Query 015686
Match_columns 402
No_of_seqs 352 out of 2182
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 16:55:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015686.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015686hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 4.7E-30 1.6E-34 232.0 18.8 156 222-401 10-165 (196)
2 3md3_A Nuclear and cytoplasmic 100.0 1.3E-29 4.5E-34 222.1 16.9 148 226-402 1-149 (166)
3 1fxl_A Paraneoplastic encephal 100.0 7.1E-29 2.4E-33 217.7 17.7 148 225-402 2-150 (167)
4 1b7f_A Protein (SXL-lethal pro 100.0 5.9E-29 2E-33 219.1 17.1 148 225-402 3-151 (168)
5 2cjk_A Nuclear polyadenylated 100.0 4.5E-29 1.5E-33 219.9 14.2 147 224-401 2-148 (167)
6 4f02_A Polyadenylate-binding p 100.0 9.2E-29 3.1E-33 229.1 15.3 148 225-402 15-163 (213)
7 2g4b_A Splicing factor U2AF 65 100.0 2.5E-28 8.6E-33 216.1 16.7 143 224-402 3-156 (172)
8 3nmr_A Cugbp ELAV-like family 100.0 2.2E-28 7.4E-33 216.5 15.4 150 225-402 3-156 (175)
9 2yh0_A Splicing factor U2AF 65 100.0 6.3E-28 2.2E-32 218.3 17.9 152 224-402 3-176 (198)
10 2qfj_A FBP-interacting repress 100.0 1.8E-28 6.1E-33 224.9 13.5 157 225-402 28-187 (216)
11 3tyt_A Heterogeneous nuclear r 99.9 1.9E-27 6.3E-32 220.4 14.7 150 225-402 4-185 (205)
12 3sde_A Paraspeckle component 1 99.9 4.4E-27 1.5E-31 224.5 16.9 138 222-402 19-157 (261)
13 1fje_B Nucleolin RBD12, protei 99.9 1.5E-27 5.2E-32 212.3 11.5 147 222-402 10-156 (175)
14 2ghp_A U4/U6 snRNA-associated 99.9 1.5E-26 5.2E-31 222.8 14.1 139 223-401 39-178 (292)
15 3smz_A Protein raver-1, ribonu 99.9 5.2E-26 1.8E-30 218.2 17.0 134 225-401 22-156 (284)
16 3smz_A Protein raver-1, ribonu 99.9 2.1E-25 7.1E-30 214.0 17.2 150 225-402 95-246 (284)
17 2ghp_A U4/U6 snRNA-associated 99.9 1.1E-25 3.7E-30 216.8 14.0 154 224-402 116-273 (292)
18 3pgw_A U1-A; protein-RNA compl 99.9 4.2E-25 1.4E-29 211.7 17.9 152 222-402 6-264 (282)
19 2adc_A Polypyrimidine tract-bi 99.9 5E-25 1.7E-29 206.2 16.2 149 223-402 32-209 (229)
20 1qm9_A Polypyrimidine tract-bi 99.9 2.3E-25 8E-30 202.4 12.4 147 225-402 3-178 (198)
21 4f25_A Polyadenylate-binding p 99.8 8.1E-21 2.8E-25 159.6 8.7 108 225-352 5-113 (115)
22 2kn4_A Immunoglobulin G-bindin 99.7 2.6E-18 9E-23 151.1 9.5 113 283-402 12-132 (158)
23 4fxv_A ELAV-like protein 1; RN 99.7 4.4E-17 1.5E-21 133.5 8.9 79 225-320 19-98 (99)
24 2hvz_A Splicing factor, argini 99.7 3.2E-17 1.1E-21 133.7 7.4 98 226-345 1-100 (101)
25 3lqv_A PRE-mRNA branch site pr 99.7 2.1E-17 7.3E-22 137.9 5.8 100 224-360 7-107 (115)
26 2i2y_A Fusion protein consists 99.7 4.9E-17 1.7E-21 142.2 7.0 109 283-401 12-129 (150)
