Query 015685
Match_columns 402
No_of_seqs 297 out of 982
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 08:37:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015685.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015685hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 100.0 9E-56 2E-60 428.2 24.4 268 85-393 47-341 (345)
2 PF00544 Pec_lyase_C: Pectate 100.0 9.6E-51 2.1E-55 379.6 12.6 189 121-319 1-200 (200)
3 smart00656 Amb_all Amb_all dom 100.0 6.4E-47 1.4E-51 351.3 20.8 169 137-322 10-189 (190)
4 TIGR03805 beta_helix_1 paralle 98.9 3E-07 6.5E-12 92.1 21.1 238 113-366 1-287 (314)
5 PF14592 Chondroitinas_B: Chon 98.3 7.7E-06 1.7E-10 84.8 13.2 180 112-298 6-234 (425)
6 PLN02218 polygalacturonase ADP 98.1 9.8E-05 2.1E-09 77.2 15.1 122 161-303 217-344 (431)
7 PF05048 NosD: Periplasmic cop 97.8 0.00076 1.7E-08 63.9 15.4 135 204-356 80-218 (236)
8 PF13229 Beta_helix: Right han 97.8 0.00018 3.9E-09 62.0 10.1 131 161-323 2-138 (158)
9 PLN02188 polygalacturonase/gly 97.8 0.00053 1.1E-08 71.3 15.1 99 159-276 178-277 (404)
10 PLN03003 Probable polygalactur 97.8 0.00057 1.2E-08 72.0 15.2 76 201-279 186-262 (456)
11 PLN02793 Probable polygalactur 97.8 0.00069 1.5E-08 71.2 15.8 98 160-276 201-299 (443)
12 PLN02155 polygalacturonase 97.8 0.00041 8.8E-09 71.9 13.8 99 159-276 168-267 (394)
13 PF00295 Glyco_hydro_28: Glyco 97.7 0.00044 9.6E-09 69.5 12.1 124 120-276 90-214 (326)
14 TIGR03805 beta_helix_1 paralle 97.7 0.0018 3.9E-08 65.1 16.1 153 142-304 62-247 (314)
15 TIGR03808 RR_plus_rpt_1 twin-a 97.6 0.0033 7.1E-08 65.9 17.1 115 112-246 56-176 (455)
16 PLN03010 polygalacturonase 97.6 0.0037 8.1E-08 65.1 17.5 98 201-302 205-308 (409)
17 PF12708 Pectate_lyase_3: Pect 97.3 0.007 1.5E-07 55.6 14.4 39 113-152 21-62 (225)
18 PLN02218 polygalacturonase ADP 97.3 0.012 2.7E-07 61.7 17.7 85 162-276 195-284 (431)
19 PF13229 Beta_helix: Right han 97.3 0.0028 6.1E-08 54.5 10.2 129 159-319 23-158 (158)
20 PF01696 Adeno_E1B_55K: Adenov 97.2 0.021 4.5E-07 59.0 17.8 175 113-324 57-242 (386)
21 PF05048 NosD: Periplasmic cop 97.0 0.015 3.2E-07 55.2 13.7 130 159-321 35-167 (236)
22 PLN03003 Probable polygalactur 96.9 0.017 3.7E-07 61.1 13.7 141 122-298 104-261 (456)
23 PLN02155 polygalacturonase 96.9 0.02 4.2E-07 59.6 13.8 139 123-298 107-268 (394)
24 PLN02197 pectinesterase 96.8 0.022 4.8E-07 61.9 14.0 137 65-230 244-410 (588)
25 PF07602 DUF1565: Protein of u 96.7 0.075 1.6E-06 52.0 15.9 190 112-320 17-240 (246)
26 PLN02480 Probable pectinestera 96.7 0.044 9.5E-07 56.0 14.5 118 112-247 62-197 (343)
27 PLN02793 Probable polygalactur 96.5 0.067 1.4E-06 56.5 14.8 109 138-276 144-269 (443)
28 PF00295 Glyco_hydro_28: Glyco 96.3 0.055 1.2E-06 54.5 12.4 108 139-276 62-184 (326)
29 PLN02188 polygalacturonase/gly 96.2 0.094 2E-06 54.7 14.1 166 123-325 114-313 (404)
30 PLN03010 polygalacturonase 96.2 0.065 1.4E-06 56.0 12.9 110 161-298 159-280 (409)
31 PLN02682 pectinesterase family 96.0 2.3 4.9E-05 44.2 23.4 105 112-230 84-214 (369)
32 smart00656 Amb_all Amb_all dom 95.6 0.34 7.4E-06 45.3 13.4 134 141-298 43-188 (190)
33 TIGR03808 RR_plus_rpt_1 twin-a 95.5 0.087 1.9E-06 55.5 9.9 162 144-321 121-332 (455)
34 COG5434 PGU1 Endopygalactoruna 95.3 0.2 4.4E-06 54.1 12.2 95 160-276 262-367 (542)
35 PLN02176 putative pectinestera 95.3 0.55 1.2E-05 48.1 14.7 119 112-247 53-188 (340)
36 COG3420 NosD Nitrous oxidase a 94.7 0.45 9.7E-06 48.7 12.0 93 139-247 100-192 (408)
37 PLN02170 probable pectinestera 94.6 0.52 1.1E-05 50.9 13.0 100 112-230 239-359 (529)
38 PLN02416 probable pectinestera 94.3 0.54 1.2E-05 51.0 12.5 112 112-246 244-376 (541)
39 PLN02432 putative pectinestera 94.2 0.8 1.7E-05 46.0 12.7 113 112-248 25-154 (293)
40 PLN02301 pectinesterase/pectin 94.0 0.76 1.6E-05 49.9 12.8 103 109-230 244-369 (548)
41 PLN02665 pectinesterase family 93.8 9.6 0.00021 39.6 19.8 104 112-230 82-205 (366)
42 PLN02773 pectinesterase 93.8 1.3 2.9E-05 44.9 13.4 113 112-247 19-162 (317)
43 PF00544 Pec_lyase_C: Pectate 93.8 0.65 1.4E-05 43.7 10.5 116 157-296 73-200 (200)
44 PLN02933 Probable pectinestera 93.6 1.2 2.6E-05 48.2 13.4 100 112-230 232-351 (530)
45 PLN02506 putative pectinestera 93.5 0.92 2E-05 49.2 12.4 113 112-246 246-378 (537)
46 PLN02314 pectinesterase 93.5 0.94 2E-05 49.6 12.5 100 112-230 292-411 (586)
47 PLN02745 Putative pectinestera 93.4 1.3 2.9E-05 48.5 13.5 100 112-230 299-418 (596)
48 PLN02304 probable pectinestera 93.3 1.8 4E-05 45.0 13.6 120 112-248 89-228 (379)
49 PLN02484 probable pectinestera 93.3 1.4 3E-05 48.3 13.4 101 112-230 286-406 (587)
50 PLN02916 pectinesterase family 93.2 1.5 3.1E-05 47.3 13.1 100 112-230 201-323 (502)
51 PLN02708 Probable pectinestera 93.0 1.3 2.9E-05 48.1 12.7 99 112-229 255-375 (553)
52 PLN02201 probable pectinestera 92.9 1.5 3.2E-05 47.4 12.7 100 112-230 220-339 (520)
53 PLN02634 probable pectinestera 92.7 2.4 5.1E-05 43.9 13.4 119 112-247 70-214 (359)
54 PLN03043 Probable pectinestera 92.7 1.8 4E-05 46.9 13.1 98 112-229 237-358 (538)
55 PLN02488 probable pectinestera 92.6 1.8 3.8E-05 46.6 12.7 100 112-230 211-330 (509)
56 PLN02995 Probable pectinestera 92.2 1.8 4E-05 46.9 12.5 113 112-246 237-371 (539)
57 PLN02217 probable pectinestera 92.0 1.9 4.1E-05 47.9 12.5 165 112-297 264-484 (670)
58 PLN02497 probable pectinestera 91.8 3.4 7.4E-05 42.3 13.2 120 112-247 46-182 (331)
59 PLN02313 Pectinesterase/pectin 91.6 2.2 4.7E-05 46.9 12.3 116 112-246 289-441 (587)
60 PLN02990 Probable pectinestera 91.5 3.1 6.8E-05 45.5 13.3 100 112-230 273-393 (572)
61 PLN02468 putative pectinestera 91.1 2.6 5.5E-05 46.1 12.1 100 112-230 272-391 (565)
62 PLN02713 Probable pectinestera 90.9 3.2 7E-05 45.3 12.7 100 112-230 264-386 (566)
63 COG3420 NosD Nitrous oxidase a 90.8 3.7 8.1E-05 42.2 12.1 41 137-179 45-88 (408)
64 PF01095 Pectinesterase: Pecti 90.7 2.4 5.3E-05 42.5 10.8 123 112-257 14-156 (298)
65 PLN02671 pectinesterase 89.5 9.4 0.0002 39.5 14.1 119 112-247 73-218 (359)
66 COG5434 PGU1 Endopygalactoruna 88.2 2 4.2E-05 46.7 8.5 133 120-275 236-395 (542)
67 PRK10531 acyl-CoA thioesterase 86.9 14 0.0003 39.1 13.6 104 112-230 96-256 (422)
68 PF04431 Pec_lyase_N: Pectate 86.5 0.44 9.6E-06 36.5 1.7 19 23-41 22-40 (56)
69 COG3866 PelB Pectate lyase [Ca 84.8 7.2 0.00016 39.6 9.7 119 202-322 115-251 (345)
70 PF14592 Chondroitinas_B: Chon 81.9 5.4 0.00012 42.1 8.0 113 202-325 183-325 (425)
71 PF08480 Disaggr_assoc: Disagg 73.1 46 0.001 31.6 10.6 86 236-323 2-110 (198)
72 TIGR03804 para_beta_helix para 68.5 8 0.00017 27.1 3.6 41 205-247 1-41 (44)
73 PF12708 Pectate_lyase_3: Pect 66.6 7.5 0.00016 35.5 4.0 40 210-250 183-222 (225)
74 PF03211 Pectate_lyase: Pectat 64.5 52 0.0011 31.8 9.3 52 200-252 93-145 (215)
75 PF01696 Adeno_E1B_55K: Adenov 57.3 2.3E+02 0.0049 29.9 13.1 97 162-276 139-238 (386)
76 PRK10123 wcaM putative colanic 40.5 54 0.0012 33.5 5.3 53 166-229 266-318 (464)
77 PF07602 DUF1565: Protein of u 39.8 1.1E+02 0.0024 30.1 7.3 91 141-253 95-193 (246)
78 PF08480 Disaggr_assoc: Disagg 38.3 3.7E+02 0.0079 25.8 11.7 72 211-283 33-113 (198)
79 PF12541 DUF3737: Protein of u 34.0 62 0.0014 32.4 4.5 15 165-179 16-30 (277)
80 PF10880 DUF2673: Protein of u 30.9 37 0.0008 26.2 1.9 23 13-35 11-33 (65)
81 TIGR03804 para_beta_helix para 29.1 1.3E+02 0.0028 20.8 4.4 42 161-224 1-42 (44)
82 PF07822 Toxin_13: Neurotoxin 27.7 9.7 0.00021 28.3 -1.6 22 58-79 20-42 (55)
83 PF07172 GRP: Glycine rich pro 22.8 48 0.001 27.9 1.4 9 23-31 20-28 (95)
84 PLN02698 Probable pectinestera 22.1 2.3E+02 0.005 30.7 6.7 48 166-230 268-316 (497)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9e-56 Score=428.18 Aligned_cols=268 Identities=31% Similarity=0.382 Sum_probs=218.1
Q ss_pred CCCCCCCCcEEEEcCCCCCCCCCCCchhHHHHhhcCCCeEEEEccceEEEeC------ceeeeccCeeEeccCCceEEeC
Q 015685 85 NAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLK------EELIMNSFKTIDGRGASVHIAG 158 (402)
Q Consensus 85 ~ttGG~gG~vy~VT~~~D~d~~~p~pGtLR~av~~~~P~~IvF~~~g~I~L~------~~L~v~snkTI~G~ga~~~I~~ 158 (402)
+||||.||++++|++.+| |..+++..+|.++|.-+.|+|++. .+|.+.|||||.|.|++++|.
T Consensus 47 GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~- 115 (345)
T COG3866 47 GTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLV- 115 (345)
T ss_pred CcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEE-
Confidence 799999999999999998 889999999995555667899987 567889999999999999999
Q ss_pred CceEEEeeeccEEEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEE-eCCccEEEEeeeeec--------CCCCee
Q 015685 159 GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSI-FGGTHIWVDHCSLSN--------CDDGLV 229 (402)
Q Consensus 159 G~gi~i~~a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi-~gs~nVWIDHcs~s~--------~~Dgli 229 (402)
|++|+|+.+.|||||||+|++...++ ...|+|+| .+++|||||||+|+. ..||++
T Consensus 116 g~gl~i~~a~NVIirNltf~~~~~~d----------------~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~ 179 (345)
T COG3866 116 GGGLKIRDAGNVIIRNLTFEGFYQGD----------------PNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLV 179 (345)
T ss_pred eceEEEEeCCcEEEEeeEEEeeccCC----------------CCCCcEEeccCCeEEEEEeeEeccccccccccCCCccE
Confidence 67999999999999999999875331 12699999 579999999999999 799999
Q ss_pred EeecCCeeEEEEcceecccCeeeeecCCCCc-cCCCcceEEEEeeeeCCCCCCCCCC--CcEEEEEcceecCCc--ceee
Q 015685 230 DAIHGSTAITISNNFMTHHDKVMLLGHSDTY-TQDKNMQVTIAFNHFGEGLVQRIPR--HGYFHVVNNDYTHWE--MYAI 304 (402)
Q Consensus 230 Dv~~gs~~VTISnn~f~~H~k~~LiG~sd~~-~~d~~~~vTi~~N~f~~~~~~R~Pr--~G~~Hv~NN~y~~w~--~yai 304 (402)
|+++++++||||||+|++|+|.+|+|.+|+. .+|++.+||+||||| +++.||+|| ||++||+||||.... .||+
T Consensus 180 Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~ 258 (345)
T COG3866 180 DIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAI 258 (345)
T ss_pred EeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeEEEEeccccccCcccceEE
Confidence 9999999999999999999999999999985 456889999999999 799999999 999999999999665 4555
Q ss_pred ccCCCceeeeecceEeCCCCCcccccccccCCCCcccCCCeeeecCceEEeCceEecCCCCC------CCCCCCCCceee
Q 015685 305 GGSANPTINSQGNRFAAPDRAFSKEVTKHEDAPESEWRNWNWRSEGDLMVNGAFFTASGAGA------SSSYARASSLGA 378 (402)
Q Consensus 305 gg~~~~~i~~egN~F~~~~~~~~k~vt~r~~~~~~~~~~~~w~s~gd~~~nG~~f~~sG~~~------~~~~~~~~~~~~ 378 (402)
+-...++|++|+|||+....+..---|++. +.+|.- -+|++|..++... ...++..|+|++
T Consensus 259 ~iG~~AkiyvE~NyF~~~~~~~~f~dt~~~--------~GY~~~-----d~gsy~~~s~~~~~~~~G~~w~ps~~Y~Ytv 325 (345)
T COG3866 259 TIGTSAKIYVENNYFENGSEGLGFLDTKGT--------SGYANQ-----DSGSYLNSSKSMSVRAGGVTWNPSSYYSYTV 325 (345)
T ss_pred eeccceEEEEecceeccCCCCceeeecCCc--------cceEEe-----ccCceecccCCcccccCCccCCCCCCccccc
Confidence 544459999999999997443211112211 012221 3355665555432 235677899999
Q ss_pred CCCC-chhchhcccCC
Q 015685 379 RPSA-LVGPITGSAGA 393 (402)
Q Consensus 379 ~~~~-~v~~~t~~AG~ 393 (402)
+|.+ +++.||.+||+
T Consensus 326 d~~~dVks~Vt~yAGa 341 (345)
T COG3866 326 DPPEDVKSFVTNYAGA 341 (345)
T ss_pred CChHHhhhhhhccccc
Confidence 9765 56889999995
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=9.6e-51 Score=379.58 Aligned_cols=189 Identities=41% Similarity=0.643 Sum_probs=158.3
Q ss_pred CCeEEEEccceEEEeCceeeeccCeeEeccCCceEEeCCceEEEe-eeccEEEEeeEEeecccCCCcccccCCCCCCCcc
Q 015685 121 EPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQ-YVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRT 199 (402)
Q Consensus 121 ~P~~IvF~~~g~I~L~~~L~v~snkTI~G~ga~~~I~~G~gi~i~-~a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~ 199 (402)
+|+ ||+++|+|+++.+|.+.|||||+|+|++++|. |.|+.+. +++|||||||+|+++. ++..+...+...
T Consensus 1 ~~~--ii~~~g~i~~~~~i~v~snkTi~G~g~~~~i~-~~G~~i~~~~~NVIirNl~~~~~~------~~~~~~~~~~~~ 71 (200)
T PF00544_consen 1 EPL--IIKVSGTIDLKSPISVGSNKTIIGIGAGATII-GGGLRIIKGASNVIIRNLRFRNVP------VDPGPDWSGDGD 71 (200)
T ss_dssp S-E--EEEEHHCCHHHCEEEEESSEEEEEETTTTEEE-SSEEEEEESCEEEEEES-EEECEE------EECSTEEETTEE
T ss_pred CcE--EEEEEeEEccCCeEEECCCcEEEEccCCeEEE-CceEEEecCCCeEEEECCEEEecc------ccCCcccCCCcc
Confidence 465 45668899999999999999999999999999 6788886 9999999999999841 111122222223
Q ss_pred ccCCCeEEEeCCccEEEEeeeeecC--------CCCeeEeecCCeeEEEEcceecccCeeeeecCCCCccCCCcceEEEE
Q 015685 200 VSDGDGVSIFGGTHIWVDHCSLSNC--------DDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIA 271 (402)
Q Consensus 200 ~~d~DaIsi~gs~nVWIDHcs~s~~--------~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTi~ 271 (402)
..++|+|+|++++|||||||+|+|+ .||++|+++++++||||||+|.+|+|+||+|++|+...|..+++|||
T Consensus 72 ~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~h 151 (200)
T PF00544_consen 72 SSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFH 151 (200)
T ss_dssp ECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEE
T ss_pred ccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEE
Confidence 4689999999999999999999999 99999999999999999999999999999999988877777999999
Q ss_pred eeeeCCCCCCCCCC--CcEEEEEcceecCCcceeeccCCCceeeeecceE
Q 015685 272 FNHFGEGLVQRIPR--HGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRF 319 (402)
Q Consensus 272 ~N~f~~~~~~R~Pr--~G~~Hv~NN~y~~w~~yaigg~~~~~i~~egN~F 319 (402)
|||| .++.+|+|| +|++|+|||||+++..|+++.++++++++|+|||
T Consensus 152 hN~f-~~~~~R~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 152 HNYF-ANTNSRNPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp S-EE-EEEEE-TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred eEEE-CchhhCCCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 9999 689999999 8999999999999999999999999999999999
No 3
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=6.4e-47 Score=351.33 Aligned_cols=169 Identities=57% Similarity=0.889 Sum_probs=156.7
Q ss_pred ceeeeccCeeEeccCCceEEeCCceEEEeeeccEEEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEeCCccEEE
Q 015685 137 EELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWV 216 (402)
Q Consensus 137 ~~L~v~snkTI~G~ga~~~I~~G~gi~i~~a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~gs~nVWI 216 (402)
.+|.|.|||||+|+|+++.|. |.+|+++.++|||||||+|+++.+. + ..++|+|++++++||||
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~-g~gl~i~~~~NVIirnl~i~~~~~~-----------~----~~~~D~i~~~~~~~VwI 73 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIK-GGGLTIKSVSNVIIRNLTIHDPKPV-----------Y----GSDGDAISIDGSSNVWI 73 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEE-eeEEEEEecceEEEeCCEEECCccC-----------C----CCCCCEEEEeCCCeEEE
Confidence 578899999999999999998 7899999999999999999986543 1 14789999999999999
Q ss_pred EeeeeecC---------CCCeeEeecCCeeEEEEcceecccCeeeeecCCCCccCCCcceEEEEeeeeCCCCCCCCCC--
Q 015685 217 DHCSLSNC---------DDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPR-- 285 (402)
Q Consensus 217 DHcs~s~~---------~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~Pr-- 285 (402)
|||+|+|. .|+++|+++++++||||||+|.+|+|++|+|++|+...+..++||+|||||. ++.+|+||
T Consensus 74 DHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~-~~~~R~P~~r 152 (190)
T smart00656 74 DHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPRVR 152 (190)
T ss_pred EccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEc-CcccCCCccc
Confidence 99999998 8999999999999999999999999999999999887667899999999995 79999999
Q ss_pred CcEEEEEcceecCCcceeeccCCCceeeeecceEeCC
Q 015685 286 HGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAP 322 (402)
Q Consensus 286 ~G~~Hv~NN~y~~w~~yaigg~~~~~i~~egN~F~~~ 322 (402)
+|++|++||||++|..|+++.++++++++|+|||+..
T Consensus 153 ~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 153 FGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred CCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 8999999999999999999999999999999999875
No 4
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.87 E-value=3e-07 Score=92.05 Aligned_cols=238 Identities=16% Similarity=0.228 Sum_probs=132.9
Q ss_pred HHHHhhcCCCe-EEEEccceEEEeCceeeec-cCeeEeccCCc-eEEeC------CceEEEeeeccEEEEeeEEeecccC
Q 015685 113 LRYAVIQDEPL-WIIFARDMTIRLKEELIMN-SFKTIDGRGAS-VHIAG------GPCITIQYVTNIIIHGLNIHDCKKG 183 (402)
Q Consensus 113 LR~av~~~~P~-~IvF~~~g~I~L~~~L~v~-snkTI~G~ga~-~~I~~------G~gi~i~~a~NVIIrnL~i~~~~~~ 183 (402)
|++|+.+-+|- +|++. .|+-++++.|.+. +++||.|.+.. ..|.. +-+|.+ .++||.|++|+|++...
