Query 015686
Match_columns 402
No_of_seqs 352 out of 2182
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 08:37:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015686.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015686hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 99.9 2.9E-27 6.2E-32 236.8 17.7 149 224-402 106-255 (346)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 6.4E-26 1.4E-30 226.3 17.8 148 225-402 3-151 (352)
3 TIGR01622 SF-CC1 splicing fact 99.9 1.6E-25 3.4E-30 231.4 18.9 162 220-402 84-248 (457)
4 TIGR01645 half-pint poly-U bin 99.9 1.1E-25 2.4E-30 237.4 18.0 158 224-402 106-266 (612)
5 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.1E-23 2.4E-28 220.4 19.1 156 220-402 170-357 (509)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.4E-23 3E-28 209.5 18.5 157 225-402 89-331 (352)
7 TIGR01628 PABP-1234 polyadenyl 99.9 1.9E-23 4.2E-28 221.7 16.9 147 227-402 2-149 (562)
8 KOG0148 Apoptosis-promoting RN 99.9 8.1E-23 1.7E-27 192.2 14.0 151 225-402 62-220 (321)
9 KOG0127 Nucleolar protein fibr 99.9 3.9E-22 8.5E-27 201.9 15.8 154 226-401 118-353 (678)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 7.4E-22 1.6E-26 206.3 17.8 147 225-402 2-154 (481)
11 KOG0117 Heterogeneous nuclear 99.9 2.5E-22 5.3E-27 199.6 13.4 141 225-400 83-226 (506)
12 TIGR01628 PABP-1234 polyadenyl 99.9 6.5E-22 1.4E-26 210.0 17.0 155 225-402 178-346 (562)
13 KOG0131 Splicing factor 3b, su 99.9 1.6E-22 3.4E-27 180.7 9.6 149 225-402 9-159 (203)
14 TIGR01648 hnRNP-R-Q heterogene 99.9 1.5E-21 3.3E-26 205.7 16.4 142 225-401 58-201 (578)
15 KOG0144 RNA-binding protein CU 99.9 8E-22 1.7E-26 195.2 11.2 151 222-402 31-185 (510)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 5.6E-21 1.2E-25 199.7 17.9 151 224-402 274-456 (481)
17 TIGR01642 U2AF_lg U2 snRNP aux 99.9 9.1E-21 2E-25 198.4 17.6 158 224-402 294-484 (509)
18 KOG0127 Nucleolar protein fibr 99.8 8.3E-21 1.8E-25 192.4 14.1 156 225-402 5-178 (678)
19 KOG0110 RNA-binding protein (R 99.8 1.1E-20 2.3E-25 196.7 11.4 157 228-402 518-675 (725)
20 KOG0145 RNA-binding protein EL 99.8 2.4E-20 5.3E-25 174.6 11.2 148 225-402 41-189 (360)
21 TIGR01648 hnRNP-R-Q heterogene 99.8 1.7E-18 3.6E-23 182.8 16.2 148 225-402 138-289 (578)
22 KOG0117 Heterogeneous nuclear 99.8 2.2E-18 4.7E-23 171.6 13.6 147 224-402 163-313 (506)
23 KOG0124 Polypyrimidine tract-b 99.8 5.6E-19 1.2E-23 171.9 8.3 155 225-400 113-270 (544)
24 TIGR01622 SF-CC1 splicing fact 99.8 7.9E-18 1.7E-22 174.1 17.2 153 225-402 186-430 (457)
25 KOG0145 RNA-binding protein EL 99.8 3.3E-18 7.1E-23 160.4 12.9 157 225-402 127-340 (360)
26 KOG0123 Polyadenylate-binding 99.8 4.7E-18 1E-22 171.6 13.2 133 226-402 2-135 (369)
27 KOG0147 Transcriptional coacti 99.7 6.8E-19 1.5E-23 179.2 5.3 164 218-402 172-340 (549)
28 KOG4205 RNA-binding protein mu 99.7 3.4E-18 7.3E-23 167.9 9.9 153 224-400 5-157 (311)
29 KOG0109 RNA-binding protein LA 99.7 4.6E-18 9.9E-23 161.6 9.8 127 227-401 4-131 (346)
30 KOG0123 Polyadenylate-binding 99.7 4.3E-17 9.4E-22 164.6 11.7 151 226-402 77-228 (369)
31 KOG0105 Alternative splicing f 99.7 3.7E-16 8E-21 140.3 13.5 148 223-401 4-169 (241)
32 KOG0148 Apoptosis-promoting RN 99.6 8.9E-16 1.9E-20 144.9 10.5 120 224-402 5-124 (321)
33 KOG4206 Spliceosomal protein s 99.6 4.4E-15 9.5E-20 137.5 14.0 148 225-401 9-202 (221)
34 KOG0144 RNA-binding protein CU 99.6 2.3E-15 4.9E-20 149.7 9.9 63 336-402 424-486 (510)
35 KOG0146 RNA-binding protein ET 99.6 4.8E-15 1E-19 139.7 10.6 63 336-402 285-347 (371)
36 KOG4211 Splicing factor hnRNP- 99.6 2.2E-14 4.8E-19 144.9 14.9 151 225-400 10-163 (510)
37 KOG1548 Transcription elongati 99.5 1.2E-13 2.5E-18 134.5 15.5 166 219-402 128-334 (382)
38 KOG0129 Predicted RNA-binding 99.5 5E-14 1.1E-18 143.2 13.4 167 220-401 254-432 (520)
39 TIGR01645 half-pint poly-U bin 99.5 1.5E-13 3.3E-18 145.8 16.8 79 224-319 203-282 (612)
40 PLN03134 glycine-rich RNA-bind 99.5 5.6E-14 1.2E-18 124.4 9.6 82 223-321 32-114 (144)
41 COG0724 RNA-binding proteins ( 99.5 2.6E-13 5.7E-18 126.5 13.5 151 225-396 115-281 (306)
42 PF00076 RRM_1: RNA recognitio 99.5 1.9E-13 4.1E-18 104.0 8.0 69 228-314 1-70 (70)
43 KOG4212 RNA-binding protein hn 99.5 7.5E-13 1.6E-17 132.0 14.0 155 225-402 44-276 (608)
44 KOG1457 RNA binding protein (c 99.4 1.2E-12 2.5E-17 121.0 12.0 159 219-401 28-267 (284)
45 PLN03120 nucleic acid binding 99.4 4.6E-13 9.9E-18 128.0 8.4 75 225-319 4-78 (260)
46 KOG0121 Nuclear cap-binding pr 99.4 8E-13 1.7E-17 112.6 6.5 79 224-319 35-114 (153)
47 KOG0147 Transcriptional coacti 99.4 1.9E-12 4.2E-17 132.4 10.5 150 227-402 280-510 (549)
48 PLN03134 glycine-rich RNA-bind 99.3 3.9E-12 8.4E-17 112.7 9.1 65 334-402 32-96 (144)
49 KOG0110 RNA-binding protein (R 99.3 6.4E-12 1.4E-16 131.8 11.1 157 218-402 378-580 (725)
50 PF14259 RRM_6: RNA recognitio 99.3 5.1E-12 1.1E-16 97.0 7.4 69 228-314 1-70 (70)
51 KOG0106 Alternative splicing f 99.3 3.3E-12 7.2E-17 119.2 6.6 139 227-402 3-153 (216)
52 PLN03121 nucleic acid binding 99.3 7.9E-12 1.7E-16 117.9 8.6 75 225-319 5-79 (243)
53 KOG0107 Alternative splicing f 99.3 5.1E-12 1.1E-16 113.0 6.6 75 225-321 10-85 (195)
54 KOG0149 Predicted RNA-binding 99.3 7.8E-12 1.7E-16 116.5 7.1 79 225-320 12-90 (247)
55 KOG0126 Predicted RNA-binding 99.3 8.6E-13 1.9E-17 118.5 0.4 80 224-320 34-114 (219)
56 PF00076 RRM_1: RNA recognitio 99.2 2.2E-11 4.7E-16 92.5 7.1 58 339-401 1-58 (70)
57 smart00362 RRM_2 RNA recogniti 99.2 3.8E-11 8.2E-16 90.0 8.1 71 227-316 1-72 (72)
58 KOG0125 Ataxin 2-binding prote 99.2 1.5E-11 3.2E-16 119.2 7.3 78 225-321 96-174 (376)
59 KOG0114 Predicted RNA-binding 99.2 3.1E-11 6.7E-16 99.5 6.9 77 225-321 18-95 (124)
60 PLN03213 repressor of silencin 99.2 4.8E-11 1E-15 120.7 8.5 75 225-320 10-87 (759)
61 PF14259 RRM_6: RNA recognitio 99.2 7.2E-11 1.6E-15 90.6 7.4 58 339-401 1-58 (70)
62 KOG0149 Predicted RNA-binding 99.2 4E-11 8.7E-16 111.8 6.9 61 336-400 12-72 (247)
63 KOG0122 Translation initiation 99.2 6.1E-11 1.3E-15 111.1 7.8 81 224-321 188-269 (270)
64 TIGR01659 sex-lethal sex-letha 99.2 9.1E-11 2E-15 118.0 8.8 66 333-402 104-169 (346)
65 KOG0113 U1 small nuclear ribon 99.1 1.4E-10 3.1E-15 111.3 8.0 79 224-319 100-179 (335)
66 KOG1190 Polypyrimidine tract-b 99.1 7.5E-10 1.6E-14 110.1 13.0 147 225-401 297-471 (492)
67 KOG0122 Translation initiation 99.1 1.5E-10 3.4E-15 108.4 7.7 66 333-402 186-251 (270)
68 cd00590 RRM RRM (RNA recogniti 99.1 3.3E-10 7.2E-15 85.2 8.1 72 227-316 1-73 (74)
69 smart00360 RRM RNA recognition 99.1 3.3E-10 7.2E-15 84.4 7.1 70 230-316 1-71 (71)
70 KOG4210 Nuclear localization s 99.0 2.8E-10 6E-15 111.5 6.5 155 224-400 87-245 (285)
71 KOG1365 RNA-binding protein Fu 99.0 3.2E-10 7E-15 111.8 6.0 153 225-399 161-341 (508)
72 KOG4207 Predicted splicing fac 99.0 4.7E-10 1E-14 102.9 6.6 78 225-319 13-91 (256)
73 smart00362 RRM_2 RNA recogniti 99.0 1.8E-09 3.9E-14 80.7 7.8 59 338-402 1-59 (72)
74 PLN03120 nucleic acid binding 99.0 1.3E-09 2.8E-14 104.5 8.1 59 336-401 4-62 (260)
75 smart00360 RRM RNA recognition 98.9 2.7E-09 5.9E-14 79.4 7.4 58 341-402 1-58 (71)
76 KOG0120 Splicing factor U2AF, 98.9 3.8E-09 8.2E-14 109.4 10.5 157 225-402 289-474 (500)
77 KOG0108 mRNA cleavage and poly 98.9 1.4E-09 3E-14 111.7 6.6 79 226-321 19-98 (435)
78 COG0724 RNA-binding proteins ( 98.9 3.3E-09 7.2E-14 98.7 8.2 63 336-402 115-177 (306)
79 KOG0124 Polypyrimidine tract-b 98.9 1E-08 2.2E-13 100.8 11.4 78 225-319 210-288 (544)
80 KOG0111 Cyclophilin-type pepti 98.9 1.1E-09 2.3E-14 101.4 4.2 81 224-321 9-90 (298)
81 PLN03121 nucleic acid binding 98.9 4.5E-09 9.7E-14 99.4 8.4 60 335-401 4-63 (243)
82 KOG0125 Ataxin 2-binding prote 98.9 3E-09 6.4E-14 103.4 7.1 64 333-402 93-156 (376)
83 KOG4211 Splicing factor hnRNP- 98.9 8.4E-09 1.8E-13 104.9 10.2 151 225-399 103-338 (510)
84 KOG4207 Predicted splicing fac 98.9 2.7E-09 5.9E-14 97.9 6.0 69 330-402 7-75 (256)
85 KOG0121 Nuclear cap-binding pr 98.9 3.1E-09 6.6E-14 90.9 5.6 64 335-402 35-98 (153)
86 KOG0130 RNA-binding protein RB 98.9 2.7E-09 5.9E-14 91.9 5.0 80 224-320 71-151 (170)
87 KOG0113 U1 small nuclear ribon 98.9 5E-09 1.1E-13 100.7 7.3 64 333-400 98-161 (335)
88 cd00590 RRM RRM (RNA recogniti 98.8 2E-08 4.4E-13 75.3 8.0 60 338-402 1-60 (74)
89 KOG0128 RNA-binding protein SA 98.8 5.2E-10 1.1E-14 119.6 -1.8 131 222-399 664-794 (881)
90 PF13893 RRM_5: RNA recognitio 98.8 9.4E-09 2E-13 75.8 5.3 55 242-318 1-56 (56)
91 KOG4454 RNA binding protein (R 98.8 2.1E-09 4.6E-14 99.4 1.0 133 225-399 9-142 (267)
92 PLN03213 repressor of silencin 98.7 1.6E-08 3.4E-13 102.8 7.2 60 335-402 9-70 (759)
93 KOG1190 Polypyrimidine tract-b 98.7 1.7E-08 3.8E-13 100.5 7.4 147 224-402 27-208 (492)
94 KOG0126 Predicted RNA-binding 98.7 1.1E-09 2.4E-14 98.7 -1.0 62 333-398 32-93 (219)
95 smart00361 RRM_1 RNA recogniti 98.7 2.9E-08 6.2E-13 76.9 6.8 62 239-315 2-69 (70)
96 KOG0120 Splicing factor U2AF, 98.7 2.6E-08 5.7E-13 103.2 8.0 152 222-400 172-349 (500)
97 KOG0114 Predicted RNA-binding 98.7 4.2E-08 9.1E-13 81.1 6.8 61 335-402 17-77 (124)
98 KOG1365 RNA-binding protein Fu 98.7 1.9E-07 4.2E-12 92.5 12.0 158 225-400 60-224 (508)
99 KOG0131 Splicing factor 3b, su 98.7 2E-08 4.3E-13 90.7 4.5 64 335-402 8-71 (203)
100 KOG0153 Predicted RNA-binding 98.7 6E-08 1.3E-12 95.1 7.9 77 221-320 224-302 (377)
101 KOG0107 Alternative splicing f 98.6 4E-08 8.6E-13 88.3 5.7 59 335-402 9-67 (195)
102 KOG0132 RNA polymerase II C-te 98.6 5.6E-08 1.2E-12 103.3 6.5 110 223-359 419-529 (894)
103 KOG0108 mRNA cleavage and poly 98.6 6.4E-08 1.4E-12 99.6 6.7 62 337-402 19-80 (435)
104 KOG0130 RNA-binding protein RB 98.6 6.9E-08 1.5E-12 83.4 5.4 65 334-402 70-134 (170)
105 KOG0109 RNA-binding protein LA 98.6 5.2E-08 1.1E-12 93.6 4.7 73 224-321 77-150 (346)
106 KOG0415 Predicted peptidyl pro 98.5 1E-07 2.2E-12 93.7 6.1 80 225-321 239-319 (479)
107 KOG4661 Hsp27-ERE-TATA-binding 98.5 1.2E-07 2.6E-12 97.8 6.0 81 223-320 403-484 (940)
108 KOG0112 Large RNA-binding prot 98.5 6.9E-08 1.5E-12 104.1 3.9 145 219-402 366-511 (975)
109 smart00361 RRM_1 RNA recogniti 98.5 3.2E-07 7E-12 71.0 6.6 49 350-402 2-57 (70)
110 KOG1456 Heterogeneous nuclear 98.5 1.4E-06 3E-11 86.3 12.3 153 223-402 285-467 (494)
111 KOG4205 RNA-binding protein mu 98.5 2.5E-07 5.4E-12 91.5 6.3 115 225-360 97-211 (311)
112 KOG4208 Nucleolar RNA-binding 98.5 3.8E-07 8.3E-12 84.0 7.1 80 225-321 49-130 (214)
113 KOG0111 Cyclophilin-type pepti 98.5 9.5E-08 2.1E-12 88.6 3.0 65 334-402 8-72 (298)
114 KOG1456 Heterogeneous nuclear 98.4 3.4E-06 7.4E-11 83.6 12.7 147 224-402 30-179 (494)
115 KOG0146 RNA-binding protein ET 98.4 3.5E-07 7.6E-12 87.1 5.5 84 221-321 281-365 (371)
116 KOG4676 Splicing factor, argin 98.4 3.3E-07 7.1E-12 91.1 5.1 156 225-402 7-209 (479)
117 KOG0116 RasGAP SH3 binding pro 98.4 7.9E-07 1.7E-11 91.1 7.2 79 223-318 286-364 (419)
118 KOG4212 RNA-binding protein hn 98.3 8.6E-07 1.9E-11 89.2 6.3 63 336-402 44-106 (608)
119 KOG0151 Predicted splicing reg 98.3 1E-06 2.2E-11 93.2 7.0 89 217-319 166-255 (877)
120 KOG4208 Nucleolar RNA-binding 98.3 2E-06 4.4E-11 79.3 7.2 67 333-402 46-112 (214)
121 KOG0105 Alternative splicing f 98.2 1.1E-06 2.4E-11 79.7 4.7 59 335-400 5-63 (241)
122 KOG0226 RNA-binding proteins [ 98.2 3.3E-06 7.1E-11 80.1 6.3 152 226-402 97-252 (290)
123 KOG4209 Splicing factor RNPS1, 98.1 2.3E-06 5E-11 81.5 4.3 78 225-319 101-178 (231)
124 KOG0533 RRM motif-containing p 98.1 5.2E-06 1.1E-10 79.4 6.3 79 225-321 83-162 (243)
125 KOG4660 Protein Mei2, essentia 98.1 8.2E-06 1.8E-10 84.6 7.1 74 222-317 72-146 (549)
126 KOG0415 Predicted peptidyl pro 98.0 5.3E-06 1.2E-10 81.8 5.2 64 332-399 235-298 (479)
127 PF04059 RRM_2: RNA recognitio 98.0 2.4E-05 5.1E-10 64.8 7.5 62 337-400 2-63 (97)
128 KOG4206 Spliceosomal protein s 98.0 1.5E-05 3.3E-10 74.5 7.0 61 335-402 8-72 (221)
129 KOG0132 RNA polymerase II C-te 97.9 1.9E-05 4.1E-10 84.6 5.6 59 334-402 419-477 (894)
130 PF13893 RRM_5: RNA recognitio 97.8 3.6E-05 7.9E-10 56.5 5.1 41 353-402 1-41 (56)
131 KOG0153 Predicted RNA-binding 97.8 4.4E-05 9.6E-10 75.3 6.0 59 333-401 225-283 (377)
132 KOG0116 RasGAP SH3 binding pro 97.7 4.7E-05 1E-09 78.3 5.3 62 336-401 288-349 (419)
133 KOG0128 RNA-binding protein SA 97.7 5.4E-06 1.2E-10 89.4 -2.1 155 225-401 571-728 (881)
134 KOG1457 RNA binding protein (c 97.6 0.00014 3.1E-09 68.0 7.1 64 335-402 33-97 (284)
135 KOG4209 Splicing factor RNPS1, 97.6 6.1E-05 1.3E-09 71.9 4.9 64 334-401 99-162 (231)
136 KOG2193 IGF-II mRNA-binding pr 97.6 8.3E-06 1.8E-10 82.0 -1.3 132 227-400 3-137 (584)
137 KOG0533 RRM motif-containing p 97.6 0.00012 2.6E-09 70.1 6.1 61 336-401 83-143 (243)
138 KOG4307 RNA binding protein RB 97.6 9.2E-05 2E-09 78.6 5.6 153 225-400 311-494 (944)
139 KOG4661 Hsp27-ERE-TATA-binding 97.6 0.00011 2.4E-09 76.4 6.1 64 335-402 404-467 (940)
140 PF04059 RRM_2: RNA recognitio 97.5 0.00024 5.3E-09 58.8 6.4 79 226-319 2-85 (97)
141 PF11608 Limkain-b1: Limkain b 97.5 0.00016 3.4E-09 58.0 4.6 67 226-319 3-75 (90)
142 KOG0226 RNA-binding proteins [ 97.5 0.00014 3.1E-09 69.2 4.7 78 225-319 190-268 (290)
143 KOG4660 Protein Mei2, essentia 97.3 0.00021 4.5E-09 74.4 4.3 61 333-402 72-132 (549)
144 KOG4454 RNA binding protein (R 97.2 0.00019 4.1E-09 67.0 2.8 63 334-402 7-69 (267)
145 PF08777 RRM_3: RNA binding mo 97.2 0.00053 1.2E-08 57.6 5.2 55 337-401 2-56 (105)
146 KOG1855 Predicted RNA-binding 97.2 0.00046 9.9E-09 69.9 4.9 82 216-304 222-306 (484)
147 KOG4210 Nuclear localization s 97.2 0.00027 5.8E-09 69.6 3.1 80 225-321 184-264 (285)
148 COG5175 MOT2 Transcriptional r 97.1 0.00055 1.2E-08 67.5 4.8 116 226-358 115-242 (480)
149 KOG1548 Transcription elongati 97.0 0.0017 3.6E-08 64.4 6.6 62 336-402 134-203 (382)
150 KOG0106 Alternative splicing f 96.9 0.00049 1.1E-08 64.8 2.0 71 224-319 98-169 (216)
151 PF08777 RRM_3: RNA binding mo 96.8 0.0025 5.3E-08 53.6 5.4 54 226-302 2-55 (105)
152 KOG1995 Conserved Zn-finger pr 96.8 0.0012 2.5E-08 65.8 3.8 89 224-321 65-154 (351)
153 KOG0151 Predicted splicing reg 96.7 0.0024 5.2E-08 68.3 5.4 65 334-402 172-239 (877)
154 PF05172 Nup35_RRM: Nup53/35/4 96.6 0.0078 1.7E-07 50.1 7.2 83 225-318 6-89 (100)
155 PF11608 Limkain-b1: Limkain b 96.5 0.0056 1.2E-07 49.2 5.5 52 337-401 3-58 (90)
156 PF14605 Nup35_RRM_2: Nup53/35 96.5 0.0061 1.3E-07 44.8 5.3 52 226-301 2-53 (53)
157 KOG4307 RNA binding protein RB 96.4 0.0056 1.2E-07 65.5 6.1 75 225-317 867-943 (944)
158 KOG3152 TBP-binding protein, a 96.3 0.0038 8.3E-08 59.6 3.9 83 225-312 74-157 (278)
159 PF14605 Nup35_RRM_2: Nup53/35 96.1 0.012 2.7E-07 43.1 4.8 52 337-399 2-53 (53)
160 KOG0129 Predicted RNA-binding 96.0 0.017 3.6E-07 60.1 7.3 76 224-317 369-450 (520)
161 KOG4849 mRNA cleavage factor I 95.8 0.0055 1.2E-07 60.8 2.3 65 336-402 80-144 (498)
162 KOG4849 mRNA cleavage factor I 95.7 0.0092 2E-07 59.3 3.5 77 225-318 80-159 (498)
163 KOG0115 RNA-binding protein p5 95.7 0.013 2.8E-07 56.2 4.2 84 297-401 7-91 (275)
164 KOG1855 Predicted RNA-binding 95.5 0.021 4.5E-07 58.3 5.4 64 335-402 230-306 (484)
165 PF08952 DUF1866: Domain of un 95.5 0.028 6E-07 49.9 5.6 70 225-319 27-105 (146)
166 KOG1995 Conserved Zn-finger pr 95.5 0.015 3.2E-07 58.1 4.2 64 334-401 64-135 (351)
167 KOG1996 mRNA splicing factor [ 95.2 0.038 8.2E-07 53.9 5.9 64 239-318 300-364 (378)
168 KOG2314 Translation initiation 95.0 0.067 1.4E-06 56.4 7.3 74 225-316 58-139 (698)
169 KOG0112 Large RNA-binding prot 94.9 0.029 6.2E-07 61.8 4.4 75 224-321 454-531 (975)
170 PF03467 Smg4_UPF3: Smg-4/UPF3 94.2 0.049 1.1E-06 49.9 3.9 73 225-310 7-82 (176)
171 KOG2416 Acinus (induces apopto 93.8 0.027 5.8E-07 59.5 1.4 76 221-319 440-520 (718)
172 PF10309 DUF2414: Protein of u 93.6 0.35 7.5E-06 36.8 6.7 57 337-402 6-62 (62)
173 KOG4676 Splicing factor, argin 93.4 0.061 1.3E-06 54.4 3.0 61 337-401 8-71 (479)
174 KOG2314 Translation initiation 93.4 0.18 3.8E-06 53.3 6.4 62 336-402 58-125 (698)
175 PF08675 RNA_bind: RNA binding 93.0 0.47 1E-05 38.2 7.0 52 225-302 9-60 (87)
176 KOG3152 TBP-binding protein, a 92.9 0.062 1.3E-06 51.6 2.1 63 336-402 74-148 (278)
177 PF08675 RNA_bind: RNA binding 92.2 0.33 7.2E-06 39.1 5.1 52 337-401 10-61 (87)
178 KOG2202 U2 snRNP splicing fact 92.1 0.052 1.1E-06 52.1 0.5 62 240-319 83-146 (260)
179 PF07292 NID: Nmi/IFP 35 domai 90.7 0.15 3.3E-06 41.5 1.9 72 287-358 1-74 (88)
180 KOG2068 MOT2 transcription fac 90.7 0.12 2.6E-06 51.4 1.5 82 226-321 78-163 (327)
181 KOG4285 Mitotic phosphoprotein 90.6 0.41 8.9E-06 47.1 5.0 72 226-321 198-270 (350)
182 KOG2416 Acinus (induces apopto 90.1 0.19 4E-06 53.4 2.3 62 332-402 440-501 (718)
183 KOG2253 U1 snRNP complex, subu 88.9 0.26 5.6E-06 53.0 2.4 111 224-360 39-159 (668)
184 KOG2135 Proteins containing th 87.8 0.26 5.7E-06 51.0 1.5 74 224-320 371-445 (526)
185 PF10309 DUF2414: Protein of u 87.5 2.3 5E-05 32.3 6.1 51 226-302 6-60 (62)
186 PF03467 Smg4_UPF3: Smg-4/UPF3 86.8 0.9 1.9E-05 41.6 4.3 61 336-400 7-73 (176)
187 PF05172 Nup35_RRM: Nup53/35/4 83.7 3.3 7.2E-05 34.5 5.9 60 336-400 6-72 (100)
188 PF14111 DUF4283: Domain of un 83.7 1.8 4E-05 37.6 4.7 82 285-373 56-138 (153)
189 PF10567 Nab6_mRNP_bdg: RNA-re 83.1 12 0.00026 37.0 10.3 167 225-402 15-211 (309)
190 PF15023 DUF4523: Protein of u 82.2 3.5 7.7E-05 36.6 5.7 59 333-402 83-145 (166)
191 KOG2591 c-Mpl binding protein, 81.0 6 0.00013 42.1 7.9 59 335-402 174-232 (684)
192 KOG0115 RNA-binding protein p5 80.4 1.5 3.3E-05 42.3 3.1 74 226-317 32-110 (275)
193 PF15023 DUF4523: Protein of u 79.8 2.8 6.1E-05 37.2 4.3 70 225-318 86-159 (166)
194 PF04847 Calcipressin: Calcipr 79.4 4.5 9.7E-05 37.4 5.8 59 238-319 8-69 (184)
195 COG5175 MOT2 Transcriptional r 79.0 3.8 8.3E-05 41.1 5.4 63 335-401 113-184 (480)
196 PF11767 SET_assoc: Histone ly 78.6 8.8 0.00019 29.5 6.2 54 236-315 11-65 (66)
197 KOG0804 Cytoplasmic Zn-finger 78.4 6.1 0.00013 41.1 6.8 67 225-310 74-142 (493)
198 KOG4483 Uncharacterized conser 78.4 11 0.00024 38.7 8.6 67 224-314 390-457 (528)
199 PF07576 BRAP2: BRCA1-associat 74.3 14 0.00031 31.2 7.0 66 226-310 14-81 (110)
200 PF07576 BRAP2: BRCA1-associat 73.6 25 0.00055 29.7 8.4 60 336-400 13-72 (110)
201 KOG0804 Cytoplasmic Zn-finger 68.0 10 0.00022 39.5 5.5 59 336-399 74-132 (493)
202 KOG2318 Uncharacterized conser 65.4 38 0.00081 36.6 9.2 86 222-310 171-295 (650)
203 KOG1996 mRNA splicing factor [ 64.6 14 0.0003 36.6 5.4 64 335-402 280-349 (378)
204 KOG4410 5-formyltetrahydrofola 64.6 7.1 0.00015 38.4 3.5 48 225-295 330-378 (396)
205 KOG2591 c-Mpl binding protein, 63.2 12 0.00026 40.0 5.0 66 225-314 175-245 (684)
206 KOG2253 U1 snRNP complex, subu 60.2 4.7 0.0001 43.7 1.6 57 333-402 37-93 (668)
207 PF08952 DUF1866: Domain of un 59.0 19 0.00041 32.1 4.9 57 333-401 24-89 (146)
208 KOG2891 Surface glycoprotein [ 56.0 7 0.00015 38.3 1.8 34 225-258 149-194 (445)
209 KOG2202 U2 snRNP splicing fact 53.3 4.8 0.0001 38.9 0.3 38 364-402 93-130 (260)
210 PF03880 DbpA: DbpA RNA bindin 51.6 13 0.00028 28.8 2.4 58 235-318 11-74 (74)
211 KOG2068 MOT2 transcription fac 51.3 16 0.00034 36.7 3.5 61 336-400 77-143 (327)
212 KOG4410 5-formyltetrahydrofola 48.9 31 0.00067 34.1 4.9 48 336-392 330-377 (396)
213 TIGR02542 B_forsyth_147 Bacter 46.4 33 0.00071 29.5 4.1 48 344-392 82-129 (145)
214 KOG2891 Surface glycoprotein [ 45.6 25 0.00054 34.6 3.7 37 335-375 148-196 (445)
215 KOG4574 RNA-binding protein (c 41.2 11 0.00024 42.1 0.7 70 227-319 300-372 (1007)
216 KOG4483 Uncharacterized conser 40.6 44 0.00095 34.5 4.7 56 336-401 391-446 (528)
217 KOG0156 Cytochrome P450 CYP2 s 33.9 45 0.00098 35.5 3.9 58 229-313 36-97 (489)
218 KOG2318 Uncharacterized conser 33.0 49 0.0011 35.7 3.9 43 333-375 171-214 (650)
219 KOG4574 RNA-binding protein (c 32.7 21 0.00044 40.1 1.1 55 338-402 300-354 (1007)
220 KOG1295 Nonsense-mediated deca 31.1 51 0.0011 33.8 3.5 70 225-309 7-78 (376)
221 PF03468 XS: XS domain; Inter 28.8 61 0.0013 27.6 3.1 48 338-392 10-66 (116)
222 COG5193 LHP1 La protein, small 28.7 30 0.00065 35.7 1.4 62 336-399 174-243 (438)
223 PF03468 XS: XS domain; Inter 26.6 78 0.0017 26.9 3.4 59 227-305 10-78 (116)
224 PF15513 DUF4651: Domain of un 24.0 1.5E+02 0.0033 22.6 4.1 19 239-257 8-26 (62)
225 KOG4285 Mitotic phosphoprotein 23.0 1.7E+02 0.0037 29.3 5.4 53 337-400 198-250 (350)
226 KOG4008 rRNA processing protei 23.0 69 0.0015 30.9 2.6 34 224-257 39-72 (261)
227 PF10567 Nab6_mRNP_bdg: RNA-re 22.1 1.5E+02 0.0033 29.5 4.8 59 335-397 14-79 (309)
228 PF11767 SET_assoc: Histone ly 22.0 2.9E+02 0.0062 21.2 5.4 42 347-401 11-52 (66)
229 PF14893 PNMA: PNMA 21.4 79 0.0017 32.0 2.9 33 225-257 18-51 (331)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=2.9e-27 Score=236.77 Aligned_cols=149 Identities=20% Similarity=0.293 Sum_probs=132.6
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..++|||+|||+++|+++|+++|+.||.|.+|+|+.++. + ++++|||||+|.+.++|..||.
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~--t---------------g~srGyaFVeF~~~e~A~~Ai~~ 168 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYK--T---------------GYSFGYAFVDFGSEADSQRAIKN 168 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC--C---------------CccCcEEEEEEccHHHHHHHHHH
Confidence 368999999999999999999999999999999965432 1 2367999999999999999995
Q ss_pred ccceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCc
Q 015686 303 FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGK 382 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~sk 382 (402)
||+..|.++.|.|.++.+... ....++|||+|||..+++++|+++|..| |.|..|+|++|..+|.++
T Consensus 169 LnG~~l~gr~i~V~~a~p~~~---------~~~~~~lfV~nLp~~vtee~L~~~F~~f----G~V~~v~i~~d~~tg~~k 235 (346)
T TIGR01659 169 LNGITVRNKRLKVSYARPGGE---------SIKDTNLYVTNLPRTITDDQLDTIFGKY----GQIVQKNILRDKLTGTPR 235 (346)
T ss_pred cCCCccCCceeeeeccccccc---------ccccceeEEeCCCCcccHHHHHHHHHhc----CCEEEEEEeecCCCCccc
Confidence 999999999999998764321 1235689999999999999999999999 999999999998899999
Q ss_pred eEEEEEecCHHHHHHHHHhC
Q 015686 383 GIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 383 G~aFV~F~s~e~A~~Al~~l 402 (402)
|||||+|.++++|.+||+.|
T Consensus 236 G~aFV~F~~~e~A~~Ai~~l 255 (346)
T TIGR01659 236 GVAFVRFNKREEAQEAISAL 255 (346)
T ss_pred eEEEEEECCHHHHHHHHHHh
Confidence 99999999999999999865
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=6.4e-26 Score=226.30 Aligned_cols=148 Identities=16% Similarity=0.287 Sum_probs=131.7
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
..+|||+|||+++++++|+.+|+.||+|.+|+|++++.+ ++++|||||+|.+.++|..||. |
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~-----------------g~s~g~afV~f~~~~~A~~Ai~~l 65 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVT-----------------GQSLGYGFVNYVRPEDAEKAVNSL 65 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCC-----------------CccceEEEEEECcHHHHHHHHhhc
Confidence 478999999999999999999999999999999764321 3367999999999999999996 9
Q ss_pred cceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCce
Q 015686 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG 383 (402)
||..|.|+.|.|.++.+... ....++|||+|||..+++++|+.+|..| |.|..++|+.+..+|.++|
T Consensus 66 ~g~~l~g~~i~v~~a~~~~~---------~~~~~~l~v~~l~~~~~~~~l~~~f~~~----G~i~~~~~~~~~~~~~~~g 132 (352)
T TIGR01661 66 NGLRLQNKTIKVSYARPSSD---------SIKGANLYVSGLPKTMTQHELESIFSPF----GQIITSRILSDNVTGLSKG 132 (352)
T ss_pred ccEEECCeeEEEEeeccccc---------ccccceEEECCccccCCHHHHHHHHhcc----CCEEEEEEEecCCCCCcCc
Confidence 99999999999998864321 1235689999999999999999999999 9999999999988899999
Q ss_pred EEEEEecCHHHHHHHHHhC
Q 015686 384 IAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 384 ~aFV~F~s~e~A~~Al~~l 402 (402)
||||+|.+.++|..||+.|
T Consensus 133 ~~fv~f~~~~~A~~ai~~l 151 (352)
T TIGR01661 133 VGFIRFDKRDEADRAIKTL 151 (352)
T ss_pred EEEEEECCHHHHHHHHHHh
Confidence 9999999999999999764
No 3
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=1.6e-25 Score=231.44 Aligned_cols=162 Identities=23% Similarity=0.327 Sum_probs=136.2
Q ss_pred cCCCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHH
Q 015686 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (402)
Q Consensus 220 ~e~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~ 299 (402)
+.....++|||+|||+.+++++|+++|++||.|..|+|+.+.. + +.++|||||+|.+.++|.+
T Consensus 84 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~--~---------------~~skg~afVeF~~~e~A~~ 146 (457)
T TIGR01622 84 EAERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRN--S---------------RRSKGVAYVEFYDVESVIK 146 (457)
T ss_pred ccccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCC--C---------------CCcceEEEEEECCHHHHHH
Confidence 3445578999999999999999999999999999999965321 1 2367999999999999999
Q ss_pred HHhccceEEcceeeccccCCCccccccC---CCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecC
Q 015686 300 ALAFNMAVIGGNHIRLDRACPPRKKLKG---EDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHP 376 (402)
Q Consensus 300 Al~lng~~l~Gr~I~V~~a~~~~k~~~~---~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~ 376 (402)
||.|+|..|.|+.|.|..+......... ......+..++|||+|||+.+++++|+++|..| |.|..|.|++++
T Consensus 147 Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~----G~i~~v~~~~d~ 222 (457)
T TIGR01622 147 ALALTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPF----GDIEDVQLHRDP 222 (457)
T ss_pred HHHhCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcC
Confidence 9999999999999999876543221111 001112346899999999999999999999999 999999999999
Q ss_pred CCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 377 HMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 377 ~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.+|.++|||||+|.+.++|..||..|
T Consensus 223 ~~g~~~g~afV~f~~~e~A~~A~~~l 248 (457)
T TIGR01622 223 ETGRSKGFGFIQFHDAEEAKEALEVM 248 (457)
T ss_pred CCCccceEEEEEECCHHHHHHHHHhc
Confidence 98999999999999999999999865
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.93 E-value=1.1e-25 Score=237.39 Aligned_cols=158 Identities=17% Similarity=0.319 Sum_probs=132.6
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..++|||||||+++++++|+.+|..||.|.+|+|+.++. + ++++|||||+|.+.++|+.||.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~--T---------------gkskGfAFVeF~s~e~A~~Ai~~ 168 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPA--T---------------GKHKGFAFVEYEVPEAAQLALEQ 168 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCC--C---------------CCcCCeEEEEeCcHHHHHHHHHh
Confidence 468999999999999999999999999999999966432 1 2367999999999999999995
Q ss_pred ccceEEcceeeccccCCCccccccC--CCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCC
Q 015686 303 FNMAVIGGNHIRLDRACPPRKKLKG--EDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV 380 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~~~--~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~ 380 (402)
|||..|.||.|.|.+.......... .........++|||+|||+.+++++|+++|+.| |.|.+|+|++|+.+|.
