~~l~~~~~i~~~Fvl---G~s~~~~~~~~~~I~~E~~~~~DIL 203 (402)
-..++..+++.|+|++.+.. |-+++-+||++.++. ..|+- .... ..+. .|
T Consensus 86 ~l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~-----------~~f~s~~~s~~~--------------~~f~-~v 139 (364)
T KOG2246|consen 86 WLSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDK-----------GIFFSPTLSKDD--------------SRFP-TV 139 (364)
T ss_pred ccCCCceEEEEEEecCcCceeehhhhhcccccccCc-----------ceecCccCCCCC--------------CcCc-ee
Confidence 34677899999999987665 667999999999852 34544 3321 1122 34
Q ss_pred EecccccCCCchhHHHHHHHHHHhc--CCceEEEEecCceEecHHHHHHHHhhcCCCCCeEEEEeecCcccccCCCcccc
Q 015683 204 RLEHIEGYHELSAKTKIFFSTAVAK--WDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHE 281 (402)
Q Consensus 204 ~ldf~Dsy~nLt~Kt~~~~~wa~~~--~~a~fvlKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~~~pv~rd~~~Kwyv 281 (402)
..+..|+|+++..||...|+++..+ .+++|++|+|||||+.++||..+|..+++.+++|+|+.. +-|.
T Consensus 140 ~~~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~----------~~~~ 209 (364)
T KOG2246|consen 140 YYNLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRS----------KSYF 209 (364)
T ss_pred eccCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEecccc----------cccc
Confidence 6788999999999999999999864 599999999999999999999999999999999999853 1121
Q ss_pred CCccccCCCCCccccccCCCeeeeCHHHHHHHHHhC-----CCcCCCC--cChHHHHHHHhcCCCeeecCC
Q 015683 282 PEYWKFGEEGNKYFRHATGQIYAISKDLATYISINQ-----PILHKFA--NEDVSLGSWFIGLEVEHIDDR 345 (402)
Q Consensus 282 p~~w~f~y~~~~Yp~Y~~G~gYvLS~dla~~I~~~~-----~~l~~~~--~EDV~vG~~l~~L~v~~~d~~ 345 (402)
. +.|- .+|+||++|+.+.+.+++.. .....++ .||+-||.||+.+||...|.+
T Consensus 210 ~---------~~y~--~g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV~~~d~~ 269 (364)
T KOG2246|consen 210 Q---------NGYS--SGGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGVPATDER 269 (364)
T ss_pred c---------cccc--cCCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCCCccCch
Confidence 1 1222 47899999999988877642 1233444 899999999999999988763
No 10
>PLN03153 hypothetical protein; Provisional
Probab=99.18 E-value=2.7e-10 Score=118.55 Aligned_cols=183 Identities=18% Similarity=0.141 Sum_probs=113.6
Q ss_pred eEEEEEEECCCCCH-HHHHHHHHhhccCchhhhhhhccCceEEEEEeecCCCCchhhHHhhHHHHhhCCCEEE-ec---c
Q 015683 133 VFVVIGINTAFSSR-KRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLR-LE---H 207 (402)
Q Consensus 133 ~~llI~V~S~p~~~-~rR~aIR~TW~~~~~~l~~l~~~~~i~~~FvlG~s~~~~~~~~~~I~~E~~~~~DIL~-ld---f 207 (402)
-.++++|.++.+.. +|+..|+.+|.+... . ..+|+.....+. ..+..+ --|-. .| |
T Consensus 122 ~hIvF~I~~s~~~w~~R~~yik~wW~p~~~--------r--g~v~ld~~~~~~--~~~~~~-------P~i~is~d~s~f 182 (537)
T PLN03153 122 NHIMFGIAGSSQLWKRRKELVRLWWRPNQM--------R--GHVWLEEQVSPE--EGDDSL-------PPIMVSEDTSRF 182 (537)
T ss_pred ccEEEEEEEchhhhhhhhhhhhhhcCcccc--------e--eEEEecccCCCC--CCcCCC-------CCEEeCCCcccc
Confidence 47888888877654 678999999998531 1 145554433210 000000 00111 01 1
Q ss_pred c-ccCCCchhHHH--HHHHHHHh--cCCceEEEEecCceEecHHHHHHHHhhcCCCCCeEEEEeecCcccccCCCccccC
Q 015683 208 I-EGYHELSAKTK--IFFSTAVA--KWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEP 282 (402)
Q Consensus 208 ~-Dsy~nLt~Kt~--~~~~wa~~--~~~a~fvlKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~~~pv~rd~~~Kwyvp 282 (402)
. +...+...... .+...+.. .++++|++++|||+|+.+++|+..|..++++++.|+|..... .+
T Consensus 183 ~y~~~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~-----------~~ 251 (537)
T PLN03153 183 RYTNPTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSES-----------HS 251 (537)
T ss_pred cccCCCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccc-----------cc
Confidence 0 11122222211 12333333 489999999999999999999999999999999999975310 00
Q ss_pred CccccCCCCCccccccCCCeeeeCHHHHHHHHHhCCC-cCC---CCcChHHHHHHHhcCCCeeecCCCceec
Q 015683 283 EYWKFGEEGNKYFRHATGQIYAISKDLATYISINQPI-LHK---FANEDVSLGSWFIGLEVEHIDDRNMCCQ 350 (402)
Q Consensus 283 ~~w~f~y~~~~Yp~Y~~G~gYvLS~dla~~I~~~~~~-l~~---~~~EDV~vG~~l~~L~v~~~d~~~F~~~ 350 (402)
..-.|. |--.-+|+||+||+.+++.|...... ... ..-+|.-+|.|+..+||...+.++|...
T Consensus 252 qn~~f~-----~~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~ 318 (537)
T PLN03153 252 ANSYFS-----HNMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQW 318 (537)
T ss_pred cccccc-----cccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCcccc
Confidence 000011 11124799999999999999875322 222 2358888999999999999988998653
No 11
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.0012 Score=69.01 Aligned_cols=158 Identities=16% Similarity=0.186 Sum_probs=104.2
Q ss_pred EEEEEEECCCCCHHHHHHHHHhhccCchhhhhhhccCceEEEEEeecCCCCchhhHHhhHHHHhhCCCEEEecccccCCC
Q 015683 134 FVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHE 213 (402)
Q Consensus 134 ~llI~V~S~p~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~~~FvlG~s~~~~~~~~~~I~~E~~~~~DIL~ldf~Dsy~n 213 (402)
+|+++|+|. ..---+|-.|=+..-. ++.|+++.+.-. .|.-++..+--|..
T Consensus 27 rl~~aVmte---~tlA~a~NrT~ahhvp-----------rv~~F~~~~~i~---------------~~~a~~~~vs~~d~ 77 (681)
T KOG3708|consen 27 RLMAAVMTE---STLALAINRTLAHHVP-----------RVHLFADSSRID---------------NDLAQLTNVSPYDL 77 (681)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHhhcc-----------eeEEeecccccc---------------ccHhhccccCcccc
Confidence 567777772 2556677777665532 467777776422 12222333333333
Q ss_pred chhHHH-HHHHHHHhc--CCceEEEEecCceEecHHHHHHHHhhcCCCCCeEEEEeecCcccccCCCccccCCccccCCC
Q 015683 214 LSAKTK-IFFSTAVAK--WDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFGEE 290 (402)
Q Consensus 214 Lt~Kt~-~~~~wa~~~--~~a~fvlKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~~~pv~rd~~~Kwyvp~~w~f~y~ 290 (402)
-..|+. +.++++.++ -+++|++-+-|++|||...|+.++....-+.++|+|.-. + .
T Consensus 78 r~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~-------------~--------~ 136 (681)
T KOG3708|consen 78 RGQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEA-------------E--------D 136 (681)
T ss_pred CccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhh-------------h--------C
Confidence 344544 345666664 489999999999999999999999988778899999311 0 0
Q ss_pred CCccccccC-CCeeeeCHHHHHHHHHhCCCcC---CCCcChHHHHHHHh---cCCCeeecC
Q 015683 291 GNKYFRHAT-GQIYAISKDLATYISINQPILH---KFANEDVSLGSWFI---GLEVEHIDD 344 (402)
Q Consensus 291 ~~~Yp~Y~~-G~gYvLS~dla~~I~~~~~~l~---~~~~EDV~vG~~l~---~L~v~~~d~ 344 (402)
++.- |. |.||+||+.++.++-.|-.-.. .-.-.|+.+|.|++ +++.++.|.
T Consensus 137 gs~r---C~l~~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~~At~v~C~~~hQ 194 (681)
T KOG3708|consen 137 GSGR---CRLDTGMLLSQSLLHALRNNLEGCRNDILSADPDEWLGRCIQDATGVGCKPLHQ 194 (681)
T ss_pred ccCc---cccccceeecHHHHHHHHhhHHHhhcccccCCcHHHHHHHHHHhhcCCccchhh
Confidence 1111 55 8999999999999988743322 33567899999994 666655543
No 12
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=95.38 E-value=0.43 Score=43.89 Aligned_cols=114 Identities=13% Similarity=0.042 Sum_probs=58.0
Q ss_pred HHHHHHhcCCceEEEEecCceEecHHHHHHHHhhc-CCCCCeEEEEeec--CcccccCCC-----ccccCCccccCCCCC
Q 015683 221 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRH-RSKPRVYIGCMKS--GPVLSQKNV-----KYHEPEYWKFGEEGN 292 (402)
Q Consensus 221 ~~~wa~~~~~a~fvlKvDDDvfVnl~~L~~~L~~~-~~~~~lY~G~~~~--~pv~rd~~~-----Kwyvp~~w~f~y~~~ 292 (402)
.+.++.+..+.+|++..|||+.+..+.|..++... .+.-.+..|.+.. +...-.... .|+... ........
T Consensus 77 a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 155 (228)
T PF13641_consen 77 ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRF-RSGRRALG 155 (228)
T ss_dssp HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTTS--TT-B---
T ss_pred HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhh-hhhhcccc
Confidence 44666666679999999999999998888888776 3333444444321 110000000 111110 01111111
Q ss_pred ccccccCCCeeeeCHHHHHHHHHhCCCcCCCCcChHHHHHHHhcCCCe
Q 015683 293 KYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLEVE 340 (402)
Q Consensus 293 ~Yp~Y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~ 340 (402)
. .++.|++.++.+++++.+-.-.. ....||..++..+...|.+
T Consensus 156 ~--~~~~G~~~~~rr~~~~~~g~fd~---~~~~eD~~l~~r~~~~G~~ 198 (228)
T PF13641_consen 156 V--AFLSGSGMLFRRSALEEVGGFDP---FILGEDFDLCLRLRAAGWR 198 (228)
T ss_dssp ---S-B--TEEEEEHHHHHHH-S--S---SSSSHHHHHHHHHHHTT--
T ss_pred e--eeccCcEEEEEHHHHHHhCCCCC---CCcccHHHHHHHHHHCCCc
Confidence 1 34679999999999998853222 4446999999888665543
No 13
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=94.26 E-value=0.96 Score=41.44 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=49.8
Q ss_pred EEEECCCCCHHHHHHHHHhhccCchhhhhhhccCceEEEEEeecCCCCchhhHHhhHHHHhhCCCEEEec-----ccccC
Q 015683 137 IGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLE-----HIEGY 211 (402)
Q Consensus 137 I~V~S~p~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~~~FvlG~s~~~~~~~~~~I~~E~~~~~DIL~ld-----f~Dsy 211 (402)
|.|.|-+.+.+||+.+.+..... ++.+-|+-|..... ++. ......+..-.... ..-+-
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~-----------~~~~e~~~Avdg~~---l~~--~~~~~~~~~~~~~~~~~~~lt~gE 67 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL-----------GINFEFFDAVDGRD---LSE--DELFRRYDPELFKKRYGRPLTPGE 67 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc-----------CCceEEEEeecccc---cch--HHHHHHhhhhhhhccccccCCcce
Confidence 34567788899999997766543 33466776665421 111 11111121111100 00111
Q ss_pred CCchhHHHHHHHHHHhcCCceEEEEecCceEecHH
Q 015683 212 HELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLG 246 (402)
Q Consensus 212 ~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVnl~ 246 (402)
-.=.+-.+..++-+++ -+.++.+-..||+.++.+
T Consensus 68 iGC~lSH~~~w~~~v~-~~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 68 IGCALSHIKAWQRIVD-SGLEYALILEDDVIFDPD 101 (200)
T ss_pred EeehhhHHHHHHHHHH-cCCCeEEEEecccccccc
Confidence 1113445556666654 367899999999999865
No 14
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=93.55 E-value=1.4 Score=44.89 Aligned_cols=161 Identities=17% Similarity=0.192 Sum_probs=83.3
Q ss_pred ceEEEEEeecCCCCchhhHHhhHHHHhhCCC--EEEecccccCCCchhHHHHHHHHHHhcCCceEEEEecCceEecHHHH
Q 015683 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKD--FLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGML 248 (402)
Q Consensus 171 ~i~~~FvlG~s~~~~~~~~~~I~~E~~~~~D--IL~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVnl~~L 248 (402)
.+.++|+...+++ .+ .+.+++=.+.|.+ +..+.- ..-.....|.-...+ +.+..+.++++..|+|+.+..+-|
T Consensus 70 ~~EIivvdd~s~D--~t-~~iv~~~~~~~p~~~i~~v~~-~~~~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L 144 (373)
T TIGR03472 70 GFQMLFGVQDPDD--PA-LAVVRRLRADFPDADIDLVID-ARRHGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYL 144 (373)
T ss_pred CeEEEEEeCCCCC--cH-HHHHHHHHHhCCCCceEEEEC-CCCCCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHH
Confidence 3677777665542 22 2233332345655 322211 111222346655444 445568999999999999999998
Q ss_pred HHHHhhcCCCCCe-EEEEe-ecCcc--cccC-----CCccccCCccccCCCCCccccccCCCeeeeCHHHHHHHHHhCCC
Q 015683 249 ATTLSRHRSKPRV-YIGCM-KSGPV--LSQK-----NVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISINQPI 319 (402)
Q Consensus 249 ~~~L~~~~~~~~l-Y~G~~-~~~pv--~rd~-----~~Kwyvp~~w~f~y~~~~Yp~Y~~G~gYvLS~dla~~I~~~~~~ 319 (402)
...+.... .+++ .+++. ...+. .... ..-++.|.. ...+.. .-+.+|.|+.+++.+++.+.+---..