T Consensus 1 iQ~Ai~~A~~GDtI~l~-~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v-~a~~VtI~~ltI~~~~~- 77 (314)
T TIGR03805 1 LQEALIAAQPGDTIVLP-EGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLV-TSDDVTLSDLAVENTKG- 77 (314)
T ss_pred CHhHHhhCCCCCEEEEC-CCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEE-EeCCeEEEeeEEEcCCC-
Confidence 45677766665 55555 5788877888886 89999998763 33321 334443 57888888888876321
Q ss_pred CCcccccCCC------CCCCc----cccCCCeEEEeCCccEEEEeeeeecCCCCeeEeecCCeeEEEEcceecccCeeee
Q 015685 184 GNAMVRDSPR------HFGWR----TVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVML 253 (402)
Q Consensus 184 ~~~~ir~s~~------~~g~~----~~~d~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~L 253 (402)
++-.++.+.. ...|. .....+||.+..++++-|.+|.++...|--|- ...+++++|++|.+.+-..+..
T Consensus 78 ~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIy-v~~s~~~~v~nN~~~~n~~GI~ 156 (314)
T TIGR03805 78 DGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIY-VGQSQNIVVRNNVAEENVAGIE 156 (314)
T ss_pred CeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEE-ECCCCCeEEECCEEccCcceEE
Confidence 1001111100 00000 01346788888899999999999888774333 3467889999998876555555
Q ss_pred ecCCCCccCCCcceEEEEeeeeCCCCCC-------CCCC--CcEEEEEcceecCCc----------------ceeeccCC
Q 015685 254 LGHSDTYTQDKNMQVTIAFNHFGEGLVQ-------RIPR--HGYFHVVNNDYTHWE----------------MYAIGGSA 308 (402)
Q Consensus 254 iG~sd~~~~d~~~~vTi~~N~f~~~~~~-------R~Pr--~G~~Hv~NN~y~~w~----------------~yaigg~~ 308 (402)
+-.|. .+.+.+|.+..+... -.|. -..+.|.||.+.+-. ..+|-...
T Consensus 157 i~~S~--------~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~~ 228 (314)
T TIGR03805 157 IENSQ--------NADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVMA 228 (314)
T ss_pred EEecC--------CcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEEEc
Confidence 44432 456666666322110 0111 225667777764321 01111122
Q ss_pred CceeeeecceEeCCCCCccccccccc-C----CCCcccCCCeeeecCceEEeCceEecCCCCC
Q 015685 309 NPTINSQGNRFAAPDRAFSKEVTKHE-D----APESEWRNWNWRSEGDLMVNGAFFTASGAGA 366 (402)
Q Consensus 309 ~~~i~~egN~F~~~~~~~~k~vt~r~-~----~~~~~~~~~~w~s~gd~~~nG~~f~~sG~~~ 366 (402)
...+.+++|.|..-.....--+.... + ..+..|..+ ..++.+-.|.|...|..+
T Consensus 229 ~~~v~I~~N~i~~n~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~v~i~~N~~~~~g~~p 287 (314)
T TIGR03805 229 NRDVEIFGNVISNNDTANVLISSYHSTGLPDQPPDDGFDPY----PRNISIHDNTFSDGGTNP 287 (314)
T ss_pred ccceEEECCEEeCCcceeEEEEecccccCCCCCcCCCccCC----CcceEEEccEeecCCCCC
Confidence 35678889998876543211111110 0 112223332 267778888998888754
No 5
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.31 E-value=7.7e-06 Score=84.81 Aligned_cols=180 Identities=19% Similarity=0.239 Sum_probs=81.3
Q ss_pred hHHHHhhcCCCe-EEEEccceEEEeCceeee------ccCeeEeccC-CceEEeCCceEEEeeeccEEEEeeEEeecccC
Q 015685 112 TLRYAVIQDEPL-WIIFARDMTIRLKEELIM------NSFKTIDGRG-ASVHIAGGPCITIQYVTNIIIHGLNIHDCKKG 183 (402)
Q Consensus 112 tLR~av~~~~P~-~IvF~~~g~I~L~~~L~v------~snkTI~G~g-a~~~I~~G~gi~i~~a~NVIIrnL~i~~~~~~ 183 (402)
+|+.||.+-.|= +|+++ +|+-+ ..+|.+ ...+||..+. ..|.|.|..+|++. ++.++|.+|.|++..+.
T Consensus 6 ~lq~Ai~~a~pGD~I~L~-~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i~-G~yl~v~GL~F~ng~~~ 82 (425)
T PF14592_consen 6 ELQSAIDNAKPGDTIVLA-DGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRIS-GSYLVVSGLKFKNGYTP 82 (425)
T ss_dssp HHHHHHHH--TT-EEEE--SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES-EEEEE---
T ss_pred HHHHHHHhCCCCCEEEEC-Cceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEEE-eeeEEEeCeEEecCCCC
Confidence 489999864443 33333 45655 234443 4568888874 36778866677776 69999999999986543
Q ss_pred CCcccccCCCC---CCCc---c----------ccCCCeEEE----eCCccEEEEeeeeecC-CCCe-eEee-------cC
Q 015685 184 GNAMVRDSPRH---FGWR---T----------VSDGDGVSI----FGGTHIWVDHCSLSNC-DDGL-VDAI-------HG 234 (402)
Q Consensus 184 ~~~~ir~s~~~---~g~~---~----------~~d~DaIsi----~gs~nVWIDHcs~s~~-~Dgl-iDv~-------~g 234 (402)
....|...... +... + ..+.+..++ -.++|--||||+|..- ..|. +-+. .-
T Consensus 83 ~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~~ 162 (425)
T PF14592_consen 83 TGAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQSI 162 (425)
T ss_dssp TTT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE--S--SS---
T ss_pred CCceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEEecccCcccc
Confidence 32222221110 0000 0 011223344 2356677899999973 2232 2222 12
Q ss_pred CeeEEEEcceec-------ccCeeeeecCCCCccCCCcceEEEEeeeeCCCCCCCCCC-----CcEEEEEcceecC
Q 015685 235 STAITISNNFMT-------HHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPR-----HGYFHVVNNDYTH 298 (402)
Q Consensus 235 s~~VTISnn~f~-------~H~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~Pr-----~G~~Hv~NN~y~~ 298 (402)
..+-+|.+|+|. +...++.||.|.....+ -+.++.+|+| ++|.+= ++ -+.--+.||.|++
T Consensus 163 ~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~--s~t~Ve~NlF-e~cdGE-~EIISvKS~~N~ir~Ntf~e 234 (425)
T PF14592_consen 163 ANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSD--SNTTVENNLF-ERCDGE-VEIISVKSSDNTIRNNTFRE 234 (425)
T ss_dssp ----EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EE-EEE-SS-SEEEEEESBT-EEES-EEES
T ss_pred ccCceEEeccccccCCCCCCCceeEEEecccccccc--cceeeecchh-hhcCCc-eeEEEeecCCceEeccEEEe
Confidence 346799999998 35578888987654333 2789999999 666644 22 3444566666654
No 6
>PLN02218 polygalacturonase ADPG
Probab=98.05 E-value=9.8e-05 Score=77.23 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=83.2
Q ss_pred eEEEeeeccEEEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEeCCccEEEEeeeeecCCCCeeEeecCCeeEEE
Q 015685 161 CITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITI 240 (402)
Q Consensus 161 gi~i~~a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTI 240 (402)
.+.+..++||.|+||+|.. |.. ....|||-+..++||.|.+|.++.+ |.+|.++.++++|+|
T Consensus 217 ~i~~~~~~nV~i~~v~I~a--~~~---------------spNTDGIdi~ss~nV~I~n~~I~tG-DDcIaIksgs~nI~I 278 (431)
T PLN02218 217 QISIEKCSNVQVSNVVVTA--PAD---------------SPNTDGIHITNTQNIRVSNSIIGTG-DDCISIESGSQNVQI 278 (431)
T ss_pred EEEEEceeeEEEEEEEEeC--CCC---------------CCCCCcEeecccceEEEEccEEecC-CceEEecCCCceEEE
Confidence 3445577888888888864 210 1367999999999999999999987 668899999999999
Q ss_pred EcceecccCeeeeecCCCCc-cCCCcceEEEEeeeeCCCCCCCCCC-----CcEEEEEcceecCCccee
Q 015685 241 SNNFMTHHDKVMLLGHSDTY-TQDKNMQVTIAFNHFGEGLVQRIPR-----HGYFHVVNNDYTHWEMYA 303 (402)
Q Consensus 241 Snn~f~~H~k~~LiG~sd~~-~~d~~~~vTi~~N~f~~~~~~R~Pr-----~G~~Hv~NN~y~~w~~ya 303 (402)
++|.+.. ..+.-||+--.+ ..+....|++.++.| .++. +.=| .|.-.+-|=.|.+..|..
T Consensus 279 ~n~~c~~-GHGisIGS~g~~~~~~~V~nV~v~n~~~-~~t~-nGvRIKT~~Gg~G~v~nI~f~ni~m~~ 344 (431)
T PLN02218 279 NDITCGP-GHGISIGSLGDDNSKAFVSGVTVDGAKL-SGTD-NGVRIKTYQGGSGTASNIIFQNIQMEN 344 (431)
T ss_pred EeEEEEC-CCCEEECcCCCCCCCceEEEEEEEccEE-ecCC-cceEEeecCCCCeEEEEEEEEeEEEEc
Confidence 9999953 345667863222 223456899999888 3432 3333 233345555555555543
No 7
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.81 E-value=0.00076 Score=63.91 Aligned_cols=135 Identities=20% Similarity=0.288 Sum_probs=75.3
Q ss_pred CeEEEeCCccEEEEeeeeecCCCCeeEeecCCeeEEEEcceecccCeeeeecCCCCccCCCcceEEEEeeeeCCCCC-C-
Q 015685 204 DGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLV-Q- 281 (402)
Q Consensus 204 DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~-~- 281 (402)
+||.+..+.+..|..+.|+...+|.. ..++...+|++|.|.+...++.+-.+. +.++.+|.|..+.. .
T Consensus 80 ~Gi~l~~s~~~~I~~N~i~~n~~GI~--l~~s~~~~I~~N~i~~~~~GI~l~~s~--------~n~I~~N~i~~n~~~Gi 149 (236)
T PF05048_consen 80 YGIYLMGSSNNTISNNTISNNGYGIY--LYGSSNNTISNNTISNNGYGIYLSSSS--------NNTITGNTISNNTDYGI 149 (236)
T ss_pred CCEEEEcCCCcEEECCEecCCCceEE--EeeCCceEEECcEEeCCCEEEEEEeCC--------CCEEECeEEeCCCccce
Confidence 77888887777888888888877654 456777888888888766666665442 56777777743201 0
Q ss_pred C-CCCCcEEEEEcceecCCcceeeccCCCceeeeecceEeCCCCCcccccccccCCCCcccCCCe-eeecCceEEeC
Q 015685 282 R-IPRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDRAFSKEVTKHEDAPESEWRNWN-WRSEGDLMVNG 356 (402)
Q Consensus 282 R-~Pr~G~~Hv~NN~y~~w~~yaigg~~~~~i~~egN~F~~~~~~~~k~vt~r~~~~~~~~~~~~-w~s~gd~~~nG 356 (402)
+ ...-....+++|.|.+-..-...++. .|+|-.+.. ....+.+..+....+|..+. .+.++|.+.+-
T Consensus 150 ~~~~~s~~n~I~~N~f~N~~~~~~~~~~-------~n~wn~~~~-~~~~~~g~~~~~GNyw~~~~g~D~~~dGi~d~ 218 (236)
T PF05048_consen 150 YFLSGSSGNTIYNNNFNNSINVIIDGSS-------NNTWNSPKT-SGYNINGGPYTGGNYWSDYDGNDADGDGIGDT 218 (236)
T ss_pred EEeccCCCCEEECCCccCEeccEEcCcc-------eeEEecCCc-eeeEEcCCccCcccccCCCCCccCCCCCeEEe
Confidence 1 01123456777777332221111111 555544432 11222222333345566553 55666665553
No 8
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.80 E-value=0.00018 Score=61.98 Aligned_cols=131 Identities=22% Similarity=0.330 Sum_probs=79.0
Q ss_pred eEEEeeeccEEEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEeCCccEEEEeeeeecCCCCeeEeecCCeeEEE
Q 015685 161 CITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITI 240 (402)
Q Consensus 161 gi~i~~a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTI 240 (402)
||.+....++.|++.+|+++ ..+||.+.+...+.|+.|+|.+...|+. ..+..+++|
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~---------------------~~~gi~~~~~~~~~i~n~~i~~~~~gi~--~~~~~~~~i 58 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNN---------------------GGDGIHVSGSSNITIENCTISNGGYGIY--VSGGSNVTI 58 (158)
T ss_dssp CEEETTCEC-EEESEEEESS---------------------SSECEEE-SSCESEEES-EEESSTTSEE--EECCES-EE
T ss_pred EEEEECCcCeEEeeeEEEeC---------------------CCeEEEEEcCCCeEEECeEEECCCcEEE--EecCCCeEE
Confidence 57788888999999999863 4688999998889999999999555554 345589999
Q ss_pred EcceecccCeeeeecCCCCccCCCcceEEEEeeeeCCCCCCCCCC----CcEEEEEcceecCCcceeecc--CCCceeee
Q 015685 241 SNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPR----HGYFHVVNNDYTHWEMYAIGG--SANPTINS 314 (402)
Q Consensus 241 Snn~f~~H~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~Pr----~G~~Hv~NN~y~~w~~yaigg--~~~~~i~~ 314 (402)
++|.|.+......+-.+. .+++.+|.|. ++..-.=. ...+.+.||.+.+-..+++.. ...+++.+
T Consensus 59 ~~~~~~~~~~~i~~~~~~--------~~~i~~~~i~-~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i 129 (158)
T PF13229_consen 59 SNNTISDNGSGIYVSGSS--------NITIENNRIE-NNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTI 129 (158)
T ss_dssp ES-EEES-SEEEECCS-C--------S-EEES-EEE-CSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EE
T ss_pred ECeEEEEccceEEEEecC--------CceecCcEEE-cCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEE
Confidence 999999877433333222 5788888884 33221100 124678888887655433322 22457888
Q ss_pred ecceEeCCC
Q 015685 315 QGNRFAAPD 323 (402)
Q Consensus 315 egN~F~~~~ 323 (402)
++|.|....
T Consensus 130 ~~n~i~~~~ 138 (158)
T PF13229_consen 130 ENNTISNNG 138 (158)
T ss_dssp ECEEEECES
T ss_pred EEEEEEeCc
Confidence 888887654
No 9
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=97.79 E-value=0.00053 Score=71.27 Aligned_cols=99 Identities=15% Similarity=0.185 Sum_probs=75.2
Q ss_pred CceEEEeeeccEEEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEeCCccEEEEeeeeecCCCCeeEeecCCeeE
Q 015685 159 GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAI 238 (402)
Q Consensus 159 G~gi~i~~a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~V 238 (402)
-..|.+..++||.|++|+|.. |.. ....|||-+..++||+|.+|.+....| +|.++.++++|
T Consensus 178 ~w~i~~~~~~~v~i~~v~I~~--~~~---------------spNtDGidi~~s~nV~I~n~~I~~GDD-cIaiksg~~nI 239 (404)
T PLN02188 178 FFHIALVECRNFKGSGLKISA--PSD---------------SPNTDGIHIERSSGVYISDSRIGTGDD-CISIGQGNSQV 239 (404)
T ss_pred CeEEEEEccccEEEEEEEEeC--CCC---------------CCCCCcEeeeCcccEEEEeeEEeCCCc-EEEEccCCccE
Confidence 456677789999999999974 210 136799999999999999999998866 88888899999
Q ss_pred EEEcceecccCeeeeecCCCC-ccCCCcceEEEEeeeeC
Q 015685 239 TISNNFMTHHDKVMLLGHSDT-YTQDKNMQVTIAFNHFG 276 (402)
Q Consensus 239 TISnn~f~~H~k~~LiG~sd~-~~~d~~~~vTi~~N~f~ 276 (402)
+|+++.+.. ..++-||+--. ........|++.++.|.
T Consensus 240 ~I~n~~c~~-ghGisiGSlG~~~~~~~V~nV~v~n~~~~ 277 (404)
T PLN02188 240 TITRIRCGP-GHGISVGSLGRYPNEGDVTGLVVRDCTFT 277 (404)
T ss_pred EEEEEEEcC-CCcEEeCCCCCCCcCCcEEEEEEEeeEEE
Confidence 999998853 34566776221 11233568999999984
No 10
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.78 E-value=0.00057 Score=71.99 Aligned_cols=76 Identities=16% Similarity=0.259 Sum_probs=58.9
Q ss_pred cCCCeEEEeCCccEEEEeeeeecCCCCeeEeecCCeeEEEEcceecccCeeeeecCCCCcc-CCCcceEEEEeeeeCCCC
Q 015685 201 SDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYT-QDKNMQVTIAFNHFGEGL 279 (402)
Q Consensus 201 ~d~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~-~d~~~~vTi~~N~f~~~~ 279 (402)
...|||-+..++||+|.+|.++.+ |.+|.++.++++|+|+++.+.. ..+.-||+--++. .+....|++.++.| .++
T Consensus 186 pNTDGIDi~~S~nV~I~n~~I~tG-DDCIaiksgs~NI~I~n~~c~~-GHGISIGSlg~~g~~~~V~NV~v~n~~~-~~T 262 (456)
T PLN03003 186 PNTDGIDVGASSNVVIQDCIIATG-DDCIAINSGTSNIHISGIDCGP-GHGISIGSLGKDGETATVENVCVQNCNF-RGT 262 (456)
T ss_pred CCCCcEeecCcceEEEEecEEecC-CCeEEeCCCCccEEEEeeEEEC-CCCeEEeeccCCCCcceEEEEEEEeeEE-ECC
Confidence 367999999999999999999876 5588889999999999999864 3356677633221 23456899999998 344
No 11
>PLN02793 Probable polygalacturonase
Probab=97.78 E-value=0.00069 Score=71.19 Aligned_cols=98 Identities=14% Similarity=0.192 Sum_probs=72.2
Q ss_pred ceEEEeeeccEEEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEeCCccEEEEeeeeecCCCCeeEeecCCeeEE
Q 015685 160 PCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAIT 239 (402)
Q Consensus 160 ~gi~i~~a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VT 239 (402)
..|.+..++||.|++|+|... .. ....|||.+..++||+|.+|.+... |.+|.++.++++|+
T Consensus 201 ~~i~~~~~~nv~i~~l~I~~p--~~---------------spNTDGIdi~~s~nV~I~n~~I~~g-DDcIaik~~s~nI~ 262 (443)
T PLN02793 201 MHIAFTNCRRVTISGLKVIAP--AT---------------SPNTDGIHISASRGVVIKDSIVRTG-DDCISIVGNSSRIK 262 (443)
T ss_pred eEEEEEccCcEEEEEEEEECC--CC---------------CCCCCcEeeeccceEEEEeCEEeCC-CCeEEecCCcCCEE
Confidence 445566788999999988742 10 1367999999999999999998865 66888888999999
Q ss_pred EEcceecccCeeeeecCCC-CccCCCcceEEEEeeeeC
Q 015685 240 ISNNFMTHHDKVMLLGHSD-TYTQDKNMQVTIAFNHFG 276 (402)
Q Consensus 240 ISnn~f~~H~k~~LiG~sd-~~~~d~~~~vTi~~N~f~ 276 (402)
|+|+.+.. ..+.-||+-- +........|++.++.|.
T Consensus 263 I~n~~c~~-GhGisIGSlg~~~~~~~V~nV~v~n~~~~ 299 (443)
T PLN02793 263 IRNIACGP-GHGISIGSLGKSNSWSEVRDITVDGAFLS 299 (443)
T ss_pred EEEeEEeC-CccEEEecccCcCCCCcEEEEEEEccEEe
Confidence 99999853 2345677631 112233567999999883
No 12
>PLN02155 polygalacturonase
Probab=97.77 E-value=0.00041 Score=71.89 Aligned_cols=99 Identities=17% Similarity=0.206 Sum_probs=76.4
Q ss_pred CceEEEeeeccEEEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEeCCccEEEEeeeeecCCCCeeEeecCCeeE
Q 015685 159 GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAI 238 (402)
Q Consensus 159 G~gi~i~~a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~V 238 (402)
-..+.+..++||.|+||+|.. |.. ....|||-+..++||+|.+|.+..+-| .|.++.++++|
T Consensus 168 ~w~i~~~~~~nv~i~~v~I~~--p~~---------------~~NtDGidi~~s~nV~I~~~~I~~gDD-cIaik~gs~nI 229 (394)
T PLN02155 168 VSHMTLNGCTNVVVRNVKLVA--PGN---------------SPNTDGFHVQFSTGVTFTGSTVQTGDD-CVAIGPGTRNF 229 (394)
T ss_pred CeEEEEECeeeEEEEEEEEEC--CCC---------------CCCCCccccccceeEEEEeeEEecCCc-eEEcCCCCceE
Confidence 456777889999999999975 221 136799999999999999999998866 77888899999
Q ss_pred EEEcceecccCeeeeecCCCCc-cCCCcceEEEEeeeeC
Q 015685 239 TISNNFMTHHDKVMLLGHSDTY-TQDKNMQVTIAFNHFG 276 (402)
Q Consensus 239 TISnn~f~~H~k~~LiG~sd~~-~~d~~~~vTi~~N~f~ 276 (402)
+|++|.+.. ..++-||+--.+ +.....+|++.++.|.
T Consensus 230 ~I~n~~c~~-GhGisIGS~g~~~~~~~V~nV~v~n~~~~ 267 (394)
T PLN02155 230 LITKLACGP-GHGVSIGSLAKELNEDGVENVTVSSSVFT 267 (394)
T ss_pred EEEEEEEEC-CceEEeccccccCCCCcEEEEEEEeeEEe
Confidence 999998874 335678874222 2334568999999993
No 13
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.67 E-value=0.00044 Score=69.52 Aligned_cols=124 Identities=19% Similarity=0.233 Sum_probs=84.5
Q ss_pred CCCeEEEEccceEEEeCceeeeccCeeEeccCCceEEeCCceEEEeeeccEEEEeeEEeecccCCCcccccCCCCCCCcc
Q 015685 120 DEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRT 199 (402)
Q Consensus 120 ~~P~~IvF~~~g~I~L~~~L~v~snkTI~G~ga~~~I~~G~gi~i~~a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~ 199 (402)
..|+.+.|...-.+.++ ++||.- +| ...+.+..++||.|++|+|+....