T Consensus 169 lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~F----G~I~svrl~~D~~tgk 244 (612)
T TIGR01645 169 MNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAF----GEIVKCQLARAPTGRG 244 (612)
T ss_pred cCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhc----CCeeEEEEEecCCCCC
Confidence 9999999999999865432111000 001112245799999999999999999999999 9999999999999999
Q ss_pred CceEEEEEecCHHHHHHHHHhC
Q 015686 381 GKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 381 skG~aFV~F~s~e~A~~Al~~l 402 (402)
++|||||+|.+.++|..||+.|
T Consensus 245 sKGfGFVeFe~~e~A~kAI~am 266 (612)
T TIGR01645 245 HKGYGFIEYNNLQSQSEAIASM 266 (612)
T ss_pred cCCeEEEEECCHHHHHHHHHHh
Confidence 9999999999999999999764
No 5
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.91 E-value=1.1e-23 Score=220.42 Aligned_cols=156 Identities=19% Similarity=0.363 Sum_probs=126.0
Q ss_pred cCCCcccEEEEeCCCCcCcHHHHHHHhhhcC------------CeeEEEEeeecccCCCCCccchhhhhhcccCCCcceE
Q 015686 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFG------------EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHA 287 (402)
Q Consensus 220 ~e~~~~~tVfVgNLP~~vtee~L~~~F~~~G------------~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~a 287 (402)
......++|||||||+++|+++|..+|..|+ .|..+.+ ..++|||
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-----------------------~~~kg~a 226 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-----------------------NKEKNFA 226 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-----------------------CCCCCEE
Confidence 3455679999999999999999999999862 3333332 2256899
Q ss_pred EEEEeechhHHHHHhccceEEcceeeccccCCCccccc--------cC------------CCCCccCCcceeEecCCCCC
Q 015686 288 YIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKL--------KG------------EDAPLYDIKKTVFVGNLPFD 347 (402)
Q Consensus 288 FV~F~s~e~A~~Al~lng~~l~Gr~I~V~~a~~~~k~~--------~~------------~~~~~~~~~~tLfV~NLp~~ 347 (402)
||+|.+.++|..||.|||..|.|+.|.|.......... .. .........++|||+|||+.
T Consensus 227 fVeF~~~e~A~~Al~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~ 306 (509)
T TIGR01642 227 FLEFRTVEEATFAMALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLY 306 (509)
T ss_pred EEEeCCHHHHhhhhcCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCC
Confidence 99999999999999999999999999997543211000 00 00011234679999999999
Q ss_pred CCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 348 VKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 348 ~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
+++++|+++|..| |.|..+.|++++.+|.++|||||+|.+.++|..||..|
T Consensus 307 ~~~~~l~~~f~~~----G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l 357 (509)
T TIGR01642 307 LGEDQIKELLESF----GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAAL 357 (509)
T ss_pred CCHHHHHHHHHhc----CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHc
Confidence 9999999999999 99999999999999999999999999999999999765
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.91 E-value=1.4e-23 Score=209.49 Aligned_cols=157 Identities=23% Similarity=0.297 Sum_probs=127.1
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
.++|||+|||+.+++++|+.+|..||.|..++++.... . +.++|||||+|.+.++|+.||. |
T Consensus 89 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~--~---------------~~~~g~~fv~f~~~~~A~~ai~~l 151 (352)
T TIGR01661 89 GANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNV--T---------------GLSKGVGFIRFDKRDEADRAIKTL 151 (352)
T ss_pred cceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCC--C---------------CCcCcEEEEEECCHHHHHHHHHHh
Confidence 46799999999999999999999999999998865321 1 2356999999999999999995 9
Q ss_pred cceEEcc--eeeccccCCCcccccc--------------CCC--------------------------------------
Q 015686 304 NMAVIGG--NHIRLDRACPPRKKLK--------------GED-------------------------------------- 329 (402)
Q Consensus 304 ng~~l~G--r~I~V~~a~~~~k~~~--------------~~~-------------------------------------- 329 (402)
||..+.| +.|.|.++..+..... ...
T Consensus 152 ~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (352)
T TIGR01661 152 NGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQ 231 (352)
T ss_pred CCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhh
Confidence 9998877 5677776643321000 000
Q ss_pred -------------CC------------------ccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCC
Q 015686 330 -------------AP------------------LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM 378 (402)
Q Consensus 330 -------------~~------------------~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~ 378 (402)
.+ ......+|||+|||+.+++++|+++|++| |.|.+|+|++|+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~f----G~v~~v~i~~d~~t 307 (352)
T TIGR01661 232 QHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPF----GAVQNVKIIRDLTT 307 (352)
T ss_pred hcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEeEcCCC
Confidence 00 00112369999999999999999999999 99999999999999
Q ss_pred CCCceEEEEEecCHHHHHHHHHhC
Q 015686 379 RVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 379 g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
|.++|||||+|.+.++|..||..|
T Consensus 308 ~~skG~aFV~F~~~~~A~~Ai~~l 331 (352)
T TIGR01661 308 NQCKGYGFVSMTNYDEAAMAILSL 331 (352)
T ss_pred CCccceEEEEECCHHHHHHHHHHh
Confidence 999999999999999999999865
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.90 E-value=1.9e-23 Score=221.73 Aligned_cols=147 Identities=21% Similarity=0.328 Sum_probs=127.9
Q ss_pred EEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-ccc
Q 015686 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNM 305 (402)
Q Consensus 227 tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-lng 305 (402)
+|||||||+++|+++|+++|+.||.|.+|+|+++..+ ++++|||||.|.+.++|+.||. +|+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t-----------------~~s~G~afV~F~~~~~A~~Al~~ln~ 64 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVT-----------------RRSLGYGYVNFQNPADAERALETMNF 64 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC-----------------CCcceEEEEEECCHHHHHHHHHHhCC
Confidence 6999999999999999999999999999999765321 2366999999999999999995 999
Q ss_pred eEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEE
Q 015686 306 AVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIA 385 (402)
Q Consensus 306 ~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~a 385 (402)
..|.|+.|+|.++...... ......+|||+|||.++++++|+++|+.| |.|..|+|+.+ .+|.++|||
T Consensus 65 ~~i~gk~i~i~~s~~~~~~-------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~----G~i~~~~i~~~-~~g~skg~a 132 (562)
T TIGR01628 65 KRLGGKPIRIMWSQRDPSL-------RRSGVGNIFVKNLDKSVDNKALFDTFSKF----GNILSCKVATD-ENGKSRGYG 132 (562)
T ss_pred CEECCeeEEeecccccccc-------cccCCCceEEcCCCccCCHHHHHHHHHhc----CCcceeEeeec-CCCCcccEE
Confidence 9999999999987532211 12235689999999999999999999999 99999999998 568899999
Q ss_pred EEEecCHHHHHHHHHhC
Q 015686 386 YVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 386 FV~F~s~e~A~~Al~~l 402 (402)
||+|.+.++|..||+.|
T Consensus 133 fV~F~~~e~A~~Ai~~l 149 (562)
T TIGR01628 133 FVHFEKEESAKAAIQKV 149 (562)
T ss_pred EEEECCHHHHHHHHHHh
Confidence 99999999999999653
No 8
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=8.1e-23 Score=192.15 Aligned_cols=151 Identities=21% Similarity=0.362 Sum_probs=129.9
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
..-|||+.|...|+-+.|++.|..||+|..++|+++.. +++++|||||.|.+.++|+.||. |
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~-----------------T~KsKGYgFVSf~~k~dAEnAI~~M 124 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMN-----------------TGKSKGYGFVSFPNKEDAENAIQQM 124 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeeccc-----------------CCcccceeEEeccchHHHHHHHHHh
Confidence 45599999999999999999999999999999977542 23477999999999999999995 9
Q ss_pred cceEEcceeeccccCCCccccccCCC-------CCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecC
Q 015686 304 NMAVIGGNHIRLDRACPPRKKLKGED-------APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHP 376 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~-------~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~ 376 (402)
||..|.+|.|+-.++.++.....+.. ....+..++|||||++.-+++++|++.|++| |.|..|||.++
T Consensus 125 nGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~f----G~I~EVRvFk~- 199 (321)
T KOG0148|consen 125 NGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPF----GPIQEVRVFKD- 199 (321)
T ss_pred CCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccC----CcceEEEEecc-
Confidence 99999999999999987642221110 2224567999999999999999999999999 99999999988
Q ss_pred CCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 377 HMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 377 ~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
+||+||.|.+++.|..||..|
T Consensus 200 -----qGYaFVrF~tkEaAahAIv~m 220 (321)
T KOG0148|consen 200 -----QGYAFVRFETKEAAAHAIVQM 220 (321)
T ss_pred -----cceEEEEecchhhHHHHHHHh
Confidence 789999999999999998643
No 9
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=3.9e-22 Score=201.93 Aligned_cols=154 Identities=30% Similarity=0.435 Sum_probs=129.0
Q ss_pred cEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-cc
Q 015686 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FN 304 (402)
Q Consensus 226 ~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-ln 304 (402)
..|.|+||||.+.+.+|..+|+.||.|..|.|++-+ . +.-+|||||.|....+|..||. +|
T Consensus 118 ~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-----d-------------gklcGFaFV~fk~~~dA~~Al~~~N 179 (678)
T KOG0127|consen 118 WRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-----D-------------GKLCGFAFVQFKEKKDAEKALEFFN 179 (678)
T ss_pred ceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-----C-------------CCccceEEEEEeeHHHHHHHHHhcc
Confidence 569999999999999999999999999999884311 1 2234999999999999999997 99
Q ss_pred ceEEcceeeccccCCCccccc---------------------------------------------cC------------
Q 015686 305 MAVIGGNHIRLDRACPPRKKL---------------------------------------------KG------------ 327 (402)
Q Consensus 305 g~~l~Gr~I~V~~a~~~~k~~---------------------------------------------~~------------ 327 (402)
|..|.||+|.|+|+.+...-. .+
T Consensus 180 ~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~E 259 (678)
T KOG0127|consen 180 GNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESE 259 (678)
T ss_pred CceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccc
Confidence 999999999999987531000 00
Q ss_pred ------CCC--C----------------ccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCce
Q 015686 328 ------EDA--P----------------LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (402)
Q Consensus 328 ------~~~--~----------------~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG 383 (402)
++. + ...-..+|||+||||.+|+++|.++|+.| |.|.++.|+.++.||.++|
T Consensus 260 ee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskF----G~v~ya~iV~~k~T~~skG 335 (678)
T KOG0127|consen 260 EEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKF----GEVKYAIIVKDKDTGHSKG 335 (678)
T ss_pred ccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhh----ccceeEEEEeccCCCCccc
Confidence 000 0 00113799999999999999999999999 9999999999999999999
Q ss_pred EEEEEecCHHHHHHHHHh
Q 015686 384 IAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 384 ~aFV~F~s~e~A~~Al~~ 401 (402)
.|||.|.+..+|+.||.+
T Consensus 336 tAFv~Fkt~~~~~~ci~~ 353 (678)
T KOG0127|consen 336 TAFVKFKTQIAAQNCIEA 353 (678)
T ss_pred ceEEEeccHHHHHHHHHh
Confidence 999999999999999986
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.88 E-value=7.4e-22 Score=206.26 Aligned_cols=147 Identities=20% Similarity=0.238 Sum_probs=122.3
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh--
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-- 302 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-- 302 (402)
+++|||+|||+++++++|+++|+.||.|.+|.|+. ++|||||+|.+.++|+.||.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-----------------------~k~~afVef~~~e~A~~Ai~~~ 58 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-----------------------GKRQALVEFEDEESAKACVNFA 58 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-----------------------CCCEEEEEeCchHHHHHHHHHh
Confidence 68999999999999999999999999999998842 34799999999999999996
Q ss_pred -ccceEEcceeeccccCCCccccccCC---CCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCC
Q 015686 303 -FNMAVIGGNHIRLDRACPPRKKLKGE---DAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM 378 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~~k~~~~~---~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~ 378 (402)
+++..|.|+.|.|.++..+....... .........+|||+||++.+++++|+++|+.| |.|..|.|+++..
T Consensus 59 ~~~~~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~----G~V~~v~i~~~~~- 133 (481)
T TIGR01649 59 TSVPIYIRGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPY----GKVLRIVTFTKNN- 133 (481)
T ss_pred hcCCceEcCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhcc----CCEEEEEEEecCC-
Confidence 58899999999999986543211110 01111234579999999999999999999999 9999999987632
Q ss_pred CCCceEEEEEecCHHHHHHHHHhC
Q 015686 379 RVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 379 g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.|+|||+|.++++|.+|++.|
T Consensus 134 ---~~~afVef~~~~~A~~A~~~L 154 (481)
T TIGR01649 134 ---VFQALVEFESVNSAQHAKAAL 154 (481)
T ss_pred ---ceEEEEEECCHHHHHHHHHHh
Confidence 479999999999999999754
No 11
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=2.5e-22 Score=199.56 Aligned_cols=141 Identities=24% Similarity=0.395 Sum_probs=123.4
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
.+-||||.||.|+.+++|.-+|++.|+|..+|||+++. + |.+||||||.|.+.+.|+.|++ |
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~--s---------------G~nRGYAFVtf~~Ke~Aq~Aik~l 145 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPF--S---------------GDNRGYAFVTFCTKEEAQEAIKEL 145 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeeccc--C---------------CCCcceEEEEeecHHHHHHHHHHh
Confidence 56799999999999999999999999999999998764 2 3467999999999999999996 9
Q ss_pred cceEE-cceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCC-CCCC
Q 015686 304 NMAVI-GGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPH-MRVG 381 (402)
Q Consensus 304 ng~~l-~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~-~g~s 381 (402)
|++.| .|+.|.|+.+. .+++|||||||.++++++|.+.|...+. .|..|.|+..+. ..++
T Consensus 146 nn~Eir~GK~igvc~Sv---------------an~RLFiG~IPK~k~keeIlee~~kVte---GVvdVivy~~p~dk~KN 207 (506)
T KOG0117|consen 146 NNYEIRPGKLLGVCVSV---------------ANCRLFIGNIPKTKKKEEILEEMKKVTE---GVVDVIVYPSPDDKTKN 207 (506)
T ss_pred hCccccCCCEeEEEEee---------------ecceeEeccCCccccHHHHHHHHHhhCC---CeeEEEEecCccccccc
Confidence 99987 68999998875 3588999999999999999999999854 477777766653 5789
Q ss_pred ceEEEEEecCHHHHHHHHH
Q 015686 382 KGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 382 kG~aFV~F~s~e~A~~Al~ 400 (402)
||||||+|.+|..|..|-.
T Consensus 208 RGFaFveYe~H~~Aa~aRr 226 (506)
T KOG0117|consen 208 RGFAFVEYESHRAAAMARR 226 (506)
T ss_pred cceEEEEeecchhHHHHHh
Confidence 9999999999999988754
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.88 E-value=6.5e-22 Score=210.05 Aligned_cols=155 Identities=22% Similarity=0.337 Sum_probs=130.3
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
.++|||+|||+++++++|+.+|+.||.|.++.++... . +.++|||||.|.+.++|..|+. |
T Consensus 178 ~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~---~---------------g~~~G~afV~F~~~e~A~~Av~~l 239 (562)
T TIGR01628 178 FTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG---S---------------GRSRGFAFVNFEKHEDAAKAVEEM 239 (562)
T ss_pred CCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC---C---------------CCcccEEEEEECCHHHHHHHHHHh
Confidence 4679999999999999999999999999999886532 1 2356999999999999999995 9
Q ss_pred cceEEc----ceeeccccCCCcccccc---------CCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEE
Q 015686 304 NMAVIG----GNHIRLDRACPPRKKLK---------GEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAV 370 (402)
Q Consensus 304 ng~~l~----Gr~I~V~~a~~~~k~~~---------~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~v 370 (402)
||..|. |+.|.|.++........ ...........+|||+||+..+++++|+++|+.| |.|..|
T Consensus 240 ~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~----G~i~~~ 315 (562)
T TIGR01628 240 NGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSEC----GEITSA 315 (562)
T ss_pred CCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhc----CCeEEE
Confidence 999999 99999988765432210 0001112345789999999999999999999999 999999
Q ss_pred EEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 371 RVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 371 rI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
+|+.| .+|.++|||||+|.+.++|.+||..|
T Consensus 316 ~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~ 346 (562)
T TIGR01628 316 KVMLD-EKGVSRGFGFVCFSNPEEANRAVTEM 346 (562)
T ss_pred EEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHh
Confidence 99999 77999999999999999999999754
No 13
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.88 E-value=1.6e-22 Score=180.70 Aligned_cols=149 Identities=23% Similarity=0.409 Sum_probs=130.3
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
..|||||||+..++++.|+++|-++|+|.++.++++..++ ..+|||||+|.++++|+.|++ |
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~-----------------~~qGygF~Ef~~eedadYAikil 71 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQ-----------------KHQGYGFAEFRTEEDADYAIKIL 71 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcc-----------------cccceeEEEEechhhhHHHHHHH
Confidence 5899999999999999999999999999999986655433 245999999999999999998 9
Q ss_pred cceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEE-EEeecCCCCCCc
Q 015686 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAV-RVIRHPHMRVGK 382 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~v-rI~~d~~~g~sk 382 (402)
|+..|.|++|+|..+....+. ......|||+||.+.+++..|++.|+.| |.+... .|++|+.+|.++
T Consensus 72 n~VkLYgrpIrv~kas~~~~n--------l~vganlfvgNLd~~vDe~~L~dtFsaf----G~l~~~P~i~rd~~tg~~~ 139 (203)
T KOG0131|consen 72 NMVKLYGRPIRVNKASAHQKN--------LDVGANLFVGNLDPEVDEKLLYDTFSAF----GVLISPPKIMRDPDTGNPK 139 (203)
T ss_pred HHHHhcCceeEEEeccccccc--------ccccccccccccCcchhHHHHHHHHHhc----cccccCCcccccccCCCCC
Confidence 999999999999988632222 2234789999999999999999999999 777654 799999999999
Q ss_pred eEEEEEecCHHHHHHHHHhC
Q 015686 383 GIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 383 G~aFV~F~s~e~A~~Al~~l 402 (402)
|||||.|.+.+.+.+||.+|
T Consensus 140 ~~g~i~~~sfeasd~ai~s~ 159 (203)
T KOG0131|consen 140 GFGFINYASFEASDAAIGSM 159 (203)
T ss_pred CCeEEechhHHHHHHHHHHh
Confidence 99999999999999999875
No 14
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.87 E-value=1.5e-21 Score=205.69 Aligned_cols=142 Identities=21% Similarity=0.332 Sum_probs=117.7
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
.++|||+|||+++++++|+.+|++||.|..|+|+++ .+ ++++|||||+|.+.++|+.||. |
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D---~s---------------G~sRGfaFV~F~~~e~A~~Ai~~l 119 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD---FS---------------GQNRGYAFVTFCGKEEAKEAVKLL 119 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC---CC---------------CCccceEEEEeCCHHHHHHHHHHc
Confidence 588999999999999999999999999999998664 12 2367999999999999999996 9
Q ss_pred cceEEc-ceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCc
Q 015686 304 NMAVIG-GNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGK 382 (402)
Q Consensus 304 ng~~l~-Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~sk 382 (402)
|+..|. |+.|.|..+. ..++|||+|||.++++++|.++|..+.. |.+..|.+......++++
T Consensus 120 ng~~i~~Gr~l~V~~S~---------------~~~rLFVgNLP~~~TeeeL~eeFskv~e--gvv~vIv~~~~~~kgKnR 182 (578)
T TIGR01648 120 NNYEIRPGRLLGVCISV---------------DNCRLFVGGIPKNKKREEILEEFSKVTE--GVVDVIVYHSAADKKKNR 182 (578)
T ss_pred CCCeecCCccccccccc---------------cCceeEeecCCcchhhHHHHHHhhcccC--CceEEEEeccccccCccC
Confidence 999885 7887776653 2578999999999999999999999832 333333333334567889
Q ss_pred eEEEEEecCHHHHHHHHHh
Q 015686 383 GIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 383 G~aFV~F~s~e~A~~Al~~ 401 (402)
|||||+|.++++|..|++.
T Consensus 183 GFAFVeF~s~edAa~Airk 201 (578)
T TIGR01648 183 GFAFVEYESHRAAAMARRK 201 (578)
T ss_pred ceEEEEcCCHHHHHHHHHH
Confidence 9999999999999999864
No 15
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=8e-22 Score=195.16 Aligned_cols=151 Identities=18% Similarity=0.349 Sum_probs=128.6
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
+.+.-++|||.||..++|.+|+.+|++||.|..|.|++++.+ +.++|||||.|.+.++|..|+
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t-----------------~~s~gcCFv~~~trk~a~~a~ 93 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKST-----------------GQSKGCCFVKYYTRKEADEAI 93 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeeccccc-----------------CcccceEEEEeccHHHHHHHH
Confidence 344677999999999999999999999999999999765532 346799999999999999999
Q ss_pred h-ccc-eEEcc--eeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCC
Q 015686 302 A-FNM-AVIGG--NHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPH 377 (402)
Q Consensus 302 ~-lng-~~l~G--r~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~ 377 (402)
. ||. ..|-| ..|.|.++.....+ ....+.||||-|+..+++.+|+.+|..| |.|+.|+|++|+
T Consensus 94 ~Alhn~ktlpG~~~pvqvk~Ad~E~er--------~~~e~KLFvg~lsK~~te~evr~iFs~f----G~Ied~~ilrd~- 160 (510)
T KOG0144|consen 94 NALHNQKTLPGMHHPVQVKYADGERER--------IVEERKLFVGMLSKQCTENEVREIFSRF----GHIEDCYILRDP- 160 (510)
T ss_pred HHhhcccccCCCCcceeecccchhhhc--------cccchhhhhhhccccccHHHHHHHHHhh----Cccchhhheecc-
Confidence 5 554 46766 56777777543322 1346889999999999999999999999 999999999994
Q ss_pred CCCCceEEEEEecCHHHHHHHHHhC
Q 015686 378 MRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 378 ~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.|.+||||||.|.+.+.|..||+.|
T Consensus 161 ~~~sRGcaFV~fstke~A~~Aika~ 185 (510)
T KOG0144|consen 161 DGLSRGCAFVKFSTKEMAVAAIKAL 185 (510)
T ss_pred cccccceeEEEEehHHHHHHHHHhh
Confidence 5999999999999999999999976
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.86 E-value=5.6e-21 Score=199.66 Aligned_cols=151 Identities=16% Similarity=0.209 Sum_probs=123.2
Q ss_pred cccEEEEeCCCC-cCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 224 LLRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 224 ~~~tVfVgNLP~-~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
..++|||+|||+ .+++++|+.+|+.||.|.+|+|+.. .+|||||+|.+.++|..||.
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~----------------------~~g~afV~f~~~~~A~~Ai~ 331 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN----------------------KKETALIEMADPYQAQLALT 331 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC----------------------CCCEEEEEECCHHHHHHHHH
Confidence 468999999998 6999999999999999999998542 13799999999999999996
Q ss_pred -ccceEEcceeeccccCCCccccc-------cC--------CC-------------CCccCCcceeEecCCCCCCCHHHH
Q 015686 303 -FNMAVIGGNHIRLDRACPPRKKL-------KG--------ED-------------APLYDIKKTVFVGNLPFDVKDEEI 353 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~~k~~-------~~--------~~-------------~~~~~~~~tLfV~NLp~~~teedL 353 (402)
|||..|.|+.|.|.++....... .+ .. ....+++.+|||+|||.++++++|
T Consensus 332 ~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L 411 (481)
T TIGR01649 332 HLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDL 411 (481)
T ss_pred HhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHH
Confidence 99999999999998875321000 00 00 011246789999999999999999
Q ss_pred HHHhccCCCCCCC--eEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 354 YQLFCGLNDLESS--VEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 354 ~~~F~~f~~~~G~--I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
+++|..| |. |..|++.... +..+|+|||+|.+.++|..||..|
T Consensus 412 ~~lF~~~----G~~~i~~ik~~~~~--~~~~~~gfVeF~~~e~A~~Al~~l 456 (481)
T TIGR01649 412 KELFAEN----GVHKVKKFKFFPKD--NERSKMGLLEWESVEDAVEALIAL 456 (481)
T ss_pred HHHHHhc----CCccceEEEEecCC--CCcceeEEEEcCCHHHHHHHHHHh
Confidence 9999999 87 8888886542 236899999999999999999865
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.86 E-value=9.1e-21 Score=198.43 Aligned_cols=158 Identities=18% Similarity=0.211 Sum_probs=125.3
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..++|||+|||+.+++++|+++|+.||.|..+.|+..+. .+.++|||||+|.+.++|..||.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~-----------------~g~~~g~afv~f~~~~~a~~A~~~ 356 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIA-----------------TGLSKGYAFCEYKDPSVTDVAIAA 356 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC-----------------CCCcCeEEEEEECCHHHHHHHHHH
Confidence 357899999999999999999999999999998855321 23467999999999999999995
Q ss_pred ccceEEcceeeccccCCCccccccCCC-------------------CCccCCcceeEecCCCCCC----------CHHHH
Q 015686 303 FNMAVIGGNHIRLDRACPPRKKLKGED-------------------APLYDIKKTVFVGNLPFDV----------KDEEI 353 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~~~~~-------------------~~~~~~~~tLfV~NLp~~~----------teedL 353 (402)
|||..|.|+.|.|.++........... .....+..+|+|.||.... ..++|
T Consensus 357 l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl 436 (509)
T TIGR01642 357 LNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDV 436 (509)
T ss_pred cCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHH
Confidence 999999999999998764321110000 0012357889999996431 23679
Q ss_pred HHHhccCCCCCCCeEEEEEeec---CCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 354 YQLFCGLNDLESSVEAVRVIRH---PHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 354 ~~~F~~f~~~~G~I~~vrI~~d---~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
+++|+.| |.|..|.|+++ ..++.+.|+|||+|.++++|..||..|
T Consensus 437 ~~~f~~~----G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~l 484 (509)
T TIGR01642 437 KTEFSKY----GPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGM 484 (509)
T ss_pred HHHHHhc----CCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHc
Confidence 9999999 99999999875 234567899999999999999999876
No 18
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=8.3e-21 Score=192.35 Aligned_cols=156 Identities=22% Similarity=0.327 Sum_probs=129.7
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
..||||++||+.++.++|..+|+.+|+|..+-+.+ +.+. +.++|||||.|.-.++++.|++ .
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt----~~gs-------------~~~RGfgfVtFam~ED~qrA~~e~ 67 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVT----NKGS-------------SEKRGFGFVTFAMEEDVQRALAET 67 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEec----CCCc-------------ccccCccceeeehHhHHHHHHHHh
Confidence 37999999999999999999999999999988844 2222 2377999999999999999996 8
Q ss_pred cceEEcceeeccccCCCccccc---cCCC--------------CCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCC
Q 015686 304 NMAVIGGNHIRLDRACPPRKKL---KGED--------------APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESS 366 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~---~~~~--------------~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~ 366 (402)
++..|.||.|+|..+.++.... .+.. .....+..+|.|+||||.+...+|+.+|+.| |.
T Consensus 68 ~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~----G~ 143 (678)
T KOG0127|consen 68 EQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNF----GK 143 (678)
T ss_pred hcCcccceecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhc----ce
Confidence 9999999999999987642221 1100 0012347899999999999999999999999 99
Q ss_pred eEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 367 VEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 367 I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
|..|.|++.++.+.+ |||||+|....+|..||+-|
T Consensus 144 V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~ 178 (678)
T KOG0127|consen 144 VVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFF 178 (678)
T ss_pred EEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhc
Confidence 999999988775555 99999999999999999753
No 19
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.83 E-value=1.1e-20 Score=196.71 Aligned_cols=157 Identities=21% Similarity=0.295 Sum_probs=131.6
Q ss_pred EEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-ccce
Q 015686 228 IFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNMA 306 (402)
Q Consensus 228 VfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-lng~ 306 (402)
|||.||++++|.+.|..+|...|.|.++.|...+.... ...|+|||||+|.+.++|+.|++ |+|+
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~--------------k~lSmGfgFVEF~~~e~A~~a~k~lqgt 583 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPAN--------------KYLSMGFGFVEFAKPESAQAALKALQGT 583 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccc--------------cccccceeEEEecCHHHHHHHHHHhcCc
Confidence 99999999999999999999999999998854332111 12378999999999999999996 9999
Q ss_pred EEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEE
Q 015686 307 VIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAY 386 (402)
Q Consensus 307 ~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aF 386 (402)
.|.|+.|.|.++........+...+.....+.|+|+|||+..+..+|+++|..| |.|..|+|+.....+.++||||
T Consensus 584 vldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aF----GqlksvRlPKK~~k~a~rGF~F 659 (725)
T KOG0110|consen 584 VLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAF----GQLKSVRLPKKIGKGAHRGFGF 659 (725)
T ss_pred eecCceEEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcc----cceeeeccchhhcchhhcccee
Confidence 999999999998732222222222223346799999999999999999999999 9999999998866778899999
Q ss_pred EEecCHHHHHHHHHhC
Q 015686 387 VLFKTRLPIWLLRDVT 402 (402)
Q Consensus 387 V~F~s~e~A~~Al~~l 402 (402)
|.|-++.+|.+|+++|
T Consensus 660 v~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 660 VDFLTPREAKNAFDAL 675 (725)
T ss_pred eeccCcHHHHHHHHhh
Confidence 9999999999999875
No 20
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=2.4e-20 Score=174.62 Aligned_cols=148 Identities=18% Similarity=0.304 Sum_probs=132.7
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
...|.|.-||..+|+++|+.+|...|+|.+|++++++++ |++-|||||-|..+.+|++|+. |
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKit-----------------GqSLGYGFVNYv~p~DAe~Aintl 103 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKIT-----------------GQSLGYGFVNYVRPKDAEKAINTL 103 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeecccc-----------------ccccccceeeecChHHHHHHHhhh
Confidence 355888889999999999999999999999999876542 4577999999999999999996 9
Q ss_pred cceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCce
Q 015686 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG 383 (402)
||..|....|.|.++.+.... -....|||.+||..+|..+|.++|++| |.|..-||+.|..+|.+||
T Consensus 104 NGLrLQ~KTIKVSyARPSs~~---------Ik~aNLYvSGlPktMtqkelE~iFs~f----GrIItSRiL~dqvtg~srG 170 (360)
T KOG0145|consen 104 NGLRLQNKTIKVSYARPSSDS---------IKDANLYVSGLPKTMTQKELEQIFSPF----GRIITSRILVDQVTGLSRG 170 (360)
T ss_pred cceeeccceEEEEeccCChhh---------hcccceEEecCCccchHHHHHHHHHHh----hhhhhhhhhhhcccceecc
Confidence 999999999999999764322 224579999999999999999999999 9999999999999999999
Q ss_pred EEEEEecCHHHHHHHHHhC
Q 015686 384 IAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 384 ~aFV~F~s~e~A~~Al~~l 402 (402)
.|||.|....+|..||+.|
T Consensus 171 VgFiRFDKr~EAe~AIk~l 189 (360)
T KOG0145|consen 171 VGFIRFDKRIEAEEAIKGL 189 (360)
T ss_pred eeEEEecchhHHHHHHHhc
Confidence 9999999999999999865
No 21
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.79 E-value=1.7e-18 Score=182.77 Aligned_cols=148 Identities=24% Similarity=0.313 Sum_probs=115.5
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCC-eeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGE-IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~-I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
.++|||+|||+++++++|.++|..++. |..+.++.. ..+ ..+++|||||+|.+.++|..|+.
