Query 015684
Match_columns 402
No_of_seqs 327 out of 2096
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 08:36:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015684.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015684hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1432 Predicted DNA repair e 100.0 1.7E-61 3.6E-66 429.6 30.7 334 30-377 40-378 (379)
2 cd07383 MPP_Dcr2 Saccharomyces 100.0 8.6E-31 1.9E-35 230.6 22.0 196 42-325 1-199 (199)
3 PRK11148 cyclic 3',5'-adenosin 100.0 5.2E-28 1.1E-32 223.5 27.0 240 41-363 12-264 (275)
4 cd07395 MPP_CSTP1 Homo sapiens 100.0 4.3E-28 9.3E-33 222.9 25.2 244 41-340 2-252 (262)
5 cd07396 MPP_Nbla03831 Homo sap 100.0 2.9E-26 6.4E-31 210.8 24.8 234 44-339 1-260 (267)
6 cd07402 MPP_GpdQ Enterobacter 99.9 2.2E-25 4.7E-30 202.4 23.1 227 45-339 1-236 (240)
7 cd00839 MPP_PAPs purple acid p 99.9 8.2E-25 1.8E-29 204.7 22.2 263 41-374 2-293 (294)
8 PLN02533 probable purple acid 99.9 9.6E-23 2.1E-27 197.8 25.5 263 42-379 138-422 (427)
9 cd07399 MPP_YvnB Bacillus subt 99.9 1E-22 2.2E-27 180.8 18.8 160 44-303 1-162 (214)
10 cd07378 MPP_ACP5 Homo sapiens 99.9 4.4E-22 9.6E-27 184.6 20.0 220 44-321 1-233 (277)
11 cd07401 MPP_TMEM62_N Homo sapi 99.9 5.1E-22 1.1E-26 181.1 19.5 206 46-311 2-221 (256)
12 cd00842 MPP_ASMase acid sphing 99.9 3.4E-21 7.3E-26 180.2 19.6 222 46-308 1-267 (296)
13 KOG1378 Purple acid phosphatas 99.9 9.4E-20 2E-24 171.4 21.5 274 32-379 132-441 (452)
14 cd07393 MPP_DR1119 Deinococcus 99.8 1.8E-19 3.9E-24 162.0 21.2 215 46-322 1-229 (232)
15 TIGR03729 acc_ester putative p 99.8 1.3E-19 2.8E-24 164.1 17.1 233 45-316 1-235 (239)
16 TIGR03767 P_acnes_RR metalloph 99.8 1.6E-18 3.5E-23 165.2 24.7 133 169-341 290-432 (496)
17 PTZ00422 glideosome-associated 99.8 8.8E-18 1.9E-22 158.0 25.1 252 41-340 24-306 (394)
18 KOG2679 Purple (tartrate-resis 99.8 1.4E-18 2.9E-23 150.9 17.4 218 39-320 39-274 (336)
19 cd07392 MPP_PAE1087 Pyrobaculu 99.8 2.2E-18 4.8E-23 150.3 18.6 186 46-315 1-186 (188)
20 cd08163 MPP_Cdc1 Saccharomyces 99.8 1.6E-18 3.5E-23 157.2 18.0 210 48-307 2-231 (257)
21 COG1409 Icc Predicted phosphoh 99.8 2.5E-18 5.5E-23 161.0 20.0 201 44-314 1-206 (301)
22 cd07388 MPP_Tt1561 Thermus the 99.7 9.1E-16 2E-20 135.6 22.5 196 43-319 4-205 (224)
23 cd07400 MPP_YydB Bacillus subt 99.7 8.3E-17 1.8E-21 134.1 12.9 80 46-136 1-80 (144)
24 cd00840 MPP_Mre11_N Mre11 nucl 99.7 1.6E-16 3.5E-21 142.4 13.7 90 45-139 1-91 (223)
25 TIGR03768 RPA4764 metallophosp 99.7 2.5E-15 5.4E-20 142.0 22.0 132 191-342 305-452 (492)
26 PF00149 Metallophos: Calcineu 99.7 4.2E-17 9.1E-22 139.7 9.0 79 44-138 1-79 (200)
27 PRK11340 phosphodiesterase Yae 99.7 3E-15 6.5E-20 137.8 21.3 80 42-139 48-127 (271)
28 cd07404 MPP_MS158 Microscilla 99.7 1.9E-16 4.1E-21 135.3 10.8 68 242-317 96-163 (166)
29 TIGR00583 mre11 DNA repair pro 99.6 1E-13 2.2E-18 132.8 20.0 89 42-139 2-125 (405)
30 KOG3770 Acid sphingomyelinase 99.6 1.3E-13 2.9E-18 133.3 20.6 293 39-379 134-477 (577)
31 cd07385 MPP_YkuE_C Bacillus su 99.6 2.9E-14 6.3E-19 127.8 14.6 80 43-141 1-80 (223)
32 PRK10966 exonuclease subunit S 99.6 2.6E-13 5.6E-18 131.2 19.1 86 44-138 1-88 (407)
33 PHA02546 47 endonuclease subun 99.5 7.6E-13 1.7E-17 125.6 21.3 86 44-137 1-89 (340)
34 COG2129 Predicted phosphoester 99.5 3.5E-12 7.5E-17 109.6 22.9 211 42-339 2-215 (226)
35 TIGR00619 sbcd exonuclease Sbc 99.5 2.4E-13 5.2E-18 123.6 14.4 86 44-138 1-89 (253)
36 PF14582 Metallophos_3: Metall 99.5 8.1E-13 1.7E-17 113.0 14.1 74 44-137 6-102 (255)
37 cd07397 MPP_DevT Myxococcus xa 99.5 2.7E-12 5.9E-17 113.7 17.7 66 44-140 1-66 (238)
38 cd08165 MPP_MPPE1 human MPPE1 99.5 6.7E-13 1.5E-17 111.6 12.4 83 47-136 1-88 (156)
39 PF12850 Metallophos_2: Calcin 99.5 2.9E-12 6.2E-17 108.0 15.2 74 243-339 81-154 (156)
40 COG0420 SbcD DNA repair exonuc 99.4 1.8E-12 3.9E-17 125.9 15.1 87 44-139 1-90 (390)
41 PRK05340 UDP-2,3-diacylglucosa 99.4 4.7E-12 1E-16 114.7 14.7 77 44-137 1-83 (241)
42 TIGR00040 yfcE phosphoesterase 99.4 1.1E-11 2.5E-16 104.7 15.3 55 281-339 97-151 (158)
43 cd07379 MPP_239FB Homo sapiens 99.4 1.8E-11 3.8E-16 100.7 13.5 61 45-136 1-62 (135)
44 cd07394 MPP_Vps29 Homo sapiens 99.3 1.1E-10 2.5E-15 100.2 18.2 56 282-339 98-155 (178)
45 COG1408 Predicted phosphohydro 99.3 1.4E-11 3E-16 113.0 11.8 81 42-142 43-123 (284)
46 TIGR01854 lipid_A_lpxH UDP-2,3 99.3 8.1E-11 1.8E-15 105.9 14.6 74 47-137 2-81 (231)
47 cd00841 MPP_YfcE Escherichia c 99.3 1.7E-10 3.8E-15 97.1 15.2 51 285-339 97-147 (155)
48 cd07384 MPP_Cdc1_like Saccharo 99.2 7.6E-11 1.6E-15 100.6 11.5 90 47-136 1-99 (171)
49 PRK09453 phosphodiesterase; Pr 99.2 1.4E-10 3.1E-15 100.4 13.3 71 44-136 1-75 (182)
50 cd08166 MPP_Cdc1_like_1 unchar 99.2 1.1E-10 2.3E-15 100.3 11.7 86 47-136 1-92 (195)
51 cd07406 MPP_CG11883_N Drosophi 99.2 9.9E-10 2.1E-14 100.4 18.4 216 44-318 1-222 (257)
52 COG2908 Uncharacterized protei 99.2 1.6E-11 3.4E-16 106.8 5.0 72 47-136 1-79 (237)
53 COG1768 Predicted phosphohydro 99.2 6E-10 1.3E-14 91.5 13.4 85 44-139 1-88 (230)
54 cd00838 MPP_superfamily metall 99.2 3E-10 6.5E-15 92.0 11.5 69 47-135 1-69 (131)
55 cd07403 MPP_TTHA0053 Thermus t 99.2 5.6E-10 1.2E-14 90.8 12.3 37 88-135 20-56 (129)
56 cd07410 MPP_CpdB_N Escherichia 99.2 5.5E-09 1.2E-13 96.8 20.1 231 44-317 1-245 (277)
57 cd07398 MPP_YbbF-LpxH Escheric 99.1 6.4E-10 1.4E-14 99.2 12.4 77 47-137 1-82 (217)
58 cd00845 MPP_UshA_N_like Escher 99.1 2.3E-08 5E-13 91.3 19.6 95 44-153 1-96 (252)
59 cd07411 MPP_SoxB_N Thermus the 98.9 2E-07 4.4E-12 85.6 20.3 225 44-317 1-236 (264)
60 cd07412 MPP_YhcR_N Bacillus su 98.9 3.1E-07 6.8E-12 85.4 21.4 78 217-317 176-258 (288)
61 PRK09558 ushA bifunctional UDP 98.9 6.4E-08 1.4E-12 98.2 18.0 61 217-301 193-256 (551)
62 cd07408 MPP_SA0022_N Staphyloc 98.9 1.5E-07 3.3E-12 86.1 18.2 95 44-152 1-95 (257)
63 COG0622 Predicted phosphoester 98.9 7.2E-08 1.6E-12 81.6 14.3 56 280-339 99-154 (172)
64 KOG2310 DNA repair exonuclease 98.9 5.4E-08 1.2E-12 93.0 14.4 92 41-142 11-138 (646)
65 cd07391 MPP_PF1019 Pyrococcus 98.8 5.5E-09 1.2E-13 89.5 6.5 85 47-136 1-87 (172)
66 PRK09418 bifunctional 2',3'-cy 98.8 9.4E-07 2E-11 91.7 23.3 75 218-318 230-304 (780)
67 cd07409 MPP_CD73_N CD73 ecto-5 98.8 2.2E-06 4.8E-11 79.4 22.6 210 44-302 1-218 (281)
68 PRK09419 bifunctional 2',3'-cy 98.8 7.6E-07 1.7E-11 97.8 21.4 225 42-302 40-280 (1163)
69 PF09423 PhoD: PhoD-like phosp 98.7 4.3E-07 9.3E-12 90.1 16.5 216 42-302 104-377 (453)
70 PRK09419 bifunctional 2',3'-cy 98.7 1.7E-06 3.7E-11 95.1 21.3 218 42-317 659-896 (1163)
71 KOG3662 Cell division control 98.7 4E-07 8.6E-12 86.0 13.8 95 41-139 46-146 (410)
72 TIGR00024 SbcD_rel_arch putati 98.7 4.9E-08 1.1E-12 86.9 6.8 85 45-136 16-101 (225)
73 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.7 3.4E-06 7.5E-11 76.7 18.7 64 242-307 164-232 (262)
74 COG0737 UshA 5'-nucleotidase/2 98.6 1.8E-06 3.8E-11 87.2 17.1 232 40-317 23-266 (517)
75 COG4186 Predicted phosphoester 98.6 1.5E-06 3.3E-11 70.1 12.3 80 45-137 5-86 (186)
76 PRK04036 DNA polymerase II sma 98.5 3.5E-07 7.5E-12 91.3 9.8 83 40-138 240-344 (504)
77 cd07407 MPP_YHR202W_N Saccharo 98.5 6.9E-06 1.5E-10 75.8 17.3 90 42-139 4-99 (282)
78 cd07386 MPP_DNA_pol_II_small_a 98.5 2.8E-07 6.1E-12 83.6 7.5 76 47-138 2-95 (243)
79 cd07405 MPP_UshA_N Escherichia 98.4 3.9E-05 8.3E-10 71.3 19.9 92 44-149 1-97 (285)
80 cd07390 MPP_AQ1575 Aquifex aeo 98.4 7E-07 1.5E-11 76.2 6.9 77 47-136 2-81 (168)
81 TIGR01530 nadN NAD pyrophospha 98.4 3.1E-05 6.6E-10 78.5 18.6 210 44-301 1-217 (550)
82 cd08162 MPP_PhoA_N Synechococc 98.3 0.0002 4.4E-09 67.2 22.4 17 285-301 226-243 (313)
83 PRK09420 cpdB bifunctional 2', 98.3 0.00016 3.4E-09 74.6 22.4 224 42-302 24-263 (649)
84 COG1407 Predicted ICC-like pho 98.3 1.6E-06 3.6E-11 76.1 6.8 88 44-137 20-110 (235)
85 PRK11907 bifunctional 2',3'-cy 98.3 0.0001 2.3E-09 77.0 20.2 223 43-301 115-353 (814)
86 PHA02239 putative protein phos 98.2 4.8E-06 1E-10 74.7 8.5 70 44-136 1-72 (235)
87 cd07382 MPP_DR1281 Deinococcus 98.2 0.00028 6E-09 64.0 18.8 63 80-152 19-81 (255)
88 TIGR01390 CycNucDiestase 2',3' 98.2 0.00021 4.6E-09 73.4 20.1 102 43-152 2-112 (626)
89 PRK00166 apaH diadenosine tetr 98.1 8.1E-06 1.7E-10 74.9 7.5 67 44-136 1-68 (275)
90 COG3540 PhoD Phosphodiesterase 98.1 8.2E-05 1.8E-09 71.0 13.2 213 84-326 162-451 (522)
91 cd08164 MPP_Ted1 Saccharomyces 98.0 2.7E-05 5.9E-10 67.0 8.0 56 80-136 34-110 (193)
92 cd07425 MPP_Shelphs Shewanella 98.0 2.6E-05 5.6E-10 68.9 7.6 46 89-136 31-79 (208)
93 cd07424 MPP_PrpA_PrpB PrpA and 97.9 3.3E-05 7.1E-10 68.3 7.1 64 45-136 2-66 (207)
94 TIGR00282 metallophosphoestera 97.8 0.0037 8E-08 56.9 19.4 71 44-139 1-73 (266)
95 cd07423 MPP_PrpE Bacillus subt 97.8 8.7E-05 1.9E-09 66.9 7.6 42 91-136 38-79 (234)
96 PRK11439 pphA serine/threonine 97.7 8E-05 1.7E-09 66.3 6.7 68 41-136 14-82 (218)
97 PRK09968 serine/threonine-spec 97.7 0.00013 2.8E-09 64.9 7.6 70 39-136 10-80 (218)
98 cd07422 MPP_ApaH Escherichia c 97.7 0.0001 2.2E-09 66.9 7.0 64 47-136 2-66 (257)
99 TIGR00668 apaH bis(5'-nucleosy 97.6 0.00017 3.6E-09 65.8 7.0 67 44-136 1-68 (279)
100 PRK13625 bis(5'-nucleosyl)-tet 97.5 0.00024 5.1E-09 64.5 7.2 42 91-136 37-78 (245)
101 cd00144 MPP_PPP_family phospho 97.5 0.00021 4.6E-09 63.9 6.6 54 80-136 14-67 (225)
102 cd07387 MPP_PolD2_C PolD2 (DNA 97.5 0.00039 8.5E-09 62.9 7.7 78 45-138 1-108 (257)
103 cd07413 MPP_PA3087 Pseudomonas 97.5 0.00036 7.8E-09 62.2 7.2 43 90-136 33-75 (222)
104 cd07421 MPP_Rhilphs Rhilph pho 97.4 0.00072 1.6E-08 61.8 8.4 69 45-136 3-79 (304)
105 KOG4419 5' nucleotidase [Nucle 97.4 0.0022 4.8E-08 63.2 12.0 98 35-139 34-136 (602)
106 COG1311 HYS2 Archaeal DNA poly 97.2 0.00095 2.1E-08 64.3 6.8 81 42-138 224-322 (481)
107 COG5555 Cytolysin, a secreted 97.0 0.0064 1.4E-07 54.4 9.9 75 217-302 254-334 (392)
108 cd07381 MPP_CapA CapA and rela 97.0 0.044 9.5E-07 49.5 15.5 72 218-316 161-233 (239)
109 smart00854 PGA_cap Bacterial c 96.9 0.044 9.5E-07 49.5 14.7 36 280-316 196-231 (239)
110 cd07418 MPP_PP7 PP7, metalloph 96.8 0.0031 6.8E-08 60.1 6.6 24 276-299 270-293 (377)
111 KOG3947 Phosphoesterases [Gene 96.7 0.025 5.4E-07 50.6 11.2 68 42-138 60-127 (305)
112 cd07389 MPP_PhoD Bacillus subt 96.6 0.059 1.3E-06 48.2 13.1 54 87-141 26-106 (228)
113 smart00156 PP2Ac Protein phosp 96.5 0.011 2.3E-07 54.4 7.9 72 44-137 28-99 (271)
114 PF04042 DNA_pol_E_B: DNA poly 96.5 0.0029 6.2E-08 55.9 4.0 76 46-139 1-93 (209)
115 KOG2863 RNA lariat debranching 96.4 0.051 1.1E-06 50.5 11.4 30 276-306 204-233 (456)
116 cd07416 MPP_PP2B PP2B, metallo 96.3 0.016 3.6E-07 54.1 8.0 25 277-301 220-244 (305)
117 PF13277 YmdB: YmdB-like prote 96.2 0.32 7E-06 43.5 14.9 164 80-307 17-181 (253)
118 cd07420 MPP_RdgC Drosophila me 96.1 0.026 5.6E-07 53.0 8.1 25 277-301 251-275 (321)
119 cd07415 MPP_PP2A_PP4_PP6 PP2A, 95.9 0.027 5.8E-07 52.1 7.3 58 277-339 212-271 (285)
120 cd07414 MPP_PP1_PPKL PP1, PPKL 95.8 0.027 5.9E-07 52.3 7.0 25 277-301 220-244 (293)
121 PTZ00480 serine/threonine-prot 95.6 0.032 6.9E-07 52.3 6.7 25 277-301 229-253 (320)
122 PTZ00235 DNA polymerase epsilo 95.5 0.1 2.2E-06 47.8 9.0 81 39-138 23-123 (291)
123 PTZ00239 serine/threonine prot 95.4 0.059 1.3E-06 50.3 7.5 25 277-301 213-237 (303)
124 PTZ00244 serine/threonine-prot 95.4 0.04 8.7E-07 51.2 6.3 25 277-301 222-246 (294)
125 COG1692 Calcineurin-like phosp 95.3 1.2 2.5E-05 39.7 14.6 106 44-179 1-107 (266)
126 cd07417 MPP_PP5_C PP5, C-termi 95.1 0.091 2E-06 49.3 7.8 58 277-339 231-290 (316)
127 cd07419 MPP_Bsu1_C Arabidopsis 94.7 0.13 2.8E-06 48.3 7.8 58 277-339 240-299 (311)
128 PF09587 PGA_cap: Bacterial ca 94.6 1.7 3.6E-05 39.5 14.8 74 216-316 168-242 (250)
129 KOG3325 Membrane coat complex 94.6 0.17 3.6E-06 41.0 7.0 71 280-364 97-172 (183)
130 cd07380 MPP_CWF19_N Schizosacc 94.6 0.087 1.9E-06 43.7 5.6 44 89-135 25-68 (150)
131 COG2949 SanA Uncharacterized m 84.9 1.8 3.9E-05 37.4 4.8 42 80-126 83-124 (235)
132 PF02350 Epimerase_2: UDP-N-ac 80.8 3.2 7E-05 39.6 5.5 60 78-147 55-117 (346)
133 KOG3818 DNA polymerase epsilon 80.2 12 0.00027 36.2 8.9 79 41-139 280-371 (525)
134 COG2875 CobM Precorrin-4 methy 79.6 6.4 0.00014 34.8 6.3 47 80-133 66-112 (254)
135 cd08164 MPP_Ted1 Saccharomyces 77.7 4 8.7E-05 35.3 4.6 13 290-302 144-156 (193)
136 COG0381 WecB UDP-N-acetylgluco 76.4 5.9 0.00013 37.9 5.6 50 77-136 79-129 (383)
137 PF06874 FBPase_2: Firmicute f 75.5 3.2 6.9E-05 42.1 3.7 53 78-137 172-224 (640)
138 cd07380 MPP_CWF19_N Schizosacc 72.2 6.3 0.00014 32.7 4.2 52 244-301 70-121 (150)
139 PF07172 GRP: Glycine rich pro 71.7 1.5 3.3E-05 33.1 0.4 17 10-26 6-22 (95)
140 PRK09968 serine/threonine-spec 68.3 5.3 0.00011 35.4 3.2 31 290-322 179-209 (218)
141 TIGR03568 NeuC_NnaA UDP-N-acet 67.1 15 0.00033 35.3 6.4 49 78-136 81-130 (365)
142 PF08139 LPAM_1: Prokaryotic m 64.9 3.2 7E-05 22.8 0.7 15 13-27 10-24 (25)
143 KOG0374 Serine/threonine speci 64.4 9.7 0.00021 36.0 4.3 27 277-303 231-257 (331)
144 COG3855 Fbp Uncharacterized pr 63.2 8.9 0.00019 37.3 3.7 51 80-137 180-230 (648)
145 cd04502 SGNH_hydrolase_like_7 59.7 51 0.0011 27.4 7.7 52 79-130 39-95 (171)
146 PRK09967 putative outer membra 59.2 41 0.0009 28.1 6.8 56 41-107 43-98 (160)
147 cd07425 MPP_Shelphs Shewanella 58.9 12 0.00027 32.8 3.8 24 281-304 158-181 (208)
148 PRK11627 hypothetical protein; 58.4 7.9 0.00017 33.5 2.4 30 1-41 1-30 (192)
149 COG2047 Uncharacterized protei 55.2 29 0.00062 30.6 5.1 45 89-134 82-126 (258)
150 cd07424 MPP_PrpA_PrpB PrpA and 54.5 13 0.00029 32.4 3.2 28 290-318 168-195 (207)
151 KOG2476 Uncharacterized conser 51.7 38 0.00083 33.2 5.9 69 44-134 6-75 (528)
152 PRK10903 peptidyl-prolyl cis-t 51.1 58 0.0013 28.1 6.6 11 90-100 74-84 (190)
153 TIGR01319 glmL_fam conserved h 48.8 35 0.00077 33.7 5.3 49 85-137 115-163 (463)
154 TIGR03413 GSH_gloB hydroxyacyl 48.2 29 0.00063 31.3 4.5 44 92-136 119-166 (248)
155 PF14639 YqgF: Holliday-juncti 47.8 44 0.00095 27.7 5.1 58 76-136 49-108 (150)
156 PRK13254 cytochrome c-type bio 47.1 10 0.00022 31.3 1.2 16 1-16 1-16 (148)
157 cd01828 sialate_O-acetylestera 46.4 85 0.0018 25.9 6.9 50 80-130 39-93 (169)
158 COG2248 Predicted hydrolase (m 45.2 34 0.00073 30.9 4.1 41 39-101 172-212 (304)
159 COG1646 Predicted phosphate-bi 42.8 80 0.0017 28.2 6.0 51 80-136 31-82 (240)
160 PRK13600 putative ribosomal pr 42.2 1.2E+02 0.0027 22.3 6.1 43 81-131 20-62 (84)
161 TIGR01769 GGGP geranylgeranylg 42.0 93 0.002 27.3 6.5 49 82-136 16-65 (205)
162 PF00582 Usp: Universal stress 41.1 88 0.0019 24.1 6.0 51 78-131 90-140 (140)
163 PRK11439 pphA serine/threonine 39.9 34 0.00074 30.2 3.6 52 91-150 16-69 (218)
164 COG2086 FixA Electron transfer 36.9 1.4E+02 0.0031 27.2 7.0 26 77-103 98-123 (260)
165 PRK10116 universal stress prot 36.7 1.4E+02 0.003 23.7 6.5 9 123-131 130-138 (142)
166 PF03100 CcmE: CcmE; InterPro 35.5 12 0.00027 30.1 0.0 17 2-18 1-17 (131)
167 cd07386 MPP_DNA_pol_II_small_a 35.2 28 0.00062 31.2 2.3 28 290-318 191-218 (243)
168 PF13941 MutL: MutL protein 35.1 84 0.0018 31.2 5.6 49 85-137 119-167 (457)
169 PRK10241 hydroxyacylglutathion 34.9 56 0.0012 29.5 4.2 43 94-137 122-168 (251)
170 cd07423 MPP_PrpE Bacillus subt 34.7 47 0.001 29.6 3.7 32 290-323 181-212 (234)
171 TIGR00236 wecB UDP-N-acetylglu 34.6 1E+02 0.0022 29.4 6.2 44 78-131 74-117 (365)
172 cd04501 SGNH_hydrolase_like_4 34.5 1.8E+02 0.0038 24.3 7.1 11 44-54 1-11 (183)
173 COG5510 Predicted small secret 34.4 18 0.00039 22.7 0.6 22 1-26 1-22 (44)
174 TIGR01768 GGGP-family geranylg 34.4 1.2E+02 0.0027 26.9 6.1 48 82-136 19-67 (223)
175 cd02067 B12-binding B12 bindin 34.3 1.7E+02 0.0036 22.7 6.4 53 80-136 40-92 (119)
176 PF03437 BtpA: BtpA family; I 33.7 1.7E+02 0.0038 26.5 7.0 78 36-132 131-208 (254)
177 TIGR02855 spore_yabG sporulati 33.6 38 0.00083 30.8 2.7 25 75-99 138-162 (283)
178 KOG4184 Predicted sugar kinase 33.4 87 0.0019 29.7 5.0 53 75-127 223-278 (478)
179 KOG0372 Serine/threonine speci 33.3 60 0.0013 29.2 3.8 44 92-137 71-114 (303)
180 COG0434 SgcQ Predicted TIM-bar 33.2 2E+02 0.0044 25.8 7.0 70 44-132 144-213 (263)
181 COG1358 RPL8A Ribosomal protei 33.2 1.8E+02 0.0039 22.9 6.1 49 80-135 33-81 (116)
182 PF02421 FeoB_N: Ferrous iron 32.9 1.2E+02 0.0026 25.3 5.4 49 80-135 68-116 (156)
183 KOG3325 Membrane coat complex 32.6 1.5E+02 0.0033 24.4 5.7 65 45-137 2-66 (183)
184 PF05582 Peptidase_U57: YabG p 32.2 46 0.00099 30.5 3.0 26 74-99 138-163 (287)
185 PF13258 DUF4049: Domain of un 31.6 70 0.0015 28.4 3.9 16 124-139 127-142 (318)
186 PRK10834 vancomycin high tempe 31.2 1.9E+02 0.0041 26.0 6.7 36 86-126 77-112 (239)
187 PF09680 Tiny_TM_bacill: Prote 30.7 45 0.00098 18.0 1.6 16 11-26 6-21 (24)
188 cd01836 FeeA_FeeB_like SGNH_hy 30.3 1.7E+02 0.0036 24.7 6.3 12 43-54 2-13 (191)
189 COG4704 Uncharacterized protei 30.1 56 0.0012 26.2 2.8 49 7-55 3-57 (151)
190 cd01822 Lysophospholipase_L1_l 29.8 2.5E+02 0.0054 23.0 7.2 9 45-53 2-10 (177)
191 TIGR01012 Sa_S2_E_A ribosomal 29.7 91 0.002 27.1 4.3 38 89-137 107-158 (196)
192 PF05643 DUF799: Putative bact 29.1 62 0.0013 28.5 3.2 43 13-55 4-47 (215)
193 KOG0373 Serine/threonine speci 28.2 85 0.0018 27.7 3.8 46 90-137 71-117 (306)
194 PF00072 Response_reg: Respons 28.0 2.1E+02 0.0046 21.1 6.0 51 80-136 33-83 (112)
195 cd00758 MoCF_BD MoCF_BD: molyb 27.6 1.2E+02 0.0025 24.3 4.5 10 90-99 58-67 (133)
196 cd03786 GT1_UDP-GlcNAc_2-Epime 27.2 1.8E+02 0.0039 27.4 6.5 45 79-133 77-121 (363)
197 PTZ00365 60S ribosomal protein 26.8 2.2E+02 0.0047 25.9 6.2 49 81-136 139-187 (266)
198 PRK15408 autoinducer 2-binding 26.2 4.8E+02 0.01 24.6 9.1 34 88-130 78-111 (336)
199 TIGR00259 thylakoid_BtpA membr 26.1 3E+02 0.0065 25.1 7.2 71 45-133 139-209 (257)
200 PRK04169 geranylgeranylglycery 25.9 1.6E+02 0.0035 26.4 5.4 46 84-136 26-72 (232)
201 PTZ00222 60S ribosomal protein 25.9 2.4E+02 0.0051 25.6 6.3 50 80-136 138-187 (263)
202 KOG0371 Serine/threonine prote 24.2 79 0.0017 28.7 3.0 46 89-136 84-130 (319)
203 PRK15473 cbiF cobalt-precorrin 23.8 2E+02 0.0042 26.1 5.7 46 80-132 71-116 (257)
204 PRK04036 DNA polymerase II sma 23.7 58 0.0013 32.9 2.4 27 291-318 441-467 (504)
205 PRK13150 cytochrome c-type bio 23.4 36 0.00078 28.4 0.7 16 1-16 1-16 (159)
206 PF13727 CoA_binding_3: CoA-bi 23.4 1.2E+02 0.0026 24.9 4.1 46 79-131 130-175 (175)
207 PF12393 Dr_adhesin: Dr family 23.2 78 0.0017 16.5 1.6 14 13-26 4-17 (21)
208 KOG3724 Negative regulator of 23.0 4E+02 0.0086 28.6 8.0 57 191-251 133-190 (973)
209 PF07981 Plasmod_MYXSPDY: Plas 22.7 69 0.0015 15.6 1.3 15 38-52 3-17 (17)
210 PF01248 Ribosomal_L7Ae: Ribos 22.4 2.6E+02 0.0056 20.6 5.3 45 80-131 21-65 (95)
211 PRK13165 cytochrome c-type bio 21.9 48 0.001 27.7 1.2 16 1-16 1-16 (160)
212 COG2039 Pcp Pyrrolidone-carbox 21.9 1E+02 0.0022 26.6 3.1 30 74-104 44-73 (207)
213 PRK13159 cytochrome c-type bio 21.9 40 0.00086 28.0 0.7 16 1-16 1-16 (155)
214 PF15284 PAGK: Phage-encoded v 21.4 29 0.00063 23.6 -0.1 7 2-8 1-7 (61)
215 PF11119 DUF2633: Protein of u 21.3 73 0.0016 21.6 1.7 17 2-18 1-17 (59)
216 cd02812 PcrB_like PcrB_like pr 21.1 2.9E+02 0.0064 24.4 6.0 52 80-137 15-67 (219)
217 COG0505 CarA Carbamoylphosphat 20.8 1.8E+02 0.0038 27.8 4.7 39 88-133 218-260 (368)
218 PF08497 Radical_SAM_N: Radica 20.7 1.8E+02 0.0038 27.0 4.6 15 89-103 15-29 (302)
219 cd01833 XynB_like SGNH_hydrola 20.7 2.9E+02 0.0062 22.2 5.8 51 80-130 30-85 (157)
220 TIGR02803 ExbD_1 TonB system t 20.2 4.3E+02 0.0093 20.6 9.9 35 93-133 87-121 (122)
221 cd02071 MM_CoA_mut_B12_BD meth 20.1 4.3E+02 0.0093 20.6 6.7 48 80-133 40-89 (122)
222 cd07018 S49_SppA_67K_type Sign 20.0 3.1E+02 0.0067 24.1 6.1 51 80-132 36-86 (222)
223 PHA03008 hypothetical protein; 20.0 1.4E+02 0.003 25.8 3.5 42 244-301 162-203 (234)
224 PRK03011 butyrate kinase; Prov 20.0 3.2E+02 0.007 26.2 6.6 40 90-136 295-334 (358)
225 PF01884 PcrB: PcrB family; I 20.0 3.9E+02 0.0084 23.9 6.6 48 82-136 24-71 (230)
No 1
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=100.00 E-value=1.7e-61 Score=429.61 Aligned_cols=334 Identities=59% Similarity=1.014 Sum_probs=297.6
Q ss_pred cCCCcceeecCCCceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhH
Q 015684 30 AKQERKLRFRQNGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDA 109 (402)
Q Consensus 30 ~~~~~~l~~~~~~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~ 109 (402)
.....+++++.+|+|||+|+||+|++.+...+|+++.|.+..+|.|.+|..+|.++|+.|+|||||+|||+|++....+.
T Consensus 40 ~~~~~~lr~~~~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t~Da 119 (379)
T KOG1432|consen 40 DNGRLKLRFREDGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHSTQDA 119 (379)
T ss_pred cCcceeeeecCCCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCcccccccHhH
Confidence 34455799999999999999999999998889999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHhHhHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHhcCCcccccCCCCCcc--ccccccceEEeccCCCCCCCC
Q 015684 110 AKSLNAAFAPAIASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHI--IDGFGNYNLEIGGVKGSGFEN 187 (402)
Q Consensus 110 ~~~~~~~l~~~~~~~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~g~~~y~~~~~~~~~~~~~~ 187 (402)
...+.++++|+++.+|||++++||||..+.+++.+++++...+|+++.+++|.+... +.|++||.+.+.+.-++....
T Consensus 120 ~~sl~kAvaP~I~~~IPwA~~lGNHDdes~ltr~ql~~~i~~lP~s~~~v~p~dg~~~~~~g~gnyn~~i~~~~ds~~~~ 199 (379)
T KOG1432|consen 120 ATSLMKAVAPAIDRKIPWAAVLGNHDDESDLTRLQLMKFISKLPYSLSQVNPPDGHMYIIDGFGNYNLQIEGAIDSELEN 199 (379)
T ss_pred HHHHHHHhhhHhhcCCCeEEEecccccccccCHHHHHHHHhcCCCccccCCCcccceeeeecccceEEEeccCCCccccc
Confidence 899999999999999999999999999999999999999999999999998876543 567899999998877777667
Q ss_pred ceeEEEEEEeCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccC-CCcc
Q 015684 188 KSVLNLYFLDSGDYSTVP-SVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQ-SNFT 265 (402)
Q Consensus 188 ~~~~~l~~lDs~~~~~~~-~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~-~~~~ 265 (402)
.++..+++||++.|+..+ ..++|+|+..+|++||+.+..+.+.. . ......|-+++.|+|++++...+. ....
T Consensus 200 ~sv~~lyfld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~-~----~~~~P~p~La~~HIP~~E~~~~~~~tp~~ 274 (379)
T KOG1432|consen 200 KSVFNLYFLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEP-N----SKYNPQPGLAFFHIPLPEFLELESKTPLI 274 (379)
T ss_pred CceeeEEEEecCCcccccccccCccchhhhhHHHHhhhhhhhhcc-c----CccCCCCceEEEEcccHHHhhccCCCccc
Confidence 778899999999998886 56789999999999999987542210 0 001223899999999999988876 3467
Q ss_pred cccCCcCCCCCCChHHHHHHHHcCCeeEEEeccCCCCcccccCCC-eeEEecCCccCCCCCCCCCCcceEEEEEeecccc
Q 015684 266 GVRQEGISSASVNSGFFTTMVAAGDVKAVFTGHDHVNDFCGRLTG-IQLCYGGGFGYHAYGKAGWERRARVVVASLEKTE 344 (402)
Q Consensus 266 G~~~~~~~~~~~~~~~l~~l~~~~~v~~v~~GH~H~~~~~~~~~g-i~~~~~~~~g~~~y~~~~~~~g~rv~ei~~~~~~ 344 (402)
|..+|+..++..++.++..|.++.+|++|+|||+|.||+|.+.+| +|+||+|+.||++||..+|.|++||+|++..+
T Consensus 275 g~~~E~~~~~~~~sg~~~~L~~r~~Vk~vf~GHdHvNDfC~~~k~~~wlCygGgaGyggYg~~gw~Rr~Rv~e~d~~~-- 352 (379)
T KOG1432|consen 275 GVFQEGVSASKHNSGFLTTLVNRGNVKGVFCGHDHVNDFCGELKGELWLCYGGGAGYGGYGIGGWERRARVFELDLNK-- 352 (379)
T ss_pred ceeeccccccccccHHHHHHHhccCcceEEeccccccceecccCCeEEEEecCCCccCCcCcCCcccceEEEEccccc--
Confidence 889999999999999999999999999999999999999999999 99999999999999988899999999999653
Q ss_pred ccCCCcccceEEEEEcCCCCCCcccceeeeecC
Q 015684 345 KRGWGDVKSIKTWKRLDDEHLTGVDGHVLWSKT 377 (402)
Q Consensus 345 ~~~~~~~~~~~tw~r~~~~~~~~~d~~~~~~~~ 377 (402)
..|+||||++++...++|+|.+|...
T Consensus 353 -------~~IkTWKRl~d~~~~~~D~q~l~d~~ 378 (379)
T KOG1432|consen 353 -------DRIKTWKRLDDKPLSVIDYQLLYDGN 378 (379)
T ss_pred -------cccceeeecCCCCcceeeeEEEeccC
Confidence 67999999999999999999999753
No 2
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.98 E-value=8.6e-31 Score=230.61 Aligned_cols=196 Identities=51% Similarity=0.948 Sum_probs=156.3
Q ss_pred CceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhh-HHHHHHHHHhHh
Q 015684 42 GEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATD-AAKSLNAAFAPA 120 (402)
Q Consensus 42 ~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~-~~~~~~~~l~~~ 120 (402)
++|||+|+||+|++...... .....+.++.+.+.++++..+||+||++||++.+..... .++.+.+.++.+
T Consensus 1 ~~~ki~~isDlH~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l 72 (199)
T cd07383 1 GKFKILQFADLHFGEGEGTC--------EGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPM 72 (199)
T ss_pred CceEEEEEeeecccCCCCCC--------CcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHH
Confidence 47999999999998765321 001134567788888888899999999999666554332 577788888877
Q ss_pred HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHhcCCcccccCCCCCccccccccceEEeccCCCCCCCCceeEEEEEEeCCC
Q 015684 121 IASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDSGD 200 (402)
Q Consensus 121 ~~~~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lDs~~ 200 (402)
...++|+++++||||.
T Consensus 73 ~~~~~p~~~~~GNHD~---------------------------------------------------------------- 88 (199)
T cd07383 73 IDRKIPWAATFGNHDG---------------------------------------------------------------- 88 (199)
T ss_pred HHcCCCEEEECccCCC----------------------------------------------------------------
Confidence 7779999999999990
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccC--CCcccccCCcCCCCCCC
Q 015684 201 YSTVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQ--SNFTGVRQEGISSASVN 278 (402)
Q Consensus 201 ~~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~--~~~~G~~~~~~~~~~~~ 278 (402)
+|++.++|++||++.++++... .....+.++|+|||+++..+.|. ....|...+...+...+
T Consensus 89 ---------~g~l~~~ql~wL~~~l~~~~~~-------~~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~~~~~~~~ 152 (199)
T cd07383 89 ---------YDWIRPSQIEWFKETSAALKKK-------YGKPIPSLAFFHIPLPEYREVWEGKGKVPGINNEKVCCPKIN 152 (199)
T ss_pred ---------CCCCCHHHHHHHHHHHHHHhhc-------cCCCCcceEEEecChHHHHhhhcccCCCCccCCcccCCCcCC
Confidence 3567888999999999887531 02457999999999988777775 45567776655556677
Q ss_pred hHHHHHHHHcCCeeEEEeccCCCCcccccCCCeeEEecCCccCCCCC
Q 015684 279 SGFFTTMVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYHAYG 325 (402)
Q Consensus 279 ~~~l~~l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~~y~ 325 (402)
+++++.+.+..+|+++||||+|.++++...+++++|+++.+|+++||
T Consensus 153 ~~~~~~~~~~~~v~~v~~GH~H~~~~~~~~~~i~l~~g~~~g~~~y~ 199 (199)
T cd07383 153 SGLFKALLERGDVKGVFCGHDHGNDFCGRYNGIWLCYGRGTGYGGYG 199 (199)
T ss_pred cHHHHHHHHcCCeEEEEeCCCCCcceecccCCEEEeCCCCCCCCCCC
Confidence 79999999999999999999999999999999999999999999986
No 3
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.97 E-value=5.2e-28 Score=223.46 Aligned_cols=240 Identities=24% Similarity=0.249 Sum_probs=152.1
Q ss_pred CCceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHH---HHHh--cCCCEEEEcCCccCCCChhhHHHHHHH
Q 015684 41 NGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINR---MISA--EKPDLIVFTGDNIFGFDATDAAKSLNA 115 (402)
Q Consensus 41 ~~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~i~~--~~pD~vv~~GDli~~~~~~~~~~~~~~ 115 (402)
+++|||+||||+|+........ .+.++.+.+.+ .+++ .+||+||++|| +++.+..+.++.+.+
T Consensus 12 ~~~~~i~~iSD~Hl~~~~~~~~-----------~~~~~~~~l~~~i~~i~~~~~~~D~vvitGD-l~~~~~~~~~~~~~~ 79 (275)
T PRK11148 12 EARVRILQITDTHLFADEHETL-----------LGVNTWESYQAVLEAIRAQQHEFDLIVATGD-LAQDHSSEAYQHFAE 79 (275)
T ss_pred CCCEEEEEEcCcccCCCCCCce-----------eccCHHHHHHHHHHHHHhhCCCCCEEEECCC-CCCCCCHHHHHHHHH
Confidence 4679999999999854321110 01223333333 3333 37999999999 555555666766666
Q ss_pred HHhHhHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHhcCCcccccCCCCCccccccccceEEeccCCCCCCCCceeEEEEE
Q 015684 116 AFAPAIASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYF 195 (402)
Q Consensus 116 ~l~~~~~~~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~ 195 (402)
.++. .++|++++|||||.... +.+.+... ... ..+.+...+ .+++++
T Consensus 80 ~l~~---l~~Pv~~v~GNHD~~~~-----~~~~~~~~-----~~~----------~~~~~~~~~----------~~~~i~ 126 (275)
T PRK11148 80 GIAP---LRKPCVWLPGNHDFQPA-----MYSALQDA-----GIS----------PAKHVLIGE----------HWQILL 126 (275)
T ss_pred HHhh---cCCcEEEeCCCCCChHH-----HHHHHhhc-----CCC----------ccceEEecC----------CEEEEE
Confidence 6654 57999999999998421 22222110 000 011111111 178999
Q ss_pred EeCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEec-ChhhhhcccCCCcccccCCcCCC
Q 015684 196 LDSGDYSTVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHI-PLPEFAYFDQSNFTGVRQEGISS 274 (402)
Q Consensus 196 lDs~~~~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~-P~~~~~~~~~~~~~G~~~~~~~~ 274 (402)
|||.. .+. ..|+++++|++||+++|++. ++++.+||+|| |++. ...+. .. .
T Consensus 127 Lds~~----~g~-~~G~l~~~ql~wL~~~L~~~------------~~~~~vv~~hH~P~~~-~~~~~------d~----~ 178 (275)
T PRK11148 127 LDSQV----FGV-PHGELSEYQLEWLERKLADA------------PERHTLVLLHHHPLPA-GCAWL------DQ----H 178 (275)
T ss_pred ecCCC----CCC-cCCEeCHHHHHHHHHHHhhC------------CCCCeEEEEcCCCCCC-Ccchh------hc----c
Confidence 99953 222 36889999999999998743 44567787877 5443 22221 11 1
Q ss_pred CCCChHHHHHHHHcC-CeeEEEeccCCCCcccccCCCeeEEecCCccCCC------CCCCCCCcceEEEEEeeccccccC
Q 015684 275 ASVNSGFFTTMVAAG-DVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYHA------YGKAGWERRARVVVASLEKTEKRG 347 (402)
Q Consensus 275 ~~~~~~~l~~l~~~~-~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~~------y~~~~~~~g~rv~ei~~~~~~~~~ 347 (402)
...|.+.+.++++++ +|+++||||+|. .++...+|+.++.+++++++- +......+|+|+++++.+ |
T Consensus 179 ~l~n~~~l~~ll~~~~~v~~vl~GH~H~-~~~~~~~gi~~~~~ps~~~q~~~~~~~~~~~~~~~g~~~~~l~~~----g- 252 (275)
T PRK11148 179 SLRNAHELAEVLAKFPNVKAILCGHIHQ-ELDLDWNGRRLLATPSTCVQFKPHCTNFTLDTVAPGWRELELHAD----G- 252 (275)
T ss_pred CCCCHHHHHHHHhcCCCceEEEecccCh-HHhceECCEEEEEcCCCcCCcCCCCCccccccCCCcEEEEEEcCC----C-
Confidence 124666777777775 899999999999 677788999999999988641 112235689999999632 1
Q ss_pred CCcccceEEEEEcCCC
Q 015684 348 WGDVKSIKTWKRLDDE 363 (402)
Q Consensus 348 ~~~~~~~~tw~r~~~~ 363 (402)
.-.++++|++++
T Consensus 253 ----~~~~~~~~~~~~ 264 (275)
T PRK11148 253 ----SLETEVHRLADT 264 (275)
T ss_pred ----cEEEEEEEcCCC
Confidence 335566788764
No 4
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.96 E-value=4.3e-28 Score=222.87 Aligned_cols=244 Identities=21% Similarity=0.266 Sum_probs=156.2
Q ss_pred CCceEEEEEeccCCcCCCCCCCCCCCcccccCC-CChhHHHHHHHHHHhc--CCCEEEEcCCccCCCChh----hHHHHH
Q 015684 41 NGEFKILQVADMHFANGKTTPCLDVLPSQVAGC-SDLNTTAFINRMISAE--KPDLIVFTGDNIFGFDAT----DAAKSL 113 (402)
Q Consensus 41 ~~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~i~~~--~pD~vv~~GDli~~~~~~----~~~~~~ 113 (402)
+++++|+++||+|++....... .....+ ...+.++.+.+.+++. +||+||++||++.+.... ..++.+
T Consensus 2 ~~~~~f~~~sD~h~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~ 76 (262)
T cd07395 2 SGPFYFIQGADPQLGLIKKNLE-----GGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDL 76 (262)
T ss_pred CCCEEEEEecCCccchhhcccc-----CchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHH
Confidence 5789999999999996432100 000001 1223445555666655 999999999955544322 123344
Q ss_pred HHHHhHhHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHhcCCcccccCCCCCccccccccceEEeccCCCCCCCCceeEEE
Q 015684 114 NAAFAPAIASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNL 193 (402)
Q Consensus 114 ~~~l~~~~~~~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l 193 (402)
.+.++.+ ..++|+++++||||.......+.+..+... + +..+|.+...+ +++
T Consensus 77 ~~~~~~~-~~~vp~~~i~GNHD~~~~~~~~~~~~f~~~-------~---------g~~~y~~~~~~-----------~~~ 128 (262)
T cd07395 77 KDVLSLL-DPDIPLVCVCGNHDVGNTPTEESIKDYRDV-------F---------GDDYFSFWVGG-----------VFF 128 (262)
T ss_pred HHHHhhc-cCCCcEEEeCCCCCCCCCCChhHHHHHHHH-------h---------CCcceEEEECC-----------EEE
Confidence 4444432 247999999999998654333322222211 1 12346666655 889
Q ss_pred EEEeCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccCCCcccccCCcCC
Q 015684 194 YFLDSGDYSTVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGIS 273 (402)
Q Consensus 194 ~~lDs~~~~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~G~~~~~~~ 273 (402)
++|||..+... .+.+.+..+|++||+++|++.++. ..+++|+|+|||+........ .....
T Consensus 129 i~lds~~~~~~---~~~~~~~~~ql~WL~~~L~~~~~~---------~~~~~iv~~H~P~~~~~~~~~-------~~~~~ 189 (262)
T cd07395 129 IVLNSQLFFDP---SEVPELAQAQDVWLEEQLEIAKES---------DCKHVIVFQHIPWFLEDPDEE-------DSYFN 189 (262)
T ss_pred EEeccccccCc---cccccchHHHHHHHHHHHHHHHhc---------cCCcEEEEECcCCccCCCCCC-------cccCC
Confidence 99999654321 124568899999999999876532 567899999999964221110 00111
Q ss_pred CCCCChHHHHHHHHcCCeeEEEeccCCCCcccccCCCeeEEecCCccCCCCCCCCCCcceEEEEEee
Q 015684 274 SASVNSGFFTTMVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYHAYGKAGWERRARVVVASL 340 (402)
Q Consensus 274 ~~~~~~~~l~~l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~~y~~~~~~~g~rv~ei~~ 340 (402)
....+...+..++++++|+++||||+|.+.. ..+.|+.++.++++|+. ++. ..+|+|+++++.
T Consensus 190 ~~~~~~~~l~~ll~~~~V~~v~~GH~H~~~~-~~~~g~~~~~~~~~~~~-~~~--~~~g~~~~~v~~ 252 (262)
T cd07395 190 IPKSVRKPLLDKFKKAGVKAVFSGHYHRNAG-GRYGGLEMVVTSAIGAQ-LGN--DKSGLRIVKVTE 252 (262)
T ss_pred cCHHHHHHHHHHHHhcCceEEEECccccCCc-eEECCEEEEEcCceecc-cCC--CCCCcEEEEECC
Confidence 1223456677778888999999999999655 56789998888888853 332 479999999974
No 5
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.95 E-value=2.9e-26 Score=210.76 Aligned_cols=234 Identities=24% Similarity=0.239 Sum_probs=148.4
Q ss_pred eEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhC
Q 015684 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIAS 123 (402)
Q Consensus 44 ~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~ 123 (402)
|||+|+||+|++........... ...+.++.+.+.+++.+||+||++||++ +.+.....+.+....+.+...
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~-------~~~~~l~~~i~~i~~~~~d~vv~~GDlv-~~~~~~~~~~~~~~~~~l~~l 72 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYR-------NSLEKLEEAVEEWNRESLDFVVQLGDII-DGDNARAEEALDAVLAILDRL 72 (267)
T ss_pred CeEEEEeccccccCCCcccchHH-------HhHHHHHHHHHHHHcCCCCEEEECCCee-cCCCchHHHHHHHHHHHHHhc
Confidence 79999999998764321110000 1123344455556667899999999955 444442233343444444456
Q ss_pred CCCEEEEcCCCCCCCCCCHHHHHHHHHhcCCcccccCCCCCccccccccceEEeccCCCCCCCCceeEEEEEEeCCCCCC
Q 015684 124 NIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDSGDYST 203 (402)
Q Consensus 124 ~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lDs~~~~~ 203 (402)
++|++++|||||....... . .. . .. ....+..+|.+..++ ++++++||..++.