T Consensus 90 ~rp~~i~~~~~~~~~i~-------~i~~~n--sp-----~w~~~~~~~~nv~i~~i~I~~~~~----------------- 138 (326)
T PF00295_consen 90 RRPRLIRFNNCKNVTIE-------GITIRN--SP-----FWHIHINDCDNVTISNITINNPAN----------------- 138 (326)
T ss_dssp SSSESEEEEEEEEEEEE-------SEEEES---S-----SESEEEESEEEEEEESEEEEEGGG-----------------
T ss_pred cccceeeeeeecceEEE-------eeEecC--CC-----eeEEEEEccCCeEEcceEEEecCC-----------------
Confidence 56888888753222222 333332 22 567888899999999999986321
Q ss_pred ccCCCeEEEeCCccEEEEeeeeecCCCCeeEeecCCeeEEEEcceecccCeeeeecCCCCcc-CCCcceEEEEeeeeC
Q 015685 200 VSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYT-QDKNMQVTIAFNHFG 276 (402)
Q Consensus 200 ~~d~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~-~d~~~~vTi~~N~f~ 276 (402)
....|||-+.+++||.|++|.+... |..|.++.++.+|+|+||.|.. ..++-+|+--... ......|+|.++.|-
T Consensus 139 ~~NtDGid~~~s~nv~I~n~~i~~g-DD~Iaiks~~~ni~v~n~~~~~-ghGisiGS~~~~~~~~~i~nV~~~n~~i~ 214 (326)
T PF00295_consen 139 SPNTDGIDIDSSKNVTIENCFIDNG-DDCIAIKSGSGNILVENCTCSG-GHGISIGSEGSGGSQNDIRNVTFENCTII 214 (326)
T ss_dssp CTS--SEEEESEEEEEEESEEEESS-SESEEESSEECEEEEESEEEES-SSEEEEEEESSSSE--EEEEEEEEEEEEE
T ss_pred CCCcceEEEEeeeEEEEEEeecccc-cCcccccccccceEEEeEEEec-cccceeeeccCCccccEEEeEEEEEEEee
Confidence 1367999999999999999999877 6677778777899999999974 3346667522211 112347888888883
No 14
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=97.66 E-value=0.0018 Score=65.08 Aligned_cols=153 Identities=17% Similarity=0.150 Sum_probs=94.8
Q ss_pred ccCeeEeccCCceEEeCCceEEEeeeccEEEEeeEEeecc--------------cCCCcccccCCCCCCCccccCCCeEE
Q 015685 142 NSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCK--------------KGGNAMVRDSPRHFGWRTVSDGDGVS 207 (402)
Q Consensus 142 ~snkTI~G~ga~~~I~~G~gi~i~~a~NVIIrnL~i~~~~--------------~~~~~~ir~s~~~~g~~~~~d~DaIs 207 (402)
.+++||.|.+-.- .++.+|.++.++|++||++++.... ...+..|++..- ....++||.
T Consensus 62 a~~VtI~~ltI~~--~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i-----~g~~d~GIy 134 (314)
T TIGR03805 62 SDDVTLSDLAVEN--TKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYV-----RGASDAGIY 134 (314)
T ss_pred eCCeEEEeeEEEc--CCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEE-----ECCCcccEE
Confidence 5666666653110 1256788888888888888886210 011111211100 012345899
Q ss_pred EeCCccEEEEeeeeecCCCCeeEeecCCeeEEEEcceecccCeeeeecCCCCccCCCcceEEEEeeeeCCCCCCC-----
Q 015685 208 IFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQR----- 282 (402)
Q Consensus 208 i~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R----- 282 (402)
+..++++.|-+|.+.....|+. ...|.++.|.+|.+.+-.-+.++-..+....-...++++++|.|.. ....
T Consensus 135 v~~s~~~~v~nN~~~~n~~GI~--i~~S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~-n~~~n~~~~ 211 (314)
T TIGR03805 135 VGQSQNIVVRNNVAEENVAGIE--IENSQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFD-NNTPNFAPA 211 (314)
T ss_pred ECCCCCeEEECCEEccCcceEE--EEecCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEEC-CCCCCCccc
Confidence 9999999999999999888776 3468899999999998666666632221111112389999999953 3222
Q ss_pred ------CCC-Cc-------EEEEEcceecCCcceee
Q 015685 283 ------IPR-HG-------YFHVVNNDYTHWEMYAI 304 (402)
Q Consensus 283 ------~Pr-~G-------~~Hv~NN~y~~w~~yai 304 (402)
.|. .| .+.++||.+.+-...++
T Consensus 212 gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i 247 (314)
T TIGR03805 212 GSIVASVPAGTGVVVMANRDVEIFGNVISNNDTANV 247 (314)
T ss_pred CCceecCCCCcEEEEEcccceEEECCEEeCCcceeE
Confidence 233 34 46899999987554443
No 15
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.58 E-value=0.0033 Score=65.94 Aligned_cols=115 Identities=17% Similarity=0.238 Sum_probs=73.9
Q ss_pred hHHHHhhcCC-C-eEEEEccceEEEeCceeeeccCeeEeccCCce--EEeCCceEE-EeeeccEEEEeeEEeecccCCCc
Q 015685 112 TLRYAVIQDE-P-LWIIFARDMTIRLKEELIMNSFKTIDGRGASV--HIAGGPCIT-IQYVTNIIIHGLNIHDCKKGGNA 186 (402)
Q Consensus 112 tLR~av~~~~-P-~~IvF~~~g~I~L~~~L~v~snkTI~G~ga~~--~I~~G~gi~-i~~a~NVIIrnL~i~~~~~~~~~ 186 (402)
.|+.|+.+-. | -.|++.. |+- +...|.+.+++||.|+.... .|.++.++. -..++||-|++|+|++. +.
T Consensus 56 ALQaAIdaAa~gG~tV~Lp~-G~Y-~~G~L~L~spltL~G~~gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGs--G~-- 129 (455)
T TIGR03808 56 ALQRAIDEAARAQTPLALPP-GVY-RTGPLRLPSGAQLIGVRGATRLVFTGGPSLLSSEGADGIGLSGLTLDGG--GI-- 129 (455)
T ss_pred HHHHHHHHhhcCCCEEEECC-Cce-ecccEEECCCcEEEecCCcEEEEEcCCceEEEEecCCCeEEEeeEEEeC--CC--
Confidence 3888876522 2 3455554 333 24778899999999985432 355444444 36799999999999862 10
Q ss_pred ccccCCCCCCCccccCCCeEEEeCCccEEEEeeeeecCC-CCeeEeecCCeeEEEEcceec
Q 015685 187 MVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCD-DGLVDAIHGSTAITISNNFMT 246 (402)
Q Consensus 187 ~ir~s~~~~g~~~~~d~DaIsi~gs~nVWIDHcs~s~~~-DgliDv~~gs~~VTISnn~f~ 246 (402)
......-+|.+.+++++-|.+|.|.... .|.. ..++. ..|++|.+.
T Consensus 130 -----------dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~--L~~~~-~~I~~N~I~ 176 (455)
T TIGR03808 130 -----------PLPQRRGLIHCQGGRDVRITDCEITGSGGNGIW--LETVS-GDISGNTIT 176 (455)
T ss_pred -----------cccCCCCEEEEccCCceEEEeeEEEcCCcceEE--EEcCc-ceEecceEe
Confidence 0113445888888999999999999884 6654 23444 444444443
No 16
>PLN03010 polygalacturonase
Probab=97.57 E-value=0.0037 Score=65.13 Aligned_cols=98 Identities=17% Similarity=0.172 Sum_probs=63.9
Q ss_pred cCCCeEEEeCCccEEEEeeeeecCCCCeeEeecCCeeEEEEcceecccCeeeeecCCCCc-cCCCcceEEEEeeeeCCCC
Q 015685 201 SDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTY-TQDKNMQVTIAFNHFGEGL 279 (402)
Q Consensus 201 ~d~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~-~~d~~~~vTi~~N~f~~~~ 279 (402)
...|||-+..++||+|.+|.+... |-+|.++.++++++|.++.... ..+.-||+--+. ..+....|++..+.|. +.
T Consensus 205 ~NTDGiDi~~s~nV~I~n~~I~~g-DDcIaiksgs~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~-~t 281 (409)
T PLN03010 205 PNTDGIDISYSTNINIFDSTIQTG-DDCIAINSGSSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHCTFN-QT 281 (409)
T ss_pred CCCCceeeeccceEEEEeeEEecC-CCeEEecCCCCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEEe-CC
Confidence 367999999999999999988877 7788888888887777666542 224556763221 2234568899999884 33
Q ss_pred CCCCCC-----CcEEEEEcceecCCcce
Q 015685 280 VQRIPR-----HGYFHVVNNDYTHWEMY 302 (402)
Q Consensus 280 ~~R~Pr-----~G~~Hv~NN~y~~w~~y 302 (402)
. +.=| .|.-.+-|=.|++..|.
T Consensus 282 ~-~GirIKt~~G~~G~v~nItf~nI~m~ 308 (409)
T PLN03010 282 T-NGARIKTWQGGQGYARNISFENITLI 308 (409)
T ss_pred C-cceEEEEecCCCEEEEEeEEEeEEEe
Confidence 2 2223 22334555555555443
No 17
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.33 E-value=0.007 Score=55.63 Aligned_cols=39 Identities=26% Similarity=0.309 Sum_probs=28.4
Q ss_pred HHHHh--h-cCCCeEEEEccceEEEeCceeeeccCeeEeccCC
Q 015685 113 LRYAV--I-QDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGA 152 (402)
Q Consensus 113 LR~av--~-~~~P~~IvF~~~g~I~L~~~L~v~snkTI~G~ga 152 (402)
|+.|+ . ..+..+|.|- .|+..+++.|.+.|++||.|.|.
T Consensus 21 iq~Ai~~~~~~~g~~v~~P-~G~Y~i~~~l~~~s~v~l~G~g~ 62 (225)
T PF12708_consen 21 IQAAIDAAAAAGGGVVYFP-PGTYRISGTLIIPSNVTLRGAGG 62 (225)
T ss_dssp HHHHHHHHCSTTSEEEEE--SEEEEESS-EEE-TTEEEEESST
T ss_pred HHHhhhhcccCCCeEEEEc-CcEEEEeCCeEcCCCeEEEccCC
Confidence 88888 2 3455666665 57999999999999999999876
No 18
>PLN02218 polygalacturonase ADPG
Probab=97.32 E-value=0.012 Score=61.71 Aligned_cols=85 Identities=19% Similarity=0.309 Sum_probs=66.3
Q ss_pred EEEeeeccEEEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEeCCccEEEEeeeeec-----CCCCeeEeecCCe
Q 015685 162 ITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSN-----CDDGLVDAIHGST 236 (402)
Q Consensus 162 i~i~~a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~gs~nVWIDHcs~s~-----~~DgliDv~~gs~ 236 (402)
|++.+++|+.|++|++++. ..=.|.+..++||.|++.++.. -+|| || ...++
T Consensus 195 i~f~~~~nv~I~gitl~nS---------------------p~w~i~~~~~~nV~i~~v~I~a~~~spNTDG-Id-i~ss~ 251 (431)
T PLN02218 195 LTFYNSKSLIVKNLRVRNA---------------------QQIQISIEKCSNVQVSNVVVTAPADSPNTDG-IH-ITNTQ 251 (431)
T ss_pred EEEEccccEEEeCeEEEcC---------------------CCEEEEEEceeeEEEEEEEEeCCCCCCCCCc-Ee-ecccc
Confidence 6678999999999999873 1235788899999999999876 4566 44 45789
Q ss_pred eEEEEcceecccCeeeeecCCCCccCCCcceEEEEeeeeC
Q 015685 237 AITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFG 276 (402)
Q Consensus 237 ~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTi~~N~f~ 276 (402)
+|+|++|.|..-+.+.-|.+.- ..|++.++.++
T Consensus 252 nV~I~n~~I~tGDDcIaIksgs-------~nI~I~n~~c~ 284 (431)
T PLN02218 252 NIRVSNSIIGTGDDCISIESGS-------QNVQINDITCG 284 (431)
T ss_pred eEEEEccEEecCCceEEecCCC-------ceEEEEeEEEE
Confidence 9999999999888777775432 26788777774
No 19
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.26 E-value=0.0028 Score=54.53 Aligned_cols=129 Identities=21% Similarity=0.241 Sum_probs=74.1
Q ss_pred CceEEEeeeccEEEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEeCCccEEEEeeeeecCCCCeeEeecCCeeE
Q 015685 159 GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAI 238 (402)
Q Consensus 159 G~gi~i~~a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~V 238 (402)
+.+|.+...+++.|++-+|++ .+.+|.+.+..++.|+.|.|+... ..+.+ ..+..+
T Consensus 23 ~~gi~~~~~~~~~i~n~~i~~----------------------~~~gi~~~~~~~~~i~~~~~~~~~-~~i~~-~~~~~~ 78 (158)
T PF13229_consen 23 GDGIHVSGSSNITIENCTISN----------------------GGYGIYVSGGSNVTISNNTISDNG-SGIYV-SGSSNI 78 (158)
T ss_dssp SECEEE-SSCESEEES-EEES----------------------STTSEEEECCES-EEES-EEES-S-EEEEC-CS-CS-
T ss_pred CeEEEEEcCCCeEEECeEEEC----------------------CCcEEEEecCCCeEEECeEEEEcc-ceEEE-EecCCc
Confidence 456777777777888888874 356788888899999999999888 44443 378889
Q ss_pred EEEcceecccCe-eeeecCCCCccCCCcceEEEEeeeeCCCCCCCCCC---Cc--EEEEEcceecCCcceeeccCCCce-
Q 015685 239 TISNNFMTHHDK-VMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPR---HG--YFHVVNNDYTHWEMYAIGGSANPT- 311 (402)
Q Consensus 239 TISnn~f~~H~k-~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~Pr---~G--~~Hv~NN~y~~w~~yaigg~~~~~- 311 (402)
+|++|.|.+... ++.+.. ....+++.+|.|. +..+..=. .. .+-+.+|.+++-..+++.......
T Consensus 79 ~i~~~~i~~~~~~gi~~~~-------~~~~~~i~~n~~~-~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~ 150 (158)
T PF13229_consen 79 TIENNRIENNGDYGIYISN-------SSSNVTIENNTIH-NNGGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSN 150 (158)
T ss_dssp EEES-EEECSSS-SCE-TC-------EECS-EEES-EEE-CCTTSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS-
T ss_pred eecCcEEEcCCCccEEEec-------cCCCEEEEeEEEE-eCcceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCe
Confidence 999999987655 444432 0125788888884 32211111 22 466688888877677774444333
Q ss_pred eeeecceE
Q 015685 312 INSQGNRF 319 (402)
Q Consensus 312 i~~egN~F 319 (402)
+.+.+|.|
T Consensus 151 ~~v~~n~~ 158 (158)
T PF13229_consen 151 CTVTNNTF 158 (158)
T ss_dssp -EEES-E-
T ss_pred EEEECCCC
Confidence 77788876
No 20
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.24 E-value=0.021 Score=59.00 Aligned_cols=175 Identities=14% Similarity=0.159 Sum_probs=127.2
Q ss_pred HHHHhhcCCCeEEEEccceEEEeCceeeeccCeeEeccCCceEEe--CCceEEE---------eeeccEEEEeeEEeecc
Q 015685 113 LRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIA--GGPCITI---------QYVTNIIIHGLNIHDCK 181 (402)
Q Consensus 113 LR~av~~~~P~~IvF~~~g~I~L~~~L~v~snkTI~G~ga~~~I~--~G~gi~i---------~~a~NVIIrnL~i~~~~ 181 (402)
|-.|+.+-.. |..+-+-+-+++++|.|.+..+|+|+||-+.|. ++.++.+ .+-.+|.+.|++|..-
T Consensus 57 le~~I~~haK--VaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~gM~~VtF~ni~F~~~- 133 (386)
T PF01696_consen 57 LEEAIRQHAK--VALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVGMEGVTFVNIRFEGR- 133 (386)
T ss_pred HHHHHHhcCE--EEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEeeeeeeEEEEEEEecC-
Confidence 7788766542 556666677788999999999999999998885 3444654 3567899999998741
Q ss_pred cCCCcccccCCCCCCCccccCCCeEEEeCCccEEEEeeeeecCCCCeeEeecCCeeEEEEcceecccCeeeeecCCCCcc
Q 015685 182 KGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYT 261 (402)
Q Consensus 182 ~~~~~~ir~s~~~~g~~~~~d~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~ 261 (402)
..--|+-+...+++.|.-|+|....-=.++.. ....|..|+|..-+|+.. +.+
T Consensus 134 -------------------~~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~-~~~---- 186 (386)
T PF01696_consen 134 -------------------DTFSGVVFHANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIV-SRG---- 186 (386)
T ss_pred -------------------CccceeEEEecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEee-cCC----
Confidence 12457788889999999999999877777653 467899999988888763 222
Q ss_pred CCCcceEEEEeeeeCCCCCCCCCCCcEEEEEcceecCCcceeeccCCCceeeeecceEeCCCC
Q 015685 262 QDKNMQVTIAFNHFGEGLVQRIPRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDR 324 (402)
Q Consensus 262 ~d~~~~vTi~~N~f~~~~~~R~Pr~G~~Hv~NN~y~~w~~yaigg~~~~~i~~egN~F~~~~~ 324 (402)
+.++++.+|.| +.+.=-.--.|..++.+|...+-.-..+ ...+..+.+|.|..+.+
T Consensus 187 ---~~~lsVk~C~F-ekC~igi~s~G~~~i~hn~~~ec~Cf~l---~~g~g~i~~N~v~~~~~ 242 (386)
T PF01696_consen 187 ---KSKLSVKKCVF-EKCVIGIVSEGPARIRHNCASECGCFVL---MKGTGSIKHNMVCGPND 242 (386)
T ss_pred ---cceEEeeheee-eheEEEEEecCCeEEecceecccceEEE---EcccEEEeccEEeCCCC
Confidence 34788899999 5544221116788999999987653322 12235778899987766
No 21
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.04 E-value=0.015 Score=55.17 Aligned_cols=130 Identities=22% Similarity=0.196 Sum_probs=93.5
Q ss_pred CceEEEeeeccEEEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEeCCccEEEEeeeeecCCCCeeEeecCCeeE
Q 015685 159 GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAI 238 (402)
Q Consensus 159 G~gi~i~~a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~V 238 (402)
..++.+..++++.|++.+|++. ..||.+..++++-|..|.++.+.+|.. ...+.+.
T Consensus 35 ~~gi~~~~s~~~~I~~n~i~~~----------------------~~GI~~~~s~~~~i~~n~i~~n~~Gi~--l~~s~~~ 90 (236)
T PF05048_consen 35 RDGIYVENSDNNTISNNTISNN----------------------RYGIHLMGSSNNTIENNTISNNGYGIY--LMGSSNN 90 (236)
T ss_pred CCEEEEEEcCCeEEEeeEEECC----------------------CeEEEEEccCCCEEEeEEEEccCCCEE--EEcCCCc
Confidence 3456778899999999988752 578999999999999999999998866 3455556
Q ss_pred EEEcceecccCeeeeecCCCCccCCCcceEEEEeeeeCCCCCCCCCC--CcEEEEEcceecCCcceeec-cCCCceeeee
Q 015685 239 TISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPR--HGYFHVVNNDYTHWEMYAIG-GSANPTINSQ 315 (402)
Q Consensus 239 TISnn~f~~H~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~Pr--~G~~Hv~NN~y~~w~~yaig-g~~~~~i~~e 315 (402)
+|++|.|.+...+.++-.+. ..++..|.|. +...-.=. .....+.+|.+.+-..|+|- ......-.+.
T Consensus 91 ~I~~N~i~~n~~GI~l~~s~--------~~~I~~N~i~-~~~~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~ 161 (236)
T PF05048_consen 91 TISNNTISNNGYGIYLYGSS--------NNTISNNTIS-NNGYGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTIY 161 (236)
T ss_pred EEECCEecCCCceEEEeeCC--------ceEEECcEEe-CCCEEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEEE
Confidence 99999999877777665443 4678888873 22211101 23567889999877666665 4444557788
Q ss_pred cceEeC
Q 015685 316 GNRFAA 321 (402)
Q Consensus 316 gN~F~~ 321 (402)
+|+|..
T Consensus 162 ~N~f~N 167 (236)
T PF05048_consen 162 NNNFNN 167 (236)
T ss_pred CCCccC
Confidence 999933
No 22
>PLN03003 Probable polygalacturonase At3g15720
Probab=96.89 E-value=0.017 Score=61.07 Aligned_cols=141 Identities=18% Similarity=0.301 Sum_probs=93.4
Q ss_pred CeEEEEccceEEEeCceeeeccCeeEeccCCceEE---eCCceEEEeeeccEEEEeeEEeecccCCCcccccCCCCCCCc
Q 015685 122 PLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHI---AGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWR 198 (402)
Q Consensus 122 P~~IvF~~~g~I~L~~~L~v~snkTI~G~ga~~~I---~~G~gi~i~~a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~ 198 (402)
..||.|..- ..|.+...=||+|||..-.- ..-.-|.+.+++||.|++|++++.