27 2lxi_A RNA-binding protein 10; 99.7 8.8E-17 3E-21 129.6 6.8 81 225-322 1-84 (91)
28 3s7r_A Heterogeneous nuclear r 99.6 5.5E-16 1.9E-20 122.7 9.8 79 223-318 9-87 (87)
29 3s8s_A Histone-lysine N-methyl 99.6 3.4E-16 1.2E-20 130.8 8.9 81 224-321 5-86 (110)
30 2dgs_A DAZ-associated protein 99.6 6.7E-16 2.3E-20 125.3 10.2 84 223-323 8-91 (99)
31 1whw_A Hypothetical protein ri 99.6 1E-15 3.4E-20 124.2 10.4 84 223-323 6-90 (99)
32 2fy1_A RNA-binding motif prote 99.6 6.2E-16 2.1E-20 130.1 9.4 83 224-324 6-89 (116)
33 3ucg_A Polyadenylate-binding p 99.6 7.4E-16 2.5E-20 122.2 9.3 79 225-320 6-84 (89)
34 1x5u_A Splicing factor 3B subu 99.6 9.2E-16 3.1E-20 125.7 9.9 85 222-323 12-97 (105)
35 1sjq_A Polypyrimidine tract-bi 99.6 8E-16 2.7E-20 127.9 9.5 77 223-322 14-93 (105)
36 3md1_A Nuclear and cytoplasmic 99.6 8.7E-16 3E-20 120.2 9.1 79 226-321 2-81 (83)
37 1s79_A Lupus LA protein; RRM, 99.6 3.4E-16 1.2E-20 129.4 7.0 78 224-319 10-87 (103)
38 4a8x_A RNA-binding protein wit 99.6 5.1E-16 1.7E-20 122.8 7.6 81 225-321 4-85 (88)
39 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.7E-15 5.8E-20 123.8 10.9 82 223-323 13-95 (103)
40 3bs9_A Nucleolysin TIA-1 isofo 99.6 6.2E-16 2.1E-20 122.1 8.0 80 224-320 5-85 (87)
41 3mdf_A Peptidyl-prolyl CIS-tra 99.6 7.5E-16 2.6E-20 121.1 8.4 78 224-318 6-84 (85)
42 2dnm_A SRP46 splicing factor; 99.6 1.2E-15 4.2E-20 124.7 9.8 83 223-322 11-94 (103)
43 2x1f_A MRNA 3'-END-processing 99.6 1E-15 3.4E-20 123.7 9.1 81 225-322 2-83 (96)
44 1wi8_A EIF-4B, eukaryotic tran 99.6 2E-15 6.9E-20 123.7 10.8 84 224-324 14-97 (104)
45 2cq3_A RNA-binding protein 9; 99.6 2.5E-15 8.7E-20 122.8 11.3 82 222-322 12-94 (103)
46 2e5h_A Zinc finger CCHC-type a 99.6 1.5E-15 5.2E-20 121.8 9.7 79 223-318 14-93 (94)
47 1x5t_A Splicing factor 3B subu 99.6 1.2E-15 3.9E-20 123.0 9.1 82 224-322 4-87 (96)
48 2do4_A Squamous cell carcinoma 99.6 1.4E-15 4.7E-20 123.7 9.4 81 223-321 15-96 (100)
49 2cqb_A Peptidyl-prolyl CIS-tra 99.6 1.1E-15 3.9E-20 124.5 8.8 85 223-324 10-95 (102)
50 3p5t_L Cleavage and polyadenyl 99.6 2.4E-16 8.1E-21 126.2 4.6 79 226-321 2-83 (90)
51 2dnz_A Probable RNA-binding pr 99.6 1.7E-15 5.8E-20 121.7 9.6 82 224-322 4-86 (95)
52 2cqc_A Arginine/serine-rich sp 99.6 1.9E-15 6.7E-20 121.2 9.9 81 222-319 12-93 (95)
53 2cq0_A Eukaryotic translation 99.6 1.4E-15 4.7E-20 124.4 9.1 84 222-322 12-96 (103)
54 2dgo_A Cytotoxic granule-assoc 99.6 3.7E-15 1.3E-19 124.2 11.9 85 222-323 12-97 (115)
55 1x4h_A RNA-binding protein 28; 99.6 2.2E-15 7.6E-20 124.5 10.5 84 222-322 12-102 (111)