T Consensus 145 ~~lv~~~~-~~~v~~V~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~-~~~~~~~G~~~a~RR~~l~~iGGf~~- 220 (373)
T TIGR03472 145 RQVVAPLA-DPDVGLVTCLYRGRPVPGFWSRLGAMGINHNFLPSV-MVARAL-GRARFCFGATMALRRATLEAIGGLAA- 220 (373)
T ss_pred HHHHHHhc-CCCcceEeccccCCCCCCHHHHHHHHHhhhhhhHHH-HHHHhc-cCCccccChhhheeHHHHHHcCChHH-
Confidence 88877763 2222 22221 11110 0000 001111110 000000 11345889999999999988743211
Q ss_pred cCCCCcChHHHHHHHhcCCCe
Q 015683 320 LHKFANEDVSLGSWFIGLEVE 340 (402)
Q Consensus 320 l~~~~~EDV~vG~~l~~L~v~ 340 (402)
+.....||+.+|.-+...|.+
T Consensus 221 ~~~~~~ED~~l~~~i~~~G~~ 241 (373)
T TIGR03472 221 LAHHLADDYWLGELVRALGLR 241 (373)
T ss_pred hcccchHHHHHHHHHHHcCCe
Confidence 222336999999988655533
No 15
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=93.38 E-value=3.6 Score=42.01 Aligned_cols=160 Identities=14% Similarity=0.042 Sum_probs=80.6
Q ss_pred ceEEEEEeecCCCCchhhHHhhHHHHhhCC---CEEEecccccCCCchhHHHH---HHHHHHh-cCCceEEEEecCceEe
Q 015683 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHK---DFLRLEHIEGYHELSAKTKI---FFSTAVA-KWDADFYVKVDDDVHV 243 (402)
Q Consensus 171 ~i~~~FvlG~s~~~~~~~~~~I~~E~~~~~---DIL~ldf~Dsy~nLt~Kt~~---~~~wa~~-~~~a~fvlKvDDDvfV 243 (402)
.+.+++|-..|.+ ++ .+.+++-.+++. .+..+...+.-.+-.-|... +++.+.+ ..+.+|++..|+|+.+
T Consensus 70 ~~eIIVVDd~StD--~T-~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~ 146 (384)
T TIGR03469 70 KLHVILVDDHSTD--GT-ADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAH 146 (384)
T ss_pred ceEEEEEeCCCCC--cH-HHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCC
Confidence 3567777766652 22 122222222333 34444322222222345322 4444433 2348999999999999
Q ss_pred cHHHHHHHHhhcCCCC-CeEEEEeecCcccccCCCcccc-----------CCccccCCCCCccccccCCCeeeeCHHHHH
Q 015683 244 NLGMLATTLSRHRSKP-RVYIGCMKSGPVLSQKNVKYHE-----------PEYWKFGEEGNKYFRHATGQIYAISKDLAT 311 (402)
Q Consensus 244 nl~~L~~~L~~~~~~~-~lY~G~~~~~pv~rd~~~Kwyv-----------p~~w~f~y~~~~Yp~Y~~G~gYvLS~dla~ 311 (402)
..+.|.+.+......+ .+..|....... ....+... |..|. .. .......+.|++.++++++.+
T Consensus 147 ~p~~l~~lv~~~~~~~~~~vs~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~G~~~lirr~~~~ 222 (384)
T TIGR03469 147 GPDNLARLVARARAEGLDLVSLMVRLRCE--SFWEKLLIPAFVFFFQKLYPFRWV-ND-PRRRTAAAAGGCILIRREALE 222 (384)
T ss_pred ChhHHHHHHHHHHhCCCCEEEecccccCC--CHHHHHHHHHHHHHHHHhcchhhh-cC-CCccceeecceEEEEEHHHHH
Confidence 9888888876654322 333232211000 00000000 11110 01 112234577999999999998
Q ss_pred HHHHhCCCcCCCCcChHHHHHHHhcCC
Q 015683 312 YISINQPILHKFANEDVSLGSWFIGLE 338 (402)
Q Consensus 312 ~I~~~~~~l~~~~~EDV~vG~~l~~L~ 338 (402)
.+---.. ......||+.++.-+...|
T Consensus 223 ~vGGf~~-~~~~~~ED~~L~~r~~~~G 248 (384)
T TIGR03469 223 RIGGIAA-IRGALIDDCTLAAAVKRSG 248 (384)
T ss_pred HcCCHHH-HhhCcccHHHHHHHHHHcC
Confidence 8732111 1122479999998886554
No 16
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=92.36 E-value=7.5 Score=35.67 Aligned_cols=160 Identities=11% Similarity=0.009 Sum_probs=80.2
Q ss_pred CceEEEEEeecCCCCchhhHHhhHHHHhhCCCEEEecccccCCCchhHHHHHHHHHHhcCCceEEEEecCceEecHHHHH
Q 015683 170 KGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLA 249 (402)
Q Consensus 170 ~~i~~~FvlG~s~~~~~~~~~~I~~E~~~~~DIL~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVnl~~L~ 249 (402)
..+.++.+-+.+.+ .....++...+++..+....-. +.. +. ..+..+.+..+.+|++..|+|..+..+-|.
T Consensus 30 ~~~evivvd~~s~d---~~~~~~~~~~~~~~~v~~i~~~----~~~-~~-~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~ 100 (249)
T cd02525 30 DLIEIIVVDGGSTD---GTREIVQEYAAKDPRIRLIDNP----KRI-QS-AGLNIGIRNSRGDIIIRVDAHAVYPKDYIL 100 (249)
T ss_pred CccEEEEEeCCCCc---cHHHHHHHHHhcCCeEEEEeCC----CCC-ch-HHHHHHHHHhCCCEEEEECCCccCCHHHHH
Confidence 34566666655542 2333444444443334333211 111 11 345666665689999999999999988787
Q ss_pred HHHhhcCCC-CCeEEEEeec--CcccccCCCccccCCcccc-----CCCCCccccccCCCeeeeCHHHHHHHHHhCCCcC
Q 015683 250 TTLSRHRSK-PRVYIGCMKS--GPVLSQKNVKYHEPEYWKF-----GEEGNKYFRHATGQIYAISKDLATYISINQPILH 321 (402)
Q Consensus 250 ~~L~~~~~~-~~lY~G~~~~--~pv~rd~~~Kwyvp~~w~f-----~y~~~~Yp~Y~~G~gYvLS~dla~~I~~~~~~l~ 321 (402)
..+...... ..+..|.... ....... ..+.....+.. ......+-.++.|++.++++++.+.+-.-...
T Consensus 101 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-- 177 (249)
T cd02525 101 ELVEALKRTGADNVGGPMETIGESKFQKA-IAVAQSSPLGSGGSAYRGGAVKIGYVDTVHHGAYRREVFEKVGGFDES-- 177 (249)
T ss_pred HHHHHHhcCCCCEEecceecCCCChHHHH-HHHHhhchhccCCccccccccccccccccccceEEHHHHHHhCCCCcc--
Confidence 777654332 2344444321 1110000 00000000000 00000101145688889999998876432222
Q ss_pred CCCcChHHHHHHHhcCCCee
Q 015683 322 KFANEDVSLGSWFIGLEVEH 341 (402)
Q Consensus 322 ~~~~EDV~vG~~l~~L~v~~ 341 (402)
....||..++.-+...|.+-
T Consensus 178 ~~~~eD~~l~~r~~~~G~~~ 197 (249)
T cd02525 178 LVRNEDAELNYRLRKAGYKI 197 (249)
T ss_pred cCccchhHHHHHHHHcCcEE
Confidence 23479999987776555443
No 17
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.29 E-value=4.3 Score=36.81 Aligned_cols=156 Identities=15% Similarity=0.028 Sum_probs=79.8
Q ss_pred eEEEEEeecCCCCchhhHHhhH-HHHhhCCCEEEecccccCCCchhHHHHHHHHHHhcCCceEEEEecCceEecHHHHHH
Q 015683 172 IIIRFMIGHSATSNSILDKAID-SEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLAT 250 (402)
Q Consensus 172 i~~~FvlG~s~~~~~~~~~~I~-~E~~~~~DIL~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVnl~~L~~ 250 (402)
+.++.|-+.+. +. ..+.+. .....+..+..++... -.|. -|. ..+.++.+..+.+|++.+|+|..+..+-|..
T Consensus 29 ~eiivvdd~s~--d~-t~~~~~~~~~~~~~~v~~~~~~~-~~~~-g~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~ 102 (229)
T cd04192 29 FEVILVDDHST--DG-TVQILEFAAAKPNFQLKILNNSR-VSIS-GKK-NALTTAIKAAKGDWIVTTDADCVVPSNWLLT 102 (229)
T ss_pred eEEEEEcCCCC--cC-hHHHHHHHHhCCCcceEEeeccC-cccc-hhH-HHHHHHHHHhcCCEEEEECCCcccCHHHHHH
Confidence 56666665553 22 223343 2222233455554433 2232 233 3356666667899999999999999888888
Q ss_pred HHhhcCC-CCCeEEEEeecCcc---ccc-CCCccccCCccccCCCCCccccccCCCeeeeCHHHHHHHHHhCCCcCCCCc
Q 015683 251 TLSRHRS-KPRVYIGCMKSGPV---LSQ-KNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISINQPILHKFAN 325 (402)
Q Consensus 251 ~L~~~~~-~~~lY~G~~~~~pv---~rd-~~~Kwyvp~~w~f~y~~~~Yp~Y~~G~gYvLS~dla~~I~~~~~~l~~~~~ 325 (402)
++..... ....+.|.....+. ... ..-.+.....-........++..+.|+++++++++.+.+---... .....
T Consensus 103 l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf~~~-~~~~~ 181 (229)
T cd04192 103 FVAFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGGFEGN-DHIAS 181 (229)
T ss_pred HHHHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhcCCccc-ccccc
Confidence 7775433 33445554321110 000 000000000000001122455567899999999999887543222 23446
Q ss_pred ChHHHHHHH
Q 015683 326 EDVSLGSWF 334 (402)
Q Consensus 326 EDV~vG~~l 334 (402)
||..++.-+
T Consensus 182 eD~~~~~~~ 190 (229)
T cd04192 182 GDDELLLAK 190 (229)
T ss_pred CCHHHHHHH
Confidence 777776544
No 18
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=92.09 E-value=8.5 Score=37.44 Aligned_cols=128 Identities=14% Similarity=0.144 Sum_probs=69.2
Q ss_pred HHHHHHhcCCceEEEEecCceEecHHHHHHHHhhcCCCCCeEEE-Eee--cCcccccC--------------CCccccC-
Q 015683 221 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIG-CMK--SGPVLSQK--------------NVKYHEP- 282 (402)
Q Consensus 221 ~~~wa~~~~~a~fvlKvDDDvfVnl~~L~~~L~~~~~~~~lY~G-~~~--~~pv~rd~--------------~~Kwyvp- 282 (402)
+...+.+....+|++..|+|+.+..+-|..++......+...+| .+. .+.-.... ...|...
T Consensus 74 a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (299)
T cd02510 74 ARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLP 153 (299)
T ss_pred HHHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCC
Confidence 34445445578999999999999977777777655433333222 221 01000000 0011110
Q ss_pred Cccc-cCC-CCCccccccCCCeeeeCHHHHHHHHHhCCCcCCCCcChHHHHHHH--hcCCCeeecCCCce
Q 015683 283 EYWK-FGE-EGNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWF--IGLEVEHIDDRNMC 348 (402)
Q Consensus 283 ~~w~-f~y-~~~~Yp~Y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l--~~L~v~~~d~~~F~ 348 (402)
..+. ... +.....++++|+++++++++...+---...+..+..||+-+..=+ .|..+..+.+....
T Consensus 154 ~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~ 223 (299)
T cd02510 154 EEERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRVG 223 (299)
T ss_pred HHHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeeccEEE
Confidence 0000 000 012334567899999999999988554444555557999876444 55555555444333
No 19
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=89.96 E-value=4.9 Score=33.81 Aligned_cols=135 Identities=11% Similarity=0.077 Sum_probs=64.3
Q ss_pred ceEEEEEeecCCCCchhhHHhhHHHHhhCCCEEEecccccCCCchhHHHHHHHHHHhcCCceEEEEecCceEecHHHHHH
Q 015683 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLAT 250 (402)
Q Consensus 171 ~i~~~FvlG~s~~~~~~~~~~I~~E~~~~~DIL~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVnl~~L~~ 250 (402)
.+.++++-..+. +...+.+++-.+....+..+...+.. . .-..+..+.+....+|++.+|||.++..+.|..
T Consensus 27 ~~eiivvdd~s~---d~~~~~~~~~~~~~~~i~~i~~~~n~-g----~~~~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~ 98 (169)
T PF00535_consen 27 DFEIIVVDDGST---DETEEILEEYAESDPNIRYIRNPENL-G----FSAARNRGIKHAKGEYILFLDDDDIISPDWLEE 98 (169)
T ss_dssp EEEEEEEECS-S---SSHHHHHHHHHCCSTTEEEEEHCCCS-H----HHHHHHHHHHH--SSEEEEEETTEEE-TTHHHH
T ss_pred CEEEEEeccccc---cccccccccccccccccccccccccc-c----ccccccccccccceeEEEEeCCCceEcHHHHHH
Confidence 345666655542 22333333333324445444443332 2 223334444445667999999999999876666
Q ss_pred HHhhcCC-CCCeEEEEee--cCc--ccccCCC--ccccCCccccCCCCCccccccCCCeeeeCHHHHHHH
Q 015683 251 TLSRHRS-KPRVYIGCMK--SGP--VLSQKNV--KYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYI 313 (402)
Q Consensus 251 ~L~~~~~-~~~lY~G~~~--~~p--v~rd~~~--Kwyvp~~w~f~y~~~~Yp~Y~~G~gYvLS~dla~~I 313 (402)
++..... ...+.+|... ... ....... .+..............-.+++.|++.++++++.+.+
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 99 LVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp HHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHHHC
T ss_pred HHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHHhh
Confidence 6655543 3445666543 111 1000000 111110000011122344567889999999988764
No 20
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=89.86 E-value=0.61 Score=42.64 Aligned_cols=123 Identities=15% Similarity=0.075 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHhcCCceEEEEecCceEecHHHHHHHHhhcCC-CCCeEEEEeecCcccccCCC---c---cccCCcccc
Q 015683 215 SAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRS-KPRVYIGCMKSGPVLSQKNV---K---YHEPEYWKF 287 (402)
Q Consensus 215 t~Kt~~~~~wa~~~~~a~fvlKvDDDvfVnl~~L~~~L~~~~~-~~~lY~G~~~~~pv~rd~~~---K---wyvp~~w~f 287 (402)
..|+-.......+..+.++++-.|+|+.|+.+-|.+.+..+.. +-.+-.|-....+. +.-.+ . ...+.-+.
T Consensus 16 N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~-~~~~~~l~~~~~~~~~~~~~- 93 (175)
T PF13506_consen 16 NPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPA-RGFWSRLEAAFFNFLPGVLQ- 93 (175)
T ss_pred ChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCC-cCHHHHHHHHHHhHHHHHHH-
Confidence 3577666555433368999999999999999999888877643 22222221111111 00000 0 00111000
Q ss_pred CCCCCccccccCCCeeeeCHHHHHHHHHhCCCcCCCCcChHHHHHHHhcCCCeeec
Q 015683 288 GEEGNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLEVEHID 343 (402)
Q Consensus 288 ~y~~~~Yp~Y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~~~d 343 (402)
.-.-.+++.|+.+++.+++++.+-- ...+..+--||..+|..+...|.+..-
T Consensus 94 ---a~~~~~~~~G~~m~~rr~~L~~~GG-~~~l~~~ladD~~l~~~~~~~G~~v~~ 145 (175)
T PF13506_consen 94 ---ALGGAPFAWGGSMAFRREALEEIGG-FEALADYLADDYALGRRLRARGYRVVL 145 (175)
T ss_pred ---HhcCCCceecceeeeEHHHHHHccc-HHHHhhhhhHHHHHHHHHHHCCCeEEE
Confidence 0124677999999999999987631 122344668999999999877766543
No 21
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=89.68 E-value=15 Score=33.10 Aligned_cols=133 Identities=18% Similarity=0.158 Sum_probs=77.2
Q ss_pred eEEEEEeecCCCCchhhHHhhHHHHhhCC--CEEEecccccCCCchhHHHHHHHHHHhcCCceEEEEecCceEecHHHHH
Q 015683 172 IIIRFMIGHSATSNSILDKAIDSEDAQHK--DFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLA 249 (402)
Q Consensus 172 i~~~FvlG~s~~~~~~~~~~I~~E~~~~~--DIL~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVnl~~L~ 249 (402)
+.+++|...+. +.+ .+.+++-...|. ++......... ....|.. .+..+.+....+|++..|+|+.+..+.|.
T Consensus 31 ~eiivVdd~s~--d~t-~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~-~~n~g~~~a~~d~i~~~D~D~~~~~~~l~ 105 (196)
T cd02520 31 YEILFCVQDED--DPA-IPVVRKLIAKYPNVDARLLIGGEKV-GINPKVN-NLIKGYEEARYDILVISDSDISVPPDYLR 105 (196)
T ss_pred eEEEEEeCCCc--chH-HHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHH-HHHHHHHhCCCCEEEEECCCceEChhHHH
Confidence 67777777664 222 233444444454 33222211111 1223433 24455556678999999999999888887
Q ss_pred HHHhhcCCCCCeEEEEeecCcccccCCCccccCCccccCCCCCccccccCCCeeeeCHHHHHHHHHhCCCcCCCCcChHH
Q 015683 250 TTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVS 329 (402)
Q Consensus 250 ~~L~~~~~~~~lY~G~~~~~pv~rd~~~Kwyvp~~w~f~y~~~~Yp~Y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~ 329 (402)
..+.... .+. +|.+.+ .++.|++.++.+++.+.+---. ....+..||..