T Consensus 73 ~~p~~~v~GNHD~~~~~~~-~----~~-~-------~~---~~~~~~~yysf~~~~-----------~~~i~lds~~~~~ 125 (267)
T cd07396 73 KGPVHHVLGNHDLYNPSRE-Y----LL-L-------YT---LLGLGAPYYSFSPGG-----------IRFIVLDGYDISA 125 (267)
T ss_pred CCCEEEecCccccccccHh-h----hh-c-------cc---ccCCCCceEEEecCC-----------cEEEEEeCCcccc
Confidence 8999999999998644321 1 00 0 00 011233467777655 8899999964321
Q ss_pred CC---C----------------------CCCCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhc
Q 015684 204 VP---S----------------------VPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAY 258 (402)
Q Consensus 204 ~~---~----------------------~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~ 258 (402)
.. . ....|.++++|++||+++|++.+. ...++|+++|||+.....
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~----------~~~~viV~~Hhp~~~~~~ 195 (267)
T cd07396 126 LGRPEDTPKAENADDNSNLGLYLSEPRFVDWNGGIGEEQLQWLRNELQEADA----------NGEKVIIFSHFPLHPEST 195 (267)
T ss_pred ccCCCCChhhhhHHHhchhhhhccCccceeccCcCCHHHHHHHHHHHHHHHh----------cCCeEEEEEeccCCCCCC
Confidence 10 0 012478999999999999887653 457899999999854211
Q ss_pred ccCCCcccccCCcCCCCCCChHHHHHHHHc-CCeeEEEeccCCCCcccccCCCeeEEecCCccCCCCCCCCCCcceEEEE
Q 015684 259 FDQSNFTGVRQEGISSASVNSGFFTTMVAA-GDVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYHAYGKAGWERRARVVV 337 (402)
Q Consensus 259 ~~~~~~~G~~~~~~~~~~~~~~~l~~l~~~-~~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~~y~~~~~~~g~rv~e 337 (402)
. . .....+.+.+..++++ .+|+++|+||+|.+ .....+|+.++..|+++.+ ++ ..+.+-+++
T Consensus 196 -~--------~---~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~-~~~~~~gi~~~~~~a~~~~--~~--~~~~~~~~~ 258 (267)
T cd07396 196 -S--------P---HGLLWNHEEVLSILRAYGCVKACISGHDHEG-GYAQRHGIHFLTLEGMVET--PP--ESNAFGVVI 258 (267)
T ss_pred -C--------c---cccccCHHHHHHHHHhCCCEEEEEcCCcCCC-CccccCCeeEEEechhhcC--CC--CCCceEEEE
Confidence 0 0 0112355566677766 58999999999995 4556899999999999887 32 245677777
Q ss_pred Ee
Q 015684 338 AS 339 (402)
Q Consensus 338 i~ 339 (402)
+.
T Consensus 259 ~~ 260 (267)
T cd07396 259 VY 260 (267)
T ss_pred Ee
Confidence 75
No 6
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.94 E-value=2.2e-25 Score=202.38 Aligned_cols=227 Identities=23% Similarity=0.291 Sum_probs=147.0
Q ss_pred EEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhc--CCCEEEEcCCccCCCChhhHHHHHHHHHhHhHh
Q 015684 45 KILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAE--KPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIA 122 (402)
Q Consensus 45 ~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~ 122 (402)
||+++||+|++......+... .....++.+.+.+++. +||+||++|| +.+.+....++.+.+.++.
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~--------~~~~~l~~~~~~i~~~~~~~d~vi~~GD-l~~~~~~~~~~~~~~~l~~--- 68 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGV--------DTAASLEAVLAHINALHPRPDLVLVTGD-LTDDGSPESYERLRELLAA--- 68 (240)
T ss_pred CEEEEeCCccCCCCcceecCc--------CHHHHHHHHHHHHHhcCCCCCEEEECcc-CCCCCCHHHHHHHHHHHhh---
Confidence 699999999986532111100 1233445566666665 9999999999 5555555666666666654
Q ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHhcCCcccccCCCCCccccccccceEEeccCCCCCCCCceeEEEEEEeCCCCC
Q 015684 123 SNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDSGDYS 202 (402)
Q Consensus 123 ~~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lDs~~~~ 202 (402)
.++|+++|+||||... ...+.+.. .. . ..+..+|.+.+.+ ++++++||....
T Consensus 69 ~~~p~~~v~GNHD~~~-----~~~~~~~~----------~~-~-~~~~~~~~~~~~~-----------~~~i~lds~~~~ 120 (240)
T cd07402 69 LPIPVYLLPGNHDDRA-----AMRAVFPE----------LP-P-APGFVQYVVDLGG-----------WRLILLDSSVPG 120 (240)
T ss_pred cCCCEEEeCCCCCCHH-----HHHHhhcc----------cc-c-cccccceeEecCC-----------EEEEEEeCCCCC
Confidence 5899999999999732 11122111 00 0 1223456776665 899999995322
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccCCCcccccCCcCCCCCCChHHH
Q 015684 203 TVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGFF 282 (402)
Q Consensus 203 ~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~G~~~~~~~~~~~~~~~l 282 (402)
. ..++++++|++||++.|++. ..+++|+++|||+......+. .. ....+...+
T Consensus 121 ~-----~~~~~~~~ql~wL~~~L~~~------------~~~~~il~~H~pp~~~~~~~~------~~----~~~~~~~~~ 173 (240)
T cd07402 121 Q-----HGGELCAAQLDWLEAALAEA------------PDKPTLVFLHHPPFPVGIAWM------DA----IGLRNAEAL 173 (240)
T ss_pred C-----cCCEECHHHHHHHHHHHHhC------------CCCCEEEEECCCCccCCchhh------hh----hhCCCHHHH
Confidence 1 35679999999999997642 457899999998854211110 00 112355666
Q ss_pred HHHHHcC-CeeEEEeccCCCCcccccCCCeeEEecCCccCCCC--CC----CCCCcceEEEEEe
Q 015684 283 TTMVAAG-DVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYHAY--GK----AGWERRARVVVAS 339 (402)
Q Consensus 283 ~~l~~~~-~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~~y--~~----~~~~~g~rv~ei~ 339 (402)
..+++++ +++++||||+|. ......+|++++.+++.|++-- .+ ..-..|++-+.+.
T Consensus 174 ~~~l~~~~~v~~v~~GH~H~-~~~~~~~g~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (240)
T cd07402 174 AAVLARHPNVRAILCGHVHR-PIDGSWGGIPLLTAPSTCHQFAPDLDDFALDALAPGYRALSLH 236 (240)
T ss_pred HHHHhcCCCeeEEEECCcCc-hHHeEECCEEEEEcCcceeeecCCCCcccccccCCCCcEEEEe
Confidence 6777776 899999999999 5777889999999999886421 11 1123477776664
No 7
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.93 E-value=8.2e-25 Score=204.68 Aligned_cols=263 Identities=16% Similarity=0.111 Sum_probs=158.6
Q ss_pred CCceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChh--hHHHHHHHHHh
Q 015684 41 NGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDAT--DAAKSLNAAFA 118 (402)
Q Consensus 41 ~~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~--~~~~~~~~~l~ 118 (402)
+.++||++++|+|.+... ..++++.+.+. ..+||+||++||++++.+.. ..++.+.+.++
T Consensus 2 ~~~~~f~v~gD~~~~~~~----------------~~~~~~~l~~~--~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~ 63 (294)
T cd00839 2 DTPFKFAVFGDMGQNTNN----------------STNTLDHLEKE--LGNYDAILHVGDLAYADGYNNGSRWDTFMRQIE 63 (294)
T ss_pred CCcEEEEEEEECCCCCCC----------------cHHHHHHHHhc--cCCccEEEEcCchhhhcCCccchhHHHHHHHHH
Confidence 568999999999975221 12333333332 47999999999977666543 56677777777
Q ss_pred HhHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHhcCCcccccCCCCCccccccccceEEeccCCCCCCCCceeEEEEEEeC
Q 015684 119 PAIASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDS 198 (402)
Q Consensus 119 ~~~~~~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lDs 198 (402)
++. ..+|+++++||||............. .. ....+.......+..+|++.+++ +++++|||
T Consensus 64 ~~~-~~~P~~~~~GNHD~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~Ysf~~g~-----------v~fi~Lds 125 (294)
T cd00839 64 PLA-SYVPYMVTPGNHEADYNFSFYKIKAF----FP--RFRFPHSPSGSTSNLWYSFDVGP-----------VHFVSLST 125 (294)
T ss_pred HHH-hcCCcEEcCcccccccCCCCcccccc----cc--cccccCCCCCCCCCceEEEeeCC-----------EEEEEEec
Confidence 654 47999999999998654331110000 00 00001000111223468888776 89999999
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccCCCcccccCCcCCCCCCC
Q 015684 199 GDYSTVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVN 278 (402)
Q Consensus 199 ~~~~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~G~~~~~~~~~~~~ 278 (402)
..... .+.+..+|++||++.|++..+ ...+++|+++|+|++...... ... ......
T Consensus 126 ~~~~~------~~~~~~~q~~WL~~~L~~~~~---------~~~~~~iv~~H~P~~~~~~~~-------~~~--~~~~~~ 181 (294)
T cd00839 126 EVDFY------GDGPGSPQYDWLEADLAKVDR---------SKTPWIIVMGHRPMYCSNTDH-------DDC--IEGEKM 181 (294)
T ss_pred ccccc------cCCCCcHHHHHHHHHHHHhcc---------cCCCeEEEEeccCcEecCccc-------ccc--chhHHH
Confidence 53321 356889999999999886543 134568999999996532111 000 001124
Q ss_pred hHHHHHHHHcCCeeEEEeccCCCCccccc---------------CCCeeEEecCCccCCCCCC------CC------CCc
Q 015684 279 SGFFTTMVAAGDVKAVFTGHDHVNDFCGR---------------LTGIQLCYGGGFGYHAYGK------AG------WER 331 (402)
Q Consensus 279 ~~~l~~l~~~~~v~~v~~GH~H~~~~~~~---------------~~gi~~~~~~~~g~~~y~~------~~------~~~ 331 (402)
.+.|..|+++++|+++|+||+|.+.+... .+|+..+..|+.|...+.. .. ...
T Consensus 182 ~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~~~~~~~~~~~g~~yiv~G~~G~~~~~~~~~~~~~~~~~~~~~~~ 261 (294)
T cd00839 182 RAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVVGDCNPYSNPKGPVHIVIGAGGNDEGLDPFSAPPPAWSAFRESDY 261 (294)
T ss_pred HHHHHHHHHHhCCCEEEEccceeeEeechhhCCEeccccccccCCCccEEEEECCCccccCcCcccCCCCCceEEEeccC
Confidence 46778888888999999999998654322 2566666666555332211 01 235
Q ss_pred ceEEEEEeeccccccCCCcccceEEEEEcCCCCCCcccceeee
Q 015684 332 RARVVVASLEKTEKRGWGDVKSIKTWKRLDDEHLTGVDGHVLW 374 (402)
Q Consensus 332 g~rv~ei~~~~~~~~~~~~~~~~~tw~r~~~~~~~~~d~~~~~ 374 (402)
|+-++++..+ ..-...|++..++ +++|..+|.
T Consensus 262 g~~~~~~~~~---------t~l~~~~~~~~~g--~v~D~f~i~ 293 (294)
T cd00839 262 GFGRLTVHNS---------THLHFEWIRNDDG--VVIDSFWII 293 (294)
T ss_pred CEEEEEEEec---------CeEEEEEEECCCC--eEEEEEEEe
Confidence 6666665421 1234455666655 488887764
No 8
>PLN02533 probable purple acid phosphatase
Probab=99.91 E-value=9.6e-23 Score=197.84 Aligned_cols=263 Identities=19% Similarity=0.167 Sum_probs=156.7
Q ss_pred CceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhH
Q 015684 42 GEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAI 121 (402)
Q Consensus 42 ~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~ 121 (402)
.+++|++++|+|..... .. ..+.+++.+||+|+++||+++.+.....++.+.+.++++.
T Consensus 138 ~~~~f~v~GDlG~~~~~-----------------~~----tl~~i~~~~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l~ 196 (427)
T PLN02533 138 FPIKFAVSGDLGTSEWT-----------------KS----TLEHVSKWDYDVFILPGDLSYANFYQPLWDTFGRLVQPLA 196 (427)
T ss_pred CCeEEEEEEeCCCCccc-----------------HH----HHHHHHhcCCCEEEEcCccccccchHHHHHHHHHHhhhHh
Confidence 57999999999853211 11 2233456799999999997776554455667777777664
Q ss_pred hCCCCEEEEcCCCCCCCCCC--HHHHHHHHHhcCCcccccCCCCCccccccccceEEeccCCCCCCCCceeEEEEEEeCC
Q 015684 122 ASNIPWVAVLGNHDQESTLS--REGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDSG 199 (402)
Q Consensus 122 ~~~iP~~~v~GNHD~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lDs~ 199 (402)
..+|+++++||||...... ......+...+ ..|.......+..+|++.+++ +++++|||.
T Consensus 197 -s~~P~m~~~GNHE~~~~~~~~~~~f~~y~~rf------~mP~~~~g~~~~~yYSfd~g~-----------vhfI~Lds~ 258 (427)
T PLN02533 197 -SQRPWMVTHGNHELEKIPILHPEKFTAYNARW------RMPFEESGSTSNLYYSFNVYG-----------VHIIMLGSY 258 (427)
T ss_pred -hcCceEEeCccccccccccccCcCccchhhcc------cCCccccCCCCCceEEEEECC-----------EEEEEEeCC
Confidence 5799999999999864210 00000111111 111110001123468888887 899999994
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccCCCcccccCCcCCCCCCCh
Q 015684 200 DYSTVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNS 279 (402)
Q Consensus 200 ~~~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~G~~~~~~~~~~~~~ 279 (402)
.. + ....+|++||++.|++..+ ....++|+++|+|++...... .+.. +. ....
T Consensus 259 ~~--------~-~~~~~Q~~WLe~dL~~~~r---------~~~pwiIv~~H~P~y~s~~~~----~~~~-~~----~~~r 311 (427)
T PLN02533 259 TD--------F-EPGSEQYQWLENNLKKIDR---------KTTPWVVAVVHAPWYNSNEAH----QGEK-ES----VGMK 311 (427)
T ss_pred cc--------c-cCchHHHHHHHHHHHhhcc---------cCCCEEEEEeCCCeeeccccc----CCcc-hh----HHHH
Confidence 21 1 1367899999999987643 144568899999997632111 0000 00 0123
Q ss_pred HHHHHHHHcCCeeEEEeccCCCCccccc-------CCCeeEEecCCccCC-----CCC--CCCC------CcceEEEEEe
Q 015684 280 GFFTTMVAAGDVKAVFTGHDHVNDFCGR-------LTGIQLCYGGGFGYH-----AYG--KAGW------ERRARVVVAS 339 (402)
Q Consensus 280 ~~l~~l~~~~~v~~v~~GH~H~~~~~~~-------~~gi~~~~~~~~g~~-----~y~--~~~~------~~g~rv~ei~ 339 (402)
+.|+.|+.+++|+++|+||+|.+.+... ..|...+..|+.|.. .+. .+.| .-|+-.+++.
T Consensus 312 ~~le~Ll~~~~VdlvlsGH~H~YeR~~p~~~~~~~~~gpvyiv~G~gG~~e~~~~~~~~~~~~~s~~r~~~~G~~~l~v~ 391 (427)
T PLN02533 312 ESMETLLYKARVDLVFAGHVHAYERFDRVYQGKTDKCGPVYITIGDGGNREGLATKYIDPKPDISLFREASFGHGQLNVV 391 (427)
T ss_pred HHHHHHHHHhCCcEEEecceecccccccccCCccCCCCCEEEEeCCCccccccccccCCCCCCceeEEeccCCEEEEEEE
Confidence 5678888889999999999998654321 234444444444421 111 1112 1233333332
Q ss_pred eccccccCCCcccceEEEEEcCCCCCCcccceeeeecCCC
Q 015684 340 LEKTEKRGWGDVKSIKTWKRLDDEHLTGVDGHVLWSKTSS 379 (402)
Q Consensus 340 ~~~~~~~~~~~~~~~~tw~r~~~~~~~~~d~~~~~~~~~~ 379 (402)
. ..+-..+|+|++++..++.|+.||.+...+
T Consensus 392 n---------~t~l~~~~~~~~~~~~~~~D~~~i~~~~~~ 422 (427)
T PLN02533 392 D---------ANTMEWTWHRNDDDQSVASDSVWLKSLLTE 422 (427)
T ss_pred c---------CCeEEEEEEecCCCCceeeeEEEEEeccCC
Confidence 1 125566889988876668899888776554
No 9
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.90 E-value=1e-22 Score=180.78 Aligned_cols=160 Identities=18% Similarity=0.234 Sum_probs=108.3
Q ss_pred eEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCCh-hhHHHHHHHHHhHhHh
Q 015684 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDA-TDAAKSLNAAFAPAIA 122 (402)
Q Consensus 44 ~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~-~~~~~~~~~~l~~~~~ 122 (402)
|+|+++||+|++...... ......+.+.+.+++.+||+||++||++ +.+. ...+..+.+.++.+.+
T Consensus 1 f~~~~~~D~q~~~~~~~~------------~~~~~~~~i~~~~~~~~~d~iv~~GDl~-~~~~~~~~~~~~~~~~~~l~~ 67 (214)
T cd07399 1 FTLAVLPDTQYYTESYPE------------VFDAQTDWIVDNAEALNIAFVLHLGDIV-DDGDNDAEWEAADKAFARLDK 67 (214)
T ss_pred CEEEEecCCCcCCcCCHH------------HHHHHHHHHHHHHHHcCCCEEEECCCcc-CCCCCHHHHHHHHHHHHHHHH
Confidence 689999999987542110 0122345566666678999999999955 4444 6678888888887766
Q ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHhcCCcccccCCCCCccccccccceEEeccCCCCCCCCceeEEEEEEeCCCCC
Q 015684 123 SNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDSGDYS 202 (402)
Q Consensus 123 ~~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lDs~~~~ 202 (402)
.++|+++++||||. ++.+|+.
T Consensus 68 ~~~p~~~~~GNHD~--------------------------------------------------------~~~ld~~--- 88 (214)
T cd07399 68 AGIPYSVLAGNHDL--------------------------------------------------------VLALEFG--- 88 (214)
T ss_pred cCCcEEEECCCCcc--------------------------------------------------------hhhCCCC---
Confidence 78999999999992 1112331
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccCCCcccccCCcCCCCCCChHHH
Q 015684 203 TVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGFF 282 (402)
Q Consensus 203 ~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~G~~~~~~~~~~~~~~~l 282 (402)
.+.+|++||+++|++. +++++|+++|||+.... .+..... .+ .....+.+.|
T Consensus 89 ----------~~~~ql~WL~~~L~~~------------~~~~~iv~~H~p~~~~~-~~~~~~~-~~----~~~~~~~~~~ 140 (214)
T cd07399 89 ----------PRDEVLQWANEVLKKH------------PDRPAILTTHAYLNCDD-SRPDSID-YD----SDVNDGQQIW 140 (214)
T ss_pred ----------CCHHHHHHHHHHHHHC------------CCCCEEEEecccccCCC-CcCcccc-cc----cccccHHHHH
Confidence 3578999999997742 56789999999986421 1110000 00 0011233568
Q ss_pred HHHHHcC-CeeEEEeccCCCCc
Q 015684 283 TTMVAAG-DVKAVFTGHDHVND 303 (402)
Q Consensus 283 ~~l~~~~-~v~~v~~GH~H~~~ 303 (402)
.+|++++ +|+++||||+|...
T Consensus 141 ~~ll~~~~~V~~v~~GH~H~~~ 162 (214)
T cd07399 141 DKLVKKNDNVFMVLSGHVHGAG 162 (214)
T ss_pred HHHHhCCCCEEEEEccccCCCc
Confidence 7888776 89999999999853
No 10
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.89 E-value=4.4e-22 Score=184.56 Aligned_cols=220 Identities=18% Similarity=0.241 Sum_probs=135.7
Q ss_pred eEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhh-----HHHHHHHHHh
Q 015684 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATD-----AAKSLNAAFA 118 (402)
Q Consensus 44 ~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~-----~~~~~~~~l~ 118 (402)
++|++++|...+... ......+.|.+.+++.+|||||++||++++.+... ..+.+.+.+.
T Consensus 1 ~~f~~~gD~g~~~~~---------------~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~ 65 (277)
T cd07378 1 LRFLALGDWGGGGTA---------------GQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYS 65 (277)
T ss_pred CeEEEEeecCCCCCH---------------HHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHcc
Confidence 478999999875211 12345567777777789999999999877765321 1123334443
Q ss_pred HhHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHhcCCcccccCCCCCccccccccceEEeccCCCCCCCCceeEEEEEEeC
Q 015684 119 PAIASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDS 198 (402)
Q Consensus 119 ~~~~~~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lDs 198 (402)
.+ ..++|+++++||||........ ..+. ... ..+ +...+..+|++.....+ ....+++++|||
T Consensus 66 ~~-~~~~P~~~v~GNHD~~~~~~~~--~~~~-~~~-----~~~---~~~~~~~~y~~~~~~~~-----~~~~~~~i~LDt 128 (277)
T cd07378 66 AP-SLQVPWYLVLGNHDYSGNVSAQ--IDYT-KRP-----NSP---RWTMPAYYYRVSFPFPS-----SDTTVEFIMIDT 128 (277)
T ss_pred ch-hhcCCeEEecCCcccCCCchhe--eehh-ccC-----CCC---CccCcchheEEEeecCC-----CCCEEEEEEEeC
Confidence 33 2589999999999997543211 0000 000 011 11122245666654210 012389999999
Q ss_pred CCCCCCCC------CCCCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccCCCcccccCCcC
Q 015684 199 GDYSTVPS------VPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGI 272 (402)
Q Consensus 199 ~~~~~~~~------~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~G~~~~~~ 272 (402)
..+..... ....+.+..+|++||++.|++. ..+++||++|||+....... ..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~Q~~wL~~~L~~~------------~~~~~iv~~H~P~~~~~~~~------~~---- 186 (277)
T cd07378 129 VPLCGNSDDIASPYGPPNGKLAEEQLAWLEKTLAAS------------TADWKIVVGHHPIYSSGEHG------PT---- 186 (277)
T ss_pred hhHcCccccccccccCcchhhHHHHHHHHHHHHHhc------------CCCeEEEEeCccceeCCCCC------Cc----
Confidence 76532211 1124678999999999997643 34789999999986521110 00
Q ss_pred CCCCCChHHHHHHHHcCCeeEEEeccCCCCcccccCC--CeeEEecCCccC
Q 015684 273 SSASVNSGFFTTMVAAGDVKAVFTGHDHVNDFCGRLT--GIQLCYGGGFGY 321 (402)
Q Consensus 273 ~~~~~~~~~l~~l~~~~~v~~v~~GH~H~~~~~~~~~--gi~~~~~~~~g~ 321 (402)
......+..++++++|+++|+||+|... ....+ |+.++.+|+.|.
T Consensus 187 ---~~~~~~l~~l~~~~~v~~vl~GH~H~~~-~~~~~~~~~~~i~~G~~~~ 233 (277)
T cd07378 187 ---SCLVDRLLPLLKKYKVDAYLSGHDHNLQ-HIKDDGSGTSFVVSGAGSK 233 (277)
T ss_pred ---HHHHHHHHHHHHHcCCCEEEeCCcccce-eeecCCCCcEEEEeCCCcc
Confidence 0123567778888889999999999854 33444 888777766554
No 11
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.89 E-value=5.1e-22 Score=181.09 Aligned_cols=206 Identities=16% Similarity=0.168 Sum_probs=119.2
Q ss_pred EEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCCh--------hhHHHHHHHHH
Q 015684 46 ILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDA--------TDAAKSLNAAF 117 (402)
Q Consensus 46 i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~--------~~~~~~~~~~l 117 (402)
|+|+||+|++...... .....+.+.+.+++.+||+||++||++..... ...++.+.+.+
T Consensus 2 ~~~iSDlH~g~~~~~~-------------~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~ 68 (256)
T cd07401 2 FVHISDIHVSSFHPPN-------------RAQDETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNIL 68 (256)
T ss_pred EEEecccccCCcCchh-------------hhhHHHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHH
Confidence 7999999999653211 00011446677788899999999996654321 12233444444
Q ss_pred hHhHhC-CCCEEEEcCCCCCCCCCCHHHHHHHHHhcCCcccccCCCCCccccccccceEEe--ccCCCCCCCCceeEEEE
Q 015684 118 APAIAS-NIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEI--GGVKGSGFENKSVLNLY 194 (402)
Q Consensus 118 ~~~~~~-~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~--~~~~~~~~~~~~~~~l~ 194 (402)
...... .+|++.++||||.......+...+.+..+. ... ......|.... ++ +.++
T Consensus 69 ~~~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~y~---~~~-------~~~~~~~~~~~~~~~-----------~~~I 127 (256)
T cd07401 69 KESSVINKEKWFDIRGNHDLFNIPSLDSENNYYRKYS---ATG-------RDGSFSFSHTTRFGN-----------YSFI 127 (256)
T ss_pred HHhCCCCcceEEEeCCCCCcCCCCCccchhhHHHHhh---eec-------CCCccceEEEecCCC-----------EEEE
Confidence 332222 589999999999965433222222221110 000 01111222221 22 8899
Q ss_pred EEeCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccCCCcccccCCcCC
Q 015684 195 FLDSGDYSTVP-SVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGIS 273 (402)
Q Consensus 195 ~lDs~~~~~~~-~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~G~~~~~~~ 273 (402)
+|||..+.... .....|.+.++|++||++.|++.. ..+++||++|||+....... .
T Consensus 128 ~Ldt~~~~~~~~~~~~~g~l~~~ql~wL~~~L~~~~-----------~~~~~IV~~HhP~~~~~~~~--------~---- 184 (256)
T cd07401 128 GVDPTLFPGPKRPFNFFGSLDKKLLDRLEKELEKST-----------NSNYTIWFGHYPTSTIISPS--------A---- 184 (256)
T ss_pred EEcCccCCCCCCCCceeccCCHHHHHHHHHHHHhcc-----------cCCeEEEEEcccchhccCCC--------c----
Confidence 99997542111 111347899999999999877542 44679999999984311000 0
Q ss_pred CCCCChHHHHHHHHcCCeeEEEeccCCCCcc-c-ccCCCe
Q 015684 274 SASVNSGFFTTMVAAGDVKAVFTGHDHVNDF-C-GRLTGI 311 (402)
Q Consensus 274 ~~~~~~~~l~~l~~~~~v~~v~~GH~H~~~~-~-~~~~gi 311 (402)
....+ +..++++++|+++||||+|.+.. . ..++|+
T Consensus 185 --~~~~~-~~~ll~~~~v~~vl~GH~H~~~~~~p~h~~~~ 221 (256)
T cd07401 185 --KSSSK-FKDLLKKYNVTAYLCGHLHPLGGLEPVHYAGH 221 (256)
T ss_pred --chhHH-HHHHHHhcCCcEEEeCCccCCCcceeeeecCC
Confidence 01123 66677777899999999999544 1 234555
No 12
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.88 E-value=3.4e-21 Score=180.22 Aligned_cols=222 Identities=20% Similarity=0.240 Sum_probs=130.5
Q ss_pred EEEEeccCCcCCC----C--CCCCCCCc------------cccc--CC-CChhHHHHHHHHHHhc--CCCEEEEcCCccC
Q 015684 46 ILQVADMHFANGK----T--TPCLDVLP------------SQVA--GC-SDLNTTAFINRMISAE--KPDLIVFTGDNIF 102 (402)
Q Consensus 46 i~~iSDlH~~~~~----~--~~~~~~~~------------~~~~--~~-~~~~~~~~l~~~i~~~--~pD~vv~~GDli~ 102 (402)
|+|+||+|++... . ..|..... ..++ .| ....+++.+.+.+++. +|||||++||++.
T Consensus 1 ~l~~sDiH~D~~Y~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~G~~~CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~ 80 (296)
T cd00842 1 FLHISDIHYDPLYKVGSEYSANCHSPLCCRDESGDISPPAGPWGDYGCDSPWRLVESALEAIKKNHPKPDFILWTGDLVR 80 (296)
T ss_pred CEEeeccCCCCCCcCCCCCcCCCCCCCccCCCCCCCCCCCCCCcCcCCCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCC
Confidence 6899999998433 1 33443321 1112 13 4456677777777766 9999999999666
Q ss_pred CCChhhHHH-----HHHHHHhHhHh--CCCCEEEEcCCCCCCCCC------CH----HHHHHHHHhcCCcccccCCCCC-
Q 015684 103 GFDATDAAK-----SLNAAFAPAIA--SNIPWVAVLGNHDQESTL------SR----EGVMKHIVTLKNTLSQVNPSDA- 164 (402)
Q Consensus 103 ~~~~~~~~~-----~~~~~l~~~~~--~~iP~~~v~GNHD~~~~~------~~----~~~~~~~~~~~~~~~~~~p~~~- 164 (402)
........+ .+...+..+.+ .++|+++++||||..... .. +.+.+....+ .+.+.
T Consensus 81 h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~~~~~~~~~~~~~~~~~~~~w~~~-------l~~~~~ 153 (296)
T cd00842 81 HDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPVNQFPPNNSPSWLYDALAELWKSW-------LPEEAE 153 (296)
T ss_pred CCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCcccccCCcccccHHHHHHHHHHHhh-------cCHHHH
Confidence 654321111 12223332322 579999999999986431 11 1222222211 11110
Q ss_pred ccccccccceEEeccCCCCCCCCceeEEEEEEeCCCCCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCC
Q 015684 165 HIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDSGDYSTVPSVP--GYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAP 242 (402)
Q Consensus 165 ~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lDs~~~~~~~~~~--~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~ 242 (402)
.....-++|...+.+ .+++++|||..+....... ..+....+|++||+++|+++++ .+
T Consensus 154 ~~~~~ggYY~~~~~~----------~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~a~~----------~~ 213 (296)
T cd00842 154 ETFKKGGYYSVPVKP----------GLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDELQEAEQ----------AG 213 (296)
T ss_pred HHhhcceEEEEEcCC----------CeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHHHHHHHH----------CC
Confidence 111222556666322 2899999997664432211 1234568999999999998875 56
Q ss_pred CCeEEEEecChhhhhcccCCCcccccCCcCCCCCCChHHHHHHHHcCC--eeEEEeccCCCCcccccC
Q 015684 243 APGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGFFTTMVAAGD--VKAVFTGHDHVNDFCGRL 308 (402)
Q Consensus 243 ~~~iv~~H~P~~~~~~~~~~~~~G~~~~~~~~~~~~~~~l~~l~~~~~--v~~v~~GH~H~~~~~~~~ 308 (402)
.+++|++|+|+....... . ....+.+..+++++. |.++|+||+|..++...+
T Consensus 214 ~~v~I~~HiPp~~~~~~~-------~-------~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~~~~~~ 267 (296)
T cd00842 214 EKVWIIGHIPPGVNSYDT-------L-------ENWSERYLQIINRYSDTIAGQFFGHTHRDEFRVFY 267 (296)
T ss_pred CeEEEEeccCCCCccccc-------c-------hHHHHHHHHHHHHHHHhhheeeecccccceEEEEe
Confidence 789999999985421000 0 123455677777764 789999999997665544
No 13
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=99.85 E-value=9.4e-20 Score=171.38 Aligned_cols=274 Identities=18% Similarity=0.211 Sum_probs=173.3
Q ss_pred CCcceeec----CCCceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChh
Q 015684 32 QERKLRFR----QNGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDAT 107 (402)
Q Consensus 32 ~~~~l~~~----~~~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~ 107 (402)
+.+...|+ ++.+.++++++|+-....... + +.......++|+|++.||+.+..+..
T Consensus 132 wS~~f~F~t~p~~~~~~~~~i~GDlG~~~~~~s-----------------~---~~~~~~~~k~d~vlhiGDlsYa~~~~ 191 (452)
T KOG1378|consen 132 WSEIFSFKTPPGQDSPTRAAIFGDMGCTEPYTS-----------------T---LRNQEENLKPDAVLHIGDLSYAMGYS 191 (452)
T ss_pred cccceEeECCCCccCceeEEEEccccccccccc-----------------h---HhHHhcccCCcEEEEecchhhcCCCC
Confidence 34444554 346899999999988765421 1 11111223799999999988888766
Q ss_pred -hHHHHHHHHHhHhHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHhcCCcccccCCCCCccccccccceEEeccCCCCCCC
Q 015684 108 -DAAKSLNAAFAPAIASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFE 186 (402)
Q Consensus 108 -~~~~~~~~~l~~~~~~~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~ 186 (402)
..++.+.+.++++. +.+|++++.||||....... .+ .++......|.........-+|++++++
T Consensus 192 n~~wD~f~r~vEp~A-s~vPymv~~GNHE~d~~~~~----~F---~~y~~Rf~mP~~~s~s~~~l~YSfd~G~------- 256 (452)
T KOG1378|consen 192 NWQWDEFGRQVEPIA-SYVPYMVCSGNHEIDWPPQP----CF---VPYSARFNMPGNSSESDSNLYYSFDVGG------- 256 (452)
T ss_pred ccchHHHHhhhhhhh-ccCceEEecccccccCCCcc----cc---cccceeeccCCCcCCCCCceeEEEeecc-------
Confidence 58889999999874 78999999999999765321 00 0111111112110111112468999988
Q ss_pred CceeEEEEEEeCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccCCCccc
Q 015684 187 NKSVLNLYFLDSGDYSTVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTG 266 (402)
Q Consensus 187 ~~~~~~l~~lDs~~~~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~G 266 (402)
+++++|+|..+. +. ....+|.+||++.|++..+. +..++|++.|.|++......
T Consensus 257 ----vhfv~lsse~~~---~~----~~~~~QY~WL~~dL~~v~r~---------~tPWlIv~~HrP~Y~S~~~~------ 310 (452)
T KOG1378|consen 257 ----VHFVVLSTETYY---NF----LKGTAQYQWLERDLASVDRK---------KTPWLIVQGHRPMYCSSNDA------ 310 (452)
T ss_pred ----EEEEEEeccccc---cc----cccchHHHHHHHHHHHhccc---------CCCeEEEEecccceecCCch------
Confidence 999999996443 11 13567999999999988652 37899999999997643210
Q ss_pred ccCCcCCCCCCChHHHHHHHHcCCeeEEEeccCCCCcccccCCC------------------eeEEecCCc---c-----
Q 015684 267 VRQEGISSASVNSGFFTTMVAAGDVKAVFTGHDHVNDFCGRLTG------------------IQLCYGGGF---G----- 320 (402)
Q Consensus 267 ~~~~~~~~~~~~~~~l~~l~~~~~v~~v~~GH~H~~~~~~~~~g------------------i~~~~~~~~---g----- 320 (402)
...|+.. ..-...|+.|+-+++|+++|.||.|.+++....-+ +.+..|.+. +
T Consensus 311 ~~reG~~--~~~~~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~~~~~~~~~~~d~~aPvyI~~G~~G~~e~~~~~~ 388 (452)
T KOG1378|consen 311 HYREGEF--ESMREGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTCGTGWGPVHLVDGMAPIYITVGDGGNHEHLDPFS 388 (452)
T ss_pred hhccCcc--hhhHHHHHHHHHHhceeEEEeccceehhccchhhcceeeccCCcccccCCCCCEEEEEccCCcccccCccc
Confidence 1112110 01124689999999999999999999765443211 222222111 1
Q ss_pred -----CCCCCCCCCCcceEEEEEeeccccccCCCcccceEEEEEcCCCCCCcccceeeeecCCC
Q 015684 321 -----YHAYGKAGWERRARVVVASLEKTEKRGWGDVKSIKTWKRLDDEHLTGVDGHVLWSKTSS 379 (402)
Q Consensus 321 -----~~~y~~~~~~~g~rv~ei~~~~~~~~~~~~~~~~~tw~r~~~~~~~~~d~~~~~~~~~~ 379 (402)
++.+.. -.-|+-++++.. + ++...+|.|+.+++.++.|..|+.+.-..
T Consensus 389 ~~~p~~Sa~R~--~dfG~~~L~v~N-----~----TH~~~~~~~~~d~~g~~~D~fwl~k~~~~ 441 (452)
T KOG1378|consen 389 SPQPEWSAFRE--GDFGYTRLTAKN-----G----THAHVHWVRNSDASGVVIDSFWLIKDYRD 441 (452)
T ss_pred CCCCccccccc--ccCCeEEEEEec-----C----ceEEEEEEeccCCCceEeeeEEEEcccCc
Confidence 111221 234677777752 1 37899999998877778999887765443
No 14
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.85 E-value=1.8e-19 Score=162.05 Aligned_cols=215 Identities=18% Similarity=0.071 Sum_probs=121.1
Q ss_pred EEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhc--CCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhC
Q 015684 46 ILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAE--KPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIAS 123 (402)
Q Consensus 46 i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~ 123 (402)
|.++||||++....... +.... ...+..+.+.+.++.. +||+||++||+ +..+..+. +.+.++.+...
T Consensus 1 ~~~~sDlHl~~~~~~~~-~~~g~-----~~~~~~~~i~~~~~~~~~~~D~viiaGDl-~~~~~~~~---~~~~l~~l~~l 70 (232)
T cd07393 1 IFAIADLHLNLDPTKPM-DVFGP-----EWKNHTEKIKENWDNVVAPEDIVLIPGDI-SWAMKLEE---AKLDLAWIDAL 70 (232)
T ss_pred CeEEEeeccCCCCCCCC-cccCc-----cHHHHHHHHHHHHHhcCCCCCEEEEcCCC-ccCCChHH---HHHHHHHHHhC
Confidence 46899999985321100 00000 1234556666666665 99999999994 44433222 22333333334
Q ss_pred CCCEEEEcCCCCCCCCCCHHHHHHHHHhcCCcccccCCCCCccccccccceEEeccCCCCCCCCceeEEEEEEeCCCCCC
Q 015684 124 NIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDSGDYST 203 (402)
Q Consensus 124 ~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lDs~~~~~ 203 (402)
..|+++|+||||.+. ...+.+.+.+..... . .. .+..+.+.+ +.++.++...+..
T Consensus 71 ~~~v~~V~GNHD~~~-~~~~~~~~~l~~~~~----------~-~~--~n~~~~~~~-----------i~i~G~~~~~~~~ 125 (232)
T cd07393 71 PGTKVLLKGNHDYWW-GSASKLRKALEESRL----------A-LL--FNNAYIDDD-----------VAICGTRGWDNPG 125 (232)
T ss_pred CCCeEEEeCCccccC-CCHHHHHHHHHhcCe----------E-Ee--ccCcEEECC-----------EEEEEEEeeCCCC
Confidence 568999999999843 233333333322100 0 00 022222222 5566665321111
Q ss_pred CCC--------CCCCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccCCCcccccCCcCCCC
Q 015684 204 VPS--------VPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSA 275 (402)
Q Consensus 204 ~~~--------~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~G~~~~~~~~~ 275 (402)
.+. ....+.+..+|++||++.|++.... ....++|+++|+|+....
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~--------~~~~~~i~~~H~p~~~~~------------------ 179 (232)
T cd07393 126 NPWPPINETLKVEEDEKIFERELERLELSLKAAKKR--------EKEKIKIVMLHYPPANEN------------------ 179 (232)
T ss_pred CccccccccccchhHHHHHHHHHHHHHHHHHHHHhC--------CCCCCEEEEECCCCcCCC------------------
Confidence 110 0112445678999999998876542 123579999999874310
Q ss_pred CCChHHHHHHHHcCCeeEEEeccCCCCcc----cccCCCeeEEecCCccCC
Q 015684 276 SVNSGFFTTMVAAGDVKAVFTGHDHVNDF----CGRLTGIQLCYGGGFGYH 322 (402)
Q Consensus 276 ~~~~~~l~~l~~~~~v~~v~~GH~H~~~~----~~~~~gi~~~~~~~~g~~ 322 (402)
.+...+..++++.+++++++||+|.... ....+|+.+...++++++
T Consensus 180 -~~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~gi~~~~~~~~~~~ 229 (232)
T cd07393 180 -GDDSPISKLIEEYGVDICVYGHLHGVGRDRAINGERGGIRYQLVSADYLN 229 (232)
T ss_pred -CCHHHHHHHHHHcCCCEEEECCCCCCcccccccceECCEEEEEEcchhcC
Confidence 1223345565666899999999998543 234789988877777654
No 15
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.83 E-value=1.3e-19 Score=164.07 Aligned_cols=233 Identities=15% Similarity=0.093 Sum_probs=114.5
Q ss_pred EEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCC
Q 015684 45 KILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASN 124 (402)
Q Consensus 45 ~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~ 124 (402)
||+++||+|++.... ...+.++.+.+.+++.+||+||++||++ +.. ...+..+ +.+... .+
T Consensus 1 ki~~iSDlH~~~~~~--------------~~~~~l~~~~~~~~~~~~d~vv~~GDl~-~~~-~~~~~~~-~~l~~~--~~ 61 (239)
T TIGR03729 1 KIAFSSDLHIDLNHF--------------DTEEMLETLAQYLKKQKIDHLHIAGDIS-NDF-QRSLPFI-EKLQEL--KG 61 (239)
T ss_pred CEEEEEeecCCCCCC--------------CHHHHHHHHHHHHHhcCCCEEEECCccc-cch-hhHHHHH-HHHHHh--cC
Confidence 689999999852210 0122345566666678999999999954 432 2222222 233221 47
Q ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHh--cCCcccccCCCCCccccccccceEEeccCCCCCCCCceeEEEEEEeCCCCC
Q 015684 125 IPWVAVLGNHDQESTLSREGVMKHIVT--LKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDSGDYS 202 (402)
Q Consensus 125 iP~~~v~GNHD~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lDs~~~~ 202 (402)
+|+++++||||.......+++.+.... +......+.-.+++.+.-.+.+.+.. +............+-+..++.
T Consensus 62 ~pv~~v~GNHD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ig~~gw~d~~~-~~~~~~~~~~~~~~d~~~~~~--- 137 (239)
T TIGR03729 62 IKVTFNAGNHDMLKDLTYEEIESNDSPLYLHNRFIDIPNTQWRIIGNNGWYDYSF-SNDKTSKEILRWKKSFWFDRR--- 137 (239)
T ss_pred CcEEEECCCCCCCCCCCHHHHHhccchhhhcccccccCCCceEEEeeccceeccc-ccccCHHHHHHhhhcEEeecc---
Confidence 899999999998644443333221100 00000000000000000000111111 000000000000000122221
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccCCCcccccCCcCCCCCCChHHH
Q 015684 203 TVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGFF 282 (402)
Q Consensus 203 ~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~G~~~~~~~~~~~~~~~l 282 (402)
.......+.+.+++++||++.|++. ..+++|+++|||+....... . .+...-....+..++..+
T Consensus 138 -~~~~~~~~~~~~~~l~~l~~~l~~~------------~~~~~ivvtH~pP~~~~~~~--~-~~~~~~~~~~~~~~s~~l 201 (239)
T TIGR03729 138 -IKRPMSDPERTAIVLKQLKKQLNQL------------DNKQVIFVTHFVPHRDFIYV--P-MDHRRFDMFNAFLGSQHF 201 (239)
T ss_pred -cCCCCChHHHHHHHHHHHHHHHHhc------------CCCCEEEEEcccchHHHhcC--C-CCCcchhhhhhccChHHH
Confidence 1111124567889999999997643 45689999999764311100 0 000000000123466677
Q ss_pred HHHHHcCCeeEEEeccCCCCcccccCCCeeEEec
Q 015684 283 TTMVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYG 316 (402)
Q Consensus 283 ~~l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~ 316 (402)
..+++++++++++|||+|........+|++++..
T Consensus 202 ~~li~~~~v~~~i~GH~H~~~~~~~i~~~~~~~~ 235 (239)
T TIGR03729 202 GQLLVKYEIKDVIFGHLHRRFGPLTIGGTTYHNR 235 (239)
T ss_pred HHHHHHhCCCEEEECCccCCCCCEEECCEEEEec
Confidence 8888887999999999999432334588887654
No 16
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.83 E-value=1.6e-18 Score=165.18 Aligned_cols=133 Identities=14% Similarity=0.175 Sum_probs=84.3
Q ss_pred ccccceEE-eccCCCCCCCCceeEEEEEEeCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEE
Q 015684 169 GFGNYNLE-IGGVKGSGFENKSVLNLYFLDSGDYSTVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLV 247 (402)
Q Consensus 169 g~~~y~~~-~~~~~~~~~~~~~~~~l~~lDs~~~~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv 247 (402)
+..+|++. ..+ +++++|||..+ +....|.++++|++||+++|++ .+++++||
T Consensus 290 G~~YYSFd~~gg-----------vrfIvLDSt~~----~G~~~G~L~eeQL~WLeqeLa~------------a~~k~VVV 342 (496)
T TIGR03767 290 GTGYYTFDIAGG-----------VRGISMDTTNR----AGGDEGSLGQTQFKWIKDTLRA------------SSDTLFVL 342 (496)
T ss_pred CCceEEEEeECC-----------EEEEEEeCCCc----CCCcCCccCHHHHHHHHHHHhc------------CCCCCEEE
Confidence 34567777 444 89999999632 1123688999999999999874 25678999
Q ss_pred EEecChhhhhcccCCCcccccCCcCCCCCCChHHHHHHHHcC-CeeEEEeccCCCCcccccC--------CCeeEEecCC
Q 015684 248 YFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGFFTTMVAAG-DVKAVFTGHDHVNDFCGRL--------TGIQLCYGGG 318 (402)
Q Consensus 248 ~~H~P~~~~~~~~~~~~~G~~~~~~~~~~~~~~~l~~l~~~~-~v~~v~~GH~H~~~~~~~~--------~gi~~~~~~~ 318 (402)
|+|||+......+.... .......+.+.+..+++.+ +|+++||||+|.+...... .|+|-+.++|
T Consensus 343 f~HHPp~s~g~~~~Dp~------~pg~~~~n~~eLldLL~~ypnV~aVfsGHvH~n~i~~~~~~~~~~p~~gfweI~TaS 416 (496)
T TIGR03767 343 FSHHTSWSMVNELTDPV------DPGEKRHLGTELVSLLLEHPNVLAWVNGHTHSNKITAHRRVEGVGKDKGFWEINTAS 416 (496)
T ss_pred EECCCCccccccccccc------cccccccCHHHHHHHHhcCCCceEEEECCcCCCccccccCCCCCCCcCCeEEEeccc
Confidence 99999854322221110 0001123554555555554 8999999999996533211 2455444332
Q ss_pred ccCCCCCCCCCCcceEEEEEeec
Q 015684 319 FGYHAYGKAGWERRARVVVASLE 341 (402)
Q Consensus 319 ~g~~~y~~~~~~~g~rv~ei~~~ 341 (402)
- ..|+.-+|+|||..+
T Consensus 417 l-------vdfPq~~Ri~Ei~~n 432 (496)
T TIGR03767 417 H-------IDFPQQGRIIELADN 432 (496)
T ss_pred c-------ccCCCCceEEEEEeC
Confidence 1 236778999999854
No 17
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.81 E-value=8.8e-18 Score=158.04 Aligned_cols=252 Identities=12% Similarity=0.110 Sum_probs=144.1
Q ss_pred CCceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChh-----hHHHHHHH
Q 015684 41 NGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDAT-----DAAKSLNA 115 (402)
Q Consensus 41 ~~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~-----~~~~~~~~ 115 (402)
++.++|+.++|.--+... .....+.|.+++++.++||||-+||++ .+|.. .....+.+
T Consensus 24 ~~~l~F~~vGDwG~g~~~----------------Q~~VA~~M~~~~~~~~~~FVls~GDNF-~~Gv~sv~Dp~f~~~FE~ 86 (394)
T PTZ00422 24 KAQLRFASLGNWGTGSKQ----------------QKLVASYLKQYAKNERVTFLVSPGSNF-PGGVDGLNDPKWKHCFEN 86 (394)
T ss_pred CCeEEEEEEecCCCCchh----------------HHHHHHHHHHHHHhCCCCEEEECCccc-cCCCCCccchhHHhhHhh
Confidence 578899999999843211 334567788888889999999999976 45422 12223334
Q ss_pred HHhHhH-hCCCCEEEEcCCCCCCCCCCHHHHHHHHHh---------cCCcc-cccCCCCCccccccccceE--EeccCCC
Q 015684 116 AFAPAI-ASNIPWVAVLGNHDQESTLSREGVMKHIVT---------LKNTL-SQVNPSDAHIIDGFGNYNL--EIGGVKG 182 (402)
Q Consensus 116 ~l~~~~-~~~iP~~~v~GNHD~~~~~~~~~~~~~~~~---------~~~~~-~~~~p~~~~~~~g~~~y~~--~~~~~~~ 182 (402)
...... ...+||+.|+||||...+... ++...... +.+.. ....| ++.....+|.+ .+....+
T Consensus 87 vY~~~s~~L~~Pwy~vLGNHDy~Gn~~A-Qi~r~~~~y~~~~~~~~~~y~~~~~~~~---RW~mP~~yY~~~~~f~~~~~ 162 (394)
T PTZ00422 87 VYSEESGDMQIPFFTVLGQADWDGNYNA-ELLKGQNVYLNGHGQTDIEYDSNNDIYP---KWIMPNYWYHYFTHFTDTSG 162 (394)
T ss_pred hccCcchhhCCCeEEeCCcccccCCchh-hhccccccccccccccccccccccccCC---CccCCchhheeeeeeecccc
Confidence 443321 157899999999998655432 11111000 00000 00111 22222223432 1111000
Q ss_pred C----CCCCceeEEEEEEeCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhc
Q 015684 183 S----GFENKSVLNLYFLDSGDYSTVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAY 258 (402)
Q Consensus 183 ~----~~~~~~~~~l~~lDs~~~~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~ 258 (402)
. .......+.++++||...+.. . .+....+.+++||+++|+..+ ....++||+.|||++....