T Consensus 138 ~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~-~~~---------------kgKnRGFAFVeF~s~edAa~Airk 201 (578)
T TIGR01648 138 NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHS-AAD---------------KKKNRGFAFVEYESHRAAAMARRK 201 (578)
T ss_pred CceeEeecCCcchhhHHHHHHhhcccCCceEEEEecc-ccc---------------cCccCceEEEEcCCHHHHHHHHHH
Confidence 688999999999999999999999863 434433211 111 12367999999999999999995
Q ss_pred cc-c-eEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCC
Q 015686 303 FN-M-AVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV 380 (402)
Q Consensus 303 ln-g-~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~ 380 (402)
|+ + ..+.|+.|.|.++.+..... .......++|||+|||..+++++|+++|+.|.. |.|..|.++
T Consensus 202 L~~gki~l~Gr~I~VdwA~p~~~~d----~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~--G~I~rV~~~------- 268 (578)
T TIGR01648 202 LMPGRIQLWGHVIAVDWAEPEEEVD----EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKP--GKVERVKKI------- 268 (578)
T ss_pred hhccceEecCceEEEEeeccccccc----ccccccccEEEEeCCCCCCCHHHHHHHHHhcCC--CceEEEEee-------
Confidence 54 3 46899999999986543211 112334578999999999999999999999843 789999876
Q ss_pred CceEEEEEecCHHHHHHHHHhC
Q 015686 381 GKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 381 skG~aFV~F~s~e~A~~Al~~l 402 (402)
+|||||+|.++++|.+||+.|
T Consensus 269 -rgfAFVeF~s~e~A~kAi~~l 289 (578)
T TIGR01648 269 -RDYAFVHFEDREDAVKAMDEL 289 (578)
T ss_pred -cCeEEEEeCCHHHHHHHHHHh
Confidence 459999999999999999754
No 22
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=2.2e-18 Score=171.62 Aligned_cols=147 Identities=24% Similarity=0.316 Sum_probs=120.9
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcC-CeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFG-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G-~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
.++.|||||||...++++|++.|.+.+ -|..|.|...+. + ..+|||||||+|.++..|..|-.
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~-d---------------k~KNRGFaFveYe~H~~Aa~aRr 226 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPD-D---------------KTKNRGFAFVEYESHRAAAMARR 226 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCcc-c---------------cccccceEEEEeecchhHHHHHh
Confidence 578899999999999999999999987 355666543332 1 13478999999999999998874
Q ss_pred --ccce-EEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCC
Q 015686 303 --FNMA-VIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMR 379 (402)
Q Consensus 303 --lng~-~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g 379 (402)
++|. .+.|..|.|+|+.+....- ......-..|||+||+.++|++.|+.+|..| |.|+.|..++|
T Consensus 227 Kl~~g~~klwgn~~tVdWAep~~e~d----ed~ms~VKvLYVRNL~~~tTeE~lk~~F~~~----G~veRVkk~rD---- 294 (506)
T KOG0117|consen 227 KLMPGKIKLWGNAITVDWAEPEEEPD----EDTMSKVKVLYVRNLMESTTEETLKKLFNEF----GKVERVKKPRD---- 294 (506)
T ss_pred hccCCceeecCCcceeeccCcccCCC----hhhhhheeeeeeeccchhhhHHHHHHHHHhc----cceEEeecccc----
Confidence 6665 7899999999997653211 1123345789999999999999999999999 99999998877
Q ss_pred CCceEEEEEecCHHHHHHHHHhC
Q 015686 380 VGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 380 ~skG~aFV~F~s~e~A~~Al~~l 402 (402)
||||+|.+.++|.+||+.|
T Consensus 295 ----YaFVHf~eR~davkAm~~~ 313 (506)
T KOG0117|consen 295 ----YAFVHFAEREDAVKAMKET 313 (506)
T ss_pred ----eeEEeecchHHHHHHHHHh
Confidence 9999999999999999864
No 23
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=5.6e-19 Score=171.86 Aligned_cols=155 Identities=17% Similarity=0.331 Sum_probs=128.2
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
-|.||||.|.|.+.++.|+..|..||+|.+|.+-.++.+ +.++|||||+|.-++.|+.|++ |
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T-----------------~kHKgFAFVEYEvPEaAqLAlEqM 175 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPAT-----------------GKHKGFAFVEYEVPEAAQLALEQM 175 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeeccccccc-----------------ccccceEEEEEeCcHHHHHHHHHh
Confidence 578999999999999999999999999999998666543 2356999999999999999996 9
Q ss_pred cceEEcceeeccccCCCccccccCCC--CCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCC
Q 015686 304 NMAVIGGNHIRLDRACPPRKKLKGED--APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~--~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~s 381 (402)
||.++.||.|.|.+...-...+..-+ ...-..-++|||..+.++++++||+.+|+.| |.|.+|.+.+++..+.+
T Consensus 176 Ng~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAF----G~I~~C~LAr~pt~~~H 251 (544)
T KOG0124|consen 176 NGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAF----GEIVKCQLARAPTGRGH 251 (544)
T ss_pred ccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhh----cceeeEEeeccCCCCCc
Confidence 99999999999987643211110000 0001124789999999999999999999999 99999999999999999
Q ss_pred ceEEEEEecCHHHHHHHHH
Q 015686 382 KGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 382 kG~aFV~F~s~e~A~~Al~ 400 (402)
+|||||+|.+..+...||.
T Consensus 252 kGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 252 KGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred cceeeEEeccccchHHHhh
Confidence 9999999999877766664
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.77 E-value=7.9e-18 Score=174.11 Aligned_cols=153 Identities=17% Similarity=0.249 Sum_probs=120.3
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
.++|||+|||+.+++++|+.+|+.||.|..|.|+..+. .+.++|||||+|.+.++|..||. |
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~-----------------~g~~~g~afV~f~~~e~A~~A~~~l 248 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPE-----------------TGRSKGFGFIQFHDAEEAKEALEVM 248 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC-----------------CCccceEEEEEECCHHHHHHHHHhc
Confidence 68999999999999999999999999999999865331 12367999999999999999995 9
Q ss_pred cceEEcceeeccccCCCccccc--------------------------------cCC-----------------------
Q 015686 304 NMAVIGGNHIRLDRACPPRKKL--------------------------------KGE----------------------- 328 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~--------------------------------~~~----------------------- 328 (402)
||..|.|+.|.|.++....... ...
T Consensus 249 ~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (457)
T TIGR01622 249 NGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRD 328 (457)
T ss_pred CCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccc
Confidence 9999999999999853110000 000
Q ss_pred -----C---------------------CCccCCcceeEecCCCCCCC----------HHHHHHHhccCCCCCCCeEEEEE
Q 015686 329 -----D---------------------APLYDIKKTVFVGNLPFDVK----------DEEIYQLFCGLNDLESSVEAVRV 372 (402)
Q Consensus 329 -----~---------------------~~~~~~~~tLfV~NLp~~~t----------eedL~~~F~~f~~~~G~I~~vrI 372 (402)
. .....+.++|+|.||....+ .+||++.|..| |.|..|.|
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~----G~v~~v~v 404 (457)
T TIGR01622 329 GIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKY----GGVVHIYV 404 (457)
T ss_pred ccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhc----CCeeEEEE
Confidence 0 00113467899999954443 36899999999 99999988
Q ss_pred eecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 373 IRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 373 ~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
... .+.|++||.|.++++|..|++.|
T Consensus 405 ~~~----~~~G~~fV~F~~~e~A~~A~~~l 430 (457)
T TIGR01622 405 DTK----NSAGKIYLKFSSVDAALAAFQAL 430 (457)
T ss_pred eCC----CCceeEEEEECCHHHHHHHHHHh
Confidence 642 36799999999999999999876
No 25
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=3.3e-18 Score=160.41 Aligned_cols=157 Identities=24% Similarity=0.288 Sum_probs=128.3
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
...|||.+||..+|..+|..+|++||.|..-||..+- ..+.++|.|||.|.....|+.||. |
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dq-----------------vtg~srGVgFiRFDKr~EAe~AIk~l 189 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQ-----------------VTGLSRGVGFIRFDKRIEAEEAIKGL 189 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhc-----------------ccceecceeEEEecchhHHHHHHHhc
Confidence 4569999999999999999999999998777764322 124578999999999999999996 9
Q ss_pred cceEEcc--eeeccccCCCccccccC---------------------------CC-----------CC------------
Q 015686 304 NMAVIGG--NHIRLDRACPPRKKLKG---------------------------ED-----------AP------------ 331 (402)
Q Consensus 304 ng~~l~G--r~I~V~~a~~~~k~~~~---------------------------~~-----------~~------------ 331 (402)
||+.-.| .+|.|.++..+..+... +. .+
T Consensus 190 NG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~ 269 (360)
T KOG0145|consen 190 NGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGV 269 (360)
T ss_pred cCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeee
Confidence 9998777 46888887654221100 00 00
Q ss_pred ----ccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 332 ----LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 332 ----~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
......+|||-||.+++++.-|+++|.+| |.|..|.|++|..+++++|||||++.+.++|..||..|
T Consensus 270 ~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpF----GAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sL 340 (360)
T KOG0145|consen 270 NLPGGPGGGWCIFVYNLSPDADESILWQLFGPF----GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 340 (360)
T ss_pred ccCCCCCCeeEEEEEecCCCchHhHHHHHhCcc----cceeeEEEEecCCcccccceeEEEecchHHHHHHHHHh
Confidence 01125799999999999999999999999 99999999999999999999999999999999998754
No 26
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=4.7e-18 Score=171.60 Aligned_cols=133 Identities=23% Similarity=0.362 Sum_probs=119.7
Q ss_pred cEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-cc
Q 015686 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FN 304 (402)
Q Consensus 226 ~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-ln 304 (402)
..|||| +++|+..|.++|+.+|+|.+|+++++. + +.|||||.|.++.+|..||. +|
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-------------------slgy~yvnf~~~~da~~A~~~~n 58 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-------------------SLGYAYVNFQQPADAERALDTMN 58 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-------------------ccceEEEecCCHHHHHHHHHHcC
Confidence 358999 999999999999999999999997743 2 34899999999999999995 99
Q ss_pred ceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceE
Q 015686 305 MAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGI 384 (402)
Q Consensus 305 g~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~ 384 (402)
...+.|+.|++-++... + ..|||.||+..++..+|.++|+.| |.|.+|+|.++ +.| ++||
T Consensus 59 ~~~~~~~~~rim~s~rd-------------~-~~~~i~nl~~~~~~~~~~d~f~~~----g~ilS~kv~~~-~~g-~kg~ 118 (369)
T KOG0123|consen 59 FDVLKGKPIRIMWSQRD-------------P-SLVFIKNLDESIDNKSLYDTFSEF----GNILSCKVATD-ENG-SKGY 118 (369)
T ss_pred CcccCCcEEEeehhccC-------------C-ceeeecCCCcccCcHHHHHHHHhh----cCeeEEEEEEc-CCC-ceee
Confidence 99999999999998632 1 229999999999999999999999 99999999999 446 9999
Q ss_pred EEEEecCHHHHHHHHHhC
Q 015686 385 AYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 385 aFV~F~s~e~A~~Al~~l 402 (402)
||+|.+.++|.+||++|
T Consensus 119 -FV~f~~e~~a~~ai~~~ 135 (369)
T KOG0123|consen 119 -FVQFESEESAKKAIEKL 135 (369)
T ss_pred -EEEeCCHHHHHHHHHHh
Confidence 99999999999999875
No 27
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.75 E-value=6.8e-19 Score=179.23 Aligned_cols=164 Identities=19% Similarity=0.282 Sum_probs=137.2
Q ss_pred CCcCCCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhH
Q 015686 218 FDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (402)
Q Consensus 218 ~~~e~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A 297 (402)
...++++.+|||+-.|+..++..+|.+||+.+|.|..|+|+++.. .++++|.|||+|.+.+++
T Consensus 172 l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~-----------------s~rskgi~Yvef~D~~sV 234 (549)
T KOG0147|consen 172 LSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRN-----------------SRRSKGIAYVEFCDEQSV 234 (549)
T ss_pred CCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeecccc-----------------chhhcceeEEEEecccch
Confidence 345566789999999999999999999999999999999976442 234779999999999999
Q ss_pred HHHHhccceEEcceeeccccCCCccccccCCC-----CCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEE
Q 015686 298 EAALAFNMAVIGGNHIRLDRACPPRKKLKGED-----APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRV 372 (402)
Q Consensus 298 ~~Al~lng~~l~Gr~I~V~~a~~~~k~~~~~~-----~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI 372 (402)
..||.|.|..+.|.+|.|+............. .....+-..|||+||.+++++++|+.+|++| |.|..|.+
T Consensus 235 p~aiaLsGqrllg~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepf----g~Ie~v~l 310 (549)
T KOG0147|consen 235 PLAIALSGQRLLGVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPF----GKIENVQL 310 (549)
T ss_pred hhHhhhcCCcccCceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCc----ccceeeee
Confidence 99999999999999999998754322211000 0111233449999999999999999999999 99999999
Q ss_pred eecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 373 IRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 373 ~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
++|..+|.++|||||+|.+.++|..|++.|
T Consensus 311 ~~d~~tG~skgfGfi~f~~~~~ar~a~e~l 340 (549)
T KOG0147|consen 311 TKDSETGRSKGFGFITFVNKEDARKALEQL 340 (549)
T ss_pred ccccccccccCcceEEEecHHHHHHHHHHh
Confidence 999889999999999999999999998754
No 28
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.75 E-value=3.4e-18 Score=167.92 Aligned_cols=153 Identities=20% Similarity=0.332 Sum_probs=133.8
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhc
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~l 303 (402)
..++||||+|+|+++++.|+.+|.+||.|..+.+++++.+ ++++||+||.|.+.+.+..+|..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t-----------------~rsrgFgfv~f~~~~~v~~vl~~ 67 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPST-----------------GRSRGFGFVTFATPEGVDAVLNA 67 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCC-----------------CCcccccceecCCCcchheeecc
Confidence 4688999999999999999999999999999999876542 23679999999999999999988
Q ss_pred cceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCce
Q 015686 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG 383 (402)
..+.|.|+.|.+..+.++........ ......|||++||..+++++|+++|.+| |.|..+.++.|..+.+++|
T Consensus 68 ~~h~~dgr~ve~k~av~r~~~~~~~~---~~~tkkiFvGG~~~~~~e~~~r~yfe~~----g~v~~~~~~~d~~~~~~rg 140 (311)
T KOG4205|consen 68 RTHKLDGRSVEPKRAVSREDQTKVGR---HLRTKKIFVGGLPPDTTEEDFKDYFEQF----GKVADVVIMYDKTTSRPRG 140 (311)
T ss_pred cccccCCccccceeccCccccccccc---ccceeEEEecCcCCCCchHHHhhhhhcc----ceeEeeEEeeccccccccc
Confidence 88899999999999987654432221 2256799999999999999999999999 8999999999999999999
Q ss_pred EEEEEecCHHHHHHHHH
Q 015686 384 IAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 384 ~aFV~F~s~e~A~~Al~ 400 (402)
||||.|.+++.+.+++.
T Consensus 141 Fgfv~~~~e~sVdkv~~ 157 (311)
T KOG4205|consen 141 FGFVTFDSEDSVDKVTL 157 (311)
T ss_pred ceeeEeccccccceecc
Confidence 99999999999887764
No 29
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.74 E-value=4.6e-18 Score=161.63 Aligned_cols=127 Identities=17% Similarity=0.302 Sum_probs=116.6
Q ss_pred EEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-ccc
Q 015686 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNM 305 (402)
Q Consensus 227 tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-lng 305 (402)
.|||||||..+++.+|+.+|++||+|..|.|+. -||||...+...+..||. |||
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK-------------------------NYgFVHiEdktaaedairNLhg 58 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVK-------------------------NYGFVHIEDKTAAEDAIRNLHG 58 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeec-------------------------ccceEEeecccccHHHHhhccc
Confidence 599999999999999999999999999999943 399999999999999997 999
Q ss_pred eEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEE
Q 015686 306 AVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIA 385 (402)
Q Consensus 306 ~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~a 385 (402)
..|+|..|.|.-+..+. ..+.+|+|+||.+.++..+|+..|++| |.|..|.|++| |+
T Consensus 59 YtLhg~nInVeaSksKs-----------k~stkl~vgNis~tctn~ElRa~fe~y----gpviecdivkd--------y~ 115 (346)
T KOG0109|consen 59 YTLHGVNINVEASKSKS-----------KASTKLHVGNISPTCTNQELRAKFEKY----GPVIECDIVKD--------YA 115 (346)
T ss_pred ceecceEEEEEeccccC-----------CCccccccCCCCccccCHHHhhhhccc----CCceeeeeecc--------ee
Confidence 99999999999887542 346899999999999999999999999 99999999866 99
Q ss_pred EEEecCHHHHHHHHHh
Q 015686 386 YVLFKTRLPIWLLRDV 401 (402)
Q Consensus 386 FV~F~s~e~A~~Al~~ 401 (402)
||.|.-.++|..||+-
T Consensus 116 fvh~d~~eda~~air~ 131 (346)
T KOG0109|consen 116 FVHFDRAEDAVEAIRG 131 (346)
T ss_pred EEEEeeccchHHHHhc
Confidence 9999999999999853
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=4.3e-17 Score=164.58 Aligned_cols=151 Identities=24% Similarity=0.331 Sum_probs=129.0
Q ss_pred cEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-cc
Q 015686 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FN 304 (402)
Q Consensus 226 ~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-ln 304 (402)
..|||.||+.+++..+|..+|+.||.|.+|++.+... . ++|| ||+|.++++|++|+. +|
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~----g---------------~kg~-FV~f~~e~~a~~ai~~~n 136 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN----G---------------SKGY-FVQFESEESAKKAIEKLN 136 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC----C---------------ceee-EEEeCCHHHHHHHHHHhc
Confidence 3399999999999999999999999999999966431 1 5689 999999999999996 99
Q ss_pred ceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceE
Q 015686 305 MAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGI 384 (402)
Q Consensus 305 g~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~ 384 (402)
|..+.|..|.|.....+......... ....-..++|.|++..+++..|..+|..+ |.|..+.|+.+ ..|.++||
T Consensus 137 g~ll~~kki~vg~~~~~~er~~~~~~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~----g~i~s~~v~~~-~~g~~~~~ 210 (369)
T KOG0123|consen 137 GMLLNGKKIYVGLFERKEEREAPLGE-YKKRFTNVYVKNLEEDSTDEELKDLFSAY----GSITSVAVMRD-SIGKSKGF 210 (369)
T ss_pred CcccCCCeeEEeeccchhhhcccccc-hhhhhhhhheeccccccchHHHHHhhccc----CcceEEEEeec-CCCCCCCc
Confidence 99999999999888765443322222 23345679999999999999999999999 99999999998 45779999
Q ss_pred EEEEecCHHHHHHHHHhC
Q 015686 385 AYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 385 aFV~F~s~e~A~~Al~~l 402 (402)
|||.|.+++.|..|++.|
T Consensus 211 gfv~f~~~e~a~~av~~l 228 (369)
T KOG0123|consen 211 GFVNFENPEDAKKAVETL 228 (369)
T ss_pred cceeecChhHHHHHHHhc
Confidence 999999999999998764
No 31
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=3.7e-16 Score=140.34 Aligned_cols=148 Identities=20% Similarity=0.284 Sum_probs=120.3
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||||||.+|-+.+|..+|.+||.|..|.|-. ..+. -+||||+|.++.+|+.||.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~----r~g~----------------ppfafVeFEd~RDAeDAiy 63 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKN----RPGP----------------PPFAFVEFEDPRDAEDAIY 63 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEecc----CCCC----------------CCeeEEEecCccchhhhhh
Confidence 3468999999999999999999999999999998821 1111 2599999999999999996
Q ss_pred -ccceEEcceeeccccCCCcccccc----------CC-------CCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCC
Q 015686 303 -FNMAVIGGNHIRLDRACPPRKKLK----------GE-------DAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLE 364 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~~k~~~----------~~-------~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~ 364 (402)
-+|..++|+.|+|.++..-..... +. ..+.......|.|.+||.+..++||++++...
T Consensus 64 gRdGYdydg~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRea---- 139 (241)
T KOG0105|consen 64 GRDGYDYDGCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREA---- 139 (241)
T ss_pred cccccccCcceEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhh----
Confidence 999999999999998764321110 00 02223345789999999999999999999998
Q ss_pred CCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 365 SSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 365 G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
|.|....+.+| |++.|.|...++..-|+.-
T Consensus 140 GdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ 169 (241)
T KOG0105|consen 140 GDVCFADVQRD-------GVGVVEYLRKEDMKYAVRK 169 (241)
T ss_pred CCeeeeeeecc-------cceeeeeeehhhHHHHHHh
Confidence 99999999887 4789999999998888764
No 32
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=8.9e-16 Score=144.91 Aligned_cols=120 Identities=23% Similarity=0.364 Sum_probs=100.5
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhc
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~l 303 (402)
..||||||||..++|++-|..||.+.|.|.+++|+.+
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~------------------------------------------- 41 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD------------------------------------------- 41 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehh-------------------------------------------
Confidence 3699999999999999999999999999988877431
Q ss_pred cceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCce
Q 015686 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG 383 (402)
.|.|.+++.+..+. .+......-|||+.|...++-++|+..|.+| |.|..++|++|.++++++|
T Consensus 42 --------e~~v~wa~~p~nQs----k~t~~~hfhvfvgdls~eI~~e~lr~aF~pF----GevS~akvirD~~T~KsKG 105 (321)
T KOG0148|consen 42 --------ELKVNWATAPGNQS----KPTSNQHFHVFVGDLSPEIDNEKLREAFAPF----GEVSDAKVIRDMNTGKSKG 105 (321)
T ss_pred --------hhccccccCcccCC----CCccccceeEEehhcchhcchHHHHHHhccc----cccccceEeecccCCcccc
Confidence 34555555442221 1112224679999999999999999999999 9999999999999999999
Q ss_pred EEEEEecCHHHHHHHHHhC
Q 015686 384 IAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 384 ~aFV~F~s~e~A~~Al~~l 402 (402)
||||.|-+.++|..||..|
T Consensus 106 YgFVSf~~k~dAEnAI~~M 124 (321)
T KOG0148|consen 106 YGFVSFPNKEDAENAIQQM 124 (321)
T ss_pred eeEEeccchHHHHHHHHHh
Confidence 9999999999999999865
No 33
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.63 E-value=4.4e-15 Score=137.46 Aligned_cols=148 Identities=24% Similarity=0.351 Sum_probs=120.6
Q ss_pred ccEEEEeCCCCcCcHHHHHH----HhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHH
Q 015686 225 LRTIFVGNLPLKVKKKTLIK----EFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~----~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~A 300 (402)
+.||||.||+-.+..++|+. +|++||.|..|.... +++.+|.|||.|.+.+.|-.|
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--------------------t~KmRGQA~VvFk~~~~As~A 68 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--------------------TPKMRGQAFVVFKETEAASAA 68 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--------------------CCCccCceEEEecChhHHHHH
Confidence 55999999999999999888 999999998887632 123679999999999999999
Q ss_pred Hh-ccceEEcceeeccccCCCccccccC--------------------------CC---------------CCccCCcce
Q 015686 301 LA-FNMAVIGGNHIRLDRACPPRKKLKG--------------------------ED---------------APLYDIKKT 338 (402)
Q Consensus 301 l~-lng~~l~Gr~I~V~~a~~~~k~~~~--------------------------~~---------------~~~~~~~~t 338 (402)
+. |+|..|.|..++|++|+........ .. ....++..+
T Consensus 69 ~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~i 148 (221)
T KOG4206|consen 69 LRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNI 148 (221)
T ss_pred HHHhcCCcccCchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceE
Confidence 95 9999999999999998753110000 00 112567789
Q ss_pred eEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 339 VFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 339 LfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
||+.|||..++.+.|..+|++| +....||++.. -.|.|||+|.+...|..|...
T Consensus 149 lf~~niP~es~~e~l~~lf~qf----~g~keir~i~~-----~~~iAfve~~~d~~a~~a~~~ 202 (221)
T KOG4206|consen 149 LFLTNIPSESESEMLSDLFEQF----PGFKEIRLIPP-----RSGIAFVEFLSDRQASAAQQA 202 (221)
T ss_pred EEEecCCcchhHHHHHHHHhhC----cccceeEeccC-----CCceeEEecchhhhhHHHhhh
Confidence 9999999999999999999999 67888888765 368999999999888777654
No 34
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=2.3e-15 Score=149.69 Aligned_cols=63 Identities=14% Similarity=0.237 Sum_probs=60.0
Q ss_pred cceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
...|||.+||.+.-+.+|-..|..| |.|.+..+..|..+|.++.|+||.|++..+|..||.+|
T Consensus 424 GanlfiyhlPqefgdq~l~~~f~pf----G~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~am 486 (510)
T KOG0144|consen 424 GANLFIYHLPQEFGDQDLIATFQPF----GGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAM 486 (510)
T ss_pred ccceeeeeCchhhhhHHHHHHhccc----cceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHh
Confidence 3579999999999999999999999 99999999999999999999999999999999999876
No 35
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=4.8e-15 Score=139.70 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=60.8
Q ss_pred cceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.+.|||-.||.+..+.+|-++|-+| |.|.+..|..|+.++.+++||||.|+++.+|+.||.+|
T Consensus 285 GCNlFIYHLPQEFgDaEliQmF~PF----GhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAM 347 (371)
T KOG0146|consen 285 GCNLFIYHLPQEFGDAELIQMFLPF----GHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 347 (371)
T ss_pred cceEEEEeCchhhccHHHHHHhccc----cceeeeeeeehhccccccceeeEecCCchhHHHHHHHh
Confidence 6899999999999999999999999 99999999999999999999999999999999999876
No 36
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.58 E-value=2.2e-14 Score=144.88 Aligned_cols=151 Identities=22% Similarity=0.279 Sum_probs=117.9
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhcc
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ln 304 (402)
..-|-+++|||.+|+++|+.||+.|+ |.++.+.+. . ++.+|-|||+|.+.+++++||+.+
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~----~---------------Gr~sGeA~Ve~~seedv~~Alkkd 69 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR----N---------------GRPSGEAYVEFTSEEDVEKALKKD 69 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc----C---------------CCcCcceEEEeechHHHHHHHHhh
Confidence 56689999999999999999999998 777666321 1 335699999999999999999999
Q ss_pred ceEEcceeeccccCCCccccccC--CCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEE-EEEeecCCCCCC
Q 015686 305 MAVIGGNHIRLDRACPPRKKLKG--EDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA-VRVIRHPHMRVG 381 (402)
Q Consensus 305 g~~l~Gr~I~V~~a~~~~k~~~~--~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~-vrI~~d~~~g~s 381 (402)
...+..|.|.|-.+......... .......+.-.|.+++||+.++++||.+||+... .|.. |-++.+ ..+++
T Consensus 70 R~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~----Iv~~gi~l~~d-~rgR~ 144 (510)
T KOG4211|consen 70 RESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLE----IVPDGILLPMD-QRGRP 144 (510)
T ss_pred HHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCc----ccccceeeecc-CCCCc
Confidence 99999999999877544322111 0011113567899999999999999999999982 2222 445556 45889
Q ss_pred ceEEEEEecCHHHHHHHHH
Q 015686 382 KGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 382 kG~aFV~F~s~e~A~~Al~ 400 (402)
.|-|||+|.+.+.|+.||.
T Consensus 145 tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 145 TGEAFVQFESQESAEIALG 163 (510)
T ss_pred ccceEEEecCHHHHHHHHH
Confidence 9999999999999999984
No 37
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.55 E-value=1.2e-13 Score=134.49 Aligned_cols=166 Identities=22% Similarity=0.283 Sum_probs=119.0
Q ss_pred CcCCCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHH
Q 015686 219 DDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (402)
Q Consensus 219 ~~e~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~ 298 (402)
.-++.-+..|||.|||.++|.+++.++|++||.|.. ++ +++.++= ..=+.+.|.-+|-|+|+|.-.+++.
T Consensus 128 ~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~-----d~--~t~epk~---KlYrd~~G~lKGDaLc~y~K~ESVe 197 (382)
T KOG1548|consen 128 NPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMR-----DP--QTGEPKV---KLYRDNQGKLKGDALCCYIKRESVE 197 (382)
T ss_pred CcccccCceEEecCCCCcccHHHHHHHHHhcceEec-----cC--CCCCeeE---EEEecCCCCccCceEEEeecccHHH
Confidence 333444677999999999999999999999996642 11 1222210 0001122456799999999999999
Q ss_pred HHHh-ccceEEcceeeccccCCCccc-------cc---------------c-----C--CCCCccCCcceeEecCCC---
Q 015686 299 AALA-FNMAVIGGNHIRLDRACPPRK-------KL---------------K-----G--EDAPLYDIKKTVFVGNLP--- 345 (402)
Q Consensus 299 ~Al~-lng~~l~Gr~I~V~~a~~~~k-------~~---------------~-----~--~~~~~~~~~~tLfV~NLp--- 345 (402)
.|+. |++..|.|+.|+|..|.-..+ +. . . .........++|.|+||=
T Consensus 198 LA~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~ 277 (382)
T KOG1548|consen 198 LAIKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPE 277 (382)
T ss_pred HHHHHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHH
Confidence 9997 999999999999998752211 00 0 0 011223346899999982
Q ss_pred -CCCC-------HHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 346 -FDVK-------DEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 346 -~~~t-------eedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
+..+ .++|++-++.| |.|..| ++.|++ +.|.+-|.|.+.++|..||++|
T Consensus 278 ~~~~~~~l~~dlkedl~eec~K~----G~v~~v-vv~d~h---PdGvvtV~f~n~eeA~~ciq~m 334 (382)
T KOG1548|consen 278 DFEKNPDLLNDLKEDLTEECEKF----GQVRKV-VVYDRH---PDGVVTVSFRNNEEADQCIQTM 334 (382)
T ss_pred HhccCHHHHHHHHHHHHHHHHHh----CCcceE-EEeccC---CCceeEEEeCChHHHHHHHHHh
Confidence 2233 56677778898 999998 556644 7899999999999999999986
No 38
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=5e-14 Score=143.22 Aligned_cols=167 Identities=23% Similarity=0.328 Sum_probs=121.3
Q ss_pred cCCCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHH
Q 015686 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (402)
Q Consensus 220 ~e~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~ 299 (402)
.....++.||||+||++++++.|...|..||.+ .|.|..........+-+| +-||+|+.|.++.+++.
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkG-----------s~~YvflvFe~E~sV~~ 321 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKG-----------SYGYVFLVFEDERSVQS 321 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCC-----------cccEEEEEecchHHHHH
Confidence 335567899999999999999999999999987 466643222233333333 33699999999999887
Q ss_pred HHhccceEEcceeeccccCCCccccc------------cCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCe
Q 015686 300 ALAFNMAVIGGNHIRLDRACPPRKKL------------KGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSV 367 (402)
Q Consensus 300 Al~lng~~l~Gr~I~V~~a~~~~k~~------------~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I 367 (402)
.|...-..-.+..|.|.....+.+.. ........++.+|||||+||.-++.++|..+|... ||.|
T Consensus 322 Ll~aC~~~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~l---yGgV 398 (520)
T KOG0129|consen 322 LLSACSEGEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDL---FGGV 398 (520)
T ss_pred HHHHHhhcccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHh---cCce
Confidence 77311111112222222222111100 11124446789999999999999999999999954 4999
Q ss_pred EEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 368 EAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 368 ~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
.++.|-+|++.+.++|-|-|+|.+..+-.+||.+
T Consensus 399 ~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 399 LYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred EEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 9999999999999999999999999999999875
No 39
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.53 E-value=1.5e-13 Score=145.79 Aligned_cols=79 Identities=22% Similarity=0.410 Sum_probs=69.2
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..++|||+|||+++++++|+.+|+.||.|.+++|.+++. + +.++|||||+|.+.++|..||.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~--t---------------gksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPT--G---------------RGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCC--C---------------CCcCCeEEEEECCHHHHHHHHHH
Confidence 357899999999999999999999999999999965432 1 2356999999999999999995
Q ss_pred ccceEEcceeeccccCC
Q 015686 303 FNMAVIGGNHIRLDRAC 319 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~ 319 (402)
||+..|+|+.|+|.++.
T Consensus 266 mNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCV 282 (612)
T ss_pred hCCCeeCCeEEEEEecC
Confidence 99999999999997654
No 40
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.51 E-value=5.6e-14 Score=124.43 Aligned_cols=82 Identities=21% Similarity=0.395 Sum_probs=71.7
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+++|.+||.|.+|.|+.++. + ++++|||||+|.+.++|+.||.
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~--t---------------g~~kGfaFV~F~~~e~A~~Al~ 94 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRE--T---------------GRSRGFGFVNFNDEGAATAAIS 94 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCC--C---------------CCcceEEEEEECCHHHHHHHHH
Confidence 3467899999999999999999999999999999865432 1 2367999999999999999996
Q ss_pred -ccceEEcceeeccccCCCc
Q 015686 303 -FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~ 321 (402)
||+..|.|+.|.|.++..+
T Consensus 95 ~lng~~i~Gr~l~V~~a~~~ 114 (144)
T PLN03134 95 EMDGKELNGRHIRVNPANDR 114 (144)
T ss_pred HcCCCEECCEEEEEEeCCcC
Confidence 9999999999999998654
No 41
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.50 E-value=2.6e-13 Score=126.46 Aligned_cols=151 Identities=26% Similarity=0.415 Sum_probs=113.4
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
.++|||+|||+++++++|..+|..||.|..+.+..+. . .+.++|||||+|.+.++|..|+. +
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~--~---------------~~~~~g~~~v~f~~~~~~~~a~~~~ 177 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDR--E---------------TGKSRGFAFVEFESEESAEKAIEEL 177 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeecc--c---------------cCccCceEEEEecCHHHHHHHHHHc
Confidence 5899999999999999999999999999888885533 1 13467999999999999999996 9
Q ss_pred cceEEcceeeccccCCC----ccccc-----------cCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeE
Q 015686 304 NMAVIGGNHIRLDRACP----PRKKL-----------KGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE 368 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~----~~k~~-----------~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~ 368 (402)
+|..|.|+.|.|.++.. ..... .............++++|++..++..++..+|..+ |.+.
T Consensus 178 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 253 (306)
T COG0724 178 NGKELEGRPLRVQKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSR----GDIV 253 (306)
T ss_pred CCCeECCceeEeeccccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhcccc----ccce
Confidence 99999999999999642 11111 00012224456889999999999999999999999 8887
Q ss_pred EEEEeecCCCCCCceEEEEEecCHHHHH
Q 015686 369 AVRVIRHPHMRVGKGIAYVLFKTRLPIW 396 (402)
Q Consensus 369 ~vrI~~d~~~g~skG~aFV~F~s~e~A~ 396 (402)
.+.+..........++.++.+.....+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (306)
T COG0724 254 RASLPPSKDGKIPKSRSFVGNEASKDAL 281 (306)
T ss_pred eeeccCCCCCcccccccccchhHHHhhh
Confidence 7666655443334445554444444433
No 42
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.46 E-value=1.9e-13 Score=104.01 Aligned_cols=69 Identities=35% Similarity=0.598 Sum_probs=61.1
Q ss_pred EEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-ccce
Q 015686 228 IFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNMA 306 (402)
Q Consensus 228 VfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-lng~ 306 (402)
|||+|||+++++++|+.+|++||.|..+.++.. .. +..+|||||+|.+.++|..|+. +||.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~---~~---------------~~~~~~a~V~F~~~~~a~~a~~~l~g~ 62 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN---SS---------------GKSKGYAFVEFESEEDAEKALEELNGK 62 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE---TT---------------SSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc---cc---------------ccccceEEEEEcCHHHHHHHHHHcCCC
Confidence 799999999999999999999999999988553 11 2246899999999999999997 9999
Q ss_pred EEcceeec
Q 015686 307 VIGGNHIR 314 (402)
Q Consensus 307 ~l~Gr~I~ 314 (402)
.|.|+.|+
T Consensus 63 ~~~~~~ir 70 (70)
T PF00076_consen 63 KINGRKIR 70 (70)
T ss_dssp EETTEEEE
T ss_pred EECccCcC
Confidence 99999885
No 43
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.46 E-value=7.5e-13 Score=131.97 Aligned_cols=155 Identities=18% Similarity=0.280 Sum_probs=124.6
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhh-hcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFI-KFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~-~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
.|.|||.||||++...+|+.+|. +.|.|..|.|..+. . ++.+|+|.|+|.+++.+++|++
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~---~---------------GK~rGcavVEFk~~E~~qKa~E~ 105 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE---S---------------GKARGCAVVEFKDPENVQKALEK 105 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc---C---------------CCcCCceEEEeeCHHHHHHHHHH
Confidence 57799999999999999999998 78999999985432 2 3356999999999999999996
Q ss_pred ccceEEcceeeccccCCCccccc------------------------------------------------cCCCC----
Q 015686 303 FNMAVIGGNHIRLDRACPPRKKL------------------------------------------------KGEDA---- 330 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~------------------------------------------------~~~~~---- 330 (402)
||.+.+.||.|.|.-....+..+ .....