T Consensus 106 ~l~~~~~-~~~--~~~v~~---------------------------~~~~g~~~~~r~~~~~~~ggf~-~~~~~~~eD~~ 154 (196)
T cd02520 106 RMVAPLM-DPG--VGLVTC---------------------------LCAFGKSMALRREVLDAIGGFE-AFADYLAEDYF 154 (196)
T ss_pred HHHHHhh-CCC--CCeEEe---------------------------ecccCceeeeEHHHHHhccChH-HHhHHHHHHHH
Confidence 7776542 121 122110 0467999999999998874321 12223479999
Q ss_pred HHHHHhcCCCe
Q 015683 330 LGSWFIGLEVE 340 (402)
Q Consensus 330 vG~~l~~L~v~ 340 (402)
++.-+...|.+
T Consensus 155 l~~rl~~~G~~ 165 (196)
T cd02520 155 LGKLIWRLGYR 165 (196)
T ss_pred HHHHHHHcCCe
Confidence 99888655533
No 22
>PRK11204 N-glycosyltransferase; Provisional
Probab=88.77 E-value=30 Score=35.33 Aligned_cols=146 Identities=16% Similarity=0.175 Sum_probs=79.0
Q ss_pred HHhhHHHHhhCCCEEEecccccCCCchhHHHHHHHHHHhcCCceEEEEecCceEecHHHHHHHHhhcCCCCCeEEEEeec
Q 015683 189 DKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKS 268 (402)
Q Consensus 189 ~~~I~~E~~~~~DIL~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~~ 268 (402)
.+.+++..+++..+...+.. .|.. |. ..++.+.+..+.+|++..|+|..+..+.|.+.++.....+++ |.+.+
T Consensus 98 ~~~l~~~~~~~~~v~~i~~~---~n~G-ka-~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v--~~v~g 170 (420)
T PRK11204 98 GEILDRLAAQIPRLRVIHLA---ENQG-KA-NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRV--GAVTG 170 (420)
T ss_pred HHHHHHHHHhCCcEEEEEcC---CCCC-HH-HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCe--EEEEC
Confidence 34455555566656555432 3332 43 345666666789999999999999999888888766433332 33322
Q ss_pred CcccccCCCccccC----Cccc-cCC-----CCCccccccCCCeeeeCHHHHHHHHHhCCCcCCCCcChHHHHHHHhcC-
Q 015683 269 GPVLSQKNVKYHEP----EYWK-FGE-----EGNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGL- 337 (402)
Q Consensus 269 ~pv~rd~~~Kwyvp----~~w~-f~y-----~~~~Yp~Y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L- 337 (402)
.+..++.. .+... ++.. ++. .....+...+|.+.++.+++...+---. +....||+.++.-+...
T Consensus 171 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~~---~~~~~ED~~l~~rl~~~G 246 (420)
T PRK11204 171 NPRIRNRS-TLLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGVITAFRKSALHEVGYWS---TDMITEDIDISWKLQLRG 246 (420)
T ss_pred Cceeccch-hHHHHHHHHHHHHhhhHHHHHHHHhCCceEecceeeeeeHHHHHHhCCCC---CCcccchHHHHHHHHHcC
Confidence 22111111 11000 0000 000 0001122357888999999988763211 22347999999877544
Q ss_pred -CCeeecCC
Q 015683 338 -EVEHIDDR 345 (402)
Q Consensus 338 -~v~~~d~~ 345 (402)
.+...++.
T Consensus 247 ~~i~~~p~~ 255 (420)
T PRK11204 247 WDIRYEPRA 255 (420)
T ss_pred CeEEecccc
Confidence 45454443
No 23
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.48 E-value=8.4 Score=34.43 Aligned_cols=116 Identities=16% Similarity=0.106 Sum_probs=63.9
Q ss_pred HHHhcCCceEEEEecCceEecHHHHHHHHhh-cC-CCCCeEEEEee----cCcccccCCCccccCCcc--ccCCCCCccc
Q 015683 224 TAVAKWDADFYVKVDDDVHVNLGMLATTLSR-HR-SKPRVYIGCMK----SGPVLSQKNVKYHEPEYW--KFGEEGNKYF 295 (402)
Q Consensus 224 wa~~~~~a~fvlKvDDDvfVnl~~L~~~L~~-~~-~~~~lY~G~~~----~~pv~rd~~~Kwyvp~~w--~f~y~~~~Yp 295 (402)
.+....+.+|++..|+|..+..+.|...+.. .. +...++.|.+. .+.+... .++..... ...+......
T Consensus 73 ~g~~~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 149 (214)
T cd04196 73 SLLQAADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGE---SFFEYQKIKPGTSFNNLLFQ 149 (214)
T ss_pred HHHHhCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCccc---ccccccccCCccCHHHHHHh
Confidence 3345568999999999999988888888876 22 33334444332 1111110 00000000 0000011223
Q ss_pred cccCCCeeeeCHHHHHHHHHhCCCcCCCCcChHHHHHHHhcCC-CeeecC
Q 015683 296 RHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLE-VEHIDD 344 (402)
Q Consensus 296 ~Y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~-v~~~d~ 344 (402)
.++.|++.++.+++++.+....... ...||.++...+...+ +..++.
T Consensus 150 ~~~~~~~~~~r~~~~~~~~~~~~~~--~~~~D~~~~~~~~~~~~~~~~~~ 197 (214)
T cd04196 150 NVVTGCTMAFNRELLELALPFPDAD--VIMHDWWLALLASAFGKVVFLDE 197 (214)
T ss_pred CccCCceeeEEHHHHHhhccccccc--cccchHHHHHHHHHcCceEEcch
Confidence 4567999999999999876543332 4578888876665433 444433
No 24
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=87.13 E-value=20 Score=33.28 Aligned_cols=119 Identities=18% Similarity=0.121 Sum_probs=60.9
Q ss_pred HHHHHHhcCCceEEEEecCceEecHHHHHHHHhhcC-CCCCeEEEEeec-CcccccCCCc--cccCCccccCCCCCcccc
Q 015683 221 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR-SKPRVYIGCMKS-GPVLSQKNVK--YHEPEYWKFGEEGNKYFR 296 (402)
Q Consensus 221 ~~~wa~~~~~a~fvlKvDDDvfVnl~~L~~~L~~~~-~~~~lY~G~~~~-~pv~rd~~~K--wyvp~~w~f~y~~~~Yp~ 296 (402)
.+..+.+....+|++.+|+|+.+..+-|.+.+.... +...+..|.... .+........ |.....+.........+.
T Consensus 100 a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (251)
T cd06439 100 ALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKRAESRLGSTV 179 (251)
T ss_pred HHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHHHHHHhcCCee
Confidence 345555555679999999999999777777777664 223344444321 1100000000 000000000000011233
Q ss_pred ccCCCeeeeCHHHHHHHHHhCCCcCCCCcChHHHHHHHhcCC--CeeecCC
Q 015683 297 HATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLE--VEHIDDR 345 (402)
Q Consensus 297 Y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~~d~~ 345 (402)
.+.|+++++.+++.. ..-.....||..++.-+...| +...+..
T Consensus 180 ~~~g~~~~~rr~~~~------~~~~~~~~eD~~l~~~~~~~G~~~~~~~~~ 224 (251)
T cd06439 180 GANGAIYAIRRELFR------PLPADTINDDFVLPLRIARQGYRVVYEPDA 224 (251)
T ss_pred eecchHHHhHHHHhc------CCCcccchhHHHHHHHHHHcCCeEEecccc
Confidence 466777777777665 112223479999988776555 4444433
No 25
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=86.74 E-value=10 Score=34.54 Aligned_cols=120 Identities=13% Similarity=0.017 Sum_probs=67.5
Q ss_pred HHHHHhcCCceEEEEecCceEecHHHHHHHHhhcCCCCCe--EEEEee--cC-cc---cccC--CCccccC-CccccCCC
Q 015683 222 FSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRV--YIGCMK--SG-PV---LSQK--NVKYHEP-EYWKFGEE 290 (402)
Q Consensus 222 ~~wa~~~~~a~fvlKvDDDvfVnl~~L~~~L~~~~~~~~l--Y~G~~~--~~-pv---~rd~--~~Kwyvp-~~w~f~y~ 290 (402)
+..+.+..+.+|++..|+|.++..+.|..++......+++ ..|... .. .. .+.. ....+.. ..+..
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 152 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGR--- 152 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHH---
Confidence 4455555589999999999999998888888766443332 222211 11 10 0000 0000000 00000
Q ss_pred CCccccccCCCeeeeCHHHHHHHHHhCCCcCCCCcChHHHHHHHhcCC--CeeecCCCc
Q 015683 291 GNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLE--VEHIDDRNM 347 (402)
Q Consensus 291 ~~~Yp~Y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~~d~~~F 347 (402)
......++.|++.++++++.+.+---. ..+..||..++.-+...| +..+++...
T Consensus 153 ~~~~~~~~~g~~~~~r~~~~~~ig~~~---~~~~~eD~~l~~r~~~~g~~i~~~~~~~~ 208 (234)
T cd06421 153 DRWGAAFCCGSGAVVRREALDEIGGFP---TDSVTEDLATSLRLHAKGWRSVYVPEPLA 208 (234)
T ss_pred hhcCCceecCceeeEeHHHHHHhCCCC---ccceeccHHHHHHHHHcCceEEEecCccc
Confidence 001245678999999999998874321 234579999998886554 555555433
No 26
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=84.31 E-value=8.8 Score=33.83 Aligned_cols=134 Identities=10% Similarity=0.098 Sum_probs=72.6
Q ss_pred ceEEEEEeecCCCCchhhHHhhHHHHhhCCCEEEecccccCCCchhHHHHHHHHHHhcCCceEEEEecCceEecHHHHHH
Q 015683 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLAT 250 (402)
Q Consensus 171 ~i~~~FvlG~s~~~~~~~~~~I~~E~~~~~DIL~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVnl~~L~~ 250 (402)
.+.++.+-+.+.. .+ ...+.....++..+..+....++ - |. .+++.+......+|++.+|+|.....+.|..
T Consensus 29 ~~eiivvdd~s~d--~t-~~~~~~~~~~~~~i~~i~~~~n~---G-~~-~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~ 100 (181)
T cd04187 29 DYEIIFVDDGSTD--RT-LEILRELAARDPRVKVIRLSRNF---G-QQ-AALLAGLDHARGDAVITMDADLQDPPELIPE 100 (181)
T ss_pred CeEEEEEeCCCCc--cH-HHHHHHHHhhCCCEEEEEecCCC---C-cH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHHH
Confidence 4566666655542 22 22344444455556555543322 1 22 3344455555679999999999998877777
Q ss_pred HHhhcCCCCCeEEEEeec--CcccccCCCccccCCccccCCCCCccccccCCCeeeeCHHHHHHHHH
Q 015683 251 TLSRHRSKPRVYIGCMKS--GPVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISI 315 (402)
Q Consensus 251 ~L~~~~~~~~lY~G~~~~--~pv~rd~~~Kwyvp~~w~f~y~~~~Yp~Y~~G~gYvLS~dla~~I~~ 315 (402)
.+....+...+.+|.... .+..+.-..+.+.... ........+...|+.+++++++++.+..
T Consensus 101 l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 164 (181)
T cd04187 101 MLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLI---NKLSGVDIPDNGGDFRLMDRKVVDALLL 164 (181)
T ss_pred HHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHH---HHHcCCCCCCCCCCEEEEcHHHHHHHHh
Confidence 777655555676676431 1111000011111000 0001133445678899999999998764
No 27
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=83.93 E-value=19 Score=32.16 Aligned_cols=103 Identities=15% Similarity=0.080 Sum_probs=60.4
Q ss_pred HHHHHHHHHhcCCceEEEEecCceEecHHHHHHHHhhcC-CCCCeEEEEeecCcccccCCCccccCCccccCCCCCcccc
Q 015683 218 TKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR-SKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFGEEGNKYFR 296 (402)
Q Consensus 218 t~~~~~wa~~~~~a~fvlKvDDDvfVnl~~L~~~L~~~~-~~~~lY~G~~~~~pv~rd~~~Kwyvp~~w~f~y~~~~Yp~ 296 (402)
.-.+++++. ..+.+|++..|+|..+..+.|...+.... +.-.++.|... .. .+
T Consensus 68 ~n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------------~~-------~~----- 121 (202)
T cd04185 68 FYEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVL-------------DP-------DG----- 121 (202)
T ss_pred HHHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeE-------------cC-------CC-----
Confidence 344566665 56889999999999999877776666553 22222222211 00 01
Q ss_pred ccCCCeeeeCHHHHHHHHHhCCCcCCCCcChHHHHHHHhcCCCe-eecCCCcee
Q 015683 297 HATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLEVE-HIDDRNMCC 349 (402)
Q Consensus 297 Y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~-~~d~~~F~~ 349 (402)
.+++.++.+++.+.+--..... ....||+.++.-+...|.. ......+.+
T Consensus 122 --~~~~~~~~~~~~~~~g~~~~~~-~~~~eD~~~~~r~~~~G~~i~~~~~~~~h 172 (202)
T cd04185 122 --SFVGVLISRRVVEKIGLPDKEF-FIWGDDTEYTLRASKAGPGIYVPDAVVVH 172 (202)
T ss_pred --ceEEEEEeHHHHHHhCCCChhh-hccchHHHHHHHHHHcCCcEEecceEEEE
Confidence 3456789999988774322222 2346999998777544422 444444433
No 28
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=83.28 E-value=4.8 Score=36.12 Aligned_cols=116 Identities=14% Similarity=0.139 Sum_probs=66.0
Q ss_pred EEEEecCceEecHHHHHHHHhhcCCCCCeEE--EEeecCcccccCCCccccCCc-ccc-----CCCCCccccccCCCeee
Q 015683 233 FYVKVDDDVHVNLGMLATTLSRHRSKPRVYI--GCMKSGPVLSQKNVKYHEPEY-WKF-----GEEGNKYFRHATGQIYA 304 (402)
Q Consensus 233 fvlKvDDDvfVnl~~L~~~L~~~~~~~~lY~--G~~~~~pv~rd~~~Kwyvp~~-w~f-----~y~~~~Yp~Y~~G~gYv 304 (402)
||+-+|+|+-+..+-|.+.+.... .+++-+ |.....+ ....-.++..-+. +.. .......+.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIFRN-RGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEecC-CCChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 688899999999998888877665 333222 2222100 0000011111110 000 00112456678999999
Q ss_pred eCHHHHHHHHHhCCCcCCCCcChHHHHHHHh--cCCCeeecCCCceecCC
Q 015683 305 ISKDLATYISINQPILHKFANEDVSLGSWFI--GLEVEHIDDRNMCCQTP 352 (402)
Q Consensus 305 LS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~L~v~~~d~~~F~~~~~ 352 (402)
+++++.+.+.--. -..+..||..+|.-+. |..+..+++....+..|
T Consensus 79 ~r~~~l~~vg~~~--~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~p 126 (193)
T PF13632_consen 79 FRREALREVGGFD--DPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEAP 126 (193)
T ss_pred eeHHHHHHhCccc--ccccccchHHHHHHHHHCCCEEEEecccceeeeCC
Confidence 9999999874222 2345579999997764 55566777664544444
No 29
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=83.07 E-value=1.7 Score=42.40 Aligned_cols=52 Identities=19% Similarity=0.135 Sum_probs=40.4
Q ss_pred cCCCeeeeCHHHHHHHHHhCC-C---cCCCCcChHHHHHHHhcCCCeeecCCCcee
Q 015683 298 ATGQIYAISKDLATYISINQP-I---LHKFANEDVSLGSWFIGLEVEHIDDRNMCC 349 (402)
Q Consensus 298 ~~G~gYvLS~dla~~I~~~~~-~---l~~~~~EDV~vG~~l~~L~v~~~d~~~F~~ 349 (402)
.+|+|++||..||+.|..... . .+.+.--|--+..|+..+++....+++|..