56 2lkz_A RNA-binding protein 5; 99.6 7E-16 2.4E-20 125.8 7.3 79 224-319 8-93 (95)
57 1x4a_A Splicing factor, argini 99.6 2.7E-15 9.1E-20 124.0 10.8 80 223-322 20-100 (109)
58 2cpf_A RNA binding motif prote 99.6 1.8E-15 6.3E-20 122.4 9.6 85 224-322 4-89 (98)
59 2dh8_A DAZ-associated protein 99.6 2.6E-15 9E-20 123.1 10.6 84 223-323 14-97 (105)
60 2rs2_A Musashi-1, RNA-binding 99.6 2E-15 6.8E-20 125.5 9.8 85 221-322 21-105 (109)
61 2dng_A Eukaryotic translation 99.6 3.6E-15 1.2E-19 122.0 11.1 82 223-322 13-94 (103)
62 2dgx_A KIAA0430 protein; RRM d 99.6 2.9E-15 1E-19 121.3 10.5 79 223-321 7-90 (96)
63 2ywk_A Putative RNA-binding pr 99.6 2.3E-15 7.9E-20 120.9 9.7 79 223-319 14-93 (95)
64 2mss_A Protein (musashi1); RNA 99.6 5.4E-16 1.8E-20 119.4 5.7 75 227-318 1-75 (75)
65 2cq4_A RNA binding motif prote 99.6 1.3E-15 4.6E-20 126.8 8.5 81 224-321 24-104 (114)
66 1x5s_A Cold-inducible RNA-bind 99.6 1.3E-15 4.4E-20 124.2 8.0 83 223-322 10-93 (102)
67 2cph_A RNA binding motif prote 99.6 2.2E-15 7.7E-20 123.6 9.5 84 223-322 13-98 (107)
68 2cpz_A CUG triplet repeat RNA- 99.6 2E-15 6.9E-20 125.9 9.3 82 224-322 24-106 (115)
69 2dgv_A HnRNP M, heterogeneous 99.6 1.8E-15 6.2E-20 120.9 8.7 81 223-322 6-87 (92)
70 2khc_A Testis-specific RNP-typ 99.6 2.8E-15 9.5E-20 125.5 10.2 80 222-318 37-117 (118)
71 3ns6_A Eukaryotic translation 99.6 5.6E-16 1.9E-20 126.8 5.7 81 224-321 5-93 (100)
72 2ytc_A PRE-mRNA-splicing facto 99.6 2.5E-15 8.4E-20 118.3 9.1 73 223-318 10-84 (85)
73 3r27_A HnRNP L, heterogeneous 99.6 1.7E-15 5.8E-20 124.8 8.3 76 223-321 19-97 (100)
74 2la4_A Nuclear and cytoplasmic 99.6 2.1E-15 7.2E-20 122.8 8.8 74 224-320 26-100 (101)
75 2nlw_A Eukaryotic translation 99.6 3.3E-15 1.1E-19 123.1 10.1 80 222-320 12-99 (105)
76 1oo0_B CG8781-PA, drosophila Y 99.6 2.2E-15 7.5E-20 124.6 9.0 82 223-321 24-106 (110)
77 2d9p_A Polyadenylate-binding p 99.6 1.9E-15 6.6E-20 123.5 8.5 82 223-323 13-95 (103)
78 1p27_B RNA-binding protein 8A; 99.6 1.4E-15 4.8E-20 124.8 7.5 80 224-320 22-102 (106)
79 1x4b_A Heterogeneous nuclear r 99.6 2.3E-15 7.7E-20 125.8 8.9 82 225-323 27-108 (116)
80 2cqd_A RNA-binding region cont 99.6 5.2E-15 1.8E-19 123.6 11.1 82 222-321 14-96 (116)
81 2dnp_A RNA-binding protein 14; 99.6 3.9E-15 1.3E-19 118.8 9.8 76 222-322 6-82 (90)
82 2cpe_A RNA-binding protein EWS 99.6 2.9E-15 9.9E-20 124.4 9.4 85 222-323 12-105 (113)
83 2db1_A Heterogeneous nuclear r 99.6 1.3E-15 4.6E-20 128.4 7.2 80 223-320 15-97 (118)
84 2cpi_A CCR4-NOT transcription 99.6 1.3E-15 4.3E-20 126.9 7.0 85 224-322 14-102 (111)