T Consensus 104 ~~wI~f~~~------~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NS------------------ 159 (456)
T PLN03003 104 DQWILFTDI------EGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDS------------------ 159 (456)
T ss_pred cceEEEEcc------cceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecC------------------
Confidence 348888642 23555555689999863210 001246788999999999999873
Q ss_pred cccCCCeEEEeCCccEEEEeeeeec-----CCCCeeEeecCCeeEEEEcceecccCeeeeecCCCCccCCCcceEEEEee
Q 015685 199 TVSDGDGVSIFGGTHIWVDHCSLSN-----CDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFN 273 (402)
Q Consensus 199 ~~~d~DaIsi~gs~nVWIDHcs~s~-----~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTi~~N 273 (402)
..=.|.+.+++||.|++.++.. -+|| || ...+++|+|.+|.+..-|.+.-+.+.-+ ++++.++
T Consensus 160 ---p~w~i~i~~c~nV~i~~l~I~ap~~spNTDG-ID-i~~S~nV~I~n~~I~tGDDCIaiksgs~-------NI~I~n~ 227 (456)
T PLN03003 160 ---PMAHIHISECNYVTISSLRINAPESSPNTDG-ID-VGASSNVVIQDCIIATGDDCIAINSGTS-------NIHISGI 227 (456)
T ss_pred ---CcEEEEEeccccEEEEEEEEeCCCCCCCCCc-Ee-ecCcceEEEEecEEecCCCeEEeCCCCc-------cEEEEee
Confidence 1234778899999999999986 3666 45 4678999999999998888777765421 5666666
Q ss_pred eeCCCC------CCCCCC---CcEEEEEcceecC
Q 015685 274 HFGEGL------VQRIPR---HGYFHVVNNDYTH 298 (402)
Q Consensus 274 ~f~~~~------~~R~Pr---~G~~Hv~NN~y~~ 298 (402)
.++.+. ..+... .-.+++.|+.+++
T Consensus 228 ~c~~GHGISIGSlg~~g~~~~V~NV~v~n~~~~~ 261 (456)
T PLN03003 228 DCGPGHGISIGSLGKDGETATVENVCVQNCNFRG 261 (456)
T ss_pred EEECCCCeEEeeccCCCCcceEEEEEEEeeEEEC
Confidence 653211 111111 1246777777765
No 23
>PLN02155 polygalacturonase
Probab=96.86 E-value=0.02 Score=59.57 Aligned_cols=139 Identities=19% Similarity=0.325 Sum_probs=92.0
Q ss_pred eEEEEccceEEEeCceeeeccCeeEeccCCceEEe--CC-------ceEEEeeeccEEEEeeEEeecccCCCcccccCCC
Q 015685 123 LWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIA--GG-------PCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPR 193 (402)
Q Consensus 123 ~~IvF~~~g~I~L~~~L~v~snkTI~G~ga~~~I~--~G-------~gi~i~~a~NVIIrnL~i~~~~~~~~~~ir~s~~ 193 (402)
.||.|.. ...+.+.. =||+|||..-.-. .+ ..|.+..++||.|++|++++. |
T Consensus 107 ~wi~~~~------~~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nS-p----------- 167 (394)
T PLN02155 107 YWILFNK------VNRFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNS-Q----------- 167 (394)
T ss_pred eeEEEEC------cCCCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcC-C-----------
Confidence 4666644 23344444 6899998642110 01 236778999999999999863 1
Q ss_pred CCCCccccCCCeEEEeCCccEEEEeeeeecC-----CCCeeEeecCCeeEEEEcceecccCeeeeecCCCCccCCCcceE
Q 015685 194 HFGWRTVSDGDGVSIFGGTHIWVDHCSLSNC-----DDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQV 268 (402)
Q Consensus 194 ~~g~~~~~d~DaIsi~gs~nVWIDHcs~s~~-----~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~v 268 (402)
.=.|.+.+++||.|+|.++..- .|| || ...+++|+|++|.|..-+....+++..+ +|
T Consensus 168 ---------~w~i~~~~~~nv~i~~v~I~~p~~~~NtDG-id-i~~s~nV~I~~~~I~~gDDcIaik~gs~-------nI 229 (394)
T PLN02155 168 ---------VSHMTLNGCTNVVVRNVKLVAPGNSPNTDG-FH-VQFSTGVTFTGSTVQTGDDCVAIGPGTR-------NF 229 (394)
T ss_pred ---------CeEEEEECeeeEEEEEEEEECCCCCCCCCc-cc-cccceeEEEEeeEEecCCceEEcCCCCc-------eE
Confidence 2347778999999999999653 465 44 4578999999999998888887766422 67
Q ss_pred EEEeeeeCCC------CCCCCCC---CcEEEEEcceecC
Q 015685 269 TIAFNHFGEG------LVQRIPR---HGYFHVVNNDYTH 298 (402)
Q Consensus 269 Ti~~N~f~~~------~~~R~Pr---~G~~Hv~NN~y~~ 298 (402)
++..+.++.+ ...+-+- .-.+.|-|+.+.+
T Consensus 230 ~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~ 268 (394)
T PLN02155 230 LITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTG 268 (394)
T ss_pred EEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeC
Confidence 7777666421 1222221 2256777888765
No 24
>PLN02197 pectinesterase
Probab=96.79 E-value=0.022 Score=61.91 Aligned_cols=137 Identities=25% Similarity=0.331 Sum_probs=86.5
Q ss_pred Ccccccc--ccccccccccccCCCCCCCCCcE---EEEcCCCCCCCCCCCch---hHHHHhhc----CCCeEEEEccceE
Q 015685 65 DPNWEKN--RQRLADCAIGFGKNAVGGRDGRI---YVVTDPGDYDVVNPKPG---TLRYAVIQ----DEPLWIIFARDMT 132 (402)
Q Consensus 65 ~~~w~~~--r~~la~~a~GfG~~ttGG~gG~v---y~VT~~~D~d~~~p~pG---tLR~av~~----~~P~~IvF~~~g~ 132 (402)
.|.|-.. |+-|+ +.+.|.++-||.++.+ ++|- .| +.| |+.+||.. +..|+|||=+.|+
T Consensus 244 ~p~w~~~~~r~ll~--~~~~~~~~~~~~~~~~~~~~vVa--~d------GsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~Gv 313 (588)
T PLN02197 244 IPTWVSGADRKLMA--KAGRGANAGGGGGGKIKATHVVA--KD------GSGQFKTISQAVMACPDKNPGRCIIHIKAGI 313 (588)
T ss_pred CCCCCCccchhhhc--cCcccccccccccccccccEEEc--CC------CCCCcCCHHHHHHhccccCCceEEEEEeCce
Confidence 5888654 56664 3555667777776642 3332 12 555 78889854 3346666666677
Q ss_pred EEeCceeee---ccCeeEeccCCceE-Ee--------CCce----EE-EeeeccEEEEeeEEeecccCCCcccccCCCCC
Q 015685 133 IRLKEELIM---NSFKTIDGRGASVH-IA--------GGPC----IT-IQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHF 195 (402)
Q Consensus 133 I~L~~~L~v---~snkTI~G~ga~~~-I~--------~G~g----i~-i~~a~NVIIrnL~i~~~~~~~~~~ir~s~~~~ 195 (402)
-+ +.+.| .+|+||.|.|..-+ |. +|.. =+ ...+++++.|||+|++....
T Consensus 314 Y~--E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~v~~~~F~a~nitf~Ntag~------------ 379 (588)
T PLN02197 314 YN--EQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQVESEGFMAKWIGFKNTAGP------------ 379 (588)
T ss_pred EE--EEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccceeEEEEECCcEEEEEeEEEeCCCC------------
Confidence 53 55555 47899999987543 32 2211 01 13689999999999984311
Q ss_pred CCccccCCCeEEEe-CCccEEEEeeeeecCCCCeeE
Q 015685 196 GWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 230 (402)
Q Consensus 196 g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~DgliD 230 (402)
.+.-|+-+. .+..+-+.+|+|.-..|=|.+
T Consensus 380 -----~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~ 410 (588)
T PLN02197 380 -----MGHQAVAIRVNGDRAVIFNCRFDGYQDTLYV 410 (588)
T ss_pred -----CCCceEEEEecCCcEEEEEeEEEecCcceEe
Confidence 123455554 478899999999988776664
No 25
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=96.73 E-value=0.075 Score=52.01 Aligned_cols=190 Identities=21% Similarity=0.221 Sum_probs=102.9
Q ss_pred hHHHHhhcCCCeEEEEccceEEEeC----ceeeeccCeeEeccCCc-----eEEeC--------Cce-------EEEeee
Q 015685 112 TLRYAVIQDEPLWIIFARDMTIRLK----EELIMNSFKTIDGRGAS-----VHIAG--------GPC-------ITIQYV 167 (402)
Q Consensus 112 tLR~av~~~~P~~IvF~~~g~I~L~----~~L~v~snkTI~G~ga~-----~~I~~--------G~g-------i~i~~a 167 (402)
||.+|+.+-.|-.+|+=..|+-+-. -+|.+.+.+||.|..+. +.+.+ |.+ ++|..+
T Consensus 17 Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~~ 96 (246)
T PF07602_consen 17 TITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIILA 96 (246)
T ss_pred HHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEec
Confidence 7888987765544333345665543 25778888888885431 22221 111 445567
Q ss_pred ccEEEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEeCCccEEEEeeeeecC-CCCeeEeec----CCeeEEEEc
Q 015685 168 TNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNC-DDGLVDAIH----GSTAITISN 242 (402)
Q Consensus 168 ~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~gs~nVWIDHcs~s~~-~DgliDv~~----gs~~VTISn 242 (402)
++..|++++|++..+ ..+-||.|.++ +.-|..|+|+.+ .+|.+.... ...+++|+.
T Consensus 97 ~~~~i~GvtItN~n~------------------~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~G 157 (246)
T PF07602_consen 97 NNATISGVTITNPNI------------------ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISG 157 (246)
T ss_pred CCCEEEEEEEEcCCC------------------CcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEeec
Confidence 888888888886321 25678999877 888899999996 666543222 335677888
Q ss_pred ceecccCeeeeecCCCCccCCCcceEEEEeeeeCCCCCCCCCCCcE---EEEEcceecCCcceeeccCC--Cceeeeecc
Q 015685 243 NFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRHGY---FHVVNNDYTHWEMYAIGGSA--NPTINSQGN 317 (402)
Q Consensus 243 n~f~~H~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~Pr~G~---~Hv~NN~y~~w~~yaigg~~--~~~i~~egN 317 (402)
|.+.....+.-+-.+......+.....|+.|.+|-......|-.|. -.+-||.+.+-+.|.+--.. .-++.+.||
T Consensus 158 N~~~~~~~Gi~i~~~~~~~~n~I~NN~I~~N~~Gi~~~~~~pDlG~~s~~~~g~N~~~~N~~~Dl~~~~~~~~~l~a~gN 237 (246)
T PF07602_consen 158 NSIYFNKTGISISDNAAPVENKIENNIIENNNIGIVAIGDAPDLGTGSEGSPGNNIFRNNGRYDLNNSATPGQTLYAVGN 237 (246)
T ss_pred ceEEecCcCeEEEcccCCccceeeccEEEeCCcCeEeeccCCccccCCCCCCCCcEEecCcceeeEeccCCceeEEEeCC
Confidence 8776543322221111000011112233333332111111143332 23666777766666665432 236677777
Q ss_pred eEe
Q 015685 318 RFA 320 (402)
Q Consensus 318 ~F~ 320 (402)
...
T Consensus 238 ~ld 240 (246)
T PF07602_consen 238 QLD 240 (246)
T ss_pred ccC
Confidence 554
No 26
>PLN02480 Probable pectinesterase
Probab=96.68 E-value=0.044 Score=56.03 Aligned_cols=118 Identities=18% Similarity=0.316 Sum_probs=76.7
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCCc-eEEeC---------CceEEEeeeccEEEEe
Q 015685 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGAS-VHIAG---------GPCITIQYVTNIIIHG 174 (402)
Q Consensus 112 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~-~~I~~---------G~gi~i~~a~NVIIrn 174 (402)
|+.+||.+ +..+++||=..|+-+ +.|.| .+|+||.|.+.. ..|.. +..+++ .+++++++|
T Consensus 62 TIQ~AIdaap~~~~~~~~I~Ik~GvY~--E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV-~a~~f~a~n 138 (343)
T PLN02480 62 SVQSAIDAVPVGNSEWIIVHLRKGVYR--EKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTV-EAPHFVAFG 138 (343)
T ss_pred cHHHHHhhCccCCCceEEEEEcCcEEE--EEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEE-ECCCEEEEe
Confidence 79999854 234566655566654 56666 678999998753 33432 223333 589999999
Q ss_pred eEEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccEEEEeeeeecCCCCeeEeecCCeeEEEEcceecc
Q 015685 175 LNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTH 247 (402)
Q Consensus 175 L~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~ 247 (402)
|+|++..+.+. ....++-|+-+. .+.++-+.+|.|.-..|=|.+- ...--+.+|++..
T Consensus 139 LTf~Nta~~g~------------~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~C~IeG 197 (343)
T PLN02480 139 ISIRNDAPTGM------------AFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDY---KGRHYYHSCYIQG 197 (343)
T ss_pred eEEEecCCCCC------------CCCCCCceEEEEecCCcEEEEeeEEecccceeEeC---CCCEEEEeCEEEe
Confidence 99998643210 001244566664 6899999999999998888752 2244455666654
No 27
>PLN02793 Probable polygalacturonase
Probab=96.48 E-value=0.067 Score=56.46 Aligned_cols=109 Identities=17% Similarity=0.254 Sum_probs=76.7
Q ss_pred eeeeccCeeEeccCCceE-----EeC-------CceEEEeeeccEEEEeeEEeecccCCCcccccCCCCCCCccccCCCe
Q 015685 138 ELIMNSFKTIDGRGASVH-----IAG-------GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDG 205 (402)
Q Consensus 138 ~L~v~snkTI~G~ga~~~-----I~~-------G~gi~i~~a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~Da 205 (402)
.|.|...=||+|+|..-. +.. -.-|.+.+++||.|++|++++. ..=.
T Consensus 144 ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nS---------------------p~~~ 202 (443)
T PLN02793 144 HLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDS---------------------QQMH 202 (443)
T ss_pred eEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcC---------------------CCeE
Confidence 344544568888885321 110 0136678999999999999863 1223
Q ss_pred EEEeCCccEEEEeeeeec-----CCCCeeEeecCCeeEEEEcceecccCeeeeecCCCCccCCCcceEEEEeeeeC
Q 015685 206 VSIFGGTHIWVDHCSLSN-----CDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFG 276 (402)
Q Consensus 206 Isi~gs~nVWIDHcs~s~-----~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTi~~N~f~ 276 (402)
+.+.+++||.|++.++.. -+||. | ...+++|+|++|.|..-+.+..+.... .+|+|..+.++
T Consensus 203 i~~~~~~nv~i~~l~I~~p~~spNTDGI-d-i~~s~nV~I~n~~I~~gDDcIaik~~s-------~nI~I~n~~c~ 269 (443)
T PLN02793 203 IAFTNCRRVTISGLKVIAPATSPNTDGI-H-ISASRGVVIKDSIVRTGDDCISIVGNS-------SRIKIRNIACG 269 (443)
T ss_pred EEEEccCcEEEEEEEEECCCCCCCCCcE-e-eeccceEEEEeCEEeCCCCeEEecCCc-------CCEEEEEeEEe
Confidence 677889999999999975 46664 4 467899999999999888877775432 16777777663
No 28
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=96.30 E-value=0.055 Score=54.50 Aligned_cols=108 Identities=21% Similarity=0.347 Sum_probs=73.4
Q ss_pred eeeccCeeEeccCCceEEeCC----------ceEEEeeeccEEEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEE
Q 015685 139 LIMNSFKTIDGRGASVHIAGG----------PCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSI 208 (402)
Q Consensus 139 L~v~snkTI~G~ga~~~I~~G----------~gi~i~~a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi 208 (402)
+.+...=||+|+|..=.-..+ .-|.+.+++|+.|++|++++. | .=.+.+
T Consensus 62 i~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~ns-p--------------------~w~~~~ 120 (326)
T PF00295_consen 62 ITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNS-P--------------------FWHIHI 120 (326)
T ss_dssp EECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES--S--------------------SESEEE
T ss_pred EEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCC-C--------------------eeEEEE
Confidence 344445689999872100001 236788999999999999863 1 124788
Q ss_pred eCCccEEEEeeeeec-----CCCCeeEeecCCeeEEEEcceecccCeeeeecCCCCccCCCcceEEEEeeeeC
Q 015685 209 FGGTHIWVDHCSLSN-----CDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFG 276 (402)
Q Consensus 209 ~gs~nVWIDHcs~s~-----~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTi~~N~f~ 276 (402)
..++||.|+|.++.. -.||. | ..++.+|+|.+|.|...+.+.-+.+... .+++.+++|.
T Consensus 121 ~~~~nv~i~~i~I~~~~~~~NtDGi-d-~~~s~nv~I~n~~i~~gDD~Iaiks~~~-------ni~v~n~~~~ 184 (326)
T PF00295_consen 121 NDCDNVTISNITINNPANSPNTDGI-D-IDSSKNVTIENCFIDNGDDCIAIKSGSG-------NILVENCTCS 184 (326)
T ss_dssp ESEEEEEEESEEEEEGGGCTS--SE-E-EESEEEEEEESEEEESSSESEEESSEEC-------EEEEESEEEE
T ss_pred EccCCeEEcceEEEecCCCCCcceE-E-EEeeeEEEEEEeecccccCccccccccc-------ceEEEeEEEe
Confidence 899999999999975 36664 4 3578999999999998887776654322 6788888874
No 29
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=96.25 E-value=0.094 Score=54.75 Aligned_cols=166 Identities=20% Similarity=0.278 Sum_probs=103.4
Q ss_pred eEEEEccceEEEeCceeeeccCeeEeccCCceE------Ee-C----CceEEEeeeccEEEEeeEEeecccCCCcccccC
Q 015685 123 LWIIFARDMTIRLKEELIMNSFKTIDGRGASVH------IA-G----GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDS 191 (402)
Q Consensus 123 ~~IvF~~~g~I~L~~~L~v~snkTI~G~ga~~~------I~-~----G~gi~i~~a~NVIIrnL~i~~~~~~~~~~ir~s 191 (402)
.||.|.. -..|.|...=||+|+|..-. .. + -.-|.+..++||.|++|++++.
T Consensus 114 ~~i~~~~------~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nS----------- 176 (404)
T PLN02188 114 DWIEFGW------VNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNS----------- 176 (404)
T ss_pred ceEEEec------eeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcC-----------
Confidence 4777641 13456666788999986311 00 0 1235678899999999999873
Q ss_pred CCCCCCccccCCCeEEEeCCccEEEEeeeeec-----CCCCeeEeecCCeeEEEEcceecccCeeeeecCCCCccCCCcc
Q 015685 192 PRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSN-----CDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNM 266 (402)
Q Consensus 192 ~~~~g~~~~~d~DaIsi~gs~nVWIDHcs~s~-----~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~ 266 (402)
..=.|.+..++||.|++.++.. -.||. | ...+++|+|.+|.|..-+.+.-+.+..+
T Consensus 177 ----------p~w~i~~~~~~~v~i~~v~I~~~~~spNtDGi-d-i~~s~nV~I~n~~I~~GDDcIaiksg~~------- 237 (404)
T PLN02188 177 ----------KFFHIALVECRNFKGSGLKISAPSDSPNTDGI-H-IERSSGVYISDSRIGTGDDCISIGQGNS------- 237 (404)
T ss_pred ----------CCeEEEEEccccEEEEEEEEeCCCCCCCCCcE-e-eeCcccEEEEeeEEeCCCcEEEEccCCc-------
Confidence 1234778899999999999986 35664 4 4678999999999998888887754321
Q ss_pred eEEEEeeeeCCCC------CCCCCC---CcEEEEEcceecCCcceee------c---cCCCceeeeecceEeCCCCC
Q 015685 267 QVTIAFNHFGEGL------VQRIPR---HGYFHVVNNDYTHWEMYAI------G---GSANPTINSQGNRFAAPDRA 325 (402)
Q Consensus 267 ~vTi~~N~f~~~~------~~R~Pr---~G~~Hv~NN~y~~w~~yai------g---g~~~~~i~~egN~F~~~~~~ 325 (402)
++++.++.+..+. ..+.+- ...+.+-|+.+.+-. +++ + +..-..|.+++-.++....+
T Consensus 238 nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~-~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~p 313 (404)
T PLN02188 238 QVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTT-NGIRIKTWANSPGKSAATNMTFENIVMNNVTNP 313 (404)
T ss_pred cEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECCC-cEEEEEEecCCCCceEEEEEEEEeEEecCccce
Confidence 5677766663211 111111 235667777776532 111 1 11113466666666665544
No 30
>PLN03010 polygalacturonase
Probab=96.24 E-value=0.065 Score=56.01 Aligned_cols=110 Identities=20% Similarity=0.285 Sum_probs=75.5
Q ss_pred eEEEeeeccEEEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEeCCccEEEEeeeeec-----CCCCeeEeecCC
Q 015685 161 CITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSN-----CDDGLVDAIHGS 235 (402)
Q Consensus 161 gi~i~~a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~gs~nVWIDHcs~s~-----~~DgliDv~~gs 235 (402)
-|.+.+++||.|++|++++. | .=.|.+.+++||.|++..+.. -.||. | ...+
T Consensus 159 ~l~~~~~~nv~v~gitl~ns-p--------------------~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGi-D-i~~s 215 (409)
T PLN03010 159 ALHISKCDNLTINGITSIDS-P--------------------KNHISIKTCNYVAISKINILAPETSPNTDGI-D-ISYS 215 (409)
T ss_pred eEEEEeecCeEEeeeEEEcC-C--------------------ceEEEEeccccEEEEEEEEeCCCCCCCCCce-e-eecc
Confidence 37788999999999999873 1 224778899999999999875 46664 4 4578
Q ss_pred eeEEEEcceecccCeeeeecCCCCccCCCcceEEEEeeeeCCCC----CCCCCC---CcEEEEEcceecC
Q 015685 236 TAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGL----VQRIPR---HGYFHVVNNDYTH 298 (402)
Q Consensus 236 ~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~----~~R~Pr---~G~~Hv~NN~y~~ 298 (402)
++|+|++|.+..-+.+.-+.+..+ ...|+...+..+++. ...... .-.++|-|+.+++
T Consensus 216 ~nV~I~n~~I~~gDDcIaiksgs~-----ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~ 280 (409)
T PLN03010 216 TNINIFDSTIQTGDDCIAINSGSS-----NINITQINCGPGHGISVGSLGADGANAKVSDVHVTHCTFNQ 280 (409)
T ss_pred ceEEEEeeEEecCCCeEEecCCCC-----cEEEEEEEeECcCCEEEccCCCCCCCCeeEEEEEEeeEEeC
Confidence 999999999999888887765421 235555555544321 111111 2256777777765
No 31
>PLN02682 pectinesterase family protein
Probab=96.05 E-value=2.3 Score=44.16 Aligned_cols=105 Identities=20% Similarity=0.277 Sum_probs=63.2
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCCce-EEe----------CCceE------E-Eee
Q 015685 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASV-HIA----------GGPCI------T-IQY 166 (402)
Q Consensus 112 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~-~I~----------~G~gi------~-i~~ 166 (402)
|+.+||.. +..+++||=+.|+- ++.|.| .+|+||.|.|..- .|. .|..+ + ...
T Consensus 84 TIQ~AIdavP~~~~~r~vI~Ik~G~Y--~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v~ 161 (369)
T PLN02682 84 TIQAAIDSLPVINLVRVVIKVNAGTY--REKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAVN 161 (369)
T ss_pred CHHHHHhhccccCCceEEEEEeCcee--eEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEEE
Confidence 78888854 22345555455654 355555 6899999998743 332 11001 1 236
Q ss_pred eccEEEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccEEEEeeeeecCCCCeeE
Q 015685 167 VTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 230 (402)
Q Consensus 167 a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~DgliD 230 (402)
+++++.+||+|++..+.. .+ | ..+.-|+.+. .+.++-+.+|.|.-..|=|.+
T Consensus 162 a~~F~a~nlTf~Nt~~~~------~~---g---~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~ 214 (369)
T PLN02682 162 SPYFIAKNITFKNTAPVP------PP---G---ALGKQAVALRISADTAAFYGCKFLGAQDTLYD 214 (369)
T ss_pred CCCeEEEeeEEEcccccC------CC---C---CCcccEEEEEecCCcEEEEcceEeccccceEE
Confidence 899999999999854311 00 1 1123344443 478889999999887665543
No 32
>smart00656 Amb_all Amb_all domain.