T Consensus 163 ~~~~~~~~~~~~v~fifiDT~~l~~~--~-~~~~~~~~~w~~L~~~L~~a~----------k~a~WkIVvGHhPIySsG~ 229 (394)
T PTZ00422 163 PSLLKSGHKDMSVAFIFIDTWILSSS--F-PYKKVSERAWQDLKATLEYAP----------KIADYIIVVGDKPIYSSGS 229 (394)
T ss_pred cccccccCCCCEEEEEEEECchhccc--C-CccccCHHHHHHHHHHHHhhc----------cCCCeEEEEecCceeecCC
Confidence 0 001123478999999644321 1 123357789999999986432 2457999999999976321
Q ss_pred ccCCCcccccCCcCCCCCCChHHHHHHHHcCCeeEEEeccCCCCcccccCCCeeEEecCCccCCCCCC----C-----CC
Q 015684 259 FDQSNFTGVRQEGISSASVNSGFFTTMVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYHAYGK----A-----GW 329 (402)
Q Consensus 259 ~~~~~~~G~~~~~~~~~~~~~~~l~~l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~~y~~----~-----~~ 329 (402)
. |...+ =...+..|+++++|+++++||+|..++. ..+|+.++.+|+.|...++. + ..
T Consensus 230 h------g~~~~-------L~~~L~PLL~ky~VdlYisGHDH~lq~i-~~~gt~yIvSGaGs~~~~~~~~~~~~s~F~~~ 295 (394)
T PTZ00422 230 S------KGDSY-------LSYYLLPLLKDAQVDLYISGYDRNMEVL-TDEGTAHINCGSGGNSGRKSIMKNSKSLFYSE 295 (394)
T ss_pred C------CCCHH-------HHHHHHHHHHHcCcCEEEEccccceEEe-cCCCceEEEeCccccccCCCCCCCCCcceecC
Confidence 1 00000 1146788999999999999999985443 45788888777654322211 0 12
Q ss_pred CcceEEEEEee
Q 015684 330 ERRARVVVASL 340 (402)
Q Consensus 330 ~~g~rv~ei~~ 340 (402)
..|+-.++++.
T Consensus 296 ~~GF~~~~l~~ 306 (394)
T PTZ00422 296 DIGFCIHELNA 306 (394)
T ss_pred CCCEEEEEEec
Confidence 35677777663
No 18
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.4e-18 Score=150.85 Aligned_cols=218 Identities=20% Similarity=0.268 Sum_probs=125.9
Q ss_pred cCCCceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChh-----hHHHHH
Q 015684 39 RQNGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDAT-----DAAKSL 113 (402)
Q Consensus 39 ~~~~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~-----~~~~~~ 113 (402)
+++++++|+++.|......- ........|.++.++...||||-+||++++.|.. ...+.+
T Consensus 39 ~~dgslsflvvGDwGr~g~~---------------nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF 103 (336)
T KOG2679|consen 39 KSDGSLSFLVVGDWGRRGSF---------------NQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSENDPRFQDSF 103 (336)
T ss_pred CCCCceEEEEEcccccCCch---------------hHHHHHHHHHhHHHhccceEEEecCCcccccCCCCCCChhHHhhh
Confidence 36799999999999832211 1223334455555668999999999999998743 233334
Q ss_pred HHHHhHhHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHhcCCcccccCCCCCccccccccce----EEeccCCCCCCCCce
Q 015684 114 NAAFAPAIASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYN----LEIGGVKGSGFENKS 189 (402)
Q Consensus 114 ~~~l~~~~~~~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~----~~~~~~~~~~~~~~~ 189 (402)
..+...- .+..|||.|.||||..++.. .++...+.+... +++..-..|. ++....+
T Consensus 104 ~nIYT~p-SLQkpWy~vlGNHDyrGnV~-AQls~~l~~~d~----------RW~c~rsf~~~ae~ve~f~v~-------- 163 (336)
T KOG2679|consen 104 ENIYTAP-SLQKPWYSVLGNHDYRGNVE-AQLSPVLRKIDK----------RWICPRSFYVDAEIVEMFFVD-------- 163 (336)
T ss_pred hhcccCc-ccccchhhhccCccccCchh-hhhhHHHHhhcc----------ceecccHHhhcceeeeeeccc--------
Confidence 3333321 25679999999999987754 233333332211 1111111111 1111111
Q ss_pred eEEEEEEeCCCCCCCCCCCCCCC--------CCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccC
Q 015684 190 VLNLYFLDSGDYSTVPSVPGYGW--------IKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQ 261 (402)
Q Consensus 190 ~~~l~~lDs~~~~~~~~~~~~g~--------i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~ 261 (402)
...++.|+-. .+....++| +-..++.||+..|++. ..+++||+.|||+......
T Consensus 164 -~~~f~~d~~~---~~~~~~ydw~~v~PR~~~~~~~l~~le~~L~~S------------~a~wkiVvGHh~i~S~~~H-- 225 (336)
T KOG2679|consen 164 -TTPFMDDTFT---LCTDDVYDWRGVLPRVKYLRALLSWLEVALKAS------------RAKWKIVVGHHPIKSAGHH-- 225 (336)
T ss_pred -cccchhhhee---cccccccccccCChHHHHHHHHHHHHHHHHHHh------------hcceEEEecccceehhhcc--
Confidence 1122222211 111111222 3456788998886643 5679999999999653211
Q ss_pred CCcccccCCcCCCCCCChHHHHHHHHcCCeeEEEeccCCCCccccc-CCCeeEEecCCcc
Q 015684 262 SNFTGVRQEGISSASVNSGFFTTMVAAGDVKAVFTGHDHVNDFCGR-LTGIQLCYGGGFG 320 (402)
Q Consensus 262 ~~~~G~~~~~~~~~~~~~~~l~~l~~~~~v~~v~~GH~H~~~~~~~-~~gi~~~~~~~~g 320 (402)
|.-.+ =.+.+..+++..+|+++++||+|.-..... ..+|.++.+|+..
T Consensus 226 ----G~T~e-------L~~~LlPiL~~n~VdlY~nGHDHcLQhis~~e~~iqf~tSGagS 274 (336)
T KOG2679|consen 226 ----GPTKE-------LEKQLLPILEANGVDLYINGHDHCLQHISSPESGIQFVTSGAGS 274 (336)
T ss_pred ----CChHH-------HHHHHHHHHHhcCCcEEEecchhhhhhccCCCCCeeEEeeCCcc
Confidence 11111 114567788899999999999998655444 5788888766543
No 19
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.81 E-value=2.2e-18 Score=150.25 Aligned_cols=186 Identities=17% Similarity=0.214 Sum_probs=110.0
Q ss_pred EEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCC
Q 015684 46 ILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNI 125 (402)
Q Consensus 46 i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~i 125 (402)
|+++||+|.... .+.. ..+++.+||+||++|| +++.+....+..+ +.+ ...++
T Consensus 1 i~~~sD~H~~~~--------------------~~~~--~~~~~~~~D~vv~~GD-l~~~~~~~~~~~~-~~l---~~~~~ 53 (188)
T cd07392 1 ILAISDIHGDVE--------------------KLEA--IILKAEEADAVIVAGD-ITNFGGKEAAVEI-NLL---LAIGV 53 (188)
T ss_pred CEEEEecCCCHH--------------------HHHH--HHhhccCCCEEEECCC-ccCcCCHHHHHHH-HHH---HhcCC
Confidence 689999997531 1111 3456679999999999 6666555444444 333 34689
Q ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHhcCCcccccCCCCCccccccccceEEeccCCCCCCCCceeEEEEEEeCCCCCCCC
Q 015684 126 PWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDSGDYSTVP 205 (402)
Q Consensus 126 P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lDs~~~~~~~ 205 (402)
|+++|+||||... ..+... +.. .... +..+.+.+ +.++.+++.... +
T Consensus 54 p~~~v~GNHD~~~------~~~~~~----------~~~-~~~~---~~~~~~~~-----------~~~~g~~~~~~~--~ 100 (188)
T cd07392 54 PVLAVPGNCDTPE------ILGLLT----------SAG-LNLH---GKVVEVGG-----------YTFVGIGGSNPT--P 100 (188)
T ss_pred CEEEEcCCCCCHH------HHHhhh----------cCc-EecC---CCEEEECC-----------EEEEEeCCCCCC--C
Confidence 9999999999721 111110 000 0111 12233333 778888874211 1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccCCCcccccCCcCCCCCCChHHHHHH
Q 015684 206 SVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGFFTTM 285 (402)
Q Consensus 206 ~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~G~~~~~~~~~~~~~~~l~~l 285 (402)
. ...+.++++|++|+ +. +.. ...++.|+++|+|+... +..... . ....++..+..+
T Consensus 101 ~-~~~~~~~~~~l~~~-~~---l~~---------~~~~~~ilv~H~pp~~~---~~d~~~---~----~~~~g~~~l~~l 156 (188)
T cd07392 101 F-NTPIELSEEEIVSD-GR---LNN---------LLAKNLILVTHAPPYGT---AVDRVS---G----GFHVGSKAIRKF 156 (188)
T ss_pred C-CCccccCHHHHHHh-hh---hhc---------cCCCCeEEEECCCCcCC---cccccC---C----CCccCCHHHHHH
Confidence 1 12456788999998 22 222 25678999999988441 100000 0 011356778888
Q ss_pred HHcCCeeEEEeccCCCCcccccCCCeeEEe
Q 015684 286 VAAGDVKAVFTGHDHVNDFCGRLTGIQLCY 315 (402)
Q Consensus 286 ~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~ 315 (402)
+++.++++++|||+|......+.++++++.
T Consensus 157 i~~~~~~~~l~GH~H~~~~~~~~~~~~~~n 186 (188)
T cd07392 157 IEERQPLLCICGHIHESRGVDKIGNTLVVN 186 (188)
T ss_pred HHHhCCcEEEEeccccccceeeeCCeEEec
Confidence 888889999999999943233455654443
No 20
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.81 E-value=1.6e-18 Score=157.21 Aligned_cols=210 Identities=19% Similarity=0.183 Sum_probs=116.3
Q ss_pred EEeccCCcCCCCCCCCCCCccc-ccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhh-------HHHHHHHHHhH
Q 015684 48 QVADMHFANGKTTPCLDVLPSQ-VAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATD-------AAKSLNAAFAP 119 (402)
Q Consensus 48 ~iSDlH~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~-------~~~~~~~~l~~ 119 (402)
.++|.|+-......-+.+.-.. .....|.-..+....++...+||+||++||+ ++.+... +++.+.+++.+
T Consensus 2 ~vaDpql~~~~sy~~~~~~~~~~~~~~~D~ylr~~~~~~~~~l~PD~vv~lGDL-~d~G~~~~~~~~~~~~~rf~~i~~~ 80 (257)
T cd08163 2 LVADPQLVDDHTYPGRPWILNTLTEHFVDNYLRRNWRYMQKQLKPDSTIFLGDL-FDGGRDWADEYWKKEYNRFMRIFDP 80 (257)
T ss_pred cccCCccccCCccCCCchhhhhhhHHhhHHHHHHHHHHHHHhcCCCEEEEeccc-ccCCeeCcHHHHHHHHHHHHHHhcC
Confidence 4678887655332212221111 0111222223334445556799999999995 5555432 12333333332
Q ss_pred hHhCCCCEEEEcCCCCCCCCCC--HHHHHHHHHhcCCcccccCCCCCccccccccceEEeccCCCCCCCCceeEEEEEEe
Q 015684 120 AIASNIPWVAVLGNHDQESTLS--REGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLD 197 (402)
Q Consensus 120 ~~~~~iP~~~v~GNHD~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lD 197 (402)
. ...+|+++||||||...... ......+.+ ..|..+|.+.+++ +++++||
T Consensus 81 ~-~~~~pv~~VpGNHDig~~~~~~~~~~~rf~~----------------~Fg~~~~~~~~~~-----------~~fV~Ld 132 (257)
T cd08163 81 S-PGRKMVESLPGNHDIGFGNGVVLPVRQRFEK----------------YFGPTSRVIDVGN-----------HTFVILD 132 (257)
T ss_pred C-CccceEEEeCCCcccCCCCCCCHHHHHHHHH----------------HhCCCceEEEECC-----------EEEEEEc
Confidence 1 12479999999999843321 111111111 1122457777766 8899999
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccCCCcccccCC-------
Q 015684 198 SGDYSTVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQE------- 270 (402)
Q Consensus 198 s~~~~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~G~~~~------- 270 (402)
|..... ...+.+...|.+|+++.++.. ....++|+++|+|++..... . .|..+|
T Consensus 133 s~~l~~----~~~~~~~~~~~~~l~~~l~~~-----------~~~~p~ILl~H~Plyr~~~~---~-cg~~re~~~~~~~ 193 (257)
T cd08163 133 TISLSN----KDDPDVYQPPREFLHSFSAMK-----------VKSKPRILLTHVPLYRPPNT---S-CGPLRESKTPLPY 193 (257)
T ss_pred cccccC----CcccccchhHHHHHHhhhhcc-----------CCCCcEEEEeccccccCCCC---C-CCCccccCCCCCC
Confidence 964322 124567889999999876532 26689999999999763221 1 121111
Q ss_pred --cCCCC-CCChHHHHHHHHcCCeeEEEeccCCCCccccc
Q 015684 271 --GISSA-SVNSGFFTTMVAAGDVKAVFTGHDHVNDFCGR 307 (402)
Q Consensus 271 --~~~~~-~~~~~~l~~l~~~~~v~~v~~GH~H~~~~~~~ 307 (402)
+.... ....+.-+.|++.-++.+||+||+|. +|..
T Consensus 194 ~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~--~C~~ 231 (257)
T cd08163 194 GYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHD--YCEV 231 (257)
T ss_pred CCCccceeecCHHHHHHHHHhhCCcEEEecCCCc--ccee
Confidence 11111 12334455667776889999999996 6643
No 21
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.81 E-value=2.5e-18 Score=161.01 Aligned_cols=201 Identities=23% Similarity=0.289 Sum_probs=123.2
Q ss_pred eEEEEEeccCCcC-CCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHh
Q 015684 44 FKILQVADMHFAN-GKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIA 122 (402)
Q Consensus 44 ~~i~~iSDlH~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~ 122 (402)
++|+||||+|++. ... ....+..+.+.++..+||+||++|| +++.+....++.+.+.+.. ..
T Consensus 1 ~~i~~isD~H~~~~~~~---------------~~~~~~~~~~~i~~~~~D~~v~tGD-l~~~~~~~~~~~~~~~l~~-~~ 63 (301)
T COG1409 1 MRIAHISDLHLGALGVD---------------SEELLEALLAAIEQLKPDLLVVTGD-LTNDGEPEEYRRLKELLAR-LE 63 (301)
T ss_pred CeEEEEecCcccccccc---------------hHHHHHHHHHHHhcCCCCEEEEccC-cCCCCCHHHHHHHHHHHhh-cc
Confidence 6899999999995 211 2344455666666789999999999 7888888888888888872 23
Q ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHhcCCcccccCCCCCccccccccceEEeccCCCCCCCCceeEEEEEEeCCCCC
Q 015684 123 SNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDSGDYS 202 (402)
Q Consensus 123 ~~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lDs~~~~ 202 (402)
...|++++|||||.......... +. . .... .+....... ..++++.+||....
T Consensus 64 ~~~~~~~vpGNHD~~~~~~~~~~-~~----~-----~~~~---------~~~~~~~~~--------~~~~~~~~d~~~~~ 116 (301)
T COG1409 64 LPAPVIVVPGNHDARVVNGEAFS-DQ----F-----FNRY---------AVLVGACSS--------GGWRVIGLDSSVPG 116 (301)
T ss_pred CCCceEeeCCCCcCCchHHHHhh-hh----h-----cccC---------cceEeeccC--------CceEEEEecCCCCC
Confidence 67899999999998654332110 00 0 0000 011111000 12789999995332
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCC-CCeEEEEecChhhhhcccCCCcccccCCcCCCCCCChHH
Q 015684 203 TVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAP-APGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGF 281 (402)
Q Consensus 203 ~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~-~~~iv~~H~P~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 281 (402)
. ..|.+++.|++|+++.+++... .. ...+++.|||++..... ..... ..+...
T Consensus 117 ----~-~~G~~~~~q~~~l~~~l~~~~~----------~~~~~~v~~~hh~~~~~~~~-------~~~~~----l~~~~~ 170 (301)
T COG1409 117 ----V-PLGRLGAEQLDWLEEALAAAPE----------RAKDTVVVLHHHPLPSPGTG-------VDRVA----LRDAGE 170 (301)
T ss_pred ----C-CCCEECHHHHHHHHHHHHhCcc----------ccCceEEEecCCCCCCCCCc-------cceee----eecchh
Confidence 2 3678999999999999775432 11 13456666666432111 11111 123333
Q ss_pred HHHHHHcCC--eeEEEeccCCCCc-ccccCCCeeEE
Q 015684 282 FTTMVAAGD--VKAVFTGHDHVND-FCGRLTGIQLC 314 (402)
Q Consensus 282 l~~l~~~~~--v~~v~~GH~H~~~-~~~~~~gi~~~ 314 (402)
+..++.... ++++++||.|... ......+..+.
T Consensus 171 ~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~~~ 206 (301)
T COG1409 171 LLDVLIAHGNDVRLVLSGHIHLAAQTVYQLNGTRLS 206 (301)
T ss_pred HHHHHHhcCCceEEEEeCcccccccccceeCCeeee
Confidence 444444444 9999999999942 55556665555
No 22
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.74 E-value=9.1e-16 Score=135.59 Aligned_cols=196 Identities=15% Similarity=0.113 Sum_probs=113.0
Q ss_pred ceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCC-hhhHHHHHHHHHhHhH
Q 015684 43 EFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFD-ATDAAKSLNAAFAPAI 121 (402)
Q Consensus 43 ~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~-~~~~~~~~~~~l~~~~ 121 (402)
.+||+.+||+|- +...++.+.+.+++.++|+||++|| +++.+ ..+.+..+.+. +.
T Consensus 4 ~~kIl~iSDiHg--------------------n~~~le~l~~~~~~~~~D~vv~~GD-l~~~g~~~~~~~~~l~~---l~ 59 (224)
T cd07388 4 VRYVLATSNPKG--------------------DLEALEKLVGLAPETGADAIVLIGN-LLPKAAKSEDYAAFFRI---LG 59 (224)
T ss_pred eeEEEEEEecCC--------------------CHHHHHHHHHHHhhcCCCEEEECCC-CCCCCCCHHHHHHHHHH---HH
Confidence 579999999993 2234455666666679999999999 66655 34444444343 33
Q ss_pred hCCCCEEEEcCCCCCCCCCCHHHHHHHHHhcCCcccccCCCCCccccccccceEEeccCCCCCCCCceeEEEEEEeCCCC
Q 015684 122 ASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDSGDY 201 (402)
Q Consensus 122 ~~~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lDs~~~ 201 (402)
..++|+++|+||||.. . .+.+.+.+.. ....|.. ..+.+ .+ ..+.+ .++++.++...
T Consensus 60 ~l~~pv~~V~GNhD~~--v-~~~l~~~~~~-----~~~~p~~-~~lh~--~~-~~~~g----------~~~~~GlGGs~- 116 (224)
T cd07388 60 EAHLPTFYVPGPQDAP--L-WEYLREAYNA-----ELVHPEI-RNVHE--TF-AFWRG----------PYLVAGVGGEI- 116 (224)
T ss_pred hcCCceEEEcCCCChH--H-HHHHHHHhcc-----cccCccc-eecCC--Ce-EEecC----------CeEEEEecCCc-
Confidence 4678999999999962 0 1111111100 0000111 11221 11 11111 15688888531
Q ss_pred CCCCCCCCCCCCCHHHH----HHH-HHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccCCCcccccCCcCCCCC
Q 015684 202 STVPSVPGYGWIKPSQQ----FWF-EQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSAS 276 (402)
Q Consensus 202 ~~~~~~~~~g~i~~~q~----~Wl-~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~G~~~~~~~~~~ 276 (402)
+. ....+++++ +|+ +..++.+.+. ...+.|+++|+|++... . ..
T Consensus 117 ---~~---~~e~sE~e~~~~~~~~~~~~l~~~~~~---------~~~~~VLv~H~PP~g~g---------~-------~h 165 (224)
T cd07388 117 ---AD---EGEPEEHEALRYPAWVAEYRLKALWEL---------KDYRKVFLFHTPPYHKG---------L-------NE 165 (224)
T ss_pred ---CC---CCCcCHHHHhhhhhhHHHHHHHHHHhC---------CCCCeEEEECCCCCCCC---------C-------Cc
Confidence 11 123466663 675 4444444431 45689999999996531 0 01
Q ss_pred CChHHHHHHHHcCCeeEEEeccCCCCcccccCCCeeEEecCCc
Q 015684 277 VNSGFFTTMVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYGGGF 319 (402)
Q Consensus 277 ~~~~~l~~l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~ 319 (402)
.++..+..++++++.++++|||+|. -.. .. |-+++.++++
T Consensus 166 ~GS~alr~~I~~~~P~l~i~GHih~-~~~-~~-g~t~vvNpg~ 205 (224)
T cd07388 166 QGSHEVAHLIKTHNPLVVLVGGKGQ-KHE-LL-GASWVVVPGD 205 (224)
T ss_pred cCHHHHHHHHHHhCCCEEEEcCCce-eEE-Ee-CCEEEECCCc
Confidence 4778889999999999999999994 222 33 4445555544
No 23
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.72 E-value=8.3e-17 Score=134.12 Aligned_cols=80 Identities=29% Similarity=0.368 Sum_probs=56.0
Q ss_pred EEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCC
Q 015684 46 ILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNI 125 (402)
Q Consensus 46 i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~i 125 (402)
|+|+||+|++........ .....++.+.+.+++.+||+|+++|| +.+.+....++.+.+.++.+....+
T Consensus 1 il~isD~Hl~~~~~~~~~----------~~~~~l~~~~~~~~~~~~d~vi~~GD-l~~~~~~~~~~~~~~~~~~l~~~~~ 69 (144)
T cd07400 1 ILHLSDLHFGPERKPELL----------ALLSLLDRLLAEIKALDPDLVVITGD-LTQRGLPEEFEEAREFLDALPAPLE 69 (144)
T ss_pred CeEeCccCCCCCcchhHH----------HHHHHHHHHHHHHhccCCCEEEECCC-CCCCCCHHHHHHHHHHHHHccccCC
Confidence 689999999875432100 01111344566677789999999999 5556666667777777877654446
Q ss_pred CEEEEcCCCCC
Q 015684 126 PWVAVLGNHDQ 136 (402)
Q Consensus 126 P~~~v~GNHD~ 136 (402)
|+++++||||.
T Consensus 70 ~~~~v~GNHD~ 80 (144)
T cd07400 70 PVLVVPGNHDV 80 (144)
T ss_pred cEEEeCCCCeE
Confidence 99999999995
No 24
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.70 E-value=1.6e-16 Score=142.36 Aligned_cols=90 Identities=23% Similarity=0.299 Sum_probs=58.8
Q ss_pred EEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCC-hhhHHHHHHHHHhHhHhC
Q 015684 45 KILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFD-ATDAAKSLNAAFAPAIAS 123 (402)
Q Consensus 45 ~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~-~~~~~~~~~~~l~~~~~~ 123 (402)
||+|+||+|++......... .+ ......+++.+.+.+.+.+||+||++||++.... .......+.+.+..+...
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRD---RR--REDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEA 75 (223)
T ss_pred CeEEeccccCCccccCcCcc---cc--hHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHC
Confidence 68999999999654321100 00 0012345566666667789999999999554432 223445566666665446
Q ss_pred CCCEEEEcCCCCCCCC
Q 015684 124 NIPWVAVLGNHDQEST 139 (402)
Q Consensus 124 ~iP~~~v~GNHD~~~~ 139 (402)
++|+++++||||....
T Consensus 76 ~~~v~~~~GNHD~~~~ 91 (223)
T cd00840 76 GIPVFIIAGNHDSPSR 91 (223)
T ss_pred CCCEEEecCCCCCccc
Confidence 8999999999998654
No 25
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.70 E-value=2.5e-15 Score=141.98 Aligned_cols=132 Identities=18% Similarity=0.213 Sum_probs=72.1
Q ss_pred EEEEEEeCCCCCCC---CCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEE-EecChhhhhcccCCCccc
Q 015684 191 LNLYFLDSGDYSTV---PSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVY-FHIPLPEFAYFDQSNFTG 266 (402)
Q Consensus 191 ~~l~~lDs~~~~~~---~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~-~H~P~~~~~~~~~~~~~G 266 (402)
+++++|||..+... ++ ...|.++++|++||+++|++.. ...+.+++ .|+|+.............
T Consensus 305 lrvIvLDSt~~~~~~s~pG-~~~G~Ld~eQLaWLe~~La~a~-----------a~~p~VVV~hHpPi~t~gi~~md~w~~ 372 (492)
T TIGR03768 305 LKVIVLDDTQSEHDGSHDI-HGHGSLDAKRWDWLKAELARGQ-----------ADGQLMIIAAHIPIAVSPIGSEMEWWL 372 (492)
T ss_pred eEEEEECCCccccccCCCC-CcceeeCHHHHHHHHHHHHhCc-----------CCCceEEEEeCCCcccCCccchhhhcc
Confidence 59999999754432 12 2468899999999999987543 24455555 555664311100000000
Q ss_pred -c--cCCcCCCCCCChHHHHHHHHcCCeeEEEeccCCCCcccccC---------CCeeEEecCCccCCCCCCCCCCcceE
Q 015684 267 -V--RQEGISSASVNSGFFTTMVAAGDVKAVFTGHDHVNDFCGRL---------TGIQLCYGGGFGYHAYGKAGWERRAR 334 (402)
Q Consensus 267 -~--~~~~~~~~~~~~~~l~~l~~~~~v~~v~~GH~H~~~~~~~~---------~gi~~~~~~~~g~~~y~~~~~~~g~r 334 (402)
. ..+.+.......++++.|.++++|.++||||.|.+- ...+ .|.|-+-..| ..+|+.-+|
T Consensus 373 ~~~~~~~~L~n~~~~~eLlaLL~~hPnVla~LsGHvHrn~-v~a~~~p~~~~pe~gFWeveTaS-------l~DfPQq~R 444 (492)
T TIGR03768 373 GAADANPDLQNAVSLTGLVTTLQKYPNLLMWIAGHRHLNT-VKAFPSPDPARPEYGFWQVETAS-------LRDFPQQFR 444 (492)
T ss_pred ccccccccccccccHHHHHHHHhcCCCeEEEEcCCccccc-ccccCCCCCCCCcCceEEEeehh-------hccchhhce
Confidence 0 001111111112444444444589999999999853 3221 2344332221 235777899
Q ss_pred EEEEeecc
Q 015684 335 VVVASLEK 342 (402)
Q Consensus 335 v~ei~~~~ 342 (402)
+|||-.+.
T Consensus 445 ~~Ei~~n~ 452 (492)
T TIGR03768 445 TFEIYLNS 452 (492)
T ss_pred EEEEEeCC
Confidence 99998653
No 26
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.70 E-value=4.2e-17 Score=139.72 Aligned_cols=79 Identities=27% Similarity=0.412 Sum_probs=51.5
Q ss_pred eEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhC
Q 015684 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIAS 123 (402)
Q Consensus 44 ~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~ 123 (402)
|||+++||+|++.... .. ....+.......+||+||++||++......................
T Consensus 1 ~ri~~isD~H~~~~~~---------------~~-~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~ 64 (200)
T PF00149_consen 1 MRILVISDLHGGYDDD---------------SD-AFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNP 64 (200)
T ss_dssp EEEEEEEBBTTTHHHH---------------CH-HHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEcCCCCCCcch---------------hH-HHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhc
Confidence 7999999999875321 01 2345556666789999999999655554333222221123334457
Q ss_pred CCCEEEEcCCCCCCC
Q 015684 124 NIPWVAVLGNHDQES 138 (402)
Q Consensus 124 ~iP~~~v~GNHD~~~ 138 (402)
.+|+++++||||...
T Consensus 65 ~~~~~~~~GNHD~~~ 79 (200)
T PF00149_consen 65 KIPVYFILGNHDYYS 79 (200)
T ss_dssp TTTEEEEE-TTSSHH
T ss_pred cccccccccccccce
Confidence 999999999999953
No 27
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.70 E-value=3e-15 Score=137.77 Aligned_cols=80 Identities=28% Similarity=0.371 Sum_probs=54.6
Q ss_pred CceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhH
Q 015684 42 GEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAI 121 (402)
Q Consensus 42 ~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~ 121 (402)
.++||+++||+|++... ....++.+.+.+++.+||+|+++||++... .....+.+.+.++.+.
T Consensus 48 ~~~rI~~lSDlH~~~~~----------------~~~~l~~~v~~i~~~~pDlVli~GD~~d~~-~~~~~~~~~~~L~~L~ 110 (271)
T PRK11340 48 APFKILFLADLHYSRFV----------------PLSLISDAIALGIEQKPDLILLGGDYVLFD-MPLNFSAFSDVLSPLA 110 (271)
T ss_pred CCcEEEEEcccCCCCcC----------------CHHHHHHHHHHHHhcCCCEEEEccCcCCCC-ccccHHHHHHHHHHHh
Confidence 46999999999986432 112335556667788999999999965422 2222334555666554
Q ss_pred hCCCCEEEEcCCCCCCCC
Q 015684 122 ASNIPWVAVLGNHDQEST 139 (402)
Q Consensus 122 ~~~iP~~~v~GNHD~~~~ 139 (402)
. ..|+++|+||||....
T Consensus 111 ~-~~pv~~V~GNHD~~~~ 127 (271)
T PRK11340 111 E-CAPTFACFGNHDRPVG 127 (271)
T ss_pred h-cCCEEEecCCCCcccC
Confidence 3 4799999999998643
No 28
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.68 E-value=1.9e-16 Score=135.26 Aligned_cols=68 Identities=16% Similarity=0.206 Sum_probs=42.1
Q ss_pred CCCeEEEEecChhhhhcccCCCcccccCCcCCCCCCChHHHHHHHHcCCeeEEEeccCCCCcccccCCCeeEEecC
Q 015684 242 PAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGFFTTMVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYGG 317 (402)
Q Consensus 242 ~~~~iv~~H~P~~~~~~~~~~~~~G~~~~~~~~~~~~~~~l~~l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~~ 317 (402)
.+++|+++|||+......+.. ...... ......+..++++++|++++|||+|.+ .....+|+.++.++
T Consensus 96 ~~~~vv~~HhpP~~~~~~~~~------~~~~~~-~~~~~~l~~~~~~~~v~~~i~GH~H~~-~~~~~~g~~~~~np 163 (166)
T cd07404 96 RGKTVVVTHHAPSPLSLAPQY------GDSLVN-AAFAVDLDDLILADPIDLWIHGHTHFN-FDYRIGGTRVLSNQ 163 (166)
T ss_pred CCCEEEEeCCCCCccccCccc------cCCCcc-hhhhhccHhHHhhcCCCEEEECCcccc-ceEEECCEEEEecC
Confidence 368999999987542222210 000000 011233556667788999999999995 56678888876554
No 29
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=99.59 E-value=1e-13 Score=132.84 Aligned_cols=89 Identities=22% Similarity=0.342 Sum_probs=57.0
Q ss_pred CceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhh--HHHHHHHHHhH
Q 015684 42 GEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATD--AAKSLNAAFAP 119 (402)
Q Consensus 42 ~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~--~~~~~~~~l~~ 119 (402)
+.|||+|+||+|+|.......+.. ...++++.+.+.+.+++||+||++|| +++.+.+. ....+.+.+..
T Consensus 2 ~~mKIlh~SD~HlG~~~~~~~r~~--------D~~~~f~eil~~a~~~~vD~VLiaGD-LFd~~~Ps~~~~~~~~~~lr~ 72 (405)
T TIGR00583 2 DTIRILVSTDNHVGYGENDPVRGD--------DSWNTFEEVLQIAKEQDVDMILLGGD-LFHENKPSRKSLYQVLRSLRL 72 (405)
T ss_pred CceEEEEEcCCCCCCccCCchhhh--------hHHHHHHHHHHHHHHcCCCEEEECCc-cCCCCCCCHHHHHHHHHHHHH
Confidence 579999999999985432211100 01345566667777889999999999 66665443 22222233332
Q ss_pred ------------hH---------------------hCCCCEEEEcCCCCCCCC
Q 015684 120 ------------AI---------------------ASNIPWVAVLGNHDQEST 139 (402)
Q Consensus 120 ------------~~---------------------~~~iP~~~v~GNHD~~~~ 139 (402)
+. +.++|++++.||||....
T Consensus 73 ~~~g~~p~~~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~~ 125 (405)
T TIGR00583 73 YCLGDKPCELEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPSG 125 (405)
T ss_pred hhccCCccchhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCccc
Confidence 00 147999999999998654
No 30
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=99.59 E-value=1.3e-13 Score=133.32 Aligned_cols=293 Identities=19% Similarity=0.203 Sum_probs=158.9
Q ss_pred cCCCceEEEEEeccCCcCCC----CCCC------CCC--Cc-------cccc---CC-CChhHHHHHHHHHHh--cCCCE
Q 015684 39 RQNGEFKILQVADMHFANGK----TTPC------LDV--LP-------SQVA---GC-SDLNTTAFINRMISA--EKPDL 93 (402)
Q Consensus 39 ~~~~~~~i~~iSDlH~~~~~----~~~~------~~~--~~-------~~~~---~~-~~~~~~~~l~~~i~~--~~pD~ 93 (402)
.++-.+||+|++|+|.+... ...| ++. .| .-++ .| ....+++.+.+.+++ .++|+
T Consensus 134 ~~~p~~rvlhltDiH~D~~Y~~gs~a~c~~p~ccr~s~~~p~~~~~~Ag~wG~y~~CD~P~~lies~L~~ike~~~~iD~ 213 (577)
T KOG3770|consen 134 KNNPTFRVLHLTDIHLDPDYSEGSDADCDCPMCCRNSDGTPSGTKVAAGPWGDYGKCDSPKRLIESALDHIKENHKDIDY 213 (577)
T ss_pred CCCCceeEEEeeccccCcccccCCcccccCccccccCCCCCCCccccCCCCCCcCCCCCCHHHHHHHHHHHHhcCCCCCE
Confidence 33456999999999998332 1111 111 01 1122 23 445666666666665 24899
Q ss_pred EEEcCCccCCCChhhH----HHHHHHHHhHhHh--CCCCEEEEcCCCCCCCC-------CC-H---HHHHH-HHHhcCCc
Q 015684 94 IVFTGDNIFGFDATDA----AKSLNAAFAPAIA--SNIPWVAVLGNHDQEST-------LS-R---EGVMK-HIVTLKNT 155 (402)
Q Consensus 94 vv~~GDli~~~~~~~~----~~~~~~~l~~~~~--~~iP~~~v~GNHD~~~~-------~~-~---~~~~~-~~~~~~~~ 155 (402)
|++|||++........ .+.+.+..+.+.+ .++|+|...||||.... .. . .-+.+ ....+
T Consensus 214 I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P~N~F~~~~~~~~~~~~wly~~~~~~W--- 290 (577)
T KOG3770|consen 214 IIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHPVNLFAPGSVPKRHSQLWLYKHLAGAW--- 290 (577)
T ss_pred EEEeCCCCcccchhhhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCCCcHhhcCCCCCcchhhhhHHHHHHHhhh---
Confidence 9999997766633221 1222222222222 58999999999998531 00 1 00111 11111
Q ss_pred ccccCCCCCcc-ccccccceEEeccCCCCCCCCceeEEEEEEeCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHhhc
Q 015684 156 LSQVNPSDAHI-IDGFGNYNLEIGGVKGSGFENKSVLNLYFLDSGDYSTVPSV-PGYGWIKPSQQFWFEQTSARLQRAYM 233 (402)
Q Consensus 156 ~~~~~p~~~~~-~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lDs~~~~~~~~~-~~~g~i~~~q~~Wl~~~l~~l~~~~~ 233 (402)
..+-|.+... +..-+.|...+.+ | ++++.||+..-...+.. .....-...|++||..+|++++.
T Consensus 291 -~~wlp~e~~~t~~kga~Y~~~~~~--G--------lr~IslNt~~c~~~N~~L~~n~tdp~~~lqWf~~~L~~ae~--- 356 (577)
T KOG3770|consen 291 -STWLPAEAKETFLKGAYYLVLVID--G--------LRLISLNTNYCSAPNFWLYANQTDPIDQLQWFVDQLQEAES--- 356 (577)
T ss_pred -hccCCHHHHhhhhcCcEEEEeecC--C--------ceEEEeccccccccceeeeecCCCchHHhhHHHHHHHHHHh---
Confidence 1222322111 2212445544432 2 88999999643222211 12223456789999999998875
Q ss_pred CCccccCCCCCeEEEEecChhhhhcccCCCcccccCCcCCCCCCChHHHHHHHHcC-CeeEEEeccCCCCcccccCCC--
Q 015684 234 SKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGFFTTMVAAG-DVKAVFTGHDHVNDFCGRLTG-- 310 (402)
Q Consensus 234 ~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~G~~~~~~~~~~~~~~~l~~l~~~~-~v~~v~~GH~H~~~~~~~~~g-- 310 (402)
++..+-++.|+|+... ...++. ...+...+-+.. -+...|.||.|.+.+...++.
T Consensus 357 -------~GekVhil~HIPpG~~----------~c~~~w-----s~~f~~iv~r~~~tI~gqf~GH~h~d~f~v~yde~~ 414 (577)
T KOG3770|consen 357 -------AGEKVHILGHIPPGDG----------VCLEGW-----SINFYRIVNRFRSTIAGQFYGHTHIDEFRVFYDEET 414 (577)
T ss_pred -------cCCEEEEEEeeCCCCc----------chhhhh-----hHHHHHHHHHHHHhhhhhccccCcceeEEEEecccc
Confidence 7888999999998531 111111 112233332222 467899999999766544422
Q ss_pred -eeEE--ecCCccCCCCCCCCCCcceEEEEEeeccccccCCCcccceEEEEEcCCCCCCcccceeeeecCCC
Q 015684 311 -IQLC--YGGGFGYHAYGKAGWERRARVVVASLEKTEKRGWGDVKSIKTWKRLDDEHLTGVDGHVLWSKTSS 379 (402)
Q Consensus 311 -i~~~--~~~~~g~~~y~~~~~~~g~rv~ei~~~~~~~~~~~~~~~~~tw~r~~~~~~~~~d~~~~~~~~~~ 379 (402)
..+. +.++ +...|.+ -.+|+|+++++... ++ ...++.||.++-....... ++.-|+..+.
T Consensus 415 ~~p~~v~~i~~-svtty~~--~~p~yr~y~~~~~~----~~-~~~d~~ty~~Nlt~an~~~-e~p~W~~~y~ 477 (577)
T KOG3770|consen 415 GHPIAVAYIGP-SVTTYYN--KNPGYRIYAVDSTI----SF-SVPDHRTYFYNLTSANLQP-ESPEWELLYT 477 (577)
T ss_pred CCceeeeeccc-cceehhc--cCCCceecccCccc----ce-ecccceEEEEehhhhcCCC-CCCchHhhhh
Confidence 2221 2211 2223332 36899999998221 11 1567899998765443233 7788888775
No 31
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.59 E-value=2.9e-14 Score=127.83 Aligned_cols=80 Identities=29% Similarity=0.304 Sum_probs=55.2
Q ss_pred ceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHh
Q 015684 43 EFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIA 122 (402)
Q Consensus 43 ~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~ 122 (402)
.|||+++||+|++.... ...++.+.+.+++.+||+|+++||++.... ... +.+.+.++.+ .
T Consensus 1 ~~~i~~~sDlH~~~~~~----------------~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~-~~~-~~~~~~l~~l-~ 61 (223)
T cd07385 1 GLRIAHLSDLHLGPFVS----------------RERLERLVEKINALKPDLVVLTGDLVDGSV-DVL-ELLLELLKKL-K 61 (223)
T ss_pred CCEEEEEeecCCCccCC----------------HHHHHHHHHHHhccCCCEEEEcCcccCCcc-hhh-HHHHHHHhcc-C
Confidence 48999999999975431 223455666677789999999999554433 222 3444555543 2
Q ss_pred CCCCEEEEcCCCCCCCCCC
Q 015684 123 SNIPWVAVLGNHDQESTLS 141 (402)
Q Consensus 123 ~~iP~~~v~GNHD~~~~~~ 141 (402)
..+|+++++||||......
T Consensus 62 ~~~~v~~v~GNHD~~~~~~ 80 (223)
T cd07385 62 APLGVYAVLGNHDYYSGDE 80 (223)
T ss_pred CCCCEEEECCCcccccCch
Confidence 4689999999999866543
No 32
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=99.56 E-value=2.6e-13 Score=131.18 Aligned_cols=86 Identities=20% Similarity=0.297 Sum_probs=57.6
Q ss_pred eEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhHH--HHHHHHHhHhH
Q 015684 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAA--KSLNAAFAPAI 121 (402)
Q Consensus 44 ~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~--~~~~~~l~~~~ 121 (402)
|||+|+||+|+|....+..+. . .....++.+.+.+.+++||+||++|| +++...+..+ ..+.+++..+.
T Consensus 1 mkilh~SDlHlG~~~~~~~~~------~--~~~~~l~~l~~~i~~~~~D~viIaGD-ifD~~~p~~~a~~~~~~~l~~L~ 71 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRA------A--EHQAFLDWLLEQVQEHQVDAIIVAGD-IFDTGSPPSYARELYNRFVVNLQ 71 (407)
T ss_pred CEEEEEcccCCCCcccCcccH------H--HHHHHHHHHHHHHHhcCCCEEEECCc-cccCCCCcHHHHHHHHHHHHHHH
Confidence 799999999998543211000 0 01123456777777899999999999 5655443322 33455666666
Q ss_pred hCCCCEEEEcCCCCCCC
Q 015684 122 ASNIPWVAVLGNHDQES 138 (402)
Q Consensus 122 ~~~iP~~~v~GNHD~~~ 138 (402)
..++|+++|+||||...
T Consensus 72 ~~~~~v~~I~GNHD~~~ 88 (407)
T PRK10966 72 QTGCQLVVLAGNHDSVA 88 (407)
T ss_pred hcCCcEEEEcCCCCChh
Confidence 67899999999999854
No 33
>PHA02546 47 endonuclease subunit; Provisional
Probab=99.55 E-value=7.6e-13 Score=125.62 Aligned_cols=86 Identities=21% Similarity=0.209 Sum_probs=55.0
Q ss_pred eEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChh--hHHHHHHH-HHhHh
Q 015684 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDAT--DAAKSLNA-AFAPA 120 (402)
Q Consensus 44 ~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~--~~~~~~~~-~l~~~ 120 (402)
|||+|+||+|+|...... +... .....++.+.+.+.+++||+|+++||++...... .....+.+ ++..+
T Consensus 1 MKilhiSD~HLG~~~~~~---~~~~-----~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L 72 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDP---WFQN-----YQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLL 72 (340)
T ss_pred CeEEEEeeecCCCcCCCh---hhHH-----HHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHH
Confidence 799999999999643211 0000 0123456666667789999999999954432222 22223333 34445
Q ss_pred HhCCCCEEEEcCCCCCC
Q 015684 121 IASNIPWVAVLGNHDQE 137 (402)
Q Consensus 121 ~~~~iP~~~v~GNHD~~ 137 (402)
.+.++|+++++||||..
T Consensus 73 ~~~gi~v~~I~GNHD~~ 89 (340)
T PHA02546 73 KEAGITLHVLVGNHDMY 89 (340)
T ss_pred HHCCCeEEEEccCCCcc
Confidence 55789999999999974
No 34
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.55 E-value=3.5e-12 Score=109.62 Aligned_cols=211 Identities=21% Similarity=0.211 Sum_probs=120.4
Q ss_pred CceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccC--CCChhhHHHHHHHHHhH
Q 015684 42 GEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIF--GFDATDAAKSLNAAFAP 119 (402)
Q Consensus 42 ~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~--~~~~~~~~~~~~~~l~~ 119 (402)
..||++++||+|-+.. .++.+..++...++|+++++|| ++ ..+......... .+.+
T Consensus 2 ~~mkil~vtDlHg~~~--------------------~~~k~~~~~~~~~~D~lviaGD-lt~~~~~~~~~~~~~~-~~e~ 59 (226)
T COG2129 2 KKMKILAVTDLHGSED--------------------SLKKLLNAAADIRADLLVIAGD-LTYFHFGPKEVAEELN-KLEA 59 (226)
T ss_pred CcceEEEEeccccchH--------------------HHHHHHHHHhhccCCEEEEecc-eehhhcCchHHHHhhh-HHHH
Confidence 3689999999996532 2355666666779999999999 55 444333222211 1455
Q ss_pred hHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHhcCCcccccCCCCCccccccccceEEeccCCCCCCCCceeEEEEEEeCC
Q 015684 120 AIASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDSG 199 (402)
Q Consensus 120 ~~~~~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lDs~ 199 (402)
+...++|++++|||=|- .++...+....-. +.+ -...+++ ..+..+--
T Consensus 60 l~~~~~~v~avpGNcD~------~~v~~~l~~~~~~-----------v~~---~v~~i~~-----------~~~~G~Gg- 107 (226)
T COG2129 60 LKELGIPVLAVPGNCDP------PEVIDVLKNAGVN-----------VHG---RVVEIGG-----------YGFVGFGG- 107 (226)
T ss_pred HHhcCCeEEEEcCCCCh------HHHHHHHHhcccc-----------ccc---ceEEecC-----------cEEEEecc-
Confidence 55689999999999775 2233333221110 111 1112221 22222111
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCe-EEEEecChhhhhcccCCCcccccCCcCCCCCCC
Q 015684 200 DYSTVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPG-LVYFHIPLPEFAYFDQSNFTGVRQEGISSASVN 278 (402)
Q Consensus 200 ~~~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~-iv~~H~P~~~~~~~~~~~~~G~~~~~~~~~~~~ 278 (402)
+.......+..+++++ +...++.+-+. ...+. |+.+|.|++..... ...| ....+
T Consensus 108 --sn~tp~nt~~e~~E~~---I~s~l~~~v~~---------~~~~~~Il~~HaPP~gt~~d---~~~g-------~~hvG 163 (226)
T COG2129 108 --SNPTPFNTPREFSEDE---IYSKLKSLVKK---------ADNPVNILLTHAPPYGTLLD---TPSG-------YVHVG 163 (226)
T ss_pred --cCCCCCCCccccCHHH---HHHHHHHHHhc---------ccCcceEEEecCCCCCcccc---CCCC-------ccccc
Confidence 0111111234466665 34443333321 21222 99999998764322 1111 12357
Q ss_pred hHHHHHHHHcCCeeEEEeccCCCCcccccCCCeeEEecCCccCCCCCCCCCCcceEEEEEe
Q 015684 279 SGFFTTMVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYHAYGKAGWERRARVVVAS 339 (402)
Q Consensus 279 ~~~l~~l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~~y~~~~~~~g~rv~ei~ 339 (402)
+..++.++++.++.+.+|||+|. +.....-|-+++.+|++-. ..+|-+++++
T Consensus 164 S~~vr~~ieefqP~l~i~GHIHE-s~G~d~iG~TivVNPG~~~--------~g~yA~i~l~ 215 (226)
T COG2129 164 SKAVRKLIEEFQPLLGLHGHIHE-SRGIDKIGNTIVVNPGPLG--------EGRYALIELE 215 (226)
T ss_pred hHHHHHHHHHhCCceEEEeeecc-cccccccCCeEEECCCCcc--------CceEEEEEec
Confidence 78899999999999999999998 5555666667777766511 2346677776
No 35
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.52 E-value=2.4e-13 Score=123.61 Aligned_cols=86 Identities=26% Similarity=0.346 Sum_probs=58.7
Q ss_pred eEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhh--HHHHHHHHHhHhH
Q 015684 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATD--AAKSLNAAFAPAI 121 (402)
Q Consensus 44 ~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~--~~~~~~~~l~~~~ 121 (402)
|||+|+||+|++.......+. . .....++.+.+.+.+++||+|+++|| +++...+. ....+.+.+..+.
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~--~------~~~~~l~~l~~~~~~~~~D~lli~GD-i~d~~~p~~~~~~~~~~~l~~l~ 71 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRL--A------EQKAFLDDLLEFAKAEQIDALLVAGD-VFDTANPPAEAQELFNAFFRNLS 71 (253)
T ss_pred CEEEEEhhhcCCCccCCCChH--H------HHHHHHHHHHHHHHHcCCCEEEECCc-cCCCCCCCHHHHHHHHHHHHHHH
Confidence 799999999998654221100 0 01234566667777889999999999 55554433 2334556777666
Q ss_pred hCC-CCEEEEcCCCCCCC
Q 015684 122 ASN-IPWVAVLGNHDQES 138 (402)
Q Consensus 122 ~~~-iP~~~v~GNHD~~~ 138 (402)
+.+ +|+++++||||...
T Consensus 72 ~~~~i~v~~i~GNHD~~~ 89 (253)
T TIGR00619 72 DANPIPIVVISGNHDSAQ 89 (253)
T ss_pred hcCCceEEEEccCCCChh
Confidence 666 99999999999854
No 36
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=99.49 E-value=8.1e-13 Score=112.97 Aligned_cols=74 Identities=26% Similarity=0.348 Sum_probs=48.0
Q ss_pred eEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHH------------
Q 015684 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAK------------ 111 (402)
Q Consensus 44 ~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~------------ 111 (402)
=||+.+||+|- +.+.+..+..++.+.+||+|+++||++-.....+.|.
T Consensus 6 ~kilA~s~~~g--------------------~~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~ 65 (255)
T PF14582_consen 6 RKILAISNFRG--------------------DFELLERLVEVIPEKGPDAVVFVGDLLKAEARSDEYERAQEEQREPDKS 65 (255)
T ss_dssp -EEEEEE--TT---------------------HHHHHHHHHHHHHHT-SEEEEES-SS-TCHHHHHHHHHHHTT----TH
T ss_pred hhheeecCcch--------------------HHHHHHHHHhhccccCCCEEEEeccccccchhhhHHHHHhhhccCcchh
Confidence 38899999993 4567788888898899999999999665554444443
Q ss_pred -----------HHHHHHhHhHhCCCCEEEEcCCCCCC
Q 015684 112 -----------SLNAAFAPAIASNIPWVAVLGNHDQE 137 (402)
Q Consensus 112 -----------~~~~~l~~~~~~~iP~~~v~GNHD~~ 137 (402)
.+.+++..+...++|+++||||||..