85 2div_A TRNA selenocysteine ass 99.6 3E-15 1E-19 121.3 9.0 82 223-321 7-94 (99)
86 2cpd_A Apobec-1 stimulating pr 99.6 7.6E-15 2.6E-19 119.2 11.4 75 223-322 13-90 (99)
87 2dgt_A RNA-binding protein 30; 99.6 5.8E-15 2E-19 118.3 10.5 76 222-322 7-83 (92)
88 2dnq_A RNA-binding protein 4B; 99.6 3.5E-15 1.2E-19 119.1 9.1 76 223-323 6-82 (90)
89 1x4d_A Matrin 3; structural ge 99.6 1.9E-15 6.6E-20 124.9 7.8 75 224-321 14-92 (102)
90 2dhg_A TRNA selenocysteine ass 99.6 4.9E-15 1.7E-19 121.1 10.1 83 223-323 7-92 (104)
91 1x4e_A RNA binding motif, sing 99.6 1.5E-15 5.1E-20 119.7 6.7 79 224-319 4-83 (85)
92 2dgp_A Bruno-like 4, RNA bindi 99.6 3E-15 1E-19 122.8 8.7 85 222-323 10-98 (106)
93 2dnh_A Bruno-like 5, RNA bindi 99.6 3.1E-15 1E-19 122.6 8.8 81 224-322 14-98 (105)
94 2cpj_A Non-POU domain-containi 99.6 3.1E-15 1.1E-19 121.5 8.7 77 223-322 13-90 (99)
95 2cpy_A RNA-binding protein 12; 99.6 1.9E-15 6.5E-20 126.4 7.6 82 222-321 12-94 (114)
96 2do0_A HnRNP M, heterogeneous 99.6 3.9E-15 1.3E-19 123.7 9.5 81 223-321 13-94 (114)
97 2jrs_A RNA-binding protein 39; 99.6 2E-15 6.9E-20 125.3 7.7 83 222-321 23-106 (108)
98 2err_A Ataxin-2-binding protei 99.6 3.2E-15 1.1E-19 124.1 8.7 81 222-321 26-107 (109)
99 2wbr_A GW182, gawky, LD47780P; 99.6 2.6E-15 9E-20 120.6 7.7 72 225-319 7-79 (89)
100 2la6_A RNA-binding protein FUS 99.6 2.5E-15 8.6E-20 122.1 7.7 81 221-318 9-98 (99)
101 1x4g_A Nucleolysin TIAR; struc 99.6 6.2E-15 2.1E-19 121.9 10.2 76 224-322 24-100 (109)
102 2xnq_A Nuclear polyadenylated 99.6 4.8E-15 1.6E-19 120.6 9.3 73 223-320 20-94 (97)
103 1wex_A Hypothetical protein (r 99.6 3.7E-15 1.3E-19 123.4 8.7 78 223-323 13-93 (104)
104 2krb_A Eukaryotic translation 99.6 2.5E-15 8.6E-20 117.7 7.2 72 226-316 2-81 (81)
105 1wg5_A Heterogeneous nuclear r 99.6 4.2E-15 1.4E-19 122.3 8.8 81 223-321 13-94 (104)
106 2jvr_A Nucleolar protein 3; RN 99.6 2.6E-15 9E-20 125.9 7.7 80 221-321 24-105 (111)
107 1iqt_A AUF1, heterogeneous nuc 99.6 1.3E-15 4.5E-20 117.0 5.4 75 227-318 1-75 (75)
108 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.6E-15 5.4E-20 123.8 6.2 82 223-321 17-98 (100)
109 3ulh_A THO complex subunit 4; 99.6 4.8E-15 1.6E-19 121.8 8.8 79 223-319 27-106 (107)
110 2cq1_A PTB-like protein L; RRM 99.6 7.4E-15 2.5E-19 121.1 9.9 77 224-323 14-93 (101)
111 2e5j_A Methenyltetrahydrofolat 99.6 3.1E-15 1.1E-19 121.2 7.3 77 223-321 17-94 (97)
112 2cqg_A TDP-43, TAR DNA-binding 99.6 1.6E-14 5.5E-19 118.0 11.5 82 223-322 13-94 (103)
113 2kxn_B Transformer-2 protein h 99.6 4.1E-15 1.4E-19 127.6 8.2 83 222-321 43-126 (129)
114 2ad9_A Polypyrimidine tract-bi 99.6 3.5E-15 1.2E-19 126.7 7.7 77 224-323 30-109 (119)