Probab=95.57 E-value=0.34 Score=45.33 Aligned_cols=134 Identities=18% Similarity=0.195 Sum_probs=80.3
Q ss_pred eccCeeEeccCCceEEeCCceEEEeeeccEEEEeeEEeecccCCCcccccCCCCCCCccccCCCe-EEEe-CCccEEEEe
Q 015685 141 MNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDG-VSIF-GGTHIWVDH 218 (402)
Q Consensus 141 v~snkTI~G~ga~~~I~~G~gi~i~~a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~Da-Isi~-gs~nVWIDH 218 (402)
|-.|++|.+-... ...++-+|.+..++||+|.+.+|....+- +.. ....|+ +.+. ++.+|=|-.
T Consensus 43 Iirnl~i~~~~~~-~~~~~D~i~~~~~~~VwIDHct~s~~~~~------------~~~-~~~~D~~~di~~~s~~vTvs~ 108 (190)
T smart00656 43 IIRNLTIHDPKPV-YGSDGDAISIDGSSNVWIDHVSLSGCTVT------------GFG-DDTYDGLIDIKNGSTYVTISN 108 (190)
T ss_pred EEeCCEEECCccC-CCCCCCEEEEeCCCeEEEEccEeEcceec------------cCC-CCCCCccEEECcccccEEEEC
Confidence 3467888775332 11235688888999999999999874211 110 112344 3443 467777777
Q ss_pred eeeecCCCCeeEeecCC------eeEEEEcceecccC-eeeeecCCCCccCCCcceEEEEeeeeCCCCCCC--CCC-CcE
Q 015685 219 CSLSNCDDGLVDAIHGS------TAITISNNFMTHHD-KVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQR--IPR-HGY 288 (402)
Q Consensus 219 cs~s~~~DgliDv~~gs------~~VTISnn~f~~H~-k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R--~Pr-~G~ 288 (402)
|.|....-+.+--...+ -.||+.+|+|.+.. +..++.. . ++-+..|+|. +..+- ..+ .+.
T Consensus 109 ~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r~--------g-~~hv~NN~~~-n~~~~~~~~~~~~~ 178 (190)
T smart00656 109 NYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVRF--------G-YVHVYNNYYT-GWTSYAIGGRMGAT 178 (190)
T ss_pred ceEecCCEEEEEccCCCccccccceEEEECcEEcCcccCCCcccC--------C-EEEEEeeEEe-CcccEeEecCCCcE
Confidence 77765444444211111 26999999998642 3343321 1 6788889984 43311 122 668
Q ss_pred EEEEcceecC
Q 015685 289 FHVVNNDYTH 298 (402)
Q Consensus 289 ~Hv~NN~y~~ 298 (402)
+.+-||||.+
T Consensus 179 v~~E~N~F~~ 188 (190)
T smart00656 179 ILSEGNYFEA 188 (190)
T ss_pred EEEECeEEEC
Confidence 9999999976
No 33
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=95.46 E-value=0.087 Score=55.51 Aligned_cols=162 Identities=14% Similarity=0.130 Sum_probs=92.2
Q ss_pred CeeEeccCCceEEeCCceEEEeeeccEEEEeeEEeecc------cCCCcccccCCCCCCCccccCCCeEEEeCCccEEEE
Q 015685 144 FKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCK------KGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVD 217 (402)
Q Consensus 144 nkTI~G~ga~~~I~~G~gi~i~~a~NVIIrnL~i~~~~------~~~~~~ir~s~~~~g~~~~~d~DaIsi~gs~nVWID 217 (402)
.+||+|.|.+-.=. -.+|.++.++++.|++.+|++.- .+..+.|++.. -.+ ....+|.+..++++.|.
T Consensus 121 GLtIdGsG~dl~~r-dAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~-I~g----~~~~~I~lw~S~g~~V~ 194 (455)
T TIGR03808 121 GLTLDGGGIPLPQR-RGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNT-ITQ----IAVTAIVSFDALGLIVA 194 (455)
T ss_pred eeEEEeCCCcccCC-CCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecce-Eec----cccceEEEeccCCCEEE
Confidence 34777777543212 23677889999999999998751 01111221110 001 12345888889999999
Q ss_pred eeeeecCCCCeeEeec-----------------------------------CCeeEEEEcceecccCeeeeecCCCCccC
Q 015685 218 HCSLSNCDDGLVDAIH-----------------------------------GSTAITISNNFMTHHDKVMLLGHSDTYTQ 262 (402)
Q Consensus 218 Hcs~s~~~DgliDv~~-----------------------------------gs~~VTISnn~f~~H~k~~LiG~sd~~~~ 262 (402)
+++++.+.|+.|-+.+ .+.+++|+.|.++++.+-.+.+.+-+
T Consensus 195 ~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nsss--- 271 (455)
T TIGR03808 195 RNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSAS--- 271 (455)
T ss_pred CCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEccc---
Confidence 9999999886554432 24578899999988884444443322
Q ss_pred CCcceEEEEeeeeCCCCCCCC-CC-CcE----EEEEcceecCC-cceeecc-CCCcee-eeecceEeC
Q 015685 263 DKNMQVTIAFNHFGEGLVQRI-PR-HGY----FHVVNNDYTHW-EMYAIGG-SANPTI-NSQGNRFAA 321 (402)
Q Consensus 263 d~~~~vTi~~N~f~~~~~~R~-Pr-~G~----~Hv~NN~y~~w-~~yaigg-~~~~~i-~~egN~F~~ 321 (402)
++.|..|.| ++ .|- -. +.| .-+.||.+++- ..|++-- .++.++ ..+||...+
T Consensus 272 ----~~~i~~N~~-~~--~R~~alhymfs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~~gn~irn 332 (455)
T TIGR03808 272 ----NIQITGNSV-SD--VREVALYSEFAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVVQGNIIRN 332 (455)
T ss_pred ----CcEEECcEe-ee--eeeeEEEEEEeCCCcEEeccEEecCcceEEEEeecCCceEEEEecceeec
Confidence 455666666 21 221 00 111 23667777643 3566522 233333 556776644
No 34
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=95.28 E-value=0.2 Score=54.08 Aligned_cols=95 Identities=16% Similarity=0.222 Sum_probs=65.6
Q ss_pred ceEEEeeeccEEEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEeCCccEEEEeeeeecCCCCeeEeec------
Q 015685 160 PCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIH------ 233 (402)
Q Consensus 160 ~gi~i~~a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~------ 233 (402)
.++..+.++|+.++||+|..-.+ ...|||-+..++||-|+-|.|+.+.| +|-++.
T Consensus 262 ~~~h~~~~~nl~~~nl~I~~~~~------------------~NtDG~d~~sc~NvlI~~~~fdtgDD-~I~iksg~~~~~ 322 (542)
T COG5434 262 WTVHPVDCDNLTFRNLTIDANRF------------------DNTDGFDPGSCSNVLIEGCRFDTGDD-CIAIKSGAGLDG 322 (542)
T ss_pred EEEeeecccCceecceEEECCCC------------------CCCCccccccceeEEEeccEEecCCc-eEEeecccCCcc
Confidence 35666889999999999975221 25799999999999999999999544 443332
Q ss_pred -----CCeeEEEEcceecccCeeeeecCCCCccCCCcceEEEEeeeeC
Q 015685 234 -----GSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFG 276 (402)
Q Consensus 234 -----gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTi~~N~f~ 276 (402)
-+.+|+|++|+|..-.-+..+|+. + ..+...+++-.|.|.
T Consensus 323 ~~~~~~~~~i~i~~c~~~~ghG~~v~Gse-~--~ggv~ni~ved~~~~ 367 (542)
T COG5434 323 KKGYGPSRNIVIRNCYFSSGHGGLVLGSE-M--GGGVQNITVEDCVMD 367 (542)
T ss_pred cccccccccEEEecceecccccceEeeee-c--CCceeEEEEEeeeec
Confidence 245799999999853333344432 1 112346788888883
No 35
>PLN02176 putative pectinesterase
Probab=95.26 E-value=0.55 Score=48.09 Aligned_cols=119 Identities=18% Similarity=0.248 Sum_probs=75.0
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCCceE-Ee--CC------ceEEEeeeccEEEEee
Q 015685 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IA--GG------PCITIQYVTNIIIHGL 175 (402)
Q Consensus 112 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~--~G------~gi~i~~a~NVIIrnL 175 (402)
|+.+||.. +..+++||-+.|+-+ +.|.| .+|+||.|.|...+ |. .+ ..+. ..+++++.+||
T Consensus 53 TIq~AIdavP~~~~~~~~I~Ik~GvY~--EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~-v~a~~F~a~nl 129 (340)
T PLN02176 53 TVQSAIDSIPLQNQNWIRILIQNGIYR--EKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFT-SYASNIIITGI 129 (340)
T ss_pred CHHHHHhhchhcCCceEEEEECCcEEE--EEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEE-EECCCEEEEee
Confidence 78888853 334566666677764 55555 67899999987543 32 11 1233 36899999999
Q ss_pred EEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccEEEEeeeeecCCCCeeEeecCCeeEEEEcceecc
Q 015685 176 NIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTH 247 (402)
Q Consensus 176 ~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~ 247 (402)
+|++..+..+ + -+ ...+-|+-+. .+..+-+.+|.|.-..|=|.+- ...--+.+|+++.
T Consensus 130 T~~Nt~~~~~------~--~~---~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~---~gRqyf~~CyIeG 188 (340)
T PLN02176 130 TFKNTYNIAS------N--SS---RPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDG---KGRHYYKRCVISG 188 (340)
T ss_pred EEEeCCCccC------C--CC---CCccceEEEEecCccEEEEccEEecccceeEeC---CcCEEEEecEEEe
Confidence 9998643100 0 00 1233455554 4688999999999888877762 2344556666654
No 36
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=94.67 E-value=0.45 Score=48.68 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=67.0
Q ss_pred eeeccCeeEeccCCceEEeCCceEEEeeeccEEEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEeCCccEEEEe
Q 015685 139 LIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDH 218 (402)
Q Consensus 139 L~v~snkTI~G~ga~~~I~~G~gi~i~~a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~gs~nVWIDH 218 (402)
|.+....|-++.--+-.|....||.+.++..+.|..-+|.+-.. .+....++||.+.+++.+-|=-
T Consensus 100 I~v~~~at~A~Vr~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~--------------~r~~~rGnGI~vyNa~~a~V~~ 165 (408)
T COG3420 100 IFVGRTATGAVVRHNDLIGNSFGIYLHGSADVRIEGNTIQGLAD--------------LRVAERGNGIYVYNAPGALVVG 165 (408)
T ss_pred EEeccCcccceEEcccccccceEEEEeccCceEEEeeEEeeccc--------------cchhhccCceEEEcCCCcEEEc
Confidence 33444444444322222344778999999999999999986432 1224679999999999999999
Q ss_pred eeeecCCCCeeEeecCCeeEEEEcceecc
Q 015685 219 CSLSNCDDGLVDAIHGSTAITISNNFMTH 247 (402)
Q Consensus 219 cs~s~~~DgliDv~~gs~~VTISnn~f~~ 247 (402)
+.+|...||... .-|..-+++.|.|++
T Consensus 166 ndisy~rDgIy~--~~S~~~~~~gnr~~~ 192 (408)
T COG3420 166 NDISYGRDGIYS--DTSQHNVFKGNRFRD 192 (408)
T ss_pred CccccccceEEE--cccccceecccchhh
Confidence 999999999984 456667777777764
No 37
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=94.59 E-value=0.52 Score=50.87 Aligned_cols=100 Identities=20% Similarity=0.263 Sum_probs=65.3
Q ss_pred hHHHHhhc-----CCCeEEEEccceEEEeCceeee---ccCeeEeccCCceE-EeC------CceE----E-EeeeccEE
Q 015685 112 TLRYAVIQ-----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPCI----T-IQYVTNII 171 (402)
Q Consensus 112 tLR~av~~-----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~------G~gi----~-i~~a~NVI 171 (402)
|+.+||.. +..|++||=+.|+-+ +.+.| .+|+||.|.|..-+ |.+ |.+- + ...++|++
T Consensus 239 TIq~AI~a~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaTv~v~~~~F~ 316 (529)
T PLN02170 239 TIGEALLSTSLESGGGRTVIYLKAGTYH--ENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTATVAAMGDGFI 316 (529)
T ss_pred hHHHHHHhcccccCCceEEEEEeCCeeE--EEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceEEEEEcCCeE
Confidence 78889853 224667776677753 55555 68999999987544 332 2110 1 24689999
Q ss_pred EEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccEEEEeeeeecCCCCeeE
Q 015685 172 IHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 230 (402)
Q Consensus 172 IrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~DgliD 230 (402)
.|||+|++.... ...-|+.+. .+..+.+.+|.|.-..|=|.+
T Consensus 317 a~nitf~Ntag~-----------------~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~ 359 (529)
T PLN02170 317 ARDITFVNSAGP-----------------NSEQAVALRVGSDKSVVYRCSVEGYQDSLYT 359 (529)
T ss_pred EEeeEEEecCCC-----------------CCCceEEEEecCCcEEEEeeeEeccCCccee
Confidence 999999985311 122344443 467888999999987776664
No 38
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=94.33 E-value=0.54 Score=50.97 Aligned_cols=112 Identities=16% Similarity=0.202 Sum_probs=70.5
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCCceE-EeC------Cc------eEEEeeeccEE
Q 015685 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GP------CITIQYVTNII 171 (402)
Q Consensus 112 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~------G~------gi~i~~a~NVI 171 (402)
|+.+||.. +..++|||=+.|+-+ +.+.| .+|+||.|.|...+ |.+ |. .+. ..+++++
T Consensus 244 TIq~Ai~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~-v~~~~F~ 320 (541)
T PLN02416 244 TITDAINFAPNNSNDRIIIYVREGVYE--ENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATLA-VSGEGFL 320 (541)
T ss_pred CHHHHHHhhhhcCCceEEEEEeCceeE--EEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEEE-EECCCeE
Confidence 78888853 445777776777653 55555 57999999987543 332 21 122 3589999
Q ss_pred EEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccEEEEeeeeecCCCCeeEeecCCeeEEEEcceec
Q 015685 172 IHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMT 246 (402)
Q Consensus 172 IrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~ 246 (402)
.+||+|++-... ...-|+-+. .+..+-+-+|.|.-..|=|.+ .+..--..+|++.
T Consensus 321 a~nitf~Ntag~-----------------~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~---~~~Rqyy~~C~I~ 376 (541)
T PLN02416 321 ARDITIENTAGP-----------------EKHQAVALRVNADLVALYRCTINGYQDTLYV---HSFRQFYRECDIY 376 (541)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEEcCccEEEEcceEecccchhcc---CCCceEEEeeEEe
Confidence 999999985321 123344443 468888899999887776654 1223344445444
No 39
>PLN02432 putative pectinesterase
Probab=94.24 E-value=0.8 Score=45.97 Aligned_cols=113 Identities=19% Similarity=0.315 Sum_probs=71.7
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCCceE-EeC--C------ceEEEeeeccEEEEee
Q 015685 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG--G------PCITIQYVTNIIIHGL 175 (402)
Q Consensus 112 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~--G------~gi~i~~a~NVIIrnL 175 (402)
|+.+||.. +..+++||=+.|+- ++.|.| .+|+||.|.+..-+ |.. + +.+. ..++|++.+||
T Consensus 25 TIq~Aida~p~~~~~~~~I~I~~G~Y--~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~-v~a~~f~a~nl 101 (293)
T PLN02432 25 KIQDAIDAVPSNNSQLVFIWVKPGIY--REKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLS-VLASDFVGRFL 101 (293)
T ss_pred CHHHHHhhccccCCceEEEEEeCcee--EEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEE-EECCCeEEEee
Confidence 68888853 22345555455654 455555 78999999986533 321 1 1122 36899999999
Q ss_pred EEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccEEEEeeeeecCCCCeeEeecCCeeEEEEcceeccc
Q 015685 176 NIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHH 248 (402)
Q Consensus 176 ~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H 248 (402)
+|++..+. .+-|+.+. .+..+-+.+|.|.-..|=|++ . ...--+.+|++..+
T Consensus 102 t~~Nt~g~------------------~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~-~--~gr~yf~~c~I~G~ 154 (293)
T PLN02432 102 TIQNTFGS------------------SGKAVALRVAGDRAAFYGCRILSYQDTLLD-D--TGRHYYRNCYIEGA 154 (293)
T ss_pred EEEeCCCC------------------CCceEEEEEcCCcEEEEcceEecccceeEE-C--CCCEEEEeCEEEec
Confidence 99985321 23345444 478899999999998888875 2 23445566666643
No 40
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=93.97 E-value=0.76 Score=49.91 Aligned_cols=103 Identities=17% Similarity=0.306 Sum_probs=66.3
Q ss_pred Cch---hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCCceEE-e------CCce-E---E-Eee
Q 015685 109 KPG---TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVHI-A------GGPC-I---T-IQY 166 (402)
Q Consensus 109 ~pG---tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I-~------~G~g-i---~-i~~ 166 (402)
|.| |+.+||.. +..|+|||=+.|+- ++.+.| .+|+||.|.|...+| . +|.+ . + ...
T Consensus 244 GsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v~ 321 (548)
T PLN02301 244 GSGKYKTVKEAVASAPDNSKTRYVIYVKKGTY--KENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATVAAV 321 (548)
T ss_pred CCCCcccHHHHHHhhhhcCCceEEEEEeCcee--eEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEEEEE
Confidence 555 78888854 33466777667775 355655 579999999875443 2 1221 0 1 136
Q ss_pred eccEEEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccEEEEeeeeecCCCCeeE
Q 015685 167 VTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 230 (402)
Q Consensus 167 a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~DgliD 230 (402)
+++++.+||.|++.... ...-|+-+. .+..+-+.+|.|.-..|=|.+
T Consensus 322 ~~~F~a~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~ 369 (548)
T PLN02301 322 GDGFIAQDIWFQNTAGP-----------------EKHQAVALRVSADQAVINRCRIDAYQDTLYA 369 (548)
T ss_pred CCceEEEeeEEEECCCC-----------------CCCceEEEEecCCcEEEEeeeeeecccccee
Confidence 89999999999984311 122344443 468889999999887765553
No 41
>PLN02665 pectinesterase family protein
Probab=93.78 E-value=9.6 Score=39.56 Aligned_cols=104 Identities=15% Similarity=0.192 Sum_probs=65.1
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCCce-EEeCC-----------ceEEEeeeccEEE
Q 015685 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASV-HIAGG-----------PCITIQYVTNIII 172 (402)
Q Consensus 112 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~-~I~~G-----------~gi~i~~a~NVII 172 (402)
|+.+||.. +..|+|||=+.|+-+ +.|.| .+++||.|.+... .|... +.+ ...+++++.
T Consensus 82 TIq~AIdaiP~~~~~r~vI~Ik~GvY~--EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv-~v~a~~F~a 158 (366)
T PLN02665 82 TITDAIKSIPAGNTQRVIIDIGPGEYN--EKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATL-IVESDYFMA 158 (366)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcEEE--EEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEE-EEECCCeEE
Confidence 78888854 233566666667654 55655 6789999997643 33211 111 246899999
Q ss_pred EeeEEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccEEEEeeeeecCCCCeeE
Q 015685 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 230 (402)
Q Consensus 173 rnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~DgliD 230 (402)
+||+|++..+.+.+ . ..+.-|+.+. .+..+-+.+|.|.-..|=|.+
T Consensus 159 ~nitf~Nta~~~~~----------~--~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~ 205 (366)
T PLN02665 159 ANIIIKNSAPRPDG----------K--RKGAQAVAMRISGDKAAFYNCRFIGFQDTLCD 205 (366)
T ss_pred EeeEEEeCCCCcCC----------C--CCCcceEEEEEcCCcEEEEcceeccccceeEe
Confidence 99999986442110 0 0122344443 367888999999887776664
No 42
>PLN02773 pectinesterase
Probab=93.77 E-value=1.3 Score=44.88 Aligned_cols=113 Identities=13% Similarity=0.167 Sum_probs=69.1
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCCceE-EeC----------------C------ce
Q 015685 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG----------------G------PC 161 (402)
Q Consensus 112 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~----------------G------~g 161 (402)
|+.+||.. +..+++||=+.|+-+ +.|.| .+|+||.|++..-+ |.. | ..
T Consensus 19 TIq~Aida~P~~~~~~~~I~Ik~G~Y~--E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~SaT 96 (317)
T PLN02773 19 TVQDAIDAVPLCNRCRTVIRVAPGVYR--QPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCGT 96 (317)
T ss_pred CHHHHHhhchhcCCceEEEEEeCceEE--EEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCceE
Confidence 68888853 223455555556543 55655 56899999876432 321 1 11
Q ss_pred EEEeeeccEEEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccEEEEeeeeecCCCCeeEeecCCeeEEE
Q 015685 162 ITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDAIHGSTAITI 240 (402)
Q Consensus 162 i~i~~a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~DgliDv~~gs~~VTI 240 (402)
+ ...++|++.+||+|++..+. ..+-|+.+. .+..+-+.+|.|.-..|=|.+- ...--+
T Consensus 97 v-~v~a~~f~a~nlT~~Nt~~~-----------------~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~---~gr~yf 155 (317)
T PLN02773 97 V-IVEGEDFIAENITFENSAPE-----------------GSGQAVAIRVTADRCAFYNCRFLGWQDTLYLH---YGKQYL 155 (317)
T ss_pred E-EEECCCeEEEeeEEEeCCCC-----------------CCCcEEEEEecCccEEEEccEeecccceeEeC---CCCEEE
Confidence 1 23689999999999985321 123444443 4688999999999888877751 123445
Q ss_pred Ecceecc
Q 015685 241 SNNFMTH 247 (402)
Q Consensus 241 Snn~f~~ 247 (402)
.+|+++.