T Consensus 11 fGGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ 66 (255)
T PF04646_consen 11 FGGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQ 66 (255)
T ss_pred ccCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCcee
Confidence 379999999999999988532 1 233344788899999889888777788864
No 30
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=82.72 E-value=10 Score=31.74 Aligned_cols=95 Identities=12% Similarity=0.105 Sum_probs=50.5
Q ss_pred HHHHHHHhcCCceEEEEecCceEecHHHHHHHHhhcCCCCC--eEEEEeecC----cccccC-CCccccCCcccc-CCCC
Q 015683 220 IFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPR--VYIGCMKSG----PVLSQK-NVKYHEPEYWKF-GEEG 291 (402)
Q Consensus 220 ~~~~wa~~~~~a~fvlKvDDDvfVnl~~L~~~L~~~~~~~~--lY~G~~~~~----pv~rd~-~~Kwyvp~~w~f-~y~~ 291 (402)
..+.++.+..+.+|++..|+|..+..+.|..++......+. +..|..... ...... ..++........ ....
T Consensus 68 ~~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
T cd06423 68 GALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSA 147 (180)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhhe
Confidence 34455555568999999999999988777777455433332 333333211 111100 001111000000 0001
Q ss_pred CccccccCCCeeeeCHHHHHHHH
Q 015683 292 NKYFRHATGQIYAISKDLATYIS 314 (402)
Q Consensus 292 ~~Yp~Y~~G~gYvLS~dla~~I~ 314 (402)
..++..+.|.++++++++...+-
T Consensus 148 ~~~~~~~~g~~~~~~~~~~~~~g 170 (180)
T cd06423 148 LGGVLVLSGAFGAFRREALREVG 170 (180)
T ss_pred ecceeecCchHHHHHHHHHHHhC
Confidence 23446678999999999888764
No 31
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=81.92 E-value=30 Score=29.16 Aligned_cols=80 Identities=18% Similarity=0.177 Sum_probs=53.0
Q ss_pred hcCCceEEEEecCceEecHHHHHHHHhhcCCCCCe-EEEEeecCcccccCCCccccCCccccCCCCCccccccCCCeeee
Q 015683 227 AKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRV-YIGCMKSGPVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQIYAI 305 (402)
Q Consensus 227 ~~~~a~fvlKvDDDvfVnl~~L~~~L~~~~~~~~l-Y~G~~~~~pv~rd~~~Kwyvp~~w~f~y~~~~Yp~Y~~G~gYvL 305 (402)
+..+.+|++..|||..+..+.+..++......+.+ .++.. +.|++.++
T Consensus 71 ~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~ 119 (166)
T cd04186 71 REAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK-------------------------------VSGAFLLV 119 (166)
T ss_pred hhCCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc-------------------------------CceeeEee
Confidence 33489999999999999988888877654332221 11111 57899999
Q ss_pred CHHHHHHHHHhCCCcCCCCcChHHHHHHHhcCC
Q 015683 306 SKDLATYISINQPILHKFANEDVSLGSWFIGLE 338 (402)
Q Consensus 306 S~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~ 338 (402)
++++++.+-.-...... ..||..+..-+...|
T Consensus 120 ~~~~~~~~~~~~~~~~~-~~eD~~~~~~~~~~g 151 (166)
T cd04186 120 RREVFEEVGGFDEDFFL-YYEDVDLCLRARLAG 151 (166)
T ss_pred eHHHHHHcCCCChhhhc-cccHHHHHHHHHHcC
Confidence 99988876432222212 568998887665444
No 32
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=81.73 E-value=28 Score=30.95 Aligned_cols=117 Identities=10% Similarity=0.019 Sum_probs=61.3
Q ss_pred HHHHHHhcCCceEEEEecCceEecHHHHHHHHhhcCC--CCCeEEEEeec--CcccccCCCccccCCcc--ccCCCCCcc
Q 015683 221 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRS--KPRVYIGCMKS--GPVLSQKNVKYHEPEYW--KFGEEGNKY 294 (402)
Q Consensus 221 ~~~wa~~~~~a~fvlKvDDDvfVnl~~L~~~L~~~~~--~~~lY~G~~~~--~pv~rd~~~Kwyvp~~w--~f~y~~~~Y 294 (402)
.+..+....+.+|++..|+|.++..+.|...+..... .-.++.|.+.. ..... ...+. .|... ...+....-
T Consensus 71 a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~ 148 (201)
T cd04195 71 ALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGND-IGKRR-LPTSHDDILKFARRRS 148 (201)
T ss_pred HHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCe-ecccc-CCCCHHHHHHHhccCC
Confidence 3455555568999999999999998888887776532 23355554321 11100 00010 11100 000000011
Q ss_pred ccccCCCeeeeCHHHHHHHHHhCCCcCCCCcChHHHHHHHh--cCCCeeecC
Q 015683 295 FRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFI--GLEVEHIDD 344 (402)
Q Consensus 295 p~Y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~L~v~~~d~ 344 (402)
+ ..|++.++.+.+...+-.-. +....||..+...+. +..+.++++
T Consensus 149 -~-~~~~~~~~rr~~~~~~g~~~---~~~~~eD~~~~~r~~~~g~~~~~~~~ 195 (201)
T cd04195 149 -P-FNHPTVMFRKSKVLAVGGYQ---DLPLVEDYALWARMLANGARFANLPE 195 (201)
T ss_pred -C-CCChHHhhhHHHHHHcCCcC---CCCCchHHHHHHHHHHcCCceecccH
Confidence 1 24566677777766542211 225699999988875 444555443
No 33
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=81.26 E-value=10 Score=33.09 Aligned_cols=97 Identities=14% Similarity=0.073 Sum_probs=59.0
Q ss_pred HHHHHHhcCCceEEEEecCceEecHHHHHHHHhhcCCCCCeEEEEeecCcccccCCCccccCCccccCCCCCccccccCC
Q 015683 221 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFGEEGNKYFRHATG 300 (402)
Q Consensus 221 ~~~wa~~~~~a~fvlKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~~~pv~rd~~~Kwyvp~~w~f~y~~~~Yp~Y~~G 300 (402)
.+..+.+....+|++..|+|..+..+-|...++...+ .....|... +.... .-.....|
T Consensus 70 ~~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~-~~~v~g~~~------------~~~~~--------~~~~~~~~ 128 (182)
T cd06420 70 IRNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEP-GVFLSGSRV------------LLNEK--------LTERGIRG 128 (182)
T ss_pred HHHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCC-CcEEeccee------------ecccc--------cceeEecc
Confidence 3455555568899999999999998888877776532 222223211 00000 00023467
Q ss_pred CeeeeCHHHHHHHHHhCCCcCCCCcChHHHHHHHhcCC
Q 015683 301 QIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLE 338 (402)
Q Consensus 301 ~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~ 338 (402)
+++++.+.....+-.-......+..||+.++.-+...|
T Consensus 129 ~~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g 166 (182)
T cd06420 129 CNMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSG 166 (182)
T ss_pred ceEEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcC
Confidence 78888888777543333333344589999988776666
No 34
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=80.98 E-value=13 Score=32.49 Aligned_cols=113 Identities=12% Similarity=-0.057 Sum_probs=64.2
Q ss_pred HHHHHHHhcCCceEEEEecCceEecHHHHHHHHhhcC--CCCCeEEEEee--cCcccccCCCccccCCccccCCCCCccc
Q 015683 220 IFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR--SKPRVYIGCMK--SGPVLSQKNVKYHEPEYWKFGEEGNKYF 295 (402)
Q Consensus 220 ~~~~wa~~~~~a~fvlKvDDDvfVnl~~L~~~L~~~~--~~~~lY~G~~~--~~pv~rd~~~Kwyvp~~w~f~y~~~~Yp 295 (402)
..+..+.+..+.+|++..|+|..+..+.+...+.... +...+..|... .+.... ...+...+.. .......
T Consensus 65 ~a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~ 139 (202)
T cd06433 65 DAMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRV-IGRRRPPPFL----DKFLLYG 139 (202)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCc-ccCCCCcchh----hhHHhhc
Confidence 3455566666889999999999999888888874332 34456656542 111100 0011000110 0111234
Q ss_pred cccCCCeeeeCHHHHHHHHHhCCCcCCCCcChHHHHHHHhcCCC
Q 015683 296 RHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLEV 339 (402)
Q Consensus 296 ~Y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v 339 (402)
.+..|++.++++++.+.+-.-...+ ...||..+..-+...|.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~f~~~~--~~~~D~~~~~r~~~~g~ 181 (202)
T cd06433 140 MPICHQATFFRRSLFEKYGGFDESY--RIAADYDLLLRLLLAGK 181 (202)
T ss_pred CcccCcceEEEHHHHHHhCCCchhh--CchhhHHHHHHHHHcCC
Confidence 4567888999999998875322212 23578877766654443
No 35
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=80.52 E-value=43 Score=30.57 Aligned_cols=126 Identities=17% Similarity=0.055 Sum_probs=63.6
Q ss_pred HHHHHHHhcCCceEEEEecCceEecHHHHHHHH---hhcCCCCCe-EEEEeecCcccccCCCccccCCcc----ccCCCC
Q 015683 220 IFFSTAVAKWDADFYVKVDDDVHVNLGMLATTL---SRHRSKPRV-YIGCMKSGPVLSQKNVKYHEPEYW----KFGEEG 291 (402)
Q Consensus 220 ~~~~wa~~~~~a~fvlKvDDDvfVnl~~L~~~L---~~~~~~~~l-Y~G~~~~~pv~rd~~~Kwyvp~~w----~f~y~~ 291 (402)
.+++.+.. .+++|++..|+|+.+..+.|..++ ......+.+ .+|..............+..+..+ ......
T Consensus 66 ~g~~~a~~-~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (237)
T cd02526 66 IGIKAALE-NGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEEG 144 (237)
T ss_pred HHHHHHHh-CCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecccccCC
Confidence 34555443 278999999999999988888875 323223332 223221100000000000000000 000001
Q ss_pred CccccccCCCeeeeCHHHHHHHHHhCCCcCCCCcChHHHHHHHhcCC--CeeecCCCc
Q 015683 292 NKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLE--VEHIDDRNM 347 (402)
Q Consensus 292 ~~Yp~Y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~~d~~~F 347 (402)
..-..++.|++.++++++.+.+---...+ .+..||+.++.-+...| +..++....
T Consensus 145 ~~~~~~~~~~~~~~rr~~~~~~ggfd~~~-~~~~eD~d~~~r~~~~G~~~~~~~~~~v 201 (237)
T cd02526 145 LKEVDFLITSGSLISLEALEKVGGFDEDL-FIDYVDTEWCLRARSKGYKIYVVPDAVL 201 (237)
T ss_pred ceEeeeeeccceEEcHHHHHHhCCCCHHH-cCccchHHHHHHHHHcCCcEEEEcCeEE
Confidence 11223456788899999888874322222 23468999988886554 444444433
No 36
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=79.13 E-value=19 Score=30.90 Aligned_cols=116 Identities=11% Similarity=0.028 Sum_probs=63.6
Q ss_pred EEECCCCCHHHHHHHHHhhccCchhhhhhhccCceEEEEEeecCCCCchhhHHhhHHHHhhCCCEE-EecccccCCCchh
Q 015683 138 GINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFL-RLEHIEGYHELSA 216 (402)
Q Consensus 138 ~V~S~p~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~~~FvlG~s~~~~~~~~~~I~~E~~~~~DIL-~ldf~Dsy~nLt~ 216 (402)
.|.+-+...+||+.+++.-... ++.+-|+-|......+ ...+......+.... ..+..-+--.-.+
T Consensus 3 ~vInL~~~~~Rr~~~~~~~~~~-----------~~~~~~~~Avd~~~~~--~~~~~~~~~~~~~~~~~~~l~~gEiGC~l 69 (128)
T cd06532 3 FVINLDRSTDRRERMEAQLAAL-----------GLDFEFFDAVDGKDLS--EEELAALYDALFLPRYGRPLTPGEIGCFL 69 (128)
T ss_pred EEEECCCCHHHHHHHHHHHHHc-----------CCCeEEEeccccccCC--HHHHHHHhHHHhhhhcCCCCChhhHHHHH
Confidence 4567788889999999854433 3446677666542111 111111111000000 0001111111122
Q ss_pred HHHHHHHHHHhcCCceEEEEecCceEecHHHHHHHHhhcCCCCCeEEEEeecCcccccCCCccccCCccccCCCCCcccc
Q 015683 217 KTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFGEEGNKYFR 296 (402)
Q Consensus 217 Kt~~~~~wa~~~~~a~fvlKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~~~pv~rd~~~Kwyvp~~w~f~y~~~~Yp~ 296 (402)
-.+..++.+++ -+.++.+-..||+.+..+
T Consensus 70 SH~~~w~~~~~-~~~~~alIlEDDv~~~~~-------------------------------------------------- 98 (128)
T cd06532 70 SHYKLWQKIVE-SNLEYALILEDDAILDPD-------------------------------------------------- 98 (128)
T ss_pred HHHHHHHHHHH-cCCCeEEEEccCcEECCC--------------------------------------------------
Confidence 33344444443 366899999999988776
Q ss_pred ccCCCeeeeCHHHHHHHHHhCCC
Q 015683 297 HATGQIYAISKDLATYISINQPI 319 (402)
Q Consensus 297 Y~~G~gYvLS~dla~~I~~~~~~ 319 (402)
+..||++|+..|+++......
T Consensus 99 --~~~~Y~vs~~~A~~ll~~~~~ 119 (128)
T cd06532 99 --GTAGYLVSRKGAKKLLAALEP 119 (128)
T ss_pred --CceEEEeCHHHHHHHHHhCCC
Confidence 457899999999999987554
No 37
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=77.01 E-value=60 Score=29.73 Aligned_cols=114 Identities=17% Similarity=0.158 Sum_probs=62.8
Q ss_pred HHHHHHhc--CCceEEEEecCceEecHHHHHHHHhhcCCCCCeEEEEeecCcccccCCCccccCC-cccc----C--CCC
Q 015683 221 FFSTAVAK--WDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPE-YWKF----G--EEG 291 (402)
Q Consensus 221 ~~~wa~~~--~~a~fvlKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~~~pv~rd~~~Kwyvp~-~w~f----~--y~~ 291 (402)
.+.++.+. .+.+|++..|+|+.+..+.|...+.... .+.+ |.+.+....++....++... .|.+ . .+.
T Consensus 73 a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (236)
T cd06435 73 ALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD-DPRV--GFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVS 149 (236)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCCe--eEEecCccccCCCccHHHHHHhHHHHHHHHHHhcc
Confidence 45666654 2479999999999999999988887664 2322 32211001111111111100 0000 0 000
Q ss_pred -Cc-cccccCCCeeeeCHHHHHHHHHhCCCcCCCCcChHHHHHHHhcCCCe
Q 015683 292 -NK-YFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLEVE 340 (402)
Q Consensus 292 -~~-Yp~Y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~ 340 (402)
.. -..++.|.+.++++++...+---.. .+..||+-++.=+...|.+
T Consensus 150 ~~~~~~~~~~g~~~~~rr~~~~~iGgf~~---~~~~eD~dl~~r~~~~G~~ 197 (236)
T cd06435 150 RNERNAIIQHGTMCLIRRSALDDVGGWDE---WCITEDSELGLRMHEAGYI 197 (236)
T ss_pred ccccCceEEecceEEEEHHHHHHhCCCCC---ccccchHHHHHHHHHCCcE
Confidence 00 0124678889999999998743222 2358999999877655533
No 38
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=75.97 E-value=87 Score=31.71 Aligned_cols=164 Identities=13% Similarity=0.076 Sum_probs=94.4
Q ss_pred eEEEEEeecCCCCchhhHHhhHHHHhhCCCEEEecccccCCCchhHHHHHHHHHHhcCCceEEEEecCceEecHHHHHHH
Q 015683 172 IIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATT 251 (402)
Q Consensus 172 i~~~FvlG~s~~~~~~~~~~I~~E~~~~~DIL~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVnl~~L~~~ 251 (402)
..++.+...+. +..-+.+++-..++++.+..... -.+ ...-...+.++....+.++++..|.|+.+..+.|.+.