T Consensus 106 lnk~~~~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~ 185 (608)
T KOG4212|consen 106 LNKYEVNGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMS 185 (608)
T ss_pred hhhccccCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccc
Confidence 99999999999997533100000 00000
Q ss_pred -----------------------C-ccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEE
Q 015686 331 -----------------------P-LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAY 386 (402)
Q Consensus 331 -----------------------~-~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aF 386 (402)
. ..+-..++||.||.+.+....|++.|.-. |.|..|.+-.|+. |.++|||.
T Consensus 186 ~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmA----Gkv~~vdf~idKe-G~s~G~~v 260 (608)
T KOG4212|consen 186 NDYNNSSNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMA----GKVQSVDFSIDKE-GNSRGFAV 260 (608)
T ss_pred cccccchhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccc----eeeeeeceeeccc-cccCCeeE
Confidence 0 01224689999999999999999999987 9999999988855 78999999
Q ss_pred EEecCHHHHHHHHHhC
Q 015686 387 VLFKTRLPIWLLRDVT 402 (402)
Q Consensus 387 V~F~s~e~A~~Al~~l 402 (402)
|+|.++-.|..||-||
T Consensus 261 i~y~hpveavqaIsml 276 (608)
T KOG4212|consen 261 IEYDHPVEAVQAISML 276 (608)
T ss_pred EEecchHHHHHHHHhh
Confidence 9999999999998775
No 44
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.43 E-value=1.2e-12 Score=121.03 Aligned_cols=159 Identities=21% Similarity=0.275 Sum_probs=113.7
Q ss_pred CcCCCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHH
Q 015686 219 DDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (402)
Q Consensus 219 ~~e~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~ 298 (402)
.+++..-|||||.+||.++...+|..+|..|-.-....|.. +.... .-++-+|||.|.+...|.
T Consensus 28 ~~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~---Tsk~~-------------~~~~pvaFatF~s~q~A~ 91 (284)
T KOG1457|consen 28 ADEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKY---TSKGD-------------QVCKPVAFATFTSHQFAL 91 (284)
T ss_pred cccccccceeeeccCCcccCHHHHHHHhccCCCccceeeee---ccCCC-------------ccccceEEEEecchHHHH
Confidence 34455579999999999999999999999987666666632 11111 114469999999999999
Q ss_pred HHHh-ccceEEc---ceeeccccCCCcc--ccccCCC-------------------------------------------
Q 015686 299 AALA-FNMAVIG---GNHIRLDRACPPR--KKLKGED------------------------------------------- 329 (402)
Q Consensus 299 ~Al~-lng~~l~---Gr~I~V~~a~~~~--k~~~~~~------------------------------------------- 329 (402)
.|+. |||..|+ +..|++.++.... ++.++..
T Consensus 92 aamnaLNGvrFDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~a 171 (284)
T KOG1457|consen 92 AAMNALNGVRFDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADA 171 (284)
T ss_pred HHHHHhcCeeeccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCcccccc
Confidence 9995 9999985 6778887765321 1110000
Q ss_pred --------------------------------CCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCC
Q 015686 330 --------------------------------APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPH 377 (402)
Q Consensus 330 --------------------------------~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~ 377 (402)
......+.||||.||..++++++|+++|+.| .....++|.-.
T Consensus 172 l~~~~~t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~----~gf~~l~~~~~-- 245 (284)
T KOG1457|consen 172 LKENDTTKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRY----PGFHILKIRAR-- 245 (284)
T ss_pred CCCccccchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhC----CCceEEEEecC--
Confidence 0001124699999999999999999999999 34555555321
Q ss_pred CCCCceEEEEEecCHHHHHHHHHh
Q 015686 378 MRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 378 ~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
....+|||.|.+.+.|..||.-
T Consensus 246 --~g~~vaf~~~~~~~~at~am~~ 267 (284)
T KOG1457|consen 246 --GGMPVAFADFEEIEQATDAMNH 267 (284)
T ss_pred --CCcceEeecHHHHHHHHHHHHH
Confidence 1456899999999999988853
No 45
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.41 E-value=4.6e-13 Score=127.97 Aligned_cols=75 Identities=31% Similarity=0.391 Sum_probs=68.1
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhcc
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ln 304 (402)
.++|||+|||+.+++++|++||+.||.|.+|+|++... ++|||||+|.+.++|..||.||
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--------------------~~GfAFVtF~d~eaAe~AllLn 63 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--------------------RSQIAYVTFKDPQGAETALLLS 63 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--------------------CCCEEEEEeCcHHHHHHHHHhc
Confidence 57999999999999999999999999999999954321 2489999999999999999999
Q ss_pred ceEEcceeeccccCC
Q 015686 305 MAVIGGNHIRLDRAC 319 (402)
Q Consensus 305 g~~l~Gr~I~V~~a~ 319 (402)
|..|.|+.|.|.++.
T Consensus 64 G~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 64 GATIVDQSVTITPAE 78 (260)
T ss_pred CCeeCCceEEEEecc
Confidence 999999999999875
No 46
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=8e-13 Score=112.60 Aligned_cols=79 Identities=22% Similarity=0.313 Sum_probs=68.0
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
.++|||||||++-+++++|+++|+.||.|..|.+=.+. .+.. .+|||||+|.+.++|..||.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr--~kkt---------------pCGFCFVeyy~~~dA~~Alry 97 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDR--FKKT---------------PCGFCFVEYYSRDDAEDALRY 97 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEecccc--CCcC---------------ccceEEEEEecchhHHHHHHH
Confidence 37999999999999999999999999999887663222 1222 45999999999999999998
Q ss_pred ccceEEcceeeccccCC
Q 015686 303 FNMAVIGGNHIRLDRAC 319 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~ 319 (402)
++|..|..+.|++++-.
T Consensus 98 isgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 98 ISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hccCcccccceeeeccc
Confidence 99999999999999864
No 47
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.37 E-value=1.9e-12 Score=132.45 Aligned_cols=150 Identities=17% Similarity=0.225 Sum_probs=112.1
Q ss_pred EEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-ccc
Q 015686 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNM 305 (402)
Q Consensus 227 tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-lng 305 (402)
.||||||.++++++.|+.+|..||.|..|.++.+. ..|+++|||||+|.+.+.|..|+. |||
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~-----------------~tG~skgfGfi~f~~~~~ar~a~e~lng 342 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDS-----------------ETGRSKGFGFITFVNKEDARKALEQLNG 342 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeecccc-----------------ccccccCcceEEEecHHHHHHHHHHhcc
Confidence 39999999999999999999999999999885432 124578999999999999999985 999
Q ss_pred eEEcceeeccccCCCccccc----------------------------------------------------------cC
Q 015686 306 AVIGGNHIRLDRACPPRKKL----------------------------------------------------------KG 327 (402)
Q Consensus 306 ~~l~Gr~I~V~~a~~~~k~~----------------------------------------------------------~~ 327 (402)
..|-|+.|.|....-.-... .+
T Consensus 343 felAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~ 422 (549)
T KOG0147|consen 343 FELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFN 422 (549)
T ss_pred ceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhc
Confidence 99999999987543110000 00
Q ss_pred C-----CCCc-------cCCcceeEecCC--CCCCC--------HHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEE
Q 015686 328 E-----DAPL-------YDIKKTVFVGNL--PFDVK--------DEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIA 385 (402)
Q Consensus 328 ~-----~~~~-------~~~~~tLfV~NL--p~~~t--------eedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~a 385 (402)
. .... ..++.++.+.|| |...| .+||.+-+..| |.|..|.|... +-|+.
T Consensus 423 ~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~----g~v~hi~vd~n-----s~g~V 493 (549)
T KOG0147|consen 423 GVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKH----GKVCHIFVDKN-----SAGCV 493 (549)
T ss_pred CCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhc----CCeeEEEEccC-----CCceE
Confidence 0 0000 134567888888 33322 46677777888 89998877543 45999
Q ss_pred EEEecCHHHHHHHHHhC
Q 015686 386 YVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 386 FV~F~s~e~A~~Al~~l 402 (402)
||.|.+.+.|..|+.+|
T Consensus 494 Yvrc~s~~~A~~a~~al 510 (549)
T KOG0147|consen 494 YVRCPSAEAAGTAVKAL 510 (549)
T ss_pred EEecCcHHHHHHHHHHH
Confidence 99999999999998875
No 48
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.34 E-value=3.9e-12 Score=112.67 Aligned_cols=65 Identities=17% Similarity=0.290 Sum_probs=61.3
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
...++|||+|||+.+++++|+++|.+| |.|..|.|+.|+.++.++|||||+|.+.++|..||+.|
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~l 96 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHF----GDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC----CCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHc
Confidence 456889999999999999999999999 99999999999999999999999999999999999753
No 49
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=6.4e-12 Score=131.81 Aligned_cols=157 Identities=22% Similarity=0.305 Sum_probs=119.0
Q ss_pred CCcCCCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcc-eEEEEEeechh
Q 015686 218 FDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSV-HAYIVFKSEQS 296 (402)
Q Consensus 218 ~~~e~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG-~aFV~F~s~e~ 296 (402)
|+......+.|+|+|||..+..++|..+|..||.|..|.|+ + . | .++|+|.+...
T Consensus 378 F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~---~-------------------G~~aiv~fl~p~e 433 (725)
T KOG0110|consen 378 FSQAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--P---G-------------------GTGAIVEFLNPLE 433 (725)
T ss_pred chhhhhhcceeeeccCccccccHHHHHHhhcccccceeecC--c---c-------------------cceeeeeecCccc
Confidence 44455667889999999999999999999999999888551 1 1 2 49999999999
Q ss_pred HHHHHh-ccceEEcceeeccccCCCcccc-----c---------------------cCC---C------CC------ccC
Q 015686 297 TEAALA-FNMAVIGGNHIRLDRACPPRKK-----L---------------------KGE---D------AP------LYD 334 (402)
Q Consensus 297 A~~Al~-lng~~l~Gr~I~V~~a~~~~k~-----~---------------------~~~---~------~~------~~~ 334 (402)
|+.|+. |....+...++.+.++...-.. . .+. + .+ ...
T Consensus 434 Ar~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~ 513 (725)
T KOG0110|consen 434 ARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEE 513 (725)
T ss_pred hHHHHHHhchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccc
Confidence 999996 8888887777776654311000 0 000 0 00 011
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCC---CCCceEEEEEecCHHHHHHHHHhC
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM---RVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~---g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..++|||.||++.+|.++|..+|..+ |.|.+|.|...+.. -.|.|||||+|.+.++|+.|+++|
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~----G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~l 580 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQ----GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKAL 580 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhc----CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHh
Confidence 12349999999999999999999998 99999988776431 235699999999999999999875
No 50
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.32 E-value=5.1e-12 Score=97.03 Aligned_cols=69 Identities=29% Similarity=0.536 Sum_probs=57.7
Q ss_pred EEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-ccce
Q 015686 228 IFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNMA 306 (402)
Q Consensus 228 VfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-lng~ 306 (402)
|||+|||+++++++|+.+|..||.|..+.+...+ + +..+|+|||+|.+.++|..|+. +++.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~--~----------------~~~~~~a~v~f~~~~~a~~al~~~~~~ 62 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNK--D----------------GQSRGFAFVEFSSEEDAKRALELLNGK 62 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEEST--T----------------SSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeee--c----------------cccCCEEEEEeCCHHHHHHHHHHCCCc
Confidence 7999999999999999999999999999885421 1 1256899999999999999997 6669
Q ss_pred EEcceeec
Q 015686 307 VIGGNHIR 314 (402)
Q Consensus 307 ~l~Gr~I~ 314 (402)
.|+|+.|+
T Consensus 63 ~~~g~~l~ 70 (70)
T PF14259_consen 63 EIDGRKLR 70 (70)
T ss_dssp EETTEEEE
T ss_pred EECCEEcC
Confidence 99999874
No 51
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=3.3e-12 Score=119.16 Aligned_cols=139 Identities=17% Similarity=0.329 Sum_probs=112.3
Q ss_pred EEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-ccc
Q 015686 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNM 305 (402)
Q Consensus 227 tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-lng 305 (402)
.||||+||+.+.+.+|..||..||.|..+.+. .||+||+|.+.-+|.-|+- +|+
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------------------------~gf~fv~fed~rda~Dav~~l~~ 57 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK-------------------------NGFGFVEFEDPRDADDAVHDLDG 57 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee-------------------------cccceeccCchhhhhcccchhcC
Confidence 59999999999999999999999999888771 2799999999999999994 999
Q ss_pred eEEcceeeccccCCCccccc----cCC----C---CCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEee
Q 015686 306 AVIGGNHIRLDRACPPRKKL----KGE----D---APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIR 374 (402)
Q Consensus 306 ~~l~Gr~I~V~~a~~~~k~~----~~~----~---~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~ 374 (402)
..|.|-.+.|.++....... .+. . .......+.|+|.|++..+.+.+|...|+.+ |.+....+
T Consensus 58 ~~l~~e~~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~----g~~~~~~~-- 131 (216)
T KOG0106|consen 58 KELCGERLVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPA----GEVTYVDA-- 131 (216)
T ss_pred ceecceeeeeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhccc----CCCchhhh--
Confidence 99999888888876421111 000 0 1112235788999999999999999999999 88855444
Q ss_pred cCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 375 HPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 375 d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.++++||+|.+.++|..||..|
T Consensus 132 ------~~~~~~v~Fs~~~da~ra~~~l 153 (216)
T KOG0106|consen 132 ------RRNFAFVEFSEQEDAKRALEKL 153 (216)
T ss_pred ------hccccceeehhhhhhhhcchhc
Confidence 4679999999999999999765
No 52
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.29 E-value=7.9e-12 Score=117.93 Aligned_cols=75 Identities=27% Similarity=0.268 Sum_probs=67.8
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhcc
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ln 304 (402)
..||||+||++.+|+++|++||+.||.|.+|+|+++. .++|||||+|.+++++..||.||
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~--------------------et~gfAfVtF~d~~aaetAllLn 64 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG--------------------EYACTAYVTFKDAYALETAVLLS 64 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC--------------------CcceEEEEEECCHHHHHHHHhcC
Confidence 5799999999999999999999999999999996431 13479999999999999999999
Q ss_pred ceEEcceeeccccCC
Q 015686 305 MAVIGGNHIRLDRAC 319 (402)
Q Consensus 305 g~~l~Gr~I~V~~a~ 319 (402)
|..|.++.|.|..+.
T Consensus 65 Ga~l~d~~I~It~~~ 79 (243)
T PLN03121 65 GATIVDQRVCITRWG 79 (243)
T ss_pred CCeeCCceEEEEeCc
Confidence 999999999998765
No 53
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=5.1e-12 Score=112.99 Aligned_cols=75 Identities=27% Similarity=0.471 Sum_probs=68.5
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
.+.||||||+..+++.+|...|..||+|.+|+|...| -|||||+|.+..+|..|+. |
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP----------------------PGfAFVEFed~RDA~DAvr~L 67 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP----------------------PGFAFVEFEDPRDAEDAVRYL 67 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC----------------------CCceEEeccCcccHHHHHhhc
Confidence 5789999999999999999999999999999985533 2899999999999999995 9
Q ss_pred cceEEcceeeccccCCCc
Q 015686 304 NMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~ 321 (402)
+|..|.|..|.|.++...
T Consensus 68 DG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 68 DGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCccccCceEEEEeecCC
Confidence 999999999999998754
No 54
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=7.8e-12 Score=116.52 Aligned_cols=79 Identities=23% Similarity=0.330 Sum_probs=68.6
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhcc
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ln 304 (402)
-.+||||||+|.+..+.|+.+|++||.|....++.+.. +++|+|||||.|.+.++|..|++--
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~-----------------t~rskGyGfVTf~d~~aa~rAc~dp 74 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKN-----------------TGRSKGYGFVTFRDAEAATRACKDP 74 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccC-----------------CccccceeeEEeecHHHHHHHhcCC
Confidence 46799999999999999999999999999998865432 2447899999999999999999866
Q ss_pred ceEEcceeeccccCCC
Q 015686 305 MAVIGGNHIRLDRACP 320 (402)
Q Consensus 305 g~~l~Gr~I~V~~a~~ 320 (402)
.-+|+||+..|.++.-
T Consensus 75 ~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 75 NPIIDGRKANCNLASL 90 (247)
T ss_pred CCcccccccccchhhh
Confidence 7789999999988753
No 55
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=8.6e-13 Score=118.51 Aligned_cols=80 Identities=23% Similarity=0.392 Sum_probs=70.8
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH-h
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al-~ 302 (402)
++.-|||||||++.|+.+|..+|++||.|..|.|+++. . +|.|+||||++|.+..+...|+ .
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk--~---------------TGKSKGFaFLcYEDQRSTILAVDN 96 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDK--K---------------TGKSKGFAFLCYEDQRSTILAVDN 96 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecC--C---------------CCcccceEEEEecCccceEEEEec
Confidence 46789999999999999999999999999999997753 2 2447799999999999999999 4
Q ss_pred ccceEEcceeeccccCCC
Q 015686 303 FNMAVIGGNHIRLDRACP 320 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~ 320 (402)
|||..|.||.|+|++...
T Consensus 97 ~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 97 LNGIKILGRTIRVDHVSN 114 (219)
T ss_pred cCCceecceeEEeeeccc
Confidence 999999999999998754
No 56
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.24 E-value=2.2e-11 Score=92.52 Aligned_cols=58 Identities=31% Similarity=0.544 Sum_probs=55.2
Q ss_pred eEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 339 VFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 339 LfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
|||+|||..+++++|+++|..| |.|..+.+..+ .++.++|||||+|.++++|..|++.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~----g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~ 58 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQF----GKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEE 58 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTT----STEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHH
T ss_pred cEEcCCCCcCCHHHHHHHHHHh----hhccccccccc-ccccccceEEEEEcCHHHHHHHHHH
Confidence 7999999999999999999999 99999999998 6788999999999999999999984
No 57
>smart00362 RRM_2 RNA recognition motif.
Probab=99.23 E-value=3.8e-11 Score=89.97 Aligned_cols=71 Identities=38% Similarity=0.644 Sum_probs=61.9
Q ss_pred EEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-ccc
Q 015686 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNM 305 (402)
Q Consensus 227 tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-lng 305 (402)
+|||+|||..++.++|+.+|..||.|..+.+...+ + .++|+|||+|.+.+.|+.|+. +++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~----~---------------~~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT----G---------------KSKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC----C---------------CCCceEEEEeCCHHHHHHHHHHhCC
Confidence 59999999999999999999999999988875422 1 245899999999999999996 999
Q ss_pred eEEcceeeccc
Q 015686 306 AVIGGNHIRLD 316 (402)
Q Consensus 306 ~~l~Gr~I~V~ 316 (402)
..+.|+.|.|.
T Consensus 62 ~~~~~~~i~v~ 72 (72)
T smart00362 62 TKLGGRPLRVE 72 (72)
T ss_pred cEECCEEEeeC
Confidence 99999998763
No 58
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=1.5e-11 Score=119.21 Aligned_cols=78 Identities=22% Similarity=0.435 Sum_probs=70.3
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
.+.|+|+||||..-+-||+.+|.+||+|.+|.|+. +. +| |+|||||.|.+.++|++|-+ |
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIf----NE----RG-----------SKGFGFVTmen~~dadRARa~L 156 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIF----NE----RG-----------SKGFGFVTMENPADADRARAEL 156 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEe----cc----CC-----------CCccceEEecChhhHHHHHHHh
Confidence 57899999999999999999999999999999954 22 22 67999999999999999995 9
Q ss_pred cceEEcceeeccccCCCc
Q 015686 304 NMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~ 321 (402)
||..+.||+|.|..+..+
T Consensus 157 Hgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 157 HGTVVEGRKIEVNNATAR 174 (376)
T ss_pred hcceeeceEEEEeccchh
Confidence 999999999999998765
No 59
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=3.1e-11 Score=99.48 Aligned_cols=77 Identities=21% Similarity=0.358 Sum_probs=68.2
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
.+.|||+|||+++|.+++.++|.+||.|..|||=. + ...+|.|||.|.+..+|.+|+. |
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~-----~---------------k~TrGTAFVVYedi~dAk~A~dhl 77 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN-----T---------------KETRGTAFVVYEDIFDAKKACDHL 77 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecC-----c---------------cCcCceEEEEehHhhhHHHHHHHh
Confidence 68899999999999999999999999999999821 1 1256899999999999999996 9
Q ss_pred cceEEcceeeccccCCCc
Q 015686 304 NMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~ 321 (402)
+|..+.++.|.|.+..+.
T Consensus 78 sg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 78 SGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred cccccCCceEEEEecCHH
Confidence 999999999999987654
No 60
>PLN03213 repressor of silencing 3; Provisional
Probab=99.18 E-value=4.8e-11 Score=120.72 Aligned_cols=75 Identities=28% Similarity=0.414 Sum_probs=66.8
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeec--hhHHHHHh
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSE--QSTEAALA 302 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~--e~A~~Al~ 302 (402)
..+||||||++++++++|+.+|..||.|.+|.|++ .++ ||||||+|.+. .++.+||.
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR----ETG-----------------RGFAFVEMssdddaEeeKAIS 68 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR----TKG-----------------RSFAYIDFSPSSTNSLTKLFS 68 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec----ccC-----------------CceEEEEecCCcHHHHHHHHH
Confidence 47799999999999999999999999999999952 121 48999999998 67899996
Q ss_pred -ccceEEcceeeccccCCC
Q 015686 303 -FNMAVIGGNHIRLDRACP 320 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~ 320 (402)
|||..|.|+.|+|..+.+
T Consensus 69 aLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 69 TYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred HhcCCeecCceeEEeeccH
Confidence 999999999999999875
No 61
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.18 E-value=7.2e-11 Score=90.59 Aligned_cols=58 Identities=26% Similarity=0.497 Sum_probs=53.5
Q ss_pred eEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 339 VFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 339 LfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
|||+|||+.+++++|+++|+.| |.|..|++..+.. |.++|+|||+|.+.++|..|+.+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~----g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~ 58 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRF----GPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALEL 58 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTS----SBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHH
T ss_pred CEEeCCCCCCCHHHHHHHHHhc----CCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHH
Confidence 7999999999999999999999 8999999999977 99999999999999999999975
No 62
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=4e-11 Score=111.79 Aligned_cols=61 Identities=20% Similarity=0.324 Sum_probs=58.7
Q ss_pred cceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHH
Q 015686 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~ 400 (402)
-++||||||++.++.+.|+++|++| |.|....|+.|+.+|+++|||||+|.+.++|.+|++
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqf----GeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~ 72 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQF----GEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK 72 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHh----CceEEEEEEeccCCccccceeeEEeecHHHHHHHhc
Confidence 4789999999999999999999999 999999999999999999999999999999999975
No 63
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=6.1e-11 Score=111.05 Aligned_cols=81 Identities=22% Similarity=0.279 Sum_probs=71.9
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
+..+|-|.|||.++++.+|.++|..||.|..|-|.++. . +|.++|||||.|.+.++|.+||.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK--~---------------TG~~kGFAFVtF~sRddA~rAI~~ 250 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDK--E---------------TGLSKGFAFVTFESRDDAARAIAD 250 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEcc--c---------------cCcccceEEEEEecHHHHHHHHHH
Confidence 47889999999999999999999999999999886533 2 34577999999999999999996
Q ss_pred ccceEEcceeeccccCCCc
Q 015686 303 FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~ 321 (402)
|||+-++.-.|+|.++.++
T Consensus 251 LnG~gyd~LILrvEwskP~ 269 (270)
T KOG0122|consen 251 LNGYGYDNLILRVEWSKPS 269 (270)
T ss_pred ccCcccceEEEEEEecCCC
Confidence 9999999999999998753
No 64
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.15 E-value=9.1e-11 Score=118.02 Aligned_cols=66 Identities=23% Similarity=0.339 Sum_probs=62.0
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
....++|||+|||+++++++|+++|+.| |.|..|+|++|..+++++|||||+|.++++|..||..|
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~----G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~L 169 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTI----GPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNL 169 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHc
Confidence 3457899999999999999999999999 99999999999999999999999999999999999754
No 65
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=1.4e-10 Score=111.26 Aligned_cols=79 Identities=27% Similarity=0.399 Sum_probs=70.4
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
+-+||||+-|++++++..|+..|+.||+|..|+|+++.+ + ++++|||||+|...-++..|.+
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~v--T---------------gkskGYAFIeye~erdm~~AYK~ 162 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKV--T---------------GKSKGYAFIEYEHERDMKAAYKD 162 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecc--c---------------CCccceEEEEeccHHHHHHHHHh
Confidence 379999999999999999999999999999999976543 2 3467999999999999999996
Q ss_pred ccceEEcceeeccccCC
Q 015686 303 FNMAVIGGNHIRLDRAC 319 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~ 319 (402)
.+|..|+|+.|.|++-.
T Consensus 163 adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 163 ADGIKIDGRRILVDVER 179 (335)
T ss_pred ccCceecCcEEEEEecc
Confidence 99999999999998754
No 66
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.11 E-value=7.5e-10 Score=110.10 Aligned_cols=147 Identities=18% Similarity=0.235 Sum_probs=116.0
Q ss_pred ccEEEEeCCCC-cCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 225 LRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 225 ~~tVfVgNLP~-~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
+..|.|.||.. .+|.+.|..+|+-||.|..|.|.... +-.|+|+|.+...|+.|+.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----------------------kd~ALIQmsd~~qAqLA~~h 354 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----------------------KDNALIQMSDGQQAQLAMEH 354 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----------------------CcceeeeecchhHHHHHHHH
Confidence 57899999965 58999999999999999999985421 1279999999999999996
Q ss_pred ccceEEcceeeccccCCCccccccC-------------------------CC-CCccCCcceeEecCCCCCCCHHHHHHH
Q 015686 303 FNMAVIGGNHIRLDRACPPRKKLKG-------------------------ED-APLYDIKKTVFVGNLPFDVKDEEIYQL 356 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~~~-------------------------~~-~~~~~~~~tLfV~NLp~~~teedL~~~ 356 (402)
|+|+.|.|+.|+|.++.+..-.... .+ ...++++.+|++.|+|.++++++|+.+
T Consensus 355 L~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~ 434 (492)
T KOG1190|consen 355 LEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNL 434 (492)
T ss_pred hhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHh
Confidence 9999999999999988754211100 00 113577889999999999999999999
Q ss_pred hccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 357 FCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 357 F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
|..-+ |.|....+. ++.+-+|++.+.+.++|..|+-+
T Consensus 435 f~~~g---~~vkafkff-----~kd~kmal~q~~sveeA~~ali~ 471 (492)
T KOG1190|consen 435 FQEPG---GQVKAFKFF-----QKDRKMALPQLESVEEAIQALID 471 (492)
T ss_pred hhcCC---ceEEeeeec-----CCCcceeecccCChhHhhhhccc
Confidence 98872 455554443 23467999999999999988744
No 67
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=1.5e-10 Score=108.36 Aligned_cols=66 Identities=26% Similarity=0.325 Sum_probs=62.6
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.....+|.|.||+.++++++|++||.+| |.|..|.|.+|..+|.++|||||+|.+.++|.+||+-|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~f----g~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~L 251 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPF----GPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADL 251 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhcc----CccceeEEEEccccCcccceEEEEEecHHHHHHHHHHc
Confidence 4467899999999999999999999999 99999999999999999999999999999999999865
No 68
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.11 E-value=3.3e-10 Score=85.24 Aligned_cols=72 Identities=38% Similarity=0.613 Sum_probs=62.4
Q ss_pred EEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-ccc
Q 015686 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNM 305 (402)
Q Consensus 227 tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-lng 305 (402)
+|||+|||+++++++|+.+|..||.|..+.+...+.. ..+|+|||.|.+.++|..|+. +++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~------------------~~~~~~~v~f~s~~~a~~a~~~~~~ 62 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT------------------KSKGFAFVEFEDEEDAEKALEALNG 62 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC------------------CcceEEEEEECCHHHHHHHHHHhCC
Confidence 4899999999999999999999999999888543211 145899999999999999996 999
Q ss_pred eEEcceeeccc
Q 015686 306 AVIGGNHIRLD 316 (402)
Q Consensus 306 ~~l~Gr~I~V~ 316 (402)
..+.|+.|.|.
T Consensus 63 ~~~~~~~~~v~ 73 (74)
T cd00590 63 KELGGRPLRVE 73 (74)
T ss_pred CeECCeEEEEe
Confidence 99999998875
No 69
>smart00360 RRM RNA recognition motif.
Probab=99.08 E-value=3.3e-10 Score=84.38 Aligned_cols=70 Identities=36% Similarity=0.545 Sum_probs=59.7
Q ss_pred EeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-ccceEE
Q 015686 230 VGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNMAVI 308 (402)
Q Consensus 230 VgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-lng~~l 308 (402)
|+|||..++.++|+.+|..||.|..+.+...+. . +.++|||||.|.+.++|..|+. +++..+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~--~---------------~~~~~~a~v~f~~~~~a~~a~~~~~~~~~ 63 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKD--T---------------GKSKGFAFVEFESEEDAEKALEALNGKEL 63 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCC--C---------------CCCCceEEEEeCCHHHHHHHHHHcCCCee
Confidence 689999999999999999999999988854321 1 2356999999999999999996 999999
Q ss_pred cceeeccc
Q 015686 309 GGNHIRLD 316 (402)
Q Consensus 309 ~Gr~I~V~ 316 (402)
.|+.|.|.
T Consensus 64 ~~~~~~v~ 71 (71)
T smart00360 64 DGRPLKVK 71 (71)
T ss_pred CCcEEEeC
Confidence 99998763
No 70
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.04 E-value=2.8e-10 Score=111.50 Aligned_cols=155 Identities=21% Similarity=0.196 Sum_probs=120.5
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhc
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~l 303 (402)
...++|+|++.+.+.+.++..++..+|.+....+... ....+++||+++.|...+.+..||.+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~-----------------~~~~~sk~~~s~~f~~ks~~~~~l~~ 149 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSL-----------------EDSLSSKGGLSVHFAGKSQFFAALEE 149 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhh-----------------ccccccccceeeccccHHHHHHHHHh
Confidence 4688999999999999999999999997665554221 12234679999999999999999998
Q ss_pred cce-EEcceeeccccCCCccccc--cCCCCCccCCcceeE-ecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCC
Q 015686 304 NMA-VIGGNHIRLDRACPPRKKL--KGEDAPLYDIKKTVF-VGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMR 379 (402)
Q Consensus 304 ng~-~l~Gr~I~V~~a~~~~k~~--~~~~~~~~~~~~tLf-V~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g 379 (402)
.+. .+.++.+............ ...... ..+..++| |+||++.++.++|+.+|..+ |.|..++++.++.+|
T Consensus 150 s~~~~~~~~~~~~dl~~~~~~~~~n~~~~~~-~~~s~~~~~~~~~~f~~~~d~~~~~~~~~----~~i~~~r~~~~~~s~ 224 (285)
T KOG4210|consen 150 SGSKVLDGNKGEKDLNTRRGLRPKNKLSRLS-SGPSDTIFFVGELDFSLTRDDLKEHFVSS----GEITSVRLPTDEESG 224 (285)
T ss_pred hhccccccccccCcccccccccccchhcccc-cCccccceeecccccccchHHHhhhccCc----CcceeeccCCCCCcc
Confidence 875 6666666665554332111 111111 22344555 99999999999999999998 999999999999999
Q ss_pred CCceEEEEEecCHHHHHHHHH
Q 015686 380 VGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 380 ~skG~aFV~F~s~e~A~~Al~ 400 (402)
.++|||||.|.....+..++.
T Consensus 225 ~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 225 DSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred chhhhhhhhhhhchhHHHHhh
Confidence 999999999999999998876
No 71
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.02 E-value=3.2e-10 Score=111.85 Aligned_cols=153 Identities=18% Similarity=0.246 Sum_probs=113.1
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhc----CCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHH
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKF----GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~----G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~A 300 (402)
.-.|.+++||+++++.++..||..- |.+..|.+++.+ + ++-.|-|||.|..++.|+.|
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp--d----------------grpTGdAFvlfa~ee~aq~a 222 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP--D----------------GRPTGDAFVLFACEEDAQFA 222 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC--C----------------CCcccceEEEecCHHHHHHH
Confidence 3568899999999999999999732 234455554422 1 23458999999999999999
Q ss_pred HhccceEEcceeeccccCCCccc----------cccC---------C---CCCccCCcceeEecCCCCCCCHHHHHHHhc
Q 015686 301 LAFNMAVIGGNHIRLDRACPPRK----------KLKG---------E---DAPLYDIKKTVFVGNLPFDVKDEEIYQLFC 358 (402)
Q Consensus 301 l~lng~~l~Gr~I~V~~a~~~~k----------~~~~---------~---~~~~~~~~~tLfV~NLp~~~teedL~~~F~ 358 (402)
|.-|...|.-|.|.+-++....- .... . ..+......+|.+++||+..+.++|..||.
T Consensus 223 L~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~Flg 302 (508)
T KOG1365|consen 223 LRKHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLG 302 (508)
T ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHH
Confidence 98888888888888766542100 0000 0 011123467999999999999999999998
Q ss_pred cCCCCCCCeEE--EEEeecCCCCCCceEEEEEecCHHHHHHHH
Q 015686 359 GLNDLESSVEA--VRVIRHPHMRVGKGIAYVLFKTRLPIWLLR 399 (402)
Q Consensus 359 ~f~~~~G~I~~--vrI~~d~~~g~skG~aFV~F~s~e~A~~Al 399 (402)
.|. -.|.. |.++.+ ..|++.|-|||+|.+.+.|.+|.
T Consensus 303 dFa---~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaa 341 (508)
T KOG1365|consen 303 DFA---TDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAA 341 (508)
T ss_pred HHh---hhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHH
Confidence 883 24544 667777 67999999999999999998875
No 72
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.02 E-value=4.7e-10 Score=102.86 Aligned_cols=78 Identities=24% Similarity=0.408 Sum_probs=69.9
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
..+|-|-||.+-++.++|+.+|++||.|-.|-|.+++. +.+++|||||.|....+|+.||. |
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~-----------------Tr~sRgFaFVrf~~k~daedA~dam 75 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRY-----------------TRQSRGFAFVRFHDKRDAEDALDAM 75 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccc-----------------cccccceeEEEeeecchHHHHHHhh
Confidence 46799999999999999999999999999999976553 23467999999999999999995 9
Q ss_pred cceEEcceeeccccCC
Q 015686 304 NMAVIGGNHIRLDRAC 319 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~ 319 (402)
+|.+|+|+.|.|+.|.