T Consensus 66 ~i~~e~~~~~e~~~~ff~~L~~~~~p~~~vPG~~Dap 102 (255)
T PF14582_consen 66 EINEEECYDSEALDKFFRILGELGVPVFVVPGNMDAP 102 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC-SEEEEE--TTS-S
T ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCcEEEecCCCCch
Confidence 34466666667899999999999973
No 37
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.48 E-value=2.7e-12 Score=113.69 Aligned_cols=66 Identities=24% Similarity=0.269 Sum_probs=44.3
Q ss_pred eEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhC
Q 015684 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIAS 123 (402)
Q Consensus 44 ~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~ 123 (402)
+||+++||+|..... ...+.++..+||+|+++||+. +.. . +.++.+...
T Consensus 1 ~rIa~isDiHg~~~~----------------------~~~~~l~~~~pD~Vl~~GDi~-~~~----~----~~~~~l~~l 49 (238)
T cd07397 1 LRIAIVGDVHGQWDL----------------------EDIKALHLLQPDLVLFVGDFG-NES----V----QLVRAISSL 49 (238)
T ss_pred CEEEEEecCCCCchH----------------------HHHHHHhccCCCEEEECCCCC-cCh----H----HHHHHHHhC
Confidence 589999999953210 112355667999999999954 321 1 233333345
Q ss_pred CCCEEEEcCCCCCCCCC
Q 015684 124 NIPWVAVLGNHDQESTL 140 (402)
Q Consensus 124 ~iP~~~v~GNHD~~~~~ 140 (402)
..|+++++||||.....
T Consensus 50 ~~p~~~V~GNHD~~~~~ 66 (238)
T cd07397 50 PLPKAVILGNHDAWYDA 66 (238)
T ss_pred CCCeEEEcCCCcccccc
Confidence 68999999999986643
No 38
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=99.47 E-value=6.7e-13 Score=111.56 Aligned_cols=83 Identities=18% Similarity=0.261 Sum_probs=48.7
Q ss_pred EEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhh---HHHHHHHHHhHhHh-
Q 015684 47 LQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATD---AAKSLNAAFAPAIA- 122 (402)
Q Consensus 47 ~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~---~~~~~~~~l~~~~~- 122 (402)
+++||+|++....... .+ .. ..+....+.+.++++..+||+||++||++ +.+... .+..+...+..+..
T Consensus 1 ~~isD~HL~~~~~~~~---l~-~~--~~~~~~~~~~~~~i~~~~pd~vv~~GDl~-~~~~~~~~~~~~~~~~~~~~~~~~ 73 (156)
T cd08165 1 MFLADTHLLGSILGHW---LD-KL--RREWQMERSFQTSLWLLQPDVVFVLGDLF-DEGKWSTDEEWEDYVERFKKMFGH 73 (156)
T ss_pred CccccchhcCCcccHH---HH-HH--hhhHHHHHHHHHHHHhcCCCEEEECCCCC-CCCccCCHHHHHHHHHHHHHHhcc
Confidence 4689999964332111 00 00 01233445677888889999999999955 443322 22222222222222
Q ss_pred -CCCCEEEEcCCCCC
Q 015684 123 -SNIPWVAVLGNHDQ 136 (402)
Q Consensus 123 -~~iP~~~v~GNHD~ 136 (402)
.++|+++++||||.
T Consensus 74 ~~~~~i~~v~GNHD~ 88 (156)
T cd08165 74 PPDLPLHVVVGNHDI 88 (156)
T ss_pred CCCCeEEEEcCCCCc
Confidence 36899999999997
No 39
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.45 E-value=2.9e-12 Score=108.03 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=51.5
Q ss_pred CCeEEEEecChhhhhcccCCCcccccCCcCCCCCCChHHHHHHHHcCCeeEEEeccCCCCcccccCCCeeEEecCCccCC
Q 015684 243 APGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGFFTTMVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYH 322 (402)
Q Consensus 243 ~~~iv~~H~P~~~~~~~~~~~~~G~~~~~~~~~~~~~~~l~~l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~ 322 (402)
...++++|.+..... .+...+..++...+++++++||.|. ......+++.+++.|+.+..
T Consensus 81 ~~~i~~~H~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~GH~H~-~~~~~~~~~~~~~~Gs~~~~ 140 (156)
T PF12850_consen 81 GFKILLSHGHPYDVQ-------------------WDPAELREILSRENVDLVLHGHTHR-PQVFKIGGIHVINPGSIGGP 140 (156)
T ss_dssp TEEEEEESSTSSSST-------------------TTHHHHHHHHHHTTSSEEEESSSSS-EEEEEETTEEEEEE-GSSS-
T ss_pred CCeEEEECCCCcccc-------------------cChhhhhhhhcccCCCEEEcCCccc-ceEEEECCEEEEECCcCCCC
Confidence 468899998653310 1234455666677899999999999 45556789999988887765
Q ss_pred CCCCCCCCcceEEEEEe
Q 015684 323 AYGKAGWERRARVVVAS 339 (402)
Q Consensus 323 ~y~~~~~~~g~rv~ei~ 339 (402)
..+. ++++-+++++
T Consensus 141 ~~~~---~~~~~i~~~~ 154 (156)
T PF12850_consen 141 RHGD---QSGYAILDIE 154 (156)
T ss_dssp SSSS---SEEEEEEEET
T ss_pred CCCC---CCEEEEEEEe
Confidence 5443 6889888875
No 40
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=99.44 E-value=1.8e-12 Score=125.94 Aligned_cols=87 Identities=26% Similarity=0.422 Sum_probs=61.2
Q ss_pred eEEEEEeccCCcC-CCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChh--hHHHHHHHHHhHh
Q 015684 44 FKILQVADMHFAN-GKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDAT--DAAKSLNAAFAPA 120 (402)
Q Consensus 44 ~~i~~iSDlH~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~--~~~~~~~~~l~~~ 120 (402)
|||+|+||+|+|. ...... +.. ...+++..+.+.+.++++|+||++|| +++.+.+ .....+.+.+..+
T Consensus 1 mkilHtSD~HLG~~~~~~~~------r~~--d~~~~f~~~l~~a~~~~vD~vliAGD-lFd~~~Ps~~a~~~~~~~l~~l 71 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPS------RLE--DQKKAFDELLEIAKEEKVDFVLIAGD-LFDTNNPSPRALKLFLEALRRL 71 (390)
T ss_pred CeeEEecccccchhhccCcc------chH--HHHHHHHHHHHHHHHccCCEEEEccc-cccCCCCCHHHHHHHHHHHHHh
Confidence 7999999999993 221110 000 12345556666667789999999999 6766544 3445566777777
Q ss_pred HhCCCCEEEEcCCCCCCCC
Q 015684 121 IASNIPWVAVLGNHDQEST 139 (402)
Q Consensus 121 ~~~~iP~~~v~GNHD~~~~ 139 (402)
...+||+++++||||....
T Consensus 72 ~~~~Ipv~~I~GNHD~~~~ 90 (390)
T COG0420 72 KDAGIPVVVIAGNHDSPSR 90 (390)
T ss_pred ccCCCcEEEecCCCCchhc
Confidence 6788999999999998654
No 41
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.41 E-value=4.7e-12 Score=114.70 Aligned_cols=77 Identities=25% Similarity=0.334 Sum_probs=51.7
Q ss_pred eEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHH--hcCCCEEEEcCCccCC---CC-hhhHHHHHHHHH
Q 015684 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMIS--AEKPDLIVFTGDNIFG---FD-ATDAAKSLNAAF 117 (402)
Q Consensus 44 ~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~--~~~pD~vv~~GDli~~---~~-~~~~~~~~~~~l 117 (402)
||++++||+|++.... ...+.+.+.++ +.+||+|+++||++.. .. .......+.+.+
T Consensus 1 M~i~~iSDlHl~~~~~-----------------~~~~~~~~~l~~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l 63 (241)
T PRK05340 1 MPTLFISDLHLSPERP-----------------AITAAFLRFLRGEARQADALYILGDLFEAWIGDDDPSPFAREIAAAL 63 (241)
T ss_pred CcEEEEeecCCCCCCh-----------------hHHHHHHHHHHhhhccCCEEEEccceeccccccCcCCHHHHHHHHHH
Confidence 6899999999985431 11133333332 3689999999995532 11 122344556677
Q ss_pred hHhHhCCCCEEEEcCCCCCC
Q 015684 118 APAIASNIPWVAVLGNHDQE 137 (402)
Q Consensus 118 ~~~~~~~iP~~~v~GNHD~~ 137 (402)
+.+...++|+++++||||..
T Consensus 64 ~~l~~~g~~v~~v~GNHD~~ 83 (241)
T PRK05340 64 KALSDSGVPCYFMHGNRDFL 83 (241)
T ss_pred HHHHHcCCeEEEEeCCCchh
Confidence 77766789999999999973
No 42
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.40 E-value=1.1e-11 Score=104.73 Aligned_cols=55 Identities=18% Similarity=0.263 Sum_probs=37.4
Q ss_pred HHHHHHHcCCeeEEEeccCCCCcccccCCCeeEEecCCccCCCCCCCCCCcceEEEEEe
Q 015684 281 FFTTMVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYHAYGKAGWERRARVVVAS 339 (402)
Q Consensus 281 ~l~~l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~~y~~~~~~~g~rv~ei~ 339 (402)
.+..+.+..+++++++||+|. ......+++.++..|+.+-...+ . .+++-+++++
T Consensus 97 ~l~~~~~~~~~d~vi~GHtH~-~~~~~~~~~~~iNpGs~~~~~~~--~-~~~~~il~~~ 151 (158)
T TIGR00040 97 VLEYLAKELGVDVLIFGHTHI-PVAEELRGILLINPGSLTGPRNG--N-TPSYAILDVD 151 (158)
T ss_pred HHHHHHhccCCCEEEECCCCC-CccEEECCEEEEECCccccccCC--C-CCeEEEEEec
Confidence 345566666789999999999 45566788888877665522111 1 3577777775
No 43
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.36 E-value=1.8e-11 Score=100.67 Aligned_cols=61 Identities=20% Similarity=0.336 Sum_probs=41.2
Q ss_pred EEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCC
Q 015684 45 KILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASN 124 (402)
Q Consensus 45 ~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~ 124 (402)
||+++||+|.... .++..+||+||++|| +...+....++.+.+.+.. .+
T Consensus 1 ~i~~isD~H~~~~---------------------------~~~~~~~D~vi~~GD-~~~~~~~~~~~~~~~~l~~---~~ 49 (135)
T cd07379 1 RFVCISDTHSRHR---------------------------TISIPDGDVLIHAGD-LTERGTLEELQKFLDWLKS---LP 49 (135)
T ss_pred CEEEEeCCCCCCC---------------------------cCcCCCCCEEEECCC-CCCCCCHHHHHHHHHHHHh---CC
Confidence 5899999995421 123468999999999 5555544444444455543 34
Q ss_pred CC-EEEEcCCCCC
Q 015684 125 IP-WVAVLGNHDQ 136 (402)
Q Consensus 125 iP-~~~v~GNHD~ 136 (402)
.| +++|+||||.
T Consensus 50 ~~~~~~v~GNHD~ 62 (135)
T cd07379 50 HPHKIVIAGNHDL 62 (135)
T ss_pred CCeEEEEECCCCC
Confidence 44 5789999996
No 44
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=99.34 E-value=1.1e-10 Score=100.22 Aligned_cols=56 Identities=13% Similarity=0.040 Sum_probs=36.5
Q ss_pred HHHHHHcCCeeEEEeccCCCCcccccCCCeeEEecCCccCCCCCC-C-CCCcceEEEEEe
Q 015684 282 FTTMVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYHAYGK-A-GWERRARVVVAS 339 (402)
Q Consensus 282 l~~l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~~y~~-~-~~~~g~rv~ei~ 339 (402)
+..+.+..+++++++||+|. ......+|+.++..||.+.. ++. . ...+.+-+++++
T Consensus 98 ~~~~~~~~~~dvii~GHTH~-p~~~~~~g~~viNPGSv~~~-~~~~~~~~~~syail~~~ 155 (178)
T cd07394 98 LAALQRQLDVDILISGHTHK-FEAFEHEGKFFINPGSATGA-FSPLDPNVIPSFVLMDIQ 155 (178)
T ss_pred HHHHHHhcCCCEEEECCCCc-ceEEEECCEEEEECCCCCCC-CCCCCCCCCCeEEEEEec
Confidence 44555556789999999999 46667788888888777632 111 1 112456666664
No 45
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.32 E-value=1.4e-11 Score=112.99 Aligned_cols=81 Identities=33% Similarity=0.399 Sum_probs=56.1
Q ss_pred CceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhH
Q 015684 42 GEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAI 121 (402)
Q Consensus 42 ~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~ 121 (402)
..++|+|+||+|+.... .........+..+.||+|+++||+++. ........+.+.++++.
T Consensus 43 ~~~~iv~lSDlH~~~~~------------------~~~~~~~~~i~~~~~DlivltGD~~~~-~~~~~~~~~~~~L~~L~ 103 (284)
T COG1408 43 QGLKIVQLSDLHSLPFR------------------EEKLALLIAIANELPDLIVLTGDYVDG-DRPPGVAALALFLAKLK 103 (284)
T ss_pred CCeEEEEeehhhhchhh------------------HHHHHHHHHHHhcCCCEEEEEeeeecC-CCCCCHHHHHHHHHhhh
Confidence 56889999999987543 111223334456788999999997775 22334455666666653
Q ss_pred hCCCCEEEEcCCCCCCCCCCH
Q 015684 122 ASNIPWVAVLGNHDQESTLSR 142 (402)
Q Consensus 122 ~~~iP~~~v~GNHD~~~~~~~ 142 (402)
...+++++.||||+......
T Consensus 104 -~~~gv~av~GNHd~~~~~~~ 123 (284)
T COG1408 104 -APLGVFAVLGNHDYGVDRSN 123 (284)
T ss_pred -ccCCEEEEeccccccccccc
Confidence 56789999999999766554
No 46
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=99.28 E-value=8.1e-11 Score=105.88 Aligned_cols=74 Identities=23% Similarity=0.341 Sum_probs=47.8
Q ss_pred EEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHh--cCCCEEEEcCCccCC---C-ChhhHHHHHHHHHhHh
Q 015684 47 LQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISA--EKPDLIVFTGDNIFG---F-DATDAAKSLNAAFAPA 120 (402)
Q Consensus 47 ~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~--~~pD~vv~~GDli~~---~-~~~~~~~~~~~~l~~~ 120 (402)
+++||+|++.... ...+.+.+.+.+ .+||+|+++||++.. . ......+.+.+.++.+
T Consensus 2 ~~iSDlHl~~~~~-----------------~~~~~~l~~l~~~~~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L 64 (231)
T TIGR01854 2 LFISDLHLSPERP-----------------DITALFLDFLREEARKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQV 64 (231)
T ss_pred eEEEecCCCCCCh-----------------hHHHHHHHHHHhhhccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHH
Confidence 7999999986421 011223333332 389999999995542 1 1122334555667766
Q ss_pred HhCCCCEEEEcCCCCCC
Q 015684 121 IASNIPWVAVLGNHDQE 137 (402)
Q Consensus 121 ~~~~iP~~~v~GNHD~~ 137 (402)
.+.++|+++|+||||..
T Consensus 65 ~~~~~~v~~v~GNHD~~ 81 (231)
T TIGR01854 65 SDQGVPCYFMHGNRDFL 81 (231)
T ss_pred HHCCCeEEEEcCCCchh
Confidence 66689999999999974
No 47
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.27 E-value=1.7e-10 Score=97.14 Aligned_cols=51 Identities=18% Similarity=0.322 Sum_probs=36.0
Q ss_pred HHHcCCeeEEEeccCCCCcccccCCCeeEEecCCccCCCCCCCCCCcceEEEEEe
Q 015684 285 MVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYHAYGKAGWERRARVVVAS 339 (402)
Q Consensus 285 l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~~y~~~~~~~g~rv~ei~ 339 (402)
+.+..+++++++||+|.. .....+++.+++.|+.+.... .-.+++-+++++
T Consensus 97 ~~~~~~~d~vi~GHtH~~-~~~~~~~~~~inpGs~~~~~~---~~~~~~~i~~~~ 147 (155)
T cd00841 97 LAKEGGADVVLYGHTHIP-VIEKIGGVLLLNPGSLSLPRG---GGPPTYAILEID 147 (155)
T ss_pred hhhhcCCCEEEECcccCC-ccEEECCEEEEeCCCccCcCC---CCCCeEEEEEec
Confidence 344556899999999994 555678888888877763221 124678888876
No 48
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=99.24 E-value=7.6e-11 Score=100.62 Aligned_cols=90 Identities=23% Similarity=0.276 Sum_probs=52.1
Q ss_pred EEEeccCCcCCCCCCCCCCCcccc-cCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChh--hHHHHHHHHHhHhHh-
Q 015684 47 LQVADMHFANGKTTPCLDVLPSQV-AGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDAT--DAAKSLNAAFAPAIA- 122 (402)
Q Consensus 47 ~~iSDlH~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~--~~~~~~~~~l~~~~~- 122 (402)
+.+||+|++.......+.+.-+.. ....+....+.+..+++..+||+||++||++.+.... ..+....+.+..+..
T Consensus 1 llvaDpql~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~i~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~ 80 (171)
T cd07384 1 LLVADPQILDETSYPPRPKIALRLTRFYTDAYMRRAFKTALQRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFL 80 (171)
T ss_pred CcccCccccCCCCCCCCchhhhHHHHHhHHHHHHHHHHHHHHhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcc
Confidence 358999999765322111100000 0112344556677778889999999999955443221 223333333333221
Q ss_pred -----CCCCEEEEcCCCCC
Q 015684 123 -----SNIPWVAVLGNHDQ 136 (402)
Q Consensus 123 -----~~iP~~~v~GNHD~ 136 (402)
.++|+++|+||||.
T Consensus 81 ~~~~~~~~~~~~v~GNHD~ 99 (171)
T cd07384 81 PSNGLEDIPVYYVPGNHDI 99 (171)
T ss_pred cccccCCceEEEECCcccc
Confidence 27899999999998
No 49
>PRK09453 phosphodiesterase; Provisional
Probab=99.24 E-value=1.4e-10 Score=100.41 Aligned_cols=71 Identities=20% Similarity=0.201 Sum_probs=46.2
Q ss_pred eEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChh----hHHHHHHHHHhH
Q 015684 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDAT----DAAKSLNAAFAP 119 (402)
Q Consensus 44 ~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~----~~~~~~~~~l~~ 119 (402)
|||+++||+|... ..++.+.+.+++.+||.|+++||++. .+.. ..+. ..+.++.
T Consensus 1 mri~viSD~Hg~~--------------------~~~~~~l~~~~~~~~d~ii~lGDi~~-~~~~~~~~~~~~-~~~~~~~ 58 (182)
T PRK09453 1 MKLMFASDTHGSL--------------------PATEKALELFAQSGADWLVHLGDVLY-HGPRNPLPEGYA-PKKVAEL 58 (182)
T ss_pred CeEEEEEeccCCH--------------------HHHHHHHHHHHhcCCCEEEEcccccc-cCcCCCCccccC-HHHHHHH
Confidence 6999999999421 12355666666789999999999543 3211 1111 1233333
Q ss_pred hHhCCCCEEEEcCCCCC
Q 015684 120 AIASNIPWVAVLGNHDQ 136 (402)
Q Consensus 120 ~~~~~iP~~~v~GNHD~ 136 (402)
+.+.+.|+++|+||||.
T Consensus 59 l~~~~~~v~~V~GNhD~ 75 (182)
T PRK09453 59 LNAYADKIIAVRGNCDS 75 (182)
T ss_pred HHhcCCceEEEccCCcc
Confidence 33456799999999996
No 50
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=99.23 E-value=1.1e-10 Score=100.28 Aligned_cols=86 Identities=16% Similarity=0.170 Sum_probs=49.1
Q ss_pred EEEeccCCcCCCCCCCC-CCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhH----
Q 015684 47 LQVADMHFANGKTTPCL-DVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAI---- 121 (402)
Q Consensus 47 ~~iSDlH~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~---- 121 (402)
+.+||+|+-........ .++ .++ ..+....+....+++..+||+||++||++ +.+.....+.+.+.++.+.
T Consensus 1 llvADPqllg~~~~~~~~~~~-~~~--~~D~yl~r~~~~a~~~l~PD~Vi~lGDL~-D~G~~~~~~e~~e~l~Rf~~If~ 76 (195)
T cd08166 1 LLVADPQILGYQNENFGLGWI-ARW--DSDRYLKKTYHLALNFVQPDIVIFLGDLM-DEGSIANDDEYYSYVQRFINIFE 76 (195)
T ss_pred CcccCccccCCCCCCccccHH-HHH--HHHHHHHHHHHHHHhccCCCEEEEecccc-CCCCCCCHHHHHHHHHHHHHHhc
Confidence 35789998754321100 000 000 02333445556667778999999999954 4443322222333333322
Q ss_pred -hCCCCEEEEcCCCCC
Q 015684 122 -ASNIPWVAVLGNHDQ 136 (402)
Q Consensus 122 -~~~iP~~~v~GNHD~ 136 (402)
..++|++++|||||.
T Consensus 77 ~~~~~~~~~VpGNHDI 92 (195)
T cd08166 77 VPNGTKIIYLPGDNDI 92 (195)
T ss_pred CCCCCcEEEECCCCCc
Confidence 257899999999998
No 51
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=99.22 E-value=9.9e-10 Score=100.41 Aligned_cols=216 Identities=16% Similarity=0.151 Sum_probs=105.7
Q ss_pred eEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCC-EEEEcCCccCCCChhhHHHHHHHHHhHhHh
Q 015684 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPD-LIVFTGDNIFGFDATDAAKSLNAAFAPAIA 122 (402)
Q Consensus 44 ~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD-~vv~~GDli~~~~~~~~~~~~~~~l~~~~~ 122 (402)
++|+|++|+| ..... .... ......+..+.+.+++++|| +++.+||++.+.. ...+..-...++.+..
T Consensus 1 ~~il~~nd~~-~~~~~-~~~~--------~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~-~~~~~~g~~~~~~l~~ 69 (257)
T cd07406 1 FTILHFNDVY-EIAPL-DGGP--------VGGAARFATLRKQLRKENPNTLVLFSGDVLSPSL-LSTATKGKQMVPVLNA 69 (257)
T ss_pred CeEEEEccce-eeccc-CCCC--------cCCHHHHHHHHHHHHhcCCCEEEEECCCccCCcc-chhhcCCccHHHHHHh
Confidence 5899999999 22111 0000 12333344455555556788 9999999654432 1111111122232323
Q ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHhcCCcccccC---CCCCccccccccc-eEEeccCCCCCCCCceeEEEEEEeC
Q 015684 123 SNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVN---PSDAHIIDGFGNY-NLEIGGVKGSGFENKSVLNLYFLDS 198 (402)
Q Consensus 123 ~~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~g~~~y-~~~~~~~~~~~~~~~~~~~l~~lDs 198 (402)
.+. -+.++||||+... .+.+.+.+....+.+-.-+ .........+.-| .+++.+ ..+.++.+.+
T Consensus 70 l~~-d~~~~GNHefd~g--~~~l~~~~~~~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g---------~kIgviG~~~ 137 (257)
T cd07406 70 LGV-DLACFGNHEFDFG--EDQLQKRLGESKFPWLSSNVFDATGGGPLPNGKESAIIERAG---------VKIGLLGLVE 137 (257)
T ss_pred cCC-cEEeecccccccC--HHHHHHHHhhCCCCEEEEEEEECCCCcccCCCCCeEEEEECC---------eEEEEEEEec
Confidence 444 3668999998543 4455555544332211100 0000111111122 233333 2255666665
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccCCCcccccCCcCCCCCCC
Q 015684 199 GDYSTVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVN 278 (402)
Q Consensus 199 ~~~~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~G~~~~~~~~~~~~ 278 (402)
............+..-.+-.+.+++.++++++. ....+|+++|.+..+.
T Consensus 138 ~~~~~~~~~~~~~~~~~d~~~~~~~~v~~~~~~---------~~D~iVvl~H~g~~~d---------------------- 186 (257)
T cd07406 138 EEWLETLTIDPEYVRYRDYVETARELVDELREQ---------GADLIIALTHMRLPND---------------------- 186 (257)
T ss_pred ccccccccCCCCcceEcCHHHHHHHHHHHHHhC---------CCCEEEEEeccCchhh----------------------
Confidence 322110001111221123344466666555542 4566888888876431
Q ss_pred hHHHHHHHH-cCCeeEEEeccCCCCcccccCCCeeEEecCC
Q 015684 279 SGFFTTMVA-AGDVKAVFTGHDHVNDFCGRLTGIQLCYGGG 318 (402)
Q Consensus 279 ~~~l~~l~~-~~~v~~v~~GH~H~~~~~~~~~gi~~~~~~~ 318 (402)
..+.+ -.+++++++||.|. ......+++.+..++.
T Consensus 187 ----~~la~~~~~iD~IlgGH~H~-~~~~~~~~t~vv~~g~ 222 (257)
T cd07406 187 ----KRLAREVPEIDLILGGHDHE-YILVQVGGTPIVKSGS 222 (257)
T ss_pred ----HHHHHhCCCCceEEecccce-eEeeeECCEEEEeCCc
Confidence 11222 25799999999998 4555667777666543
No 52
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.20 E-value=1.6e-11 Score=106.75 Aligned_cols=72 Identities=22% Similarity=0.354 Sum_probs=50.6
Q ss_pred EEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCC--CEEEEcCCccCCC-----ChhhHHHHHHHHHhH
Q 015684 47 LQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKP--DLIVFTGDNIFGF-----DATDAAKSLNAAFAP 119 (402)
Q Consensus 47 ~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p--D~vv~~GDli~~~-----~~~~~~~~~~~~l~~ 119 (402)
++|||+|+++..+ ...+.+.+.++...+ |.+.+.|| +++. ..++..+...+.+..
T Consensus 1 lFISDlHL~~~~p-----------------~~t~~fl~Fl~~~a~~ad~lyilGD-ifd~w~g~~~~~~~~~~V~~~l~~ 62 (237)
T COG2908 1 LFISDLHLGPKRP-----------------ALTAFFLDFLREEAAQADALYILGD-IFDGWIGDDEPPQLHRQVAQKLLR 62 (237)
T ss_pred CeeeccccCCCCc-----------------HHHHHHHHHHHhccccCcEEEEech-hhhhhhcCCcccHHHHHHHHHHHH
Confidence 4799999996542 122556666666555 99999999 4443 123444555566666
Q ss_pred hHhCCCCEEEEcCCCCC
Q 015684 120 AIASNIPWVAVLGNHDQ 136 (402)
Q Consensus 120 ~~~~~iP~~~v~GNHD~ 136 (402)
+.+.|.|+|+++||||+
T Consensus 63 ~a~~G~~v~~i~GN~Df 79 (237)
T COG2908 63 LARKGTRVYYIHGNHDF 79 (237)
T ss_pred HHhcCCeEEEecCchHH
Confidence 66789999999999996
No 53
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=99.19 E-value=6e-10 Score=91.47 Aligned_cols=85 Identities=24% Similarity=0.320 Sum_probs=46.8
Q ss_pred eEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHh--cCCCEEEEcCCccCCC-ChhhHHHHHHHHHhHh
Q 015684 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISA--EKPDLIVFTGDNIFGF-DATDAAKSLNAAFAPA 120 (402)
Q Consensus 44 ~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~--~~pD~vv~~GDli~~~-~~~~~~~~~~~~l~~~ 120 (402)
|+|..+||+|+..+..... +.+...|..+. +.+.+--.. ..-|.|++.|| |.-. .-++....+ +.+.
T Consensus 1 M~iyaiaDLHLa~~~pKpM-~vFGe~W~gh~-----ekI~k~W~~~v~~eDiVllpGD-iSWaM~l~ea~~Dl-~~i~-- 70 (230)
T COG1768 1 MRIYAIADLHLALGVPKPM-EVFGEPWSGHH-----EKIKKHWRSKVSPEDIVLLPGD-ISWAMRLEEAEEDL-RFIG-- 70 (230)
T ss_pred CceeeeehhhHhhCCCCce-eecCCcccCch-----HHHHHHHHhcCChhhEEEeccc-chhheechhhhhhh-hhhh--
Confidence 6788999999997764321 12222222221 223332221 24499999999 5433 222222222 2333
Q ss_pred HhCCCCEEEEcCCCCCCCC
Q 015684 121 IASNIPWVAVLGNHDQEST 139 (402)
Q Consensus 121 ~~~~iP~~~v~GNHD~~~~ 139 (402)
...---+.+.||||++..
T Consensus 71 -~LPG~K~m~rGNHDYWw~ 88 (230)
T COG1768 71 -DLPGTKYMIRGNHDYWWS 88 (230)
T ss_pred -cCCCcEEEEecCCccccc
Confidence 334447889999999876
No 54
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.18 E-value=3e-10 Score=92.01 Aligned_cols=69 Identities=26% Similarity=0.291 Sum_probs=44.8
Q ss_pred EEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCC
Q 015684 47 LQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIP 126 (402)
Q Consensus 47 ~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP 126 (402)
+++||+|.+..... . ........+.+||+||++||++.... ...+..+.. +......++|
T Consensus 1 ~~~gD~h~~~~~~~----------------~--~~~~~~~~~~~~~~vi~~GD~~~~~~-~~~~~~~~~-~~~~~~~~~~ 60 (131)
T cd00838 1 AVISDIHGNLEALE----------------A--VLEAALAAAEKPDFVLVLGDLVGDGP-DPEEVLAAA-LALLLLLGIP 60 (131)
T ss_pred CeeecccCCccchH----------------H--HHHHHHhcccCCCEEEECCcccCCCC-CchHHHHHH-HHHhhcCCCC
Confidence 47899999865321 0 01124445689999999999555443 333333322 3334457999
Q ss_pred EEEEcCCCC
Q 015684 127 WVAVLGNHD 135 (402)
Q Consensus 127 ~~~v~GNHD 135 (402)
+++++||||
T Consensus 61 ~~~~~GNHD 69 (131)
T cd00838 61 VYVVPGNHD 69 (131)
T ss_pred EEEeCCCce
Confidence 999999999
No 55
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.16 E-value=5.6e-10 Score=90.75 Aligned_cols=37 Identities=35% Similarity=0.440 Sum_probs=25.4
Q ss_pred hcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCCCC
Q 015684 88 AEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHD 135 (402)
Q Consensus 88 ~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GNHD 135 (402)
..++|+++++|| +.. +.. ..+..+ .+.|+++|+||||
T Consensus 20 ~~~~d~ii~~GD-~~~----~~~----~~~~~~--~~~~~~~V~GN~D 56 (129)
T cd07403 20 LEGVDLILSAGD-LPK----EYL----EYLVTM--LNVPVYYVHGNHD 56 (129)
T ss_pred CCCCCEEEECCC-CCh----HHH----HHHHHH--cCCCEEEEeCCCc
Confidence 578999999999 421 111 222222 3678999999999
No 56
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=99.15 E-value=5.5e-09 Score=96.78 Aligned_cols=231 Identities=19% Similarity=0.163 Sum_probs=106.7
Q ss_pred eEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEE-cCCccCCCChhhHHH------HHHHH
Q 015684 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVF-TGDNIFGFDATDAAK------SLNAA 116 (402)
Q Consensus 44 ~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~-~GDli~~~~~~~~~~------~~~~~ 116 (402)
++|++++|+|-.-.+. .+.. ...........+..+.+.+++++||.+++ +||++.+... ..+. .-...
T Consensus 1 l~il~t~D~Hg~~~~~-~~~~---~~~~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~-~~~~~~~~~~~~~~~ 75 (277)
T cd07410 1 LRILATSDLHGNLLPY-DYYT---DKPDASGGLARVATLIKKARAENPNTLLIDNGDTIQGSPL-ADYYAKIEDGDPHPM 75 (277)
T ss_pred CeEEEEeccccceeCc-cccC---CCcCCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccHH-HHHhhhcccCCCChH
Confidence 5899999999432211 1110 00000122333344555555678998887 9996554321 1111 01123
Q ss_pred HhHhHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHhcCCcccccCCCCCc-cccccccc-eEEec-cCCCCCCCCceeEEE
Q 015684 117 FAPAIASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNPSDAH-IIDGFGNY-NLEIG-GVKGSGFENKSVLNL 193 (402)
Q Consensus 117 l~~~~~~~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~~y-~~~~~-~~~~~~~~~~~~~~l 193 (402)
++.+...+.. ++++||||+... .+.+.+.+......+-..+-.... .......| .+.+. + ..+.+
T Consensus 76 ~~~ln~~g~d-~~~lGNHe~d~g--~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g---------~kVgv 143 (277)
T cd07410 76 IAAMNALGYD-AGTLGNHEFNYG--LDYLDKVIKQANFPVLSANVIDADTGEPFLKPYVILERDVG---------VKVGI 143 (277)
T ss_pred HHHHHhcCCC-EEeecccCcccC--HHHHHHHHHhCCCCEEEEEEEeCCCCCcccCCEEEEEecCC---------CEEEE
Confidence 3333345654 667799998543 345555554433221100000000 00001123 23333 3 12445
Q ss_pred EEEeCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccCCCcccccCCc
Q 015684 194 YFLDSGDYSTV--PSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEG 271 (402)
Q Consensus 194 ~~lDs~~~~~~--~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~G~~~~~ 271 (402)
+.+-+...... +.. ..+.--.+-.+.+++.++++++. ....+|+++|.+.......
T Consensus 144 iG~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~v~~lr~~---------~~D~IIvl~H~g~~~~~~~------------ 201 (277)
T cd07410 144 IGLTTPQIPNWEKPNL-IGGLKFTDPVETAKKYVPKLRAE---------GADVVVVLAHGGFERDLEE------------ 201 (277)
T ss_pred EecCCcccccccCccc-CCCcEEcCHHHHHHHHHHHHHHc---------CCCEEEEEecCCcCCCccc------------
Confidence 55443211110 110 01111112233466666666542 4567999999977431100
Q ss_pred CCCCCCChHHHHHHHHc-CCeeEEEeccCCCCcccc-cCCCeeEEecC
Q 015684 272 ISSASVNSGFFTTMVAA-GDVKAVFTGHDHVNDFCG-RLTGIQLCYGG 317 (402)
Q Consensus 272 ~~~~~~~~~~l~~l~~~-~~v~~v~~GH~H~~~~~~-~~~gi~~~~~~ 317 (402)
. .........|.+. .+|+++++||.|.. ... ..+++.++-++
T Consensus 202 --~-~~~~~~~~~la~~~~~vD~IlgGHsH~~-~~~~~~~~~~v~q~g 245 (277)
T cd07410 202 --S-LTGENAAYELAEEVPGIDAILTGHQHRR-FPGPTVNGVPVVQPG 245 (277)
T ss_pred --c-cCCccHHHHHHhcCCCCcEEEeCCCccc-cccCCcCCEEEEcCC
Confidence 0 0011223455555 68999999999984 444 45666665443
No 57
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=99.13 E-value=6.4e-10 Score=99.18 Aligned_cols=77 Identities=22% Similarity=0.222 Sum_probs=43.8
Q ss_pred EEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCC-----ChhhHHHHHHHHHhHhH
Q 015684 47 LQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGF-----DATDAAKSLNAAFAPAI 121 (402)
Q Consensus 47 ~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~-----~~~~~~~~~~~~l~~~~ 121 (402)
++|||+|++..... .......+.......+||.||++||++... .....+......+....
T Consensus 1 ~~iSDlHlg~~~~~--------------~~~~~~~~~~~~~~~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~ 66 (217)
T cd07398 1 LFISDLHLGDGGPA--------------ADFLLLFLLAALALGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLA 66 (217)
T ss_pred CEeeeecCCCCCCC--------------HHHHHHHHHhhhccCCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHH
Confidence 47999999976431 111112221111135999999999955321 11122222212233334
Q ss_pred hCCCCEEEEcCCCCCC
Q 015684 122 ASNIPWVAVLGNHDQE 137 (402)
Q Consensus 122 ~~~iP~~~v~GNHD~~ 137 (402)
..++++++++||||..
T Consensus 67 ~~~~~v~~v~GNHD~~ 82 (217)
T cd07398 67 DRGTRVYYVPGNHDFL 82 (217)
T ss_pred HCCCeEEEECCCchHH
Confidence 5789999999999983
No 58
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=99.06 E-value=2.3e-08 Score=91.33 Aligned_cols=95 Identities=19% Similarity=0.187 Sum_probs=51.1
Q ss_pred eEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCC-EEEEcCCccCCCChhhHHHHHHHHHhHhHh
Q 015684 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPD-LIVFTGDNIFGFDATDAAKSLNAAFAPAIA 122 (402)
Q Consensus 44 ~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD-~vv~~GDli~~~~~~~~~~~~~~~l~~~~~ 122 (402)
++|+++||+| +.-.. +.. ......+..+.+.+++..|| +++.+||++.+..... .......++.+..
T Consensus 1 l~i~~~sD~h-g~~~~--~~~--------~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~-~~~~~~~~~~l~~ 68 (252)
T cd00845 1 LTILHTNDLH-GHFEP--AGG--------VGGAARLATLIKEERAENENTLLLDAGDNFDGSPPST-ATKGEANIELMNA 68 (252)
T ss_pred CEEEEecccc-cCccc--cCC--------cCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchh-ccCCcHHHHHHHh
Confidence 5899999999 33211 100 01233334455555667788 7899999766543221 1111222232323
Q ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHhcC
Q 015684 123 SNIPWVAVLGNHDQESTLSREGVMKHIVTLK 153 (402)
Q Consensus 123 ~~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~ 153 (402)
.+. .++++||||+... .+.+.+.+....
T Consensus 69 ~g~-d~~~~GNHe~d~g--~~~l~~~~~~~~ 96 (252)
T cd00845 69 LGY-DAVTIGNHEFDYG--LDALAELYKDAN 96 (252)
T ss_pred cCC-CEEeecccccccc--HHHHHHHHHhCC
Confidence 443 5577899998543 334555554443
No 59
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.92 E-value=2e-07 Score=85.59 Aligned_cols=225 Identities=17% Similarity=0.136 Sum_probs=103.8
Q ss_pred eEEEEEeccCCcCCCCCCC-CCC-CcccccCCCChhHHHHHHHHHHhc-CCCEEE-EcCCccCCCChhhHHHHHHHHHhH
Q 015684 44 FKILQVADMHFANGKTTPC-LDV-LPSQVAGCSDLNTTAFINRMISAE-KPDLIV-FTGDNIFGFDATDAAKSLNAAFAP 119 (402)
Q Consensus 44 ~~i~~iSDlH~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~l~~~i~~~-~pD~vv-~~GDli~~~~~~~~~~~~~~~l~~ 119 (402)
++|++++|+|-.-.+.... ... .+...........+..+.+.+++. .||.++ .+||++.+... ..+..-...+..
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~~~~~~~gG~~r~~~~v~~~~~~~~~~~l~l~~GD~~~gs~~-~~~~~g~~~~~~ 79 (264)
T cd07411 1 LTLLHINDLHGQLIPHYELEPSNLLARVFGMAGGFAHIATLIKRIRAERNPNTLLLDGGDTWQGSGE-ALYTRGQAMVDA 79 (264)
T ss_pred CEEEEEcccccCccccccccccccccccccccCcHHHHHHHHHHHHHhcCCCeEEEeCCCccCCChH-HhhcCChhHHHH
Confidence 4799999999764331100 000 000001112333344455555556 899874 59996654422 111111223333
Q ss_pred hHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHhcCCcccccCC--CCCccccccccceE-EeccCCCCCCCCceeEEEEEE
Q 015684 120 AIASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVNP--SDAHIIDGFGNYNL-EIGGVKGSGFENKSVLNLYFL 196 (402)
Q Consensus 120 ~~~~~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~g~~~y~~-~~~~~~~~~~~~~~~~~l~~l 196 (402)
+.. +++.++.||||+... .+.+.+.+....+.+-.-+- .... ......|.+ ...+ ..+.++.+
T Consensus 80 l~~--~g~da~~GNHefd~g--~~~l~~~~~~~~~~~l~aN~~~~~~~-~~~~~~~~i~~~~g---------~kVgviG~ 145 (264)
T cd07411 80 LNA--LGVDAMVGHWEFTYG--PERVRELFGRLNWPFLAANVYDDEAG-ERVFPPYRIKEVGG---------VKIGVIGQ 145 (264)
T ss_pred HHh--hCCeEEecccccccC--HHHHHHHHhhCCCCEEEEEEEeCCCC-CcccCCEEEEEECC---------EEEEEEEe
Confidence 323 344444499998644 34455555444332111000 0000 000112333 3333 22566777
Q ss_pred eCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccCCCcccccCCcCCCC
Q 015684 197 DSGDYSTV-PSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSA 275 (402)
Q Consensus 197 Ds~~~~~~-~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~G~~~~~~~~~ 275 (402)
.+...... +.....++.-....+.+++.+.++++. .....+|+++|.+....
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~D~iI~l~H~g~~~~------------------- 198 (264)
T cd07411 146 TFPYVPIANPPRFTPGLTFGIREEELQEVVVKLRRE--------EGVDVVVLLSHNGLPVD------------------- 198 (264)
T ss_pred ccCCcccccCcCCCCCcEECCHHHHHHHHHHHHHHh--------CCCCEEEEEecCCchhh-------------------
Confidence 65321110 100011222223455566665555432 25567888888876321
Q ss_pred CCChHHHHHHH-HcCCeeEEEeccCCCCccc--ccCCCeeEEecC
Q 015684 276 SVNSGFFTTMV-AAGDVKAVFTGHDHVNDFC--GRLTGIQLCYGG 317 (402)
Q Consensus 276 ~~~~~~l~~l~-~~~~v~~v~~GH~H~~~~~--~~~~gi~~~~~~ 317 (402)
..+. +..+|+++++||.|..... ...+++.+..++
T Consensus 199 -------~~la~~~~~iDlilgGH~H~~~~~~~~~~~~t~v~~~g 236 (264)
T cd07411 199 -------VELAERVPGIDVILSGHTHERTPKPIIAGGGTLVVEAG 236 (264)
T ss_pred -------HHHHhcCCCCcEEEeCcccccccCcccccCCEEEEEcC
Confidence 1222 2257999999999973221 124666666554
No 60
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.92 E-value=3.1e-07 Score=85.36 Aligned_cols=78 Identities=19% Similarity=0.139 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccCCCcccccCCcCCCCCCChHHHHHHHHc--CCeeEE
Q 015684 217 QQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGFFTTMVAA--GDVKAV 294 (402)
Q Consensus 217 q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~G~~~~~~~~~~~~~~~l~~l~~~--~~v~~v 294 (402)
..+-+++.++++++. ....+|+++|.......... . .+. .......++.. .+++++
T Consensus 176 ~~e~~~~~v~~lr~~---------~~D~IIvL~H~G~~~~~~~~------~-~~~------~~~~~~~l~~~~~~~iD~I 233 (288)
T cd07412 176 EVEAINAVAPELKAG---------GVDAIVVLAHEGGSTKGGDD------T-CSA------ASGPIADIVNRLDPDVDVV 233 (288)
T ss_pred HHHHHHHHHHHHHHC---------CCCEEEEEeCCCCCCCCCCc------c-ccc------cChhHHHHHhhcCCCCCEE
Confidence 345577777777642 45678889998764311100 0 000 01112333333 479999
Q ss_pred EeccCCCCcccc---cCCCeeEEecC
Q 015684 295 FTGHDHVNDFCG---RLTGIQLCYGG 317 (402)
Q Consensus 295 ~~GH~H~~~~~~---~~~gi~~~~~~ 317 (402)
++||.|.. ... ..+++.++-++
T Consensus 234 lgGHsH~~-~~~~~~~~~~~~v~q~g 258 (288)
T cd07412 234 FAGHTHQA-YNCTVPAGNPRLVTQAG 258 (288)
T ss_pred EeCccCcc-ccccccCcCCEEEEecC
Confidence 99999984 333 45677766554
No 61
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=98.91 E-value=6.4e-08 Score=98.21 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccCCCcccccCCcCCCCCCChHHHHHHHHc---CCeeE
Q 015684 217 QQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGFFTTMVAA---GDVKA 293 (402)
Q Consensus 217 q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~G~~~~~~~~~~~~~~~l~~l~~~---~~v~~ 293 (402)
..+-+++..++++++ ....-+|+++|..+...... + +.. .+. ..|.++ .+|++
T Consensus 193 ~~e~a~~~v~~Lk~~--------~~~D~IV~LsH~G~~~~~~~------~---~~~----~~d---~~la~~~~~~~IDv 248 (551)
T PRK09558 193 PAEEAKKVIPELKQT--------EKPDVIIALTHMGHYDDGEH------G---SNA----PGD---VEMARSLPAGGLDM 248 (551)
T ss_pred HHHHHHHHHHHHHhc--------cCCCEEEEEeccccccCCcc------C---CCC----ccH---HHHHHhCCccCceE
Confidence 344466777777642 25667899999877331100 0 000 011 223322 27999
Q ss_pred EEeccCCC
Q 015684 294 VFTGHDHV 301 (402)
Q Consensus 294 v~~GH~H~ 301 (402)
++.||.|.
T Consensus 249 IlgGHsH~ 256 (551)
T PRK09558 249 IVGGHSQD 256 (551)
T ss_pred EEeCCCCc
Confidence 99999997
No 62
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.89 E-value=1.5e-07 Score=86.07 Aligned_cols=95 Identities=17% Similarity=0.143 Sum_probs=49.8
Q ss_pred eEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhC
Q 015684 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIAS 123 (402)
Q Consensus 44 ~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~ 123 (402)
++|++++|+|-.-.... . .......+..+.+.++++++++++.+||.+.+... .....-...++.+...
T Consensus 1 i~il~~~D~H~~~~~~~---~-------~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~-~~~~~g~~~~~~ln~~ 69 (257)
T cd07408 1 ITILHTNDIHGRIDEDD---N-------NGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPI-SDLDKGETIIKIMNAV 69 (257)
T ss_pred CEEEEeccCcccccCCC---C-------ccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchh-hhhcCCcHHHHHHHhc
Confidence 58999999995432210 0 00122222333333343467899999996654321 1111111233333345
Q ss_pred CCCEEEEcCCCCCCCCCCHHHHHHHHHhc
Q 015684 124 NIPWVAVLGNHDQESTLSREGVMKHIVTL 152 (402)
Q Consensus 124 ~iP~~~v~GNHD~~~~~~~~~~~~~~~~~ 152 (402)
+..+ .++||||+... .+.+.+.....
T Consensus 70 g~d~-~~~GNHefd~G--~~~l~~~~~~~ 95 (257)
T cd07408 70 GYDA-VTPGNHEFDYG--LDRLKELSKEA 95 (257)
T ss_pred CCcE-EccccccccCC--HHHHHHHHhhC
Confidence 6666 56799998643 34555555443
No 63
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=98.88 E-value=7.2e-08 Score=81.62 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCeeEEEeccCCCCcccccCCCeeEEecCCccCCCCCCCCCCcceEEEEEe
Q 015684 280 GFFTTMVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYHAYGKAGWERRARVVVAS 339 (402)
Q Consensus 280 ~~l~~l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~~y~~~~~~~g~rv~ei~ 339 (402)
..++.+.+..+.++++.||+|.. ...+.+|+.++..|+.+ +..+. ..+++=+++++
T Consensus 99 ~~l~~la~~~~~Dvli~GHTH~p-~~~~~~~i~~vNPGS~s-~pr~~--~~~sy~il~~~ 154 (172)
T COG0622 99 SLLEYLAKELGADVLIFGHTHKP-VAEKVGGILLVNPGSVS-GPRGG--NPASYAILDVD 154 (172)
T ss_pred HHHHHHHHhcCCCEEEECCCCcc-cEEEECCEEEEcCCCcC-CCCCC--CCcEEEEEEcC
Confidence 45677778888999999999994 44466777666555443 22221 34466677665
No 64
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=98.86 E-value=5.4e-08 Score=93.02 Aligned_cols=92 Identities=24% Similarity=0.388 Sum_probs=61.5
Q ss_pred CCceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhh---HHHHHHHHH
Q 015684 41 NGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATD---AAKSLNAAF 117 (402)
Q Consensus 41 ~~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~---~~~~~~~~l 117 (402)
++.+||++.||.|+|.+.....+.. ....+++.+.....+.++|+|++.|| ++..+.+. .++.+ +.|
T Consensus 11 entirILVaTD~HlGY~EkD~vrg~--------DSf~tFeEIl~iA~e~~VDmiLlGGD-LFHeNkPSr~~L~~~i-~lL 80 (646)
T KOG2310|consen 11 ENTIRILVATDNHLGYGEKDAVRGD--------DSFVTFEEILEIAQENDVDMILLGGD-LFHENKPSRKTLHRCL-ELL 80 (646)
T ss_pred ccceEEEEeecCccccccCCccccc--------chHHHHHHHHHHHHhcCCcEEEecCc-ccccCCccHHHHHHHH-HHH
Confidence 5789999999999997764332110 13456777788888899999999999 55554332 12211 111
Q ss_pred ---------------------------------hHhHhCCCCEEEEcCCCCCCCCCCH
Q 015684 118 ---------------------------------APAIASNIPWVAVLGNHDQESTLSR 142 (402)
Q Consensus 118 ---------------------------------~~~~~~~iP~~~v~GNHD~~~~~~~ 142 (402)
.+-..-.|||+.+-||||...+.++
T Consensus 81 RryClgdkP~~le~lSD~s~~f~~~~f~~VNY~DpNlNIsIPVFsIHGNHDDpSG~~~ 138 (646)
T KOG2310|consen 81 RRYCLGDKPVQLEILSDQSVNFGNSVFGNVNYEDPNLNISIPVFSIHGNHDDPSGDGR 138 (646)
T ss_pred HHHccCCCceeeEEecccceeccccccceecccCCCcceeeeeEEeecCCCCCccccc
Confidence 1111246899999999999776553
No 65
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=98.84 E-value=5.5e-09 Score=89.51 Aligned_cols=85 Identities=24% Similarity=0.395 Sum_probs=52.1
Q ss_pred EEEeccCCcCCCCCCC-CCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHH-HhHhHhCC
Q 015684 47 LQVADMHFANGKTTPC-LDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAA-FAPAIASN 124 (402)
Q Consensus 47 ~~iSDlH~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~-l~~~~~~~ 124 (402)
+++||+|+|....... ....|.. ...++++.+.+.+++.+||.||++||++.+..... ....... +......+
T Consensus 1 l~isDlHlG~~~~~~~~g~~~p~~----~~~~~~~~l~~~~~~~~~d~lii~GDl~~~~~~~~-~~~~~~~~~~~~~~~~ 75 (172)
T cd07391 1 LVVADLHLGKEEELRRRGILLPRG----QTEDTLERLDRLIEEYGPERLIILGDLKHSFGGLS-RQEFEEVAFLRLLAKD 75 (172)
T ss_pred CEeEeeccchHHHHHhcCCcCCcc----cHHHHHHHHHHHHHhcCCCEEEEeCcccccccccC-HHHHHHHHHHHhccCC
Confidence 4799999996542100 1111111 22356778888888899999999999664433221 1111111 22333468
Q ss_pred CCEEEEcCCCCC
Q 015684 125 IPWVAVLGNHDQ 136 (402)
Q Consensus 125 iP~~~v~GNHD~ 136 (402)
+|+++++||||.