T Consensus 156 ~~c~IeG 162 (317)
T PLN02773 156 RDCYIEG 162 (317)
T ss_pred EeeEEee
Confidence 5566553
No 43
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=93.76 E-value=0.65 Score=43.73 Aligned_cols=116 Identities=16% Similarity=0.213 Sum_probs=65.3
Q ss_pred eCCceEEEeeeccEEEEeeEEeecccCCCcccccCCCCCCCccccCCCe-EEEe-CCccEEEEeeeeecCCCCeeE----
Q 015685 157 AGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDG-VSIF-GGTHIWVDHCSLSNCDDGLVD---- 230 (402)
Q Consensus 157 ~~G~gi~i~~a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~Da-Isi~-gs~nVWIDHcs~s~~~DgliD---- 230 (402)
.++-+|.+.+++||+|.+.+|........ ....|+ +.+. ++++|=|-+|-|.......+-
T Consensus 73 ~~~Dai~i~~~~nVWIDH~sfs~~~~~~~--------------~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d 138 (200)
T PF00544_consen 73 SDGDAISIDNSSNVWIDHCSFSWGNFECN--------------SDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSD 138 (200)
T ss_dssp CS--SEEEESTEEEEEES-EEEETTS-GG--------------GSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCT
T ss_pred cCCCeEEEEecccEEEeccEEeccccccc--------------cccCCceEEEEeCCceEEEEchhccccccccccCCCC
Confidence 44667889999999999999998622110 012343 5554 577787777777764332221
Q ss_pred --eecCCeeEEEEcceeccc-CeeeeecCCCCccCCCcceEEEEeeeeCCCCCCCC--CC-CcEEEEEccee
Q 015685 231 --AIHGSTAITISNNFMTHH-DKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRI--PR-HGYFHVVNNDY 296 (402)
Q Consensus 231 --v~~gs~~VTISnn~f~~H-~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~--Pr-~G~~Hv~NN~y 296 (402)
.......||+.+|+|.++ .+..++... ++-+..|+|- +..+.. .+ .+++-+-||||
T Consensus 139 ~~~~~~~~~vT~hhN~f~~~~~R~P~~r~G---------~~Hv~NN~~~-~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 139 SNSTDRGLRVTFHHNYFANTNSRNPRVRFG---------YVHVYNNYYY-NWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp TCGGGTTEEEEEES-EEEEEEE-TTEECSC---------EEEEES-EEE-EECSESEEEETTEEEEEES-EE
T ss_pred CccccCCceEEEEeEEECchhhCCCccccc---------EEEEEEeeeE-CCCCEEEEccCCeEEEEECcCC
Confidence 122236999999999864 344444221 6788888883 333222 12 55788888886
No 44
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=93.62 E-value=1.2 Score=48.24 Aligned_cols=100 Identities=19% Similarity=0.222 Sum_probs=62.9
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCCce-EEeC------Cce----EE-EeeeccEEE
Q 015685 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASV-HIAG------GPC----IT-IQYVTNIII 172 (402)
Q Consensus 112 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~-~I~~------G~g----i~-i~~a~NVII 172 (402)
|+.+||.. +..+++|+=+.|+-+ +.+.| .+|+||.|.|..- .|.+ |.+ =+ ...+++++.
T Consensus 232 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v~a~~F~a 309 (530)
T PLN02933 232 TINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATVGVKGKGFIA 309 (530)
T ss_pred CHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceEEEEECCCEEE
Confidence 67777743 223455555556654 44555 6789999998653 3321 211 01 136899999
Q ss_pred EeeEEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccEEEEeeeeecCCCCeeE
Q 015685 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 230 (402)
Q Consensus 173 rnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~DgliD 230 (402)
+||+|++-.+. ...-|+-+. .+..+-+.+|.|.-..|=|.+
T Consensus 310 ~nitf~Ntag~-----------------~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~ 351 (530)
T PLN02933 310 KDISFVNYAGP-----------------AKHQAVALRSGSDHSAFYRCEFDGYQDTLYV 351 (530)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEEeEEEeccccccc
Confidence 99999984321 123455554 478899999999987776664
No 45
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=93.53 E-value=0.92 Score=49.16 Aligned_cols=113 Identities=15% Similarity=0.195 Sum_probs=70.1
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCCceE-EeC------Cce-----EEEeeeccEEE
Q 015685 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC-----ITIQYVTNIII 172 (402)
Q Consensus 112 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~------G~g-----i~i~~a~NVII 172 (402)
|+.+||.. +..|+|||=+.|+-+ +.+.| .+|+||.|.|..-+ |.+ |.+ -....+++++.
T Consensus 246 TIq~Av~a~p~~~~~r~vI~Vk~GvY~--E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v~~~~F~a 323 (537)
T PLN02506 246 TITEAINEAPNHSNRRYIIYVKKGVYK--ENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAVSGRGFIA 323 (537)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCeee--EEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEEEcCCeEE
Confidence 68888854 334666766677653 44444 68999999986543 331 211 01246899999
Q ss_pred EeeEEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccEEEEeeeeecCCCCeeEeecCCeeEEEEcceec
Q 015685 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMT 246 (402)
Q Consensus 173 rnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~ 246 (402)
+||.|++-... .+.-|+-+. .+.++-+.+|.|.-..|=|.+- +..--..+|++.
T Consensus 324 ~nit~~Ntag~-----------------~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~---~~rqyy~~C~I~ 378 (537)
T PLN02506 324 RDITFRNTAGP-----------------QNHQAVALRVDSDQSAFYRCSMEGYQDTLYAH---SLRQFYRECEIY 378 (537)
T ss_pred EeeEEEeCCCC-----------------CCCceEEEEecCCcEEEEcceeecccccceec---CCceEEEeeEEe
Confidence 99999984211 123344443 4788999999999887766641 223344555554
No 46
>PLN02314 pectinesterase
Probab=93.46 E-value=0.94 Score=49.58 Aligned_cols=100 Identities=20% Similarity=0.295 Sum_probs=64.8
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCCceE-EeC------Cce-E---E-EeeeccEEE
Q 015685 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC-I---T-IQYVTNIII 172 (402)
Q Consensus 112 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~------G~g-i---~-i~~a~NVII 172 (402)
|+.+||.. +..|+|||=+.|+-+ +.+.| ..|+|+.|.|..-+ |.+ |.. . + ...+++++.
T Consensus 292 TI~~Av~a~p~~~~~r~vI~ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~v~~~~F~a 369 (586)
T PLN02314 292 TINEAVASIPKKSKSRFVIYVKEGTYV--ENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFAAAGKGFIA 369 (586)
T ss_pred CHHHHHhhccccCCceEEEEEcCceEE--EEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEEEEcCCeEE
Confidence 78888854 334667776677753 44545 56899999986543 331 211 0 1 136899999
Q ss_pred EeeEEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccEEEEeeeeecCCCCeeE
Q 015685 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 230 (402)
Q Consensus 173 rnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~DgliD 230 (402)
|||+|++.... ...-|+-+. ++...-+.+|.|.-..|=|.+
T Consensus 370 ~~itf~Ntag~-----------------~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~ 411 (586)
T PLN02314 370 KDMGFINTAGA-----------------AKHQAVAFRSGSDMSVFYQCSFDAFQDTLYA 411 (586)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEecCCcEEEEeeEEEeccchhee
Confidence 99999985321 123455554 578889999999887665553
No 47
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=93.39 E-value=1.3 Score=48.51 Aligned_cols=100 Identities=16% Similarity=0.242 Sum_probs=64.5
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCCceE-EeC------CceE----E-EeeeccEEE
Q 015685 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPCI----T-IQYVTNIII 172 (402)
Q Consensus 112 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~------G~gi----~-i~~a~NVII 172 (402)
|+.+||.. +..|++|+=+.|+-+ +.+.| .+|+||.|.|..-+ |.+ |.+- + ...+++++.
T Consensus 299 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v~~~~F~a 376 (596)
T PLN02745 299 TISDALAAMPAKYEGRYVIYVKQGIYD--ETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATFVALGEGFMA 376 (596)
T ss_pred cHHHHHHhccccCCceEEEEEeCCeeE--EEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEEEEEcCCEEE
Confidence 78888854 234566666667654 44555 56899999987543 321 2110 1 136899999
Q ss_pred EeeEEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccEEEEeeeeecCCCCeeE
Q 015685 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 230 (402)
Q Consensus 173 rnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~DgliD 230 (402)
+||+|++.... ...-|+-+. .+..+-+.+|.|.-..|=|.+
T Consensus 377 ~nitf~Ntag~-----------------~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~ 418 (596)
T PLN02745 377 KSMGFRNTAGP-----------------EKHQAVAIRVQSDRSIFLNCRFEGYQDTLYA 418 (596)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEeeEEeeccccccc
Confidence 99999985311 123444443 478899999999987776654
No 48
>PLN02304 probable pectinesterase
Probab=93.29 E-value=1.8 Score=44.95 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=75.8
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCCceE-EeC--Cc----e-----EEEeeeccEEE
Q 015685 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG--GP----C-----ITIQYVTNIII 172 (402)
Q Consensus 112 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~--G~----g-----i~i~~a~NVII 172 (402)
|+.+||.. +..+++||=+.|+- .+.|.| .+|+||.|+|..-+ |.. .. + -....+++++.
T Consensus 89 TIQ~AIdavP~~~~~r~vI~Ik~GvY--~EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v~a~~F~a 166 (379)
T PLN02304 89 TVQSAVDAVGNFSQKRNVIWINSGIY--YEKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQVFASNFIA 166 (379)
T ss_pred CHHHHHhhCcccCCCcEEEEEeCeEe--EEEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEEECCCeEE
Confidence 78888854 23355566556654 356666 68999999987543 321 00 0 01235899999
Q ss_pred EeeEEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccEEEEeeeeecCCCCeeEeecCCeeEEEEcceeccc
Q 015685 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHH 248 (402)
Q Consensus 173 rnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H 248 (402)
+||+|++..+.. .+ | ..+.-|+.+. .+..+-+.+|.|.-..|=|.+- ...--+.+|++..+
T Consensus 167 ~nITf~Nta~~~------~~---g---~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~---~gR~Yf~~CyIeG~ 228 (379)
T PLN02304 167 KNISFMNVAPIP------KP---G---DVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDD---RGRHYFKDCYIQGS 228 (379)
T ss_pred EeeEEEecCCCC------CC---C---CCCccEEEEEecCCcEEEEeceEecccceeEeC---CCCEEEEeeEEccc
Confidence 999999864321 00 1 1233455554 4788999999999999988862 23445667777643
No 49
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=93.29 E-value=1.4 Score=48.31 Aligned_cols=101 Identities=19% Similarity=0.264 Sum_probs=65.0
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCCceE-EeCCce----E-E------EeeeccEEE
Q 015685 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAGGPC----I-T------IQYVTNIII 172 (402)
Q Consensus 112 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~G~g----i-~------i~~a~NVII 172 (402)
|+.+||.. +..|+|||=+.|+-+=+ .|.| .+|+||.|.|..-+ |.++.. . + ...+++++.
T Consensus 286 TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~-~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v~~~~F~a 364 (587)
T PLN02484 286 TISEAIKKAPEHSSRRTIIYVKAGRYEEN-NLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAATGAGFIA 364 (587)
T ss_pred cHHHHHHhccccCCCcEEEEEeCCEEEEE-EEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEEEcCCEEE
Confidence 78888854 33467777667776421 3555 67999999987543 433211 1 1 136899999
Q ss_pred EeeEEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccEEEEeeeeecCCCCeeE
Q 015685 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 230 (402)
Q Consensus 173 rnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~DgliD 230 (402)
|||+|++-.+. ...-|+-+. .+...-+.+|.|.-..|=|.+
T Consensus 365 ~~itf~Ntag~-----------------~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~ 406 (587)
T PLN02484 365 RDMTFENWAGP-----------------AKHQAVALRVGADHAVVYRCNIIGYQDTLYV 406 (587)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEecCCcEEEEeeeEeccCccccc
Confidence 99999985321 123455544 478888999999887665553
No 50
>PLN02916 pectinesterase family protein
Probab=93.20 E-value=1.5 Score=47.27 Aligned_cols=100 Identities=15% Similarity=0.146 Sum_probs=64.1
Q ss_pred hHHHHhhc-------CCCeEEEEccceEEEeCceeee---ccCeeEeccCCceE-Ee------CCce-E---E-Eeeecc
Q 015685 112 TLRYAVIQ-------DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IA------GGPC-I---T-IQYVTN 169 (402)
Q Consensus 112 tLR~av~~-------~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~------~G~g-i---~-i~~a~N 169 (402)
|+.+||.. +..|++||=+.|+-+ +.+.| .+|+||.|.|..-+ |. +|.. . + ...+++
T Consensus 201 TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v~~~~ 278 (502)
T PLN02916 201 TINQALAALSRMGKSRTNRVIIYVKAGVYN--EKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGVSGDG 278 (502)
T ss_pred CHHHHHHhcccccCCCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEEECCC
Confidence 78888843 234667776667654 45555 56899999987543 32 1211 0 1 136899
Q ss_pred EEEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccEEEEeeeeecCCCCeeE
Q 015685 170 IIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 230 (402)
Q Consensus 170 VIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~DgliD 230 (402)
++.|||+|++-.+. ...-|+-+. .+...-+.+|.|.-..|=|.+
T Consensus 279 F~A~nitf~Ntag~-----------------~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~ 323 (502)
T PLN02916 279 FWARDITFENTAGP-----------------HKHQAVALRVSSDLSVFYRCSFKGYQDTLFV 323 (502)
T ss_pred EEEEeeEEEeCCCC-----------------CCCceEEEEEcCCcEEEEeeeEeccCceeEe
Confidence 99999999985321 123344443 468888999999887776664
No 51
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=93.03 E-value=1.3 Score=48.15 Aligned_cols=99 Identities=19% Similarity=0.258 Sum_probs=63.9
Q ss_pred hHHHHhhc-----CCCeEEEEccceEEEeCceeee---ccCeeEeccCCceE-EeC----C-ceE------E-EeeeccE
Q 015685 112 TLRYAVIQ-----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG----G-PCI------T-IQYVTNI 170 (402)
Q Consensus 112 tLR~av~~-----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~----G-~gi------~-i~~a~NV 170 (402)
|+.+||.. ++-|.|||=+.|+-+ +.+.| ..|+||.|.|..-+ |.+ + .|+ + ...++++
T Consensus 255 TIq~Av~a~p~~~~~~r~vI~vk~GvY~--E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~saT~~v~~~~f 332 (553)
T PLN02708 255 TVQEAVNAAPDNNGDRKFVIRIKEGVYE--ETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVGVLGDGF 332 (553)
T ss_pred CHHHHHHhhhhccCCccEEEEEeCceEE--eeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceEEEEEEcCCe
Confidence 78888843 133566666677654 44544 67999999986543 331 1 121 1 1368999
Q ss_pred EEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccEEEEeeeeecCCCCee
Q 015685 171 IIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLV 229 (402)
Q Consensus 171 IIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~Dgli 229 (402)
+.+||+|++.... ...-|+-+. .+..+-+.+|.|.-..|=|.
T Consensus 333 ~a~~it~~Ntag~-----------------~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy 375 (553)
T PLN02708 333 MARDLTIQNTAGP-----------------DAHQAVAFRSDSDLSVIENCEFLGNQDTLY 375 (553)
T ss_pred EEEeeEEEcCCCC-----------------CCCceEEEEecCCcEEEEeeeeeeccccce
Confidence 9999999974211 123455554 47889999999988666554
No 52
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=92.89 E-value=1.5 Score=47.44 Aligned_cols=100 Identities=15% Similarity=0.194 Sum_probs=64.1
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCCceE-Ee------CCceE----E-EeeeccEEE
Q 015685 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IA------GGPCI----T-IQYVTNIII 172 (402)
Q Consensus 112 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~------~G~gi----~-i~~a~NVII 172 (402)
|+.+||.. +..+++||=+.|+-+ +.+.| .+|+||.|.|..-+ |. +|.+- + ...+++++.
T Consensus 220 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v~~~~F~a 297 (520)
T PLN02201 220 TIMDAVLAAPDYSTKRYVIYIKKGVYL--ENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFAVSGRGFIA 297 (520)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCceeE--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEEEEECCCeEE
Confidence 78888853 233556665567653 45555 56899999987533 32 12210 1 136899999
Q ss_pred EeeEEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccEEEEeeeeecCCCCeeE
Q 015685 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 230 (402)
Q Consensus 173 rnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~DgliD 230 (402)
+||+|++..+. ...-|+-+. .+...-+.+|.|.-..|=|.+
T Consensus 298 ~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~ 339 (520)
T PLN02201 298 RDITFQNTAGP-----------------EKHQAVALRSDSDLSVFYRCAMRGYQDTLYT 339 (520)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEeeeeeccCCeeEe
Confidence 99999985321 123445544 468889999999888776664
No 53
>PLN02634 probable pectinesterase
Probab=92.73 E-value=2.4 Score=43.87 Aligned_cols=119 Identities=14% Similarity=0.229 Sum_probs=72.0
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCCceEEe-----------CCceE-------EEee
Q 015685 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVHIA-----------GGPCI-------TIQY 166 (402)
Q Consensus 112 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I~-----------~G~gi-------~i~~ 166 (402)
|+.+||.. +..+++||=+.|+- .+.|.| .+|+||.|.|...+|. +|..+ ....
T Consensus 70 TIQaAIda~P~~~~~r~vI~Ik~GvY--~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V~ 147 (359)
T PLN02634 70 SVQDAVDSVPKNNTMSVTIKINAGFY--REKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTVY 147 (359)
T ss_pred CHHHHHhhCcccCCccEEEEEeCceE--EEEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEEE
Confidence 67778753 22345555455664 355555 6899999998765432 11111 1236
Q ss_pred eccEEEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccEEEEeeeeecCCCCeeEeecCCeeEEEEccee
Q 015685 167 VTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFM 245 (402)
Q Consensus 167 a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f 245 (402)
+++++.+||+|++..+.. . .| ..++-|+.+. .+..+-+.+|.|.-..|=|.+- ...--+.+|++
T Consensus 148 a~~F~a~niTf~Nta~~~------~---~g---~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~---~gR~yf~~CyI 212 (359)
T PLN02634 148 ANYFTARNISFKNTAPAP------M---PG---MQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDD---AGRHYFKECYI 212 (359)
T ss_pred CCCeEEEeCeEEeCCccC------C---CC---CCCCceEEEEecCCcEEEEEeEEecccceeeeC---CCCEEEEeeEE
Confidence 899999999999864321 0 01 1233444443 4677999999999988877752 23445556666
Q ss_pred cc
Q 015685 246 TH 247 (402)
Q Consensus 246 ~~ 247 (402)
..
T Consensus 213 eG 214 (359)
T PLN02634 213 EG 214 (359)
T ss_pred cc
Confidence 54
No 54
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=92.66 E-value=1.8 Score=46.92 Aligned_cols=98 Identities=15% Similarity=0.221 Sum_probs=64.1
Q ss_pred hHHHHhhc---CC----CeEEEEccceEEEeCceeee---ccCeeEeccCCceE-Ee------CCc------eEEEeeec
Q 015685 112 TLRYAVIQ---DE----PLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IA------GGP------CITIQYVT 168 (402)
Q Consensus 112 tLR~av~~---~~----P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~------~G~------gi~i~~a~ 168 (402)
|+.+||.. .. -|+|||=+.|+-+ +.|.| .+|+||.|.|..-+ |. +|. .+. ..++
T Consensus 237 TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~-v~~~ 313 (538)
T PLN03043 237 TITDAIAAAPNNSKPEDGYFVIYAREGYYE--EYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFA-VSGE 313 (538)
T ss_pred CHHHHHHhccccCCCCcceEEEEEcCeeeE--EEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEE-EECC
Confidence 78888853 11 2667777777764 45555 68999999987543 33 221 111 3679
Q ss_pred cEEEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccEEEEeeeeecCCCCee
Q 015685 169 NIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLV 229 (402)
Q Consensus 169 NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~Dgli 229 (402)
++|.+||.|++.... ...-|+-+. .+...-+.+|+|.-..|=|.
T Consensus 314 ~F~a~~it~~Ntag~-----------------~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy 358 (538)
T PLN03043 314 RFVAVDVTFRNTAGP-----------------EKHQAVALRNNADLSTFYRCSFEGYQDTLY 358 (538)
T ss_pred CEEEEeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEeeEEeccCcccc
Confidence 999999999984311 123455554 46778899999988766544
No 55
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=92.60 E-value=1.8 Score=46.65 Aligned_cols=100 Identities=18% Similarity=0.270 Sum_probs=64.5
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCCceE-EeC------Cce-E---E-EeeeccEEE
Q 015685 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC-I---T-IQYVTNIII 172 (402)
Q Consensus 112 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~------G~g-i---~-i~~a~NVII 172 (402)
|+.+||.+ +..+++||=+.|+-+ +.|.| .+|+||.|.|..-+ |.+ |.. . + ...++++|.
T Consensus 211 TIq~AI~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv~v~g~gF~A 288 (509)
T PLN02488 211 TVNAAIAAAPEHSRKRFVIYIKTGVYD--EIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATVASNGDGFIG 288 (509)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCeeE--EEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEEEEEcCCeEE
Confidence 78888854 233566665567553 55555 67999999987543 332 111 0 1 135899999
Q ss_pred EeeEEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccEEEEeeeeecCCCCeeE
Q 015685 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 230 (402)
Q Consensus 173 rnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~DgliD 230 (402)
+||+|++.... ..+-|+-+. .+...-+.+|+|.-..|=|.+
T Consensus 289 ~nitf~Ntag~-----------------~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~ 330 (509)
T PLN02488 289 IDMCFRNTAGP-----------------AKGPAVALRVSGDMSVIYRCRIEGYQDALYP 330 (509)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEecCCcEEEEcceeeccCcceee
Confidence 99999984311 134566555 578899999999887665553
No 56
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=92.22 E-value=1.8 Score=46.92 Aligned_cols=113 Identities=18% Similarity=0.229 Sum_probs=70.9
Q ss_pred hHHHHhhc-C-----CCeEEEEccceEEEeCceeee---ccCeeEeccCCce-EEeC------CceE----E-EeeeccE
Q 015685 112 TLRYAVIQ-D-----EPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASV-HIAG------GPCI----T-IQYVTNI 170 (402)
Q Consensus 112 tLR~av~~-~-----~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~-~I~~------G~gi----~-i~~a~NV 170 (402)
|+.+||.. + ..|++|+=+.|+-+ +.+.| .+|+|+.|.|..- .|.+ |.+- + ...++++
T Consensus 237 TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~SaT~~v~~~~F 314 (539)
T PLN02995 237 TVQAAIDVAGRRKVTSGRFVIYVKRGIYQ--ENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSATAGIEGLHF 314 (539)
T ss_pred CHHHHHHhcccccCCCceEEEEEeCCEeE--EEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceEEEEEECCCe
Confidence 78888853 1 23566665566653 44555 6799999998753 3432 1110 1 1368999
Q ss_pred EEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccEEEEeeeeecCCCCeeEeecCCeeEEEEcceec
Q 015685 171 IIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMT 246 (402)
Q Consensus 171 IIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~ 246 (402)
+.+||+|++.... ..+-|+-+. .+....+.+|.|.-..|=|.+- +..--..+|++.