115 2dgu_A Heterogeneous nuclear r 99.6 9.8E-15 3.3E-19 119.5 9.9 75 224-323 10-85 (103)
116 2dgw_A Probable RNA-binding pr 99.6 6.8E-15 2.3E-19 117.5 8.7 80 223-321 8-87 (91)
117 3n9u_C Cleavage and polyadenyl 99.6 4.8E-15 1.6E-19 131.4 8.6 80 225-321 55-137 (156)
118 2dnn_A RNA-binding protein 12; 99.6 3.9E-15 1.3E-19 124.4 7.5 77 225-320 16-92 (109)
119 2hzc_A Splicing factor U2AF 65 99.6 9E-15 3.1E-19 115.4 9.2 71 224-317 5-86 (87)
120 2hgl_A HNRPF protein, heteroge 99.6 2.6E-15 8.8E-20 130.4 6.5 80 223-320 42-124 (136)
121 1p1t_A Cleavage stimulation fa 99.6 1.8E-15 6.1E-20 123.6 5.1 81 225-322 8-89 (104)
122 1wez_A HnRNP H', FTP-3, hetero 99.6 3E-15 1E-19 123.2 6.4 81 222-321 12-92 (102)
123 2lxi_A RNA-binding protein 10; 99.6 1.7E-15 5.7E-20 122.0 4.8 63 336-402 1-64 (91)
124 1why_A Hypothetical protein ri 99.6 5E-15 1.7E-19 119.8 7.6 75 224-321 16-93 (97)
125 1u6f_A Tcubp1, RNA-binding pro 99.6 7.3E-15 2.5E-19 126.4 9.0 85 221-322 38-123 (139)
126 2m2b_A RNA-binding protein 10; 99.6 4.5E-15 1.5E-19 127.1 7.6 83 223-323 21-110 (131)
127 2jwn_A Embryonic polyadenylate 99.6 6.2E-15 2.1E-19 124.4 8.3 80 225-321 36-115 (124)
128 2lmi_A GRSF-1, G-rich sequence 99.6 2.4E-15 8.3E-20 124.3 5.6 82 222-321 8-92 (107)
129 3ex7_B RNA-binding protein 8A; 99.6 4.8E-15 1.6E-19 125.5 7.6 83 222-321 19-102 (126)
130 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.3E-14 4.5E-19 124.4 10.2 80 222-318 60-140 (140)
131 2cqp_A RNA-binding protein 12; 99.6 4.6E-15 1.6E-19 120.0 6.9 81 224-321 14-95 (98)
132 2ki2_A SS-DNA binding protein 99.6 2.2E-15 7.4E-20 120.0 4.8 78 226-321 2-80 (90)
133 2a3j_A U1 small nuclear ribonu 99.6 7.7E-15 2.6E-19 125.9 8.4 78 224-321 28-110 (127)
134 1wf1_A RNA-binding protein RAL 99.6 1.4E-14 4.7E-19 120.0 9.7 74 224-322 26-101 (110)
135 1fj7_A Nucleolin RBD1, protein 99.6 1.6E-15 5.4E-20 123.6 3.9 81 223-321 15-95 (101)
136 4fxv_A ELAV-like protein 1; RN 99.6 1E-14 3.4E-19 119.4 8.7 65 334-402 17-81 (99)
137 1x4c_A Splicing factor, argini 99.5 1.7E-14 5.9E-19 119.3 10.2 76 223-322 13-94 (108)
138 2ek1_A RNA-binding protein 12; 99.5 3.7E-15 1.3E-19 119.7 5.9 78 225-319 15-93 (95)
139 1uaw_A Mouse-musashi-1; RNP-ty 99.5 2.9E-15 1E-19 115.5 5.1 75 226-318 1-76 (77)
140 2kvi_A Nuclear polyadenylated 99.5 3.3E-15 1.1E-19 120.9 5.7 73 224-321 9-83 (96)
141 1whx_A Hypothetical protein ri 99.5 3E-15 1E-19 124.9 5.5 72 225-319 10-82 (111)
142 1nu4_A U1A RNA binding domain; 99.5 5.6E-15 1.9E-19 119.1 6.8 78 224-321 7-89 (97)