T Consensus 85 ~evivv~d~~~---d~~~~~~~~~~~~~~~~~~~~~~--~~~-~~gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~ 158 (439)
T COG1215 85 YEVIVVDDGST---DETYEILEELGAEYGPNFRVIYP--EKK-NGGKAGALNNGLKRAKGDVVVILDADTVPEPDALREL 158 (439)
T ss_pred ceEEEECCCCC---hhHHHHHHHHHhhcCcceEEEec--ccc-CccchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHH
Confidence 56666665443 33444555556666544444422 011 1222446677776667999999999999999999999
Q ss_pred HhhcCCCCCe-EEEEee--cCcccccCCCccccCCc-------cccCCCCCccccccCCCeeeeCHHHHHHHHHhCCCcC
Q 015683 252 LSRHRSKPRV-YIGCMK--SGPVLSQKNVKYHEPEY-------WKFGEEGNKYFRHATGQIYAISKDLATYISINQPILH 321 (402)
Q Consensus 252 L~~~~~~~~l-Y~G~~~--~~pv~rd~~~Kwyvp~~-------w~f~y~~~~Yp~Y~~G~gYvLS~dla~~I~~~~~~l~ 321 (402)
+......+.. +.|... ..+.....-.+-..-++ +.... ....+..+.|++.++.+++++.+- ....
T Consensus 159 ~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~G~~~~~rr~aL~~~g---~~~~ 234 (439)
T COG1215 159 VSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAAS-KGGLISFLSGSSSAFRRSALEEVG---GWLE 234 (439)
T ss_pred HhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhhhh-hcCCeEEEcceeeeEEHHHHHHhC---CCCC
Confidence 9887644433 333321 11000000000000000 00011 123577799999999999998887 2234
Q ss_pred CCCcChHHHHHHHhcC--CCeeecCC
Q 015683 322 KFANEDVSLGSWFIGL--EVEHIDDR 345 (402)
Q Consensus 322 ~~~~EDV~vG~~l~~L--~v~~~d~~ 345 (402)
..--||..++..+... .+..+++.
T Consensus 235 ~~i~ED~~lt~~l~~~G~~~~~~~~~ 260 (439)
T COG1215 235 DTITEDADLTLRLHLRGYRVVYVPEA 260 (439)
T ss_pred CceeccHHHHHHHHHCCCeEEEeecc
Confidence 4457999999988644 45555544
No 39
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=75.47 E-value=1.1e+02 Score=31.91 Aligned_cols=158 Identities=14% Similarity=0.174 Sum_probs=84.7
Q ss_pred ceEEEEEeecCCCCchhhHHhhHHHHhhCCCEEEecccccCCCchhHHHHHHHHHHhcCCceEEEEecCceEecHHHHHH
Q 015683 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLAT 250 (402)
Q Consensus 171 ~i~~~FvlG~s~~~~~~~~~~I~~E~~~~~DIL~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVnl~~L~~ 250 (402)
.+.++++...+. ++ ..+.+++..+++..+...... .|.. |. ..++.+....+.+|++..|.|..+..+.|..
T Consensus 104 ~~eIivVdDgs~--D~-t~~~~~~~~~~~~~v~vv~~~---~n~G-ka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~ 175 (444)
T PRK14583 104 NIEVIAINDGSS--DD-TAQVLDALLAEDPRLRVIHLA---HNQG-KA-IALRMGAAAARSEYLVCIDGDALLDKNAVPY 175 (444)
T ss_pred CeEEEEEECCCC--cc-HHHHHHHHHHhCCCEEEEEeC---CCCC-HH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHH
Confidence 456655555443 22 333444445556555433322 2322 43 3556666667899999999999999998888
Q ss_pred HHhhcCCCCCeEEEEeecCcccccCCC---ccccCCccc-c--------CCCCCccccccCCCeeeeCHHHHHHHHHhCC
Q 015683 251 TLSRHRSKPRVYIGCMKSGPVLSQKNV---KYHEPEYWK-F--------GEEGNKYFRHATGQIYAISKDLATYISINQP 318 (402)
Q Consensus 251 ~L~~~~~~~~lY~G~~~~~pv~rd~~~---Kwyvp~~w~-f--------~y~~~~Yp~Y~~G~gYvLS~dla~~I~~~~~ 318 (402)
.+......+++ |.+.+.+..++... +....++.. + .+ + -+..++|.+.++.+++.+.+---.
T Consensus 176 lv~~~~~~~~~--g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-g--~~~~~sG~~~~~rr~al~~vGg~~- 249 (444)
T PRK14583 176 LVAPLIANPRT--GAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVY-G--QVFTVSGVVAAFRRRALADVGYWS- 249 (444)
T ss_pred HHHHHHhCCCe--EEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHh-C--CceEecCceeEEEHHHHHHcCCCC-
Confidence 87765333332 33332222221111 111001000 0 00 1 122357888999999887763222
Q ss_pred CcCCCCcChHHHHHHHhcCC--CeeecC
Q 015683 319 ILHKFANEDVSLGSWFIGLE--VEHIDD 344 (402)
Q Consensus 319 ~l~~~~~EDV~vG~~l~~L~--v~~~d~ 344 (402)
+..-.||..+|.-+...| +...++
T Consensus 250 --~~~i~ED~dl~~rl~~~G~~i~~~p~ 275 (444)
T PRK14583 250 --PDMITEDIDISWKLQLKHWSVFFEPR 275 (444)
T ss_pred --CCcccccHHHHHHHHHcCCeEEEeec
Confidence 223479999998886554 444443
No 40
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=73.90 E-value=61 Score=33.76 Aligned_cols=126 Identities=11% Similarity=0.116 Sum_probs=66.6
Q ss_pred HHHHHHHhcCCceEEEEecCceEecHHHHHHHHhhcCCCCCe--EEEEeecCcccccCCCcc---ccCCccccCCC----
Q 015683 220 IFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRV--YIGCMKSGPVLSQKNVKY---HEPEYWKFGEE---- 290 (402)
Q Consensus 220 ~~~~wa~~~~~a~fvlKvDDDvfVnl~~L~~~L~~~~~~~~l--Y~G~~~~~pv~rd~~~Kw---yvp~~w~f~y~---- 290 (402)
.+++++.+..+.+|++..|+|..+..+.|.+.+......+++ ..|.+...+...+....+ +..+.-.+.|.
T Consensus 121 ~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l 200 (439)
T TIGR03111 121 KALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFL 200 (439)
T ss_pred HHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHH
Confidence 355666666788999999999999999998888776433433 224432211100000001 11100000000
Q ss_pred -------CCccccccCCCeeeeCHHHHHHHHHhCCCcCCCCcChHHHHHHHh---cCCCeeecCCCce
Q 015683 291 -------GNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFI---GLEVEHIDDRNMC 348 (402)
Q Consensus 291 -------~~~Yp~Y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~---~L~v~~~d~~~F~ 348 (402)
....+..++|++.++.++++..+---. ...-.||..++.-+. +-.+....+..+.
T Consensus 201 ~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~---~~~i~ED~~l~~rl~~~~g~kv~~~~~a~~~ 265 (439)
T TIGR03111 201 AGRNFESQVNSLFTLSGAFSAFRRETILKTQLYN---SETVGEDTDMTFQIRELLDGKVYLCENAIFY 265 (439)
T ss_pred hhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCC---CCCcCccHHHHHHHHHhcCCeEEECCCCEEE
Confidence 001222367888888888877653211 122389999986553 3334444444443
No 41
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=73.68 E-value=26 Score=30.56 Aligned_cols=132 Identities=11% Similarity=0.030 Sum_probs=69.5
Q ss_pred eEEEEEeecCCCCchhhHHhhHHHHhhCCCEEEecccccCCCchhHHHHHHHHHHhcCCceEEEEecCceEecHHHHHHH
Q 015683 172 IIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATT 251 (402)
Q Consensus 172 i~~~FvlG~s~~~~~~~~~~I~~E~~~~~DIL~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVnl~~L~~~ 251 (402)
..++.+-..+. +.....+.....++..+..+...... . .-..+..+.+....+|++..|+|..+..+.|..+
T Consensus 29 ~eiivvd~~s~---d~~~~~~~~~~~~~~~~~~~~~~~n~---G--~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l 100 (185)
T cd04179 29 YEIIVVDDGST---DGTAEIARELAARVPRVRVIRLSRNF---G--KGAAVRAGFKAARGDIVVTMDADLQHPPEDIPKL 100 (185)
T ss_pred EEEEEEcCCCC---CChHHHHHHHHHhCCCeEEEEccCCC---C--ccHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence 45555554443 22334444445556565444443332 2 1234445555555699999999999998888888
Q ss_pred Hhh-cCCCCCeEEEEee--cC----cccccCCCccccCCccccCCCCCccccccCCCeeeeCHHHHHHHH
Q 015683 252 LSR-HRSKPRVYIGCMK--SG----PVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYIS 314 (402)
Q Consensus 252 L~~-~~~~~~lY~G~~~--~~----pv~rd~~~Kwyvp~~w~f~y~~~~Yp~Y~~G~gYvLS~dla~~I~ 314 (402)
+.. ......+..|... .+ +..+. ...+... +.+..-...-.....|+.+++++++++.+.
T Consensus 101 ~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 101 LEKLLEGGADVVIGSRFVRGGGAGMPLLRR-LGSRLFN--FLIRLLLGVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred HHHHhccCCcEEEEEeecCCCcccchHHHH-HHHHHHH--HHHHHHcCCCCcCCCCceeeeHHHHHHHHH
Confidence 876 4445566666533 11 11100 0000000 000000111223356778899999999985
No 42
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=72.05 E-value=26 Score=34.45 Aligned_cols=138 Identities=13% Similarity=0.042 Sum_probs=75.1
Q ss_pred CCCEEEecccccCCCchhHHHHHHHHHHhcCCceEEEEecCceEecHHHHHHHHhhcCCCCCe-EEEEee---cCcc---
Q 015683 199 HKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRV-YIGCMK---SGPV--- 271 (402)
Q Consensus 199 ~~DIL~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVnl~~L~~~L~~~~~~~~l-Y~G~~~---~~pv--- 271 (402)
+.++..+...++.-= ..=.-.+++.|....+. |++-.++|+.+..+.|.++++.....+.. ..|... .++.
T Consensus 55 ~~~v~~i~~~~NlG~-agg~n~g~~~a~~~~~~-~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~ 132 (305)
T COG1216 55 FPNVRLIENGENLGF-AGGFNRGIKYALAKGDD-YVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYID 132 (305)
T ss_pred CCcEEEEEcCCCccc-hhhhhHHHHHHhcCCCc-EEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchh
Confidence 667766654433210 11111455666543222 99999999999999999998877644333 333321 1111
Q ss_pred cccC-----CCccccCCcccc---CCCCCccccccCCCeeeeCHHHHHHHHHhCCCcCCCCcChHHHHHHHhcCCC
Q 015683 272 LSQK-----NVKYHEPEYWKF---GEEGNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLEV 339 (402)
Q Consensus 272 ~rd~-----~~Kwyvp~~w~f---~y~~~~Yp~Y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v 339 (402)
.+.. ...|.....-.. ..+......+++|++.++++++.+.+-- ...--.+..||+-++.=+...|.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~-~de~~F~y~eD~D~~~R~~~~G~ 207 (305)
T COG1216 133 RRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVGG-FDERFFIYYEDVDLCLRARKAGY 207 (305)
T ss_pred eeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHhCC-CCcccceeehHHHHHHHHHHcCC
Confidence 0100 011111110000 0001112225789999999999999876 22222446999999988866653
No 43
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=65.08 E-value=67 Score=25.84 Aligned_cols=35 Identities=9% Similarity=0.063 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCceEEEEecCceEecHHHHHHHHhh
Q 015683 220 IFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSR 254 (402)
Q Consensus 220 ~~~~wa~~~~~a~fvlKvDDDvfVnl~~L~~~L~~ 254 (402)
..+..+....+.+|++-+|+|..+..+.+...+..
T Consensus 67 ~~~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~ 101 (156)
T cd00761 67 AARNAGLKAARGEYILFLDADDLLLPDWLERLVAE 101 (156)
T ss_pred HHHHHHHHHhcCCEEEEECCCCccCccHHHHHHHH
Confidence 34444555458999999999999998888876443
No 44
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=61.48 E-value=1.6e+02 Score=28.50 Aligned_cols=165 Identities=12% Similarity=0.063 Sum_probs=90.9
Q ss_pred cCceEEEEEeecCCCCchhhHHhhHHHHhhCCCE-EE-ecccccCCCchhHHHHHHHHHHhcCCceEEEEecCceEecHH
Q 015683 169 EKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDF-LR-LEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLG 246 (402)
Q Consensus 169 ~~~i~~~FvlG~s~~~~~~~~~~I~~E~~~~~DI-L~-ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVnl~ 246 (402)
...+.++++-+.+. ......|..-.+.++-+ +. .+......+.+ .+..-+++....+|++..|.|+.+..+
T Consensus 32 ~~~~eiIvvd~~s~---~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a----~arN~g~~~A~~d~l~flD~D~i~~~~ 104 (281)
T PF10111_consen 32 DPDFEIIVVDDGSS---DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRA----KARNIGAKYARGDYLIFLDADCIPSPD 104 (281)
T ss_pred CCCEEEEEEECCCc---hhHHHHHHHHHhccCceEEEEcCCCCCCcCHH----HHHHHHHHHcCCCEEEEEcCCeeeCHH
Confidence 45667777766654 33445566666666655 22 22222122322 233445555689999999999999999
Q ss_pred HHHHHHh---hcCCC-CCeEEEEe-e-c--Cc--ccccCCCcccc--CCccccCCCCCcc-ccccCCCeeeeCHHHHHHH
Q 015683 247 MLATTLS---RHRSK-PRVYIGCM-K-S--GP--VLSQKNVKYHE--PEYWKFGEEGNKY-FRHATGQIYAISKDLATYI 313 (402)
Q Consensus 247 ~L~~~L~---~~~~~-~~lY~G~~-~-~--~p--v~rd~~~Kwyv--p~~w~f~y~~~~Y-p~Y~~G~gYvLS~dla~~I 313 (402)
.+...+. ..... ..++++-+ . + +. ........|.. .+. ......+.+ .....|++.+++++.-..|
T Consensus 105 ~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~i~r~~f~~i 183 (281)
T PF10111_consen 105 FIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLES-FISGKNSLWEFIAFASSCFLINREDFLEI 183 (281)
T ss_pred HHHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHH-HhhccccccccccccceEEEEEHHHHHHh
Confidence 9998888 44322 23333322 1 1 10 00000000100 000 000001111 1233469999999988887
Q ss_pred HHhCCCcCCCCcChHHHHHHHhcCCCee
Q 015683 314 SINQPILHKFANEDVSLGSWFIGLEVEH 341 (402)
Q Consensus 314 ~~~~~~l~~~~~EDV~vG~~l~~L~v~~ 341 (402)
---......+..||.-++.=|...+...