T Consensus 76 DG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 76 DGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeeccceeeehhhh
Confidence 9999999999998874
No 73
>smart00362 RRM_2 RNA recognition motif.
Probab=98.99 E-value=1.8e-09 Score=80.74 Aligned_cols=59 Identities=32% Similarity=0.548 Sum_probs=54.6
Q ss_pred eeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 338 tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
+|||+|||..++.++|+++|..| |.|..+.++.++ +.++|+|||+|.+...|..|+..|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~----g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~ 59 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKF----GPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEAL 59 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhc----CCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHh
Confidence 58999999999999999999999 999999999875 778999999999999999998754
No 74
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.98 E-value=1.3e-09 Score=104.47 Aligned_cols=59 Identities=24% Similarity=0.253 Sum_probs=54.7
Q ss_pred cceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
.++|||+|||+.+++++|+++|+.| |.|.+|+|+++.. ++|||||+|.++++|..||.|
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~----G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllL 62 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFS----GDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLL 62 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHh
Confidence 4799999999999999999999999 9999999999854 579999999999999999964
No 75
>smart00360 RRM RNA recognition motif.
Probab=98.95 E-value=2.7e-09 Score=79.35 Aligned_cols=58 Identities=34% Similarity=0.542 Sum_probs=54.4
Q ss_pred ecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 341 VGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 341 V~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
|+|||..+++++|+++|..| |.|..+.+..++.++.++|||||+|.++++|..|++.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~----g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~ 58 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKF----GKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEAL 58 (71)
T ss_pred CCCCCcccCHHHHHHHHHhh----CCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHc
Confidence 68999999999999999999 99999999998778899999999999999999999764
No 76
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=3.8e-09 Score=109.39 Aligned_cols=157 Identities=18% Similarity=0.214 Sum_probs=119.3
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
...+||+|||..+++.++.++...||++...++..... .+.++||||.+|.+......|++ |
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~-----------------~g~skg~af~ey~dpsvtd~A~agL 351 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSA-----------------TGNSKGFAFCEYCDPSVTDQAIAGL 351 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccc-----------------cccccceeeeeeeCCcchhhhhccc
Confidence 56799999999999999999999999999888854332 23467999999999999999997 9
Q ss_pred cceEEcceeeccccCCCccccccCCC---------------CCccCCcceeEecCCC--CCC-C-------HHHHHHHhc
Q 015686 304 NMAVIGGNHIRLDRACPPRKKLKGED---------------APLYDIKKTVFVGNLP--FDV-K-------DEEIYQLFC 358 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~---------------~~~~~~~~tLfV~NLp--~~~-t-------eedL~~~F~ 358 (402)
||+.+.+..|.|+.++.......... .....+...|++.|+= ..+ . -++|+.-|.
T Consensus 352 nGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~ 431 (500)
T KOG0120|consen 352 NGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECA 431 (500)
T ss_pred chhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhc
Confidence 99999999999999876533322111 1123345666767661 111 1 245666778
Q ss_pred cCCCCCCCeEEEEEeec-C--CCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 359 GLNDLESSVEAVRVIRH-P--HMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 359 ~f~~~~G~I~~vrI~~d-~--~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
+| |.|..|.|+++ . +..-+-|-.||+|.+.++|++|+..|
T Consensus 432 k~----g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L 474 (500)
T KOG0120|consen 432 KF----GAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEEL 474 (500)
T ss_pred cc----CceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHc
Confidence 88 99999999887 2 23345677899999999999999876
No 77
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.92 E-value=1.4e-09 Score=111.75 Aligned_cols=79 Identities=25% Similarity=0.410 Sum_probs=70.4
Q ss_pred cEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-cc
Q 015686 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FN 304 (402)
Q Consensus 226 ~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-ln 304 (402)
+.|||||||+++++++|..+|+..|.|.++++..++ .++. .+|||||+|.+.+.+..|++ ||
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~--~tG~---------------~~G~~f~~~~~~~~~~~a~~~lN 81 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDR--ETGK---------------PKGFGFCEFTDEETAERAIRNLN 81 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccc--cCCC---------------cCceeeEecCchhhHHHHHHhcC
Confidence 889999999999999999999999999999996543 2333 55999999999999999997 99
Q ss_pred ceEEcceeeccccCCCc
Q 015686 305 MAVIGGNHIRLDRACPP 321 (402)
Q Consensus 305 g~~l~Gr~I~V~~a~~~ 321 (402)
|..+.||.|+|.++...
T Consensus 82 g~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 82 GAEFNGRKLRVNYASNR 98 (435)
T ss_pred CcccCCceEEeeccccc
Confidence 99999999999998643
No 78
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.91 E-value=3.3e-09 Score=98.74 Aligned_cols=63 Identities=32% Similarity=0.565 Sum_probs=60.5
Q ss_pred cceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.++|||+|||+.+++++|+.+|..| |.|..|.|+.|+.+|.++|||||.|.+.++|..|++.|
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~----g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~ 177 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKF----GPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEEL 177 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhc----CceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHc
Confidence 6999999999999999999999999 99999999999889999999999999999999999865
No 79
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=1e-08 Score=100.85 Aligned_cols=78 Identities=22% Similarity=0.410 Sum_probs=68.3
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
-..|||..+.++.++++|+..|+.||+|..|.+.+.+.. +.++|||||+|.+..+...|+. |
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~-----------------~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTG-----------------RGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCC-----------------CCccceeeEEeccccchHHHhhhc
Confidence 567999999999999999999999999999999665421 2267999999999999999996 9
Q ss_pred cceEEcceeeccccCC
Q 015686 304 NMAVIGGNHIRLDRAC 319 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~ 319 (402)
|-..|.|..|+|-.+.
T Consensus 273 NlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGKCV 288 (544)
T ss_pred chhhcccceEeccccc
Confidence 9999999999997654
No 80
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.1e-09 Score=101.39 Aligned_cols=81 Identities=28% Similarity=0.445 Sum_probs=71.6
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..||||||+|.-.+++.-|...|-.||.|..|.++.+.. ..+.||||||+|.-.++|.+||.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDye-----------------sqkHRgFgFVefe~aEDAaaAiDN 71 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYE-----------------SQKHRGFGFVEFEEAEDAAAAIDN 71 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchh-----------------cccccceeEEEeeccchhHHHhhc
Confidence 368999999999999999999999999999999855432 12367999999999999999995
Q ss_pred ccceEEcceeeccccCCCc
Q 015686 303 FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~ 321 (402)
||+..|.||.|+|.++.+.
T Consensus 72 MnesEL~GrtirVN~AkP~ 90 (298)
T KOG0111|consen 72 MNESELFGRTIRVNLAKPE 90 (298)
T ss_pred CchhhhcceeEEEeecCCc
Confidence 9999999999999999875
No 81
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.90 E-value=4.5e-09 Score=99.42 Aligned_cols=60 Identities=25% Similarity=0.276 Sum_probs=55.1
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
...+|||+||++.+|+++|+++|+.| |.|.+|+|++|. ...|||||+|.++.+|..||.|
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~----G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllL 63 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHC----GAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLL 63 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhc----CCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhc
Confidence 35799999999999999999999999 999999999984 4668999999999999999965
No 82
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.89 E-value=3e-09 Score=103.43 Aligned_cols=64 Identities=23% Similarity=0.353 Sum_probs=57.3
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
....++|+|.||||...+-||+.+|.+| |.|.+|.|+.+ +-| +||||||+|.+.++|.+|-..|
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kf----G~VldVEIIfN-ERG-SKGFGFVTmen~~dadRARa~L 156 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKF----GKVLDVEIIFN-ERG-SKGFGFVTMENPADADRARAEL 156 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhh----CceeeEEEEec-cCC-CCccceEEecChhhHHHHHHHh
Confidence 3456889999999999999999999999 99999999997 445 8999999999999999997643
No 83
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.88 E-value=8.4e-09 Score=104.93 Aligned_cols=151 Identities=19% Similarity=0.215 Sum_probs=110.8
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeE-EEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhc
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDS-VRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~-vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~l 303 (402)
...|-+++|||.+|+++|.+||+..-.|.. |.++.+ .. ++..|-|||+|.+.+.|++||..
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d---~r---------------gR~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD---QR---------------GRPTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeecc---CC---------------CCcccceEEEecCHHHHHHHHHH
Confidence 578999999999999999999998765554 323221 11 23569999999999999999987
Q ss_pred cceEEcceeeccccCCCcc---------------------ccccC-----------------------------------
Q 015686 304 NMAVIGGNHIRLDRACPPR---------------------KKLKG----------------------------------- 327 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~---------------------k~~~~----------------------------------- 327 (402)
|...|..|.|.|..+.... ....+
T Consensus 165 hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d 244 (510)
T KOG4211|consen 165 HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQD 244 (510)
T ss_pred HHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccc
Confidence 7788877877776543110 00000
Q ss_pred ---------CCC--------C----------ccCC-cceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCC
Q 015686 328 ---------EDA--------P----------LYDI-KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMR 379 (402)
Q Consensus 328 ---------~~~--------~----------~~~~-~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g 379 (402)
... + ...+ ...++.++||+..+..+|..+|... ....|.|-.. .+|
T Consensus 245 ~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl-----~p~~v~i~ig-~dG 318 (510)
T KOG4211|consen 245 YGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPL-----NPYRVHIEIG-PDG 318 (510)
T ss_pred cccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCC-----CceeEEEEeC-CCC
Confidence 000 0 0011 2578889999999999999999986 4556667666 459
Q ss_pred CCceEEEEEecCHHHHHHHH
Q 015686 380 VGKGIAYVLFKTRLPIWLLR 399 (402)
Q Consensus 380 ~skG~aFV~F~s~e~A~~Al 399 (402)
+..|-|+|+|.++++|..||
T Consensus 319 r~TGEAdveF~t~edav~Am 338 (510)
T KOG4211|consen 319 RATGEADVEFATGEDAVGAM 338 (510)
T ss_pred ccCCcceeecccchhhHhhh
Confidence 99999999999999999987
No 84
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.88 E-value=2.7e-09 Score=97.92 Aligned_cols=69 Identities=20% Similarity=0.270 Sum_probs=64.4
Q ss_pred CCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 330 APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 330 ~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.+..+...+|.|-||-+.++.++|+.+|+.| |.|-.|.|++|+.++.++|||||.|....+|+.||++|
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekY----G~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~dam 75 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKY----GRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAM 75 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHh----CcccceecccccccccccceeEEEeeecchHHHHHHhh
Confidence 4456677899999999999999999999999 99999999999999999999999999999999999876
No 85
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.87 E-value=3.1e-09 Score=90.89 Aligned_cols=64 Identities=23% Similarity=0.305 Sum_probs=58.8
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.++||||+||.+.+++++|+++|+.+ |.|..|.+-.|+.+-.+-|||||+|-+.++|..||+.+
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~c----G~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryi 98 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKC----GDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYI 98 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhc----cchheeEeccccCCcCccceEEEEEecchhHHHHHHHh
Confidence 46899999999999999999999999 99999877778888889999999999999999999753
No 86
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.86 E-value=2.7e-09 Score=91.95 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=69.3
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
....|||.++...+++++|...|..||+|.+|.|..+. . +|-.+|||+|+|.+...|+.|+.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDR--R---------------tGy~KGYaLvEYet~keAq~A~~~ 133 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDR--R---------------TGYVKGYALVEYETLKEAQAAIDA 133 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeecccc--c---------------cccccceeeeehHhHHHHHHHHHh
Confidence 35789999999999999999999999999999884321 1 23357999999999999999995
Q ss_pred ccceEEcceeeccccCCC
Q 015686 303 FNMAVIGGNHIRLDRACP 320 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~ 320 (402)
+||..|.|..|.|+++..
T Consensus 134 ~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 134 LNGAELLGQNVSVDWCFV 151 (170)
T ss_pred ccchhhhCCceeEEEEEe
Confidence 999999999999998753
No 87
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.85 E-value=5e-09 Score=100.74 Aligned_cols=64 Identities=20% Similarity=0.350 Sum_probs=60.7
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHH
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~ 400 (402)
.++-+||||+-|++.+++..|+..|+.| |.|+.|+|++|..+|+++|||||+|.+.-+...|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~Y----G~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK 161 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKY----GPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYK 161 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhc----CcceeEEEeeecccCCccceEEEEeccHHHHHHHHH
Confidence 3577999999999999999999999999 999999999999999999999999999999988875
No 88
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.81 E-value=2e-08 Score=75.32 Aligned_cols=60 Identities=37% Similarity=0.587 Sum_probs=54.7
Q ss_pred eeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 338 tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
+|+|+|||..+++++|+++|..| |.|..+.+..++.+ .++|+|||+|.+.++|..|++.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~----g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~ 60 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKF----GKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEAL 60 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhc----CCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHh
Confidence 58999999999999999999999 99999999988654 67999999999999999999753
No 89
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.79 E-value=5.2e-10 Score=119.63 Aligned_cols=131 Identities=27% Similarity=0.300 Sum_probs=110.0
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
-+...++||+||+..+.+.+|...|..+|.+..+++. . ..+.+ +-+|+|||.|..++++.+||
T Consensus 664 ~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~-~-h~n~~---------------~~rG~~Y~~F~~~~~~~aaV 726 (881)
T KOG0128|consen 664 IRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIV-I-HKNEK---------------RFRGKAYVEFLKPEHAGAAV 726 (881)
T ss_pred HHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHH-H-Hhhcc---------------ccccceeeEeecCCchhhhh
Confidence 3456789999999999999999999999988777764 1 22222 24599999999999999999
Q ss_pred hccceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCC
Q 015686 302 AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (402)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~s 381 (402)
.++...+.| ...|+|+|+|+..|.+.|+.+|..+ |.+..++++..+ .|++
T Consensus 727 ~f~d~~~~g-------------------------K~~v~i~g~pf~gt~e~~k~l~~~~----gn~~~~~~vt~r-~gkp 776 (881)
T KOG0128|consen 727 AFRDSCFFG-------------------------KISVAISGPPFQGTKEELKSLASKT----GNVTSLRLVTVR-AGKP 776 (881)
T ss_pred hhhhhhhhh-------------------------hhhhheeCCCCCCchHHHHhhcccc----CCccccchhhhh-cccc
Confidence 876555555 2459999999999999999999999 999999988874 5999
Q ss_pred ceEEEEEecCHHHHHHHH
Q 015686 382 KGIAYVLFKTRLPIWLLR 399 (402)
Q Consensus 382 kG~aFV~F~s~e~A~~Al 399 (402)
+|.|||.|.+..+|.+++
T Consensus 777 kg~a~v~y~~ea~~s~~~ 794 (881)
T KOG0128|consen 777 KGKARVDYNTEADASRKV 794 (881)
T ss_pred ccceeccCCCcchhhhhc
Confidence 999999999999888764
No 90
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.79 E-value=9.4e-09 Score=75.80 Aligned_cols=55 Identities=27% Similarity=0.459 Sum_probs=46.8
Q ss_pred HHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-ccceEEcceeeccccC
Q 015686 242 LIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNMAVIGGNHIRLDRA 318 (402)
Q Consensus 242 L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-lng~~l~Gr~I~V~~a 318 (402)
|+.+|++||.|..+.+... .+|+|||+|.+.++|+.|+. |||..|.|+.|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~----------------------~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKK----------------------KRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETT----------------------STTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeC----------------------CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6889999999999988321 12799999999999999996 9999999999999864
No 91
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=2.1e-09 Score=99.40 Aligned_cols=133 Identities=23% Similarity=0.292 Sum_probs=104.5
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
.+||||+||...++++-|.++|-+.|+|..|.|+... + ... + ||||.|.++-++..|+. +
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~--d-~~~---------------k-Fa~v~f~~E~sv~~a~~L~ 69 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ--D-QEQ---------------K-FAYVFFPNENSVQLAGQLE 69 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc--c-CCC---------------c-eeeeecccccchhhhhhhc
Confidence 5899999999999999999999999999988884422 1 111 2 99999999999999998 9
Q ss_pred cceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCce
Q 015686 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG 383 (402)
||..+.++.|.|.+-+.... .- |...++.+.+...|+.. |.+..+|+.++.+ |+++.
T Consensus 70 ng~~l~~~e~q~~~r~G~sh-------------ap-----ld~r~~~ei~~~v~s~a----~p~~~~R~~~~~d-~rnrn 126 (267)
T KOG4454|consen 70 NGDDLEEDEEQRTLRCGNSH-------------AP-----LDERVTEEILYEVFSQA----GPIEGVRIPTDND-GRNRN 126 (267)
T ss_pred ccchhccchhhcccccCCCc-------------ch-----hhhhcchhhheeeeccc----CCCCCcccccccc-CCccC
Confidence 99999998888765432100 00 44567888999999988 8999999999965 88999
Q ss_pred EEEEEecCHHHHHHHH
Q 015686 384 IAYVLFKTRLPIWLLR 399 (402)
Q Consensus 384 ~aFV~F~s~e~A~~Al 399 (402)
++|+.+-.-...-.++
T Consensus 127 ~~~~~~qr~~~~P~~~ 142 (267)
T KOG4454|consen 127 FGFVTYQRLCAVPFAL 142 (267)
T ss_pred ccchhhhhhhcCcHHh
Confidence 9999886554444433
No 92
>PLN03213 repressor of silencing 3; Provisional
Probab=98.75 E-value=1.6e-08 Score=102.81 Aligned_cols=60 Identities=22% Similarity=0.336 Sum_probs=53.9
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCH--HHHHHHHHhC
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR--LPIWLLRDVT 402 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~--e~A~~Al~~l 402 (402)
...+||||||++.+++++|+.+|..| |.|..|.|++ .+| ||||||+|.+. .++.+||..|
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeF----GsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaL 70 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPM----GTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTY 70 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHh
Confidence 34789999999999999999999999 9999999994 566 99999999987 6789998764
No 93
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.75 E-value=1.7e-08 Score=100.53 Aligned_cols=147 Identities=16% Similarity=0.242 Sum_probs=106.3
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
.++.|.++|||+++++.+|..++..||.|..+.+.. .+-.|||+|.+.++|...+.
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lk-----------------------GknQAflem~d~~sAvtmv~~ 83 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLK-----------------------GKNQAFLEMADEESAVTMVNY 83 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeec-----------------------cchhhhhhhcchhhhhheeec
Confidence 478899999999999999999999999998887632 11279999999999877443
Q ss_pred cc--ceEEcceeeccccCCCccccc--------------------------cC-----CCCCccCCcceeEecCCCCCCC
Q 015686 303 FN--MAVIGGNHIRLDRACPPRKKL--------------------------KG-----EDAPLYDIKKTVFVGNLPFDVK 349 (402)
Q Consensus 303 ln--g~~l~Gr~I~V~~a~~~~k~~--------------------------~~-----~~~~~~~~~~tLfV~NLp~~~t 349 (402)
+. --.+.|+.|.|+++....-+. .. +......+-.+++|+||-+.++
T Consensus 84 y~~~~p~lr~~~~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVs 163 (492)
T KOG1190|consen 84 YTSVTPVLRGQPIYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVS 163 (492)
T ss_pred ccccCccccCcceeehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeE
Confidence 21 225678888887754220000 00 0111122345788999999999
Q ss_pred HHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceE-EEEEecCHHHHHHHHHhC
Q 015686 350 DEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGI-AYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 350 eedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~-aFV~F~s~e~A~~Al~~l 402 (402)
-+-|.++|+.| |.|..|.-... +-|| |.|+|.+...|..|--+|
T Consensus 164 lDVLHqvFS~f----G~VlKIiTF~K-----nn~FQALvQy~d~~sAq~AK~aL 208 (492)
T KOG1190|consen 164 LDVLHQVFSKF----GFVLKIITFTK-----NNGFQALVQYTDAVSAQAAKLAL 208 (492)
T ss_pred HHHHHHHHhhc----ceeEEEEEEec-----ccchhhhhhccchhhHHHHHHhc
Confidence 99999999999 99987633222 3455 999999999998886543
No 94
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.74 E-value=1.1e-09 Score=98.66 Aligned_cols=62 Identities=19% Similarity=0.506 Sum_probs=55.8
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHH
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLL 398 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~A 398 (402)
+..+.-|||||||+.+|+.||.-+|++| |.|..|.+++|..||+++||||+.|.+..+...|
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqy----Ge~vdinLiRDk~TGKSKGFaFLcYEDQRSTILA 93 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQY----GEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILA 93 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeecc----CceEEEEEEecCCCCcccceEEEEecCccceEEE
Confidence 4457789999999999999999999999 9999999999999999999999999886654433
No 95
>smart00361 RRM_1 RNA recognition motif.
Probab=98.74 E-value=2.9e-08 Score=76.90 Aligned_cols=62 Identities=23% Similarity=0.388 Sum_probs=49.1
Q ss_pred HHHHHHHhh----hcCCeeEEE-EeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-ccceEEccee
Q 015686 239 KKTLIKEFI----KFGEIDSVR-IRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNMAVIGGNH 312 (402)
Q Consensus 239 ee~L~~~F~----~~G~I~~vr-i~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-lng~~l~Gr~ 312 (402)
+++|+.+|+ .||.|.+|. +...+... .+.++|||||.|.+.++|..|+. |||..+.|+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~---------------~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~ 66 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGY---------------ENHKRGNVYITFERSEDAARAIVDLNGRYFDGRT 66 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCC---------------CCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 578888898 999999885 43322111 12356999999999999999996 9999999999
Q ss_pred ecc
Q 015686 313 IRL 315 (402)
Q Consensus 313 I~V 315 (402)
|.+
T Consensus 67 l~~ 69 (70)
T smart00361 67 VKA 69 (70)
T ss_pred EEe
Confidence 976
No 96
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.72 E-value=2.6e-08 Score=103.22 Aligned_cols=152 Identities=19% Similarity=0.359 Sum_probs=118.5
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhc-----------C-CeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEE
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKF-----------G-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYI 289 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~-----------G-~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV 289 (402)
....+.+||+++|+.++++.+..+|..- | .|..+.|.. ..+|||+
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~-----------------------~~nfa~i 228 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL-----------------------EKNFAFI 228 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc-----------------------cccceeE
Confidence 3456789999999999999999999853 2 244444411 3469999
Q ss_pred EEeechhHHHHHhccceEEcceeeccccCCCcccccc--------------CCCCCccCCcceeEecCCCCCCCHHHHHH
Q 015686 290 VFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLK--------------GEDAPLYDIKKTVFVGNLPFDVKDEEIYQ 355 (402)
Q Consensus 290 ~F~s~e~A~~Al~lng~~l~Gr~I~V~~a~~~~k~~~--------------~~~~~~~~~~~tLfV~NLp~~~teedL~~ 355 (402)
+|.+.+.|..|+.+++..+.|+.+.+........-.. ............+||+|||..+++.++++
T Consensus 229 e~~s~~~at~~~~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~E 308 (500)
T KOG0120|consen 229 EFRSISEATEAMALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKE 308 (500)
T ss_pred EecCCCchhhhhcccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHH
Confidence 9999999999999999999998888754332111000 00111234567899999999999999999
Q ss_pred HhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHH
Q 015686 356 LFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 356 ~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~ 400 (402)
+...| |.+...+++.|..+|.++||||.+|.+..-...|+.
T Consensus 309 ll~~f----g~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~a 349 (500)
T KOG0120|consen 309 LLDSF----GPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIA 349 (500)
T ss_pred HHHhc----ccchhheeecccccccccceeeeeeeCCcchhhhhc
Confidence 99999 999999999999999999999999999877766664
No 97
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=4.2e-08 Score=81.14 Aligned_cols=61 Identities=23% Similarity=0.527 Sum_probs=54.8
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
-.+.|||+|||+.+|.+++.++|..| |.|..|||--.+. .+|-|||.|.+..+|.+|++-|
T Consensus 17 vnriLyirNLp~~ITseemydlFGky----g~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhl 77 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKY----GTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHL 77 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcc----cceEEEEecCccC---cCceEEEEehHhhhHHHHHHHh
Confidence 46889999999999999999999999 9999999965544 6899999999999999998743
No 98
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.67 E-value=1.9e-07 Score=92.54 Aligned_cols=158 Identities=18% Similarity=0.176 Sum_probs=112.9
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhcc
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ln 304 (402)
...|..++|||..++.+|..+|.......--+.+- .....+ --|.|.|.|.+.+.-..|++.+
T Consensus 60 ~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKO----G~~qgr-------------Rnge~lvrf~d~e~RdlalkRh 122 (508)
T KOG1365|consen 60 NVVVRARGLPWQSSDQDIARFFKGLNIANGGRALC----LNAQGR-------------RNGEALVRFVDPEGRDLALKRH 122 (508)
T ss_pred ceEEEecCCCCCcccCCHHHHHhhhhccccceeee----ehhhhc-------------cccceEEEecCchhhhhhhHhh
Confidence 45678899999999999999998653221111110 011111 2389999999999999999988
Q ss_pred ceEEcceeeccccCCCcccccc-CCC---CCccCC---cceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCC
Q 015686 305 MAVIGGNHIRLDRACPPRKKLK-GED---APLYDI---KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPH 377 (402)
Q Consensus 305 g~~l~Gr~I~V~~a~~~~k~~~-~~~---~~~~~~---~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~ 377 (402)
.+.+.+|.|.|-.+....--.. +.. ...+.+ --.|.+++||+++++.|+..||..-..+.|.++.|-+++.+
T Consensus 123 khh~g~ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp- 201 (508)
T KOG1365|consen 123 KHHMGTRYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP- 201 (508)
T ss_pred hhhccCCceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-
Confidence 8899999999988764321111 000 111222 34677799999999999999996443334667777777664
Q ss_pred CCCCceEEEEEecCHHHHHHHHH
Q 015686 378 MRVGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 378 ~g~skG~aFV~F~s~e~A~~Al~ 400 (402)
.|+..|-|||.|...++|+.||.
T Consensus 202 dgrpTGdAFvlfa~ee~aq~aL~ 224 (508)
T KOG1365|consen 202 DGRPTGDAFVLFACEEDAQFALR 224 (508)
T ss_pred CCCcccceEEEecCHHHHHHHHH
Confidence 48999999999999999999984
No 99
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.67 E-value=2e-08 Score=90.71 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=60.6
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
...||||+||+..++++.|+++|-+. |.|.+|+|++|..++..+|||||+|.+.++|.=|+++|
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqa----gpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikil 71 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQA----GPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKIL 71 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhc----CceeeeecchhhhcccccceeEEEEechhhhHHHHHHH
Confidence 45799999999999999999999999 99999999999999999999999999999999999875
No 100
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.66 E-value=6e-08 Score=95.11 Aligned_cols=77 Identities=29% Similarity=0.555 Sum_probs=67.8
Q ss_pred CCCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHH
Q 015686 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (402)
Q Consensus 221 e~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~A 300 (402)
++....|||||||-..+++.+|+.+|.+||.|.+|++.. .+|+|||.|.+.++|+.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~-----------------------~~~CAFv~ftTR~aAE~A 280 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP-----------------------RKGCAFVTFTTREAAEKA 280 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec-----------------------ccccceeeehhhHHHHHH
Confidence 344578999999998999999999999999999998832 236999999999999999
Q ss_pred Hh--ccceEEcceeeccccCCC
Q 015686 301 LA--FNMAVIGGNHIRLDRACP 320 (402)
Q Consensus 301 l~--lng~~l~Gr~I~V~~a~~ 320 (402)
.. +|...|+|++|.|.|..+
T Consensus 281 ae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 281 AEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred HHhhcceeeecceEEEEEeCCC
Confidence 84 888889999999998776
No 101
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.64 E-value=4e-08 Score=88.28 Aligned_cols=59 Identities=24% Similarity=0.264 Sum_probs=53.2
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
-.+.|||+||+..+++.+|..+|..| |.|..|-|.+. +.|||||+|.++.+|..|+..|
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~y----G~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~L 67 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKY----GPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYL 67 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhc----CcceeEEEeec-----CCCceEEeccCcccHHHHHhhc
Confidence 36889999999999999999999999 99999877664 6799999999999999998776
No 102
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.60 E-value=5.6e-08 Score=103.32 Aligned_cols=110 Identities=23% Similarity=0.306 Sum_probs=84.4
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
-.++|||||+|+..+++.+|..+|+.||.|.+|.++. ++|+|||++....+|.+||.
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----------------------~R~cAfI~M~~RqdA~kalq 475 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----------------------PRGCAFIKMVRRQDAEKALQ 475 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----------------------CCceeEEEEeehhHHHHHHH
Confidence 3579999999999999999999999999999998842 45899999999999999995
Q ss_pred -ccceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhcc
Q 015686 303 -FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCG 359 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~ 359 (402)
|+...+.++.|+|.|+.....+..- . .--...|=|.-||+..-..+|..+++.
T Consensus 476 kl~n~kv~~k~Iki~Wa~g~G~kse~---k-~~wD~~lGVt~IP~~kLt~dl~~~~eg 529 (894)
T KOG0132|consen 476 KLSNVKVADKTIKIAWAVGKGPKSEY---K-DYWDVELGVTYIPWEKLTDDLEAWCEG 529 (894)
T ss_pred HHhcccccceeeEEeeeccCCcchhh---h-hhhhcccCeeEeehHhcCHHHHHhhhh
Confidence 9999999999999999754322200 0 000122344556776555668877764
No 103
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.60 E-value=6.4e-08 Score=99.57 Aligned_cols=62 Identities=23% Similarity=0.427 Sum_probs=59.9
Q ss_pred ceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
+.|||||+|+++++++|..+|... |.|.+++++.|+.+|.++||||++|.+.+.|..|++-|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~----g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~l 80 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGV----GPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNL 80 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhcc----CccceeeecccccCCCcCceeeEecCchhhHHHHHHhc
Confidence 899999999999999999999998 99999999999999999999999999999999999754
No 104
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.59 E-value=6.9e-08 Score=83.39 Aligned_cols=65 Identities=17% Similarity=0.153 Sum_probs=61.5
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.....|||.++...+++++|.+.|..| |.|++|.+-.|+.+|..+|||+|+|.+..+|+.||+.|
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dy----GeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~ 134 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADY----GEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDAL 134 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhc----ccccceeeccccccccccceeeeehHhHHHHHHHHHhc
Confidence 346899999999999999999999999 99999999999999999999999999999999999865
No 105
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.57 E-value=5.2e-08 Score=93.59 Aligned_cols=73 Identities=16% Similarity=0.310 Sum_probs=67.3
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
.+.+|+||||.+.++..+|+..|.+||+|..+.|. ++|+||.|.-.++|..|+.
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-------------------------kdy~fvh~d~~eda~~air~ 131 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-------------------------KDYAFVHFDRAEDAVEAIRG 131 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeee-------------------------cceeEEEEeeccchHHHHhc
Confidence 46789999999999999999999999999999983 3699999999999999996
Q ss_pred ccceEEcceeeccccCCCc
Q 015686 303 FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~ 321 (402)
||+..|.|++++|+.+..+
T Consensus 132 l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 132 LDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred ccccccccceeeeeeeccc
Confidence 9999999999999998754
No 106
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1e-07 Score=93.68 Aligned_cols=80 Identities=23% Similarity=0.271 Sum_probs=70.2
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH-hc
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al-~l 303 (402)
...|||-.|.+-++.++|.-+|+.||.|.+|.++++..+ |-+.-||||+|.+.+++++|. +|
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~kt-----------------gdsLqyaFiEFen~escE~AyFKM 301 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKT-----------------GDSLQYAFIEFENKESCEQAYFKM 301 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhcccceeeeEEecccc-----------------cchhheeeeeecchhhHHHHHhhh
Confidence 577999999999999999999999999999999775422 224469999999999999998 79
Q ss_pred cceEEcceeeccccCCCc
Q 015686 304 NMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~ 321 (402)
++.+|..+.|+|+++..-
T Consensus 302 dNvLIDDrRIHVDFSQSV 319 (479)
T KOG0415|consen 302 DNVLIDDRRIHVDFSQSV 319 (479)
T ss_pred cceeeccceEEeehhhhh
Confidence 999999999999988643
No 107
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.52 E-value=1.2e-07 Score=97.83 Aligned_cols=81 Identities=15% Similarity=0.361 Sum_probs=70.2
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...+.|||.+|...+-..+|+.+|++||.|....+++ +...|- .++||||++.+.+.|.+||.
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVT----NaRsPG-------------aRCYGfVTMSts~eAtkCI~ 465 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVT----NARSPG-------------ARCYGFVTMSTSAEATKCIE 465 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeee----cCCCCC-------------cceeEEEEecchHHHHHHHH
Confidence 4478899999999999999999999999999988843 333332 45899999999999999996
Q ss_pred -ccceEEcceeeccccCCC
Q 015686 303 -FNMAVIGGNHIRLDRACP 320 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~ 320 (402)
||.+.|+|+.|.|..+..
T Consensus 466 hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 466 HLHRTELHGRMISVEKAKN 484 (940)
T ss_pred Hhhhhhhcceeeeeeeccc
Confidence 999999999999998764
No 108
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.50 E-value=6.9e-08 Score=104.11 Aligned_cols=145 Identities=19% Similarity=0.244 Sum_probs=113.2
Q ss_pred CcCCCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHH
Q 015686 219 DDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (402)
Q Consensus 219 ~~e~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~ 298 (402)
.++...++|||+|||+..+++.+|+..|..+|.|..|.|-+.++ ++..-||||.|.+...+.
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~------------------~~esa~~f~~~~n~dmtp 427 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI------------------KTESAYAFVSLLNTDMTP 427 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC------------------CcccchhhhhhhccccCc
Confidence 35566789999999999999999999999999999999843221 123459999999999988
Q ss_pred HHH-hccceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCC
Q 015686 299 AAL-AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPH 377 (402)
Q Consensus 299 ~Al-~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~ 377 (402)
.|. .+.+..|..-.+++.+..+ ...+.+.++|++|+.-+....|...|..| |.|..|.+-.
T Consensus 428 ~ak~e~s~~~I~~g~~r~glG~~-----------kst~ttr~~sgglg~w~p~~~l~r~fd~f----Gpir~Idy~h--- 489 (975)
T KOG0112|consen 428 SAKFEESGPLIGNGTHRIGLGQP-----------KSTPTTRLQSGGLGPWSPVSRLNREFDRF----GPIRIIDYRH--- 489 (975)
T ss_pred ccchhhcCCccccCccccccccc-----------ccccceeeccCCCCCCChHHHHHHHhhcc----Ccceeeeccc---
Confidence 887 5777766444444444321 23457889999999999999999999999 8898766532
Q ss_pred CCCCceEEEEEecCHHHHHHHHHhC
Q 015686 378 MRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 378 ~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.--||||.|.+...|++|+.-|
T Consensus 490 ---gq~yayi~yes~~~aq~a~~~~ 511 (975)
T KOG0112|consen 490 ---GQPYAYIQYESPPAAQAATHDM 511 (975)
T ss_pred ---CCcceeeecccCccchhhHHHH
Confidence 3459999999999999987643
No 109
>smart00361 RRM_1 RNA recognition motif.