T Consensus 315 ~a~nitf~Ntag~-----------------~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~---~~Rqyy~~C~I~ 371 (539)
T PLN02995 315 IAKGITFRNTAGP-----------------AKGQAVALRSSSDLSIFYKCSIEGYQDTLMVH---SQRQFYRECYIY 371 (539)
T ss_pred EEEeeEEEeCCCC-----------------CCCceEEEEEcCCceeEEcceEecccchhccC---CCceEEEeeEEe
Confidence 9999999984311 134555554 4788999999999888877641 223344555554
No 57
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=92.02 E-value=1.9 Score=47.93 Aligned_cols=165 Identities=14% Similarity=0.150 Sum_probs=97.2
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCCceE-Ee------CCce-E---E-EeeeccEEE
Q 015685 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IA------GGPC-I---T-IQYVTNIII 172 (402)
Q Consensus 112 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~------~G~g-i---~-i~~a~NVII 172 (402)
|+.+||.. +..|+||+=+.|+- ++.+.| ..|+||.|.|...+ |. +|.+ . + ...+++++.
T Consensus 264 TIq~Av~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~~v~g~~F~a 341 (670)
T PLN02217 264 TINEALNFVPKKKNTTFVVHIKAGIY--KEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVAIVGDHFIA 341 (670)
T ss_pred CHHHHHHhccccCCceEEEEEeCCce--EEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEEEEECCCeEE
Confidence 78888854 33456666566654 345555 46889999987544 32 1211 0 1 136899999
Q ss_pred EeeEEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccEEEEeeeeecCCC-----------------CeeEeecC
Q 015685 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDD-----------------GLVDAIHG 234 (402)
Q Consensus 173 rnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~D-----------------gliDv~~g 234 (402)
|||+|++-... ...-|+-+. .+...-+.+|.|.-..| |.+|.+-|
T Consensus 342 ~nitf~Ntag~-----------------~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG 404 (670)
T PLN02217 342 KNIGFENTAGA-----------------IKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLFG 404 (670)
T ss_pred EeeEEEeCCCC-----------------CCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEec
Confidence 99999985321 233455554 47888888888876544 55677777
Q ss_pred CeeEEEEcceecccC-----eeeeecCCCCccCCCcceEEEEeeeeCCCC-------------CCCCCC-CcEEEEEcce
Q 015685 235 STAITISNNFMTHHD-----KVMLLGHSDTYTQDKNMQVTIAFNHFGEGL-------------VQRIPR-HGYFHVVNND 295 (402)
Q Consensus 235 s~~VTISnn~f~~H~-----k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~-------------~~R~Pr-~G~~Hv~NN~ 295 (402)
.-..-+++|.|.--. +..+-=++.. ..+...-..|+++.+. .. -+|--+ +..+-+.|.+
T Consensus 405 ~a~avfq~C~I~~r~~~~~~~~~ITAqgr~-~~~~~tGfvf~~C~i~-~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~t~ 482 (670)
T PLN02217 405 DAAAVFQNCTLLVRKPLLNQACPITAHGRK-DPRESTGFVLQGCTIV-GEPDYLAVKETSKAYLGRPWKEYSRTIIMNTF 482 (670)
T ss_pred CceEEEEccEEEEccCCCCCceeEecCCCC-CCCCCceEEEEeeEEe-cCccccccccccceeeccCCCCCceEEEEecc
Confidence 777788888885311 1111101110 0122346778888773 32 134323 5667777777
Q ss_pred ec
Q 015685 296 YT 297 (402)
Q Consensus 296 y~ 297 (402)
+.
T Consensus 483 l~ 484 (670)
T PLN02217 483 IP 484 (670)
T ss_pred cC
Confidence 63
No 58
>PLN02497 probable pectinesterase
Probab=91.83 E-value=3.4 Score=42.26 Aligned_cols=120 Identities=14% Similarity=0.204 Sum_probs=72.9
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCCceE-Ee--CCc------eEEEeeeccEEEEee
Q 015685 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IA--GGP------CITIQYVTNIIIHGL 175 (402)
Q Consensus 112 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~--~G~------gi~i~~a~NVIIrnL 175 (402)
|+.+||.. +..+++|+=+.|+- ++.|.| .+++||.|+|...+ |. ++. .+. ..+++++.+||
T Consensus 46 TIq~AIdavP~~~~~~~~I~Ik~G~Y--~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~-v~a~~f~a~nl 122 (331)
T PLN02497 46 TIQSAIDSVPSNNKHWFCINVKAGLY--REKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFS-TLADNTVVKSI 122 (331)
T ss_pred CHHHHHhhccccCCceEEEEEeCcEE--EEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEE-EecCCeEEEcc
Confidence 67788743 33345555555655 345555 68999999987432 32 111 122 36899999999
Q ss_pred EEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccEEEEeeeeecCCCCeeEeecCCeeEEEEcceecc
Q 015685 176 NIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTH 247 (402)
Q Consensus 176 ~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~ 247 (402)
+|++..+... .+. ...+.-|+.+. .+..+-+.+|.|.-..|=|.+- ...--+.+|++..
T Consensus 123 T~~Nt~~~~~---------~~~-~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~IeG 182 (331)
T PLN02497 123 TFANSYNFPS---------KGN-KNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDS---DGRHYFKRCTIQG 182 (331)
T ss_pred EEEeCCCCcc---------ccC-CCCCcceEEEEecCCcEEEEeeEEeccccceeeC---CCcEEEEeCEEEe
Confidence 9998542100 000 00123455554 4788999999999999988752 2344556666654
No 59
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=91.63 E-value=2.2 Score=46.86 Aligned_cols=116 Identities=20% Similarity=0.288 Sum_probs=72.7
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCCceE-EeC------Cce-E---E-EeeeccEEE
Q 015685 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC-I---T-IQYVTNIII 172 (402)
Q Consensus 112 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~------G~g-i---~-i~~a~NVII 172 (402)
|+.+||.. +..|+|||=+.|+-+ +.+.| .+|+||.|.|..-+ |.+ |.. . + ...+++++.
T Consensus 289 TI~~Av~a~p~~~~~r~vI~ik~GvY~--E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~v~~~~F~a 366 (587)
T PLN02313 289 TVAAAVAAAPEKSNKRFVIHIKAGVYR--ENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVAAVGERFLA 366 (587)
T ss_pred cHHHHHHhccccCCceEEEEEeCceeE--EEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEEEECCCeEE
Confidence 78888854 334666666667543 45555 56899999987543 321 211 0 1 135899999
Q ss_pred EeeEEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccEEEEeeeeecCCC-----------------CeeEeecC
Q 015685 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDD-----------------GLVDAIHG 234 (402)
Q Consensus 173 rnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~D-----------------gliDv~~g 234 (402)
|||.|++-... ...-|+-+. ++...-+-+|+|.-..| |.+|.+-|
T Consensus 367 ~~itf~Ntag~-----------------~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIFG 429 (587)
T PLN02313 367 RDITFQNTAGP-----------------SKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFG 429 (587)
T ss_pred EeeEEEeCCCC-----------------CCCceEEEEecCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceecc
Confidence 99999985321 123444443 47888899999887555 44555555
Q ss_pred CeeEEEEcceec
Q 015685 235 STAITISNNFMT 246 (402)
Q Consensus 235 s~~VTISnn~f~ 246 (402)
.-.+-+++|.|.
T Consensus 430 ~a~avfq~c~i~ 441 (587)
T PLN02313 430 NAAAVLQDCDIN 441 (587)
T ss_pred ceeEEEEccEEE
Confidence 556666666665
No 60
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=91.51 E-value=3.1 Score=45.49 Aligned_cols=100 Identities=15% Similarity=0.220 Sum_probs=64.1
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCCce-EEeC------C-ceE----E-EeeeccEE
Q 015685 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASV-HIAG------G-PCI----T-IQYVTNII 171 (402)
Q Consensus 112 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~-~I~~------G-~gi----~-i~~a~NVI 171 (402)
|+.+||.. +..|++|+=+.|+-+ +.+.| .+|+||.|.|..- .|.+ | .+- + ...+++++
T Consensus 273 TIq~Av~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT~~v~~~~F~ 350 (572)
T PLN02990 273 TINEALNAVPKANQKPFVIYIKQGVYN--EKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTATVAINGDHFT 350 (572)
T ss_pred CHHHHHhhCcccCCceEEEEEeCceeE--EEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeEEEEEcCCEE
Confidence 78888854 233566666667554 45555 5799999998643 3431 1 110 1 13689999
Q ss_pred EEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccEEEEeeeeecCCCCeeE
Q 015685 172 IHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 230 (402)
Q Consensus 172 IrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~DgliD 230 (402)
.|||+|++..+. ...-|+-+. .+...-+.+|.|.-..|=|.+
T Consensus 351 a~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~ 393 (572)
T PLN02990 351 AKNIGFENTAGP-----------------EGHQAVALRVSADYAVFYNCQIDGYQDTLYV 393 (572)
T ss_pred EEeeEEEeCCCC-----------------CCCceEEEEEcCCcEEEEeeeEecccchhcc
Confidence 999999985311 234555554 578889999999876665543
No 61
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=91.07 E-value=2.6 Score=46.09 Aligned_cols=100 Identities=15% Similarity=0.220 Sum_probs=63.3
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCCceE-Ee------CCc-eE---E-EeeeccEEE
Q 015685 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IA------GGP-CI---T-IQYVTNIII 172 (402)
Q Consensus 112 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~------~G~-gi---~-i~~a~NVII 172 (402)
|+.+||.. +.-|+|||=+.|+-+ +.+.| ..|+||.|.|..-+ |. +|. .. + ...+++++.
T Consensus 272 tI~~Av~a~p~~~~~~~vI~ik~GvY~--E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v~~~~f~a 349 (565)
T PLN02468 272 TISEALKDVPEKSEKRTIIYVKKGVYF--ENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAVFGKGFMA 349 (565)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCceE--EEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeEECCCeEE
Confidence 77888854 333556665667653 45555 56899999987543 33 121 10 1 135799999
Q ss_pred EeeEEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccEEEEeeeeecCCCCeeE
Q 015685 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 230 (402)
Q Consensus 173 rnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~DgliD 230 (402)
|||.|++.... ...-|+-+. .+..+-+.+|+|.-..|=|.+
T Consensus 350 ~~itf~Ntag~-----------------~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~ 391 (565)
T PLN02468 350 RDMGFRNTAGP-----------------IKHQAVALMSSADLSVFYRCTMDAFQDTLYA 391 (565)
T ss_pred EEEEEEeCCCC-----------------CCCceEEEEEcCCcEEEEEeEEEeccchhcc
Confidence 99999984311 123455554 578899999999887765553
No 62
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=90.93 E-value=3.2 Score=45.34 Aligned_cols=100 Identities=17% Similarity=0.238 Sum_probs=63.5
Q ss_pred hHHHHhhc-------CCCeEEEEccceEEEeCceeee---ccCeeEeccCCceE-Ee------CCceE----E-Eeeecc
Q 015685 112 TLRYAVIQ-------DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IA------GGPCI----T-IQYVTN 169 (402)
Q Consensus 112 tLR~av~~-------~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~------~G~gi----~-i~~a~N 169 (402)
|+.+||.. +.-+++|+=+.|+-+ +.|.| .+|+||.|.|..-+ |. +|.+- + ...+++
T Consensus 264 TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SaT~~v~~~~ 341 (566)
T PLN02713 264 TINDAVAAAPNNTDGSNGYFVIYVTAGVYE--EYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAVVGQN 341 (566)
T ss_pred CHHHHHHhhhcccCCCCceEEEEEcCcEEE--EEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccceeEEEECCC
Confidence 78888853 122566666667764 45555 67899999986433 43 12210 1 236799
Q ss_pred EEEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccEEEEeeeeecCCCCeeE
Q 015685 170 IIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 230 (402)
Q Consensus 170 VIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~DgliD 230 (402)
++.+||+|++.... ...-|+-+. .+...-+.+|.|.-..|=|.+
T Consensus 342 F~a~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~ 386 (566)
T PLN02713 342 FVAVNITFRNTAGP-----------------AKHQAVALRSGADLSTFYSCSFEAYQDTLYT 386 (566)
T ss_pred eEEEeeEEEeCCCC-----------------CCCceEEEEecCCcEEEEeeeeccCCcceEE
Confidence 99999999985321 123455444 567888899998887775553
No 63
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=90.78 E-value=3.7 Score=42.21 Aligned_cols=41 Identities=22% Similarity=0.524 Sum_probs=24.6
Q ss_pred ceeeeccCeeEeccCCceEEe-C--CceEEEeeeccEEEEeeEEee
Q 015685 137 EELIMNSFKTIDGRGASVHIA-G--GPCITIQYVTNIIIHGLNIHD 179 (402)
Q Consensus 137 ~~L~v~snkTI~G~ga~~~I~-~--G~gi~i~~a~NVIIrnL~i~~ 179 (402)
..++|+.-+|+-|.-.. .+. + |--++ -.+-++||++|++|+
T Consensus 45 g~~vInr~l~l~ge~ga-~l~g~g~G~~vt-v~aP~~~v~Gl~vr~ 88 (408)
T COG3420 45 GNFVINRALTLRGENGA-VLDGGGKGSYVT-VAAPDVIVEGLTVRG 88 (408)
T ss_pred ccEEEccceeecccccc-EEecCCcccEEE-EeCCCceeeeEEEec
Confidence 44555666666665222 222 2 32333 368999999999995
No 64
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=90.69 E-value=2.4 Score=42.50 Aligned_cols=123 Identities=15% Similarity=0.255 Sum_probs=69.6
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCCceE-EeCC------------ceEEEeeeccEE
Q 015685 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAGG------------PCITIQYVTNII 171 (402)
Q Consensus 112 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~G------------~gi~i~~a~NVI 171 (402)
|+.+||.. +..+++||=..|+-+ +.|.| .+++||.|.+..-+ |.+. ..+. ..+++++
T Consensus 14 TIq~Aida~p~~~~~~~~I~I~~G~Y~--E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~-v~a~~f~ 90 (298)
T PF01095_consen 14 TIQAAIDAAPDNNTSRYTIFIKPGTYR--EKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFS-VNADDFT 90 (298)
T ss_dssp SHHHHHHHS-SSSSS-EEEEE-SEEEE----EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEE-E-STT-E
T ss_pred CHHHHHHhchhcCCceEEEEEeCeeEc--cccEeccccceEEEEecCCCceEEEEecccccccccccccccc-cccccee
Confidence 68888864 334566776677665 55666 36999999987543 3311 1122 3589999
Q ss_pred EEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEeCCccEEEEeeeeecCCCCeeEeecCCeeEEEEcceecccCee
Q 015685 172 IHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKV 251 (402)
Q Consensus 172 IrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H~k~ 251 (402)
.+||+|++.... .....-||.+ .+.++.+.+|.|.-..|=|.. . ....-+.+|++..+- =
T Consensus 91 ~~nit~~Nt~g~---------------~~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~-~--~~r~y~~~c~IeG~v-D 150 (298)
T PF01095_consen 91 AENITFENTAGP---------------SGGQAVALRV-SGDRAAFYNCRFLGYQDTLYA-N--GGRQYFKNCYIEGNV-D 150 (298)
T ss_dssp EEEEEEEEHCSG---------------SG----SEEE-T-TSEEEEEEEEE-STT-EEE----SSEEEEES-EEEESE-E
T ss_pred eeeeEEecCCCC---------------cccceeeeee-cCCcEEEEEeEEccccceeee-c--cceeEEEeeEEEecC-c
Confidence 999999984211 0123456666 468899999999999998875 2 335666788877432 1
Q ss_pred eeecCC
Q 015685 252 MLLGHS 257 (402)
Q Consensus 252 ~LiG~s 257 (402)
.++|..
T Consensus 151 FIfG~~ 156 (298)
T PF01095_consen 151 FIFGNG 156 (298)
T ss_dssp EEEESS
T ss_pred EEECCe
Confidence 344543
No 65
>PLN02671 pectinesterase
Probab=89.54 E-value=9.4 Score=39.53 Aligned_cols=119 Identities=13% Similarity=0.148 Sum_probs=71.4
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCceeee---ccCeeEeccCC---ceEEeC----------CceE-------EE
Q 015685 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGA---SVHIAG----------GPCI-------TI 164 (402)
Q Consensus 112 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga---~~~I~~----------G~gi-------~i 164 (402)
|+.+||.. +..+++||=+.|+- .+.|.| .+++||.|.|. +..|.. |..+ ..
T Consensus 73 TIQ~AIdavP~~~~~~~~I~Ik~GvY--~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv~ 150 (359)
T PLN02671 73 TVQGAVDMVPDYNSQRVKIYILPGIY--REKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASVT 150 (359)
T ss_pred CHHHHHHhchhcCCccEEEEEeCceE--EEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEEE
Confidence 67788843 22244555455654 355655 78999999874 344541 1111 12
Q ss_pred eeeccEEEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEeCCccEEEEeeeeecCCCCeeEeecCCeeEEEEcce
Q 015685 165 QYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNF 244 (402)
Q Consensus 165 ~~a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~ 244 (402)
..+++++.+||+|++..+... +. .....-|+.+ .+.++-+.+|.|.-..|=|++- ...--+.+|+
T Consensus 151 v~a~~F~a~nitfeNt~~~~~----------g~-~~~QAVALrv-~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~Cy 215 (359)
T PLN02671 151 IESDYFCATGITFENTVVAEP----------GG-QGMQAVALRI-SGDKAFFYKVRVLGAQDTLLDE---TGSHYFYQCY 215 (359)
T ss_pred EECCceEEEeeEEEcCCCCCC----------CC-CCccEEEEEE-cCccEEEEcceEeccccccEeC---CCcEEEEecE
Confidence 367999999999998532110 00 0012334444 4688999999999988888762 2234556666
Q ss_pred ecc
Q 015685 245 MTH 247 (402)
Q Consensus 245 f~~ 247 (402)
+..
T Consensus 216 IeG 218 (359)
T PLN02671 216 IQG 218 (359)
T ss_pred EEE
Confidence 664
No 66
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=88.25 E-value=2 Score=46.71 Aligned_cols=133 Identities=17% Similarity=0.211 Sum_probs=83.9
Q ss_pred CCCeEEEEccceEEEeCc------ee-----eeccCeeEeccCCce-EEeCCceEEEeeeccEEEEeeEEeecccCCCcc
Q 015685 120 DEPLWIIFARDMTIRLKE------EL-----IMNSFKTIDGRGASV-HIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAM 187 (402)
Q Consensus 120 ~~P~~IvF~~~g~I~L~~------~L-----~v~snkTI~G~ga~~-~I~~G~gi~i~~a~NVIIrnL~i~~~~~~~~~~ 187 (402)
..|+.|.|...-.+.+.. ++ .--+|+||.+..-+. ++.+-.||.+..++||.|.+.+|.-
T Consensus 236 ~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fdt-------- 307 (542)
T COG5434 236 VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFDT-------- 307 (542)
T ss_pred cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCCCCCccccccceeEEEeccEEec--------
Confidence 578999998876666532 11 113455555442210 0001226778889999999999963
Q ss_pred cccCCCCCCCccccCCCeEEEe------------CCccEEEEeeeeecCCCCeeEee---cCCeeEEEEcceecccCeee
Q 015685 188 VRDSPRHFGWRTVSDGDGVSIF------------GGTHIWVDHCSLSNCDDGLVDAI---HGSTAITISNNFMTHHDKVM 252 (402)
Q Consensus 188 ir~s~~~~g~~~~~d~DaIsi~------------gs~nVWIDHcs~s~~~DgliDv~---~gs~~VTISnn~f~~H~k~~ 252 (402)
..|+|.+. -+++|||-||.|+.++-+++.-. .+-.+|++-+|.|.+-+.+.
T Consensus 308 --------------gDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GL 373 (542)
T COG5434 308 --------------GDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGL 373 (542)
T ss_pred --------------CCceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCccee
Confidence 23333332 15889999999999888887632 24579999999999988887
Q ss_pred eecCCCCccCCCcceEEEEeeee
Q 015685 253 LLGHSDTYTQDKNMQVTIAFNHF 275 (402)
Q Consensus 253 LiG~sd~~~~d~~~~vTi~~N~f 275 (402)
.|...+... -...+++|.-|..
T Consensus 374 Rikt~~~~g-G~v~nI~~~~~~~ 395 (542)
T COG5434 374 RIKTNDGRG-GGVRNIVFEDNKM 395 (542)
T ss_pred eeeeecccc-eeEEEEEEecccc
Confidence 776554322 1223455554443
No 67
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=86.95 E-value=14 Score=39.07 Aligned_cols=104 Identities=15% Similarity=0.154 Sum_probs=64.8
Q ss_pred hHHHHhhc-----CCCeEEEEccceEEEeCceeee---ccCeeEeccCC---ceEEeCC---------------------
Q 015685 112 TLRYAVIQ-----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGA---SVHIAGG--------------------- 159 (402)
Q Consensus 112 tLR~av~~-----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga---~~~I~~G--------------------- 159 (402)
|+.+||.. +..+++||=+.|+-+ +.|.| .+|+||.|.|. ...|...