T Consensus 184 GGfDE~f~G~G~ED~D~~~RL~~~~~~~ 211 (281)
T PF10111_consen 184 GGFDERFRGWGYEDIDFGYRLKKAGYKF 211 (281)
T ss_pred CCCCccccCCCcchHHHHHHHHHcCCcE
Confidence 6666666677899999998887666444
No 45
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=57.55 E-value=1.4e+02 Score=26.39 Aligned_cols=111 Identities=11% Similarity=0.074 Sum_probs=59.9
Q ss_pred HHHHHHhcCCceEEEEecCceEecHHHHHHHHhhcC--CCCCeEEEEee--c-CcccccCCCccccCCccccCCCCCccc
Q 015683 221 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR--SKPRVYIGCMK--S-GPVLSQKNVKYHEPEYWKFGEEGNKYF 295 (402)
Q Consensus 221 ~~~wa~~~~~a~fvlKvDDDvfVnl~~L~~~L~~~~--~~~~lY~G~~~--~-~pv~rd~~~Kwyvp~~w~f~y~~~~Yp 295 (402)
.+.++.+....+|++..|+|..+..+.|...++... ++..+..|... . .... ...++.+. |.... .+.
T Consensus 74 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~-~~~~~---~~~ 146 (202)
T cd04184 74 ATNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKR---SEPFFKPD-WSPDL---LLS 146 (202)
T ss_pred HHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCE---eccccCCC-CCHHH---hhh
Confidence 455555556789999999999999988888887652 23333333221 0 0000 00111111 11100 111
Q ss_pred cccCCCeeeeCHHHHHHHHHhCCCcCCCCcChHHHHHHHhcCCCe
Q 015683 296 RHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLEVE 340 (402)
Q Consensus 296 ~Y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~ 340 (402)
.-+.|++-+++++++..+---... ....||.-++.-+...|.+
T Consensus 147 ~~~~~~~~~~~r~~~~~iggf~~~--~~~~eD~~l~~rl~~~g~~ 189 (202)
T cd04184 147 QNYIGHLLVYRRSLVRQVGGFREG--FEGAQDYDLVLRVSEHTDR 189 (202)
T ss_pred cCCccceEeEEHHHHHHhCCCCcC--cccchhHHHHHHHHhccce
Confidence 123455667888888776432221 2357999888777655533
No 46
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=56.95 E-value=59 Score=31.06 Aligned_cols=126 Identities=8% Similarity=-0.056 Sum_probs=62.1
Q ss_pred HHHHHHhcCCceEEEEecCceEecHHHHHHHHhhcCCCC-C-eEEEEe-ec-CcccccC---CCccccCCccccCCC-CC
Q 015683 221 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKP-R-VYIGCM-KS-GPVLSQK---NVKYHEPEYWKFGEE-GN 292 (402)
Q Consensus 221 ~~~wa~~~~~a~fvlKvDDDvfVnl~~L~~~L~~~~~~~-~-lY~G~~-~~-~pv~rd~---~~Kwyvp~~w~f~y~-~~ 292 (402)
++++|.+ -+++|++..|||..+..+.|...+......+ . ..+|.. .. ......+ ...+..+. +..... ..
T Consensus 65 Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 142 (281)
T TIGR01556 65 GLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQ-ISLDGLTTP 142 (281)
T ss_pred HHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceee-ecccccCCc
Confidence 5566653 3789999999999999877777776543221 2 223321 11 0000000 00000000 000000 00
Q ss_pred ccccccCCCeeeeCHHHHHHHHHhCCCcCCCCcChHHHHHHHhcCC--CeeecCCCcee
Q 015683 293 KYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLE--VEHIDDRNMCC 349 (402)
Q Consensus 293 ~Yp~Y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~~d~~~F~~ 349 (402)
.-..++.++|.++++++.+.+---...+ .+..||+-+..=+...| +..+++..+.|
T Consensus 143 ~~~~~~~~sg~li~~~~~~~iG~fde~~-fi~~~D~e~~~R~~~~G~~i~~~~~~~~~H 200 (281)
T TIGR01556 143 QKTSFLISSGCLITREVYQRLGMMDEEL-FIDHVDTEWSLRAQNYGIPLYIDPDIVLEH 200 (281)
T ss_pred eeccEEEcCcceeeHHHHHHhCCccHhh-cccchHHHHHHHHHHCCCEEEEeCCEEEEE
Confidence 1123445666789999998874322222 23468987765554433 44444444433
No 47
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=55.98 E-value=85 Score=28.18 Aligned_cols=107 Identities=15% Similarity=0.074 Sum_probs=59.0
Q ss_pred HHHHHhcCCceEEEEecCceEecHHHHHHHHhhcCCCCCeEEEEee----c-CcccccCCCccccCCccccCCCCCcccc
Q 015683 222 FSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMK----S-GPVLSQKNVKYHEPEYWKFGEEGNKYFR 296 (402)
Q Consensus 222 ~~wa~~~~~a~fvlKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~----~-~pv~rd~~~Kwyvp~~w~f~y~~~~Yp~ 296 (402)
+..+......+|++.+|+|..+..+.|...+....... ..+|... . ....+....++..... .... +
T Consensus 64 ~n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~ 135 (221)
T cd02522 64 MNAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRADG-AVAGAFRLRFDDPGPRLRLLELGANLRSR------LFGL-P 135 (221)
T ss_pred HHHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCC-cEEEEEEeeecCCccchhhhhhcccceec------ccCC-C
Confidence 34444455689999999999999887777666554333 3344321 1 1110000011111110 1111 1
Q ss_pred ccCCCeeeeCHHHHHHHHHhCCCcCCCCcChHHHHHHHhcCCCe
Q 015683 297 HATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLEVE 340 (402)
Q Consensus 297 Y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~ 340 (402)
.++.+.++++++...+-.-.... ..||.-++.=+...|-.
T Consensus 136 -~~~~~~~~r~~~~~~~G~fd~~~---~~ED~d~~~r~~~~G~~ 175 (221)
T cd02522 136 -YGDQGLFIRRELFEELGGFPELP---LMEDVELVRRLRRRGRP 175 (221)
T ss_pred -cCCceEEEEHHHHHHhCCCCccc---cccHHHHHHHHHhCCCE
Confidence 24568899999887774332222 78999888777655533
No 48
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=55.81 E-value=67 Score=32.12 Aligned_cols=134 Identities=7% Similarity=0.038 Sum_probs=70.4
Q ss_pred ceEEEEEeecCCCCchhhHHhhHHHHhhCCC-EEEecccccCCCchhHHHHHHHHHHhcCCceEEEEecCceEecHHHHH
Q 015683 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKD-FLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLA 249 (402)
Q Consensus 171 ~i~~~FvlG~s~~~~~~~~~~I~~E~~~~~D-IL~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVnl~~L~ 249 (402)
.+.+++|-..|.+ .+. +.+++-.+.+++ ++......++ -|.- ++..+.++.+.+|++-.|.|.-.+++.+.
T Consensus 38 ~~EIIvVDDgS~D--~T~-~il~~~~~~~~~~v~~i~~~~n~----G~~~-A~~~G~~~A~gd~vv~~DaD~q~~p~~i~ 109 (325)
T PRK10714 38 EYEILLIDDGSSD--NSA-EMLVEAAQAPDSHIVAILLNRNY----GQHS-AIMAGFSHVTGDLIITLDADLQNPPEEIP 109 (325)
T ss_pred CEEEEEEeCCCCC--cHH-HHHHHHHhhcCCcEEEEEeCCCC----CHHH-HHHHHHHhCCCCEEEEECCCCCCCHHHHH
Confidence 4678888776652 322 223322333444 4433333332 1221 23333344578999999999999999888
Q ss_pred HHHhhcCCCCCeEEEEeec--CcccccCCCccccCCccccCCCCCccccccCCCeeeeCHHHHHHHHH
Q 015683 250 TTLSRHRSKPRVYIGCMKS--GPVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISI 315 (402)
Q Consensus 250 ~~L~~~~~~~~lY~G~~~~--~pv~rd~~~Kwyvp~~w~f~y~~~~Yp~Y~~G~gYvLS~dla~~I~~ 315 (402)
++++......++..|.... .+..+.-.++.+----.. . .+..++.+.+| .-++++++++.+..
T Consensus 110 ~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~-~-~g~~~~d~~~g-fr~~~r~~~~~l~~ 174 (325)
T PRK10714 110 RLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQR-T-TGKAMGDYGCM-LRAYRRHIVDAMLH 174 (325)
T ss_pred HHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHH-H-cCCCCCCCCcC-eEEEcHHHHHHHHH
Confidence 8888764334555454321 233332222222110000 0 13345544333 35899999999864
No 49
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=53.82 E-value=1.3e+02 Score=27.30 Aligned_cols=75 Identities=12% Similarity=0.144 Sum_probs=45.3
Q ss_pred eEEEEEeecCCCCchhhHHhhHHHHhhCCCEEEecccccCCCchhHHHHHHHHHHhcCCceEEEEecCceEecHHHHHHH
Q 015683 172 IIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATT 251 (402)
Q Consensus 172 i~~~FvlG~s~~~~~~~~~~I~~E~~~~~DIL~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVnl~~L~~~ 251 (402)
..+++|...+. +.....+ .+...+..+.... .+ | .-|.. .+..+....+.+|++..|+|+.+..+.|...
T Consensus 29 ~eiivvdd~s~---d~~~~~l-~~~~~~~~~~v~~-~~---~-~g~~~-a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l 98 (235)
T cd06434 29 LEIIVVTDGDD---EPYLSIL-SQTVKYGGIFVIT-VP---H-PGKRR-ALAEGIRHVTTDIVVLLDSDTVWPPNALPEM 98 (235)
T ss_pred CEEEEEeCCCC---hHHHHHH-HhhccCCcEEEEe-cC---C-CChHH-HHHHHHHHhCCCEEEEECCCceeChhHHHHH
Confidence 35666665543 2222333 3445566655543 11 1 22433 2334444458999999999999999998888
Q ss_pred HhhcC
Q 015683 252 LSRHR 256 (402)
Q Consensus 252 L~~~~ 256 (402)
+....
T Consensus 99 ~~~~~ 103 (235)
T cd06434 99 LKPFE 103 (235)
T ss_pred HHhcc
Confidence 87775
No 50
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=52.74 E-value=1.8e+02 Score=26.50 Aligned_cols=120 Identities=14% Similarity=0.083 Sum_probs=60.8
Q ss_pred HHHHHHhcCCceEEEEecCceEecHHHHHHHHhhcCCCCCeEEEEeecCcccccCCCcccc-----CCccccCC-----C
Q 015683 221 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHE-----PEYWKFGE-----E 290 (402)
Q Consensus 221 ~~~wa~~~~~a~fvlKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~~~pv~rd~~~Kwyv-----p~~w~f~y-----~ 290 (402)
.+..+.+..+.+|++.+|.|+.+..+.|...+... ..+. +|.+.+.....+....|.. +..+.+.. .
T Consensus 78 a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~-~~~~--v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (232)
T cd06437 78 ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYF-ADPK--LGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARS 154 (232)
T ss_pred HHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhh-cCCC--eEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHh
Confidence 34556666689999999999999999888855433 2333 2332211111111111110 00000000 0
Q ss_pred CCccccccCCCeeeeCHHHHHHHHHhCCCcCCCCcChHHHHHHHhcCC--CeeecCCC
Q 015683 291 GNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLE--VEHIDDRN 346 (402)
Q Consensus 291 ~~~Yp~Y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~~d~~~ 346 (402)
.......+.|++-++.+++...+---. .....||+.++.-+...| +..+++..
T Consensus 155 ~~~~~~~~~g~~~~~rr~~~~~vgg~~---~~~~~ED~~l~~rl~~~G~~~~~~~~~~ 209 (232)
T cd06437 155 STGLFFNFNGTAGVWRKECIEDAGGWN---HDTLTEDLDLSYRAQLKGWKFVYLDDVV 209 (232)
T ss_pred hcCCeEEeccchhhhhHHHHHHhCCCC---CCcchhhHHHHHHHHHCCCeEEEeccce
Confidence 011111235666677888777663211 123479999998886544 44444433
No 51
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=49.49 E-value=56 Score=33.30 Aligned_cols=84 Identities=12% Similarity=0.240 Sum_probs=51.8
Q ss_pred HHHHHHHhcCCceEEEEecCceEecHH---HHHHHHhhcCCCCCeEEEEeecCcccccCCCccccCCccccCCCCCccc-
Q 015683 220 IFFSTAVAKWDADFYVKVDDDVHVNLG---MLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFGEEGNKYF- 295 (402)
Q Consensus 220 ~~~~wa~~~~~a~fvlKvDDDvfVnl~---~L~~~L~~~~~~~~lY~G~~~~~pv~rd~~~Kwyvp~~w~f~y~~~~Yp- 295 (402)
.++.|+....++++++-+|||..+.++ -+.+.|..+...++++ |+.+-. +.+.+..+.. . +...|.
T Consensus 87 ~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~--~ISa~N---dnG~~~~~~~----~-~~~lyrs 156 (334)
T cd02514 87 WALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLW--CISAWN---DNGKEHFVDD----T-PSLLYRT 156 (334)
T ss_pred HHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEE--EEEeec---cCCcccccCC----C-cceEEEe
Confidence 366777665689999999999999998 4456666665566665 332110 1111111100 0 111233
Q ss_pred cccCCCeeeeCHHHHHHH
Q 015683 296 RHATGQIYAISKDLATYI 313 (402)
Q Consensus 296 ~Y~~G~gYvLS~dla~~I 313 (402)
.|+.|.|+++.+++-..+
T Consensus 157 ~ff~glGWml~r~~W~e~ 174 (334)
T cd02514 157 DFFPGLGWMLTRKLWKEL 174 (334)
T ss_pred cCCCchHHHHHHHHHHHh
Confidence 467899999999998887
No 52
>PHA01631 hypothetical protein
Probab=47.99 E-value=56 Score=30.15 Aligned_cols=92 Identities=15% Similarity=0.179 Sum_probs=53.4
Q ss_pred CCCEEEecccccCCCchhHHHHHHHHHHh---cCCceEEEEecCceEecHHHHHHHHhhcCCCCCeEEEEeecCcccccC
Q 015683 199 HKDFLRLEHIEGYHELSAKTKIFFSTAVA---KWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQK 275 (402)
Q Consensus 199 ~~DIL~ldf~Dsy~nLt~Kt~~~~~wa~~---~~~a~fvlKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~~~pv~rd~ 275 (402)
+.+|+...--..++. +....++..+.+ .-+-+.++.+|.|++|+.-. .. .+.+.+|.=|... +
T Consensus 39 ~~~Ii~~~t~~e~Rr--~RIAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~~--~~----~~~~~v~t~CiPA---~--- 104 (176)
T PHA01631 39 QEKIIWIMTNTEIRW--LRIAKQLLTIVNFAKNIEDDIIAIIDSDLIIPNLR--EI----IPNERVFTPCYWL---Y--- 104 (176)
T ss_pred CCceEEecccchhHH--HHHHHHHHHHHHhhccCCccEEEEeccceEecCcc--cc----ccCCCccceeeee---e---
Confidence 445555442222222 334444455544 35778888999999987432 11 1333455445321 0
Q ss_pred CCccccCCccccCCCCCccccccCCCeeeeCHHHHHHHHHh
Q 015683 276 NVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISIN 316 (402)
Q Consensus 276 ~~Kwyvp~~w~f~y~~~~Yp~Y~~G~gYvLS~dla~~I~~~ 316 (402)
.| |.+.+-+||.|.-|++.+..+..+...