Probab=98.50 E-value=3.2e-07 Score=70.99 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=43.2
Q ss_pred HHHHHHHhc----cCCCCCCCeEEEE-EeecCCC--CCCceEEEEEecCHHHHHHHHHhC
Q 015686 350 DEEIYQLFC----GLNDLESSVEAVR-VIRHPHM--RVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 350 eedL~~~F~----~f~~~~G~I~~vr-I~~d~~~--g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
+++|+++|. .| |.|..|. |+.++.+ |.++|||||+|.+.++|..|++.|
T Consensus 2 ~~~l~~~~~~~~~~f----G~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l 57 (70)
T smart00361 2 DEDFEREFSEEEEYF----GEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDL 57 (70)
T ss_pred chhHHHHHHHHHHhc----CCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHh
Confidence 578888888 88 9999995 7777766 899999999999999999999865
No 110
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.49 E-value=1.4e-06 Score=86.30 Aligned_cols=153 Identities=12% Similarity=0.107 Sum_probs=117.5
Q ss_pred CcccEEEEeCCCCc-CcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 223 KLLRTIFVGNLPLK-VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 223 ~~~~tVfVgNLP~~-vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
...+.++|-+|... +.-+-|..+|-.||.|..|.+++.. -|.|.|++.+..+++.|+
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----------------------~gtamVemgd~~aver~v 342 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----------------------PGTAMVEMGDAYAVERAV 342 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----------------------cceeEEEcCcHHHHHHHH
Confidence 44688999999876 7889999999999999999986532 279999999999999999
Q ss_pred h-ccceEEcceeeccccCCCcc----------------------ccc------cCCCCCccCCcceeEecCCCCCCCHHH
Q 015686 302 A-FNMAVIGGNHIRLDRACPPR----------------------KKL------KGEDAPLYDIKKTVFVGNLPFDVKDEE 352 (402)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a~~~~----------------------k~~------~~~~~~~~~~~~tLfV~NLp~~~teed 352 (402)
. ||+.-+.|.+|.|+.+.... +.. .........++++|..-|.|..+|++.
T Consensus 343 ~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~ 422 (494)
T KOG1456|consen 343 THLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQ 422 (494)
T ss_pred HHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHH
Confidence 6 99999999999998765320 000 001123356789999999999999999
Q ss_pred HHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 353 IYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 353 L~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
|-.+|..... ...+|+|..-+ +- ...-|.++|.+..+|..||-+|
T Consensus 423 l~~i~nek~v---~~~svkvFp~k-se-rSssGllEfe~~s~Aveal~~~ 467 (494)
T KOG1456|consen 423 LIGICNEKDV---PPTSVKVFPLK-SE-RSSSGLLEFENKSDAVEALMKL 467 (494)
T ss_pred HHHHhhhcCC---CcceEEeeccc-cc-ccccceeeeehHHHHHHHHHHh
Confidence 9999987632 24566665543 22 2335799999999999998653
No 111
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.46 E-value=2.5e-07 Score=91.52 Aligned_cols=115 Identities=21% Similarity=0.291 Sum_probs=83.7
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhcc
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ln 304 (402)
..+||||+||.++++.+|+.+|.+||.|..+.++.+. .+. +.+||+||.|.+.+++.+++...
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~--~~~---------------~~rgFgfv~~~~e~sVdkv~~~~ 159 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDK--TTS---------------RPRGFGFVTFDSEDSVDKVTLQK 159 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecc--ccc---------------ccccceeeEeccccccceecccc
Confidence 5689999999999999999999999999888886543 222 25699999999999999999999
Q ss_pred ceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccC
Q 015686 305 MAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGL 360 (402)
Q Consensus 305 g~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f 360 (402)
-+.|+|+.+.|..|.++......... ........|+....+.-.|..+|..|
T Consensus 160 f~~~~gk~vevkrA~pk~~~~~~~~~----~~~~~~~~~~g~~~~~~~l~~~~~g~ 211 (311)
T KOG4205|consen 160 FHDFNGKKVEVKRAIPKEVMQSTKSS----VSTRGKGNNLGNGRTGFFLKKYFKGY 211 (311)
T ss_pred eeeecCceeeEeeccchhhccccccc----cccccccccccccccccccchhcccc
Confidence 99999999999999876544321110 01111122444444444555666666
No 112
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.46 E-value=3.8e-07 Score=83.96 Aligned_cols=80 Identities=16% Similarity=0.313 Sum_probs=66.5
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhc-CCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKF-GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~-G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
...+||+.||+.+.+..|..+|.+| |.|..+|+-+ ++ .+|.|+|||||+|.+.+.|..|-+
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsR--------nk---------rTGNSKgYAFVEFEs~eVA~IaAET 111 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSR--------NK---------RTGNSKGYAFVEFESEEVAKIAAET 111 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeec--------cc---------ccCCcCceEEEEeccHHHHHHHHHH
Confidence 4669999999999999999999998 6776666632 11 246688999999999999999886
Q ss_pred ccceEEcceeeccccCCCc
Q 015686 303 FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~ 321 (402)
||+++|.|+.|.|...-+.
T Consensus 112 MNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 112 MNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred hhhhhhhhheeeeEEeCch
Confidence 9999999999999876443
No 113
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=9.5e-08 Score=88.59 Aligned_cols=65 Identities=17% Similarity=0.285 Sum_probs=61.4
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
...++|||++|...+++.-|...|-+| |.|..|.++.|-.+++.||||||+|...++|.+||+-|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPF----GDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNM 72 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPF----GDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNM 72 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccc----cchhhcccccchhcccccceeEEEeeccchhHHHhhcC
Confidence 457999999999999999999999999 99999999999999999999999999999999999744
No 114
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.41 E-value=3.4e-06 Score=83.61 Aligned_cols=147 Identities=15% Similarity=0.166 Sum_probs=111.6
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
.+-.|.|++|-..+++.+|.+.++.||+|..+.++ | ..| .|.|+|.+.+.|..|+.
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~--P-----~~r----------------~alvefedi~~akn~Vnf 86 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCM--P-----HKR----------------QALVEFEDIEGAKNCVNF 86 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCCceEEEEec--c-----ccc----------------eeeeeeccccchhhheeh
Confidence 35679999999999999999999999999777652 1 122 79999999999999994
Q ss_pred --ccceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCC
Q 015686 303 --FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV 380 (402)
Q Consensus 303 --lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~ 380 (402)
-+...+.|+.-.+.++..+.-...+........-.-+-|-|--+.+|.+-|+.++..+ |.|.+|-|++. +|
T Consensus 87 aa~n~i~i~gq~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~----GkVlRIvIfkk--ng- 159 (494)
T KOG1456|consen 87 AADNQIYIAGQQALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQ----GKVLRIVIFKK--NG- 159 (494)
T ss_pred hccCcccccCchhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCC----CceEEEEEEec--cc-
Confidence 5666788888888887654333333222212222233455667789999999999998 99999977764 33
Q ss_pred CceEEEEEecCHHHHHHHHHhC
Q 015686 381 GKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 381 skG~aFV~F~s~e~A~~Al~~l 402 (402)
-.|.|+|.+.+.|++|..+|
T Consensus 160 --VQAmVEFdsv~~AqrAk~al 179 (494)
T KOG1456|consen 160 --VQAMVEFDSVEVAQRAKAAL 179 (494)
T ss_pred --eeeEEeechhHHHHHHHhhc
Confidence 36999999999999998765
No 115
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.40 E-value=3.5e-07 Score=87.05 Aligned_cols=84 Identities=24% Similarity=0.391 Sum_probs=71.8
Q ss_pred CCCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHH
Q 015686 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (402)
Q Consensus 221 e~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~A 300 (402)
+..+.|.|||-.||....+.+|..+|-.||.|.+.++..++.++ ++++||||.|.+..+++.|
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATN-----------------QSKCFGFVSfDNp~SaQaA 343 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATN-----------------QSKCFGFVSFDNPASAQAA 343 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccc-----------------cccceeeEecCCchhHHHH
Confidence 34457999999999999999999999999999999886554332 3668999999999999999
Q ss_pred Hh-ccceEEcceeeccccCCCc
Q 015686 301 LA-FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 301 l~-lng~~l~Gr~I~V~~a~~~ 321 (402)
|. |||..|.-++|.|..-.++
T Consensus 344 IqAMNGFQIGMKRLKVQLKRPk 365 (371)
T KOG0146|consen 344 IQAMNGFQIGMKRLKVQLKRPK 365 (371)
T ss_pred HHHhcchhhhhhhhhhhhcCcc
Confidence 95 9999999999999876543
No 116
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.38 E-value=3.3e-07 Score=91.11 Aligned_cols=156 Identities=20% Similarity=0.173 Sum_probs=115.2
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhcc
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ln 304 (402)
...|-|.||.+.++.++|+.+|.-+|.|..++|+-. +.+...+- ..-.|||.|.+...+..|--|.
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~-~~d~~~pv-------------~sRtcyVkf~d~~sv~vaQhLt 72 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPN-VDDSKIPV-------------ISRTCYVKFLDSQSVTVAQHLT 72 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCC-CCCccCcc-------------eeeeEEEeccCCcceeHHhhhc
Confidence 347999999999999999999999999999888431 22333322 3458999999999999998899
Q ss_pred ceEEcceeeccccCCCc-----------------------cccccCCC--------------CCcc----------CCcc
Q 015686 305 MAVIGGNHIRLDRACPP-----------------------RKKLKGED--------------APLY----------DIKK 337 (402)
Q Consensus 305 g~~l~Gr~I~V~~a~~~-----------------------~k~~~~~~--------------~~~~----------~~~~ 337 (402)
.+.|-++-|.|...... ...+.+.. .+.. ...+
T Consensus 73 ntvfvdraliv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirR 152 (479)
T KOG4676|consen 73 NTVFVDRALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRR 152 (479)
T ss_pred cceeeeeeEEEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHh
Confidence 99888888777654311 00000000 0111 1247
Q ss_pred eeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 338 tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
+|+|++|+..|...++..+|..+ |.|.+.++.- |-..-||-|.|........|+.++
T Consensus 153 t~~v~sl~~~~~l~e~~e~f~r~----Gev~ya~~as----k~~s~~c~~sf~~qts~~halr~~ 209 (479)
T KOG4676|consen 153 TREVQSLISAAILPESGESFERK----GEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALRSH 209 (479)
T ss_pred hhhhhcchhhhcchhhhhhhhhc----chhhhhhhhc----cCCCcchhhhHhhhhhHHHHHHhc
Confidence 89999999999999999999999 8998887744 334668889998888888887653
No 117
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.36 E-value=7.9e-07 Score=91.13 Aligned_cols=79 Identities=22% Similarity=0.317 Sum_probs=65.2
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
....+|||+|||++++..+|.++|..||.|...+|..... . +.+-+||||+|.+.++++.||.
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~----~-------------~~~~~fgFV~f~~~~~~~~~i~ 348 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSP----G-------------GKNPCFGFVEFENAAAVQNAIE 348 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEecc----C-------------CCcCceEEEEEeecchhhhhhh
Confidence 3456699999999999999999999999999988854220 0 1122699999999999999998
Q ss_pred ccceEEcceeeccccC
Q 015686 303 FNMAVIGGNHIRLDRA 318 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a 318 (402)
.+-..|+|++|.|..-
T Consensus 349 Asp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 349 ASPLEIGGRKLNVEEK 364 (419)
T ss_pred cCccccCCeeEEEEec
Confidence 8888899999999753
No 118
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.32 E-value=8.6e-07 Score=89.25 Aligned_cols=63 Identities=22% Similarity=0.312 Sum_probs=57.8
Q ss_pred cceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.+.+||.|||+++.+.+|+++|... .|+|++|.++.| .+|++||+|.|+|++++.+++|++.|
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrek---vGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~l 106 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREK---VGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKL 106 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHh---cCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHh
Confidence 4669999999999999999999765 399999999999 67999999999999999999999865
No 119
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.32 E-value=1e-06 Score=93.21 Aligned_cols=89 Identities=22% Similarity=0.391 Sum_probs=72.6
Q ss_pred CCCcCCCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechh
Q 015686 217 GFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQS 296 (402)
Q Consensus 217 ~~~~e~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~ 296 (402)
.+++.+.....|||+||++.++++.|...|..||+|.+|+|+.... ..-. .+.+-+|||-|.+..+
T Consensus 166 sfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRt-EeEk-------------~r~r~cgfvafmnR~D 231 (877)
T KOG0151|consen 166 SFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRT-EEEK-------------RRERNCGFVAFMNRAD 231 (877)
T ss_pred cCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccc-hhhh-------------ccccccceeeehhhhh
Confidence 3455555678899999999999999999999999999999865321 1111 1244689999999999
Q ss_pred HHHHHh-ccceEEcceeeccccCC
Q 015686 297 TEAALA-FNMAVIGGNHIRLDRAC 319 (402)
Q Consensus 297 A~~Al~-lng~~l~Gr~I~V~~a~ 319 (402)
|+.|++ |+|.++.++.+.+-++.
T Consensus 232 ~era~k~lqg~iv~~~e~K~gWgk 255 (877)
T KOG0151|consen 232 AERALKELQGIIVMEYEMKLGWGK 255 (877)
T ss_pred HHHHHHHhcceeeeeeeeeecccc
Confidence 999996 99999999999998873
No 120
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.27 E-value=2e-06 Score=79.25 Aligned_cols=67 Identities=22% Similarity=0.379 Sum_probs=60.1
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
......++|+.+|.-+.+.+|..+|.+|+ |.|..+|+-|+..||.++|||||+|.+.+.|.-|-+.|
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~---g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETM 112 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFG---GTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETM 112 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcC---CeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHh
Confidence 44567899999999999999999999984 88999999999999999999999999999998887654
No 121
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.24 E-value=1.1e-06 Score=79.69 Aligned_cols=59 Identities=24% Similarity=0.363 Sum_probs=51.7
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHH
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~ 400 (402)
..++|||+|||..+.+.+|.++|.+| |.|..|.|-.-+ ..-+||||+|.++.+|..||.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKy----g~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiy 63 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKY----GRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIY 63 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhh----cceEEEEeccCC---CCCCeeEEEecCccchhhhhh
Confidence 46899999999999999999999999 999999875432 257899999999999999885
No 122
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.17 E-value=3.3e-06 Score=80.07 Aligned_cols=152 Identities=18% Similarity=0.182 Sum_probs=104.4
Q ss_pred cEEEEeCCCCcCcHHH-H--HHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 226 RTIFVGNLPLKVKKKT-L--IKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 226 ~tVfVgNLP~~vtee~-L--~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
-..|++|+-.++..+- | ...|+.|-.+....+.+. . .+.-++++|+.|........+-.
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~----~--------------p~~~~~~~~~~~k~s~a~~k~~~ 158 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRD----R--------------PQPIRPEAFESFKASDALLKAET 158 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhc----C--------------CCccCcccccCcchhhhhhhhcc
Confidence 4467777766665554 3 455665554433333211 1 12235799999987776666653
Q ss_pred -ccceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCC
Q 015686 303 -FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~s 381 (402)
-++..+.-+.|++.....-.... .........+||.+.|.-.++.+.|-..|.+| -.....++++|..+|++
T Consensus 159 ~~~~Kki~~~~VR~a~gtswedPs---l~ew~~~DfRIfcgdlgNevnd~vl~raf~Kf----psf~~akviRdkRTgKS 231 (290)
T KOG0226|consen 159 EKEKKKIGKPPVRLAAGTSWEDPS---LAEWDEDDFRIFCGDLGNEVNDDVLARAFKKF----PSFQKAKVIRDKRTGKS 231 (290)
T ss_pred ccccccccCcceeeccccccCCcc---cccCccccceeecccccccccHHHHHHHHHhc----cchhhcccccccccccc
Confidence 55666666655554443221111 12234456889999999999999999999999 56777899999999999
Q ss_pred ceEEEEEecCHHHHHHHHHhC
Q 015686 382 KGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 382 kG~aFV~F~s~e~A~~Al~~l 402 (402)
+|||||.|.+..++..|+.-|
T Consensus 232 kgygfVSf~~pad~~rAmrem 252 (290)
T KOG0226|consen 232 KGYGFVSFRDPADYVRAMREM 252 (290)
T ss_pred ccceeeeecCHHHHHHHHHhh
Confidence 999999999999999998643
No 123
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.12 E-value=2.3e-06 Score=81.53 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=67.4
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhcc
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ln 304 (402)
...|||||+.+.+|.+++..+|+.||.|..+.|..+.. .+. .+|||||+|.+.+.++.++.||
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~--~~~---------------~k~~~yvef~~~~~~~~ay~l~ 163 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKF--RGH---------------PKGFAYVEFSSYELVEEAYKLD 163 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeecccc--CCC---------------cceeEEEecccHhhhHHHhhcC
Confidence 57799999999999999999999999998888754332 112 4589999999999999999999
Q ss_pred ceEEcceeeccccCC
Q 015686 305 MAVIGGNHIRLDRAC 319 (402)
Q Consensus 305 g~~l~Gr~I~V~~a~ 319 (402)
|..|.|+.|.|.+..
T Consensus 164 gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 164 GSEIPGPAIEVTLKR 178 (231)
T ss_pred Ccccccccceeeeee
Confidence 999999999988764
No 124
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.10 E-value=5.2e-06 Score=79.40 Aligned_cols=79 Identities=23% Similarity=0.382 Sum_probs=65.9
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
..+|+|.|||+.|+..+|+++|..||.+..+-+... .. +.+.|.|-|.|...++|..|++ +
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~---~~---------------G~s~Gta~v~~~r~~DA~~avk~~ 144 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD---RA---------------GRSLGTADVSFNRRDDAERAVKKY 144 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccC---CC---------------CCCCccceeeecchHhHHHHHHHh
Confidence 478999999999999999999999997766655221 11 3466999999999999999996 9
Q ss_pred cceEEcceeeccccCCCc
Q 015686 304 NMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~ 321 (402)
||..++|+.|.+.....+
T Consensus 145 ~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 145 NGVALDGRPMKIEIISSP 162 (243)
T ss_pred cCcccCCceeeeEEecCc
Confidence 999999999988876544
No 125
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=8.2e-06 Score=84.59 Aligned_cols=74 Identities=28% Similarity=0.378 Sum_probs=63.5
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
....++|+|-|||..|+.++|+.+|+.||.|..|+... ..+|.+||+|.+...|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~----------------------~~~~~~~v~FyDvR~A~~Al 129 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP----------------------NKRGIVFVEFYDVRDAERAL 129 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc----------------------ccCceEEEEEeehHhHHHHH
Confidence 34579999999999999999999999999998866521 13489999999999999999
Q ss_pred h-ccceEEcceeecccc
Q 015686 302 A-FNMAVIGGNHIRLDR 317 (402)
Q Consensus 302 ~-lng~~l~Gr~I~V~~ 317 (402)
+ ||+..|.|+.|....
T Consensus 130 k~l~~~~~~~~~~k~~~ 146 (549)
T KOG4660|consen 130 KALNRREIAGKRIKRPG 146 (549)
T ss_pred HHHHHHHhhhhhhcCCC
Confidence 5 999999999888433
No 126
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=5.3e-06 Score=81.78 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=60.7
Q ss_pred ccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHH
Q 015686 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLR 399 (402)
Q Consensus 332 ~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al 399 (402)
..+|.+.|||--|.+-++.+||.-+|+.| |.|.+|.|++|..+|-+-.||||+|.+.++|..|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrF----G~i~sceVIRD~ktgdsLqyaFiEFen~escE~Ay 298 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRF----GKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAY 298 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhc----ccceeeeEEecccccchhheeeeeecchhhHHHHH
Confidence 35678999999999999999999999999 99999999999999999999999999999999985
No 127
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.00 E-value=2.4e-05 Score=64.78 Aligned_cols=62 Identities=16% Similarity=0.172 Sum_probs=55.0
Q ss_pred ceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHH
Q 015686 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~ 400 (402)
+||.|+|||...+.++|.+++.... .|...-+-++.|..++-+.|||||-|.+++.|..-.+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~--~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~ 63 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHF--KGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYK 63 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhc--cCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHH
Confidence 6899999999999999999996543 2888899999999999999999999999999987654
No 128
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.99 E-value=1.5e-05 Score=74.45 Aligned_cols=61 Identities=20% Similarity=0.324 Sum_probs=54.2
Q ss_pred CcceeEecCCCCCCCHHHHHH----HhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQ----LFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~----~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
+..||||.||+..+..++|+. +|+.| |.|..|...+. .+.||-|||.|.+.+.|-.|+++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqf----G~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l 72 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQF----GKILDISAFKT---PKMRGQAFVVFKETEAASAALRAL 72 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhh----CCeEEEEecCC---CCccCceEEEecChhHHHHHHHHh
Confidence 445999999999999999988 99999 99999977654 568999999999999999999875
No 129
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.85 E-value=1.9e-05 Score=84.59 Aligned_cols=59 Identities=19% Similarity=0.364 Sum_probs=53.8
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..++|||||+|+.++++.||.++|+.| |.|.+|.++- ++|+|||.+....+|.+||..|
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feef----GeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl 477 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEF----GEIQSIILIP------PRGCAFIKMVRRQDAEKALQKL 477 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhc----ccceeEeecc------CCceeEEEEeehhHHHHHHHHH
Confidence 357999999999999999999999999 9999997753 6999999999999999998764
No 130
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=97.82 E-value=3.6e-05 Score=56.46 Aligned_cols=41 Identities=20% Similarity=0.434 Sum_probs=34.9
Q ss_pred HHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 353 IYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 353 L~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
|+.+|++| |.|..|.+.... +|+|||+|.+.++|..|+..|
T Consensus 1 L~~~f~~f----G~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l 41 (56)
T PF13893_consen 1 LYKLFSKF----GEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQL 41 (56)
T ss_dssp HHHHHTTT----S-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHH
T ss_pred ChHHhCCc----ccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHh
Confidence 68899999 999999887652 689999999999999999753
No 131
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.75 E-value=4.4e-05 Score=75.30 Aligned_cols=59 Identities=25% Similarity=0.414 Sum_probs=52.4
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
.....+|||+||...+++.+|+++|.+| |.|.+|+++.. +|.|||+|.+..+|..|...
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqy----Geirsi~~~~~------~~CAFv~ftTR~aAE~Aae~ 283 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQY----GEIRSIRILPR------KGCAFVTFTTREAAEKAAEK 283 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhc----CCeeeEEeecc------cccceeeehhhHHHHHHHHh
Confidence 3456899999998899999999999999 99999998764 67999999999999988753
No 132
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.68 E-value=4.7e-05 Score=78.28 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=52.7
Q ss_pred cceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+|||+|||++++..+|.++|..| |.|...+|..-.-.+...+||||+|.+...+..||.+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~F----G~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A 349 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQF----GPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA 349 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhc----ccccccceEEeccCCCcCceEEEEEeecchhhhhhhc
Confidence 4559999999999999999999999 9999988866432244449999999999999999875
No 133
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.65 E-value=5.4e-06 Score=89.44 Aligned_cols=155 Identities=18% Similarity=0.123 Sum_probs=118.6
Q ss_pred ccEEEEeCCCCcCcHH-HHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcc-eEEEEEeechhHHHHHh
Q 015686 225 LRTIFVGNLPLKVKKK-TLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSV-HAYIVFKSEQSTEAALA 302 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee-~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG-~aFV~F~s~e~A~~Al~ 302 (402)
.+..++.|+-+..... ..+..|..+|.|..|++..- +.. +..+ ++++.+....+++.|..
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~-----g~k-------------~h~q~~~~~~~s~~~~~esat~ 632 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKR-----GFK-------------AHEQPQQQKVQSKHGSAESATV 632 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccc-----ccc-------------ccccchhhhhhccccchhhccc
Confidence 3457788887777666 56778999999998887221 111 0122 78999999999999999
Q ss_pred ccceEEcceeeccccCCCccccccCCC-CCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCC
Q 015686 303 FNMAVIGGNHIRLDRACPPRKKLKGED-APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~~~~~-~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~s 381 (402)
..+..+.++.+.|..+.+..+.....- ........++||+||+..+.+.+|...|..+ |.+..++|......+..
T Consensus 633 pa~~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~----~~~e~vqi~~h~n~~~~ 708 (881)
T KOG0128|consen 633 PAGGALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPS----GTIEVVQIVIHKNEKRF 708 (881)
T ss_pred ccccccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCcc----chhhhHHHHHHhhcccc
Confidence 999999999999988876543221110 1111234689999999999999999999999 78888877766677899
Q ss_pred ceEEEEEecCHHHHHHHHHh
Q 015686 382 KGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 382 kG~aFV~F~s~e~A~~Al~~ 401 (402)
+|+|||.|..++++.+||.+
T Consensus 709 rG~~Y~~F~~~~~~~aaV~f 728 (881)
T KOG0128|consen 709 RGKAYVEFLKPEHAGAAVAF 728 (881)
T ss_pred ccceeeEeecCCchhhhhhh
Confidence 99999999999999999864
No 134
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.63 E-value=0.00014 Score=68.02 Aligned_cols=64 Identities=28% Similarity=0.373 Sum_probs=49.9
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEE-eecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRV-IRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI-~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.-+||||.+||.++..-+|+.+|..|. | -+.+.| +.+......+-+|||+|.++..|..|+++|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~---G-YEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaL 97 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFH---G-YEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNAL 97 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCC---C-ccceeeeeccCCCccccceEEEEecchHHHHHHHHHh
Confidence 368999999999999999999999984 3 222222 233333345679999999999999999886
No 135
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.63 E-value=6.1e-05 Score=71.86 Aligned_cols=64 Identities=25% Similarity=0.225 Sum_probs=59.5
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
.....+||+|+.+.++.+++...|+.| |.|..|.|+.|...|.++||+||+|.+.+.+..||.|
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~C----g~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l 162 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESC----GGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKL 162 (231)
T ss_pred cCCceEEEeccccccccchhhheeecc----CCccceeeeccccCCCcceeEEEecccHhhhHHHhhc
Confidence 356789999999999999999999999 9999999999998889999999999999999999874
No 136
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.62 E-value=8.3e-06 Score=82.03 Aligned_cols=132 Identities=15% Similarity=0.206 Sum_probs=100.4
Q ss_pred EEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-ccc
Q 015686 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNM 305 (402)
Q Consensus 227 tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-lng 305 (402)
.+||+||.+.++..+|..+|...-.-.+-.++. -.||+||.+.+...|.+|++ ++|
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~-----------------------k~gyafvd~pdq~wa~kaie~~sg 59 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----------------------KSGYAFVDCPDQQWANKAIETLSG 59 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee-----------------------ecceeeccCCchhhhhhhHHhhch
Confidence 489999999999999999998542111111111 23899999999999999996 888
Q ss_pred e-EEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEE-eecCCCCCCce
Q 015686 306 A-VIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRV-IRHPHMRVGKG 383 (402)
Q Consensus 306 ~-~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI-~~d~~~g~skG 383 (402)
. .+.|.++.|..+.++.. .++.+.|+|+|+...++-|..|+..| |.|..|.. ..++.+ -
T Consensus 60 k~elqGkr~e~~~sv~kkq-----------rsrk~Qirnippql~wevld~Ll~qy----g~ve~~eqvnt~~et----a 120 (584)
T KOG2193|consen 60 KVELQGKRQEVEHSVPKKQ-----------RSRKIQIRNIPPQLQWEVLDSLLAQY----GTVENCEQVNTDSET----A 120 (584)
T ss_pred hhhhcCceeeccchhhHHH-----------HhhhhhHhcCCHHHHHHHHHHHHhcc----CCHhHhhhhccchHH----H
Confidence 7 68999999988865432 24679999999999999999999999 89988854 334332 1
Q ss_pred EEEEEecCHHHHHHHHH
Q 015686 384 IAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 384 ~aFV~F~s~e~A~~Al~ 400 (402)
..-|+|.+.+.+..||.
T Consensus 121 vvnvty~~~~~~~~ai~ 137 (584)
T KOG2193|consen 121 VVNVTYSAQQQHRQAIH 137 (584)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 23467777777777775
No 137
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.58 E-value=0.00012 Score=70.07 Aligned_cols=61 Identities=26% Similarity=0.280 Sum_probs=56.7
Q ss_pred cceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+|+|.|||+.++..||+++|..| |.+..+-|.+++ .|.+.|.|-|.|...++|.+|++-
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~----~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~ 143 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEF----GELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKK 143 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHh----ccceEEeeccCC-CCCCCccceeeecchHhHHHHHHH
Confidence 4789999999999999999999999 899999999995 599999999999999999999864
No 138
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.57 E-value=9.2e-05 Score=78.56 Aligned_cols=153 Identities=13% Similarity=0.057 Sum_probs=107.2
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhcc
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ln 304 (402)
.+.|-+.++++.....++++||-..- |.++.|... ....+ ..|.++|.|.....++.|+.-|
T Consensus 311 ~~y~~~~gm~fn~~~nd~rkfF~g~~-~~~~~l~~~---~v~~~--------------~tG~~~v~f~~~~~~q~A~~rn 372 (944)
T KOG4307|consen 311 KYYNNYKGMEFNNDFNDGRKFFPGRN-AQSTDLSEN---RVAPP--------------QTGRKTVMFTPQAPFQNAFTRN 372 (944)
T ss_pred hheeeecccccccccchhhhhcCccc-ccccchhhh---hcCCC--------------cCCceEEEecCcchHHHHHhcC
Confidence 46677889999999999999997432 333333111 11122 2489999999999999999988
Q ss_pred ceEEcceeeccccCCCccccc-----------------------------cCCC-CCccCCcceeEecCCCCCCCHHHHH
Q 015686 305 MAVIGGNHIRLDRACPPRKKL-----------------------------KGED-APLYDIKKTVFVGNLPFDVKDEEIY 354 (402)
Q Consensus 305 g~~l~Gr~I~V~~a~~~~k~~-----------------------------~~~~-~~~~~~~~tLfV~NLp~~~teedL~ 354 (402)
...+-.|.|.+..+....... .++. ........+|||..||+.++..++.
T Consensus 373 ~~~~~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v 452 (944)
T KOG4307|consen 373 PSDDVNRPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPV 452 (944)
T ss_pred chhhhhcceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchh
Confidence 888888888876543210000 0000 0012235799999999999999999
Q ss_pred HHhccCCCCCCCeEE-EEEeecCCCCCCceEEEEEecCHHHHHHHHH
Q 015686 355 QLFCGLNDLESSVEA-VRVIRHPHMRVGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 355 ~~F~~f~~~~G~I~~-vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~ 400 (402)
++|... -.|+. |.|.+-+ +++.++.|||.|..+.++..|+-
T Consensus 453 ~~f~~~----~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~ 494 (944)
T KOG4307|consen 453 NKFMGA----AAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASS 494 (944)
T ss_pred hhhhhh----hhhhheeEeccCC-cccccchhhheeccccccchhhh
Confidence 999876 35555 6665554 57889999999999887776653
No 139
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.57 E-value=0.00011 Score=76.35 Aligned_cols=64 Identities=13% Similarity=0.211 Sum_probs=58.5
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.|||.+|...+...+|+.||++| |.|....|+.+..+.-.++||||++.+..+|.+||+-|
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKy----GKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hL 467 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKY----GKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHL 467 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHh----cceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHh
Confidence 36899999999999999999999999 99999999998777778999999999999999999754
No 140
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.52 E-value=0.00024 Score=58.77 Aligned_cols=79 Identities=19% Similarity=0.178 Sum_probs=55.1
Q ss_pred cEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-cc
Q 015686 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FN 304 (402)
Q Consensus 226 ~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-ln 304 (402)
.||.|+|||-..|.+.|.+++..... ....+.-.|+.- ..+.+.|||||-|.+++.|..-.. ++
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~-g~yDF~YLPiDf--------------~~~~N~GYAFVNf~~~~~~~~F~~~f~ 66 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFK-GKYDFFYLPIDF--------------KNKCNLGYAFVNFTSPQAAIRFYKAFN 66 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhcc-CcceEEEeeeec--------------cCCCceEEEEEEcCCHHHHHHHHHHHc
Confidence 68999999999999999998875321 123443334322 123377999999999999998875 88
Q ss_pred ceEEcc----eeeccccCC
Q 015686 305 MAVIGG----NHIRLDRAC 319 (402)
Q Consensus 305 g~~l~G----r~I~V~~a~ 319 (402)
|..+.. +...|.+|.
T Consensus 67 g~~w~~~~s~Kvc~i~yAr 85 (97)
T PF04059_consen 67 GKKWPNFNSKKVCEISYAR 85 (97)
T ss_pred CCccccCCCCcEEEEehhH
Confidence 887743 334444443
No 141
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.49 E-value=0.00016 Score=58.02 Aligned_cols=67 Identities=21% Similarity=0.239 Sum_probs=45.3
Q ss_pred cEEEEeCCCCcCcHHHHH----HHhhhcC-CeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHH
Q 015686 226 RTIFVGNLPLKVKKKTLI----KEFIKFG-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (402)
Q Consensus 226 ~tVfVgNLP~~vtee~L~----~~F~~~G-~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~A 300 (402)
..|||.|||.+.+...|+ .++..|| .|.+| +.|.|+|.|.+.+.|..|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---------------------------~~~tAilrF~~~~~A~RA 55 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---------------------------SGGTAILRFPNQEFAERA 55 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------------------------TT-EEEEESSHHHHHHH
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---------------------------eCCEEEEEeCCHHHHHHH
Confidence 358999999999877655 5555787 55333 126899999999999999
Q ss_pred Hh-ccceEEcceeeccccCC
Q 015686 301 LA-FNMAVIGGNHIRLDRAC 319 (402)
Q Consensus 301 l~-lng~~l~Gr~I~V~~a~ 319 (402)
++ |+|-.+.|++|.|.+..
T Consensus 56 ~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 56 QKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp HHHHTT--SSSS--EEESS-
T ss_pred HHhhcccccccceEEEEEcC
Confidence 96 99999999999999874
No 142
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.46 E-value=0.00014 Score=69.17 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=64.5
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
...||+|.|.-+++.+.|...|.+|-.....+++++. .+++++||+||.|.+..++..|+. |
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdk-----------------RTgKSkgygfVSf~~pad~~rAmrem 252 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDK-----------------RTGKSKGYGFVSFRDPADYVRAMREM 252 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccc-----------------cccccccceeeeecCHHHHHHHHHhh
Confidence 4679999999999999999999999765555553321 235688999999999999999995 9
Q ss_pred cceEEcceeeccccCC
Q 015686 304 NMAVIGGNHIRLDRAC 319 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~ 319 (402)
||..++.|.|.+..+.
T Consensus 253 ~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 253 NGKYVGSRPIKLRKSE 268 (290)
T ss_pred cccccccchhHhhhhh
Confidence 9999999999886653
No 143
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.31 E-value=0.00021 Score=74.45 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=53.9
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|+|-|||..++.++|+.+|..| |.|..|+--+. .+|.+||+|-+..+|.+|+++|
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~y----Geir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l 132 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAY----GEIREIRETPN-----KRGIVFVEFYDVRDAERALKAL 132 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhh----cchhhhhcccc-----cCceEEEEEeehHhHHHHHHHH
Confidence 3467899999999999999999999999 99998765443 6899999999999999999875
No 144
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.23 E-value=0.00019 Score=66.98 Aligned_cols=63 Identities=24% Similarity=0.349 Sum_probs=56.1
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
+..+||||+||-..++++-|.++|-.. |.|..|.|+.+.+ +..+ ||||.|.+.....-|++||
T Consensus 7 e~drtl~v~n~~~~v~eelL~Elfiqa----GPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ 69 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQA----GPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLE 69 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhcc----CceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhc
Confidence 346899999999999999999999998 9999998888755 5556 9999999999999999876
No 145
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.23 E-value=0.00053 Score=57.59 Aligned_cols=55 Identities=22% Similarity=0.150 Sum_probs=36.7
Q ss_pred ceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..|+|.+++..++.++|+.+|..| |.|.+|.+.+. ...|||.|.+.+.|..|+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~----g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~ 56 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQF----GEVAYVDFSRG------DTEGYVRFKTPEAAQKALEK 56 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS------EEEEE--TT-------SEEEEEESS---HHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhc----CCcceEEecCC------CCEEEEEECCcchHHHHHHH
Confidence 468999999999999999999999 89999988764 33789999999999999875
No 146
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.17 E-value=0.00046 Score=69.93 Aligned_cols=82 Identities=28% Similarity=0.291 Sum_probs=64.4
Q ss_pred CCCCcCCCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeee---cccCCCCCccchhhhhhcccCCCcceEEEEEe
Q 015686 216 EGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSV---PIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (402)
Q Consensus 216 ~~~~~e~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~---~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~ 292 (402)
..++.+...++||.+-|||.+-.-+.|.++|+.||.|.+|||+.. +....+.+++... -..+-+|+|+|.