T Consensus 96 TIQaAIdAa~~~~~~~r~~I~Ik~GvY~--EkV~Ip~~kp~ItL~G~G~~~~~TvIt~~~~~~~~~~~~~~~~~~~g~~~ 173 (422)
T PRK10531 96 TVQAAVDAAIAKRTNKRQYIAVMPGTYQ--GTVYVPAAAPPITLYGTGEKPIDVKIGLALDGEMSPADWRANVNPRGKYM 173 (422)
T ss_pred CHHHHHhhccccCCCceEEEEEeCceeE--EEEEeCCCCceEEEEecCCCCCceEEEecCcccccccccccccccccccc
Confidence 78888863 223566665566553 45555 68999999763 2445421
Q ss_pred -----------------ceE-------EEeeeccEEEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccE
Q 015685 160 -----------------PCI-------TIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHI 214 (402)
Q Consensus 160 -----------------~gi-------~i~~a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nV 214 (402)
..+ ....+++++.+||+|++..+.+. + ....-|+-+. .+..+
T Consensus 174 ~~~p~~y~~d~~~~~~~~~~gT~~SATv~v~ad~F~a~NLTf~Ntag~~~----------~---~~~~QAVALrv~GDra 240 (422)
T PRK10531 174 PGKPAWYMYDSCQSKRAATIGTLCSAVFWSQNNGLQLQNLTIENTLGDSV----------D---AGNHPAVALRTDGDKV 240 (422)
T ss_pred ccccccccccccccccCCCcCceeeEEEEEECCCEEEEeeEEEeCCCCCC----------C---CCcceeEEEEEcCCcE
Confidence 001 11368999999999998543100 0 0123444444 46889
Q ss_pred EEEeeeeecCCCCeeE
Q 015685 215 WVDHCSLSNCDDGLVD 230 (402)
Q Consensus 215 WIDHcs~s~~~DgliD 230 (402)
-+.+|.|.-..|=|..
T Consensus 241 ~fy~C~flG~QDTLy~ 256 (422)
T PRK10531 241 QIENVNILGRQDTFFV 256 (422)
T ss_pred EEEeeEEecccceeee
Confidence 9999999988887775
No 68
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes.; GO: 0030570 pectate lyase activity
Probab=86.49 E-value=0.44 Score=36.51 Aligned_cols=19 Identities=42% Similarity=0.728 Sum_probs=16.1
Q ss_pred cCCCCChhhHHHHhhhhhh
Q 015685 23 ASAVPDPELVVHEVHKSIN 41 (402)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~ 41 (402)
..-+|||++|+++||+.|+
T Consensus 22 ~aY~pdP~~Vt~~FN~~V~ 40 (56)
T PF04431_consen 22 AAYVPDPENVTNEFNRHVH 40 (56)
T ss_pred HhcCCCHHHHHHHHHHHHH
Confidence 3448999999999999875
No 69
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=84.81 E-value=7.2 Score=39.64 Aligned_cols=119 Identities=13% Similarity=0.149 Sum_probs=73.3
Q ss_pred CCCeEEEeCCccEEEEeeeeecCC-----CCeeEeecCCeeEEEEcceecccCeeeeecCCCCcc--CCCcceEEEEeee
Q 015685 202 DGDGVSIFGGTHIWVDHCSLSNCD-----DGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYT--QDKNMQVTIAFNH 274 (402)
Q Consensus 202 d~DaIsi~gs~nVWIDHcs~s~~~-----DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~--~d~~~~vTi~~N~ 274 (402)
-+-++.|..+.||+|-..+|.... +-.|.+..++.+|=|-+|-|..|....=--|.|... ....-.|||-+|+
T Consensus 115 ~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~ 194 (345)
T COG3866 115 VGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNK 194 (345)
T ss_pred EeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeee
Confidence 356788888999999999999876 345666678889999999998765431111222211 1123579999999
Q ss_pred eCCCCCC--------CCCCCc--EEEEEcceecCCcceeeccCC-CceeeeecceEeCC
Q 015685 275 FGEGLVQ--------RIPRHG--YFHVVNNDYTHWEMYAIGGSA-NPTINSQGNRFAAP 322 (402)
Q Consensus 275 f~~~~~~--------R~Pr~G--~~Hv~NN~y~~w~~yaigg~~-~~~i~~egN~F~~~ 322 (402)
|.++-.. -.+.-| .+-+-+|+|.|--. -+-+. -..+-+-+|||+.-
T Consensus 195 fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~q--R~PriRfG~vHvyNNYy~~~ 251 (345)
T COG3866 195 FHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQ--RGPRIRFGMVHVYNNYYEGN 251 (345)
T ss_pred eecCCeeeeeccCCcccccCCceeEEEeccccccccc--cCCceEeeEEEEeccccccC
Confidence 9654221 112123 35577888887421 00000 12356788999833
No 70
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=81.94 E-value=5.4 Score=42.12 Aligned_cols=113 Identities=21% Similarity=0.253 Sum_probs=52.1
Q ss_pred CCCeEEEeC------CccEEEEeeeeecC--CCCeeEeecCCeeEEEEcceecccCeeeeecCCCCccCCCcceEEEEee
Q 015685 202 DGDGVSIFG------GTHIWVDHCSLSNC--DDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFN 273 (402)
Q Consensus 202 d~DaIsi~g------s~nVWIDHcs~s~~--~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTi~~N 273 (402)
++.+|+|-. .++.-|.|+-|..| .-|.|+++ |..-||.+|.|.+..=.+-+=|.. ..|+..|
T Consensus 183 ggEtIRiG~S~~S~~~s~t~Ve~NlFe~cdGE~EIISvK--S~~N~ir~Ntf~es~G~ltlRHGn--------~n~V~gN 252 (425)
T PF14592_consen 183 GGETIRIGTSHSSMSDSNTTVENNLFERCDGEVEIISVK--SSDNTIRNNTFRESQGSLTLRHGN--------RNTVEGN 252 (425)
T ss_dssp ---SEEE-SSTT-B-----EEES-EEEEE-SSSEEEEEE--SBT-EEES-EEES-SSEEEEEE-S--------S-EEES-
T ss_pred CceeEEEecccccccccceeeecchhhhcCCceeEEEee--cCCceEeccEEEeccceEEEecCC--------CceEecc
Confidence 456666632 36677777777765 34456543 556678888887765444333332 5688889
Q ss_pred eeCCCCCCC--CC--C-CcEEE-EEcceecCCc----------ceeeccCC------CceeeeecceEeCCCCC
Q 015685 274 HFGEGLVQR--IP--R-HGYFH-VVNNDYTHWE----------MYAIGGSA------NPTINSQGNRFAAPDRA 325 (402)
Q Consensus 274 ~f~~~~~~R--~P--r-~G~~H-v~NN~y~~w~----------~yaigg~~------~~~i~~egN~F~~~~~~ 325 (402)
+|- +...+ .+ | .|.-| |+|||+++-. |+++-.+. -..+.+++|-|++...+
T Consensus 253 ~Fi-Gng~~~~tGGIRIi~~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~~~ 325 (425)
T PF14592_consen 253 VFI-GNGVKEGTGGIRIIGEGHTIYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANNTFINCKSP 325 (425)
T ss_dssp EEE-E-SSSS-B--EEE-SBS-EEES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-EEES-SEE
T ss_pred EEe-cCCCcCCCCceEEecCCcEEEcceeeccccceeecceeeccCCCCCCcccccccceeEEecceEEccCCc
Confidence 984 33322 11 2 44444 8899997643 22221111 12478899999988743
No 71
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=73.08 E-value=46 Score=31.65 Aligned_cols=86 Identities=23% Similarity=0.243 Sum_probs=53.6
Q ss_pred eeEEEEcceecccCe--eeeecCCCCccCCCcceEEEEeeeeCCCCCCCCCC----Cc-------EEEEEcceecCCc--
Q 015685 236 TAITISNNFMTHHDK--VMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPR----HG-------YFHVVNNDYTHWE-- 300 (402)
Q Consensus 236 ~~VTISnn~f~~H~k--~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~Pr----~G-------~~Hv~NN~y~~w~-- 300 (402)
++|.|=+|.+.+-.- .-|+|...++..+....|.||||.|.. + ...|. .| ..-+.||+|+.-.
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~-t-Gtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~a 79 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYD-T-GTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHA 79 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeec-C-CcCCCCceeeeEEeccccccEEEeeeecccccc
Confidence 467777888876442 336687666666666689999999953 3 34444 33 2358999997643
Q ss_pred ----ceeec----cCCCceeeeecceEeCCC
Q 015685 301 ----MYAIG----GSANPTINSQGNRFAAPD 323 (402)
Q Consensus 301 ----~yaig----g~~~~~i~~egN~F~~~~ 323 (402)
||..+ ...+-+..+.+|.+.+..
T Consensus 80 ai~~~y~~~~~sp~gsgyttivRNNII~NT~ 110 (198)
T PF08480_consen 80 AIAQMYPDYDLSPKGSGYTTIVRNNIIVNTR 110 (198)
T ss_pred eEEEEecccccCCCCCceEEEEEcceEeeee
Confidence 34333 112334667778776654
No 72
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=68.50 E-value=8 Score=27.10 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=26.9
Q ss_pred eEEEeCCccEEEEeeeeecCCCCeeEeecCCeeEEEEcceecc
Q 015685 205 GVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTH 247 (402)
Q Consensus 205 aIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~ 247 (402)
||.+..+++..|..+.++...||.. ...+.+-+|..|.|.+
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~--~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIY--LTDSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEE--EEeCCCCEeECCEEEc
Confidence 4666677777777777777777544 3455666666666653
No 73
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=66.63 E-value=7.5 Score=35.47 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=26.5
Q ss_pred CCccEEEEeeeeecCCCCeeEeecCCeeEEEEcceecccCe
Q 015685 210 GGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDK 250 (402)
Q Consensus 210 gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H~k 250 (402)
+..++.|..|.|......-|.+..+++ ++|++|.|.+-..
T Consensus 183 ~~~~~~i~n~~~~~~~~~gi~i~~~~~-~~i~n~~i~~~~~ 222 (225)
T PF12708_consen 183 GNNNITISNNTFEGNCGNGINIEGGSN-IIISNNTIENCDD 222 (225)
T ss_dssp EEEEEEEECEEEESSSSESEEEEECSE-EEEEEEEEESSSE
T ss_pred ecceEEEEeEEECCccceeEEEECCeE-EEEEeEEEECCcc
Confidence 447888888888874444445444444 8888888876543
No 74
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=64.48 E-value=52 Score=31.81 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=36.1
Q ss_pred ccCCCeEEEeCCc-cEEEEeeeeecCCCCeeEeecCCeeEEEEcceecccCeee
Q 015685 200 VSDGDGVSIFGGT-HIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVM 252 (402)
Q Consensus 200 ~~d~DaIsi~gs~-nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~ 252 (402)
....||+++.+.. .+.|.-.++..+.|-.|- ..+.-.++|++-+..++.|..
T Consensus 93 dVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q-~Ng~Gtv~I~nF~a~d~GKl~ 145 (215)
T PF03211_consen 93 DVCEDAATFKGDGGTVTIIGGGARNASDKVFQ-HNGGGTVTIKNFYAEDFGKLY 145 (215)
T ss_dssp S-SSESEEEESSEEEEEEESTEEEEEEEEEEE-E-SSEEEEEEEEEEEEEEEEE
T ss_pred ccceeeeEEcCCCceEEEeCCcccCCCccEEE-ecCceeEEEEeEEEcCCCEEE
Confidence 3567888888776 888888888888888876 345566888885555555443
No 75
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=57.26 E-value=2.3e+02 Score=29.89 Aligned_cols=97 Identities=18% Similarity=0.226 Sum_probs=53.7
Q ss_pred EEEeeeccEEEEeeEEeecccCCCcccccCCCCCCCcc---ccCCCeEEEeCCccEEEEeeeeecCCCCeeEeecCCeeE
Q 015685 162 ITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRT---VSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAI 238 (402)
Q Consensus 162 i~i~~a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~---~~d~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~V 238 (402)
+.+....+++||+-.|.+.... -++...+ .-.|+ ..-.-||.-.+...+=|-||.|..|.=|.+. ....
T Consensus 139 ~~f~~~t~~~~hgC~F~gf~g~---cl~~~~~-~~VrGC~F~~C~~gi~~~~~~~lsVk~C~FekC~igi~s----~G~~ 210 (386)
T PF01696_consen 139 VVFHANTNTLFHGCSFFGFHGT---CLESWAG-GEVRGCTFYGCWKGIVSRGKSKLSVKKCVFEKCVIGIVS----EGPA 210 (386)
T ss_pred eEEEecceEEEEeeEEecCcce---eEEEcCC-cEEeeeEEEEEEEEeecCCcceEEeeheeeeheEEEEEe----cCCe
Confidence 3445677888888888764311 1110000 00000 0012233333456677788888888666643 3467
Q ss_pred EEEcceecccCeeeeecCCCCccCCCcceEEEEeeeeC
Q 015685 239 TISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFG 276 (402)
Q Consensus 239 TISnn~f~~H~k~~LiG~sd~~~~d~~~~vTi~~N~f~ 276 (402)
+|++|-|.+-.-..|++. .-++.||.|-
T Consensus 211 ~i~hn~~~ec~Cf~l~~g----------~g~i~~N~v~ 238 (386)
T PF01696_consen 211 RIRHNCASECGCFVLMKG----------TGSIKHNMVC 238 (386)
T ss_pred EEecceecccceEEEEcc----------cEEEeccEEe
Confidence 788888887666666654 3477788774
No 76
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=40.53 E-value=54 Score=33.47 Aligned_cols=53 Identities=17% Similarity=0.315 Sum_probs=31.1
Q ss_pred eeccEEEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEeCCccEEEEeeeeecCCCCee
Q 015685 166 YVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLV 229 (402)
Q Consensus 166 ~a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~gs~nVWIDHcs~s~~~Dgli 229 (402)
+.++.||||+.-+++.|. +.....-|.--+.|+|..|..||...+.++.--||
T Consensus 266 ngkhfvirnvkaknitpd-----------fskkagidnatvaiygcdnfvidni~mvnsagmli 318 (464)
T PRK10123 266 NGKHFVIRNIKAKNITPD-----------FSKKAGIDNATVAIYGCDNFVIDNIEMINSAGMLI 318 (464)
T ss_pred CCcEEEEEeeeccccCCC-----------chhhcCCCcceEEEEcccceEEeccccccccccEE
Confidence 456666666666655442 11111123445667788888888887777655444
No 77
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=39.76 E-value=1.1e+02 Score=30.15 Aligned_cols=91 Identities=18% Similarity=0.166 Sum_probs=52.1
Q ss_pred eccCeeEeccCCce-EEeCCceEEEeeeccEEEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEeC------Ccc
Q 015685 141 MNSFKTIDGRGASV-HIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFG------GTH 213 (402)
Q Consensus 141 v~snkTI~G~ga~~-~I~~G~gi~i~~a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~g------s~n 213 (402)
..++.+|.|.+-.. .+..|.+|.|..+ +..|+|-+|+++. .+||.+.+ ..+
T Consensus 95 ~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~~~---------------------~~GI~v~g~~~~~~i~~ 152 (246)
T PF07602_consen 95 LANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTNNG---------------------REGIFVTGTSANPGING 152 (246)
T ss_pred ecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEECCc---------------------cccEEEEeeecCCcccc
Confidence 35566666642110 0123667888665 8899999998752 34455443 234
Q ss_pred EEEEeeeeecCCCCeeEee-cCCeeEEEEcceecccCeeee
Q 015685 214 IWVDHCSLSNCDDGLVDAI-HGSTAITISNNFMTHHDKVML 253 (402)
Q Consensus 214 VWIDHcs~s~~~DgliDv~-~gs~~VTISnn~f~~H~k~~L 253 (402)
+.|.-+++....-|..-.. ...-...|.||+|.+-..++.
T Consensus 153 ~vI~GN~~~~~~~Gi~i~~~~~~~~n~I~NN~I~~N~~Gi~ 193 (246)
T PF07602_consen 153 NVISGNSIYFNKTGISISDNAAPVENKIENNIIENNNIGIV 193 (246)
T ss_pred eEeecceEEecCcCeEEEcccCCccceeeccEEEeCCcCeE
Confidence 5566667776666653211 111224789999997655443
No 78
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=38.29 E-value=3.7e+02 Score=25.76 Aligned_cols=72 Identities=11% Similarity=0.078 Sum_probs=43.2
Q ss_pred CccEEEEeeeeecC-CCCeeEe-----ecCCeeEEEEcceecccCeeeee--cCCCCccC-CCcceEEEEeeeeCCCCCC
Q 015685 211 GTHIWVDHCSLSNC-DDGLVDA-----IHGSTAITISNNFMTHHDKVMLL--GHSDTYTQ-DKNMQVTIAFNHFGEGLVQ 281 (402)
Q Consensus 211 s~nVWIDHcs~s~~-~DgliDv-----~~gs~~VTISnn~f~~H~k~~Li--G~sd~~~~-d~~~~vTi~~N~f~~~~~~ 281 (402)
+++|+|.|+.|..+ ....++. ..|-.+.-|-||.|..-..+.+. -....... ......++..|.+ .++.+
T Consensus 33 a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII-~NT~~ 111 (198)
T PF08480_consen 33 AKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNII-VNTRK 111 (198)
T ss_pred cccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceE-eeeee
Confidence 57999999999985 3333331 33455778999999853333222 11111222 2355677777777 47776
Q ss_pred CC
Q 015685 282 RI 283 (402)
Q Consensus 282 R~ 283 (402)
|.
T Consensus 112 r~ 113 (198)
T PF08480_consen 112 RK 113 (198)
T ss_pred cc
Confidence 64
No 79
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=33.97 E-value=62 Score=32.37 Aligned_cols=15 Identities=7% Similarity=0.051 Sum_probs=9.8
Q ss_pred eeeccEEEEeeEEee
Q 015685 165 QYVTNIIIHGLNIHD 179 (402)
Q Consensus 165 ~~a~NVIIrnL~i~~ 179 (402)
.+++|..|.|.+|.+
T Consensus 16 f~~~d~~l~~~~f~d 30 (277)
T PF12541_consen 16 FGSHDLRLENCTFAD 30 (277)
T ss_pred cccCCCEEEeeEEeC
Confidence 456677777777764
No 80
>PF10880 DUF2673: Protein of unknown function (DUF2673); InterPro: IPR024247 This family of proteins with unknown function appears to be restricted to Rickettsiae spp.
Probab=30.86 E-value=37 Score=26.23 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=16.8
Q ss_pred HHHHhhhhhhcCCCCChhhHHHH
Q 015685 13 LFLMTPALILASAVPDPELVVHE 35 (402)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~ 35 (402)
+.+..|.|+.+-+.|||..|+-.
T Consensus 11 lafa~pvfassmq~p~pasvttt 33 (65)
T PF10880_consen 11 LAFASPVFASSMQMPDPASVTTT 33 (65)
T ss_pred HHHhhhHhhhcccCCCCcceeHH
Confidence 44556777777789999998654
No 81
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=29.13 E-value=1.3e+02 Score=20.79 Aligned_cols=42 Identities=10% Similarity=0.116 Sum_probs=30.2
Q ss_pred eEEEeeeccEEEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEeCCccEEEEeeeeecC
Q 015685 161 CITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNC 224 (402)
Q Consensus 161 gi~i~~a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~gs~nVWIDHcs~s~~ 224 (402)
||.+..+++..|++=+|.+ ..|||.+..+++--|..+.++..
T Consensus 1 GI~l~~s~~~~i~~N~i~~----------------------~~~GI~~~~s~~n~i~~N~~~~n 42 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASN----------------------NSYGIYLTDSSNNTLSNNTASSN 42 (44)
T ss_pred CEEEEecCCCEEECcEEeC----------------------CCCEEEEEeCCCCEeECCEEEcC
Confidence 3566666666676666653 34699999998888888887653
No 82
>PF07822 Toxin_13: Neurotoxin B-IV-like protein; InterPro: IPR012497 The members of this family resemble neurotoxin B-IV (P01525 from SWISSPROT), which is a crustacean-selective neurotoxin produced by the marine worm Cerebratulus lacteus. This highly cationic peptide is approximately 55 residues and is arranged to form two antiparallel helices connected by a well-defined loop in a hairpin structure. The branches of the hairpin are linked by four disulphide bonds. Three residues identified as being important for activity, namely Arg-17, -25 and -34, are found on the same face of the molecule, while another residue important for activity, Trp30, is on the opposite side. The protein's mode of action is not entirely understood, but it may act on voltage-gated sodium channels, possibly by binding to an as yet uncharacterised site on these proteins. Its site of interaction may also be less specific, for example it may interact with negatively charged membrane lipids []. ; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1VIB_A.
Probab=27.71 E-value=9.7 Score=28.28 Aligned_cols=22 Identities=41% Similarity=1.004 Sum_probs=14.7
Q ss_pred CcceeccCcccccccccccc-cc
Q 015685 58 IDDCWRCDPNWEKNRQRLAD-CA 79 (402)
Q Consensus 58 id~cwr~~~~w~~~r~~la~-~a 79 (402)
-|+|.||.-.|+-.|-.-|. |+
T Consensus 20 yd~ci~cqgkwagkrgkcaahc~ 42 (55)
T PF07822_consen 20 YDDCIRCQGKWAGKRGKCAAHCI 42 (55)
T ss_dssp HHHH--TTGGGTT-HHHHHHHHH
T ss_pred hhHHheecceeccccCcchhhee
Confidence 69999999999988866543 54
No 83
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=22.77 E-value=48 Score=27.94 Aligned_cols=9 Identities=44% Similarity=0.497 Sum_probs=3.7
Q ss_pred cCCCCChhh
Q 015685 23 ASAVPDPEL 31 (402)
Q Consensus 23 ~~~~~~~~~ 31 (402)
++.+..+++
T Consensus 20 sSevaa~~~ 28 (95)
T PF07172_consen 20 SSEVAAREL 28 (95)
T ss_pred HhhhhhHHh
Confidence 444444333
No 84
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=22.15 E-value=2.3e+02 Score=30.70 Aligned_cols=48 Identities=13% Similarity=0.242 Sum_probs=32.5
Q ss_pred eeccEEEEeeEEeecccCCCcccccCCCCCCCccccCCCeEEEe-CCccEEEEeeeeecCCCCeeE
Q 015685 166 YVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 230 (402)
Q Consensus 166 ~a~NVIIrnL~i~~~~~~~~~~ir~s~~~~g~~~~~d~DaIsi~-gs~nVWIDHcs~s~~~DgliD 230 (402)
.+++++.|||+|++-... .+.-|+-+. .+..+-+.+|.|.-..|=|.+
T Consensus 268 ~~~~F~a~nitf~Ntag~-----------------~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~ 316 (497)
T PLN02698 268 TGDGFIARDIGFKNAAGP-----------------KGEQAIALSITSDHSVLYRCSIAGYQDTLYA 316 (497)
T ss_pred ECCCeEEEeeEEEECCCC-----------------CCCceEEEEecCCcEEEEcceeecccchhee
Confidence 689999999999985311 122344443 467888888888876665553
Done!