T Consensus 105 -~k-----------p~~~v~~FC~sTNf~~pr~~l~~l~~v 133 (176)
T PHA01631 105 -YD-----------WANEIRPFCSGTNYIFRKSLLPYLEYT 133 (176)
T ss_pred -ec-----------CCCcEEEEEccccEEeeHHHhHHHHHH
Confidence 01 123566889999999999999988664
No 53
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=45.05 E-value=2.1e+02 Score=25.68 Aligned_cols=89 Identities=13% Similarity=0.047 Sum_probs=52.2
Q ss_pred CceEEEEEeecCCCCchhhHHhhHHHHhhCCCEEE-ecccccCCCchhHHHHHHHHHHhcCCceEEEEecCceEecHHHH
Q 015683 170 KGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLR-LEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGML 248 (402)
Q Consensus 170 ~~i~~~FvlG~s~~~~~~~~~~I~~E~~~~~DIL~-ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVnl~~L 248 (402)
..+.++.|-+.|.+ .....+++..++++..++ +.... |.- +. .++..+.+....+|++..|+|..+..+.|
T Consensus 29 ~~~eiivvdd~S~D---~t~~~~~~~~~~~~~~i~~i~~~~---n~G-~~-~a~~~g~~~a~gd~i~~ld~D~~~~~~~l 100 (211)
T cd04188 29 FSYEIIVVDDGSKD---GTAEVARKLARKNPALIRVLTLPK---NRG-KG-GAVRAGMLAARGDYILFADADLATPFEEL 100 (211)
T ss_pred CCEEEEEEeCCCCC---chHHHHHHHHHhCCCcEEEEEccc---CCC-cH-HHHHHHHHHhcCCEEEEEeCCCCCCHHHH
Confidence 34567777666642 223344444555665422 22222 221 22 23334444456799999999999999988
Q ss_pred HHHHhh-cCCCCCeEEEEe
Q 015683 249 ATTLSR-HRSKPRVYIGCM 266 (402)
Q Consensus 249 ~~~L~~-~~~~~~lY~G~~ 266 (402)
..++.. ......+.+|..
T Consensus 101 ~~l~~~~~~~~~~~v~g~r 119 (211)
T cd04188 101 EKLEEALKTSGYDIAIGSR 119 (211)
T ss_pred HHHHHHHhccCCcEEEEEe
Confidence 888886 334456777764
No 54
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=42.57 E-value=34 Score=32.25 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=60.1
Q ss_pred CCceEEEEecCceEecHHHHHHHHhhcCCCCCe--EEEEeec-Cc---ccc-cCCCccccCCc-cccCCCCCccccccCC
Q 015683 229 WDADFYVKVDDDVHVNLGMLATTLSRHRSKPRV--YIGCMKS-GP---VLS-QKNVKYHEPEY-WKFGEEGNKYFRHATG 300 (402)
Q Consensus 229 ~~a~fvlKvDDDvfVnl~~L~~~L~~~~~~~~l--Y~G~~~~-~p---v~r-d~~~Kwyvp~~-w~f~y~~~~Yp~Y~~G 300 (402)
.+.+|++.+|.|+.+..+.|...+......+++ ..|.+.. .+ .+. -..--|..... .+.....-.+...+.|
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~~~~G 151 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGFVTCLPG 151 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCceEECCC
Confidence 489999999999999999988887766433443 3343321 11 000 00000000000 0000011145566889
Q ss_pred CeeeeCHHHHHHHHHhCCC----------c-------CCCCcChHHHHHHHhcCC
Q 015683 301 QIYAISKDLATYISINQPI----------L-------HKFANEDVSLGSWFIGLE 338 (402)
Q Consensus 301 ~gYvLS~dla~~I~~~~~~----------l-------~~~~~EDV~vG~~l~~L~ 338 (402)
+++++.+++.+.+...... + .....||..++..+...|
T Consensus 152 ~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G 206 (244)
T cd04190 152 CFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAG 206 (244)
T ss_pred ceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccC
Confidence 9999999987765322110 0 122479999988886544
No 55
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=38.54 E-value=1.2e+02 Score=30.43 Aligned_cols=80 Identities=16% Similarity=0.119 Sum_probs=58.0
Q ss_pred cCceEEEEEeecCCCCchhhHHhhHHHHhhCCCEEEeccc--ccCCCchhHHHHHHHHHHhcCCceEEEEecCceEecHH
Q 015683 169 EKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHI--EGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLG 246 (402)
Q Consensus 169 ~~~i~~~FvlG~s~~~~~~~~~~I~~E~~~~~DIL~ldf~--Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVnl~ 246 (402)
..++.++|+-|.+ ..++.|..=.....-++-+++. +++..-+.-...+..|+.+.++.++++..|-|+|...+
T Consensus 36 ~~~~~vi~~~~~~-----~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~d 110 (346)
T COG4092 36 SDITMVICLRAHE-----VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSSD 110 (346)
T ss_pred cccEEEEEEecch-----hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccHH
Confidence 4566677776654 3556666666666667777764 34443344445577888888999999999999999999
Q ss_pred HHHHHHh
Q 015683 247 MLATTLS 253 (402)
Q Consensus 247 ~L~~~L~ 253 (402)
+..+.|.
T Consensus 111 nF~k~l~ 117 (346)
T COG4092 111 NFAKMLS 117 (346)
T ss_pred HHHHHHH
Confidence 9999883
No 56
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=36.09 E-value=30 Score=32.68 Aligned_cols=29 Identities=38% Similarity=0.588 Sum_probs=23.5
Q ss_pred cchhHHHHHHHHHHHHHHHhc------CCCCCCCC
Q 015683 12 STKWIPFVCLFCFALGILFSN------LTWNPPES 40 (402)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~ 40 (402)
+-...+++|-.||++|++|++ -||+.+.+
T Consensus 6 ~~~t~lIl~~tsF~lGvlf~~~pyD~~~Lw~~~~t 40 (196)
T smart00786 6 SFGTALIIGSTSFFLGILFANFPYDYPLLWSPDPT 40 (196)
T ss_pred ccccchhhhhHHHHHHHHHhcCccccchhcCCCCC
Confidence 445679999999999999998 45877654
No 57
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=34.98 E-value=3.7e+02 Score=24.90 Aligned_cols=157 Identities=11% Similarity=0.071 Sum_probs=78.3
Q ss_pred ceEEEEEeecCCCCchhhHHhhHHHHhhCCC--EEEecccccCCCchhHHHHHHHHHHhcCCceEEEEecCceEecHHHH
Q 015683 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKD--FLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGML 248 (402)
Q Consensus 171 ~i~~~FvlG~s~~~~~~~~~~I~~E~~~~~D--IL~ldf~Dsy~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVnl~~L 248 (402)
.+.+++|-..|.+ . ..+.+.+-.++|++ +...... .|.. | -..+..+......+|++..|+|..+.++.|
T Consensus 40 ~~eiivvDdgS~D--~-t~~i~~~~~~~~~~~~v~~~~~~---~n~G-~-~~a~n~g~~~a~g~~i~~lD~D~~~~~~~l 111 (243)
T PLN02726 40 DFEIIVVDDGSPD--G-TQDVVKQLQKVYGEDRILLRPRP---GKLG-L-GTAYIHGLKHASGDFVVIMDADLSHHPKYL 111 (243)
T ss_pred CeEEEEEeCCCCC--C-HHHHHHHHHHhcCCCcEEEEecC---CCCC-H-HHHHHHHHHHcCCCEEEEEcCCCCCCHHHH
Confidence 5677777666542 2 22333333344543 2222221 2222 1 123444444457899999999999999888
Q ss_pred HHHHhhcC-CCCCeEEEEee--cCcc-----cccCCCcc--ccCCccccCCCCCccccccCCCeeeeCHHHHHHHHHhCC
Q 015683 249 ATTLSRHR-SKPRVYIGCMK--SGPV-----LSQKNVKY--HEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISINQP 318 (402)
Q Consensus 249 ~~~L~~~~-~~~~lY~G~~~--~~pv-----~rd~~~Kw--yvp~~w~f~y~~~~Yp~Y~~G~gYvLS~dla~~I~~~~~ 318 (402)
..++.... ....+..|... .+.. .|.-.++. +.- .+.+ + ..-....|++.++++++++.+.....
T Consensus 112 ~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~-~~~~---~-~~~~d~~g~~~~~rr~~~~~i~~~~~ 186 (243)
T PLN02726 112 PSFIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLA-QTLL---W-PGVSDLTGSFRLYKRSALEDLVSSVV 186 (243)
T ss_pred HHHHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHH-HHHh---C-CCCCcCCCcccceeHHHHHHHHhhcc
Confidence 88776653 34456666532 1100 00000000 000 0000 1 11123568888999999999865322
Q ss_pred CcCCCCcChHHHHHHHh--cCCCeee
Q 015683 319 ILHKFANEDVSLGSWFI--GLEVEHI 342 (402)
Q Consensus 319 ~l~~~~~EDV~vG~~l~--~L~v~~~ 342 (402)
. ..| ..|.-+...+. |..+..+
T Consensus 187 ~-~~~-~~~~el~~~~~~~g~~i~~v 210 (243)
T PLN02726 187 S-KGY-VFQMEIIVRASRKGYRIEEV 210 (243)
T ss_pred C-CCc-EEehHHHHHHHHcCCcEEEe
Confidence 2 122 23555554443 4445444
No 58
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=33.97 E-value=7.1e+02 Score=27.86 Aligned_cols=132 Identities=14% Similarity=0.110 Sum_probs=72.0
Q ss_pred CchhHHHHHHHHHHhcCCceEEEEecCceEecHHHHHHHHhhcCCCCCe-EEEEee---c-CcccccCCCccccCCcccc
Q 015683 213 ELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRV-YIGCMK---S-GPVLSQKNVKYHEPEYWKF 287 (402)
Q Consensus 213 nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVnl~~L~~~L~~~~~~~~l-Y~G~~~---~-~pv~rd~~~Kwyvp~~w~f 287 (402)
|.-.|.- .++.+.+..+.+|++..|.|..+..+.|.+.+......+++ .++... + .+..+.-......|.+...
T Consensus 212 n~~~KAg-nLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~ 290 (713)
T TIGR03030 212 NVHAKAG-NINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENEL 290 (713)
T ss_pred CCCCChH-HHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHH
Confidence 4345644 35666677788999999999999998888877665333443 111110 1 1111110000001100000
Q ss_pred CC----CCC--ccccccCCCeeeeCHHHHHHHHHhCCCcCCCCcChHHHHHHHhcCC--CeeecCCCce
Q 015683 288 GE----EGN--KYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLE--VEHIDDRNMC 348 (402)
Q Consensus 288 ~y----~~~--~Yp~Y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~~d~~~F~ 348 (402)
.| ++. .-..++.|++.++.+++...+---. .....||..+|.-+...| +...++....
T Consensus 291 f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~---~~~vtED~~l~~rL~~~G~~~~y~~~~~~~ 356 (713)
T TIGR03030 291 FYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIA---GETVTEDAETALKLHRRGWNSAYLDRPLIA 356 (713)
T ss_pred HHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCC---CCCcCcHHHHHHHHHHcCCeEEEecccccc
Confidence 00 010 0123567999999999988763211 122479999999886555 4455554443
No 59
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=31.82 E-value=53 Score=25.13 Aligned_cols=28 Identities=11% Similarity=0.326 Sum_probs=19.4
Q ss_pred CCccCCCcccccchhHHHHHHHHHHHHHHHh
Q 015683 1 MKYRTSTTTIISTKWIPFVCLFCFALGILFS 31 (402)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (402)
||.|..++ -+||+|++.+..|+.=++++
T Consensus 1 ~r~k~~~~---mtriVLLISfiIlfgRl~Y~ 28 (59)
T PF11119_consen 1 MRRKKNSR---MTRIVLLISFIILFGRLIYS 28 (59)
T ss_pred CCCcccch---HHHHHHHHHHHHHHHHHHHH
Confidence 56666555 46899999888887645544
No 60
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=29.53 E-value=7.4e+02 Score=26.69 Aligned_cols=107 Identities=14% Similarity=-0.024 Sum_probs=58.2
Q ss_pred CceEEEEecCceEecHHHHHHHHhhcCCCCCeEEEEeecCcccccCCCcc----ccCCcc----ccCC--CCCccccccC
Q 015683 230 DADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKY----HEPEYW----KFGE--EGNKYFRHAT 299 (402)
Q Consensus 230 ~a~fvlKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~~~pv~rd~~~Kw----yvp~~w----~f~y--~~~~Yp~Y~~ 299 (402)
++++++-.|-|..+.++.|..+- ...+...+.-.-+...+ .+.+.| |.-+.. +... ..-.-+--+.
T Consensus 158 ~~d~vvi~DAD~~v~Pd~Lr~~~-~~~~~~~~VQ~pv~~~~---~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~ 233 (504)
T PRK14716 158 RFAIIVLHDAEDVIHPLELRLYN-YLLPRHDFVQLPVFSLP---RDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSA 233 (504)
T ss_pred CcCEEEEEcCCCCcCccHHHHHH-hhcCCCCEEecceeccC---CchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Confidence 46999999999999999987543 33233322111111110 011111 110000 0000 0001223378
Q ss_pred CCeeeeCHHHHHHHHHhC---CCcCCCCcChHHHHHHHhcCCCe
Q 015683 300 GQIYAISKDLATYISINQ---PILHKFANEDVSLGSWFIGLEVE 340 (402)
Q Consensus 300 G~gYvLS~dla~~I~~~~---~~l~~~~~EDV~vG~~l~~L~v~ 340 (402)
|.++++++++++.+.... ..-...--||.-+|.-+...|.+
T Consensus 234 Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~G~r 277 (504)
T PRK14716 234 GVGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRAGFR 277 (504)
T ss_pred CeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHCCCE
Confidence 999999999999985422 12234568999999888655544
No 61
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=29.19 E-value=4.1e+02 Score=23.64 Aligned_cols=90 Identities=11% Similarity=0.017 Sum_probs=50.2
Q ss_pred HHHHhcCCceEEEEecCceEecHHHHHHHHhh-cCCCCCeEEEEee-cCcccccCCCcc--ccC---CccccCCCCCccc
Q 015683 223 STAVAKWDADFYVKVDDDVHVNLGMLATTLSR-HRSKPRVYIGCMK-SGPVLSQKNVKY--HEP---EYWKFGEEGNKYF 295 (402)
Q Consensus 223 ~wa~~~~~a~fvlKvDDDvfVnl~~L~~~L~~-~~~~~~lY~G~~~-~~pv~rd~~~Kw--yvp---~~w~f~y~~~~Yp 295 (402)
....+....+|++..|+|..+..+.|..++.. ..+...+..|... ..... .....+ +.+ ..+. ......-.
T Consensus 71 n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~ 148 (224)
T cd06442 71 IEGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGV-EGWGLKRKLISRGANLLA-RLLLGRKV 148 (224)
T ss_pred HHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCcc-CCCcHHHHHHHHHHHHHH-HHHcCCCC
Confidence 33333345699999999999998888888876 3455566666532 11110 000000 000 0000 00001123
Q ss_pred cccCCCeeeeCHHHHHHHH
Q 015683 296 RHATGQIYAISKDLATYIS 314 (402)
Q Consensus 296 ~Y~~G~gYvLS~dla~~I~ 314 (402)
+.++|++.++++++++.+-
T Consensus 149 ~~~~~~~~~~~r~~~~~ig 167 (224)
T cd06442 149 SDPTSGFRAYRREVLEKLI 167 (224)
T ss_pred CCCCCccchhhHHHHHHHh
Confidence 4577888899999999987
No 62
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=27.65 E-value=60 Score=24.86 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhc
Q 015683 16 IPFVCLFCFALGILFSN 32 (402)
Q Consensus 16 ~~~~~~~~~~~~~~~~~ 32 (402)
++++|++|+.+|.+++-
T Consensus 42 ~~~~c~~S~~lG~~~~~ 58 (60)
T PF06072_consen 42 VVALCVLSGGLGALVAW 58 (60)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 35889999999998763
No 63
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=26.77 E-value=32 Score=32.53 Aligned_cols=29 Identities=38% Similarity=0.667 Sum_probs=23.5
Q ss_pred cchhHHHHHHHHHHHHHHHhc------CCCCCCCC
Q 015683 12 STKWIPFVCLFCFALGILFSN------LTWNPPES 40 (402)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~ 40 (402)
+-+..+++|-.||++|++|++ -||+.+.+
T Consensus 6 ~~~t~lIi~stsF~LG~lf~~~~yD~~~Lw~~~~t 40 (196)
T PF08229_consen 6 SFGTGLIICSTSFLLGVLFSNWPYDYPTLWSSPPT 40 (196)
T ss_pred ceeeeeehHhhHHHHHHHHHcccchhHHhcCCCCC
Confidence 445678999999999999998 45888655
No 64
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=26.66 E-value=3.4e+02 Score=26.95 Aligned_cols=96 Identities=13% Similarity=0.115 Sum_probs=56.9
Q ss_pred cCceEEEEEeecCCCCchhhHHhhHHH----------HhhCCCEEEe--cccccC-------CC-----chhHHHHHH-H
Q 015683 169 EKGIIIRFMIGHSATSNSILDKAIDSE----------DAQHKDFLRL--EHIEGY-------HE-----LSAKTKIFF-S 223 (402)
Q Consensus 169 ~~~i~~~FvlG~s~~~~~~~~~~I~~E----------~~~~~DIL~l--df~Dsy-------~n-----Lt~Kt~~~~-~ 223 (402)
...|.+-|+++.+.. ++...+.|+.+ ...|+.|.++ ||.+.- +. .-.+.++-- .