T Consensus 76 ~~v~~i~GNHD~ 87 (172)
T cd07391 76 VDVILIRGNHDG 87 (172)
T ss_pred CeEEEEcccCcc
Confidence 899999999997
No 66
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.83 E-value=9.4e-07 Score=91.71 Aligned_cols=75 Identities=16% Similarity=0.221 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccCCCcccccCCcCCCCCCChHHHHHHHHcCCeeEEEec
Q 015684 218 QFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGFFTTMVAAGDVKAVFTG 297 (402)
Q Consensus 218 ~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~G~~~~~~~~~~~~~~~l~~l~~~~~v~~v~~G 297 (402)
++=+++.+.++++. ....+|+++|..+..... ... ..++. ..+.+-.+|++|+.|
T Consensus 230 veaa~~~v~~Lr~~---------GaDvIIaLsH~G~~~d~~----------~~~----~ena~--~~l~~v~gID~IlgG 284 (780)
T PRK09418 230 VETAKKMVPKMKAE---------GADVIVALAHSGVDKSGY----------NVG----MENAS--YYLTEVPGVDAVLMG 284 (780)
T ss_pred HHHHHHHHHHHHhc---------CCCEEEEEeccCcccccc----------ccc----chhhh--HHHhcCCCCCEEEEC
Confidence 34466666667642 456789999987743100 000 01221 113334689999999
Q ss_pred cCCCCcccccCCCeeEEecCC
Q 015684 298 HDHVNDFCGRLTGIQLCYGGG 318 (402)
Q Consensus 298 H~H~~~~~~~~~gi~~~~~~~ 318 (402)
|.|. .+....+|+.++.++.
T Consensus 285 HsH~-~~~~~ingv~vvqaG~ 304 (780)
T PRK09418 285 HSHT-EVKDVFNGVPVVMPGV 304 (780)
T ss_pred CCCC-cccccCCCEEEEEcCh
Confidence 9999 5666678887776543
No 67
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.79 E-value=2.2e-06 Score=79.43 Aligned_cols=210 Identities=19% Similarity=0.184 Sum_probs=96.5
Q ss_pred eEEEEEeccCCcCCCCCCCCCC-CcccccCCCChhHHHHHHHHHHhcCCC-EEEEcCCccCCCChhhHHHHHHHHHhHhH
Q 015684 44 FKILQVADMHFANGKTTPCLDV-LPSQVAGCSDLNTTAFINRMISAEKPD-LIVFTGDNIFGFDATDAAKSLNAAFAPAI 121 (402)
Q Consensus 44 ~~i~~iSDlH~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~i~~~~pD-~vv~~GDli~~~~~~~~~~~~~~~l~~~~ 121 (402)
++|++++|+|-.-......... .............+..+.+.++++.++ +++-+||.+.+..... ...-...++.+.
T Consensus 1 l~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~~~~l~ld~GD~~~gs~~~~-~~~g~~~~~~ln 79 (281)
T cd07409 1 LTILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAENPNVLFLNAGDAFQGTLWYT-LYKGNADAEFMN 79 (281)
T ss_pred CEEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCcchhh-hcCChHHHHHHH
Confidence 5799999999653221100000 000000011222233334444445777 4555999665432111 111112222233
Q ss_pred hCCCCEEEEcCCCCCCCCCCHHHHHHHHHhcCCcc--cccCCCCC--ccccccccce-EEeccCCCCCCCCceeEEEEEE
Q 015684 122 ASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTL--SQVNPSDA--HIIDGFGNYN-LEIGGVKGSGFENKSVLNLYFL 196 (402)
Q Consensus 122 ~~~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~--~~~~g~~~y~-~~~~~~~~~~~~~~~~~~l~~l 196 (402)
..+..+. ++||||+.... +.+.+.+....+.. ..+..... ........|. +.+.+ ..+.++.+
T Consensus 80 ~~g~D~~-~lGNHefd~G~--~~l~~~~~~~~~p~l~aNv~~~~~~~~~~~~~~p~~i~~~~G---------~kIgviG~ 147 (281)
T cd07409 80 LLGYDAM-TLGNHEFDDGV--EGLAPFLNNLKFPVLSANIDTSNEPPLLDGLLKPSTILTVGG---------EKIGIIGY 147 (281)
T ss_pred hcCCCEE-EeccccccCCH--HHHHHHHHhCCCCEEEEeeecCCCccccccccCCeEEEEECC---------EEEEEEEE
Confidence 4566654 56999996543 34445444333211 11111110 0001111232 23333 22556666
Q ss_pred eCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccCCCcccccCCcCCCCC
Q 015684 197 DSGDYSTVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSAS 276 (402)
Q Consensus 197 Ds~~~~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~G~~~~~~~~~~ 276 (402)
-+........ +..+.--.+..+.+++.++++++. ....+|+++|......
T Consensus 148 ~~~~~~~~~~-~~~~~~~~d~~~~~~~~v~~lr~~---------~~D~II~l~H~G~~~d-------------------- 197 (281)
T cd07409 148 TTPDTTELSS-PGGKVKFLDEIEAAQKEADKLKAQ---------GVNKIIALSHSGYEVD-------------------- 197 (281)
T ss_pred ecCccccccc-CCCceEECCHHHHHHHHHHHHHhc---------CCCEEEEEeccCchhH--------------------
Confidence 5532111111 011222223456688887777752 4567888889876321
Q ss_pred CChHHHHHHHHc-CCeeEEEeccCCCC
Q 015684 277 VNSGFFTTMVAA-GDVKAVFTGHDHVN 302 (402)
Q Consensus 277 ~~~~~l~~l~~~-~~v~~v~~GH~H~~ 302 (402)
..|.++ .+++++++||.|..
T Consensus 198 ------~~la~~~~giD~IiggH~H~~ 218 (281)
T cd07409 198 ------KEIARKVPGVDVIVGGHSHTF 218 (281)
T ss_pred ------HHHHHcCCCCcEEEeCCcCcc
Confidence 122222 57999999999984
No 68
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.76 E-value=7.6e-07 Score=97.80 Aligned_cols=225 Identities=15% Similarity=0.096 Sum_probs=99.2
Q ss_pred CceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEE-cCCccCCCChhhHH---HH-----
Q 015684 42 GEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVF-TGDNIFGFDATDAA---KS----- 112 (402)
Q Consensus 42 ~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~-~GDli~~~~~~~~~---~~----- 112 (402)
..++|++++|+|-.-.......+. + ........+..+.+.++++.|+.+++ +||++.+....+.. ..
T Consensus 40 ~~l~il~tnD~Hg~l~~~~y~~~~-~---~~~~Glar~at~i~~~r~~~~n~llld~GD~~qGs~l~~~~~~~~~~~~~~ 115 (1163)
T PRK09419 40 VNIQILATTDLHGNFMDYDYASDK-E---TTGFGLAQTATLIKKARKENPNTLLVDNGDLIQGNPLGEYAVKDNILFKNK 115 (1163)
T ss_pred eEEEEEEEecccccccccccccCC-C---CCCcCHHHHHHHHHHHHHhCCCeEEEeCCCccCCChhhhHHhhhccccCCC
Confidence 469999999999763321111000 0 00012222333444445567776665 99966654211100 00
Q ss_pred HHHHHhHhHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHhcCCcc--cccCCCCCccccccccceEE-e--ccCCCCCCCC
Q 015684 113 LNAAFAPAIASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTL--SQVNPSDAHIIDGFGNYNLE-I--GGVKGSGFEN 187 (402)
Q Consensus 113 ~~~~l~~~~~~~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~g~~~y~~~-~--~~~~~~~~~~ 187 (402)
-...+..+...+.- ++++||||+..+ .+.+.+.+....+.+ ..+...... ..+..|.+. . ...+|. ..
T Consensus 116 ~~~~i~~mN~lgyD-a~~lGNHEFd~G--~~~L~~~~~~a~fp~l~aNv~~~~~~--~~~~py~I~~~~~~~~~g~--~~ 188 (1163)
T PRK09419 116 THPMIKAMNALGYD-AGTLGNHEFNYG--LDFLDGTIKGANFPVLNANVKYKNGK--NVYTPYKIKEKTVTDENGK--KQ 188 (1163)
T ss_pred cCHHHHHHhhcCcc-EEeecccccccC--HHHHHHHHhcCCCCEEEeeeecCCCC--cccCCEEEEEEEeeccCCC--CC
Confidence 00122222223443 567999999654 345555554433221 111111100 011123332 1 111110 01
Q ss_pred ceeEEEEEEeCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccCCCccc
Q 015684 188 KSVLNLYFLDSGDYSTVPSVPGYG-WIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTG 266 (402)
Q Consensus 188 ~~~~~l~~lDs~~~~~~~~~~~~g-~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~G 266 (402)
...+.++.+-+............| ..-.+..+=+++.+.++++. ...-+|+++|..+....... |
T Consensus 189 gvkIgiiG~~~p~~~~~~~~~~~g~~~~~d~v~~~~~~v~~lk~~---------gaDvII~l~H~G~~~~~~~~-----~ 254 (1163)
T PRK09419 189 GVKVGYIGFVPPQIMTWDKKNLKGKVEVKNIVEEANKTIPEMKKG---------GADVIVALAHSGIESEYQSS-----G 254 (1163)
T ss_pred CeEEEEEecCCcchhhcchhhccCcEEECCHHHHHHHHHHHHHhc---------CCCEEEEEeccCcCCCCCCC-----C
Confidence 122455666442110000000011 11122233366666666542 55678999998874311000 0
Q ss_pred ccCCcCCCCCCChHHHHHHH-HcCCeeEEEeccCCCC
Q 015684 267 VRQEGISSASVNSGFFTTMV-AAGDVKAVFTGHDHVN 302 (402)
Q Consensus 267 ~~~~~~~~~~~~~~~l~~l~-~~~~v~~v~~GH~H~~ 302 (402)
.......|. +-.+|++++.||.|..
T Consensus 255 -----------~en~~~~la~~~~gID~Il~GHsH~~ 280 (1163)
T PRK09419 255 -----------AEDSVYDLAEKTKGIDAIVAGHQHGL 280 (1163)
T ss_pred -----------cchHHHHHHHhCCCCcEEEeCCCccc
Confidence 111223455 3368999999999983
No 69
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=98.72 E-value=4.3e-07 Score=90.13 Aligned_cols=216 Identities=14% Similarity=0.271 Sum_probs=85.3
Q ss_pred CceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCCh---------------
Q 015684 42 GEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDA--------------- 106 (402)
Q Consensus 42 ~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~--------------- 106 (402)
..+||++.|+-++..+. ...+..+++..+|||+|++||.|+.+..
T Consensus 104 ~~~r~a~~SC~~~~~~~--------------------~~~~~~~a~~~~~D~~l~lGD~IY~d~~~~~~~~~~~~~~r~~ 163 (453)
T PF09423_consen 104 DPFRFAFGSCQNYEDGY--------------------FPAYRRIAERDDPDFVLHLGDQIYEDGGGGYGNLSRRPIGRAP 163 (453)
T ss_dssp --EEEEEE----CCC-----------------------HHHHHHTT-S--SEEEE-S-SS----TTSS--TT---S----
T ss_pred CceEEEEECCCCcccCh--------------------HHHHHhhhccCCCcEEEEeCCeeeccCCccccccccccccccc
Confidence 35999999999875332 1334455444799999999999999852
Q ss_pred -----h---hHHHH-HH-----HHHhHhHhCCCCEEEEcCCCCCCCCCCH----------HHHHH-HHHhcCCcccccCC
Q 015684 107 -----T---DAAKS-LN-----AAFAPAIASNIPWVAVLGNHDQESTLSR----------EGVMK-HIVTLKNTLSQVNP 161 (402)
Q Consensus 107 -----~---~~~~~-~~-----~~l~~~~~~~iP~~~v~GNHD~~~~~~~----------~~~~~-~~~~~~~~~~~~~p 161 (402)
. +.|+. +. ..++.+. ..+|+++++=.||+.++... ..... ........ ..+.|
T Consensus 164 ~p~~~~~~l~~yR~~y~~~~~~p~l~~~~-~~~P~~~iwDDHdi~nn~~~~~~~~~~~~~~~~~~~~~~a~~ay-~e~~p 241 (453)
T PF09423_consen 164 EPAHEAETLDDYRRRYRQYRSDPDLRRLH-ANVPWIMIWDDHDIGNNWWGDGAENHQDTSGDFQDRRRAAYQAY-FEYQP 241 (453)
T ss_dssp -SSSS--SHHHHHHHHHHHHT-HHHHHHH-HHSEEEE---STTTSTT-BTTB-STT---HHHHHHHHHHHHHHH-HHHS-
T ss_pred ccccccccHHHHHHHHHHHcCCHHHHHHh-hcccEEEEccCceecccccCCccccccccccchHHHHHHHHHHH-HhhcC
Confidence 0 11111 11 1222222 47899999999999765440 00000 00000000 00111
Q ss_pred CCCc--cc-cccccceEEeccCCCCCCCCceeEEEEEEeCCCCCCCCCC------------CCCCCCCHHHHHHHHHHHH
Q 015684 162 SDAH--II-DGFGNYNLEIGGVKGSGFENKSVLNLYFLDSGDYSTVPSV------------PGYGWIKPSQQFWFEQTSA 226 (402)
Q Consensus 162 ~~~~--~~-~g~~~y~~~~~~~~~~~~~~~~~~~l~~lDs~~~~~~~~~------------~~~g~i~~~q~~Wl~~~l~ 226 (402)
.... .. ....++.+.++. .+.+++||+..|...+.. +....++++|.+||++.|+
T Consensus 242 ~r~~~~~~~~~~~y~~~~~G~----------~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~mLG~~Q~~wL~~~L~ 311 (453)
T PF09423_consen 242 VRNPDPPGDQGRIYRSFRYGD----------LVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRTMLGEEQWDWLEDWLA 311 (453)
T ss_dssp --GGG-BTTB----EEEEETT----------TEEEEE--SSSS----CCCSSEE--HHHH-TT--SS-HHHHHHHHHHHH
T ss_pred ccCCCccCCCCceEEEEecCC----------ceeEEEEechhccccccccccccccccccCCccCcCCHHHHHHHHHHHh
Confidence 1100 00 111234555554 278999999877553211 3345689999999999976
Q ss_pred HHHHhhcCCccccCCCCCeEEEEecChhhhhcccCCCcccccCCcCC-CCCCChHHHHHHHHcCCe--eEEEeccCCCC
Q 015684 227 RLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGIS-SASVNSGFFTTMVAAGDV--KAVFTGHDHVN 302 (402)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~l~~l~~~~~v--~~v~~GH~H~~ 302 (402)
+- ...+.|+.+-.|+................+... .+..-.++++.|.+. ++ .++|+|..|..
T Consensus 312 ~s------------~a~~kvi~s~v~~~~~~~~~~~~~~~~~~d~W~g~~~er~~Ll~~l~~~-~~~~vV~LSGDvH~~ 377 (453)
T PF09423_consen 312 SS------------QATWKVIGSSVPFSPLNFPDAAEGLPFNMDSWDGYPAERQRLLDFLRES-GIRNVVFLSGDVHAS 377 (453)
T ss_dssp H--------------SSEEEEE-SS--S---SS-SS-S--EETTSGGGSHHHHHHHHHHHHHT-T---EEEEE-SSSSE
T ss_pred cC------------CCcEEEEEeCCceecccccccccccccCCCchhhCHHHHHHHHHHHHhh-CCCCEEEEecCcchh
Confidence 42 466788888777644211110000000111111 111112445555444 34 48999999983
No 70
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.69 E-value=1.7e-06 Score=95.08 Aligned_cols=218 Identities=14% Similarity=0.068 Sum_probs=105.7
Q ss_pred CceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEE-cCCccCCCChhhHHHHHHHHHhHh
Q 015684 42 GEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVF-TGDNIFGFDATDAAKSLNAAFAPA 120 (402)
Q Consensus 42 ~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~-~GDli~~~~~~~~~~~~~~~l~~~ 120 (402)
.+++|++++|+|-.-. ....+..+.+.+++.+||.+++ +||++.+... ..+..-...++.+
T Consensus 659 ~~l~Il~~nD~Hg~l~-----------------g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~-~~~~~g~~~~~~l 720 (1163)
T PRK09419 659 WELTILHTNDFHGHLD-----------------GAAKRVTKIKEVKEENPNTILVDAGDVYQGSLY-SNLLKGLPVLKMM 720 (1163)
T ss_pred eEEEEEEEeecccCCC-----------------CHHHHHHHHHHHHhhCCCeEEEecCCCCCCcch-hhhcCChHHHHHH
Confidence 3599999999993221 1112233344445678998877 9996654321 1111111223323
Q ss_pred HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHhcC--------------CcccccC-CCCCccccccccceE-EeccCCCCC
Q 015684 121 IASNIPWVAVLGNHDQESTLSREGVMKHIVTLK--------------NTLSQVN-PSDAHIIDGFGNYNL-EIGGVKGSG 184 (402)
Q Consensus 121 ~~~~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~--------------~~~~~~~-p~~~~~~~g~~~y~~-~~~~~~~~~ 184 (402)
...+. -++++||||+..+. +.+.+.+.... +-...+. ............|.+ ++.+
T Consensus 721 n~lg~-d~~~~GNHEfd~g~--~~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~~~~~~~~~~py~I~e~~G----- 792 (1163)
T PRK09419 721 KEMGY-DASTFGNHEFDWGP--DVLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKKTGKLVSWAKPYILVEVNG----- 792 (1163)
T ss_pred hCcCC-CEEEecccccccCh--HHHHHHHHhcccccccccccCCCCCEEEEEEEeCCCCccccccCCEEEEEECC-----
Confidence 23343 45699999996543 34444444321 1111100 000000001112322 3322
Q ss_pred CCCceeEEEEEEeCCCC--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccCC
Q 015684 185 FENKSVLNLYFLDSGDY--STVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQS 262 (402)
Q Consensus 185 ~~~~~~~~l~~lDs~~~--~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~ 262 (402)
..+.++.+-+... ...+.. ..+.--.+..+.+++..++++++ .....+|+++|........
T Consensus 793 ----~kIgiiGltt~~~~~~~~p~~-~~~l~f~d~~e~~~~~v~~Lr~~--------~~~D~VV~LsH~G~~~d~~---- 855 (1163)
T PRK09419 793 ----KKVGFIGLTTPETAYKTSPGN-VKNLEFKDPAEAAKKWVKELKEK--------EKVDAIIALTHLGSNQDRT---- 855 (1163)
T ss_pred ----EEEEEEEecccccccccCCCC-cCCcEEcCHHHHHHHHHHHHHhh--------cCCCEEEEEecCCcccccc----
Confidence 2255666654211 011110 01222223455577777777732 2566789999997743100
Q ss_pred CcccccCCcCCCCCCChHHHHHHHH-cCCeeEEEeccCCCCcccccCCCeeEEecC
Q 015684 263 NFTGVRQEGISSASVNSGFFTTMVA-AGDVKAVFTGHDHVNDFCGRLTGIQLCYGG 317 (402)
Q Consensus 263 ~~~G~~~~~~~~~~~~~~~l~~l~~-~~~v~~v~~GH~H~~~~~~~~~gi~~~~~~ 317 (402)
.+ ......|.+ -.+|++++.||.|. ......+++.++-++
T Consensus 856 --~~------------~~~~~~lA~~v~gIDvIigGHsH~-~~~~~v~~~~ivqag 896 (1163)
T PRK09419 856 --TG------------EITGLELAKKVKGVDAIISAHTHT-LVDKVVNGTPVVQAY 896 (1163)
T ss_pred --cc------------ccHHHHHHHhCCCCCEEEeCCCCc-cccccCCCEEEEeCC
Confidence 00 111233444 35799999999998 454455777666443
No 71
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=98.68 E-value=4e-07 Score=86.02 Aligned_cols=95 Identities=23% Similarity=0.217 Sum_probs=54.3
Q ss_pred CCceEEEEEeccCCcCCCCCCCCCCCcccccCC-CChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHH---
Q 015684 41 NGEFKILQVADMHFANGKTTPCLDVLPSQVAGC-SDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAA--- 116 (402)
Q Consensus 41 ~~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~--- 116 (402)
++.+||+.+||+|+-...... ........+ .|....+.........+||.+++.||+++ .|.....+++.+.
T Consensus 46 ~n~~ki~~vaDPQilg~~~~~---~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfD-eG~~~~~eEf~~~~~R 121 (410)
T KOG3662|consen 46 ENSTKILLVADPQILGNWPKK---FLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFD-EGQWAGDEEFKKRYER 121 (410)
T ss_pred CCceEEEEecCchhcCCCCCc---cccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccc-cCccCChHHHHHHHHH
Confidence 578999999999997533110 000111111 23333333333444579999999999554 3332222222222
Q ss_pred HhHhH--hCCCCEEEEcCCCCCCCC
Q 015684 117 FAPAI--ASNIPWVAVLGNHDQEST 139 (402)
Q Consensus 117 l~~~~--~~~iP~~~v~GNHD~~~~ 139 (402)
++.+. +..+|+..+|||||....
T Consensus 122 fkkIf~~k~~~~~~~i~GNhDIGf~ 146 (410)
T KOG3662|consen 122 FKKIFGRKGNIKVIYIAGNHDIGFG 146 (410)
T ss_pred HHHhhCCCCCCeeEEeCCccccccc
Confidence 22222 248999999999998654
No 72
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=98.66 E-value=4.9e-08 Score=86.86 Aligned_cols=85 Identities=13% Similarity=0.128 Sum_probs=54.1
Q ss_pred EEEEEeccCCcCCCCCCCCC-CCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhC
Q 015684 45 KILQVADMHFANGKTTPCLD-VLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIAS 123 (402)
Q Consensus 45 ~i~~iSDlH~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~ 123 (402)
+.+++||+|++.......+. ..|. +...++++.+.+.+++.+||.||++||+.........++.+.+.++. .
T Consensus 16 ~~LvisDlHLG~~~~~~~~Gi~~P~----~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~~~~~~~~~~l~~---~ 88 (225)
T TIGR00024 16 DKAVIADLHLGFERHLDEQGVMVPG----FQFREIIERALSIADKYGIEALIINGDLKHEFKKGLEWRFIREFIEV---T 88 (225)
T ss_pred CeEEEEeccCCCHHHHHhcCCcCCh----hHHHHHHHHHHHHHhhcCCCEEEEcCccccccCChHHHHHHHHHHHh---c
Confidence 57899999999644211100 0110 11234566777777788999999999955433322444555555543 3
Q ss_pred CCCEEEEcCCCCC
Q 015684 124 NIPWVAVLGNHDQ 136 (402)
Q Consensus 124 ~iP~~~v~GNHD~ 136 (402)
..++++|+||||.
T Consensus 89 ~~~v~~V~GNHD~ 101 (225)
T TIGR00024 89 FRDLILIRGNHDA 101 (225)
T ss_pred CCcEEEECCCCCC
Confidence 5699999999996
No 73
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.65 E-value=3.4e-06 Score=76.73 Aligned_cols=64 Identities=14% Similarity=0.098 Sum_probs=38.4
Q ss_pred CCCeEEEEecChhhhhcccCCC-c----ccccCCcCCCCCCChHHHHHHHHcCCeeEEEeccCCCCccccc
Q 015684 242 PAPGLVYFHIPLPEFAYFDQSN-F----TGVRQEGISSASVNSGFFTTMVAAGDVKAVFTGHDHVNDFCGR 307 (402)
Q Consensus 242 ~~~~iv~~H~P~~~~~~~~~~~-~----~G~~~~~~~~~~~~~~~l~~l~~~~~v~~v~~GH~H~~~~~~~ 307 (402)
...-|+++|-|+.......... + .+. .+.+.....++..+..|++.-+.+++||||.|. .+...
T Consensus 164 ~~vDIlLSHdWP~gI~~~~~~~~l~~~~~~~-~~~~~~~~~Gs~~~~~ll~~lkPryhf~gH~H~-~f~~~ 232 (262)
T cd00844 164 QPIDIFLSHDWPRGIYKHGDKKQLLRKKPFF-RQDIESGTLGSPAAEELLKHLKPRYWFSAHLHV-KFAAL 232 (262)
T ss_pred CCCcEEEeCCCCcchhhccchHHhhhcCccc-hhcccccCCCCHHHHHHHHHhCCCEEEEecCCc-cccee
Confidence 3468999999875532211000 0 000 011112234678888999998999999999998 45533
No 74
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=98.60 E-value=1.8e-06 Score=87.19 Aligned_cols=232 Identities=16% Similarity=0.112 Sum_probs=111.5
Q ss_pred CCCceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhH---HHHHHHH
Q 015684 40 QNGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDA---AKSLNAA 116 (402)
Q Consensus 40 ~~~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~---~~~~~~~ 116 (402)
...+++|+|++|+|-.-..... .+.... .....+....+.+.-++.+..++|-+||++.+..-... .....+.
T Consensus 23 ~~~~l~ilhtnD~H~~l~~~~~-~~~~~~---~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~ 98 (517)
T COG0737 23 ETVKLTILHTNDLHGHLEPYDY-DDDGDT---DGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDL 98 (517)
T ss_pred CceeEEEEEeccccccceeccc-cccCcc---cccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccccccCCChHHHH
Confidence 3578999999999987542111 000000 00112232333333233455789999997665432111 1122233
Q ss_pred HhHhHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHhcCCc--ccccCCCCCccccc-cccceEEeccCCCCCCCCceeEEE
Q 015684 117 FAPAIASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNT--LSQVNPSDAHIIDG-FGNYNLEIGGVKGSGFENKSVLNL 193 (402)
Q Consensus 117 l~~~~~~~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~~~--~~~~~p~~~~~~~g-~~~y~~~~~~~~~~~~~~~~~~~l 193 (402)
++. .+ .=+.+.||||+.... +.+.+......+. ...+.......... ..+..+++.+ ..+.+
T Consensus 99 mN~---m~-yDa~tiGNHEFd~g~--~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g---------~KIgi 163 (517)
T COG0737 99 LNA---LG-YDAMTLGNHEFDYGL--EALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGG---------VKIGI 163 (517)
T ss_pred Hhh---cC-CcEEeecccccccCH--HHHHHHHhccCCceEEeeeEecCCCCccCcCCeEEEecCC---------eEEEE
Confidence 332 23 346678999997553 3444544433222 11111110000001 1222333333 23566
Q ss_pred EEEeCCCCC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccCCCcccccCCc
Q 015684 194 YFLDSGDYS--TVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEG 271 (402)
Q Consensus 194 ~~lDs~~~~--~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~G~~~~~ 271 (402)
+.+.+.... ..+. ...++.-.+..+++++.+.+++++ ...-+|+++|.++....... ...+.
T Consensus 164 IG~~~~~~~~~~~~~-~~~~~~f~d~~e~~~~~i~elk~~---------~vD~iI~LsH~G~~~d~~~~------~~~~~ 227 (517)
T COG0737 164 IGLTTPTIPTWEKPN-AIEGVTFRDPIEAAKKYIPELKGE---------GVDVIIALSHLGIEDDLELA------SEVPG 227 (517)
T ss_pred EEecCCccccccccc-ccCCcEEcCHHHHHHHHHHHHHhc---------CCCEEEEEeccCcCcccccc------ccccc
Confidence 776652111 1111 123444456788888988888863 25678999999886421111 00000
Q ss_pred CCCCCCChHHHHHHHHcCCeeEEEeccCCCC----cccccCCCeeEEecC
Q 015684 272 ISSASVNSGFFTTMVAAGDVKAVFTGHDHVN----DFCGRLTGIQLCYGG 317 (402)
Q Consensus 272 ~~~~~~~~~~l~~l~~~~~v~~v~~GH~H~~----~~~~~~~gi~~~~~~ 317 (402)
. ..+.. ..+++++.||.|.. ......+|+.++.++
T Consensus 228 ~----------~~~~~-~~iD~i~~GH~H~~~~~~~~~~~~~~t~ivqag 266 (517)
T COG0737 228 D----------VDVAV-PGIDLIIGGHSHTVFPGGDKPGTVNGTPIVQAG 266 (517)
T ss_pred c----------ccccc-cCcceEeccCCcccccCCcccCccCCEEEEccC
Confidence 0 00001 34999999999962 111124566666554
No 75
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=98.57 E-value=1.5e-06 Score=70.05 Aligned_cols=80 Identities=20% Similarity=0.174 Sum_probs=44.2
Q ss_pred EEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHH-HHHHhcCC-CEEEEcCCccCCCChhhHHHHHHHHHhHhHh
Q 015684 45 KILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFIN-RMISAEKP-DLIVFTGDNIFGFDATDAAKSLNAAFAPAIA 122 (402)
Q Consensus 45 ~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~i~~~~p-D~vv~~GDli~~~~~~~~~~~~~~~l~~~~~ 122 (402)
.+.++||+|++...--..+... ......+.+. +..+..+| |.|-+.||+..+.+.... +..+++.
T Consensus 5 mmyfisDtHfgh~nvi~~~pfs-------n~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~~~~---a~~Iler--- 71 (186)
T COG4186 5 MMYFISDTHFGHKNVISMRPFS-------NPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANRERA---AGLILER--- 71 (186)
T ss_pred EEEEecccccCCcceeecCCCC-------CHHHHhHHHHHhHHhcCCccceEEEecccccccchhhH---HHHHHHH---
Confidence 5678999999965432211100 0111112222 22223455 899999997666554333 3344443
Q ss_pred CCCCEEEEcCCCCCC
Q 015684 123 SNIPWVAVLGNHDQE 137 (402)
Q Consensus 123 ~~iP~~~v~GNHD~~ 137 (402)
++-....|+||||-.
T Consensus 72 LnGrkhlv~GNhDk~ 86 (186)
T COG4186 72 LNGRKHLVPGNHDKC 86 (186)
T ss_pred cCCcEEEeeCCCCCC
Confidence 344468999999973
No 76
>PRK04036 DNA polymerase II small subunit; Validated
Probab=98.54 E-value=3.5e-07 Score=91.28 Aligned_cols=83 Identities=13% Similarity=0.201 Sum_probs=55.2
Q ss_pred CCCceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHH---------hcCCCEEEEcCCccCCCCh----
Q 015684 40 QNGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMIS---------AEKPDLIVFTGDNIFGFDA---- 106 (402)
Q Consensus 40 ~~~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~---------~~~pD~vv~~GDli~~~~~---- 106 (402)
.+..++++++||+|++.... ..+.++.+.+.+. ..+||.||++||++...+.
T Consensus 240 ~~~~~~i~~ISDlHlgs~~~---------------~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~ 304 (504)
T PRK04036 240 KDEKVYAVFISDVHVGSKEF---------------LEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQ 304 (504)
T ss_pred CCCccEEEEEcccCCCCcch---------------hHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccc
Confidence 35679999999999986531 1223345555555 5689999999997654221
Q ss_pred ---------hhHHHHHHHHHhHhHhCCCCEEEEcCCCCCCC
Q 015684 107 ---------TDAAKSLNAAFAPAIASNIPWVAVLGNHDQES 138 (402)
Q Consensus 107 ---------~~~~~~~~~~l~~~~~~~iP~~~v~GNHD~~~ 138 (402)
...++.+.+.+..+. ..+|++++|||||...
T Consensus 305 ~~~~~~~~~~~~~~~l~~~L~~L~-~~i~V~~ipGNHD~~~ 344 (504)
T PRK04036 305 EEELEIVDIYEQYEAAAEYLKQIP-EDIKIIISPGNHDAVR 344 (504)
T ss_pred hhhccchhhHHHHHHHHHHHHhhh-cCCeEEEecCCCcchh
Confidence 012334445555442 5789999999999743
No 77
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=98.52 E-value=6.9e-06 Score=75.81 Aligned_cols=90 Identities=24% Similarity=0.235 Sum_probs=43.7
Q ss_pred CceEEEEEeccCCcCCCCCCCCCCCcccccCCCC-hhHHHHHHHHHHhcCCC-EEEEcCCccCCCChhhH----HHHHHH
Q 015684 42 GEFKILQVADMHFANGKTTPCLDVLPSQVAGCSD-LNTTAFINRMISAEKPD-LIVFTGDNIFGFDATDA----AKSLNA 115 (402)
Q Consensus 42 ~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~i~~~~pD-~vv~~GDli~~~~~~~~----~~~~~~ 115 (402)
.+++|+|++|+|-.-..... . +.....+.. ....+.+.+..++..|+ +++-+||.+.+...... .+...+
T Consensus 4 ~~ltILhtnD~Hg~l~~~~~-~---~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~~~~~g~~~~~ 79 (282)
T cd07407 4 GDINFLHTTDTHGWLGGHLN-D---PNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDASPPPGSYSNP 79 (282)
T ss_pred ceEEEEEEcccccCCcCcCC-c---ccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceeeecCCChHHHH
Confidence 57899999999953221100 0 000001111 11223333333345666 56679996655422111 122223
Q ss_pred HHhHhHhCCCCEEEEcCCCCCCCC
Q 015684 116 AFAPAIASNIPWVAVLGNHDQEST 139 (402)
Q Consensus 116 ~l~~~~~~~iP~~~v~GNHD~~~~ 139 (402)
+++. .+. =++++||||+...
T Consensus 80 ~mN~---mgy-Da~tlGNHEFd~g 99 (282)
T cd07407 80 IFRM---MPY-DLLTIGNHELYNY 99 (282)
T ss_pred HHHh---cCC-cEEeecccccCcc
Confidence 3332 343 4678999999643
No 78
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=98.51 E-value=2.8e-07 Score=83.60 Aligned_cols=76 Identities=17% Similarity=0.270 Sum_probs=47.6
Q ss_pred EEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhc-----CCCEEEEcCCccCCCCh-------------hh
Q 015684 47 LQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAE-----KPDLIVFTGDNIFGFDA-------------TD 108 (402)
Q Consensus 47 ~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-----~pD~vv~~GDli~~~~~-------------~~ 108 (402)
+++||+|++.... ....++.+.+.++.. +||.||++||++..... .+
T Consensus 2 ~~iSDlHl~~~~~---------------~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~ 66 (243)
T cd07386 2 VFISDVHVGSKTF---------------LEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYE 66 (243)
T ss_pred EEecccCCCchhh---------------hHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHH
Confidence 6899999976431 122335566666554 56999999996544210 01
Q ss_pred HHHHHHHHHhHhHhCCCCEEEEcCCCCCCC
Q 015684 109 AAKSLNAAFAPAIASNIPWVAVLGNHDQES 138 (402)
Q Consensus 109 ~~~~~~~~l~~~~~~~iP~~~v~GNHD~~~ 138 (402)
.++.+.+.++.+. .++|++++|||||...
T Consensus 67 ~~~~~~~~l~~L~-~~~~v~~ipGNHD~~~ 95 (243)
T cd07386 67 QYEEAAEYLSDVP-SHIKIIIIPGNHDAVR 95 (243)
T ss_pred HHHHHHHHHHhcc-cCCeEEEeCCCCCccc
Confidence 2233444444432 4689999999999853
No 79
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=98.43 E-value=3.9e-05 Score=71.26 Aligned_cols=92 Identities=17% Similarity=0.155 Sum_probs=44.0
Q ss_pred eEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhc----CC-CEEEEcCCccCCCChhhHHHHHHHHHh
Q 015684 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAE----KP-DLIVFTGDNIFGFDATDAAKSLNAAFA 118 (402)
Q Consensus 44 ~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~----~p-D~vv~~GDli~~~~~~~~~~~~~~~l~ 118 (402)
++|++++|+|-.-...... . .....+..+.+.++++ .+ -+++-+||.+.+... .....-...++
T Consensus 1 ltIl~tnD~Hg~l~~~~~~---------~-gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~-~~~~~g~~~~~ 69 (285)
T cd07405 1 ITILHTNDHHGHFWPNGTG---------E-YGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPE-SDLQDAEPDFR 69 (285)
T ss_pred CEEEEEcccccccccCCCC---------C-ccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchh-HHhcCcchHHH
Confidence 5799999999653321100 0 1111222233333322 33 488899996543321 11111111222
Q ss_pred HhHhCCCCEEEEcCCCCCCCCCCHHHHHHHH
Q 015684 119 PAIASNIPWVAVLGNHDQESTLSREGVMKHI 149 (402)
Q Consensus 119 ~~~~~~iP~~~v~GNHD~~~~~~~~~~~~~~ 149 (402)
.+...+.-+. ++||||+..+. +.+.+..
T Consensus 70 ~~n~~g~Da~-~~GNHEfD~G~--~~L~~~~ 97 (285)
T cd07405 70 GMNLVGYDAM-AVGNHEFDNPL--EVLRQQM 97 (285)
T ss_pred HHHhhCCcEE-eecccccccCH--HHHHHHH
Confidence 2223566544 66999997653 3444443
No 80
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=98.40 E-value=7e-07 Score=76.17 Aligned_cols=77 Identities=17% Similarity=0.148 Sum_probs=43.6
Q ss_pred EEEeccCCcCCCCCCCCCCCcccccCCCChh-HHHHHHHHHHh--cCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhC
Q 015684 47 LQVADMHFANGKTTPCLDVLPSQVAGCSDLN-TTAFINRMISA--EKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIAS 123 (402)
Q Consensus 47 ~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~i~~--~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~ 123 (402)
.++||+|++......... + .+...+ ..+.+.+.+.+ .++|.|+++|| +.+.+....+ .+.++ +.
T Consensus 2 ~~isD~Hlg~~~~~~~~~----~--~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GD-l~~~~~~~~~---~~~l~---~~ 68 (168)
T cd07390 2 YFTSDTHFGHANILRFCN----R--PFDDVEEMDEALIRNWNETVGPDDTVYHLGD-FSFGGKAGTE---LELLS---RL 68 (168)
T ss_pred eEecccccCCHHHHccCC----C--CCCCHHHHHHHHHHHHhhhcCCCCEEEEeCC-CCCCCChHHH---HHHHH---hC
Confidence 479999999754211000 0 001111 22333444443 37899999999 5544433222 23333 35
Q ss_pred CCCEEEEcCCCCC
Q 015684 124 NIPWVAVLGNHDQ 136 (402)
Q Consensus 124 ~iP~~~v~GNHD~ 136 (402)
+.|+++|+||||.
T Consensus 69 ~~~~~~v~GNHD~ 81 (168)
T cd07390 69 NGRKHLIKGNHDS 81 (168)
T ss_pred CCCeEEEeCCCCc
Confidence 6799999999997
No 81
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=98.36 E-value=3.1e-05 Score=78.55 Aligned_cols=210 Identities=18% Similarity=0.195 Sum_probs=92.8
Q ss_pred eEEEEEeccCCcCCCCCCCCCCCcccc-cCCCChhHHHHHHHHHHhcCC-CEEEEcCCccCCCChhhHHHHHHHHHhHhH
Q 015684 44 FKILQVADMHFANGKTTPCLDVLPSQV-AGCSDLNTTAFINRMISAEKP-DLIVFTGDNIFGFDATDAAKSLNAAFAPAI 121 (402)
Q Consensus 44 ~~i~~iSDlH~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~i~~~~p-D~vv~~GDli~~~~~~~~~~~~~~~l~~~~ 121 (402)
++|+|++|+|-.-.+............ ........+..+.+.++++.| -+++.+||.+.+......+ .-...+..+.
T Consensus 1 ltILhtND~Hg~l~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~n~l~ldaGD~~~gs~~~~~~-~g~~~i~~~N 79 (550)
T TIGR01530 1 LSIIHINDHHSHLEPEELEIALAGEQLKAAIGGFAALNAEINKLRAESKNALVLHAGDAIIGTLYFTLF-GGRADAALMN 79 (550)
T ss_pred CEEEEEccccccccCcccccccCCCccccccCCHHHHHHHHHHHHhhCCCeEEEECCCCCCCccchhhc-CCHHHHHHHh
Confidence 579999999965322110000000000 001122222223333333444 5888999965443211111 1011222222
Q ss_pred hCCCCEEEEcCCCCCCCCCCHHHHHHHHHhcCCcc--cccCCCCCcccc-ccccce-EEeccCCCCCCCCceeEEEEEEe
Q 015684 122 ASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTL--SQVNPSDAHIID-GFGNYN-LEIGGVKGSGFENKSVLNLYFLD 197 (402)
Q Consensus 122 ~~~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~-g~~~y~-~~~~~~~~~~~~~~~~~~l~~lD 197 (402)
..+. =+.++||||+..+. +.+.+++....+.+ ..+......... ...-|. +.+.+ ..+.++.+.
T Consensus 80 ~~g~-Da~~lGNHEFd~G~--~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~~p~~i~~~~g---------~kIgiiGl~ 147 (550)
T TIGR01530 80 AAGF-DFFTLGNHEFDAGN--EGLKEFLEPLEIPVLSANVIPDAASILHGKWKPSAIFERAG---------EKIAIIGLD 147 (550)
T ss_pred ccCC-CEEEeccccccCCH--HHHHHHHHhCCCCEEEEeeecCCCcccccCcCceEEEEECC---------eEEEEEEee
Confidence 2344 46788999996543 44555544332211 111100000010 111232 23333 226677776
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccCCCcccccCCcCCCCCC
Q 015684 198 SGDYSTVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASV 277 (402)
Q Consensus 198 s~~~~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~G~~~~~~~~~~~ 277 (402)
+.........+..+..-.+.++=+++..++|++. ...-+|+++|......
T Consensus 148 ~~~~~~~~~~~~~~~~f~d~~~~~~~~v~~Lk~~---------g~D~II~lsH~g~~~d--------------------- 197 (550)
T TIGR01530 148 TVKKTVESSSPGKDIKFIDEIAAAQIAANALKQQ---------GINKIILLSHAGFEKN--------------------- 197 (550)
T ss_pred cCcccccccCCCCceEECCHHHHHHHHHHHHHhC---------CCCEEEEEecCCcHHH---------------------
Confidence 5221111111111221122334366666667642 4567888888865321
Q ss_pred ChHHHHHHHHc-CCeeEEEeccCCC
Q 015684 278 NSGFFTTMVAA-GDVKAVFTGHDHV 301 (402)
Q Consensus 278 ~~~~l~~l~~~-~~v~~v~~GH~H~ 301 (402)
..+.++ .+|+++++||.|.
T Consensus 198 -----~~la~~~~~iD~IigGHsH~ 217 (550)
T TIGR01530 198 -----CEIAQKINDIDVIVSGDSHY 217 (550)
T ss_pred -----HHHHhcCCCCCEEEeCCCCc
Confidence 123332 4799999999998
No 82
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=98.34 E-value=0.0002 Score=67.19 Aligned_cols=17 Identities=18% Similarity=0.397 Sum_probs=13.8
Q ss_pred HHHc-CCeeEEEeccCCC
Q 015684 285 MVAA-GDVKAVFTGHDHV 301 (402)
Q Consensus 285 l~~~-~~v~~v~~GH~H~ 301 (402)
|.++ .+|++++.||.|.
T Consensus 226 lA~~v~gIDvIigGHsH~ 243 (313)
T cd08162 226 LAALLSGVDVIIAGGSNT 243 (313)
T ss_pred HHhcCCCCCEEEeCCCCc
Confidence 4444 4799999999998
No 83
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=98.30 E-value=0.00016 Score=74.56 Aligned_cols=224 Identities=16% Similarity=0.119 Sum_probs=100.1
Q ss_pred CceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCC-CEEEEcCCccCCCChhhHHHHHH------
Q 015684 42 GEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKP-DLIVFTGDNIFGFDATDAAKSLN------ 114 (402)
Q Consensus 42 ~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p-D~vv~~GDli~~~~~~~~~~~~~------ 114 (402)
.+++|++.+|+|-.-.....+.+. +... ..-.++ ..+.+.++++.+ -++|-+||++.+..- ..+....
T Consensus 24 ~~L~IL~TnDlHg~l~~~dy~~~~-~~~~--~Glar~-atli~~~R~e~~n~llvD~GD~~qGsp~-~~~~~~~~~~~g~ 98 (649)
T PRK09420 24 VDLRIMETTDLHSNMMDFDYYKDK-PTEK--FGLVRT-ASLIKAARAEAKNSVLVDNGDLIQGSPL-GDYMAAKGLKAGD 98 (649)
T ss_pred ceEEEEEEcccccCccCCccccCC-cccc--cCHHHH-HHHHHHHHHhCCCEEEEECCCcCCCchh-hhhhhhccccCCC
Confidence 579999999999763321111110 0000 011223 333333344444 478889996654422 1111110
Q ss_pred --HHHhHhHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHhcCCcc--cccC-CCCCccccccccceE-Ee--ccCCCCCCC
Q 015684 115 --AAFAPAIASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTL--SQVN-PSDAHIIDGFGNYNL-EI--GGVKGSGFE 186 (402)
Q Consensus 115 --~~l~~~~~~~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~--~~~~-p~~~~~~~g~~~y~~-~~--~~~~~~~~~ 186 (402)
-.++.+...+. =+.++||||+..+ .+.+.+.+....+.+ ..+. +.... .-+.-|.+ +. ...+|..
T Consensus 99 ~~p~i~amN~lgy-Da~tlGNHEFd~G--~~~L~~~~~~a~fP~l~ANv~~~~~~~--~~~~py~I~e~~v~~~~G~~-- 171 (649)
T PRK09420 99 VHPVYKAMNTLDY-DVGNLGNHEFNYG--LDYLKKALAGAKFPYVNANVIDAKTGK--PLFTPYLIKEKEVKDKDGKE-- 171 (649)
T ss_pred cchHHHHHHhcCC-cEEeccchhhhcC--HHHHHHHHhcCCCCEEEEEEEecCCCC--cccCCeEEEEEEeeccCCCc--
Confidence 12222223444 4678899999654 345555554433221 1111 11000 00112322 11 1111100
Q ss_pred CceeEEEEEEeCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccCCCcc
Q 015684 187 NKSVLNLYFLDSGDYSTVPSVPGYG-WIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFT 265 (402)
Q Consensus 187 ~~~~~~l~~lDs~~~~~~~~~~~~g-~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~ 265 (402)
....+.++.+-+............| ..-.+.++-+++...+++++ ...-+|++.|..+.....
T Consensus 172 ~~vkIGiIGl~~p~~~~w~~~~~~g~v~~~D~ve~a~~~v~~Lk~~---------gaDvII~LsH~G~~~d~~------- 235 (649)
T PRK09420 172 HTIKIGYIGFVPPQIMVWDKANLEGKVTVRDITETARKYVPEMKEK---------GADIVVAIPHSGISADPY------- 235 (649)
T ss_pred cceEEEEEEecCccccccccccCcCceEECCHHHHHHHHHHHHHHc---------CCCEEEEEecCCcCCCCc-------
Confidence 0122556665442111000000011 11223455577777777752 466789999987733100
Q ss_pred cccCCcCCCCCCChHHHHHHHHcCCeeEEEeccCCCC
Q 015684 266 GVRQEGISSASVNSGFFTTMVAAGDVKAVFTGHDHVN 302 (402)
Q Consensus 266 G~~~~~~~~~~~~~~~l~~l~~~~~v~~v~~GH~H~~ 302 (402)
.+ . ..|+. ..|.+-.+|++++.||.|..
T Consensus 236 ---~~-~---aen~~--~~l~~v~gID~Il~GHsH~~ 263 (649)
T PRK09420 236 ---KA-M---AENSV--YYLSEVPGIDAIMFGHSHAV 263 (649)
T ss_pred ---cc-c---ccchh--HHHhcCCCCCEEEeCCCCcc
Confidence 00 0 01221 22444568999999999983
No 84
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=98.30 E-value=1.6e-06 Score=76.08 Aligned_cols=88 Identities=19% Similarity=0.239 Sum_probs=54.4
Q ss_pred eEEEEEeccCCcCCCCCCC-CCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCCh--hhHHHHHHHHHhHh
Q 015684 44 FKILQVADMHFANGKTTPC-LDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDA--TDAAKSLNAAFAPA 120 (402)
Q Consensus 44 ~~i~~iSDlH~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~--~~~~~~~~~~l~~~ 120 (402)
-+.+++||+|++....-.- .-..|. +...++.+.+.++++.++|+-||+.||+-.+.+. ...+.....+++.+
T Consensus 20 ~~~lVvADlHlG~e~~~~r~Gi~lP~----~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~ 95 (235)
T COG1407 20 GRTLVVADLHLGYEESLARRGINLPR----YQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELL 95 (235)
T ss_pred CcEEEEEecccchhHHHHhcCcccCc----hhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHh
Confidence 4679999999996643110 011111 1234556667778889999999999994444432 23334444444433
Q ss_pred HhCCCCEEEEcCCCCCC
Q 015684 121 IASNIPWVAVLGNHDQE 137 (402)
Q Consensus 121 ~~~~iP~~~v~GNHD~~ 137 (402)
... -|.++.||||..
T Consensus 96 ~~~--evi~i~GNHD~~ 110 (235)
T COG1407 96 DER--EVIIIRGNHDNG 110 (235)
T ss_pred ccC--cEEEEeccCCCc
Confidence 222 599999999974
No 85
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.26 E-value=0.0001 Score=76.95 Aligned_cols=223 Identities=21% Similarity=0.205 Sum_probs=100.4
Q ss_pred ceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCC-CEEEEcCCccCCCChhhHHHHH--------
Q 015684 43 EFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKP-DLIVFTGDNIFGFDATDAAKSL-------- 113 (402)
Q Consensus 43 ~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p-D~vv~~GDli~~~~~~~~~~~~-------- 113 (402)
.++|++++|+|-.-.....+.+ .+.. ...-.++.. +.+.++++.+ -++|-+||++.+..-...+...