T Consensus 222 p~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~-------~~tk~~AlvEye 294 (484)
T KOG1855|consen 222 PEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFE-------LQTKECALVEYE 294 (484)
T ss_pred CCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchh-------hhhhhhhhhhhh
Confidence 455666678999999999999999999999999999999999775 4444444443222 123558999999
Q ss_pred echhHHHHHhcc
Q 015686 293 SEQSTEAALAFN 304 (402)
Q Consensus 293 s~e~A~~Al~ln 304 (402)
..+.|.+|.++.
T Consensus 295 ~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 295 EVEAARKARELL 306 (484)
T ss_pred hhHHHHHHHHhh
Confidence 999999999744
No 147
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.16 E-value=0.00027 Score=69.57 Aligned_cols=80 Identities=33% Similarity=0.515 Sum_probs=66.2
Q ss_pred ccEEE-EeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhc
Q 015686 225 LRTIF-VGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (402)
Q Consensus 225 ~~tVf-VgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~l 303 (402)
..++| |+||++.++.++|+.+|..||.|..++++..+ . ++.++|||||+|.+......++..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~--~---------------s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDE--E---------------SGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCC--C---------------ccchhhhhhhhhhhchhHHHHhhc
Confidence 45666 99999999999999999999999999885422 2 234679999999999999998866
Q ss_pred cceEEcceeeccccCCCc
Q 015686 304 NMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~ 321 (402)
+...+.|+.+.+....+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 247 QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred ccCcccCcccccccCCCC
Confidence 677899999999887654
No 148
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.12 E-value=0.00055 Score=67.48 Aligned_cols=116 Identities=14% Similarity=0.268 Sum_probs=74.3
Q ss_pred cEEEEeCCCCcCcHHH----H--HHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcce--EEEEEeechhH
Q 015686 226 RTIFVGNLPLKVKKKT----L--IKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH--AYIVFKSEQST 297 (402)
Q Consensus 226 ~tVfVgNLP~~vtee~----L--~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~--aFV~F~s~e~A 297 (402)
.-|||-+||+.+-.++ | .++|.+||.|..|.+-+. + + ..+. ..|. .||.|.+.++|
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkk----t--~--------s~ns--t~~h~gvYITy~~kedA 178 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKK----T--S--------SLNS--TASHAGVYITYSTKEDA 178 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEeccc----c--c--------cccc--ccccceEEEEecchHHH
Confidence 3489999999987666 2 378999999988877221 1 1 0111 1123 39999999999
Q ss_pred HHHHh-ccceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCC---CCCHHHHHHHhc
Q 015686 298 EAALA-FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPF---DVKDEEIYQLFC 358 (402)
Q Consensus 298 ~~Al~-lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~---~~teedL~~~F~ 358 (402)
..||+ .+|..++||.|+..+...+-=.... .....+...+.|++--.. .++.++|...-.
T Consensus 179 arcIa~vDgs~~DGr~lkatYGTTKYCtsYL-Rn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~qh 242 (480)
T COG5175 179 ARCIAEVDGSLLDGRVLKATYGTTKYCTSYL-RNAVCPNPDCMYLHEPGPEKDSLTKDELCNSQH 242 (480)
T ss_pred HHHHHHhccccccCceEeeecCchHHHHHHH-cCCCCCCCCeeeecCCCcccccccHHHHhhhhh
Confidence 99995 9999999999998876532100000 011233445666654432 356777765543
No 149
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.97 E-value=0.0017 Score=64.40 Aligned_cols=62 Identities=21% Similarity=0.323 Sum_probs=55.0
Q ss_pred cceeEecCCCCCCCHHHHHHHhccCCCCCCCeE--------EEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE--------AVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~--------~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
...|||.|||..+|.+++.++|..| |.|. .|.|.++ ..|..+|=|.+.|--.++...||++|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKc----GiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~il 203 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKC----GIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKIL 203 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhc----ceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHh
Confidence 4569999999999999999999999 6663 4778888 55999999999999999999999986
No 150
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.88 E-value=0.00049 Score=64.77 Aligned_cols=71 Identities=23% Similarity=0.372 Sum_probs=61.1
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..+.++|.||+..+...+|..+|..+|.+....+ ..+++||+|...+++..|+.
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------------------------~~~~~~v~Fs~~~da~ra~~~ 152 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------------------------RRNFAFVEFSEQEDAKRALEK 152 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------------------------hccccceeehhhhhhhhcchh
Confidence 3678999999999999999999999998854433 12699999999999999996
Q ss_pred ccceEEcceeeccccCC
Q 015686 303 FNMAVIGGNHIRLDRAC 319 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~ 319 (402)
+++..+.|+.|.+....
T Consensus 153 l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 153 LDGKKLNGRRISVEKNS 169 (216)
T ss_pred ccchhhcCceeeecccC
Confidence 99999999999995443
No 151
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.79 E-value=0.0025 Score=53.56 Aligned_cols=54 Identities=20% Similarity=0.394 Sum_probs=34.9
Q ss_pred cEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 226 ~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
+.|+|.+++..++-++|+.+|+.||.|..|.+.. ..-.|||.|.+.++|+.|+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~-----------------------G~~~g~VRf~~~~~A~~a~~ 55 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR-----------------------GDTEGYVRFKTPEAAQKALE 55 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T-----------------------T-SEEEEEESS---HHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC-----------------------CCCEEEEEECCcchHHHHHH
Confidence 5689999999999999999999999988887721 11379999999999999994
No 152
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.77 E-value=0.0012 Score=65.76 Aligned_cols=89 Identities=22% Similarity=0.238 Sum_probs=68.9
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
...+|||-+||..+++.+|..+|.+||.|..-+ .+.+|+.- |-....+.+.+|-|.|.|.+...|+.|+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK-------~t~kPki~--~y~dkeT~~~KGeatvS~~D~~~akaai~~ 135 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNK-------RTGKPKIK--IYTDKETGAPKGEATVSYEDPPAAKAAIEW 135 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCC-------CCCCcchh--ccccccccCcCCceeeeecChhhhhhhhhh
Confidence 357899999999999999999999999764221 12222211 11223667788999999999999999997
Q ss_pred ccceEEcceeeccccCCCc
Q 015686 303 FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~ 321 (402)
+++..|.|..|.|..+...
T Consensus 136 ~agkdf~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 136 FAGKDFCGNTIKVSLAERR 154 (351)
T ss_pred hccccccCCCchhhhhhhc
Confidence 9999999999999887543
No 153
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=96.67 E-value=0.0024 Score=68.30 Aligned_cols=65 Identities=17% Similarity=0.250 Sum_probs=56.3
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCC---CCCCceEEEEEecCHHHHHHHHHhC
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPH---MRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~---~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
+..+.|||+||++.++++.|...|..| |.|.+|+|+.-+. ..+.+.+|||.|.+..+|.+|++-|
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrf----gPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~l 239 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRF----GPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKEL 239 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhccc----CcccceeeecccchhhhccccccceeeehhhhhHHHHHHHh
Confidence 446889999999999999999999999 8999999887532 3456789999999999999999754
No 154
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.63 E-value=0.0078 Score=50.14 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=51.0
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhcc
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ln 304 (402)
.+.|.|=+.|+. ....|..+|++||.|....-. ......- ..........+-.|.|.+..+|++||..|
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~---~~~~~~~-------~~~~~~~~~NWi~I~Y~~~~~A~rAL~~N 74 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEV---LRSSSGI-------NPYPIPSGGNWIHITYDNPLSAQRALQKN 74 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGG---G-----------------E-CCTTEEEEEESSHHHHHHHHTTT
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecc---ccccccc-------ccccCCCCCCEEEEECCCHHHHHHHHHhC
Confidence 466888899988 557788999999998665300 0000000 00001123469999999999999999999
Q ss_pred ceEEcceee-ccccC
Q 015686 305 MAVIGGNHI-RLDRA 318 (402)
Q Consensus 305 g~~l~Gr~I-~V~~a 318 (402)
|..|.|..| -|.++
T Consensus 75 G~i~~g~~mvGV~~~ 89 (100)
T PF05172_consen 75 GTIFSGSLMVGVKPC 89 (100)
T ss_dssp TEEETTCEEEEEEE-
T ss_pred CeEEcCcEEEEEEEc
Confidence 999988654 45444
No 155
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.54 E-value=0.0056 Score=49.24 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=36.0
Q ss_pred ceeEecCCCCCCCHHH----HHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 337 KTVFVGNLPFDVKDEE----IYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 337 ~tLfV~NLp~~~teed----L~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..|+|.|||...+... |++++..|| |.|..| +.|.|+|.|.+++.|.+|++-
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCG---GkVl~v----------~~~tAilrF~~~~~A~RA~KR 58 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCG---GKVLSV----------SGGTAILRFPNQEFAERAQKR 58 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT-----EEE------------TT-EEEEESSHHHHHHHHHH
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccC---CEEEEE----------eCCEEEEEeCCHHHHHHHHHh
Confidence 4699999999988654 567778885 788766 246899999999999999864
No 156
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.54 E-value=0.0061 Score=44.76 Aligned_cols=52 Identities=27% Similarity=0.496 Sum_probs=41.3
Q ss_pred cEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 226 ~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
+.|-|.+.|.+.. +.|..+|..||.|..+.+.. ..-+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~-----------------------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE-----------------------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC-----------------------CCcEEEEEECCHHHHHhhC
Confidence 5688999998776 45556999999999887720 1238999999999999986
No 157
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.40 E-value=0.0056 Score=65.45 Aligned_cols=75 Identities=20% Similarity=0.338 Sum_probs=60.5
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeE-EEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDS-VRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~-vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
.+.|-|.|+|++++-++|.+||..|-.+-. |+++ ..+.+.+ .|-|.|-|.+.+.|..|..
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r---~nd~G~p---------------TGe~mvAfes~~eAr~A~~d 928 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIR---RNDDGVP---------------TGECMVAFESQEEARRASMD 928 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEe---ecCCCCc---------------ccceeEeecCHHHHHhhhhc
Confidence 347899999999999999999999976543 4442 2334444 4899999999999999985
Q ss_pred ccceEEcceeecccc
Q 015686 303 FNMAVIGGNHIRLDR 317 (402)
Q Consensus 303 lng~~l~Gr~I~V~~ 317 (402)
|++..|..|.|.|.+
T Consensus 929 l~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 929 LDGQKIRNRVVSLRI 943 (944)
T ss_pred cccCcccceeEEEEe
Confidence 999999999888754
No 158
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.30 E-value=0.0038 Score=59.65 Aligned_cols=83 Identities=22% Similarity=0.319 Sum_probs=57.4
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
...||+++||+.+...-|+++|+.||.|-.|-|. |-..+.. ..-..+..++...---|+|+|.+...|..+.. |
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylq--pE~~s~~---~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~L 148 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQ--PEDDSKR---AARKRKGGNYKKLYSEGWVEFISKRVAKRIAELL 148 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEec--chhhHHH---HHHhhcCCCccccchhHHHHHHHHHHHHHHHHHh
Confidence 4679999999999999999999999999877663 2222200 00000011112222357899999999988775 9
Q ss_pred cceEEccee
Q 015686 304 NMAVIGGNH 312 (402)
Q Consensus 304 ng~~l~Gr~ 312 (402)
|+..|.|+.
T Consensus 149 nn~~Iggkk 157 (278)
T KOG3152|consen 149 NNTPIGGKK 157 (278)
T ss_pred CCCccCCCC
Confidence 999998865
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.08 E-value=0.012 Score=43.11 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=41.9
Q ss_pred ceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHH
Q 015686 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLR 399 (402)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al 399 (402)
+.|-|.+.+.... +.|..+|..| |.|..+.+.. ..-+.||.|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~f----GeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASF----GEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhc----CCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 5688888887654 5566688889 9999998862 2448999999999999986
No 160
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.04 E-value=0.017 Score=60.12 Aligned_cols=76 Identities=25% Similarity=0.373 Sum_probs=57.6
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhh-hcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFI-KFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~-~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
..+|||||+||.-++.++|..+|. -||.|..+-|=+++ .-+-| +|-|=|.|.+..+-.+||.
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~--k~KYP---------------kGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDP--KLKYP---------------KGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCc--ccCCC---------------CCcceeeecccHHHHHHHh
Confidence 479999999999999999999999 79999888873322 22333 4889999999999999994
Q ss_pred -----ccceEEcceeecccc
Q 015686 303 -----FNMAVIGGNHIRLDR 317 (402)
Q Consensus 303 -----lng~~l~Gr~I~V~~ 317 (402)
++...|.. +|.|+.
T Consensus 432 arFvql~h~d~~K-RVEIkP 450 (520)
T KOG0129|consen 432 ARFVQLDHTDIDK-RVEIKP 450 (520)
T ss_pred hheEEEeccccce-eeeecc
Confidence 44444433 444443
No 161
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.77 E-value=0.0055 Score=60.84 Aligned_cols=65 Identities=14% Similarity=0.248 Sum_probs=56.3
Q ss_pred cceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..++|||||-+-+|++||.+.+...+. ..+..+.++-++.+|.++|||+|...+..+....|++|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~--~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiL 144 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGL--AQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEIL 144 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhH--HHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhc
Confidence 468999999999999999998887632 36777788888889999999999999999888888875
No 162
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.69 E-value=0.0092 Score=59.28 Aligned_cols=77 Identities=17% Similarity=0.261 Sum_probs=57.4
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcC--CeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFG--EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G--~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...+|||||-|++|+++|.+.+...| .+..+++.. + | .-|+++|||+|...+..++.+.+.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFE----N----R---------~NGQSKG~AL~~~~SdAa~Kq~Me 142 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFE----N----R---------TNGQSKGYALLVLNSDAAVKQTME 142 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhh----c----c---------cCCcccceEEEEecchHHHHHHHH
Confidence 45689999999999999999998877 333334321 1 1 125688999999999988888887
Q ss_pred -ccceEEcceeeccccC
Q 015686 303 -FNMAVIGGNHIRLDRA 318 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a 318 (402)
|--..|+|+.-.|...
T Consensus 143 iLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 143 ILPTKTIHGQSPTVLSY 159 (498)
T ss_pred hcccceecCCCCeeecc
Confidence 7777888876555443
No 163
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.65 E-value=0.013 Score=56.16 Aligned_cols=84 Identities=15% Similarity=0.091 Sum_probs=71.7
Q ss_pred HHHHH-hccceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeec
Q 015686 297 TEAAL-AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRH 375 (402)
Q Consensus 297 A~~Al-~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d 375 (402)
|..|- +|++....|+.|+|.++.. ..|||.||..-+.-+.|.+.|..| |.|...-++.|
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~~----------------a~l~V~nl~~~~sndll~~~f~~f----g~~e~av~~vD 66 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAMH----------------AELYVVNLMQGASNDLLEQAFRRF----GPIERAVAKVD 66 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeecc----------------ceEEEEecchhhhhHHHHHhhhhc----Cccchheeeec
Confidence 44444 4899999999999999863 569999999999999999999999 88988767666
Q ss_pred CCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 376 PHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 376 ~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+++.|-++|.|...-.|..|+..
T Consensus 67 -~r~k~t~eg~v~~~~k~~a~~a~rr 91 (275)
T KOG0115|consen 67 -DRGKPTREGIVEFAKKPNARKAARR 91 (275)
T ss_pred -ccccccccchhhhhcchhHHHHHHH
Confidence 5688889999999999999888764
No 164
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.54 E-value=0.021 Score=58.26 Aligned_cols=64 Identities=22% Similarity=0.351 Sum_probs=54.4
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeec---CCCC--CC--------ceEEEEEecCHHHHHHHHHh
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRH---PHMR--VG--------KGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d---~~~g--~s--------kG~aFV~F~s~e~A~~Al~~ 401 (402)
++++|.+-|||.+-.-+.|.++|..| |.|..|||+.- +.++ .+ +-.|||+|.....|.+|.++
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~----G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTV----GSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcc----cceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 68999999999998889999999999 99999999876 3332 22 34689999999999999887
Q ss_pred C
Q 015686 402 T 402 (402)
Q Consensus 402 l 402 (402)
|
T Consensus 306 ~ 306 (484)
T KOG1855|consen 306 L 306 (484)
T ss_pred h
Confidence 5
No 165
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.53 E-value=0.028 Score=49.85 Aligned_cols=70 Identities=21% Similarity=0.328 Sum_probs=51.2
Q ss_pred ccEEEEeCCC-----CcCcHH----HHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeech
Q 015686 225 LRTIFVGNLP-----LKVKKK----TLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQ 295 (402)
Q Consensus 225 ~~tVfVgNLP-----~~vtee----~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e 295 (402)
..||.|.=+. ...-.+ +|...|..||.|.-||+.. |.-+|.|.+.+
T Consensus 27 DaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~-------------------------~~mwVTF~dg~ 81 (146)
T PF08952_consen 27 DATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG-------------------------DTMWVTFRDGQ 81 (146)
T ss_dssp T-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET-------------------------TCEEEEESSCH
T ss_pred CceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC-------------------------CeEEEEECccH
Confidence 4667666554 122233 6778899999988777721 57899999999
Q ss_pred hHHHHHhccceEEcceeeccccCC
Q 015686 296 STEAALAFNMAVIGGNHIRLDRAC 319 (402)
Q Consensus 296 ~A~~Al~lng~~l~Gr~I~V~~a~ 319 (402)
+|-+|+.++|..+.|+.|.|..-.
T Consensus 82 sALaals~dg~~v~g~~l~i~LKt 105 (146)
T PF08952_consen 82 SALAALSLDGIQVNGRTLKIRLKT 105 (146)
T ss_dssp HHHHHHHGCCSEETTEEEEEEE--
T ss_pred HHHHHHccCCcEECCEEEEEEeCC
Confidence 999999999999999999998754
No 166
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.50 E-value=0.015 Score=58.07 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=56.9
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeE--------EEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE--------AVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~--------~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
....+|||.+||..++.++|..+|.+| |.|. .|.|.+|..|+.++|-|.|+|.+...|+.||..
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qc----g~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~ 135 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQC----GVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEW 135 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhc----ceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhh
Confidence 345789999999999999999999998 6663 467888999999999999999999999999864
No 167
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.24 E-value=0.038 Score=53.94 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=50.4
Q ss_pred HHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH-hccceEEcceeecccc
Q 015686 239 KKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDR 317 (402)
Q Consensus 239 ee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al-~lng~~l~Gr~I~V~~ 317 (402)
++++.+.+.+||.|..|.|..++......- ---||+|...++|.+|+ .|||..|.||.+..++
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~dea----------------vRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEA----------------VRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchh----------------heeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 557788899999999998876653221111 25899999999999998 4999999999988776
Q ss_pred C
Q 015686 318 A 318 (402)
Q Consensus 318 a 318 (402)
.
T Consensus 364 y 364 (378)
T KOG1996|consen 364 Y 364 (378)
T ss_pred c
Confidence 4
No 168
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.99 E-value=0.067 Score=56.36 Aligned_cols=74 Identities=20% Similarity=0.221 Sum_probs=54.4
Q ss_pred ccEEEEeCCCCcC------cHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHH
Q 015686 225 LRTIFVGNLPLKV------KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (402)
Q Consensus 225 ~~tVfVgNLP~~v------tee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~ 298 (402)
...|+|-|+|--- -..-|..+|+++|+|..+-+ |+...++ ++||.|++|.+..+|+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~---P~~e~gg---------------tkG~lf~E~~~~~~A~ 119 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYY---PIDEEGG---------------TKGYLFVEYASMRDAK 119 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceee---ccCccCC---------------eeeEEEEEecChhhHH
Confidence 4679999998532 23456678999999987766 3322222 5699999999999999
Q ss_pred HHHh-ccceEEcc-eeeccc
Q 015686 299 AALA-FNMAVIGG-NHIRLD 316 (402)
Q Consensus 299 ~Al~-lng~~l~G-r~I~V~ 316 (402)
.|++ |||+.|+- +...|.
T Consensus 120 ~aVK~l~G~~ldknHtf~v~ 139 (698)
T KOG2314|consen 120 KAVKSLNGKRLDKNHTFFVR 139 (698)
T ss_pred HHHHhcccceecccceEEee
Confidence 9996 99998754 445544
No 169
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.86 E-value=0.029 Score=61.79 Aligned_cols=75 Identities=31% Similarity=0.440 Sum_probs=63.2
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..+.+||++|++++....|...|..||.|..|.+.. ..-||||.|.+...++.|+.
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-----------------------gq~yayi~yes~~~aq~a~~~ 510 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-----------------------GQPYAYIQYESPPAAQAATHD 510 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeeccc-----------------------CCcceeeecccCccchhhHHH
Confidence 456799999999999999999999999998887732 12499999999999999996
Q ss_pred ccceEEcc--eeeccccCCCc
Q 015686 303 FNMAVIGG--NHIRLDRACPP 321 (402)
Q Consensus 303 lng~~l~G--r~I~V~~a~~~ 321 (402)
|-|.-|.| +.|.|.++..+
T Consensus 511 ~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 511 MRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred HhcCcCCCCCcccccccccCC
Confidence 88888865 67888887643
No 170
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.24 E-value=0.049 Score=49.93 Aligned_cols=73 Identities=14% Similarity=0.112 Sum_probs=42.8
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhh-cCCeeEEE-EeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIK-FGEIDSVR-IRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~-~G~I~~vr-i~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...|-|++||+++|+++++..+.. ++....-. +..........+ ..-.-|||.|.+.+++..-..
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~-------------~~~SRaYi~F~~~~~~~~F~~ 73 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKP-------------PTYSRAYINFKNPEDLLEFRD 73 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTT-------------S--EEEEEEESSCHHHHHHHH
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCC-------------CcceEEEEEeCCHHHHHHHHH
Confidence 567999999999999999997776 66542111 110001111111 123579999999999887774
Q ss_pred -ccceEEcc
Q 015686 303 -FNMAVIGG 310 (402)
Q Consensus 303 -lng~~l~G 310 (402)
++|+.|.+
T Consensus 74 ~~~g~~F~D 82 (176)
T PF03467_consen 74 RFDGHVFVD 82 (176)
T ss_dssp HCTTEEEE-
T ss_pred hcCCcEEEC
Confidence 99988754
No 171
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.80 E-value=0.027 Score=59.53 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=59.6
Q ss_pred CCCcccEEEEeCCCCcCcHHHHHHHhh-hcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHH
Q 015686 221 EGKLLRTIFVGNLPLKVKKKTLIKEFI-KFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (402)
Q Consensus 221 e~~~~~tVfVgNLP~~vtee~L~~~F~-~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~ 299 (402)
....+..|||.||=.-.|.-+|+.++. .+|.|...+| +.+ +..|||.|.+.+.|..
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--DkI---------------------KShCyV~yss~eEA~a 496 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DKI---------------------KSHCYVSYSSVEEAAA 496 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HHh---------------------hcceeEecccHHHHHH
Confidence 344578899999999999999999999 6777777643 111 2489999999999888
Q ss_pred HH-hccceEE---cceeeccccCC
Q 015686 300 AL-AFNMAVI---GGNHIRLDRAC 319 (402)
Q Consensus 300 Al-~lng~~l---~Gr~I~V~~a~ 319 (402)
-. +|||..| +++.|.+.+..
T Consensus 497 tr~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 497 TREALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred HHHHHhccccCCCCCceeEeeecc
Confidence 77 4999877 56778777754
No 172
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.57 E-value=0.35 Score=36.79 Aligned_cols=57 Identities=16% Similarity=0.125 Sum_probs=45.5
Q ss_pred ceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..|+|+|+.. ++.++|+.+|..|-. ......|.++-|. -|=|.|.+...|.+||.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~-~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFD-EEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcc-cCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 5799999974 899999999988711 0345677787763 3789999999999999876
No 173
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=93.37 E-value=0.061 Score=54.38 Aligned_cols=61 Identities=16% Similarity=0.285 Sum_probs=51.0
Q ss_pred ceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCC---CCCCceEEEEEecCHHHHHHHHHh
Q 015686 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPH---MRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~---~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..|.|.||.++++.++|+.||..+ |.|..++|+.... -......|||-|.+...+..|-.|
T Consensus 8 ~vIqvanispsat~dqm~tlFg~l----GkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhL 71 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNL----GKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHL 71 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhc----cccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhh
Confidence 489999999999999999999998 9999999877432 234567899999999888777654
No 174
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=93.35 E-value=0.18 Score=53.30 Aligned_cols=62 Identities=11% Similarity=0.057 Sum_probs=50.3
Q ss_pred cceeEecCCCCCCC------HHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 336 KKTVFVGNLPFDVK------DEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 336 ~~tLfV~NLp~~~t------eedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
...|+|.|+|.--. ..-|..+|+.+ |.|..+.++.+...| .+||.|++|.+..+|..|++-|
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~----gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l 125 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKA----GKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSL 125 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhh----ccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhc
Confidence 46799999985322 23456788999 999999999997755 9999999999999999998743
No 175
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.03 E-value=0.47 Score=38.24 Aligned_cols=52 Identities=15% Similarity=0.300 Sum_probs=38.5
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
.+..||+ .|..+...+|..+|+.||.|. |.++.+ .-|||...+.+.|..++.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d------------------------TSAfV~l~~r~~~~~v~~ 60 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND------------------------TSAFVALHNRDQAKVVMN 60 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT------------------------TEEEEEECCCHHHHHHHH
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC------------------------CcEEEEeecHHHHHHHHH
Confidence 3556666 999999999999999999884 555321 369999999999998874
No 176
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=92.87 E-value=0.062 Score=51.55 Aligned_cols=63 Identities=11% Similarity=0.135 Sum_probs=50.8
Q ss_pred cceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCC--------CCCce----EEEEEecCHHHHHHHHHhC
Q 015686 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM--------RVGKG----IAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~--------g~skG----~aFV~F~s~e~A~~Al~~l 402 (402)
...||++|||+.+...-|+++|..| |.|-.|.|.....+ |.+++ -|.|+|.+...|..+..+|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~y----GeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~L 148 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQY----GEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELL 148 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhc----cccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHh
Confidence 3579999999999999999999999 99999888765444 22332 2789999999998887765
No 177
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=92.18 E-value=0.33 Score=39.11 Aligned_cols=52 Identities=23% Similarity=0.365 Sum_probs=38.3
Q ss_pred ceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
...+|. .|..+...||.++|+.| |.| .|.++-| .-|||.+.+.+.|..|+.+
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspf----G~I-~VsWi~d-------TSAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPF----GQI-YVSWIND-------TSAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCC----CCE-EEEEECT-------TEEEEEECCCHHHHHHHHH
T ss_pred eEEEEe-CchHhhhhhHHHHhccC----CcE-EEEEEcC-------CcEEEEeecHHHHHHHHHH
Confidence 344555 99999999999999999 766 4566655 3699999999999988875
No 178
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=92.06 E-value=0.052 Score=52.09 Aligned_cols=62 Identities=26% Similarity=0.362 Sum_probs=47.8
Q ss_pred HHHHHHhh-hcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-ccceEEcceeecccc
Q 015686 240 KTLIKEFI-KFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNMAVIGGNHIRLDR 317 (402)
Q Consensus 240 e~L~~~F~-~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-lng~~l~Gr~I~V~~ 317 (402)
++|...|. +||.|..+.+... .... -.|-+||.|...++|++|+. ||+..+.|++|...+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N----l~~h--------------l~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN----LGDH--------------LVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc----cchh--------------hhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence 55666666 8999998866331 1111 24799999999999999996 999999999999887
Q ss_pred CC
Q 015686 318 AC 319 (402)
Q Consensus 318 a~ 319 (402)
+.
T Consensus 145 ~p 146 (260)
T KOG2202|consen 145 SP 146 (260)
T ss_pred cC
Confidence 63
No 179
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=90.74 E-value=0.15 Score=41.47 Aligned_cols=72 Identities=19% Similarity=0.159 Sum_probs=45.7
Q ss_pred EEEEEeechhHHHHHhccce--EEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhc
Q 015686 287 AYIVFKSEQSTEAALAFNMA--VIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFC 358 (402)
Q Consensus 287 aFV~F~s~e~A~~Al~lng~--~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~ 358 (402)
|+|.|....-|+..+.+..+ .+.++.+.|...--.......-........++|.|.|||..+.+++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999974443 5566655554321110000000011134578999999999999999998654
No 180
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=90.73 E-value=0.12 Score=51.44 Aligned_cols=82 Identities=17% Similarity=0.399 Sum_probs=59.7
Q ss_pred cEEEEeCCCCcCcHHHHH---HHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 226 RTIFVGNLPLKVKKKTLI---KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 226 ~tVfVgNLP~~vtee~L~---~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
.-+||-+||.....+.+. .+|.+||.|..|.+...+- ....-+ ...-+||.|...++|..||.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S---~~s~~~-----------~~~s~yITy~~~eda~rci~ 143 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPS---SSSSSG-----------GTCSVYITYEEEEDADRCID 143 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcc---cccCCC-----------CCCcccccccchHhhhhHHH
Confidence 458999999887666655 4899999999988754331 001100 11238999999999999996
Q ss_pred -ccceEEcceeeccccCCCc
Q 015686 303 -FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~ 321 (402)
.+|..+.|+.|...+...+
T Consensus 144 ~v~g~~~dg~~lka~~gttk 163 (327)
T KOG2068|consen 144 DVDGFVDDGRALKASLGTTK 163 (327)
T ss_pred HhhhHHhhhhhhHHhhCCCc
Confidence 9999999999887766543
No 181
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.57 E-value=0.41 Score=47.08 Aligned_cols=72 Identities=21% Similarity=0.263 Sum_probs=53.3
Q ss_pred cEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhccc
Q 015686 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNM 305 (402)
Q Consensus 226 ~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~lng 305 (402)
.-|-|=++|+... ..|..+|.+||.|..... ++.| -|-+|.|.+.-+|++||..||
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~----------~~ng-------------NwMhirYssr~~A~KALskng 253 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVT----------PSNG-------------NWMHIRYSSRTHAQKALSKNG 253 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeec----------CCCC-------------ceEEEEecchhHHHHhhhhcC
Confidence 3466667877654 567789999999865533 1222 489999999999999999999
Q ss_pred eEEccee-eccccCCCc
Q 015686 306 AVIGGNH-IRLDRACPP 321 (402)
Q Consensus 306 ~~l~Gr~-I~V~~a~~~ 321 (402)
.+|+|.. |-|..+..+
T Consensus 254 ~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 254 TIIDGDVMIGVKPCTDK 270 (350)
T ss_pred eeeccceEEeeeecCCH
Confidence 9998854 557665543
No 182
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=90.06 E-value=0.19 Score=53.41 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=50.0
Q ss_pred ccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 332 ~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
....++.|||.||-..+|.-+|+.++..- ||.|... ++|. -+..|||.|.+.++|...+.+|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rt---gg~Vee~--WmDk----IKShCyV~yss~eEA~atr~Al 501 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRT---GGNVEEF--WMDK----IKSHCYVSYSSVEEAAATREAL 501 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhc---cCchHHH--HHHH----hhcceeEecccHHHHHHHHHHH
Confidence 34568999999999999999999999854 2777765 4553 3667999999999999887765
No 183
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=88.91 E-value=0.26 Score=52.98 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=76.0
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
...+|||+||...+..+-++.+...||.|.+.... -|||+.|..+.....|+.
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~--------------------------~fgf~~f~~~~~~~ra~r~ 92 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD--------------------------KFGFCEFLKHIGDLRASRL 92 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh--------------------------hhcccchhhHHHHHHHHHH
Confidence 36789999999999999999999999987554320 299999999999888885
Q ss_pred ccceEEcceeeccccCC----CccccccC--CCCCccCC---cceeEecCCCCCCCHHHHHHHhccC
Q 015686 303 FNMAVIGGNHIRLDRAC----PPRKKLKG--EDAPLYDI---KKTVFVGNLPFDVKDEEIYQLFCGL 360 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~----~~~k~~~~--~~~~~~~~---~~tLfV~NLp~~~teedL~~~F~~f 360 (402)
++...++|..+.+..-. .+.+.... .....+.+ .+.++|+|+|-.+.+......|.-.
T Consensus 93 ~t~~~~~~~kl~~~~d~q~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is 159 (668)
T KOG2253|consen 93 LTELNIDDQKLIENVDEQTIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQIS 159 (668)
T ss_pred hcccCCCcchhhccchhhhhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHhcc
Confidence 77777888777665421 11100000 00111111 5778899999888777776666543
No 184
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=87.76 E-value=0.26 Score=51.02 Aligned_cols=74 Identities=24% Similarity=0.377 Sum_probs=60.3
Q ss_pred cccEEEEeCCCCcC-cHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 224 LLRTIFVGNLPLKV-KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~v-tee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
+.+.+-+.-.|+.. +-.+|..+|.+||.|..|.+... + -.|.|.|.+...|-.|..
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-------~----------------~~a~vTF~t~aeag~a~~ 427 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-------S----------------LHAVVTFKTRAEAGEAYA 427 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-------h----------------hhheeeeeccccccchhc
Confidence 35666677777775 67899999999999998887221 1 269999999999988989
Q ss_pred ccceEEcceeeccccCCC
Q 015686 303 FNMAVIGGNHIRLDRACP 320 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~ 320 (402)
.++..|+||.|.|.|..+
T Consensus 428 s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 428 SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cccceecCceeEEEEecC
Confidence 999999999999988764
No 185
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=87.51 E-value=2.3 Score=32.35 Aligned_cols=51 Identities=16% Similarity=0.303 Sum_probs=41.0
Q ss_pred cEEEEeCCCCcCcHHHHHHHhhhc----CCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 226 RTIFVGNLPLKVKKKTLIKEFIKF----GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 226 ~tVfVgNLP~~vtee~L~~~F~~~----G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
..|+|+|+. +++.++|..+|..| + ...|.|+.+. -|-|.|.+.+.|..||
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt------------------------ScNvvf~d~~~A~~AL 59 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT------------------------SCNVVFKDEETAARAL 59 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC------------------------cEEEEECCHHHHHHHH
Confidence 569999994 58889999999998 5 4467774321 4889999999999998
Q ss_pred h
Q 015686 302 A 302 (402)
Q Consensus 302 ~ 302 (402)
.