T Consensus 54 ~~lIsLgfLv~d~~e-~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN 132 (269)
T PF03452_consen 54 HELISLGFLVSDSSE-FDNTLKILEAALKKLQSHGPESKRFRSITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARN 132 (269)
T ss_pred chheEEEEEcCCCch-hHHHHHHHHHHHHHHhccCcccCCcceEEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHH
Confidence 456889999999873 23333334433 3446666554 554321 11 111222211 1
Q ss_pred HHHh---cCCceEEEEecCceEecHHHHHHHHhhcCC---CCCeEEEE
Q 015683 224 TAVA---KWDADFYVKVDDDVHVNLGMLATTLSRHRS---KPRVYIGC 265 (402)
Q Consensus 224 wa~~---~~~a~fvlKvDDDvfVnl~~L~~~L~~~~~---~~~lY~G~ 265 (402)
|+.. .+..+||+-.|-|+.-.++.|++.|..++. -|++|.+.
T Consensus 133 ~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~~kdIivPn~~~~~ 180 (269)
T PF03452_consen 133 FLLSSALGPWHSWVLWLDADIVETPPTLIQDLIAHDKDIIVPNCWRRY 180 (269)
T ss_pred HHHHhhcCCcccEEEEEecCcccCChHHHHHHHhCCCCEEccceeecc
Confidence 3222 368999999999999999999999988753 24555543
No 65
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=25.94 E-value=4.9e+02 Score=26.06 Aligned_cols=20 Identities=35% Similarity=0.722 Sum_probs=16.1
Q ss_pred CceEEEEecCceEecHHHHH
Q 015683 230 DADFYVKVDDDVHVNLGMLA 249 (402)
Q Consensus 230 ~a~fvlKvDDDvfVnl~~L~ 249 (402)
.++||+-..|||.....-+.
T Consensus 169 ~~~YyL~LEDDVia~~~f~~ 188 (297)
T PF04666_consen 169 LGDYYLQLEDDVIAAPGFLS 188 (297)
T ss_pred cCCeEEEecCCeEechhHHH
Confidence 68899999999988765433
No 66
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=25.36 E-value=6.5e+02 Score=28.31 Aligned_cols=198 Identities=14% Similarity=0.122 Sum_probs=99.4
Q ss_pred CCCeEEEEEEECCCCCHH-HHHHHHHhhccCchhhhhhhccCceEEEEEeecCCCCchhh--HHhhHHHHhhCC---CEE
Q 015683 130 RPKVFVVIGINTAFSSRK-RRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSIL--DKAIDSEDAQHK---DFL 203 (402)
Q Consensus 130 ~~~~~llI~V~S~p~~~~-rR~aIR~TW~~~~~~l~~l~~~~~i~~~FvlG~s~~~~~~~--~~~I~~E~~~~~---DIL 203 (402)
.....+.|+|.+--...+ -+..|+.+..+-.. ......+.+ |++..+.+++-.. ..++.+=.++|+ .|.
T Consensus 121 ~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~----~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~ 195 (691)
T PRK05454 121 PPEARTAILMPIYNEDPARVFAGLRAMYESLAA----TGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEGRIF 195 (691)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHHHh----cCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCCcEE
Confidence 334556666666544443 24667777654221 001223444 8887665322111 111222233443 333
Q ss_pred EecccccCCCchhHHHHHHHHHHhc-CCceEEEEecCceEecHHHHHHHHhhcCCCCCeEEEEeecCcccccCCC---cc
Q 015683 204 RLEHIEGYHELSAKTKIFFSTAVAK-WDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNV---KY 279 (402)
Q Consensus 204 ~ldf~Dsy~nLt~Kt~~~~~wa~~~-~~a~fvlKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~~~pv~rd~~~---Kw 279 (402)
.. .--.|.-.|.-..-.+.... .+.+|++-.|-|+.+..+.|.+.+......++ +|-+...+...+..+ ++
T Consensus 196 yr---~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQt~~~~~n~~slfaR~ 270 (691)
T PRK05454 196 YR---RRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQTLPVAVGADTLFARL 270 (691)
T ss_pred EE---ECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEeCCccCcCCCCHHHHH
Confidence 32 22234345666554444331 46799999999999999999998876543343 354432221111111 00
Q ss_pred -------ccC------CccccCCCCCccccccCCCeeeeCHHHHHHHHHhCCCc-------CCCCcChHHHHHHHhcCC-
Q 015683 280 -------HEP------EYWKFGEEGNKYFRHATGQIYAISKDLATYISINQPIL-------HKFANEDVSLGSWFIGLE- 338 (402)
Q Consensus 280 -------yvp------~~w~f~y~~~~Yp~Y~~G~gYvLS~dla~~I~~~~~~l-------~~~~~EDV~vG~~l~~L~- 338 (402)
|-| ..|. + +.. ...|...|+.++....+.. -..+ ...--||...|..+...|
T Consensus 271 qqf~~~~y~~~~~~G~~~w~-~--~~g---~f~G~naIiR~~af~~~~g-lp~L~g~~p~~~~~LseD~~~a~~l~~~Gy 343 (691)
T PRK05454 271 QQFATRVYGPLFAAGLAWWQ-G--GEG---NYWGHNAIIRVKAFAEHCG-LPPLPGRGPFGGHILSHDFVEAALMRRAGW 343 (691)
T ss_pred HHHHHHHHHHHHHhhhhhhc-c--Ccc---ccccceEEEEHHHHHHhcC-CccccccCCCCCCcccHHHHHHHHHHHCCC
Confidence 100 0111 0 001 1247777888887665431 1111 234578999999986554
Q ss_pred -CeeecC
Q 015683 339 -VEHIDD 344 (402)
Q Consensus 339 -v~~~d~ 344 (402)
+..+++
T Consensus 344 rV~~~pd 350 (691)
T PRK05454 344 GVWLAPD 350 (691)
T ss_pred EEEEcCc
Confidence 556655
No 67
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=24.82 E-value=5.5e+02 Score=23.60 Aligned_cols=121 Identities=12% Similarity=0.040 Sum_probs=66.3
Q ss_pred HHHHHHHhcCCceEEEEecCceEecHHHHHHHHhhcCCC-CCe-EEEE-eecCcccccCCCccccCCcc-ccC-----CC
Q 015683 220 IFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSK-PRV-YIGC-MKSGPVLSQKNVKYHEPEYW-KFG-----EE 290 (402)
Q Consensus 220 ~~~~wa~~~~~a~fvlKvDDDvfVnl~~L~~~L~~~~~~-~~l-Y~G~-~~~~pv~rd~~~Kwyvp~~w-~f~-----y~ 290 (402)
..+..+.+....+|++..|+|+.+..+.|.+.+...... +.+ ++|. +...........+.+..+.+ .|. ..
T Consensus 74 ~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (241)
T cd06427 74 KACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLA 153 (241)
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666678999999999999999998888776432 333 2222 21100000000011100000 000 00
Q ss_pred CCccccccCCCeeeeCHHHHHHHHHhCCCcCCCCcChHHHHHHHhcCC--Ceeec
Q 015683 291 GNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLE--VEHID 343 (402)
Q Consensus 291 ~~~Yp~Y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~~d 343 (402)
....+..++|++.++++++.+.+---.. ....||..++.-+...| +..++
T Consensus 154 ~~~~~~~~~g~~~~~rr~~~~~vgg~~~---~~~~eD~~l~~rl~~~G~r~~~~~ 205 (241)
T cd06427 154 RLGLPIPLGGTSNHFRTDVLRELGGWDP---FNVTEDADLGLRLARAGYRTGVLN 205 (241)
T ss_pred hcCCeeecCCchHHhhHHHHHHcCCCCc---ccchhhHHHHHHHHHCCceEEEec
Confidence 1123334678889999999888743222 23479999998775444 44443
No 68
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=24.01 E-value=8e+02 Score=26.06 Aligned_cols=89 Identities=10% Similarity=0.203 Sum_probs=43.1
Q ss_pred HHHHHHHh----cCCceEEEEecCceEecHHHHHHHHhhc---CCCCCeEEEEeecCcccccCCCccccCCccccCCCCC
Q 015683 220 IFFSTAVA----KWDADFYVKVDDDVHVNLGMLATTLSRH---RSKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFGEEGN 292 (402)
Q Consensus 220 ~~~~wa~~----~~~a~fvlKvDDDvfVnl~~L~~~L~~~---~~~~~lY~G~~~~~pv~rd~~~Kwyvp~~w~f~y~~~ 292 (402)
.=++||.. ..+++.++-+.||.-|-+|-+--+.... ...+.+| |+.+- .|.+...++... ++..
T Consensus 177 ~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~--ciSaw---NdnG~~~~~~~~----~~~~ 247 (434)
T PF03071_consen 177 RHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLW--CISAW---NDNGKEHFVDDS----RPSL 247 (434)
T ss_dssp HHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEE--EEES-----TT-BGGGS-TT-----TT-
T ss_pred HHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeE--EEEcc---ccCCccccccCC----Cccc
Confidence 34455544 3478899999999999887665444433 2356677 44210 011111122110 0111
Q ss_pred cc-ccccCCCeeeeCHHHHHHHHHhC
Q 015683 293 KY-FRHATGQIYAISKDLATYISINQ 317 (402)
Q Consensus 293 ~Y-p~Y~~G~gYvLS~dla~~I~~~~ 317 (402)
-| -.|..|-|++|++++=..|...-
T Consensus 248 lyRsdffpglGWml~r~~w~el~~~W 273 (434)
T PF03071_consen 248 LYRSDFFPGLGWMLTRELWDELEPKW 273 (434)
T ss_dssp EEEESS---SSEEEEHHHHHHHGGG-
T ss_pred eEecccCCchHHHhhHHHHHhhcccC
Confidence 11 12356999999999998776543
No 69
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=23.76 E-value=4.9e+02 Score=22.70 Aligned_cols=88 Identities=15% Similarity=0.024 Sum_probs=51.7
Q ss_pred HHHHHHh-cCCceEEEEecCceEecHHHHHHHHhhcCCCCCeEEEEeecCcccccCCCccccC---Ccccc----CC---
Q 015683 221 FFSTAVA-KWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEP---EYWKF----GE--- 289 (402)
Q Consensus 221 ~~~wa~~-~~~a~fvlKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~~~pv~rd~~~Kwyvp---~~w~f----~y--- 289 (402)
+++++.. ..+.+|++..|.|+.+.++.|..++........+..|.....+ +...|.-. ..+.+ ..
T Consensus 71 g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (183)
T cd06438 71 GFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNSKN----PDDSWITRLYAFAFLVFNRLRPLGR 146 (183)
T ss_pred HHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEeeeC----CccCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444431 2468999999999999988888888777555566667643211 11122100 00000 00
Q ss_pred CCCccccccCCCeeeeCHHHHHH
Q 015683 290 EGNKYFRHATGQIYAISKDLATY 312 (402)
Q Consensus 290 ~~~~Yp~Y~~G~gYvLS~dla~~ 312 (402)
..-.-+.++.|+++++++++.+.
T Consensus 147 ~~~~~~~~~~G~~~~~rr~~l~~ 169 (183)
T cd06438 147 SNLGLSCQLGGTGMCFPWAVLRQ 169 (183)
T ss_pred HHcCCCeeecCchhhhHHHHHHh
Confidence 00122345789999999999888
No 70
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=22.45 E-value=3.9e+02 Score=20.98 Aligned_cols=47 Identities=13% Similarity=0.231 Sum_probs=28.9
Q ss_pred CCEEEecccccCCCchhHHHHHHHHHHh-cCCceEEEEecCceEecHHH
Q 015683 200 KDFLRLEHIEGYHELSAKTKIFFSTAVA-KWDADFYVKVDDDVHVNLGM 247 (402)
Q Consensus 200 ~DIL~ldf~Dsy~nLt~Kt~~~~~wa~~-~~~a~fvlKvDDDvfVnl~~ 247 (402)
.++-...+...+..-... ....+.+.+ ..+++|++.+|-|=|+.++.
T Consensus 41 ~~v~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 41 PGVGIIRWVDPYRDERRQ-RAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCcEEEEeCCCccchHHH-HHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 445445555566443333 333344433 36899999999999987765
No 71
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=21.76 E-value=3.7e+02 Score=25.90 Aligned_cols=120 Identities=14% Similarity=0.120 Sum_probs=67.5
Q ss_pred CCCchhHHHHHHHHHHhc-CCceEEEEecCceEecHHHHHHHHhhcCCCCCeEEEEeecCcccccCCC---cc-------
Q 015683 211 YHELSAKTKIFFSTAVAK-WDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNV---KY------- 279 (402)
Q Consensus 211 y~nLt~Kt~~~~~wa~~~-~~a~fvlKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~~~pv~rd~~~---Kw------- 279 (402)
..|.-.|+-..-...... .+.+|++-.|.|+.+..+.|...+......+. +|-+.......+..+ ++
T Consensus 75 ~~~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~--vg~vq~~~~~~n~~~~~~~~~~~~~~~ 152 (254)
T cd04191 75 RENTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPR--AGIIQTAPKLIGAETLFARLQQFANRL 152 (254)
T ss_pred CCCCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCC--EEEEeCCceeECCCCHHHHHHHHHHHH
Confidence 334445665544444332 47799999999999999999998877643333 233321100011111 11
Q ss_pred ccC------CccccCCCCCccccccCCCeeeeCHHHHHHHHHhC-----CCc-CCCCcChHHHHHHHhcCC
Q 015683 280 HEP------EYWKFGEEGNKYFRHATGQIYAISKDLATYISINQ-----PIL-HKFANEDVSLGSWFIGLE 338 (402)
Q Consensus 280 yvp------~~w~f~y~~~~Yp~Y~~G~gYvLS~dla~~I~~~~-----~~l-~~~~~EDV~vG~~l~~L~ 338 (402)
|.| ..|. ..-.+|.|...++.++.+..+.... .-+ ...-.||..+|+.+...|
T Consensus 153 ~~~~~~~~~~~~~------~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G 217 (254)
T cd04191 153 YGPVFGRGLAAWQ------GGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAG 217 (254)
T ss_pred HHHHHHHHHHHhc------CCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcC
Confidence 000 0011 1123467999999999887754321 111 234589999999886555
No 72
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=20.52 E-value=67 Score=25.69 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=19.4
Q ss_pred chhHHHHHHHHHHHHHHHhcCC
Q 015683 13 TKWIPFVCLFCFALGILFSNLT 34 (402)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~r~ 34 (402)
.-|++++-++|..||.+++++|
T Consensus 46 ~~~ii~iD~~Sl~aGf~~a~~m 67 (74)
T PF09964_consen 46 TWWIIFIDAVSLTAGFLYAKKM 67 (74)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999886
Done!