T Consensus 115 ~LtIL~TnDiHg~l~~~dy~~~-~~~~--~~GlaRlAt-lI~~~Rae~~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~ 190 (814)
T PRK11907 115 DVRILSTTDLHTNLVNYDYYQD-KPSQ--TLGLAKTAV-LIEEAKKENPNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQ 190 (814)
T ss_pred EEEEEEEEeecCCccccccccc-Cccc--cccHHHHHH-HHHHHHHhCCCEEEEecCCCCCCCcccchhhhccccccCcc
Confidence 6999999999976332211111 0000 011223322 3333344444 4788999966554211111000
Q ss_pred HHHHhHhHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHhcCCcc--cccC-CCCCccccccccceEE-e--ccCCCCCCCC
Q 015684 114 NAAFAPAIASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTL--SQVN-PSDAHIIDGFGNYNLE-I--GGVKGSGFEN 187 (402)
Q Consensus 114 ~~~l~~~~~~~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~--~~~~-p~~~~~~~g~~~y~~~-~--~~~~~~~~~~ 187 (402)
.-.+..+...+. =+.++||||+..+. +.+.+.+....+.+ ..+. ...... .+.-|.+. . ...+|.. .
T Consensus 191 ~P~i~amN~LGy-DA~tLGNHEFDyG~--d~L~~~l~~a~fPvl~ANV~~~~~~~~--~~~PY~I~e~~~~d~~G~~--~ 263 (814)
T PRK11907 191 HPMYAALEALGF-DAGTLGNHEFNYGL--DYLEKVIATANMPIVNANVLDPTTGDF--LYTPYTIVTKTFTDTEGKK--V 263 (814)
T ss_pred hHHHHHHhccCC-CEEEechhhcccCH--HHHHHHHHhCCCCEEEeeeeecCCCCc--cCCCeEEEEEEEecCCCcc--c
Confidence 012222223444 35788999997654 45555555433221 1111 110000 01123322 1 1111100 0
Q ss_pred ceeEEEEEEeCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccCCCccc
Q 015684 188 KSVLNLYFLDSGDYSTVPSVPGYG-WIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTG 266 (402)
Q Consensus 188 ~~~~~l~~lDs~~~~~~~~~~~~g-~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~G 266 (402)
...+.++.+-+............| ..-.+.++.+++...+|+++ ...-+|++.|..+...... .+
T Consensus 264 ~vKIGiIGlvtp~~~~w~~~~l~g~v~f~D~veaa~~~v~~Lr~~---------GaDvIIaLsH~G~~~d~~~-----~~ 329 (814)
T PRK11907 264 TLNIGITGIVPPQILNWDKANLEGKVIVRDAVEAVRDIIPTMRAA---------GADIVLVLSHSGIGDDQYE-----VG 329 (814)
T ss_pred ceEEEEEEeCchhhhhcccccccCCeEECCHHHHHHHHHHHHHhc---------CCCEEEEEeCCCccccccc-----cc
Confidence 122556666442111100000011 12234456677777777752 4667889999876431000 00
Q ss_pred ccCCcCCCCCCChHHHHHHHHcCCeeEEEeccCCC
Q 015684 267 VRQEGISSASVNSGFFTTMVAAGDVKAVFTGHDHV 301 (402)
Q Consensus 267 ~~~~~~~~~~~~~~~l~~l~~~~~v~~v~~GH~H~ 301 (402)
. .|.. ..|.+-.+|++++.||.|.
T Consensus 330 --~-------En~~--~~LA~v~GIDaIvgGHsH~ 353 (814)
T PRK11907 330 --E-------ENVG--YQIASLSGVDAVVTGHSHA 353 (814)
T ss_pred --c-------cchh--hHHhcCCCCCEEEECCCCC
Confidence 0 1222 2244556899999999999
No 86
>PHA02239 putative protein phosphatase
Probab=98.23 E-value=4.8e-06 Score=74.69 Aligned_cols=70 Identities=29% Similarity=0.383 Sum_probs=43.2
Q ss_pred eEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhc--CCCEEEEcCCccCCCChhhHHHHHHHHHhHhH
Q 015684 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAE--KPDLIVFTGDNIFGFDATDAAKSLNAAFAPAI 121 (402)
Q Consensus 44 ~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~ 121 (402)
||+++|||+|-. ...++.+.+.++.. ..|.||++||++.. + +...+.+...++ +.
T Consensus 1 m~~~~IsDIHG~--------------------~~~l~~ll~~i~~~~~~~d~li~lGD~iDr-G-~~s~~v~~~l~~-~~ 57 (235)
T PHA02239 1 MAIYVVPDIHGE--------------------YQKLLTIMDKINNERKPEETIVFLGDYVDR-G-KRSKDVVNYIFD-LM 57 (235)
T ss_pred CeEEEEECCCCC--------------------HHHHHHHHHHHhhcCCCCCEEEEecCcCCC-C-CChHHHHHHHHH-Hh
Confidence 689999999931 12234444544332 35999999996554 3 223333433333 22
Q ss_pred hCCCCEEEEcCCCCC
Q 015684 122 ASNIPWVAVLGNHDQ 136 (402)
Q Consensus 122 ~~~iP~~~v~GNHD~ 136 (402)
..+.++++++||||.
T Consensus 58 ~~~~~~~~l~GNHE~ 72 (235)
T PHA02239 58 SNDDNVVTLLGNHDD 72 (235)
T ss_pred hcCCCeEEEECCcHH
Confidence 345689999999996
No 87
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.18 E-value=0.00028 Score=64.00 Aligned_cols=63 Identities=14% Similarity=0.273 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHhc
Q 015684 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQESTLSREGVMKHIVTL 152 (402)
Q Consensus 80 ~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GNHD~~~~~~~~~~~~~~~~~ 152 (402)
+.+.+..++.++|++|..||...+.... . . +..+.+...++-++.+ |||++... ++.+++...
T Consensus 19 ~~l~~lk~~~~~D~vi~NgEn~~gg~gl-~-~---~~~~~L~~~G~D~iTl-GNH~fD~g----el~~~l~~~ 81 (255)
T cd07382 19 EHLPKLKKEYKIDFVIANGENAAGGKGI-T-P---KIAKELLSAGVDVITM-GNHTWDKK----EILDFIDEE 81 (255)
T ss_pred HHHHHHHHHCCCCEEEECCccccCCCCC-C-H---HHHHHHHhcCCCEEEe-cccccCcc----hHHHHHhcC
Confidence 4444554557899999999976654111 1 1 2233333467775544 99998655 344555443
No 88
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=98.17 E-value=0.00021 Score=73.45 Aligned_cols=102 Identities=19% Similarity=0.163 Sum_probs=49.0
Q ss_pred ceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcC-CCEEEEcCCccCCCChhhHHHHH--------
Q 015684 43 EFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEK-PDLIVFTGDNIFGFDATDAAKSL-------- 113 (402)
Q Consensus 43 ~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-pD~vv~~GDli~~~~~~~~~~~~-------- 113 (402)
+++|++.+|+|-.-.....+.+ .+.. ...-.++.. +.+.++++. --++|-+||++.+..-. .+...
T Consensus 2 ~l~Il~TnDlH~~l~~~dy~~~-~~~~--~~Glar~at-li~~~R~e~~n~lllD~GD~~qGsp~~-~~~~~~~~~~~~~ 76 (626)
T TIGR01390 2 DLRIVETTDLHTNLMDYDYYKD-KPTD--KFGLTRTAT-LIKQARAEVKNSVLVDNGDLIQGSPLG-DYMAAQGLKAGQM 76 (626)
T ss_pred eEEEEEEcCCccCccCCcccCC-CCCC--CcCHHHHHH-HHHHHHhhCCCeEEEECCCcCCCccch-hhhhhccccCCCc
Confidence 5899999999976433211111 0100 011122322 333333333 35788899966554221 11110
Q ss_pred HHHHhHhHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHhc
Q 015684 114 NAAFAPAIASNIPWVAVLGNHDQESTLSREGVMKHIVTL 152 (402)
Q Consensus 114 ~~~l~~~~~~~iP~~~v~GNHD~~~~~~~~~~~~~~~~~ 152 (402)
.-.++.+...+. =+.++||||+..+ .+.+.+.+...
T Consensus 77 ~p~~~~mN~lgy-Da~tlGNHEFd~G--~~~L~~~~~~a 112 (626)
T TIGR01390 77 HPVYKAMNLLKY-DVGNLGNHEFNYG--LPFLKQAIAAA 112 (626)
T ss_pred ChHHHHHhhcCc-cEEeccccccccc--HHHHHHHHHhC
Confidence 011222222344 3578899998654 34555555443
No 89
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=98.11 E-value=8.1e-06 Score=74.87 Aligned_cols=67 Identities=21% Similarity=0.229 Sum_probs=42.3
Q ss_pred eEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHH-hcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHh
Q 015684 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMIS-AEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIA 122 (402)
Q Consensus 44 ~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~-~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~ 122 (402)
|++++|||+|-. ...++.+.+.+. ..++|.++++||+|. .| ++..+.+. .+ .+
T Consensus 1 M~~~vIGDIHG~--------------------~~~l~~ll~~~~~~~~~D~li~lGDlVd-rG-p~s~~vl~-~l---~~ 54 (275)
T PRK00166 1 MATYAIGDIQGC--------------------YDELQRLLEKIDFDPAKDTLWLVGDLVN-RG-PDSLEVLR-FV---KS 54 (275)
T ss_pred CcEEEEEccCCC--------------------HHHHHHHHHhcCCCCCCCEEEEeCCccC-CC-cCHHHHHH-HH---Hh
Confidence 579999999942 222333333332 246899999999554 44 33333332 22 23
Q ss_pred CCCCEEEEcCCCCC
Q 015684 123 SNIPWVAVLGNHDQ 136 (402)
Q Consensus 123 ~~iP~~~v~GNHD~ 136 (402)
.+.++.+|.||||.
T Consensus 55 l~~~~~~VlGNHD~ 68 (275)
T PRK00166 55 LGDSAVTVLGNHDL 68 (275)
T ss_pred cCCCeEEEecChhH
Confidence 45679999999997
No 90
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=98.06 E-value=8.2e-05 Score=70.98 Aligned_cols=213 Identities=15% Similarity=0.291 Sum_probs=108.8
Q ss_pred HHHHhcCCCEEEEcCCccCCCChhh-------------------------HHHH------HHHHHhHhHhCCCCEEEEcC
Q 015684 84 RMISAEKPDLIVFTGDNIFGFDATD-------------------------AAKS------LNAAFAPAIASNIPWVAVLG 132 (402)
Q Consensus 84 ~~i~~~~pD~vv~~GDli~~~~~~~-------------------------~~~~------~~~~l~~~~~~~iP~~~v~G 132 (402)
+.+.+++|||||++||.|+.++... .|+. ...-|+.+ ...+||++.+-
T Consensus 162 ~~ma~~~~D~viH~GDyIYeyg~~~~~~~~~~~~~~~~~~~~~~ei~TLddYR~rya~y~~D~nLqaa-hA~~Pwi~~WD 240 (522)
T COG3540 162 KTMAKEEPDFVIHLGDYIYEYGPIPDEVSLNSWKNVVVTQHKSKEIETLDDYRGRYAYYKTDENLQAA-HAAFPWIVQWD 240 (522)
T ss_pred HHHHhcCCCEEEEcCCeeeccCCcccccccccccccccCCCCCcceeeHHHHhhHHhhhcccHHHHHh-hccCCEEEEec
Confidence 3455688999999999999886321 1110 11122222 25789999999
Q ss_pred CCCCCCCCCHHH-------------------HHHHHHhcCCcccccCCCCCccccccccceEEeccCCCCCCCCceeEEE
Q 015684 133 NHDQESTLSREG-------------------VMKHIVTLKNTLSQVNPSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNL 193 (402)
Q Consensus 133 NHD~~~~~~~~~-------------------~~~~~~~~~~~~~~~~p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l 193 (402)
.||..++..... ...++...|.-.....+ .+.-+-++.++ +.+.+
T Consensus 241 DHEv~NN~~~~~~~nD~~~~~k~~~~r~a~A~qAyyE~mPiR~~~~p~------~~~lYR~~tyG----------~La~~ 304 (522)
T COG3540 241 DHEVANNWSNSIDENDSRYDEKDFVLRAAAARQAYYEHMPIRYSSLPT------DGRLYRSFTYG----------PLADL 304 (522)
T ss_pred cccccccccccccccCCCCChHHHHHHHHHHHHHHHHhCccccccCCc------cceeeeeeccc----------cccce
Confidence 999876543210 11122111111111100 11112223333 34789
Q ss_pred EEEeCCCCCCCC----CC---------CCCCCCCHHHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhccc
Q 015684 194 YFLDSGDYSTVP----SV---------PGYGWIKPSQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFD 260 (402)
Q Consensus 194 ~~lDs~~~~~~~----~~---------~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~ 260 (402)
.+||+..|.... +. .....+...|.+||+..|... +..|.|+..-.|+.......
T Consensus 305 ~~LDtR~YR~dqp~~dg~~~~~q~~~~~~~~mlG~~QeqWLk~~L~~S------------katWnVia~q~~~~~~~~d~ 372 (522)
T COG3540 305 FVLDTRSYRTDQPCGDGNPPNCQAVAGSAATMLGEQQEQWLKRGLGAS------------KATWNVIAQQMPLGLVVFDG 372 (522)
T ss_pred eeeehhhhccccccCCCCcchhhhhhCccccchhhHHHHHHHhhhhhc------------chhhhhhhhhcceeEeecCC
Confidence 999998876221 11 123457889999999997753 45577777777763311000
Q ss_pred CCCcccc--cCCcCCCCCCChHHHHHHHHcCCee--EEEeccCCCCcccccC--C--------CeeEEecCCccCCCCCC
Q 015684 261 QSNFTGV--RQEGISSASVNSGFFTTMVAAGDVK--AVFTGHDHVNDFCGRL--T--------GIQLCYGGGFGYHAYGK 326 (402)
Q Consensus 261 ~~~~~G~--~~~~~~~~~~~~~~l~~l~~~~~v~--~v~~GH~H~~~~~~~~--~--------gi~~~~~~~~g~~~y~~ 326 (402)
.....|. ..++..-.....+.+-.+++..++. ++|.|.+|. .+...+ + -.+-..+++...++||+
T Consensus 373 ~~a~~~~~a~~D~wdGy~~~RerLl~fi~~~~~~N~V~LtgDvH~-~wA~~l~~d~a~~~~~~~f~Efv~tsi~sG~~gp 451 (522)
T COG3540 373 SPATEGQEANADGWDGYPAGRERLLRFIADRKIRNTVVLTGDVHY-SWAHDLDPDFAQFEDFAPFWEFVSTSINSGGFGP 451 (522)
T ss_pred CccccCccccccCcCCCcccHHHHHHHHHhcCCCCcEEEechhHH-HHHhhcCcchhcccccCceeeEeeccCcCCCcCC
Confidence 0000000 0011111112334444555544444 999999997 343322 1 12333445556677765
No 91
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=97.99 E-value=2.7e-05 Score=66.98 Aligned_cols=56 Identities=25% Similarity=0.307 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCCEEEEcCCccCCCChh--hH----HHHHHHHHhHhH---------------hCCCCEEEEcCCCCC
Q 015684 80 AFINRMISAEKPDLIVFTGDNIFGFDAT--DA----AKSLNAAFAPAI---------------ASNIPWVAVLGNHDQ 136 (402)
Q Consensus 80 ~~l~~~i~~~~pD~vv~~GDli~~~~~~--~~----~~~~~~~l~~~~---------------~~~iP~~~v~GNHD~ 136 (402)
.....+....+||.|++.||++. .+.. ++ +..+.+.+-.-. ..++|++.|+||||.
T Consensus 34 ~~~~~~~~~l~Pd~V~fLGDLfd-~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDI 110 (193)
T cd08164 34 HIVSMMQFWLKPDAVVVLGDLFS-SQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHDV 110 (193)
T ss_pred HHHHHHHHhcCCCEEEEeccccC-CCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcccC
Confidence 33444445579999999999664 4432 11 122222221100 014899999999998
No 92
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=97.96 E-value=2.6e-05 Score=68.86 Aligned_cols=46 Identities=22% Similarity=0.128 Sum_probs=28.5
Q ss_pred cCCCEEEEcCCccCCCChhhHHHHHH---HHHhHhHhCCCCEEEEcCCCCC
Q 015684 89 EKPDLIVFTGDNIFGFDATDAAKSLN---AAFAPAIASNIPWVAVLGNHDQ 136 (402)
Q Consensus 89 ~~pD~vv~~GDli~~~~~~~~~~~~~---~~l~~~~~~~iP~~~v~GNHD~ 136 (402)
.+.|.+|++||++ +.+. ...+.+. +.-....+.+.++++++||||.
T Consensus 31 ~~~d~lv~lGD~v-drG~-~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~ 79 (208)
T cd07425 31 GGSTHLVQLGDIF-DRGP-DVIEILWLLYKLEQEAAKAGGKVHFLLGNHEL 79 (208)
T ss_pred CCCcEEEEECCCc-CCCc-CHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcH
Confidence 3689999999955 4442 2222222 2211222356789999999997
No 93
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=97.89 E-value=3.3e-05 Score=68.25 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=38.8
Q ss_pred EEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHh-cCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhC
Q 015684 45 KILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISA-EKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIAS 123 (402)
Q Consensus 45 ~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~-~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~ 123 (402)
||+++||+|-. ...++.+.+.+.. .++|.++++||++ +.+. ...+ .++.+..
T Consensus 2 ri~~isDiHg~--------------------~~~l~~~l~~~~~~~~~d~~~~~GD~v-~~g~-~~~~----~~~~l~~- 54 (207)
T cd07424 2 RDFVVGDIHGH--------------------YSLLQKALDAVGFDPARDRLISVGDLI-DRGP-ESLA----CLELLLE- 54 (207)
T ss_pred CEEEEECCCCC--------------------HHHHHHHHHHcCCCCCCCEEEEeCCcc-cCCC-CHHH----HHHHHhc-
Confidence 68999999921 1223333343332 4689999999955 4432 2222 2222222
Q ss_pred CCCEEEEcCCCCC
Q 015684 124 NIPWVAVLGNHDQ 136 (402)
Q Consensus 124 ~iP~~~v~GNHD~ 136 (402)
.+++++.||||.
T Consensus 55 -~~~~~v~GNhe~ 66 (207)
T cd07424 55 -PWFHAVRGNHEQ 66 (207)
T ss_pred -CCEEEeECCChH
Confidence 368999999996
No 94
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=97.84 E-value=0.0037 Score=56.91 Aligned_cols=71 Identities=20% Similarity=0.248 Sum_probs=43.6
Q ss_pred eEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHH-HHHHHHHHhcCCCEEEEcCCccCCC-ChhhHHHHHHHHHhHhH
Q 015684 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTT-AFINRMISAEKPDLIVFTGDNIFGF-DATDAAKSLNAAFAPAI 121 (402)
Q Consensus 44 ~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~i~~~~pD~vv~~GDli~~~-~~~~~~~~~~~~l~~~~ 121 (402)
|||+++.|+=-..+ ...+ +.+.++-++.++|++|..||+..+. +.+ . +..+.+.
T Consensus 1 m~ilfiGDi~G~~G------------------r~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~--~----~~~~~L~ 56 (266)
T TIGR00282 1 IKFLFIGDVYGKAG------------------RKIVKNNLPQLKSKYQADLVIANGENTTHGKGLT--L----KIYEFLK 56 (266)
T ss_pred CeEEEEEecCCHHH------------------HHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCC--H----HHHHHHH
Confidence 68999999863221 1122 3333444456899999999966543 222 1 2333344
Q ss_pred hCCCCEEEEcCCCCCCCC
Q 015684 122 ASNIPWVAVLGNHDQEST 139 (402)
Q Consensus 122 ~~~iP~~~v~GNHD~~~~ 139 (402)
+.++-++.+ |||.+...
T Consensus 57 ~~GvDviT~-GNH~~Dkg 73 (266)
T TIGR00282 57 QSGVNYITM-GNHTWFQK 73 (266)
T ss_pred hcCCCEEEc-cchhccCc
Confidence 578887766 99998654
No 95
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=97.76 E-value=8.7e-05 Score=66.86 Aligned_cols=42 Identities=29% Similarity=0.285 Sum_probs=26.2
Q ss_pred CCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCCCCC
Q 015684 91 PDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQ 136 (402)
Q Consensus 91 pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GNHD~ 136 (402)
.|.+|++||+|.... ...+.+ +.+..+.. .-.++++.||||.
T Consensus 38 ~d~lv~lGDlIDrG~--~s~evl-~~l~~l~~-~~~~~~v~GNHE~ 79 (234)
T cd07423 38 GRRAVFVGDLVDRGP--DSPEVL-RLVMSMVA-AGAALCVPGNHDN 79 (234)
T ss_pred CCEEEEECCccCCCC--CHHHHH-HHHHHHhh-CCcEEEEECCcHH
Confidence 689999999665432 233333 23333222 2358899999996
No 96
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=97.72 E-value=8e-05 Score=66.29 Aligned_cols=68 Identities=25% Similarity=0.185 Sum_probs=41.3
Q ss_pred CCceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhc-CCCEEEEcCCccCCCChhhHHHHHHHHHhH
Q 015684 41 NGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAE-KPDLIVFTGDNIFGFDATDAAKSLNAAFAP 119 (402)
Q Consensus 41 ~~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~pD~vv~~GDli~~~~~~~~~~~~~~~l~~ 119 (402)
+.--|+.++||+|-. ...++.+.+.+... +.|.++++||+|. .| ++..+.+. .+.
T Consensus 14 ~~~~ri~vigDIHG~--------------------~~~L~~lL~~i~~~~~~D~li~lGDlvD-rG-p~s~~vl~-~l~- 69 (218)
T PRK11439 14 HQWRHIWLVGDIHGC--------------------FEQLMRKLRHCRFDPWRDLLISVGDLID-RG-PQSLRCLQ-LLE- 69 (218)
T ss_pred CCCCeEEEEEcccCC--------------------HHHHHHHHHhcCCCcccCEEEEcCcccC-CC-cCHHHHHH-HHH-
Confidence 334499999999942 23334444444333 6799999999554 43 33333332 222
Q ss_pred hHhCCCCEEEEcCCCCC
Q 015684 120 AIASNIPWVAVLGNHDQ 136 (402)
Q Consensus 120 ~~~~~iP~~~v~GNHD~ 136 (402)
+ ..+++|.||||.
T Consensus 70 --~--~~~~~v~GNHE~ 82 (218)
T PRK11439 70 --E--HWVRAVRGNHEQ 82 (218)
T ss_pred --c--CCceEeeCchHH
Confidence 2 246789999995
No 97
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=97.70 E-value=0.00013 Score=64.93 Aligned_cols=70 Identities=23% Similarity=0.280 Sum_probs=41.4
Q ss_pred cCCCceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHH-hcCCCEEEEcCCccCCCChhhHHHHHHHHH
Q 015684 39 RQNGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMIS-AEKPDLIVFTGDNIFGFDATDAAKSLNAAF 117 (402)
Q Consensus 39 ~~~~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~-~~~pD~vv~~GDli~~~~~~~~~~~~~~~l 117 (402)
+.+..=||+++||+|-. ...++.+.+.+. ..+.|.+++.||++ +.| +...+.+ +.+
T Consensus 10 ~~~~~~ri~visDiHg~--------------------~~~l~~~l~~~~~~~~~d~l~~lGD~v-drG-~~~~~~l-~~l 66 (218)
T PRK09968 10 NAHHYRHIWVVGDIHGE--------------------YQLLQSRLHQLSFCPETDLLISVGDNI-DRG-PESLNVL-RLL 66 (218)
T ss_pred cCCCCCeEEEEEeccCC--------------------HHHHHHHHHhcCCCCCCCEEEECCCCc-CCC-cCHHHHH-HHH
Confidence 33333499999999942 223333333333 24689999999955 443 2222333 222
Q ss_pred hHhHhCCCCEEEEcCCCCC
Q 015684 118 APAIASNIPWVAVLGNHDQ 136 (402)
Q Consensus 118 ~~~~~~~iP~~~v~GNHD~ 136 (402)
. + -.++++.||||.
T Consensus 67 ~---~--~~~~~v~GNHE~ 80 (218)
T PRK09968 67 N---Q--PWFISVKGNHEA 80 (218)
T ss_pred h---h--CCcEEEECchHH
Confidence 2 1 247899999996
No 98
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=97.69 E-value=0.0001 Score=66.92 Aligned_cols=64 Identities=20% Similarity=0.218 Sum_probs=39.4
Q ss_pred EEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHh-cCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCC
Q 015684 47 LQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISA-EKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNI 125 (402)
Q Consensus 47 ~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~-~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~i 125 (402)
.+|||+|-. ...++.+.+.+.. .+.|.++++||+|. .| +++.+.+. .+. +.+.
T Consensus 2 yvIGDIHG~--------------------~~~L~~LL~~i~~~~~~D~Li~lGDlVd-RG-p~s~evl~-~l~---~l~~ 55 (257)
T cd07422 2 YAIGDIQGC--------------------YDELQRLLEKINFDPAKDRLWLVGDLVN-RG-PDSLETLR-FVK---SLGD 55 (257)
T ss_pred EEEECCCCC--------------------HHHHHHHHHhcCCCCCCCEEEEecCcCC-CC-cCHHHHHH-HHH---hcCC
Confidence 689999942 2233334443432 36799999999554 44 33333332 222 3445
Q ss_pred CEEEEcCCCCC
Q 015684 126 PWVAVLGNHDQ 136 (402)
Q Consensus 126 P~~~v~GNHD~ 136 (402)
.+.+|.||||.
T Consensus 56 ~v~~VlGNHD~ 66 (257)
T cd07422 56 SAKTVLGNHDL 66 (257)
T ss_pred CeEEEcCCchH
Confidence 78999999997
No 99
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=97.60 E-value=0.00017 Score=65.77 Aligned_cols=67 Identities=19% Similarity=0.198 Sum_probs=40.8
Q ss_pred eEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHH-hcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHh
Q 015684 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMIS-AEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIA 122 (402)
Q Consensus 44 ~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~-~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~ 122 (402)
|++.+|+|+|-. ...++.+.+.++ ..+.|.++++||+|... ++..+.+. .+. +
T Consensus 1 m~~YvIGDIHGc--------------------~daL~~LL~~i~f~~~~D~l~~lGDlVdRG--P~slevL~-~l~---~ 54 (279)
T TIGR00668 1 MATYLIGDLHGC--------------------YDELQALLERVEFDPGQDTLWLTGDLVARG--PGSLEVLR-YVK---S 54 (279)
T ss_pred CcEEEEEcccCC--------------------HHHHHHHHHHhCcCCCCCEEEEeCCccCCC--CCHHHHHH-HHH---h
Confidence 467899999942 223344444443 23579999999955543 33333332 222 2
Q ss_pred CCCCEEEEcCCCCC
Q 015684 123 SNIPWVAVLGNHDQ 136 (402)
Q Consensus 123 ~~iP~~~v~GNHD~ 136 (402)
.+..+.+|.||||.
T Consensus 55 l~~~~~~VlGNHD~ 68 (279)
T TIGR00668 55 LGDAVRLVLGNHDL 68 (279)
T ss_pred cCCCeEEEEChhHH
Confidence 34457789999996
No 100
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=97.54 E-value=0.00024 Score=64.46 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=26.7
Q ss_pred CCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCCCCC
Q 015684 91 PDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQ 136 (402)
Q Consensus 91 pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GNHD~ 136 (402)
-|.+|++||+|.. | +++.+.+..++ .+. ..-+++++.||||.
T Consensus 37 ~d~li~lGDliDR-G-p~S~~vl~~~~-~~~-~~~~~~~l~GNHE~ 78 (245)
T PRK13625 37 QRKLAFVGDLTDR-G-PHSLRMIEIVW-ELV-EKKAAYYVPGNHCN 78 (245)
T ss_pred CCEEEEECcccCC-C-cChHHHHHHHH-HHh-hCCCEEEEeCccHH
Confidence 4799999996653 3 33444443332 222 23479999999985
No 101
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=97.52 E-value=0.00021 Score=63.88 Aligned_cols=54 Identities=17% Similarity=0.216 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCCCCC
Q 015684 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQ 136 (402)
Q Consensus 80 ~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GNHD~ 136 (402)
..+.+.+...++|.+|++||++.. +. ...+.+. .+..+.....+++++.||||.
T Consensus 14 ~~~l~~~~~~~~d~li~lGD~vdr-g~-~~~~~l~-~l~~~~~~~~~~~~l~GNHe~ 67 (225)
T cd00144 14 LRLLEKIGFPPNDKLIFLGDYVDR-GP-DSVEVID-LLLALKILPDNVILLRGNHED 67 (225)
T ss_pred HHHHHHhCCCCCCEEEEECCEeCC-CC-CcHHHHH-HHHHhcCCCCcEEEEccCchh
Confidence 344444444678999999995554 32 2223332 222221114579999999997
No 102
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=97.48 E-value=0.00039 Score=62.88 Aligned_cols=78 Identities=13% Similarity=0.204 Sum_probs=51.3
Q ss_pred EEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHh-----------cCCCEEEEcCCccCCCCh-------
Q 015684 45 KILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISA-----------EKPDLIVFTGDNIFGFDA------- 106 (402)
Q Consensus 45 ~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~-----------~~pD~vv~~GDli~~~~~------- 106 (402)
.|+.+||+|++.... ....++.+.+.+.. .+...||++||.+.+.+.
T Consensus 1 ~i~~vSgL~ig~~~~---------------~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~ 65 (257)
T cd07387 1 YIALVSGLGLGGNAE---------------SSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTK 65 (257)
T ss_pred CEEEEcccccCCCcc---------------chHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhh
Confidence 378999999997642 12334555565552 244579999997775532
Q ss_pred ------------hhHHHHHHHHHhHhHhCCCCEEEEcCCCCCCC
Q 015684 107 ------------TDAAKSLNAAFAPAIASNIPWVAVLGNHDQES 138 (402)
Q Consensus 107 ------------~~~~~~~~~~l~~~~~~~iP~~~v~GNHD~~~ 138 (402)
.+.++.+.+.+..+. ..+|+.++|||||-..
T Consensus 66 ~~~~~~~~~~~~~~~~~~ld~~l~~l~-~~i~V~imPG~~Dp~~ 108 (257)
T cd07387 66 ARYLTKKSSAASVEAVKELDNFLSQLA-SSVPVDLMPGEFDPAN 108 (257)
T ss_pred hhccccccchhhHHHHHHHHHHHHhhh-cCCeEEECCCCCCccc
Confidence 123444555555443 5899999999999854
No 103
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=97.46 E-value=0.00036 Score=62.25 Aligned_cols=43 Identities=26% Similarity=0.284 Sum_probs=27.1
Q ss_pred CCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCCCCC
Q 015684 90 KPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQ 136 (402)
Q Consensus 90 ~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GNHD~ 136 (402)
..|.+|++||+|... +++.+.+.. +..+... -.+.++.||||.
T Consensus 33 ~~d~lvflGD~IDRG--p~S~~vl~~-l~~l~~~-~~~~~l~GNHE~ 75 (222)
T cd07413 33 PERQVVFLGDLIDRG--PEIRELLEI-VKSMVDA-GHALAVMGNHEF 75 (222)
T ss_pred CCCEEEEeCcccCCC--CCHHHHHHH-HHHhhcC-CCEEEEEccCcH
Confidence 468999999965543 334444433 3323222 268999999996
No 104
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=97.41 E-value=0.00072 Score=61.85 Aligned_cols=69 Identities=19% Similarity=0.203 Sum_probs=40.0
Q ss_pred EEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHh------cCCCEEEEcCCccCCCChhhHHHHHHHHHh
Q 015684 45 KILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISA------EKPDLIVFTGDNIFGFDATDAAKSLNAAFA 118 (402)
Q Consensus 45 ~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~------~~pD~vv~~GDli~~~~~~~~~~~~~~~l~ 118 (402)
++++|+|+|-. ...++.+.+.+.. ...+.+|++||++.... +..+.+. .+.
T Consensus 3 ~iyaIGDIHG~--------------------~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGP--dS~eVld-~L~ 59 (304)
T cd07421 3 VVICVGDIHGY--------------------ISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGP--ETRKVID-FLI 59 (304)
T ss_pred eEEEEEeccCC--------------------HHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCC--CHHHHHH-HHH
Confidence 68999999943 2333444444432 23578999999655432 3333332 222
Q ss_pred HhHhCC--CCEEEEcCCCCC
Q 015684 119 PAIASN--IPWVAVLGNHDQ 136 (402)
Q Consensus 119 ~~~~~~--iP~~~v~GNHD~ 136 (402)
.+.... ..++++.||||.
T Consensus 60 ~l~~~~~~~~vv~LrGNHE~ 79 (304)
T cd07421 60 SLPEKHPKQRHVFLCGNHDF 79 (304)
T ss_pred HhhhcccccceEEEecCChH
Confidence 222222 257899999995
No 105
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=97.39 E-value=0.0022 Score=63.17 Aligned_cols=98 Identities=19% Similarity=0.153 Sum_probs=49.3
Q ss_pred ceeecCCCceEEEEEeccCCcCCCCCCCCCCCcccccCCCC-hhHHHHHHHHHHhcCCCEE-EEcCCccCCCChhhHHH-
Q 015684 35 KLRFRQNGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSD-LNTTAFINRMISAEKPDLI-VFTGDNIFGFDATDAAK- 111 (402)
Q Consensus 35 ~l~~~~~~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~i~~~~pD~v-v~~GDli~~~~~~~~~~- 111 (402)
.++-...+..+|.|.||+|-.-....+-.+ ...++.+ ......+.+.++...+|++ +=+||+-.+.+..+.+.
T Consensus 34 ii~~~~~~~~nf~hTtdthG~~~~h~~~~~----~~~~~G~f~~f~~~~k~~a~~~~~dvl~~dtGD~hdGtg~sd~~~~ 109 (602)
T KOG4419|consen 34 IIRHLNWGQPNFIHTTDTHGWLGSHLRDAR----YDADFGDFAAFALRMKELADRKGVDVLLVDTGDLHDGTGLSDATDP 109 (602)
T ss_pred heeccccccccceeeccccccccccccchh----hhhhhhhHHHHHHHHHHHHhccCCCEEEEecccccCCceeeeccCC
Confidence 344455689999999999977542111000 0011122 2233445555555678765 55799443333222111
Q ss_pred --HHHHHHhHhHhCCCCEEEEcCCCCCCCC
Q 015684 112 --SLNAAFAPAIASNIPWVAVLGNHDQEST 139 (402)
Q Consensus 112 --~~~~~l~~~~~~~iP~~~v~GNHD~~~~ 139 (402)
.+...+..+... =..+.|||+++..
T Consensus 110 ~g~~t~~l~~~~~y---D~l~lGNHEl~~~ 136 (602)
T KOG4419|consen 110 PGIYTNFLFKMMPY---DILTLGNHELYQA 136 (602)
T ss_pred chHHHHHHHhcCcc---chhhhcchhhhhh
Confidence 112222222111 3457799998754
No 106
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=97.17 E-value=0.00095 Score=64.33 Aligned_cols=81 Identities=15% Similarity=0.221 Sum_probs=51.9
Q ss_pred CceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHH-----hcCCCEEEEcCCccCCCCh----------
Q 015684 42 GEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMIS-----AEKPDLIVFTGDNIFGFDA---------- 106 (402)
Q Consensus 42 ~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~-----~~~pD~vv~~GDli~~~~~---------- 106 (402)
.+++++++||+|.|...-. .+....+.+.++ +.+..+++++||.+.+-+.
T Consensus 224 e~v~v~~isDih~GSk~F~---------------~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i 288 (481)
T COG1311 224 ERVYVALISDIHRGSKEFL---------------EDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVI 288 (481)
T ss_pred cceEEEEEeeeecccHHHH---------------HHHHHHHHHHhcCCcccccceEEEEEecccccccccccCccccccc
Confidence 5689999999999864321 111222333332 2356899999997765541
Q ss_pred ---hhHHHHHHHHHhHhHhCCCCEEEEcCCCCCCC
Q 015684 107 ---TDAAKSLNAAFAPAIASNIPWVAVLGNHDQES 138 (402)
Q Consensus 107 ---~~~~~~~~~~l~~~~~~~iP~~~v~GNHD~~~ 138 (402)
.++|+.+.+.|... -..+.+++.|||||...
T Consensus 289 ~di~~qy~~~A~~L~~v-p~~I~v~i~PGnhDa~r 322 (481)
T COG1311 289 ADIYEQYEELAEFLDQV-PEHIKVFIMPGNHDAVR 322 (481)
T ss_pred ccchHHHHHHHHHHhhC-CCCceEEEecCCCCccc
Confidence 13566666666532 24677999999999854
No 107
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=97.02 E-value=0.0064 Score=54.42 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhh-hccc---CCCc--ccccCCcCCCCCCChHHHHHHHHcCC
Q 015684 217 QQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEF-AYFD---QSNF--TGVRQEGISSASVNSGFFTTMVAAGD 290 (402)
Q Consensus 217 q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~-~~~~---~~~~--~G~~~~~~~~~~~~~~~l~~l~~~~~ 290 (402)
.+-|++..|.... ..++|+++|.|+-...+ .+.| ...+ .|.....+ .+......+...++-+|
T Consensus 254 slpwlk~dl~~~a----------adgrpv~LfqhyGwdtfsteawdpAsrT~Dd~Gsgaphw-w~a~er~all~~lqGYN 322 (392)
T COG5555 254 SLPWLKVDLIYSA----------ADGRPVYLFQHYGWDTFSTEAWDPASRTLDDTGSGAPHW-WPAPERGALLFFLQGYN 322 (392)
T ss_pred cCcceeccceeec----------cCCCceeehhhhCccceeccccCchhcccccCCCCCCCC-CCCCCcchHHHhhcCce
Confidence 4678887765332 37899999999954322 2222 1111 11111111 12223344555567789
Q ss_pred eeEEEeccCCCC
Q 015684 291 VKAVFTGHDHVN 302 (402)
Q Consensus 291 v~~v~~GH~H~~ 302 (402)
|...|+||.|.-
T Consensus 323 vvg~fhGhkhd~ 334 (392)
T COG5555 323 VVGTFHGHKHDF 334 (392)
T ss_pred eEEecccccccc
Confidence 999999999974
No 108
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=96.97 E-value=0.044 Score=49.46 Aligned_cols=72 Identities=14% Similarity=0.087 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccCCCcccccCCcCCCCCCCh-HHHHHHHHcCCeeEEEe
Q 015684 218 QFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNS-GFFTTMVAAGDVKAVFT 296 (402)
Q Consensus 218 ~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~G~~~~~~~~~~~~~-~~l~~l~~~~~v~~v~~ 296 (402)
.+-+++.++++++ ....+|+.+|...... ..|.... ++...+++. ++++|+.
T Consensus 161 ~~~~~~~i~~lr~----------~~D~vIv~~H~G~e~~----------------~~p~~~~~~la~~l~~~-G~D~IiG 213 (239)
T cd07381 161 LERIAADIAEAKK----------KADIVIVSLHWGVEYS----------------YYPTPEQRELARALIDA-GADLVIG 213 (239)
T ss_pred HHHHHHHHHHHhh----------cCCEEEEEecCcccCC----------------CCCCHHHHHHHHHHHHC-CCCEEEc
Confidence 3446666666664 3567888888744110 0010111 233344454 5999999
Q ss_pred ccCCCCcccccCCCeeEEec
Q 015684 297 GHDHVNDFCGRLTGIQLCYG 316 (402)
Q Consensus 297 GH~H~~~~~~~~~gi~~~~~ 316 (402)
||.|...-.-.++|..++|+
T Consensus 214 ~H~Hv~q~~E~~~~~~I~YS 233 (239)
T cd07381 214 HHPHVLQGIEIYKGKLIFYS 233 (239)
T ss_pred CCCCcCCCeEEECCEEEEEc
Confidence 99999655555677777765
No 109
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=96.87 E-value=0.044 Score=49.47 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=25.1
Q ss_pred HHHHHHHHcCCeeEEEeccCCCCcccccCCCeeEEec
Q 015684 280 GFFTTMVAAGDVKAVFTGHDHVNDFCGRLTGIQLCYG 316 (402)
Q Consensus 280 ~~l~~l~~~~~v~~v~~GH~H~~~~~~~~~gi~~~~~ 316 (402)
++...+++. ++++|+.||.|.......++|..+.|+
T Consensus 196 ~~A~~l~~~-G~DvIiG~H~H~~~~~e~~~~~~I~Ys 231 (239)
T smart00854 196 ELAHALIDA-GADVVIGHHPHVLQPIEIYKGKLIAYS 231 (239)
T ss_pred HHHHHHHHc-CCCEEEcCCCCcCCceEEECCEEEEEc
Confidence 334455554 599999999998655555677776664
No 110
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=96.78 E-value=0.0031 Score=60.08 Aligned_cols=24 Identities=8% Similarity=0.216 Sum_probs=21.3
Q ss_pred CCChHHHHHHHHcCCeeEEEeccC
Q 015684 276 SVNSGFFTTMVAAGDVKAVFTGHD 299 (402)
Q Consensus 276 ~~~~~~l~~l~~~~~v~~v~~GH~ 299 (402)
.-+.+.++.++++.++++++=||.
T Consensus 270 ~FG~~~~~~FL~~n~l~~IIRsHe 293 (377)
T cd07418 270 LWGPDCTEEFLEKNNLKLIIRSHE 293 (377)
T ss_pred ccCHHHHHHHHHHcCCcEEEECCC
Confidence 346788999999999999999999
No 111
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=96.72 E-value=0.025 Score=50.62 Aligned_cols=68 Identities=18% Similarity=0.280 Sum_probs=44.0
Q ss_pred CceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhH
Q 015684 42 GEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAI 121 (402)
Q Consensus 42 ~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~ 121 (402)
+..|++-+||+|--... +. +-..-|+++++|| .+.-+..++...+.+.+-.+
T Consensus 60 ~~~r~VcisdtH~~~~~-----------------------i~---~~p~gDvlihagd-fT~~g~~~ev~~fn~~~gsl- 111 (305)
T KOG3947|consen 60 GYARFVCISDTHELTFD-----------------------IN---DIPDGDVLIHAGD-FTNLGLPEEVIKFNEWLGSL- 111 (305)
T ss_pred CceEEEEecCcccccCc-----------------------cc---cCCCCceEEeccC-CccccCHHHHHhhhHHhccC-
Confidence 56899999999953321 11 2356699999999 77766665555554444321
Q ss_pred hCCCCEEEEcCCCCCCC
Q 015684 122 ASNIPWVAVLGNHDQES 138 (402)
Q Consensus 122 ~~~iP~~~v~GNHD~~~ 138 (402)
...--++|.|||+..-
T Consensus 112 -ph~yKIVIaGNHELtF 127 (305)
T KOG3947|consen 112 -PHEYKIVIAGNHELTF 127 (305)
T ss_pred -cceeeEEEeeccceee
Confidence 1112568899999854
No 112
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=96.56 E-value=0.059 Score=48.17 Aligned_cols=54 Identities=22% Similarity=0.420 Sum_probs=35.7
Q ss_pred HhcCCCEEEEcCCccCCCCh------------------hhHHHHHHH---------HHhHhHhCCCCEEEEcCCCCCCCC
Q 015684 87 SAEKPDLIVFTGDNIFGFDA------------------TDAAKSLNA---------AFAPAIASNIPWVAVLGNHDQEST 139 (402)
Q Consensus 87 ~~~~pD~vv~~GDli~~~~~------------------~~~~~~~~~---------~l~~~~~~~iP~~~v~GNHD~~~~ 139 (402)
.+.+||++|++||.|+.+.. ....+.+.+ .++.+ ...+|++.++-+||+..+
T Consensus 26 ~~~~~d~~l~~GD~IY~d~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Y~~~~~~p~~~~~-~~~~p~~~iwDDHDi~~n 104 (228)
T cd07389 26 SEEDPDLFLHLGDQIYADDVGGLMPALIEGRPLEPAHEALTLEEYRERYRQYRSDPDLQRL-LAQVPTIGIWDDHDIGDN 104 (228)
T ss_pred cccCCCEEEEcCCeecccCCCcccccccCCcCcCCcccccCHHHHHHHHHHHcCCHHHHHH-hhcCCEEEeccccccccc
Confidence 46899999999999999852 111111111 12222 257899999999999765
Q ss_pred CC
Q 015684 140 LS 141 (402)
Q Consensus 140 ~~ 141 (402)
..
T Consensus 105 ~~ 106 (228)
T cd07389 105 WG 106 (228)
T ss_pred cc
Confidence 43
No 113
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=96.50 E-value=0.011 Score=54.43 Aligned_cols=72 Identities=18% Similarity=0.157 Sum_probs=41.6
Q ss_pred eEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhC
Q 015684 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIAS 123 (402)
Q Consensus 44 ~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~ 123 (402)
.++++++|+|-. ...+..+.+.+.....+-+++.||++ +.|. ...+.+...+.-....
T Consensus 28 ~~i~vvGDiHG~--------------------~~~l~~ll~~~~~~~~~~~vfLGD~V-DrG~-~s~e~l~~l~~lk~~~ 85 (271)
T smart00156 28 APVTVCGDIHGQ--------------------FDDLLRLFDLNGPPPDTNYVFLGDYV-DRGP-FSIEVILLLFALKILY 85 (271)
T ss_pred CCEEEEEeCcCC--------------------HHHHHHHHHHcCCCCCceEEEeCCcc-CCCC-ChHHHHHHHHHHHhcC
Confidence 468999999942 12222233333335668999999955 4442 2333433322211123
Q ss_pred CCCEEEEcCCCCCC
Q 015684 124 NIPWVAVLGNHDQE 137 (402)
Q Consensus 124 ~iP~~~v~GNHD~~ 137 (402)
.-.++.+.||||..
T Consensus 86 p~~v~llrGNHE~~ 99 (271)
T smart00156 86 PNRVVLLRGNHESR 99 (271)
T ss_pred CCCEEEEeccccHH
Confidence 34589999999984
No 114
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=96.48 E-value=0.0029 Score=55.91 Aligned_cols=76 Identities=17% Similarity=0.210 Sum_probs=40.9
Q ss_pred EEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHH----hcCCCEEEEcCCccCCCChhh-------HH---H
Q 015684 46 ILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMIS----AEKPDLIVFTGDNIFGFDATD-------AA---K 111 (402)
Q Consensus 46 i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~----~~~pD~vv~~GDli~~~~~~~-------~~---~ 111 (402)
|+++||+|++... ...+.+.+.+. +.+|+.+|++|+++....... .+ .
T Consensus 1 Iv~~Sg~~~~~~~------------------~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~ 62 (209)
T PF04042_consen 1 IVFASGPFLDSDN------------------LSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEE 62 (209)
T ss_dssp EEEEES--CTTT-------------------HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHH
T ss_pred CEEEecCccCCCH------------------hHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccH
Confidence 6899999998432 22344555554 567999999999776543221 11 1
Q ss_pred HHHHHHhHhH---hCCCCEEEEcCCCCCCCC
Q 015684 112 SLNAAFAPAI---ASNIPWVAVLGNHDQEST 139 (402)
Q Consensus 112 ~~~~~l~~~~---~~~iP~~~v~GNHD~~~~ 139 (402)
...+.+.... ...+++.++||+||....
T Consensus 63 ~~~~~~~~~~~~i~~~~~vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 63 DFLKELDSFLESILPSTQVVLVPGPNDPTSS 93 (209)
T ss_dssp HHHHHCHHHHCCCHCCSEEEEE--TTCTT-S
T ss_pred HHHHHHHHHHhhcccccEEEEeCCCcccccc
Confidence 1111111111 157899999999998644
No 115
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=96.41 E-value=0.051 Score=50.46 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=24.0
Q ss_pred CCChHHHHHHHHcCCeeEEEeccCCCCcccc
Q 015684 276 SVNSGFFTTMVAAGDVKAVFTGHDHVNDFCG 306 (402)
Q Consensus 276 ~~~~~~l~~l~~~~~v~~v~~GH~H~~~~~~ 306 (402)
..++..++.|++.-+..++|+.|.|. .|..
T Consensus 204 ~LGSp~~~eLL~~LkP~yWfsAHLH~-KFaA 233 (456)
T KOG2863|consen 204 KLGSPALEELLEDLKPQYWFSAHLHV-KFAA 233 (456)
T ss_pred CcCChHHHHHHHHhCcchhhhhhHhh-HHhh
Confidence 35677788888888899999999998 5543
No 116
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=96.30 E-value=0.016 Score=54.10 Aligned_cols=25 Identities=4% Similarity=0.150 Sum_probs=21.4
Q ss_pred CChHHHHHHHHcCCeeEEEeccCCC
Q 015684 277 VNSGFFTTMVAAGDVKAVFTGHDHV 301 (402)
Q Consensus 277 ~~~~~l~~l~~~~~v~~v~~GH~H~ 301 (402)
-+....+.++++.++++++-||.=.
T Consensus 220 fG~~~~~~Fl~~n~l~~iiR~He~~ 244 (305)
T cd07416 220 YSYRAVCEFLQKNNLLSIIRAHEAQ 244 (305)
T ss_pred cCHHHHHHHHHHcCCeEEEEecccc
Confidence 3567889999999999999999855
No 117
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=96.16 E-value=0.32 Score=43.54 Aligned_cols=164 Identities=20% Similarity=0.188 Sum_probs=73.5
Q ss_pred HHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHhcCCccccc
Q 015684 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQV 159 (402)
Q Consensus 80 ~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~ 159 (402)
+.+.++.++.++||||..|.+.++... -..+.+.+++ +.++-+ ++.|||=+.. .++.+++...+.-+...