T Consensus 60 ~ 60 (62)
T PF10309_consen 60 V 60 (62)
T ss_pred H
Confidence 4
No 186
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=86.78 E-value=0.9 Score=41.64 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=36.6
Q ss_pred cceeEecCCCCCCCHHHHHHHhcc-CCCCCCCe---EEEEEeecCCC--CCCceEEEEEecCHHHHHHHHH
Q 015686 336 KKTVFVGNLPFDVKDEEIYQLFCG-LNDLESSV---EAVRVIRHPHM--RVGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~-f~~~~G~I---~~vrI~~d~~~--g~skG~aFV~F~s~e~A~~Al~ 400 (402)
...|.|++||+++|++++...+.. + +.. .++.-...... ...-.-|||.|.+.+++..-+.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l----~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~ 73 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWL----PDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRD 73 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS------SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHH
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhc----ccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHH
Confidence 468999999999999999998777 4 333 34432222111 1124569999999888665443
No 187
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=83.67 E-value=3.3 Score=34.46 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=39.1
Q ss_pred cceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEE-EeecC------CCCCCceEEEEEecCHHHHHHHHH
Q 015686 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVR-VIRHP------HMRVGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vr-I~~d~------~~g~skG~aFV~F~s~e~A~~Al~ 400 (402)
.+-|.|=+.|.. ....|.+.|+.| |.|.... +.++. ........-.|+|.++.+|.+||.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~----G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~ 72 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSF----GTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ 72 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCC----S-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhc----ceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH
Confidence 456888888886 577888999999 8887764 11110 001135588999999999999985
No 188
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=83.67 E-value=1.8 Score=37.64 Aligned_cols=82 Identities=17% Similarity=0.108 Sum_probs=59.5
Q ss_pred ceEEEEEeechhHHHHHhccceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCC-CCHHHHHHHhccCCCC
Q 015686 285 VHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFD-VKDEEIYQLFCGLNDL 363 (402)
Q Consensus 285 G~aFV~F~s~e~A~~Al~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~-~teedL~~~F~~f~~~ 363 (402)
|+..+.|.+.+++..++......+.|..|.+....+...... ........=|.|.|||.. ++++-|+.+.+.+
T Consensus 56 ~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~~---~~~~~~~vWVri~glP~~~~~~~~~~~i~~~i--- 129 (153)
T PF14111_consen 56 NLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPSE---VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKI--- 129 (153)
T ss_pred CeEEEEEEeccceeEEEecccccccccchhhhhhcccccccc---cceeccchhhhhccCCHHHhhhHHHHHHHHhc---
Confidence 799999999999999998878888998888887753221110 000112344777899988 6778888888888
Q ss_pred CCCeEEEEEe
Q 015686 364 ESSVEAVRVI 373 (402)
Q Consensus 364 ~G~I~~vrI~ 373 (402)
|.+..+...
T Consensus 130 -G~~i~vD~~ 138 (153)
T PF14111_consen 130 -GEPIEVDEN 138 (153)
T ss_pred -CCeEEEEcC
Confidence 888877654
No 189
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=83.14 E-value=12 Score=37.01 Aligned_cols=167 Identities=14% Similarity=0.168 Sum_probs=92.8
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH---
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL--- 301 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al--- 301 (402)
.|.|.+.||..+++--.+...|.+||+|.+|-++.... .+. +..+.-.+..-..+-|-+.+.+-.-.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~----~~~------d~~~~d~~~~SilLSFlsr~~CLdFYNnv 84 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSND----KPS------DDYNDDKNNQSILLSFLSREICLDFYNNV 84 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCC----ccc------ccccccccceEEEEeeechHHHHHHHHHH
Confidence 67899999999999999999999999999999854321 111 11111223346888899887754322
Q ss_pred -h-ccce--EEcceeeccccCCCcccccc--CCC---------------CCccCCcceeEecCCCCCCCHHHHHHHhccC
Q 015686 302 -A-FNMA--VIGGNHIRLDRACPPRKKLK--GED---------------APLYDIKKTVFVGNLPFDVKDEEIYQLFCGL 360 (402)
Q Consensus 302 -~-lng~--~l~Gr~I~V~~a~~~~k~~~--~~~---------------~~~~~~~~tLfV~NLp~~~teedL~~~F~~f 360 (402)
+ |... .+.-..|.|.+..-...... .+. --.....|.|.|-=-..-..++-|.+.+ +|
T Consensus 85 LQrLsEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL-~f 163 (309)
T PF10567_consen 85 LQRLSEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKL-PF 163 (309)
T ss_pred HHHHHHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhh-hh
Confidence 1 2221 23444455444331100000 000 0012345667764332222333333322 11
Q ss_pred CCCCC----CeEEEEEeec--CCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 361 NDLES----SVEAVRVIRH--PHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 361 ~~~~G----~I~~vrI~~d--~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
....+ .+++|.|+.- +...-+..||.++|-+...|...++.|
T Consensus 164 L~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYl 211 (309)
T PF10567_consen 164 LKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYL 211 (309)
T ss_pred hccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHH
Confidence 11012 4677777653 334457889999999999998887653
No 190
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=82.17 E-value=3.5 Score=36.62 Aligned_cols=59 Identities=17% Similarity=0.140 Sum_probs=43.1
Q ss_pred cCCcceeEecCCCCCC----CHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDV----KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~----teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.++-.||.|+=|..++ +-..|-+.++.| |.|.+|-+. ++--|.|.|.+..+|-.|+.++
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~f----GpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af 145 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVF----GPIQSVTLC-------GRQSAVVVFKDITSACKAVSAF 145 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhc----CCcceeeec-------CCceEEEEehhhHHHHHHHHhh
Confidence 4566788886555444 333445566788 999998765 3557999999999999998764
No 191
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=81.02 E-value=6 Score=42.15 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=45.9
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.|.|+-||.++-.++|+.||..- -|-.+.+|.+..+- -=||+|.+..+|+.|.+.|
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~e--ncPk~iscefa~N~-------nWyITfesd~DAQqAykyl 232 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGE--NCPKVISCEFAHND-------NWYITFESDTDAQQAYKYL 232 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccC--CCCCceeeeeeecC-------ceEEEeecchhHHHHHHHH
Confidence 34677889999999999999999652 12567888775541 1399999999999998765
No 192
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=80.41 E-value=1.5 Score=42.27 Aligned_cols=74 Identities=18% Similarity=0.273 Sum_probs=53.9
Q ss_pred cEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-cc
Q 015686 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FN 304 (402)
Q Consensus 226 ~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-ln 304 (402)
..|||.||+.-+.-+.|..-|+.||+|....++.+ +.. +..|-++|.|...-.+..|+. ++
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD---~r~---------------k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD---DRG---------------KPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec---ccc---------------cccccchhhhhcchhHHHHHHHhc
Confidence 45999999999999999999999999987655322 222 234689999999999999985 22
Q ss_pred --ce--EEcceeecccc
Q 015686 305 --MA--VIGGNHIRLDR 317 (402)
Q Consensus 305 --g~--~l~Gr~I~V~~ 317 (402)
+. ...++...|..
T Consensus 94 ~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 94 EGGFGGTTGGRPVGVEP 110 (275)
T ss_pred cCccccCCCCCccCCCh
Confidence 21 23455555543
No 193
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=79.80 E-value=2.8 Score=37.25 Aligned_cols=70 Identities=26% Similarity=0.286 Sum_probs=50.5
Q ss_pred ccEEEEeCCCCcC----cHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHH
Q 015686 225 LRTIFVGNLPLKV----KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (402)
Q Consensus 225 ~~tVfVgNLP~~v----tee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~A 300 (402)
-.||.|+=|..++ +-..|...++.||+|.+|.+.. +--|.|.|.+..+|=.|
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------------------------rqsavVvF~d~~SAC~A 141 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------------------------RQSAVVVFKDITSACKA 141 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------------------------CceEEEEehhhHHHHHH
Confidence 5678887655554 4455666788999999998731 23699999999999999
Q ss_pred HhccceEEcceeeccccC
Q 015686 301 LAFNMAVIGGNHIRLDRA 318 (402)
Q Consensus 301 l~lng~~l~Gr~I~V~~a 318 (402)
+..-+....|..+.+.+-
T Consensus 142 v~Af~s~~pgtm~qCsWq 159 (166)
T PF15023_consen 142 VSAFQSRAPGTMFQCSWQ 159 (166)
T ss_pred HHhhcCCCCCceEEeecc
Confidence 964444666777776553
No 194
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=79.41 E-value=4.5 Score=37.41 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=41.8
Q ss_pred cHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-cc--ceEEcceeec
Q 015686 238 KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FN--MAVIGGNHIR 314 (402)
Q Consensus 238 tee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-ln--g~~l~Gr~I~ 314 (402)
....|+.+|..|+.+....+.. +-+-..|.|.+.+.|..|.. |+ +..+.|..|+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~-----------------------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~ 64 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK-----------------------SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLR 64 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET-----------------------TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-E
T ss_pred hHHHHHHHHHhcCCceEEEEcC-----------------------CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceE
Confidence 3578999999999887665521 22458999999999999985 88 8999999999
Q ss_pred cccCC
Q 015686 315 LDRAC 319 (402)
Q Consensus 315 V~~a~ 319 (402)
|.++.
T Consensus 65 ~yf~~ 69 (184)
T PF04847_consen 65 VYFGQ 69 (184)
T ss_dssp EE---
T ss_pred EEEcc
Confidence 98874
No 195
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=79.05 E-value=3.8 Score=41.08 Aligned_cols=63 Identities=19% Similarity=0.247 Sum_probs=45.7
Q ss_pred CcceeEecCCCCCCCHHHH------HHHhccCCCCCCCeEEEEEeecCCC-CCCce-E-EEEEecCHHHHHHHHHh
Q 015686 335 IKKTVFVGNLPFDVKDEEI------YQLFCGLNDLESSVEAVRVIRHPHM-RVGKG-I-AYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL------~~~F~~f~~~~G~I~~vrI~~d~~~-g~skG-~-aFV~F~s~e~A~~Al~~ 401 (402)
..+-+||-+||+.+..+++ .++|.+| |.|..|-|-+...+ +...+ + .||+|.+.++|.+||..
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQy----GkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~ 184 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQY----GKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAE 184 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhc----cceeEEEecccccccccccccceEEEEecchHHHHHHHHH
Confidence 3567899999998877763 3688888 99998876554311 11122 2 49999999999999864
No 196
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=78.63 E-value=8.8 Score=29.51 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=42.0
Q ss_pred cCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-ccceEEcceeec
Q 015686 236 KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNMAVIGGNHIR 314 (402)
Q Consensus 236 ~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-lng~~l~Gr~I~ 314 (402)
.++-.+|+..+..|+- ..|+. .+ .| =||.|.+..+|+.|.. .+|..+.++.|.
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~----------d~--------------tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD----------DR--------------TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe----------cC--------------CE-EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 5788999999999983 23433 11 14 3899999999999995 899999888876
Q ss_pred c
Q 015686 315 L 315 (402)
Q Consensus 315 V 315 (402)
+
T Consensus 65 M 65 (66)
T PF11767_consen 65 M 65 (66)
T ss_pred e
Confidence 5
No 197
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=78.45 E-value=6.1 Score=41.09 Aligned_cols=67 Identities=15% Similarity=0.254 Sum_probs=54.8
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhc-CCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKF-GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~-G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
...|+|=.+|-.++-.+|..|+..| -.|..|+|++++.. ++=..+|.|.+..+|.....
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-------------------nrymvLIkFr~q~da~~Fy~e 134 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-------------------NRYMVLIKFRDQADADTFYEE 134 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-------------------ceEEEEEEeccchhHHHHHHH
Confidence 6889999999999999999999865 47888998774432 22368999999999999885
Q ss_pred ccceEEcc
Q 015686 303 FNMAVIGG 310 (402)
Q Consensus 303 lng~~l~G 310 (402)
+||..|+.
T Consensus 135 fNGk~Fn~ 142 (493)
T KOG0804|consen 135 FNGKQFNS 142 (493)
T ss_pred cCCCcCCC
Confidence 99998754
No 198
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.40 E-value=11 Score=38.66 Aligned_cols=67 Identities=19% Similarity=0.253 Sum_probs=51.7
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCe-eEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEI-DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I-~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
..+.|=|.|+|.....++|...|..||.- -.|.|+.+ -+||..|.+...|..||.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------------------------thalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------------------------THALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------------------------ceeEEeecchHHHHHHhh
Confidence 57889999999999999999999999743 23444321 279999999999999998
Q ss_pred ccceEEcceeec
Q 015686 303 FNMAVIGGNHIR 314 (402)
Q Consensus 303 lng~~l~Gr~I~ 314 (402)
+.+.++.-|.|.
T Consensus 446 ~kh~~lKiRpLa 457 (528)
T KOG4483|consen 446 LKHDWLKIRPLA 457 (528)
T ss_pred ccCceEEeeehh
Confidence 855566555543
No 199
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=74.28 E-value=14 Score=31.20 Aligned_cols=66 Identities=18% Similarity=0.228 Sum_probs=43.4
Q ss_pred cEEEEeCCCCcCcHHHHHHHhhhc-CCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 226 RTIFVGNLPLKVKKKTLIKEFIKF-GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 226 ~tVfVgNLP~~vtee~L~~~F~~~-G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
..+-+...|+.++-+.|..+.+.+ ..|..++|+++. . + ++=.+++.|.+..+|..... +
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~----~-p--------------nrymVLikF~~~~~Ad~Fy~~f 74 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG----T-P--------------NRYMVLIKFRDQESADEFYEEF 74 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC----C-C--------------ceEEEEEEECCHHHHHHHHHHh
Confidence 334455555556666776555554 356677775532 1 1 23478999999999999885 9
Q ss_pred cceEEcc
Q 015686 304 NMAVIGG 310 (402)
Q Consensus 304 ng~~l~G 310 (402)
||..|+-
T Consensus 75 NGk~Fns 81 (110)
T PF07576_consen 75 NGKPFNS 81 (110)
T ss_pred CCCccCC
Confidence 9987743
No 200
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=73.64 E-value=25 Score=29.71 Aligned_cols=60 Identities=10% Similarity=0.174 Sum_probs=43.9
Q ss_pred cceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHH
Q 015686 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~ 400 (402)
...+.+...|.-++-++|..+.+.+. ..|..++|++|.. .++-.+.+.|.+...|..-..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~---~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~ 72 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFR---EDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYE 72 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhccc---ccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHH
Confidence 44555566666666777877767763 5789999999833 257789999999999987543
No 201
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=67.99 E-value=10 Score=39.49 Aligned_cols=59 Identities=7% Similarity=0.215 Sum_probs=49.8
Q ss_pred cceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHH
Q 015686 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLR 399 (402)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al 399 (402)
++.|+|-.+|..++-.||..|+..|. -.|..|+|+||.. + ++-...|.|.+..+|..-.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~---~~I~~irivRd~~-p-nrymvLIkFr~q~da~~Fy 132 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFI---KQISDIRIVRDGM-P-NRYMVLIKFRDQADADTFY 132 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHh---hhhheeEEeecCC-C-ceEEEEEEeccchhHHHHH
Confidence 78999999999999999999998873 5899999999732 2 3556999999999997653
No 202
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.45 E-value=38 Score=36.56 Aligned_cols=86 Identities=23% Similarity=0.220 Sum_probs=55.9
Q ss_pred CCcccEEEEeCCCCc-CcHHHHHHHhhhc----CCeeEEEEeeecccCCCCCcc------chh---h-------------
Q 015686 222 GKLLRTIFVGNLPLK-VKKKTLIKEFIKF----GEIDSVRIRSVPIIDTKIPRK------GAI---L------------- 274 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~-vtee~L~~~F~~~----G~I~~vri~~~~~~~~~~~rk------g~~---~------------- 274 (402)
....+.|-|-||.|+ +...+|..+|..| |.|.+|.|.. ...+..|. |+. .
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYp---SeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ 247 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYP---SEFGKERMKEEEVHGPPKELFKPVEEYKESESDD 247 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEech---hhhhHHHhhhhcccCChhhhccccccCcccccch
Confidence 344688999999998 7899999999976 5888888732 12121111 000 0
Q ss_pred ----------hhhccc-CCCcceEEEEEeechhHHHHHh-ccceEEcc
Q 015686 275 ----------QKQINE-NADSVHAYIVFKSEQSTEAALA-FNMAVIGG 310 (402)
Q Consensus 275 ----------~~~~~~-~~skG~aFV~F~s~e~A~~Al~-lng~~l~G 310 (402)
..++-- ..-.=||.|+|.+...|.+... ++|..|..
T Consensus 248 ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEs 295 (650)
T KOG2318|consen 248 EEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFES 295 (650)
T ss_pred hhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecc
Confidence 000000 0112389999999999998885 99998854
No 203
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=64.57 E-value=14 Score=36.60 Aligned_cols=64 Identities=14% Similarity=0.088 Sum_probs=45.5
Q ss_pred CcceeEecCC--CCCCC---HHHHHHHhccCCCCCCCeEEEEEeecCCCCCCce-EEEEEecCHHHHHHHHHhC
Q 015686 335 IKKTVFVGNL--PFDVK---DEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG-IAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 335 ~~~tLfV~NL--p~~~t---eedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG-~aFV~F~s~e~A~~Al~~l 402 (402)
+.+.|.++|+ +-.++ ++++...+.+| |.|..|.|+-++..-...- --||+|...++|.+|+-+|
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKy----g~V~~viifeip~~p~deavRiFveF~r~e~aiKA~Vdl 349 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKY----GKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDL 349 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhh----cceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhc
Confidence 3455777776 33343 45778888999 9999998877754332222 3799999999999998654
No 204
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=64.57 E-value=7.1 Score=38.38 Aligned_cols=48 Identities=23% Similarity=0.236 Sum_probs=36.4
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCe-eEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeech
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEI-DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQ 295 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I-~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e 295 (402)
..-|||+|||.++-..+|+..+.+.|.+ .++.| +| ..|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------------kg-----------~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------------KG-----------HFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee------------ec-----------CCcceeEecCCcc
Confidence 4559999999999999999999988744 23333 12 3478999998754
No 205
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=63.25 E-value=12 Score=40.03 Aligned_cols=66 Identities=15% Similarity=0.237 Sum_probs=49.9
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhh--cCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIK--FGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~--~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
.|.|.|+-||-.+-.++|+.+|.. |-++.+|.+-. +. -=||.|.+..+|+.|.+
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~-----------------------N~-nWyITfesd~DAQqAyk 230 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAH-----------------------ND-NWYITFESDTDAQQAYK 230 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeee-----------------------cC-ceEEEeecchhHHHHHH
Confidence 577899999999999999999984 88888887722 11 25999999999999975
Q ss_pred -ccc--eEEcceeec
Q 015686 303 -FNM--AVIGGNHIR 314 (402)
Q Consensus 303 -lng--~~l~Gr~I~ 314 (402)
|.. ..|.|+.|.
T Consensus 231 ylreevk~fqgKpIm 245 (684)
T KOG2591|consen 231 YLREEVKTFQGKPIM 245 (684)
T ss_pred HHHHHHHhhcCcchh
Confidence 222 245555543
No 206
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=60.23 E-value=4.7 Score=43.66 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=47.3
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.++..+|||+|+-..+..+-++.+...| |.|.++..+. |||..|..+..+.+|+.++
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~----g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~ 93 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKS----GFVPSWKRDK---------FGFCEFLKHIGDLRASRLL 93 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhC----Ccchhhhhhh---------hcccchhhHHHHHHHHHHh
Confidence 4567899999999999999999999888 8787664432 8999999999998888654
No 207
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=59.04 E-value=19 Score=32.07 Aligned_cols=57 Identities=21% Similarity=0.214 Sum_probs=37.4
Q ss_pred cCCcceeEecCCC------CCCCH---HHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLP------FDVKD---EEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp------~~~te---edL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
.++..||.|.=+. ..+.+ .+|.+.|..| |.|.-||++-+ --+|+|.+-..|.+||.+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~----GevvLvRfv~~--------~mwVTF~dg~sALaals~ 89 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQY----GEVVLVRFVGD--------TMWVTFRDGQSALAALSL 89 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCC----S-ECEEEEETT--------CEEEEESSCHHHHHHHHG
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhC----CceEEEEEeCC--------eEEEEECccHHHHHHHcc
Confidence 3455667665544 12222 2566777788 99988888754 469999999999999975
No 208
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=55.97 E-value=7 Score=38.30 Aligned_cols=34 Identities=38% Similarity=0.533 Sum_probs=27.9
Q ss_pred ccEEEEeCCCCcC------------cHHHHHHHhhhcCCeeEEEEe
Q 015686 225 LRTIFVGNLPLKV------------KKKTLIKEFIKFGEIDSVRIR 258 (402)
Q Consensus 225 ~~tVfVgNLP~~v------------tee~L~~~F~~~G~I~~vri~ 258 (402)
+.|||+.+||-.+ +++-|+..|..||.|..|.|+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 4679999998543 578899999999999888873
No 209
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=53.34 E-value=4.8 Score=38.88 Aligned_cols=38 Identities=16% Similarity=0.070 Sum_probs=30.0
Q ss_pred CCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 364 ESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 364 ~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
||.|+.+.|..+.. -.-.|-+||.|...++|.+|+..|
T Consensus 93 ygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~l 130 (260)
T KOG2202|consen 93 YGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDL 130 (260)
T ss_pred hhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHH
Confidence 39999986655422 335788999999999999999865
No 210
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=51.65 E-value=13 Score=28.81 Aligned_cols=58 Identities=19% Similarity=0.312 Sum_probs=32.1
Q ss_pred CcCcHHHHHHHhhhcCCe-----eEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-ccceEE
Q 015686 235 LKVKKKTLIKEFIKFGEI-----DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNMAVI 308 (402)
Q Consensus 235 ~~vtee~L~~~F~~~G~I-----~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-lng~~l 308 (402)
..++..+|..++...+.| -.|+|.. -|+||+-... .+..++. |++..+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~-------------------------~~S~vev~~~-~a~~v~~~l~~~~~ 64 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD-------------------------NFSFVEVPEE-VAEKVLEALNGKKI 64 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S-------------------------S-EEEEE-TT--HHHHHHHHTT--S
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee-------------------------eEEEEEECHH-HHHHHHHHhcCCCC
Confidence 357888999888866434 4555521 3899988754 5677774 999999
Q ss_pred cceeeccccC
Q 015686 309 GGNHIRLDRA 318 (402)
Q Consensus 309 ~Gr~I~V~~a 318 (402)
.|+.|.|..|
T Consensus 65 ~gk~v~ve~A 74 (74)
T PF03880_consen 65 KGKKVRVERA 74 (74)
T ss_dssp SS----EEE-
T ss_pred CCeeEEEEEC
Confidence 9999998754
No 211
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=51.28 E-value=16 Score=36.70 Aligned_cols=61 Identities=21% Similarity=0.360 Sum_probs=44.1
Q ss_pred cceeEecCCCCCCCHHHHHH---HhccCCCCCCCeEEEEEeecCC--CCC-CceEEEEEecCHHHHHHHHH
Q 015686 336 KKTVFVGNLPFDVKDEEIYQ---LFCGLNDLESSVEAVRVIRHPH--MRV-GKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~---~F~~f~~~~G~I~~vrI~~d~~--~g~-skG~aFV~F~s~e~A~~Al~ 400 (402)
.+-+||-+|+..+..+.+.+ .|..| |.|..|.+-+++. .+. .-.-+||+|...++|..||.
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqy----gki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~ 143 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQY----GKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCID 143 (327)
T ss_pred hhhhhhhCCCccccchhhhhCccccccc----ccceEEeecCCcccccCCCCCCcccccccchHhhhhHHH
Confidence 45678888888877666653 66666 9999998888762 111 11128999999999999985
No 212
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=48.90 E-value=31 Score=34.08 Aligned_cols=48 Identities=15% Similarity=0.213 Sum_probs=35.2
Q ss_pred cceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCH
Q 015686 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (402)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~ 392 (402)
..-|+++||+..+.-.||+..+... | ..-++|-. .| +.|-||+.|-+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~----~-~~pm~isw---kg-~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKR----E-CTPMSISW---KG-HFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhc----C-CCceeEee---ec-CCcceeEecCCc
Confidence 4579999999999999999998776 2 22233322 23 578899999764
No 213
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=46.39 E-value=33 Score=29.47 Aligned_cols=48 Identities=19% Similarity=0.256 Sum_probs=31.3
Q ss_pred CCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCH
Q 015686 344 LPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (402)
Q Consensus 344 Lp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~ 392 (402)
-|+.+|..+|+++|..-. .|-.|.+-.|.+|.--.-+-..||..|...
T Consensus 82 ~PYTlT~~e~r~iF~Epm-~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPM-VYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred CceeeeHHHHHHHHhhhh-hhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 378899999999997531 124455555666632222455799988765
No 214
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=45.62 E-value=25 Score=34.60 Aligned_cols=37 Identities=11% Similarity=0.277 Sum_probs=30.2
Q ss_pred CcceeEecCCCCCC------------CHHHHHHHhccCCCCCCCeEEEEEeec
Q 015686 335 IKKTVFVGNLPFDV------------KDEEIYQLFCGLNDLESSVEAVRVIRH 375 (402)
Q Consensus 335 ~~~tLfV~NLp~~~------------teedL~~~F~~f~~~~G~I~~vrI~~d 375 (402)
...|||+.+||-.| +++-|+..|+.| |.|..|.|+..
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eaf----g~ir~vdipic 196 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAF----GEIRNVDIPIC 196 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHh----ccceecCCccc
Confidence 45789999998654 477899999999 99999988763
No 215
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=41.16 E-value=11 Score=42.11 Aligned_cols=70 Identities=19% Similarity=0.146 Sum_probs=53.7
Q ss_pred EEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-ccc
Q 015686 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNM 305 (402)
Q Consensus 227 tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-lng 305 (402)
+.++-|.+-..+---|..+|.+||.|.++|..+. --.|.|.|.+.+.|..|+. ++|
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----------------------~N~alvs~~s~~sai~a~dAl~g 356 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----------------------LNMALVSFSSVESAILALDALQG 356 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc-----------------------ccchhhhhHHHHHHHHhhhhhcC
Confidence 3555566667788899999999999999876432 1379999999999999994 888
Q ss_pred eEE--cceeeccccCC
Q 015686 306 AVI--GGNHIRLDRAC 319 (402)
Q Consensus 306 ~~l--~Gr~I~V~~a~ 319 (402)
..+ -|-+.+|..+.
T Consensus 357 kevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 357 KEVSVTGAPSRVSFAK 372 (1007)
T ss_pred CcccccCCceeEEecc
Confidence 854 56666666654
No 216
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.59 E-value=44 Score=34.53 Aligned_cols=56 Identities=11% Similarity=0.125 Sum_probs=44.7
Q ss_pred cceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
...|-|-|+|.....+||...|+.|+. .=-.|.|+-|. .||-.|.+...|..||-|
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~---kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQN---KGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhc---CCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 468899999999999999999999953 33456666553 589999999999988753
No 217
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.85 E-value=45 Score=35.48 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=46.2
Q ss_pred EEeCCCCcCc---HHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcc-eEEEEEeechhHHHHHhcc
Q 015686 229 FVGNLPLKVK---KKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSV-HAYIVFKSEQSTEAALAFN 304 (402)
Q Consensus 229 fVgNLP~~vt---ee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG-~aFV~F~s~e~A~~Al~ln 304 (402)
+||||+.-.. ...|..+=.+||+|..+++ | .-.|...+.+.|..|+.-|
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~l---------------------------G~~~~Vviss~~~akE~l~~~ 88 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRL---------------------------GSVPVVVISSYEAAKEVLVKQ 88 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEe---------------------------cCceEEEECCHHHHHHHHHhC
Confidence 7899876543 4566666668999998887 2 2578888999999999988
Q ss_pred ceEEcceee
Q 015686 305 MAVIGGNHI 313 (402)
Q Consensus 305 g~~l~Gr~I 313 (402)
+..+.+|..
T Consensus 89 d~~fa~Rp~ 97 (489)
T KOG0156|consen 89 DLEFADRPD 97 (489)
T ss_pred CccccCCCC
Confidence 999999886
No 218
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.96 E-value=49 Score=35.72 Aligned_cols=43 Identities=23% Similarity=0.357 Sum_probs=36.4
Q ss_pred cCCcceeEecCCCCC-CCHHHHHHHhccCCCCCCCeEEEEEeec
Q 015686 333 YDIKKTVFVGNLPFD-VKDEEIYQLFCGLNDLESSVEAVRVIRH 375 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~-~teedL~~~F~~f~~~~G~I~~vrI~~d 375 (402)
...+++|-|-||.+. +...||.-+|..|.+..|.|.+|.|+..
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpS 214 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPS 214 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechh
Confidence 345788999999976 6789999999999887889999998763
No 219
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=32.66 E-value=21 Score=40.12 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=45.0
Q ss_pred eeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 338 tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
+.++.|.+-..+-.-|..+|..| |.|.+++-+++- ..|.|.|.+.+.|..|+++|
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~y----g~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl 354 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDY----GSVASAWTLRDL------NMALVSFSSVESAILALDAL 354 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhh----cchhhheecccc------cchhhhhHHHHHHHHhhhhh
Confidence 33444556667788899999999 999999888873 37999999999999999875
No 220
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=31.13 E-value=51 Score=33.75 Aligned_cols=70 Identities=21% Similarity=0.260 Sum_probs=46.2
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeec-ccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVP-IIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~-~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
...|-|.+||+..++.+|.+....|-. .+.|.... ...+..+. -.+.|||-|.+.+++..-..
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~--~v~~~~F~~a~~s~~~~-------------~ysrayinFk~~~dv~ef~~~ 71 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPE--HVNWEFFAKADESLRNH-------------KYSRAYINFKNPEDVEEFRRR 71 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCcc--ccchheeccccccchhh-------------hhhhhhhccccHHHHHHHHhh
Confidence 467999999999999999988877532 22222111 10111111 14789999999999766664
Q ss_pred ccceEEc
Q 015686 303 FNMAVIG 309 (402)
Q Consensus 303 lng~~l~ 309 (402)
++|++|.
T Consensus 72 f~g~ifl 78 (376)
T KOG1295|consen 72 FDGYIFL 78 (376)
T ss_pred CCceEEe
Confidence 8888763
No 221
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=28.75 E-value=61 Score=27.62 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=26.1
Q ss_pred eeEecCCCCCC---------CHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCH
Q 015686 338 TVFVGNLPFDV---------KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (402)
Q Consensus 338 tLfV~NLp~~~---------teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~ 392 (402)
++.|.|++... +...|.+.|..| ..+ .|+.+.+.. -+.|+++|.|..-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f----~p~-kv~~l~~~~--gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEF----NPL-KVKPLYGKQ--GHTGFAIVEFNKD 66 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH-------S-EEEEEEETT--EEEEEEEEE--SS
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhc----CCc-eeEECcCCC--CCcEEEEEEECCC
Confidence 45666665433 457899999999 333 455555533 3789999999764
No 222
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=28.74 E-value=30 Score=35.67 Aligned_cols=62 Identities=15% Similarity=0.100 Sum_probs=49.2
Q ss_pred cceeEecCCCCCCCH--------HHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHH
Q 015686 336 KKTVFVGNLPFDVKD--------EEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLR 399 (402)
Q Consensus 336 ~~tLfV~NLp~~~te--------edL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al 399 (402)
.+.+|+.+++..... +++...|..... +.+..|+.-++-....++|..|++|.....|++.+
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h--~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYH--APPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCccc--CChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 467888887766554 489999987311 78888888888656778999999999999999887
No 223
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=26.63 E-value=78 Score=26.95 Aligned_cols=59 Identities=17% Similarity=0.309 Sum_probs=30.6
Q ss_pred EEEEeCCCCc---------CcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechh-
Q 015686 227 TIFVGNLPLK---------VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQS- 296 (402)
Q Consensus 227 tVfVgNLP~~---------vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~- 296 (402)
++.|-|+|.. ++-+.|...|+.|.++. ++....+ . | ++|++.|.|...-+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~----~----g-----------h~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK----Q----G-----------HTGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET----T----E-----------EEEEEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC----C----C-----------CcEEEEEEECCChHH
Confidence 4667777553 35689999999999874 4432211 1 1 46899999998654
Q ss_pred HHHHHhccc
Q 015686 297 TEAALAFNM 305 (402)
Q Consensus 297 A~~Al~lng 305 (402)
...|++|+.
T Consensus 70 f~~A~~l~~ 78 (116)
T PF03468_consen 70 FKNAMRLEK 78 (116)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455665443
No 224
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=23.95 E-value=1.5e+02 Score=22.59 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=14.9
Q ss_pred HHHHHHHhhhcCCeeEEEE
Q 015686 239 KKTLIKEFIKFGEIDSVRI 257 (402)
Q Consensus 239 ee~L~~~F~~~G~I~~vri 257 (402)
..+|+.+|+..|.|.-+-+
T Consensus 8 ~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCcEEEEEE
Confidence 3689999999999864443
No 225
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=23.03 E-value=1.7e+02 Score=29.29 Aligned_cols=53 Identities=13% Similarity=0.016 Sum_probs=38.8
Q ss_pred ceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHH
Q 015686 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~ 400 (402)
.=|-|-++|+. .-.-|..+|..| |.|....-. . .-.+-+|.|.+.-+|.+||.
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~c----G~Vvkhv~~---~---ngNwMhirYssr~~A~KALs 250 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRC----GEVVKHVTP---S---NGNWMHIRYSSRTHAQKALS 250 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhh----CeeeeeecC---C---CCceEEEEecchhHHHHhhh
Confidence 34566677763 456678899999 888775332 2 23488999999999999985
No 226
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=23.00 E-value=69 Score=30.86 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=29.2
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEE
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRI 257 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri 257 (402)
..+++|+-|||...|++.|..+.+++|.+..+.+
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 3678999999999999999999999997665543
No 227
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=22.05 E-value=1.5e+02 Score=29.48 Aligned_cols=59 Identities=10% Similarity=0.138 Sum_probs=46.8
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCC-------CCCCceEEEEEecCHHHHHH
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPH-------MRVGKGIAYVLFKTRLPIWL 397 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~-------~g~skG~aFV~F~s~e~A~~ 397 (402)
..|.|.+.||...++-..+...|..| |.|++|.++.+.. ......-..+.|-+.+.|..
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~----~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLd 79 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKF----GPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLD 79 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhcc----CceeEEEEecCCCcccccccccccceEEEEeeechHHHHH
Confidence 36889999999999999999999999 9999999988741 11234567888988887754
No 228
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=22.03 E-value=2.9e+02 Score=21.18 Aligned_cols=42 Identities=14% Similarity=0.159 Sum_probs=31.6
Q ss_pred CCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 347 DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 347 ~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
.++-++|+..+..| ... +|.-| . .| =||.|.+..+|.+|..+
T Consensus 11 ~~~v~d~K~~Lr~y-----~~~--~I~~d-~----tG-fYIvF~~~~Ea~rC~~~ 52 (66)
T PF11767_consen 11 GVTVEDFKKRLRKY-----RWD--RIRDD-R----TG-FYIVFNDSKEAERCFRA 52 (66)
T ss_pred CccHHHHHHHHhcC-----Ccc--eEEec-C----CE-EEEEECChHHHHHHHHh
Confidence 36789999999999 334 44444 2 23 39999999999999875
No 229
>PF14893 PNMA: PNMA
Probab=21.45 E-value=79 Score=32.00 Aligned_cols=33 Identities=12% Similarity=0.307 Sum_probs=24.6
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhh-cCCeeEEEE
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIK-FGEIDSVRI 257 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~-~G~I~~vri 257 (402)
.+.|.|.+||.++++.+|.+.+.. +-++-..++
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrv 51 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAALSPLGRYRV 51 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHhhccccccee
Confidence 577999999999999999988763 333334444
Done!