T Consensus 17 ~~Lp~L~~~~~~DfVIaNgENaa~G~G-it~~~~~~L~----~~GvDv-iT~GNH~wdk----kei~~~i~~~~~ilRPa 86 (253)
T PF13277_consen 17 EHLPELKEEYGIDFVIANGENAAGGFG-ITPKIAEELF----KAGVDV-ITMGNHIWDK----KEIFDFIDKEPRILRPA 86 (253)
T ss_dssp HHHHHHGG--G-SEEEEE-TTTTTTSS---HHHHHHHH----HHT-SE-EE--TTTTSS----TTHHHHHHH-SSEE--T
T ss_pred HHHHHHHhhcCCCEEEECCcccCCCCC-CCHHHHHHHH----hcCCCE-EecCcccccC----cHHHHHHhcCCCcEECC
Confidence 344444456799999999997665532 2222333333 467775 4789997643 34556665544433222
Q ss_pred C-CCCCccccccccceEEeccCCCCCCCCceeEEEEEEeCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCccc
Q 015684 160 N-PSDAHIIDGFGNYNLEIGGVKGSGFENKSVLNLYFLDSGDYSTVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKPAA 238 (402)
Q Consensus 160 ~-p~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~l~~lDs~~~~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~~~ 238 (402)
+ |. ...|.|+..++..+ ..+-.++-....-.+. +. .-...+++.+++++.
T Consensus 87 N~p~---~~pG~G~~i~~~~g-----------~kv~ViNl~Gr~fm~~------~~-~PF~~~d~~l~~l~~-------- 137 (253)
T PF13277_consen 87 NYPP---GTPGRGYRIFEKNG-----------KKVAVINLMGRVFMPP------ID-CPFRAADRLLEELKE-------- 137 (253)
T ss_dssp TS-T---T-SSBSEEEEEETT-----------EEEEEEEEE--TTS---------S--HHHHHHHHHHH-----------
T ss_pred CCCC---CCCcCcEEEEEECC-----------EEEEEEECcccccCCC------CC-ChHHHHHHHHHhccc--------
Confidence 2 22 24455666666644 3444444311111111 11 234446666666643
Q ss_pred cCCCCCeEEEEecChhhhhcccCCCcccccCCcCCCCCCChHHHHHHHHcCCeeEEEeccCCCCccccc
Q 015684 239 QKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGFFTTMVAAGDVKAVFTGHDHVNDFCGR 307 (402)
Q Consensus 239 ~~~~~~~iv~~H~P~~~~~~~~~~~~~G~~~~~~~~~~~~~~~l~~l~~~~~v~~v~~GH~H~~~~~~~ 307 (402)
....+||=+|---.. | +.--.+.-.++|.+|+.=|+|.+.-..+
T Consensus 138 --~~~~iiVDFHAEaTS--------------E---------K~A~g~~lDGrvsaV~GTHTHVqTaDer 181 (253)
T PF13277_consen 138 --ETDIIIVDFHAEATS--------------E---------KQAMGWYLDGRVSAVVGTHTHVQTADER 181 (253)
T ss_dssp ----SEEEEEEE-S-HH--------------H---------HHHHHHHHBTTBSEEEEESSSS-BS--E
T ss_pred --cCCEEEEEeecCcHH--------------H---------HHHHHHHhCCcEEEEEeCCCCccCchhh
Confidence 455677777763311 0 1112233456899999999998654433
No 118
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=96.08 E-value=0.026 Score=52.95 Aligned_cols=25 Identities=4% Similarity=0.154 Sum_probs=21.6
Q ss_pred CChHHHHHHHHcCCeeEEEeccCCC
Q 015684 277 VNSGFFTTMVAAGDVKAVFTGHDHV 301 (402)
Q Consensus 277 ~~~~~l~~l~~~~~v~~v~~GH~H~ 301 (402)
-+.+....++++.++++++=||.=.
T Consensus 251 FG~~~~~~Fl~~n~l~~IIR~He~v 275 (321)
T cd07420 251 FGPDVTSKVLQKHGLSLLIRSHECK 275 (321)
T ss_pred cCHHHHHHHHHHCCCcEEEEcChhh
Confidence 4667889999999999999999854
No 119
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=95.89 E-value=0.027 Score=52.11 Aligned_cols=58 Identities=9% Similarity=0.094 Sum_probs=34.6
Q ss_pred CChHHHHHHHHcCCeeEEEeccCCCCc-ccccCCCeeEEecCCccCC-CCCCCCCCcceEEEEEe
Q 015684 277 VNSGFFTTMVAAGDVKAVFTGHDHVND-FCGRLTGIQLCYGGGFGYH-AYGKAGWERRARVVVAS 339 (402)
Q Consensus 277 ~~~~~l~~l~~~~~v~~v~~GH~H~~~-~~~~~~gi~~~~~~~~g~~-~y~~~~~~~g~rv~ei~ 339 (402)
-+...++.++++.++++++=||.-..+ +....+|.-+-.-.++.|. .+++ .+-++.++
T Consensus 212 fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~y~~~~~n-----~~a~l~i~ 271 (285)
T cd07415 212 FGQDVVEEFNHNNGLTLICRAHQLVMEGYQWMFDDKLVTVWSAPNYCYRCGN-----VASIMELD 271 (285)
T ss_pred cCHHHHHHHHHHCCCeEEEEcCccccceEEEecCCcEEEEecCCcccCCCCc-----eEEEEEEC
Confidence 466888999999999999999996522 2233344322222344453 2232 34466666
No 120
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=95.80 E-value=0.027 Score=52.28 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=21.9
Q ss_pred CChHHHHHHHHcCCeeEEEeccCCC
Q 015684 277 VNSGFFTTMVAAGDVKAVFTGHDHV 301 (402)
Q Consensus 277 ~~~~~l~~l~~~~~v~~v~~GH~H~ 301 (402)
-+...+++++++.++++++-||.=.
T Consensus 220 fg~~~~~~Fl~~n~l~~iiR~He~~ 244 (293)
T cd07414 220 FGKDVVAKFLNKHDLDLICRAHQVV 244 (293)
T ss_pred cCHHHHHHHHHHcCCeEEEECCccc
Confidence 4668889999999999999999965
No 121
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=95.63 E-value=0.032 Score=52.30 Aligned_cols=25 Identities=8% Similarity=0.234 Sum_probs=22.0
Q ss_pred CChHHHHHHHHcCCeeEEEeccCCC
Q 015684 277 VNSGFFTTMVAAGDVKAVFTGHDHV 301 (402)
Q Consensus 277 ~~~~~l~~l~~~~~v~~v~~GH~H~ 301 (402)
-+...++.++++.++++++=||.-.
T Consensus 229 FG~~~~~~Fl~~n~l~~IiR~Hq~v 253 (320)
T PTZ00480 229 FSQEIVQVFLKKHELDLICRAHQVV 253 (320)
T ss_pred cCHHHHHHHHHhCCCcEEEEcCccc
Confidence 4668889999999999999999866
No 122
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=95.46 E-value=0.1 Score=47.78 Aligned_cols=81 Identities=15% Similarity=0.117 Sum_probs=50.2
Q ss_pred cCCCceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhc--------CCCEEEEcCCccCCC-----C
Q 015684 39 RQNGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAE--------KPDLIVFTGDNIFGF-----D 105 (402)
Q Consensus 39 ~~~~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--------~pD~vv~~GDli~~~-----~ 105 (402)
+++...+|+++||+|++. .++++.+.+++... .|-.+|+.|+..... .
T Consensus 23 ~~~~~~~~VilSDV~LD~-------------------p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~ 83 (291)
T PTZ00235 23 KNDKRHNWIIMHDVYLDS-------------------PYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRN 83 (291)
T ss_pred cCCCceEEEEEEeeccCC-------------------HHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCC
Confidence 345679999999999975 34566666666543 288999999944332 1
Q ss_pred hhhHHHHHHHHHhH-----h--HhCCCCEEEEcCCCCCCC
Q 015684 106 ATDAAKSLNAAFAP-----A--IASNIPWVAVLGNHDQES 138 (402)
Q Consensus 106 ~~~~~~~~~~~l~~-----~--~~~~iP~~~v~GNHD~~~ 138 (402)
....|+.-.+.+.. + +....-+++|||-.|-+.
T Consensus 84 ~~~~yk~~Fd~La~llls~fp~L~~~s~fVFVPGpnDPw~ 123 (291)
T PTZ00235 84 FHKVYIKGFEKLSVMLISKFKLILEHCYLIFIPGINDPCA 123 (291)
T ss_pred chHHHHHHHHHHHHHHHHhChHHHhcCeEEEECCCCCCCc
Confidence 11223222222222 1 123567999999999753
No 123
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=95.37 E-value=0.059 Score=50.25 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=21.8
Q ss_pred CChHHHHHHHHcCCeeEEEeccCCC
Q 015684 277 VNSGFFTTMVAAGDVKAVFTGHDHV 301 (402)
Q Consensus 277 ~~~~~l~~l~~~~~v~~v~~GH~H~ 301 (402)
-+...++.++++.++++++=||.=.
T Consensus 213 fg~~~~~~Fl~~n~l~~iiR~He~~ 237 (303)
T PTZ00239 213 FGAKVTKEFCRLNDLTLICRAHQLV 237 (303)
T ss_pred cCHHHHHHHHHHCCCcEEEEcChhh
Confidence 4668889999999999999999866
No 124
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=95.36 E-value=0.04 Score=51.16 Aligned_cols=25 Identities=8% Similarity=0.230 Sum_probs=21.8
Q ss_pred CChHHHHHHHHcCCeeEEEeccCCC
Q 015684 277 VNSGFFTTMVAAGDVKAVFTGHDHV 301 (402)
Q Consensus 277 ~~~~~l~~l~~~~~v~~v~~GH~H~ 301 (402)
-+....+.++++.++++++=||.-.
T Consensus 222 fg~~~~~~Fl~~n~l~~iiR~Hq~~ 246 (294)
T PTZ00244 222 FGEDIVNDFLDMVDMDLIVRAHQVM 246 (294)
T ss_pred cCHHHHHHHHHHcCCcEEEEcCccc
Confidence 4667889999999999999999965
No 125
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=95.30 E-value=1.2 Score=39.66 Aligned_cols=106 Identities=22% Similarity=0.330 Sum_probs=58.5
Q ss_pred eEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhC
Q 015684 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIAS 123 (402)
Q Consensus 44 ~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~ 123 (402)
|||+++.|+=-..+.. -....+..+-.+.++||||..|-..++.. --.++.+.+. .+.
T Consensus 1 mriLfiGDvvGk~Gr~-----------------~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~-Git~k~y~~l----~~~ 58 (266)
T COG1692 1 MRILFIGDVVGKPGRK-----------------AVKEHLPQLKSKYKIDFVIVNGENAAGGF-GITEKIYKEL----LEA 58 (266)
T ss_pred CeEEEEecccCcchHH-----------------HHHHHhHHHHHhhcCcEEEEcCccccCCc-CCCHHHHHHH----HHh
Confidence 6899999986544321 12233444445679999999999655542 2222333333 346
Q ss_pred CCCEEEEcCCCCCCCCCCHHHHHHHHHhcCCcccccC-CCCCccccccccceEEecc
Q 015684 124 NIPWVAVLGNHDQESTLSREGVMKHIVTLKNTLSQVN-PSDAHIIDGFGNYNLEIGG 179 (402)
Q Consensus 124 ~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~g~~~y~~~~~~ 179 (402)
++-+ ++.|||=.. ..++.+++....+-+...+ |.. ..|.|+..+...+
T Consensus 59 G~dv-iT~GNH~wd----~~ei~~~i~~~~~ilRP~N~p~~---~~G~G~~~f~~ng 107 (266)
T COG1692 59 GADV-ITLGNHTWD----QKEILDFIDNADRILRPANYPDG---TPGKGSRIFKING 107 (266)
T ss_pred CCCE-Eeccccccc----chHHHHHhhcccceeccCCCCCC---CCcceEEEEEeCC
Confidence 7764 578999753 3445555544433222222 222 4455655555544
No 126
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=95.06 E-value=0.091 Score=49.34 Aligned_cols=58 Identities=7% Similarity=0.178 Sum_probs=35.4
Q ss_pred CChHHHHHHHHcCCeeEEEeccCCCCc-ccccCCCeeEEecCCccCC-CCCCCCCCcceEEEEEe
Q 015684 277 VNSGFFTTMVAAGDVKAVFTGHDHVND-FCGRLTGIQLCYGGGFGYH-AYGKAGWERRARVVVAS 339 (402)
Q Consensus 277 ~~~~~l~~l~~~~~v~~v~~GH~H~~~-~~~~~~gi~~~~~~~~g~~-~y~~~~~~~g~rv~ei~ 339 (402)
-+.+.+..++++.++++++-||.=..+ +....+|.-+..-.++.|. .+++ ..-++.|+
T Consensus 231 fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~Y~~~~~N-----~ga~~~i~ 290 (316)
T cd07417 231 FGPDVTKRFLEENNLEYIIRSHEVKDEGYEVEHDGKCITVFSAPNYCDQMGN-----KGAFIRIT 290 (316)
T ss_pred eCHHHHHHHHHHcCCcEEEECCcccceeEEEecCCeEEEEeCCccccCCCCc-----ceEEEEEe
Confidence 356788999999999999999996532 3233445333223345553 2333 24466676
No 127
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=94.69 E-value=0.13 Score=48.35 Aligned_cols=58 Identities=12% Similarity=0.233 Sum_probs=35.3
Q ss_pred CChHHHHHHHHcCCeeEEEeccC-CCCcccccCCCeeEEecCCccCC-CCCCCCCCcceEEEEEe
Q 015684 277 VNSGFFTTMVAAGDVKAVFTGHD-HVNDFCGRLTGIQLCYGGGFGYH-AYGKAGWERRARVVVAS 339 (402)
Q Consensus 277 ~~~~~l~~l~~~~~v~~v~~GH~-H~~~~~~~~~gi~~~~~~~~g~~-~y~~~~~~~g~rv~ei~ 339 (402)
-+...++.++++.++++++=||. +...+....+|--+..-.++.|. .+++ ..-++.++
T Consensus 240 fg~~~~~~Fl~~n~l~~iiRgHe~~~~G~~~~~~~~~iTvfSa~~y~~~~~n-----~~ai~~i~ 299 (311)
T cd07419 240 FGPDRVHRFLEENDLQMIIRAHECVMDGFERFAQGKLITLFSATNYCGTAGN-----AGAILVLG 299 (311)
T ss_pred ECHHHHHHHHHHCCCeEEEEechhhhCCeEEeCCCeEEEEecCCcccCCCCc-----eEEEEEEC
Confidence 45678899999999999999998 33334433445322222344453 2333 34566665
No 128
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=94.62 E-value=1.7 Score=39.47 Aligned_cols=74 Identities=12% Similarity=0.143 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCccccCCCCCeEEEEecChhhhhcccCCCcccccCCcCCCCCC-ChHHHHHHHHcCCeeEE
Q 015684 216 SQQFWFEQTSARLQRAYMSKPAAQKAPAPGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASV-NSGFFTTMVAAGDVKAV 294 (402)
Q Consensus 216 ~q~~Wl~~~l~~l~~~~~~~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~G~~~~~~~~~~~-~~~~l~~l~~~~~v~~v 294 (402)
.+++.+.+.++++++ ....+|++.|.-..-. ..|.. ..++...+++.+ +++|
T Consensus 168 ~~~~~i~~~i~~~r~----------~~D~vIv~~HwG~e~~----------------~~p~~~q~~~a~~lidaG-aDiI 220 (250)
T PF09587_consen 168 PGIERIKEDIREARK----------KADVVIVSLHWGIEYE----------------NYPTPEQRELARALIDAG-ADII 220 (250)
T ss_pred chHHHHHHHHHHHhc----------CCCEEEEEeccCCCCC----------------CCCCHHHHHHHHHHHHcC-CCEE
Confidence 345778888777763 5678999999843110 00111 124556677765 9999
Q ss_pred EeccCCCCcccccCCCeeEEec
Q 015684 295 FTGHDHVNDFCGRLTGIQLCYG 316 (402)
Q Consensus 295 ~~GH~H~~~~~~~~~gi~~~~~ 316 (402)
+.+|-|.-.-.-.+++..+.|+
T Consensus 221 iG~HpHv~q~~E~y~~~~I~YS 242 (250)
T PF09587_consen 221 IGHHPHVIQPVEIYKGKPIFYS 242 (250)
T ss_pred EeCCCCcccceEEECCEEEEEe
Confidence 9999999655556677777765
No 129
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.59 E-value=0.17 Score=41.04 Aligned_cols=71 Identities=20% Similarity=0.226 Sum_probs=47.3
Q ss_pred HHHHHHHHcCCeeEEEeccCCCCcccc-cCCCeeEEecCCccCCCCCCCC---CCcceEEEEEeeccccccCCCcccceE
Q 015684 280 GFFTTMVAAGDVKAVFTGHDHVNDFCG-RLTGIQLCYGGGFGYHAYGKAG---WERRARVVVASLEKTEKRGWGDVKSIK 355 (402)
Q Consensus 280 ~~l~~l~~~~~v~~v~~GH~H~~~~~~-~~~gi~~~~~~~~g~~~y~~~~---~~~g~rv~ei~~~~~~~~~~~~~~~~~ 355 (402)
+.++.|.+.-+|+..+.||+|. +.. ..+| .++.+|+|+-|+|+... ..|.+-+.+|+- ....
T Consensus 97 ~sL~~LaRqldvDILl~G~Th~--f~Aye~eg-~ffvnPGSaTGAfn~~~t~~~~PSFvLmDiqg-----------~~~v 162 (183)
T KOG3325|consen 97 ESLALLARQLDVDILLTGHTHK--FEAYEHEG-KFFVNPGSATGAFNVSDTDIIVPSFVLMDIQG-----------STVV 162 (183)
T ss_pred HHHHHHHHhcCCcEEEeCCcee--EEEEEeCC-cEEeCCCcccCCCcccccCCCCCceEEEEecC-----------CEEE
Confidence 5567788888999999999998 433 3445 45556667667776432 457777777762 4566
Q ss_pred EE-EEcCCCC
Q 015684 356 TW-KRLDDEH 364 (402)
Q Consensus 356 tw-~r~~~~~ 364 (402)
+| -|+-+++
T Consensus 163 ~YvY~lidge 172 (183)
T KOG3325|consen 163 TYVYRLIDGE 172 (183)
T ss_pred EEEeeeeCCc
Confidence 66 4555554
No 130
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=94.55 E-value=0.087 Score=43.70 Aligned_cols=44 Identities=30% Similarity=0.334 Sum_probs=31.7
Q ss_pred cCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCCCC
Q 015684 89 EKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHD 135 (402)
Q Consensus 89 ~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GNHD 135 (402)
.+.|++|+.|| +....... ..+.+.+..-....+|.|++-|||+
T Consensus 25 gpFd~~ic~Gd-ff~~~~~~--~~~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 25 GPFDALLCVGD-FFGDDEDD--EELEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred CCeeEEEEecC-ccCCccch--hhHHHHhcCCccCCCCEEEECCCCC
Confidence 47799999999 54443222 3455556655567899999999996
No 131
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=84.92 E-value=1.8 Score=37.38 Aligned_cols=42 Identities=21% Similarity=0.267 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCC
Q 015684 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIP 126 (402)
Q Consensus 80 ~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP 126 (402)
+...++.+..+++.++++||+- ..+|.+-..+.+.+.+.|+|
T Consensus 83 ~aA~~ly~~gKV~~LLlSGDN~-----~~sYnEp~tM~kdL~~~GVp 124 (235)
T COG2949 83 DAAIALYKAGKVNYLLLSGDNA-----TVSYNEPRTMRKDLIAAGVP 124 (235)
T ss_pred HHHHHHHhcCCeeEEEEecCCC-----cccccchHHHHHHHHHcCCC
Confidence 3344455567999999999943 23344444555556678998
No 132
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=80.78 E-value=3.2 Score=39.64 Aligned_cols=60 Identities=27% Similarity=0.330 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEc-CC--CCCCCCCCHHHHHH
Q 015684 78 TTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVL-GN--HDQESTLSREGVMK 147 (402)
Q Consensus 78 ~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~-GN--HD~~~~~~~~~~~~ 147 (402)
.+..+.+++.+.+||+|++.|| - ++.+...+... ..+||+..+- |. +|...+...+....
T Consensus 55 ~~~~~~~~~~~~~Pd~Vlv~GD-~--------~~~la~alaA~-~~~ipv~HieaGlRs~d~~~g~~de~~R~ 117 (346)
T PF02350_consen 55 AIIELADVLEREKPDAVLVLGD-R--------NEALAAALAAF-YLNIPVAHIEAGLRSGDRTEGMPDEINRH 117 (346)
T ss_dssp HHHHHHHHHHHHT-SEEEEETT-S--------HHHHHHHHHHH-HTT-EEEEES-----S-TTSSTTHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEcC-C--------chHHHHHHHHH-HhCCCEEEecCCCCccccCCCCchhhhhh
Confidence 4566677777899999999999 2 23443344332 3699999886 52 34433344443333
No 133
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=80.21 E-value=12 Score=36.16 Aligned_cols=79 Identities=15% Similarity=0.271 Sum_probs=50.1
Q ss_pred CCceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHh---cCCCEEEEcCCccCCCC-hhhHHHHHHHH
Q 015684 41 NGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISA---EKPDLIVFTGDNIFGFD-ATDAAKSLNAA 116 (402)
Q Consensus 41 ~~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~---~~pD~vv~~GDli~~~~-~~~~~~~~~~~ 116 (402)
+..-+|+.+||+|++. ..+++.+.+.+.. ..|-++|+.|- .+... ...+-..+++-
T Consensus 280 ~~d~~fVfLSdV~LD~-------------------~~vm~aL~kifqgy~~~pP~~iIlcG~-FtS~p~~~~s~~~~k~~ 339 (525)
T KOG3818|consen 280 NTDTSFVFLSDVFLDD-------------------KKVMEALRKIFQGYKDAPPTAIILCGS-FTSSPRQTSSSDQLKDG 339 (525)
T ss_pred CcCceEEEEehhcccc-------------------HHHHHHHHHHHhhccCCCCeEEEEecc-ccccccccchHHHHHHH
Confidence 3457888889999974 4566667666664 46789999999 44442 22223333333
Q ss_pred HhHhHh---------CCCCEEEEcCCCCCCCC
Q 015684 117 FAPAIA---------SNIPWVAVLGNHDQEST 139 (402)
Q Consensus 117 l~~~~~---------~~iP~~~v~GNHD~~~~ 139 (402)
+..+.+ .+..+++|||=.|-+..
T Consensus 340 f~~LA~~l~~~~~~~ekT~fIFVPGP~Dp~~~ 371 (525)
T KOG3818|consen 340 FRWLAAQLTCFRKDYEKTQFIFVPGPNDPWVD 371 (525)
T ss_pred HHHHHhhccccccccccceEEEecCCCCCCcC
Confidence 332221 24569999999998653
No 134
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=79.56 E-value=6.4 Score=34.80 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCC
Q 015684 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGN 133 (402)
Q Consensus 80 ~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GN 133 (402)
+.|.+..++-+-=.=+++|| +..|..+.+.++.+.+.+||+-+|||=
T Consensus 66 ~~m~~a~~~Gk~VvRLhSGD-------psiYgA~~EQm~~L~~~gI~yevvPGV 112 (254)
T COG2875 66 DLMVDAVREGKDVVRLHSGD-------PSIYGALAEQMRELEALGIPYEVVPGV 112 (254)
T ss_pred HHHHHHHHcCCeEEEeecCC-------hhHHHHHHHHHHHHHHcCCCeEEeCCc
Confidence 33444443334445589999 457788888888888899999999993
No 135
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=77.73 E-value=4 Score=35.34 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=11.5
Q ss_pred CeeEEEeccCCCC
Q 015684 290 DVKAVFTGHDHVN 302 (402)
Q Consensus 290 ~v~~v~~GH~H~~ 302 (402)
+++++||||+|..
T Consensus 144 ~~dl~lSGHtHgG 156 (193)
T cd08164 144 KPGLILTGHDHEG 156 (193)
T ss_pred CCCEEEeCccCCC
Confidence 5899999999983
No 136
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=76.37 E-value=5.9 Score=37.92 Aligned_cols=50 Identities=30% Similarity=0.409 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEE-cCCCCC
Q 015684 77 NTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAV-LGNHDQ 136 (402)
Q Consensus 77 ~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v-~GNHD~ 136 (402)
+.+..+.+++.+++||+|++-|| .+ ..+...+..+ ..+||+..+ .|+-=.
T Consensus 79 ~~i~~~~~vl~~~kPD~VlVhGD-T~--------t~lA~alaa~-~~~IpV~HvEAGlRt~ 129 (383)
T COG0381 79 NIIEGLSKVLEEEKPDLVLVHGD-TN--------TTLAGALAAF-YLKIPVGHVEAGLRTG 129 (383)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCC-cc--------hHHHHHHHHH-HhCCceEEEecccccC
Confidence 45677778888999999999999 32 1222233322 258999977 576544
No 137
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=75.46 E-value=3.2 Score=42.07 Aligned_cols=53 Identities=17% Similarity=0.163 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCCCCCC
Q 015684 78 TTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQE 137 (402)
Q Consensus 78 ~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GNHD~~ 137 (402)
....+..+|+..-+|-+-+.|| |++.|.... .+++.+.. ---+=+-+||||.-
T Consensus 172 fI~al~~lIqrL~VDhLHIvGD-IyDRGp~pd-----~ImD~Lm~-~hsvDIQWGNHDIl 224 (640)
T PF06874_consen 172 FIIALSELIQRLAVDHLHIVGD-IYDRGPRPD-----KIMDRLMN-YHSVDIQWGNHDIL 224 (640)
T ss_pred HHHHHHHHHHHHhhhheeeccc-ccCCCCChh-----HHHHHHhc-CCCccccccchHHH
Confidence 4455666777789999999999 888764321 33333322 12356678999973
No 138
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=72.22 E-value=6.3 Score=32.67 Aligned_cols=52 Identities=10% Similarity=0.041 Sum_probs=33.9
Q ss_pred CeEEEEecChhhhhcccCCCcccccCCcCCCCCCChHHHHHHHHcCCeeEEEeccCCC
Q 015684 244 PGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGFFTTMVAAGDVKAVFTGHDHV 301 (402)
Q Consensus 244 ~~iv~~H~P~~~~~~~~~~~~~G~~~~~~~~~~~~~~~l~~l~~~~~v~~v~~GH~H~ 301 (402)
.-|+++|.|+......... .. + ......++..++.+++.-+.+++||||.|.
T Consensus 70 ~DILlTh~wP~gi~~~~~~---~~--~-~~~~~~GS~~i~~l~~~lkPrYhf~gh~~~ 121 (150)
T cd07380 70 VDILLTSEWPKGISKLSKV---PF--E-ETLLICGSDLIAELAKKLKPRYHFAGLEGV 121 (150)
T ss_pred CCEEECCCCchhhhhhCCC---cc--c-ccccCCCCHHHHHHHHHcCCCeEeecCCCc
Confidence 4799999988653221100 00 0 011224667888898888899999999997
No 139
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=71.68 E-value=1.5 Score=33.13 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=8.4
Q ss_pred eehHHHHHHHHHHhccc
Q 015684 10 ALVIVAVLTLLCIAPTL 26 (402)
Q Consensus 10 ~~~~~l~~~~~~~~~~~ 26 (402)
+++|+|+|++++|+.+.
T Consensus 6 ~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSE 22 (95)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 44455555555554443
No 140
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=68.26 E-value=5.3 Score=35.40 Aligned_cols=31 Identities=10% Similarity=0.048 Sum_probs=19.6
Q ss_pred CeeEEEeccCCCCcccccCCCeeEEecCCccCC
Q 015684 290 DVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYH 322 (402)
Q Consensus 290 ~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~ 322 (402)
+.+.+++||+|.. .....++. ++..+++.|+
T Consensus 179 ~~~~vv~GHTh~~-~~~~~~~~-i~IDtGs~~g 209 (218)
T PRK09968 179 GADYFIFGHMMFD-NIQTFANQ-IYIDTGSPKS 209 (218)
T ss_pred CCCEEEECCCCcC-cceeECCE-EEEECCCCCC
Confidence 5689999999984 44445554 4444444554
No 141
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=67.11 E-value=15 Score=35.35 Aligned_cols=49 Identities=35% Similarity=0.382 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEE-cCCCCC
Q 015684 78 TTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAV-LGNHDQ 136 (402)
Q Consensus 78 ~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v-~GNHD~ 136 (402)
.+..+.+++.+.+||+|++.|| . +..+...+... ..+||++.+ -|++-.
T Consensus 81 ~~~~~~~~~~~~~Pd~vlv~GD-~--------~~~la~alaA~-~~~IPv~HveaG~rs~ 130 (365)
T TIGR03568 81 TIIGFSDAFERLKPDLVVVLGD-R--------FEMLAAAIAAA-LLNIPIAHIHGGEVTE 130 (365)
T ss_pred HHHHHHHHHHHhCCCEEEEeCC-c--------hHHHHHHHHHH-HhCCcEEEEECCccCC
Confidence 3566677788899999999999 2 22333333322 369999955 576743
No 142
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=64.91 E-value=3.2 Score=22.80 Aligned_cols=15 Identities=20% Similarity=0.146 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhcccc
Q 015684 13 IVAVLTLLCIAPTLA 27 (402)
Q Consensus 13 ~~l~~~~~~~~~~~~ 27 (402)
+++.++++..+.+|+
T Consensus 10 il~~l~a~~~LagCs 24 (25)
T PF08139_consen 10 ILFPLLALFMLAGCS 24 (25)
T ss_pred HHHHHHHHHHHhhcc
Confidence 444455555455553
No 143
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=64.36 E-value=9.7 Score=36.02 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=22.1
Q ss_pred CChHHHHHHHHcCCeeEEEeccCCCCc
Q 015684 277 VNSGFFTTMVAAGDVKAVFTGHDHVND 303 (402)
Q Consensus 277 ~~~~~l~~l~~~~~v~~v~~GH~H~~~ 303 (402)
-+...++++.++.++++++-+|.=..+
T Consensus 231 fg~~~v~~f~~~~~ldlivRaHqvv~d 257 (331)
T KOG0374|consen 231 FGPAVVEDFCKKLDLDLIVRAHQVVED 257 (331)
T ss_pred ecHHHHHHHHHHhCcceEEEcCccccc
Confidence 456778899999999999999976643
No 144
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=63.20 E-value=8.9 Score=37.34 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCCCCCC
Q 015684 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQE 137 (402)
Q Consensus 80 ~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GNHD~~ 137 (402)
-.+...+++.-+|.+-+.|| |++.|... . .++..+.+.. .+=+-+||||.-
T Consensus 180 ~ala~~iqrLvVDhLHiVGD-IyDRGP~p--d---~Imd~L~~yh-svDiQWGNHDil 230 (648)
T COG3855 180 IALAYLIQRLVVDHLHIVGD-IYDRGPYP--D---KIMDTLINYH-SVDIQWGNHDIL 230 (648)
T ss_pred HHHHHHHHHHhhhheeeecc-cccCCCCc--h---HHHHHHhhcc-cccccccCcceE
Confidence 34445566778999999999 88776422 1 2333333211 244567999974
No 145
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=59.73 E-value=51 Score=27.42 Aligned_cols=52 Identities=13% Similarity=0.270 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCCEEEEcC---CccCCCChhhHHHHHHHHHhHhHh--CCCCEEEE
Q 015684 79 TAFINRMISAEKPDLIVFTG---DNIFGFDATDAAKSLNAAFAPAIA--SNIPWVAV 130 (402)
Q Consensus 79 ~~~l~~~i~~~~pD~vv~~G---Dli~~~~~~~~~~~~~~~l~~~~~--~~iP~~~v 130 (402)
...+.+.+...+||.|++.. |+..+.......+.+.++++.+.+ .+.+++++
T Consensus 39 ~~~~~~~~~~~~p~~vvi~~G~ND~~~~~~~~~~~~~~~~lv~~i~~~~~~~~iil~ 95 (171)
T cd04502 39 LHYFDRLVLPYQPRRVVLYAGDNDLASGRTPEEVLRDFRELVNRIRAKLPDTPIAII 95 (171)
T ss_pred HHHHHhhhccCCCCEEEEEEecCcccCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 33444555556999988854 743333333344455566665544 24566654
No 146
>PRK09967 putative outer membrane lipoprotein; Provisional
Probab=59.25 E-value=41 Score=28.13 Aligned_cols=56 Identities=9% Similarity=0.148 Sum_probs=32.9
Q ss_pred CCceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChh
Q 015684 41 NGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDAT 107 (402)
Q Consensus 41 ~~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~ 107 (402)
++.+.|-.-+|++|..+...-. + .....++.+...+...+...|.+.|. .+..+..
T Consensus 43 ~~~~~i~l~~~v~F~~~sa~L~----~------~~~~~L~~ia~~l~~~~~~~v~I~Gh-TD~~G~~ 98 (160)
T PRK09967 43 AGDWSLGLSDAILFAKNDYKLL----P------ESQQQIQTMAAKLASTGLTHARMDGH-TDNYGED 98 (160)
T ss_pred CCceEEEcCCceeeCCCccccC----H------HHHHHHHHHHHHHHhCCCceEEEEEE-cCCCCCH
Confidence 4567777778899886653210 0 12233455555555554567889998 6655543
No 147
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=58.86 E-value=12 Score=32.78 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=18.9
Q ss_pred HHHHHHHcCCeeEEEeccCCCCcc
Q 015684 281 FFTTMVAAGDVKAVFTGHDHVNDF 304 (402)
Q Consensus 281 ~l~~l~~~~~v~~v~~GH~H~~~~ 304 (402)
.++.+++..+.+++++||+|....
T Consensus 158 ~~~~~l~~~~~~~iv~GHTh~~~~ 181 (208)
T cd07425 158 HLDKVLERLGAKRMVVGHTPQEGG 181 (208)
T ss_pred HHHHHHHHcCCCeEEEcCeeeecC
Confidence 456677777889999999998543
No 148
>PRK11627 hypothetical protein; Provisional
Probab=58.38 E-value=7.9 Score=33.52 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=19.4
Q ss_pred CcccccccceehHHHHHHHHHHhcccccccCCCcceeecCC
Q 015684 1 MMVHRKKKPALVIVAVLTLLCIAPTLAVNAKQERKLRFRQN 41 (402)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 41 (402)
|||+ +++.|++++++.+|++.| .++.|.+.
T Consensus 1 mlkk--------lll~l~a~~~L~gCA~~p---~~l~l~P~ 30 (192)
T PRK11627 1 MLKK--------ILFPLVALFMLAGCATPS---NTLEVSPK 30 (192)
T ss_pred ChHH--------HHHHHHHHHHHHhhcCCC---CEEEeCCc
Confidence 7888 666666666677776543 46666543
No 149
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=55.17 E-value=29 Score=30.55 Aligned_cols=45 Identities=18% Similarity=0.179 Sum_probs=32.8
Q ss_pred cCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCCC
Q 015684 89 EKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNH 134 (402)
Q Consensus 89 ~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GNH 134 (402)
...|+++++|| .-...+..+|+...++++-....+.+.+++.|--
T Consensus 82 ~~~Dliil~Gd-~Q~~~~~gqyel~~~~Ld~a~e~g~~~IyTLGGy 126 (258)
T COG2047 82 GERDLIILVGD-TQATSSEGQYELTGKILDIAKEFGARMIYTLGGY 126 (258)
T ss_pred CCCcEEEEecc-ccccCcchhHHHHHHHHHHHHHcCCcEEEEecCc
Confidence 56799999999 5544455566666667766666788888888753
No 150
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=54.54 E-value=13 Score=32.44 Aligned_cols=28 Identities=32% Similarity=0.313 Sum_probs=17.8
Q ss_pred CeeEEEeccCCCCcccccCCCeeEEecCC
Q 015684 290 DVKAVFTGHDHVNDFCGRLTGIQLCYGGG 318 (402)
Q Consensus 290 ~v~~v~~GH~H~~~~~~~~~gi~~~~~~~ 318 (402)
+.+.+++||+|.. .....++...+-+|+
T Consensus 168 ~~~~iV~GHTh~~-~~~~~~~~i~ID~Gs 195 (207)
T cd07424 168 GVDAVVHGHTPVK-RPLRLGNVLYIDTGA 195 (207)
T ss_pred CCCEEEECCCCCC-cceEECCEEEEECCC
Confidence 3578999999994 444455554444443
No 151
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.71 E-value=38 Score=33.16 Aligned_cols=69 Identities=20% Similarity=0.171 Sum_probs=40.9
Q ss_pred eEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcC-CCEEEEcCCccCCCChhhHHHHHHHHHhHhHh
Q 015684 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEK-PDLIVFTGDNIFGFDATDAAKSLNAAFAPAIA 122 (402)
Q Consensus 44 ~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~ 122 (402)
.||+++.|.--. .....+.+.++-++.. .|++++.|+ .++... .-..+.+.......
T Consensus 6 ~kILv~Gd~~Gr-------------------~~eli~rI~~v~Kk~GpFd~liCvGn-fF~~~~--~~~e~~~ykng~~~ 63 (528)
T KOG2476|consen 6 AKILVCGDVEGR-------------------FDELIKRIQKVNKKSGPFDLLICVGN-FFGHDT--QNAEVEKYKNGTKK 63 (528)
T ss_pred ceEEEEcCcccc-------------------HHHHHHHHHHHhhcCCCceEEEEecc-cCCCcc--chhHHHHHhcCCcc
Confidence 578888876521 1233445555444444 699999999 666422 12233344444445
Q ss_pred CCCCEEEEcCCC
Q 015684 123 SNIPWVAVLGNH 134 (402)
Q Consensus 123 ~~iP~~~v~GNH 134 (402)
..||+|+.-+|-
T Consensus 64 vPiptY~~g~~~ 75 (528)
T KOG2476|consen 64 VPIPTYFLGDNA 75 (528)
T ss_pred CceeEEEecCCC
Confidence 688899887775
No 152
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=51.05 E-value=58 Score=28.12 Aligned_cols=11 Identities=18% Similarity=0.398 Sum_probs=9.5
Q ss_pred CCCEEEEcCCc
Q 015684 90 KPDLIVFTGDN 100 (402)
Q Consensus 90 ~pD~vv~~GDl 100 (402)
-+++++.+||.
T Consensus 74 i~~f~iQgG~~ 84 (190)
T PRK10903 74 IPGFMIQGGGF 84 (190)
T ss_pred eCCceEEeCCc
Confidence 57999999993
No 153
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=48.76 E-value=35 Score=33.69 Aligned_cols=49 Identities=22% Similarity=0.299 Sum_probs=31.8
Q ss_pred HHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCCCCCC
Q 015684 85 MISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQE 137 (402)
Q Consensus 85 ~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GNHD~~ 137 (402)
.|...+||.|+++|= +++.+ .+.-....+.+... ..++|+ ++.||-|..
T Consensus 115 ~I~~~~PDIILLaGG-tDGG~-~e~~l~NA~~La~~-~~~~pI-IyAGN~~a~ 163 (463)
T TIGR01319 115 AIEESNLDIILFAGG-TDGGE-EECGIHNAKMLAEH-GLDCAI-IVAGNKDIQ 163 (463)
T ss_pred HHhhcCCCEEEEeCC-cCCCc-hHHHHHHHHHHHhc-CCCCcE-EEeCCHHHH
Confidence 344579999999999 66553 33334444555543 367884 456999873
No 154
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=48.18 E-value=29 Score=31.34 Aligned_cols=44 Identities=14% Similarity=0.211 Sum_probs=26.6
Q ss_pred CEEEEcCCccCCCCh----hhHHHHHHHHHhHhHhCCCCEEEEcCCCCC
Q 015684 92 DLIVFTGDNIFGFDA----TDAAKSLNAAFAPAIASNIPWVAVLGNHDQ 136 (402)
Q Consensus 92 D~vv~~GDli~~~~~----~~~~~~~~~~l~~~~~~~iP~~~v~GNHD~ 136 (402)
+-++++||.+...+. ....+.+.+.++.+........++|| |++
T Consensus 119 ~~~lftGDtl~~~g~g~~~~~~~~~~~~Sl~~l~~l~~~~~i~pG-H~~ 166 (248)
T TIGR03413 119 SPALFCGDTLFSAGCGRLFEGTPEQMYDSLQRLAALPDDTLVYCA-HEY 166 (248)
T ss_pred CCEEEEcCccccCCcCCCCCCCHHHHHHHHHHHHcCCCCeEEECC-CCc
Confidence 348999997766532 12233444555555445545678899 885
No 155
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=47.80 E-value=44 Score=27.65 Aligned_cols=58 Identities=14% Similarity=0.211 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHh--CCCCEEEEcCCCCC
Q 015684 76 LNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIA--SNIPWVAVLGNHDQ 136 (402)
Q Consensus 76 ~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~--~~iP~~~v~GNHD~ 136 (402)
.+..+.+.+.+.+.+||.|+++|. +......++.+.+.++.... ..-|+-++..|-+.
T Consensus 49 ~~~~~~l~~~i~~~kP~vI~v~g~---~~~s~~l~~~v~~~v~~~~~~~~~~~i~V~~v~~~~ 108 (150)
T PF14639_consen 49 EEDMERLKKFIEKHKPDVIAVGGN---SRESRKLYDDVRDIVEELDEDEQMPPIPVVIVDDEV 108 (150)
T ss_dssp HHHHHHHHHHHHHH--SEEEE--S---STHHHHHHHHHHHHHHHTTB-TTS-B--EEE---TT
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCC---ChhHHHHHHHHHHHHHHhhhcccCCCceEEEECcHH
Confidence 344567788888999999999887 22233444555555554321 11245556677665
No 156
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=47.10 E-value=10 Score=31.33 Aligned_cols=16 Identities=19% Similarity=0.509 Sum_probs=12.1
Q ss_pred CcccccccceehHHHH
Q 015684 1 MMVHRKKKPALVIVAV 16 (402)
Q Consensus 1 ~~~~~~~~~~~~~~l~ 16 (402)
||++++||+.++++++
T Consensus 1 m~~~~~~rl~~~~~~~ 16 (148)
T PRK13254 1 MMKRKRRRLLIILGAL 16 (148)
T ss_pred CCccchhHHHHHHHHH
Confidence 8888888886666555
No 157
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=46.36 E-value=85 Score=25.91 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCEEEEc-C--CccCCCChhhHHHHHHHHHhHhHh--CCCCEEEE
Q 015684 80 AFINRMISAEKPDLIVFT-G--DNIFGFDATDAAKSLNAAFAPAIA--SNIPWVAV 130 (402)
Q Consensus 80 ~~l~~~i~~~~pD~vv~~-G--Dli~~~~~~~~~~~~~~~l~~~~~--~~iP~~~v 130 (402)
+.+.+.+ ..+||+|++. | |+..+.......+.+.+.+..+.+ .+++++++
T Consensus 39 ~~l~~~~-~~~pd~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~ 93 (169)
T cd01828 39 ARLDEDV-ALQPKAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQ 93 (169)
T ss_pred HHHHHHh-ccCCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 3444444 5689987774 4 633322233344556666665555 56676664
No 158
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=45.22 E-value=34 Score=30.87 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=28.7
Q ss_pred cCCCceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCcc
Q 015684 39 RQNGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNI 101 (402)
Q Consensus 39 ~~~~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli 101 (402)
-.++..+|++.||++--... . ..+.+.+.+||++++.|=..
T Consensus 172 V~dg~~~i~faSDvqGp~~~------------------~----~l~~i~e~~P~v~ii~GPpt 212 (304)
T COG2248 172 VTDGKSSIVFASDVQGPIND------------------E----ALEFILEKRPDVLIIGGPPT 212 (304)
T ss_pred EecCCeEEEEcccccCCCcc------------------H----HHHHHHhcCCCEEEecCCch
Confidence 45788999999999832211 1 23444567999999999944
No 159
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=42.75 E-value=80 Score=28.15 Aligned_cols=51 Identities=12% Similarity=0.173 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhH-hCCCCEEEEcCCCCC
Q 015684 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAI-ASNIPWVAVLGNHDQ 136 (402)
Q Consensus 80 ~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~-~~~iP~~~v~GNHD~ 136 (402)
..+.+.+..-.-|+|++.|= .. - ..+.+.+.++.+. ..++|++.-||||..
T Consensus 31 ~ei~~~~~~~GTDaImIGGS-~g-v----t~~~~~~~v~~ik~~~~lPvilfP~~~~~ 82 (240)
T COG1646 31 DEIAEAAAEAGTDAIMIGGS-DG-V----TEENVDNVVEAIKERTDLPVILFPGSPSG 82 (240)
T ss_pred HHHHHHHHHcCCCEEEECCc-cc-c----cHHHHHHHHHHHHhhcCCCEEEecCChhc
Confidence 33455556678999999997 21 1 1234445555555 579999999999986
No 160
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=42.16 E-value=1.2e+02 Score=22.27 Aligned_cols=43 Identities=9% Similarity=0.054 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEc
Q 015684 81 FINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVL 131 (402)
Q Consensus 81 ~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~ 131 (402)
...+.+++....+|++++| +. +.....+... ..+.++|+.+++
T Consensus 20 qt~Kai~kg~~~~v~iA~D-a~----~~vv~~l~~l---ceek~Ip~v~V~ 62 (84)
T PRK13600 20 ETLKALKKDQVTSLIIAED-VE----VYLMTRVLSQ---INQKNIPVSFFK 62 (84)
T ss_pred HHHHHHhcCCceEEEEeCC-CC----HHHHHHHHHH---HHHcCCCEEEEC
Confidence 3455666788999999999 54 2223333332 235799999986
No 161
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=42.04 E-value=93 Score=27.25 Aligned_cols=49 Identities=20% Similarity=0.327 Sum_probs=31.5
Q ss_pred HHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHh-CCCCEEEEcCCCCC
Q 015684 82 INRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIA-SNIPWVAVLGNHDQ 136 (402)
Q Consensus 82 l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~-~~iP~~~v~GNHD~ 136 (402)
+...+.+...|.+++.|=. +- . .+.+.+.++.+.+ .++|++.-|||++.
T Consensus 16 ia~~v~~~gtDaI~VGGS~--gv-t---~~~~~~~v~~ik~~~~lPvilfp~~~~~ 65 (205)
T TIGR01769 16 IAKNAKDAGTDAIMVGGSL--GI-V---ESNLDQTVKKIKKITNLPVILFPGNVNG 65 (205)
T ss_pred HHHHHHhcCCCEEEEcCcC--CC-C---HHHHHHHHHHHHhhcCCCEEEECCCccc
Confidence 4445556678999999872 11 1 1233344444444 57999999999996
No 162
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=41.06 E-value=88 Score=24.08 Aligned_cols=51 Identities=16% Similarity=0.149 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEc
Q 015684 78 TTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVL 131 (402)
Q Consensus 78 ~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~ 131 (402)
..+.+.+.+++.++|+||++---.......-.-....+.+. ..++|+.++|
T Consensus 90 ~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~---~~~~pVlvv~ 140 (140)
T PF00582_consen 90 VADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLR---HAPCPVLVVP 140 (140)
T ss_dssp HHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHH---HTSSEEEEEE
T ss_pred cchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHH---cCCCCEEEeC
Confidence 34666777777889999888762111111111122223333 3678888875
No 163
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=39.90 E-value=34 Score=30.16 Aligned_cols=52 Identities=15% Similarity=0.077 Sum_probs=28.1
Q ss_pred CCEEEEcCCccCCCChhhHHHHHHHHHhHhHhC-CCCEEEEcCCCCCCC-CCCHHHHHHHHH
Q 015684 91 PDLIVFTGDNIFGFDATDAAKSLNAAFAPAIAS-NIPWVAVLGNHDQES-TLSREGVMKHIV 150 (402)
Q Consensus 91 pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~-~iP~~~v~GNHD~~~-~~~~~~~~~~~~ 150 (402)
..-+.+.|| |.+. +..+.++++.+... +.-.+++.| |+-. +....+..+.+.
T Consensus 16 ~~ri~vigD-IHG~-----~~~L~~lL~~i~~~~~~D~li~lG--DlvDrGp~s~~vl~~l~ 69 (218)
T PRK11439 16 WRHIWLVGD-IHGC-----FEQLMRKLRHCRFDPWRDLLISVG--DLIDRGPQSLRCLQLLE 69 (218)
T ss_pred CCeEEEEEc-ccCC-----HHHHHHHHHhcCCCcccCEEEEcC--cccCCCcCHHHHHHHHH
Confidence 346788999 7764 34555566554212 345677778 5432 223334445443
No 164
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=36.91 E-value=1.4e+02 Score=27.17 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHhcCCCEEEEcCCccCC
Q 015684 77 NTTAFINRMISAEKPDLIVFTGDNIFG 103 (402)
Q Consensus 77 ~~~~~l~~~i~~~~pD~vv~~GDli~~ 103 (402)
.+...+.+.++..++| +|++|+.-.+
T Consensus 98 ~ta~~Laa~~~~~~~~-LVl~G~qa~D 123 (260)
T COG2086 98 ATAKALAAAVKKIGPD-LVLTGKQAID 123 (260)
T ss_pred HHHHHHHHHHHhcCCC-EEEEeccccc
Confidence 3456666666677777 6667774443
No 165
>PRK10116 universal stress protein UspC; Provisional
Probab=36.73 E-value=1.4e+02 Score=23.71 Aligned_cols=9 Identities=22% Similarity=0.172 Sum_probs=3.9
Q ss_pred CCCCEEEEc
Q 015684 123 SNIPWVAVL 131 (402)
Q Consensus 123 ~~iP~~~v~ 131 (402)
.++|++++|
T Consensus 130 ~~~pVLvv~ 138 (142)
T PRK10116 130 SEVDVLLVP 138 (142)
T ss_pred CCCCEEEEe
Confidence 344444443
No 166
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=35.49 E-value=12 Score=30.11 Aligned_cols=17 Identities=35% Similarity=0.583 Sum_probs=0.0
Q ss_pred cccccccceehHHHHHH
Q 015684 2 MVHRKKKPALVIVAVLT 18 (402)
Q Consensus 2 ~~~~~~~~~~~~~l~~~ 18 (402)
|+++|||+.++++++++
T Consensus 1 ~~~~~~rl~~~~~~~~~ 17 (131)
T PF03100_consen 1 MKRRKKRLILVVLGLVI 17 (131)
T ss_dssp -----------------
T ss_pred CCcceeehhhHHHHHHH
Confidence 88888988877766633
No 167
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=35.19 E-value=28 Score=31.19 Aligned_cols=28 Identities=32% Similarity=0.374 Sum_probs=20.9
Q ss_pred CeeEEEeccCCCCcccccCCCeeEEecCC
Q 015684 290 DVKAVFTGHDHVNDFCGRLTGIQLCYGGG 318 (402)
Q Consensus 290 ~v~~v~~GH~H~~~~~~~~~gi~~~~~~~ 318 (402)
..+++++||.|. .....++|+.++..|+
T Consensus 191 ~p~vii~Gh~h~-~~~~~~~~~~~vn~Gs 218 (243)
T cd07386 191 VPDILHTGHVHV-YGVGVYRGVLLVNSGT 218 (243)
T ss_pred CCCEEEECCCCc-hHhEEECCEEEEECCC
Confidence 468999999999 4555677877775554
No 168
>PF13941 MutL: MutL protein
Probab=35.12 E-value=84 Score=31.24 Aligned_cols=49 Identities=27% Similarity=0.356 Sum_probs=31.4
Q ss_pred HHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCCCCCC
Q 015684 85 MISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQE 137 (402)
Q Consensus 85 ~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GNHD~~ 137 (402)
.|.+.+||.|+++|= +.+. ..+..-...+.+... ...+| +++.||-+..
T Consensus 119 ~i~~~~PDiILLaGG-tDgG-~~~~il~nA~~La~~-~~~~p-VIyAGN~~a~ 167 (457)
T PF13941_consen 119 EIREIRPDIILLAGG-TDGG-NKEVILHNAEMLAEA-NLRIP-VIYAGNKAAQ 167 (457)
T ss_pred HHhccCCCEEEEeCC-ccCC-chHHHHHHHHHHHhC-CCCCc-EEEECCHHHH
Confidence 356789999999999 6654 343333344555533 35667 4456998863
No 169
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=34.86 E-value=56 Score=29.54 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=26.1
Q ss_pred EEEcCCccCCCCh----hhHHHHHHHHHhHhHhCCCCEEEEcCCCCCC
Q 015684 94 IVFTGDNIFGFDA----TDAAKSLNAAFAPAIASNIPWVAVLGNHDQE 137 (402)
Q Consensus 94 vv~~GDli~~~~~----~~~~~~~~~~l~~~~~~~iP~~~v~GNHD~~ 137 (402)
++++||.++..+. ....+.+.+.++.+...+....+.|| |++.
T Consensus 122 ~lFtGDtlf~~g~gr~f~g~~~~~~~Sl~kl~~l~~~t~i~pg-H~y~ 168 (251)
T PRK10241 122 YLFCGDTLFSGGCGRLFEGTASQMYQSLKKINALPDDTLICCA-HEYT 168 (251)
T ss_pred cEEEcCeeccCCcCCCCCCCHHHHHHHHHHHHcCCCCEEEECC-CCCh
Confidence 6999997766532 11233444555555445556777888 9873
No 170
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=34.72 E-value=47 Score=29.60 Aligned_cols=32 Identities=19% Similarity=0.126 Sum_probs=19.3
Q ss_pred CeeEEEeccCCCCcccccCCCeeEEecCCccCCC
Q 015684 290 DVKAVFTGHDHVNDFCGRLTGIQLCYGGGFGYHA 323 (402)
Q Consensus 290 ~v~~v~~GH~H~~~~~~~~~gi~~~~~~~~g~~~ 323 (402)
+.+.+++||+|.. .....++. ++...++.|++
T Consensus 181 ~~~~vv~GHt~~~-~~~~~~~~-i~IDtGav~gG 212 (234)
T cd07423 181 GDALVVYGHTPVP-EPRWLNNT-INIDTGCVFGG 212 (234)
T ss_pred CCeEEEECCCCCc-cceEeCCE-EEEECCCCCCC
Confidence 4678999999994 33334443 44444445543
No 171
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=34.57 E-value=1e+02 Score=29.39 Aligned_cols=44 Identities=27% Similarity=0.393 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEc
Q 015684 78 TTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVL 131 (402)
Q Consensus 78 ~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~ 131 (402)
.+..+.+.+.+.+||+|+.-|| -. ..+...+.. ...++|++.+-
T Consensus 74 ~~~~l~~~l~~~~pDiv~~~gd-~~--------~~la~a~aa-~~~~ipv~h~~ 117 (365)
T TIGR00236 74 MLEGLEELLLEEKPDIVLVQGD-TT--------TTLAGALAA-FYLQIPVGHVE 117 (365)
T ss_pred HHHHHHHHHHHcCCCEEEEeCC-ch--------HHHHHHHHH-HHhCCCEEEEe
Confidence 3456777788899999999999 22 112112221 12589998774
No 172
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=34.46 E-value=1.8e+02 Score=24.30 Aligned_cols=11 Identities=9% Similarity=0.244 Sum_probs=6.4
Q ss_pred eEEEEEeccCC
Q 015684 44 FKILQVADMHF 54 (402)
Q Consensus 44 ~~i~~iSDlH~ 54 (402)
|||++++|.=.
T Consensus 1 ~~i~~~GDSi~ 11 (183)
T cd04501 1 MRVVCLGDSIT 11 (183)
T ss_pred CeEEEEccccc
Confidence 45666666544
No 173
>COG5510 Predicted small secreted protein [Function unknown]
Probab=34.37 E-value=18 Score=22.73 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=9.4
Q ss_pred CcccccccceehHHHHHHHHHHhccc
Q 015684 1 MMVHRKKKPALVIVAVLTLLCIAPTL 26 (402)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~ 26 (402)
|||+ +.++++++++...++.+|
T Consensus 1 mmk~----t~l~i~~vll~s~llaaC 22 (44)
T COG5510 1 MMKK----TILLIALVLLASTLLAAC 22 (44)
T ss_pred CchH----HHHHHHHHHHHHHHHHHh
Confidence 5654 333333333333344444
No 174
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=34.37 E-value=1.2e+02 Score=26.87 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=32.4
Q ss_pred HHHHHHhcCCCEEEEcCCc-cCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCCCCC
Q 015684 82 INRMISAEKPDLIVFTGDN-IFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQ 136 (402)
Q Consensus 82 l~~~i~~~~pD~vv~~GDl-i~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GNHD~ 136 (402)
+.+.+.+...|++++.|=. ++ .+.+.+.++.+.+..+|++.-|||++.
T Consensus 19 ~~~~~~~~gtdai~vGGS~~vt-------~~~~~~~v~~ik~~~lPvilfp~~~~~ 67 (223)
T TIGR01768 19 IAKAAAESGTDAILIGGSQGVT-------YEKTDTLIEALRRYGLPIILFPSNPTN 67 (223)
T ss_pred HHHHHHhcCCCEEEEcCCCccc-------HHHHHHHHHHHhccCCCEEEeCCCccc
Confidence 3344456789999999973 22 123334455555567999999999986
No 175
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=34.29 E-value=1.7e+02 Score=22.68 Aligned_cols=53 Identities=19% Similarity=0.040 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCCCCC
Q 015684 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQ 136 (402)
Q Consensus 80 ~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GNHD~ 136 (402)
+.+.+.+.+.+||+|.++.= .... ......+.+.++.. ..+-+.+++-|+|-.
T Consensus 40 ~~l~~~~~~~~pdvV~iS~~-~~~~--~~~~~~~i~~l~~~-~~~~~~i~vGG~~~~ 92 (119)
T cd02067 40 EEIVEAAKEEDADAIGLSGL-LTTH--MTLMKEVIEELKEA-GLDDIPVLVGGAIVT 92 (119)
T ss_pred HHHHHHHHHcCCCEEEEecc-cccc--HHHHHHHHHHHHHc-CCCCCeEEEECCCCC
Confidence 45667778899999999875 2221 22223333333332 121355778899855
No 176
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=33.69 E-value=1.7e+02 Score=26.54 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=43.4
Q ss_pred eeecCCCceEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHH
Q 015684 36 LRFRQNGEFKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNA 115 (402)
Q Consensus 36 l~~~~~~~~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~ 115 (402)
++.++.=.-.+.+++|+|......-. .....+.+...+....+|.|++||. -++... ..+.+.+
T Consensus 131 ~r~R~~l~a~v~ilaDV~~kh~~~l~-------------~~~~~~~~~~a~~~~~aDaviVtG~-~TG~~~--~~~~l~~ 194 (254)
T PF03437_consen 131 LRYRKRLGADVKILADVHVKHSSPLA-------------TRDLEEAAKDAVERGGADAVIVTGK-ATGEPP--DPEKLKR 194 (254)
T ss_pred HHHHHHcCCCeEEEeeechhhcccCC-------------CCCHHHHHHHHHHhcCCCEEEECCc-ccCCCC--CHHHHHH
Confidence 44443322337888899987654321 1122244555556779999999999 666532 2222222
Q ss_pred HHhHhHhCCCCEEEEcC
Q 015684 116 AFAPAIASNIPWVAVLG 132 (402)
Q Consensus 116 ~l~~~~~~~iP~~~v~G 132 (402)
.-+ ..++|+++--|
T Consensus 195 vr~---~~~~PVlvGSG 208 (254)
T PF03437_consen 195 VRE---AVPVPVLVGSG 208 (254)
T ss_pred HHh---cCCCCEEEecC
Confidence 222 13478886555
No 177
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=33.61 E-value=38 Score=30.84 Aligned_cols=25 Identities=24% Similarity=0.496 Sum_probs=20.1
Q ss_pred ChhHHHHHHHHHHhcCCCEEEEcCC
Q 015684 75 DLNTTAFINRMISAEKPDLIVFTGD 99 (402)
Q Consensus 75 ~~~~~~~l~~~i~~~~pD~vv~~GD 99 (402)
+.+.-+.+..++++.+||.||+||-
T Consensus 138 E~eqp~~i~~Ll~~~~PDIlViTGH 162 (283)
T TIGR02855 138 EKEMPEKVLDLIEEVRPDILVITGH 162 (283)
T ss_pred chhchHHHHHHHHHhCCCEEEEeCc
Confidence 3444477888888999999999995
No 178
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=33.40 E-value=87 Score=29.70 Aligned_cols=53 Identities=15% Similarity=0.318 Sum_probs=31.7
Q ss_pred ChhHHHHHHHHHHhcCCCEEEEcCCccCCCCh-hhHHHHHHHHHhHhHh--CCCCE
Q 015684 75 DLNTTAFINRMISAEKPDLIVFTGDNIFGFDA-TDAAKSLNAAFAPAIA--SNIPW 127 (402)
Q Consensus 75 ~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~-~~~~~~~~~~l~~~~~--~~iP~ 127 (402)
..+.++.+.++++..+||+||++|=.+-+.-+ ....+.+.++...+.+ .++|+
T Consensus 223 ~m~~~E~f~~Al~~fqPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP~gip~ 278 (478)
T KOG4184|consen 223 HMRAVEQFTDALKMFQPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIPTGIPV 278 (478)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEechhHHhhhhHHHHHHHHHHHHHHHhcCCCCCch
Confidence 34567777788888999999999974443322 2233344444444432 35553
No 179
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=33.29 E-value=60 Score=29.18 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=23.7
Q ss_pred CEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCCCCCC
Q 015684 92 DLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQE 137 (402)
Q Consensus 92 D~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GNHD~~ 137 (402)
.=-++.||.+ +.|-. +.+.+.-.+.--....-.+..+.|||+..
T Consensus 71 t~YLFLGDyV-DRG~~-SvEt~lLLl~lK~rYP~ritLiRGNHEsR 114 (303)
T KOG0372|consen 71 TNYLFLGDYV-DRGYY-SVETFLLLLALKVRYPDRITLIRGNHESR 114 (303)
T ss_pred CceEeecchh-ccccc-hHHHHHHHHHHhhcCcceeEEeeccchhh
Confidence 3467899954 44422 22333222211112344589999999974
No 180
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=33.23 E-value=2e+02 Score=25.79 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=43.1
Q ss_pred eEEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhC
Q 015684 44 FKILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIAS 123 (402)
Q Consensus 44 ~~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~ 123 (402)
-+|-+++|+|........ .....+.+.+.++.-.+|.||+||= -++... ..+.+...-+ ..
T Consensus 144 ~~v~vlADv~VKHa~~l~-------------~~~~~~~v~dtver~~aDaVI~tG~-~TG~~~--d~~el~~a~~---~~ 204 (263)
T COG0434 144 SRVKVLADVHVKHAVHLG-------------NRSLEEAVKDTVERGLADAVIVTGS-RTGSPP--DLEELKLAKE---AV 204 (263)
T ss_pred CCcEEEeecchhcccccC-------------CcCHHHHHHHHHHccCCCEEEEecc-cCCCCC--CHHHHHHHHh---cc
Confidence 467788999987654321 1123355666677789999999999 666532 2223322221 14
Q ss_pred CCCEEEEcC
Q 015684 124 NIPWVAVLG 132 (402)
Q Consensus 124 ~iP~~~v~G 132 (402)
+.|+++--|
T Consensus 205 ~~pvlvGSG 213 (263)
T COG0434 205 DTPVLVGSG 213 (263)
T ss_pred CCCEEEecC
Confidence 588887655
No 181
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=33.18 E-value=1.8e+02 Score=22.92 Aligned_cols=49 Identities=20% Similarity=0.311 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCCCC
Q 015684 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHD 135 (402)
Q Consensus 80 ~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GNHD 135 (402)
+...+.+++.+..+|+++.| +. +.........+. ...++|+.+|+-=++
T Consensus 33 ~e~~Kai~~g~a~LVviA~D-v~----P~~~~~~l~~lc--~~~~vpyv~V~sk~~ 81 (116)
T COG1358 33 NEVTKAIERGKAKLVVIAED-VS----PEELVKHLPALC--EEKNVPYVYVGSKKE 81 (116)
T ss_pred HHHHHHHHcCCCcEEEEecC-CC----HHHHHHHHHHHH--HhcCCCEEEeCCHHH
Confidence 34456667789999999999 53 222222112222 247999999865443
No 182
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=32.88 E-value=1.2e+02 Score=25.29 Aligned_cols=49 Identities=29% Similarity=0.363 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCCCC
Q 015684 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHD 135 (402)
Q Consensus 80 ~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GNHD 135 (402)
+...+.+..++||++++.-| .+. ..+.+ ..+..+.+.++|+.++.==-|
T Consensus 68 ~v~~~~l~~~~~D~ii~VvD-a~~-----l~r~l-~l~~ql~e~g~P~vvvlN~~D 116 (156)
T PF02421_consen 68 RVARDYLLSEKPDLIIVVVD-ATN-----LERNL-YLTLQLLELGIPVVVVLNKMD 116 (156)
T ss_dssp HHHHHHHHHTSSSEEEEEEE-GGG-----HHHHH-HHHHHHHHTTSSEEEEEETHH
T ss_pred HHHHHHHhhcCCCEEEEECC-CCC-----HHHHH-HHHHHHHHcCCCEEEEEeCHH
Confidence 33455666789999999999 432 22333 344455568999998874444
No 183
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.59 E-value=1.5e+02 Score=24.41 Aligned_cols=65 Identities=18% Similarity=0.289 Sum_probs=41.3
Q ss_pred EEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCC
Q 015684 45 KILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASN 124 (402)
Q Consensus 45 ~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~ 124 (402)
-+++++|+|+-..... .-..+.+.+--.+..-|+++|. +. +.+.++.++..-
T Consensus 2 LvL~lgD~HiP~Ra~~-----------------Lp~KFkklLvPgki~hilctGN-lc---s~e~~dylk~l~------- 53 (183)
T KOG3325|consen 2 LVLVLGDLHIPHRAND-----------------LPAKFKKLLVPGKIQHILCTGN-LC---SKESYDYLKTLS------- 53 (183)
T ss_pred EEEEeccccCCccccc-----------------cCHHHHhccCCCceeEEEEeCC-cc---hHHHHHHHHhhC-------
Confidence 4789999998654321 1134566665568899999999 54 234454443322
Q ss_pred CCEEEEcCCCCCC
Q 015684 125 IPWVAVLGNHDQE 137 (402)
Q Consensus 125 iP~~~v~GNHD~~ 137 (402)
--+-+|.|--|..
T Consensus 54 ~dvhiVrGeFD~~ 66 (183)
T KOG3325|consen 54 SDVHIVRGEFDEN 66 (183)
T ss_pred CCcEEEecccCcc
Confidence 2478899987763
No 184
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=32.24 E-value=46 Score=30.53 Aligned_cols=26 Identities=27% Similarity=0.560 Sum_probs=20.7
Q ss_pred CChhHHHHHHHHHHhcCCCEEEEcCC
Q 015684 74 SDLNTTAFINRMISAEKPDLIVFTGD 99 (402)
Q Consensus 74 ~~~~~~~~l~~~i~~~~pD~vv~~GD 99 (402)
.+.+.-+.+.+++.+.+||.||+||-
T Consensus 138 ~E~eqp~~i~~Ll~~~~PDIlViTGH 163 (287)
T PF05582_consen 138 PEKEQPEKIYRLLEEYRPDILVITGH 163 (287)
T ss_pred chHHhhHHHHHHHHHcCCCEEEEeCc
Confidence 34445577888888999999999996
No 185
>PF13258 DUF4049: Domain of unknown function (DUF4049)
Probab=31.61 E-value=70 Score=28.43 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=12.8
Q ss_pred CCCEEEEcCCCCCCCC
Q 015684 124 NIPWVAVLGNHDQEST 139 (402)
Q Consensus 124 ~iP~~~v~GNHD~~~~ 139 (402)
+..|.+..|||+...+
T Consensus 127 nknvvvlagnhein~n 142 (318)
T PF13258_consen 127 NKNVVVLAGNHEINFN 142 (318)
T ss_pred ccceEEEecCceeccC
Confidence 4469999999998654
No 186
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=31.21 E-value=1.9e+02 Score=26.04 Aligned_cols=36 Identities=14% Similarity=0.277 Sum_probs=20.9
Q ss_pred HHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCC
Q 015684 86 ISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIP 126 (402)
Q Consensus 86 i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP 126 (402)
.++.+...+|++||. ... ..++.+.+.+.+. +.|+|
T Consensus 77 Yk~gk~~~ilvSGg~-~~~-~~~Ea~~M~~yLi---~~GVp 112 (239)
T PRK10834 77 YNSGKVNYLLLSGDN-ALQ-SYNEPMTMRKDLI---AAGVD 112 (239)
T ss_pred HHhCCCCEEEEeCCC-CCC-CCCHHHHHHHHHH---HcCCC
Confidence 345678899999994 322 2233334444433 46888
No 187
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=30.67 E-value=45 Score=18.02 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=8.3
Q ss_pred ehHHHHHHHHHHhccc
Q 015684 11 LVIVAVLTLLCIAPTL 26 (402)
Q Consensus 11 ~~~~l~~~~~~~~~~~ 26 (402)
+.++++|+++.++..|
T Consensus 6 FalivVLFILLiIvG~ 21 (24)
T PF09680_consen 6 FALIVVLFILLIIVGA 21 (24)
T ss_pred chhHHHHHHHHHHhcc
Confidence 4455555555555443
No 188
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=30.30 E-value=1.7e+02 Score=24.69 Aligned_cols=12 Identities=17% Similarity=0.349 Sum_probs=6.8
Q ss_pred ceEEEEEeccCC
Q 015684 43 EFKILQVADMHF 54 (402)
Q Consensus 43 ~~~i~~iSDlH~ 54 (402)
++||+.+.|.=.
T Consensus 2 ~~~i~~~GDSit 13 (191)
T cd01836 2 PLRLLVLGDSTA 13 (191)
T ss_pred CeEEEEEecccc
Confidence 346666666543
No 189
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.09 E-value=56 Score=26.25 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=31.5
Q ss_pred ccceehHHHHHHHHHHhcccccccCCCcceee------cCCCceEEEEEeccCCc
Q 015684 7 KKPALVIVAVLTLLCIAPTLAVNAKQERKLRF------RQNGEFKILQVADMHFA 55 (402)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~i~~iSDlH~~ 55 (402)
|+.+..++|++.+++|+...++++...-.|.. +++|.+.|.++.+-+--
T Consensus 3 ~~~~~~l~Ll~aa~sL~~~~aaaaeatgkLTvti~glknkqGqic~aVf~s~qgf 57 (151)
T COG4704 3 NISRRRLFLLAAALSLVSLKAAAAEATGKLTVTINGLKNKQGQICFAVFASEQGF 57 (151)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHhhcCceEEEEcchhhccCcEEEEEEeccccC
Confidence 34555677777777776666555544433433 34588999999987744
No 190
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=29.76 E-value=2.5e+02 Score=23.04 Aligned_cols=9 Identities=33% Similarity=0.431 Sum_probs=5.3
Q ss_pred EEEEEeccC
Q 015684 45 KILQVADMH 53 (402)
Q Consensus 45 ~i~~iSDlH 53 (402)
||+++.|.=
T Consensus 2 ~i~~~GDSi 10 (177)
T cd01822 2 TILALGDSL 10 (177)
T ss_pred eEEEEcccc
Confidence 566666644
No 191
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=29.68 E-value=91 Score=27.11 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=23.2
Q ss_pred cCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCE--------------EEEcCCCCCC
Q 015684 89 EKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPW--------------VAVLGNHDQE 137 (402)
Q Consensus 89 ~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~--------------~~v~GNHD~~ 137 (402)
..||+|++++= . ... .++.+....+||+ |++|||.|..
T Consensus 107 ~~Pdlliv~dp-~------~~~----~Av~EA~~l~IP~Iai~DTn~dp~~vdypIP~Ndds~ 158 (196)
T TIGR01012 107 REPEVVVVTDP-R------ADH----QALKEASEVGIPIVALCDTDNPLRYVDLVIPTNNKGR 158 (196)
T ss_pred CCCCEEEEECC-c------ccc----HHHHHHHHcCCCEEEEeeCCCCCccCCEEECCCCchH
Confidence 57999999732 1 111 2233333468885 7889998863
No 192
>PF05643 DUF799: Putative bacterial lipoprotein (DUF799); InterPro: IPR008517 This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=29.06 E-value=62 Score=28.48 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcccccccCCCc-ceeecCCCceEEEEEeccCCc
Q 015684 13 IVAVLTLLCIAPTLAVNAKQER-KLRFRQNGEFKILQVADMHFA 55 (402)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~i~~iSDlH~~ 55 (402)
+++.|+++.++.+|+..+.+.. =-.|.+..+-+|+++-=+--.
T Consensus 4 l~~~l~~~l~LsgCa~~~~~~~dy~a~~~~kPrSILVlPp~N~S 47 (215)
T PF05643_consen 4 LILGLAAALLLSGCATTKPPPYDYTAFKESKPRSILVLPPVNES 47 (215)
T ss_pred HHHHHHHHHHHhhccCCCCccccHHHHhcCCCceEEEeCCCCCC
Confidence 5666666666777754433211 234566677888888655443
No 193
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=28.16 E-value=85 Score=27.67 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=24.1
Q ss_pred CCCE-EEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCCCCCC
Q 015684 90 KPDL-IVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQE 137 (402)
Q Consensus 90 ~pD~-vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GNHD~~ 137 (402)
-||- -|+.||.+ +.|-- +.+.+.-.+--..+....+..+.|||+..
T Consensus 71 vP~tnYiFmGDfV-DRGyy-SLEtfT~l~~LkaryP~~ITLlRGNHEsR 117 (306)
T KOG0373|consen 71 VPDTNYIFMGDFV-DRGYY-SLETFTLLLLLKARYPAKITLLRGNHESR 117 (306)
T ss_pred CCCcceEEecccc-ccccc-cHHHHHHHHHHhhcCCceeEEeeccchhh
Confidence 4443 57889954 44421 22233222221112344588899999973
No 194
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=27.98 E-value=2.1e+02 Score=21.10 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCCCCC
Q 015684 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQ 136 (402)
Q Consensus 80 ~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GNHD~ 136 (402)
..+.+.+....||++++-.+ +.+....+ .+ +.+... ...+|++++-.++|.
T Consensus 33 ~~~~~~~~~~~~d~iiid~~-~~~~~~~~---~~-~~i~~~-~~~~~ii~~t~~~~~ 83 (112)
T PF00072_consen 33 EEALELLKKHPPDLIIIDLE-LPDGDGLE---LL-EQIRQI-NPSIPIIVVTDEDDS 83 (112)
T ss_dssp HHHHHHHHHSTESEEEEESS-SSSSBHHH---HH-HHHHHH-TTTSEEEEEESSTSH
T ss_pred HHHHHHhcccCceEEEEEee-eccccccc---cc-cccccc-cccccEEEecCCCCH
Confidence 34556667789999999988 55432222 22 222221 157788888776663
No 195
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=27.64 E-value=1.2e+02 Score=24.31 Aligned_cols=10 Identities=40% Similarity=0.737 Sum_probs=9.2
Q ss_pred CCCEEEEcCC
Q 015684 90 KPDLIVFTGD 99 (402)
Q Consensus 90 ~pD~vv~~GD 99 (402)
+.|+||.+|-
T Consensus 58 ~~DlvittGG 67 (133)
T cd00758 58 EADLVLTTGG 67 (133)
T ss_pred cCCEEEECCC
Confidence 4999999999
No 196
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=27.22 E-value=1.8e+02 Score=27.41 Aligned_cols=45 Identities=31% Similarity=0.424 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCC
Q 015684 79 TAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGN 133 (402)
Q Consensus 79 ~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GN 133 (402)
...+.+.+.+.+||+|+..|| .. ..+...+.. ...++|++.+.|+
T Consensus 77 ~~~l~~~l~~~~pDvV~~~g~-~~--------~~~~~~~aa-~~~~iPvv~~~~g 121 (363)
T cd03786 77 LIGLEAVLLEEKPDLVLVLGD-TN--------ETLAAALAA-FKLGIPVAHVEAG 121 (363)
T ss_pred HHHHHHHHHHhCCCEEEEeCC-ch--------HHHHHHHHH-HHcCCCEEEEecc
Confidence 344555666789999999999 21 111111111 1258999988765
No 197
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=26.79 E-value=2.2e+02 Score=25.92 Aligned_cols=49 Identities=14% Similarity=0.279 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCCCCC
Q 015684 81 FINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQ 136 (402)
Q Consensus 81 ~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GNHD~ 136 (402)
.+...|+..+.-+||+++| ++. .....+...+ ....+||+.++.+=-+.
T Consensus 139 ~VtklIekkKAkLVIIA~D-VsP----~t~kk~LP~L--C~k~~VPY~iv~sK~eL 187 (266)
T PTZ00365 139 HVTDLVEYKKAKLVVIAHD-VDP----IELVCFLPAL--CRKKEVPYCIIKGKSRL 187 (266)
T ss_pred HHHHHHHhCCccEEEEeCC-CCH----HHHHHHHHHH--HhccCCCEEEECCHHHH
Confidence 3445566688999999999 542 2222221122 22469999988764443
No 198
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=26.23 E-value=4.8e+02 Score=24.63 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=18.7
Q ss_pred hcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEE
Q 015684 88 AEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAV 130 (402)
Q Consensus 88 ~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v 130 (402)
..++|.|++++= .. ..+...++.+.+.++|++.+
T Consensus 78 ~~~vdgIiv~~~------d~---~al~~~l~~a~~~gIpVV~~ 111 (336)
T PRK15408 78 NQGYNAIIVSAV------SP---DGLCPALKRAMQRGVKVLTW 111 (336)
T ss_pred HcCCCEEEEecC------CH---HHHHHHHHHHHHCCCeEEEe
Confidence 467888777541 01 12223444444568887765
No 199
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=26.14 E-value=3e+02 Score=25.08 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=40.7
Q ss_pred EEEEEeccCCcCCCCCCCCCCCcccccCCCChhHHHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCC
Q 015684 45 KILQVADMHFANGKTTPCLDVLPSQVAGCSDLNTTAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASN 124 (402)
Q Consensus 45 ~i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~ 124 (402)
.+.+++|+|....... .+....+.+.+.+....+|.|++||- -++.. ..++.+.+.-+. ...
T Consensus 139 ~v~i~adV~~kh~~~l-------------~~~~~~e~a~~~~~~~~aDavivtG~-~TG~~--~d~~~l~~vr~~--~~~ 200 (257)
T TIGR00259 139 EVKILADIVVKHAVHL-------------GNRDLESIALDTVERGLADAVILSGK-TTGTE--VDLELLKLAKET--VKD 200 (257)
T ss_pred CcEEEeceeecccCcC-------------CCCCHHHHHHHHHHhcCCCEEEECcC-CCCCC--CCHHHHHHHHhc--cCC
Confidence 6788889887755421 12223344455555567999999998 55543 334444332221 135
Q ss_pred CCEEEEcCC
Q 015684 125 IPWVAVLGN 133 (402)
Q Consensus 125 iP~~~v~GN 133 (402)
.|+++--|-
T Consensus 201 ~PvllggGv 209 (257)
T TIGR00259 201 TPVLAGSGV 209 (257)
T ss_pred CeEEEECCC
Confidence 798776553
No 200
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=25.93 E-value=1.6e+02 Score=26.36 Aligned_cols=46 Identities=15% Similarity=0.309 Sum_probs=32.1
Q ss_pred HHHHhcCCCEEEEcCCc-cCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCCCCC
Q 015684 84 RMISAEKPDLIVFTGDN-IFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQ 136 (402)
Q Consensus 84 ~~i~~~~pD~vv~~GDl-i~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GNHD~ 136 (402)
+.+.+...|++++.|=. ++ .+.+.+.++.+.+..+|++.-|||++.
T Consensus 26 ~~~~~~gtdai~vGGS~~vt-------~~~~~~~v~~ik~~~lPvilfp~~~~~ 72 (232)
T PRK04169 26 EAICESGTDAIIVGGSDGVT-------EENVDELVKAIKEYDLPVILFPGNIEG 72 (232)
T ss_pred HHHHhcCCCEEEEcCCCccc-------hHHHHHHHHHHhcCCCCEEEeCCCccc
Confidence 44456788999999973 22 223444555555568999999999996
No 201
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=25.87 E-value=2.4e+02 Score=25.60 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCCCCC
Q 015684 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQ 136 (402)
Q Consensus 80 ~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GNHD~ 136 (402)
..+...|+..+.-+||+++| ++ +.....+...+- ...+||+.++.+-.+.
T Consensus 138 n~VtkaIekkKAkLVIIA~D-Vs----Pie~vk~LpaLC--rk~~VPY~iVktKaeL 187 (263)
T PTZ00222 138 QEVTRAIEKKQARMVVIANN-VD----PVELVLWMPNLC--RANKIPYAIVKDMARL 187 (263)
T ss_pred HHHHHHHHcCCceEEEEeCC-CC----HHHHHHHHHHHH--HhcCCCEEEECCHHHH
Confidence 34566777789999999999 54 222222222222 2469999999876554
No 202
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=24.22 E-value=79 Score=28.65 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=25.0
Q ss_pred cCCCE-EEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCCCCC
Q 015684 89 EKPDL-IVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQ 136 (402)
Q Consensus 89 ~~pD~-vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GNHD~ 136 (402)
..||. -++.||.+..... +.+...-.+.--....-.+.+++|||+.
T Consensus 84 ~~pdtnylfmGDyvdrGy~--SvetVS~lva~Kvry~~rvtilrGNHEs 130 (319)
T KOG0371|consen 84 LAPDTNYLFMGDYVDRGYY--SVETVSLLVALKVRYPDRVTILRGNHES 130 (319)
T ss_pred CCCCcceeeeeeecccccc--hHHHHHHHHHhhccccceeEEecCchHH
Confidence 56664 6778995554322 2222222222111223458999999997
No 203
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=23.77 E-value=2e+02 Score=26.10 Aligned_cols=46 Identities=20% Similarity=0.183 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEcC
Q 015684 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLG 132 (402)
Q Consensus 80 ~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~G 132 (402)
+.+.+.+++.+-=.++.+|| -. .|......++.+...++++-++||
T Consensus 71 ~~i~~~~~~g~~Vv~L~sGD-P~------~yg~~~~l~~~l~~~~i~veiiPG 116 (257)
T PRK15473 71 DLMEAGVKAGKTVVRLQTGD-VS------LYGSIREQGEELTKRGIDFQVVPG 116 (257)
T ss_pred HHHHHHHHCCCeEEEEeCcC-ch------hhhhHHHHHHHHHHCCCCEEEeCC
Confidence 33444333333345666899 22 233333444444456889999999
No 204
>PRK04036 DNA polymerase II small subunit; Validated
Probab=23.67 E-value=58 Score=32.92 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=21.4
Q ss_pred eeEEEeccCCCCcccccCCCeeEEecCC
Q 015684 291 VKAVFTGHDHVNDFCGRLTGIQLCYGGG 318 (402)
Q Consensus 291 v~~v~~GH~H~~~~~~~~~gi~~~~~~~ 318 (402)
.+++++||.|.. ....++|+.++..|+
T Consensus 441 Pdv~~~GH~H~~-~~~~~~g~~~IN~gs 467 (504)
T PRK04036 441 PDIFHTGHVHIN-GYGKYRGVLLINSGT 467 (504)
T ss_pred CCEEEeCCCCcc-ceEEECCEEEEECCc
Confidence 489999999994 556788888876665
No 205
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=23.44 E-value=36 Score=28.39 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=10.7
Q ss_pred CcccccccceehHHHH
Q 015684 1 MMVHRKKKPALVIVAV 16 (402)
Q Consensus 1 ~~~~~~~~~~~~~~l~ 16 (402)
|+.+|+||+.++++++
T Consensus 1 M~~~r~rRl~~v~~~~ 16 (159)
T PRK13150 1 MNLRRKNRLWVVCAVL 16 (159)
T ss_pred CChhhhhHHHHHHHHH
Confidence 6677788876655554
No 206
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=23.39 E-value=1.2e+02 Score=24.90 Aligned_cols=46 Identities=4% Similarity=-0.004 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEc
Q 015684 79 TAFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVL 131 (402)
Q Consensus 79 ~~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~ 131 (402)
.+.+.+.+.+.++|-|+++=+ -. ..+.+.+.++.+.+.++.+.++|
T Consensus 130 ~~~l~~~~~~~~id~v~ial~-~~------~~~~i~~ii~~~~~~~v~v~~vP 175 (175)
T PF13727_consen 130 LDDLPELVREHDIDEVIIALP-WS------EEEQIKRIIEELENHGVRVRVVP 175 (175)
T ss_dssp GGGHHHHHHHHT--EEEE--T-TS-------HHHHHHHHHHHHTTT-EEEE--
T ss_pred HHHHHHHHHhCCCCEEEEEcC-cc------CHHHHHHHHHHHHhCCCEEEEeC
Confidence 355778888899999999966 21 23466677777777899998887
No 207
>PF12393 Dr_adhesin: Dr family adhesin ; InterPro: IPR021020 The Dr family of adhesins bind to the Dr blood group antigen component of decay-accelerating factor. These proteins contain both fimbriated and afimbriated adherence structures and mediate adherence of uropathogenic Escherichia coli to the urinary tract []. They also confer the mannose-resistant hemagglutination phenotype, which can be inhibited by chloramphenicol. The N-terminal portion of the mature protein is thought to be responsible for chloramphenicol sensitivity []. This entry represents the signal peptide region necessary for protein secretion to the cell surface.
Probab=23.24 E-value=78 Score=16.53 Aligned_cols=14 Identities=0% Similarity=-0.047 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhccc
Q 015684 13 IVAVLTLLCIAPTL 26 (402)
Q Consensus 13 ~~l~~~~~~~~~~~ 26 (402)
++++..++|++...
T Consensus 4 laiMaa~s~~~~v~ 17 (21)
T PF12393_consen 4 LAIMAAASMMTAVG 17 (21)
T ss_pred HHHHHHHHHHHHhc
Confidence 77787777776543
No 208
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.00 E-value=4e+02 Score=28.61 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=33.8
Q ss_pred EEEEEEeCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCc-cccCCCCCeEEEEec
Q 015684 191 LNLYFLDSGDYSTVPSVPGYGWIKPSQQFWFEQTSARLQRAYMSKP-AAQKAPAPGLVYFHI 251 (402)
Q Consensus 191 ~~l~~lDs~~~~~~~~~~~~g~i~~~q~~Wl~~~l~~l~~~~~~~~-~~~~~~~~~iv~~H~ 251 (402)
+.++..|-+.. -.--+|.+=.+|.+++.+..+.+-..|++.+ -+.+...-+|++.|-
T Consensus 133 ~DFFaVDFnEe----~tAm~G~~l~dQtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHS 190 (973)
T KOG3724|consen 133 FDFFAVDFNEE----FTAMHGHILLDQTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHS 190 (973)
T ss_pred cceEEEcccch----hhhhccHhHHHHHHHHHHHHHHHHHHhhcccccCCCCCceEEEEecc
Confidence 34666676311 1113577888999999988777766665521 112223447777775
No 209
>PF07981 Plasmod_MYXSPDY: Plasmodium repeat_MYXSPDY; InterPro: IPR012598 This repeat is found in two hypothetical Plasmodium proteins.
Probab=22.66 E-value=69 Score=15.55 Aligned_cols=15 Identities=20% Similarity=0.510 Sum_probs=10.7
Q ss_pred ecCCCceEEEEEecc
Q 015684 38 FRQNGEFKILQVADM 52 (402)
Q Consensus 38 ~~~~~~~~i~~iSDl 52 (402)
++++=+++++++.|+
T Consensus 3 ~SPdytL~~v~Lpdt 17 (17)
T PF07981_consen 3 FSPDYTLRLVQLPDT 17 (17)
T ss_pred cCCCceEEEEecCCC
Confidence 345667888888874
No 210
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=22.43 E-value=2.6e+02 Score=20.62 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEc
Q 015684 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVL 131 (402)
Q Consensus 80 ~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~ 131 (402)
....+.+...++-+||++.| +... ........+. ...++|++.++
T Consensus 21 ~~v~k~l~~~~~~lvilA~d-~~~~----~~~~~l~~~c--~~~~Ip~~~~~ 65 (95)
T PF01248_consen 21 KEVLKALKKGKAKLVILAED-CSPD----SIKKHLPALC--EEKNIPYVFVP 65 (95)
T ss_dssp HHHHHHHHTTCESEEEEETT-SSSG----HHHHHHHHHH--HHTTEEEEEES
T ss_pred HHHHHHHHcCCCcEEEEcCC-CChh----hhcccchhhe--eccceeEEEEC
Confidence 33556667789999999999 5432 2223122222 24799998887
No 211
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=21.95 E-value=48 Score=27.73 Aligned_cols=16 Identities=31% Similarity=0.289 Sum_probs=10.5
Q ss_pred CcccccccceehHHHH
Q 015684 1 MMVHRKKKPALVIVAV 16 (402)
Q Consensus 1 ~~~~~~~~~~~~~~l~ 16 (402)
|+.+|+||+.++++++
T Consensus 1 M~~~~~rRl~~~~~~~ 16 (160)
T PRK13165 1 MNPRRKKRLWLACAVL 16 (160)
T ss_pred CCccchhhHHHHHHHH
Confidence 6677788876555544
No 212
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=21.92 E-value=1e+02 Score=26.59 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=23.8
Q ss_pred CChhHHHHHHHHHHhcCCCEEEEcCCccCCC
Q 015684 74 SDLNTTAFINRMISAEKPDLIVFTGDNIFGF 104 (402)
Q Consensus 74 ~~~~~~~~l~~~i~~~~pD~vv~~GDli~~~ 104 (402)
...+..+.+.+.+++.+||+|+..|= --+.
T Consensus 44 ~f~~s~~~l~~~i~~~qPd~vl~iG~-A~GR 73 (207)
T COG2039 44 VFKKSIDALVQAIAEVQPDLVLAIGQ-AGGR 73 (207)
T ss_pred cHHHHHHHHHHHHHhhCCCeEEEecc-cCCC
Confidence 34566788888899999999999997 4444
No 213
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=21.90 E-value=40 Score=28.01 Aligned_cols=16 Identities=38% Similarity=0.378 Sum_probs=9.9
Q ss_pred CcccccccceehHHHH
Q 015684 1 MMVHRKKKPALVIVAV 16 (402)
Q Consensus 1 ~~~~~~~~~~~~~~l~ 16 (402)
|+.+||||+.++++++
T Consensus 1 M~~~r~rRl~~v~~~~ 16 (155)
T PRK13159 1 MNATRKQRLWLVIGVL 16 (155)
T ss_pred CChhhhhHHHHHHHHH
Confidence 6667777775555444
No 214
>PF15284 PAGK: Phage-encoded virulence factor
Probab=21.38 E-value=29 Score=23.58 Aligned_cols=7 Identities=29% Similarity=0.059 Sum_probs=3.8
Q ss_pred ccccccc
Q 015684 2 MVHRKKK 8 (402)
Q Consensus 2 ~~~~~~~ 8 (402)
||+.|+.
T Consensus 1 Mkk~ksi 7 (61)
T PF15284_consen 1 MKKFKSI 7 (61)
T ss_pred ChHHHHH
Confidence 6665543
No 215
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=21.27 E-value=73 Score=21.61 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=10.0
Q ss_pred cccccccceehHHHHHH
Q 015684 2 MVHRKKKPALVIVAVLT 18 (402)
Q Consensus 2 ~~~~~~~~~~~~~l~~~ 18 (402)
|++||+.-...++|++.
T Consensus 1 ~r~k~~~~mtriVLLIS 17 (59)
T PF11119_consen 1 MRRKKNSRMTRIVLLIS 17 (59)
T ss_pred CCCcccchHHHHHHHHH
Confidence 56666665555666533
No 216
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=21.07 E-value=2.9e+02 Score=24.44 Aligned_cols=52 Identities=12% Similarity=0.176 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCCEEEEcCCc-cCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCCCCCC
Q 015684 80 AFINRMISAEKPDLIVFTGDN-IFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQE 137 (402)
Q Consensus 80 ~~l~~~i~~~~pD~vv~~GDl-i~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GNHD~~ 137 (402)
..+.+.+.+...|++++.|=. ++ +..+...+.+++..+ .+|++.-|||++.-
T Consensus 15 ~~~~~~~~~~gtdai~vGGS~~v~-----~~~~~~~~~ik~~~~-~~Pvilfp~~~~~i 67 (219)
T cd02812 15 EEIAKLAEESGTDAIMVGGSDGVS-----STLDNVVRLIKRIRR-PVPVILFPSNPEAV 67 (219)
T ss_pred HHHHHHHHhcCCCEEEECCccchh-----hhHHHHHHHHHHhcC-CCCEEEeCCCcccc
Confidence 345566655778999999973 21 122333344444322 59999999999963
No 217
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=20.83 E-value=1.8e+02 Score=27.81 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=26.8
Q ss_pred hcCCCEEEEc---CCccCCCChhhHHHHHHHHHhHhHhCCCCEE-EEcCC
Q 015684 88 AEKPDLIVFT---GDNIFGFDATDAAKSLNAAFAPAIASNIPWV-AVLGN 133 (402)
Q Consensus 88 ~~~pD~vv~~---GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~-~v~GN 133 (402)
+.+||-|+++ || +...+.....++.+....+|++ +++|+
T Consensus 218 ~~~pDGiflSNGPGD-------P~~~~~~i~~ik~l~~~~iPifGICLGH 260 (368)
T COG0505 218 ALNPDGIFLSNGPGD-------PAPLDYAIETIKELLGTKIPIFGICLGH 260 (368)
T ss_pred hhCCCEEEEeCCCCC-------hhHHHHHHHHHHHHhccCCCeEEEcHHH
Confidence 4788888876 45 4555555566777777788977 66774
No 218
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=20.69 E-value=1.8e+02 Score=26.96 Aligned_cols=15 Identities=33% Similarity=0.601 Sum_probs=12.0
Q ss_pred cCCCEEEEcCCccCC
Q 015684 89 EKPDLIVFTGDNIFG 103 (402)
Q Consensus 89 ~~pD~vv~~GDli~~ 103 (402)
.++|+|+++||--.+
T Consensus 15 d~lDvilVtGDAYVD 29 (302)
T PF08497_consen 15 DELDVILVTGDAYVD 29 (302)
T ss_pred ccccEEEEeCccccc
Confidence 689999999993333
No 219
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.68 E-value=2.9e+02 Score=22.25 Aligned_cols=51 Identities=22% Similarity=0.297 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCEEEEcC---CccCCCChhhHHHHHHHHHhHhHhC--CCCEEEE
Q 015684 80 AFINRMISAEKPDLIVFTG---DNIFGFDATDAAKSLNAAFAPAIAS--NIPWVAV 130 (402)
Q Consensus 80 ~~l~~~i~~~~pD~vv~~G---Dli~~~~~~~~~~~~~~~l~~~~~~--~iP~~~v 130 (402)
+.+...+...+||+|++.. |...........+.+.+.++.+... +++++++
T Consensus 30 ~~~~~~~~~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~ 85 (157)
T cd01833 30 AAAADWVLAAKPDVVLLHLGTNDLVLNRDPDTAPDRLRALIDQMRAANPDVKIIVA 85 (157)
T ss_pred HHhhhccccCCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3444555568999988854 6333323334445555666655443 4455544
No 220
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=20.22 E-value=4.3e+02 Score=20.63 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=24.5
Q ss_pred EEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCC
Q 015684 93 LIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGN 133 (402)
Q Consensus 93 ~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GN 133 (402)
-|++.+| ..-.++.+.+.++.+.+.|+.-..+.+|
T Consensus 87 ~v~I~aD------~~~~~~~vv~v~d~~~~aG~~~v~l~t~ 121 (122)
T TIGR02803 87 TIFFRAD------KTVDYGDLMKVMNLLRQAGYLKIGLVGL 121 (122)
T ss_pred eEEEEcC------CCCCHHHHHHHHHHHHHcCCCEEEEEec
Confidence 4778888 3445677888888887888875555444
No 221
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=20.07 E-value=4.3e+02 Score=20.60 Aligned_cols=48 Identities=13% Similarity=-0.130 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhC--CCCEEEEcCC
Q 015684 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIAS--NIPWVAVLGN 133 (402)
Q Consensus 80 ~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~--~iP~~~v~GN 133 (402)
+.+.+.+.+.+||+|++++- .. .....+.+.+..+.+. ..+.+++-|+
T Consensus 40 e~~~~~a~~~~~d~V~iS~~-~~-----~~~~~~~~~~~~L~~~~~~~i~i~~GG~ 89 (122)
T cd02071 40 EEIVEAAIQEDVDVIGLSSL-SG-----GHMTLFPEVIELLRELGAGDILVVGGGI 89 (122)
T ss_pred HHHHHHHHHcCCCEEEEccc-ch-----hhHHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 45667777899999999987 22 1222333334433333 2345666676
No 222
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=20.03 E-value=3.1e+02 Score=24.12 Aligned_cols=51 Identities=18% Similarity=0.111 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEcC
Q 015684 80 AFINRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLG 132 (402)
Q Consensus 80 ~~l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~G 132 (402)
+.+.++.+..++..||+.+| -.+. .....+.+.+.+..+.+.+.|+++...
T Consensus 36 ~~l~~a~~d~~ik~vvL~~~-s~gg-~~~~~~el~~~i~~~~~~~kpVia~~~ 86 (222)
T cd07018 36 EALEKAAEDDRIKGIVLDLD-GLSG-GLAKLEELRQALERFRASGKPVIAYAD 86 (222)
T ss_pred HHHHHHhcCCCeEEEEEECC-CCCC-CHHHHHHHHHHHHHHHHhCCeEEEEeC
Confidence 44444444457889999999 3333 334445666777776667889876533
No 223
>PHA03008 hypothetical protein; Provisional
Probab=20.02 E-value=1.4e+02 Score=25.83 Aligned_cols=42 Identities=7% Similarity=0.017 Sum_probs=26.6
Q ss_pred CeEEEEecChhhhhcccCCCcccccCCcCCCCCCChHHHHHHHHcCCeeEEEeccCCC
Q 015684 244 PGLVYFHIPLPEFAYFDQSNFTGVRQEGISSASVNSGFFTTMVAAGDVKAVFTGHDHV 301 (402)
Q Consensus 244 ~~iv~~H~P~~~~~~~~~~~~~G~~~~~~~~~~~~~~~l~~l~~~~~v~~v~~GH~H~ 301 (402)
.-|+++|-|+....+ ..+.| ..+++.+. +-++++.++||.-+
T Consensus 162 tDILITHgPP~GhLD-----------~~vGC----~~Ll~~I~-rVKPKyHVFGh~~~ 203 (234)
T PHA03008 162 CDILITASPPFAILD-----------DDLAC----GDLFSKVI-KIKPKFHIFNGLTQ 203 (234)
T ss_pred CCEEEeCCCCccccc-----------cccCc----HHHHHHHH-HhCCcEEEeCCccc
Confidence 679999999966422 12222 24555554 33589999999543
No 224
>PRK03011 butyrate kinase; Provisional
Probab=20.02 E-value=3.2e+02 Score=26.24 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=26.8
Q ss_pred CCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCCCCC
Q 015684 90 KPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQ 136 (402)
Q Consensus 90 ~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GNHD~ 136 (402)
+||.||++|= +.. .....+.+.+.+.. -.|+.++||+.+.
T Consensus 295 dpD~IVlgGG-I~~--~~~l~~~I~~~l~~----~~pv~i~p~~~e~ 334 (358)
T PRK03011 295 KVDAIVLTGG-LAY--SKRLVERIKERVSF----IAPVIVYPGEDEM 334 (358)
T ss_pred CCCEEEEeCc-ccc--CHHHHHHHHHHHHh----hCCeEEEeCCCHH
Confidence 7999999998 553 22333334444442 2599999999875
No 225
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=20.01 E-value=3.9e+02 Score=23.90 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=28.8
Q ss_pred HHHHHHhcCCCEEEEcCCccCCCChhhHHHHHHHHHhHhHhCCCCEEEEcCCCCC
Q 015684 82 INRMISAEKPDLIVFTGDNIFGFDATDAAKSLNAAFAPAIASNIPWVAVLGNHDQ 136 (402)
Q Consensus 82 l~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~iP~~~v~GNHD~ 136 (402)
..+.+.+...|++++.|=. .+. ..+...+.++.. .++|++.-|||.+.
T Consensus 24 ~~~~~~~~gtDai~VGGS~--~~~---~~d~vv~~ik~~--~~lPvilfPg~~~~ 71 (230)
T PF01884_consen 24 ALEAACESGTDAIIVGGSD--TGV---TLDNVVALIKRV--TDLPVILFPGSPSQ 71 (230)
T ss_dssp HHHHHHCTT-SEEEEE-ST--HCH---HHHHHHHHHHHH--SSS-EEEETSTCCG
T ss_pred HHHHHHhcCCCEEEECCCC--Ccc---chHHHHHHHHhc--CCCCEEEeCCChhh
Confidence 3444466799999999983 111 222333444433 68999999999986
Done!