143 2dis_A Unnamed protein product 99.5 1.5E-14 5.3E-19 119.1 9.6 83 224-322 7-93 (109)
144 2jvo_A Nucleolar protein 3; nu 99.5 1.2E-14 4E-19 120.8 8.3 76 222-322 28-104 (108)
145 2kn4_A Immunoglobulin G-bindin 99.5 1.6E-14 5.5E-19 126.8 9.7 83 223-322 68-151 (158)
146 2xs2_A Deleted in azoospermia- 99.5 9.5E-15 3.3E-19 119.1 7.5 78 224-320 8-85 (102)
147 1x4f_A Matrin 3; structural ge 99.5 4.5E-15 1.5E-19 124.8 5.5 76 223-321 23-102 (112)
148 2cqh_A IGF-II mRNA-binding pro 99.5 1E-14 3.4E-19 117.0 6.9 75 224-322 7-84 (93)
149 2kt5_A RNA and export factor-b 99.5 1.9E-14 6.6E-19 121.6 8.9 81 223-321 33-114 (124)
150 2lkz_A RNA-binding protein 5; 99.5 6.6E-15 2.3E-19 120.0 5.7 65 334-402 7-73 (95)
151 1h2v_Z 20 kDa nuclear CAP bind 99.5 2.4E-14 8.1E-19 125.8 9.7 82 224-322 38-120 (156)
152 2fc9_A NCL protein; structure 99.5 2.6E-14 9E-19 116.3 9.1 80 222-322 12-92 (101)
153 1wel_A RNA-binding protein 12; 99.5 4.3E-15 1.5E-19 125.9 4.5 80 224-320 24-103 (124)
154 2cpx_A Hypothetical protein FL 99.5 1.6E-14 5.3E-19 120.2 7.8 83 224-323 24-107 (115)
155 3s8s_A Histone-lysine N-methyl 99.5 2.5E-14 8.5E-19 119.4 8.8 65 334-402 4-68 (110)
156 2dha_A FLJ20171 protein; RRM d 99.5 7.7E-15 2.6E-19 125.3 5.7 78 225-320 23-104 (123)
157 2lea_A Serine/arginine-rich sp 99.5 1.1E-14 3.7E-19 125.8 6.5 82 224-322 46-128 (135)
158 1rk8_A CG8781-PA, CG8781-PA pr 99.5 2E-14 6.8E-19 127.9 8.3 82 223-321 70-152 (165)
159 2i2y_A Fusion protein consists 99.5 1.6E-14 5.6E-19 126.1 7.5 78 222-321 70-148 (150)
160 1x5o_A RNA binding motif, sing 99.5 2.8E-14 9.5E-19 118.7 8.5 79 224-320 24-111 (114)
161 3d2w_A TAR DNA-binding protein 99.5 2.4E-14 8.2E-19 114.8 7.8 77 223-322 9-85 (89)
162 2e5g_A U6 snRNA-specific termi 99.5 1.3E-13 4.4E-18 110.9 11.8 76 225-322 8-83 (94)
163 2lea_A Serine/arginine-rich sp 99.5 1.4E-14 4.6E-19 125.2 6.3 104 285-402 5-109 (135)
164 1x5p_A Negative elongation fac 99.5 9.3E-14 3.2E-18 112.4 10.9 74 224-322 14-88 (97)
165 2hgm_A HNRPF protein, heteroge 99.5 3.1E-14 1E-18 122.1 8.4 79 223-320 40-120 (126)
166 1fjc_A Nucleolin RBD2, protein 99.5 2.1E-14 7.1E-19 115.7 6.9 77 223-321 14-91 (96)
167 3s7r_A Heterogeneous nuclear r 99.5 6E-14 2.1E-18 110.9 9.1 65 333-401 8-72 (87)
168 3pgw_S U1-70K; protein-RNA com 99.5 1.2E-14 4.1E-19 149.0 5.9 65 334-402 100-164 (437)
169 2lcw_A RNA-binding protein FUS 99.2 2.1E-15 7.3E-20 126.1 0.0 84 224-324 6-98 (116)
170 3egn_A RNA-binding protein 40; 99.5 3.2E-14 1.1E-18 123.2 7.4 78 224-321 44-130 (143)
171 2e44_A Insulin-like growth fac 99.5 4.3E-14 1.5E-18 113.8 7.5 76 225-321 15-92 (96)
172 3q2s_C Cleavage and polyadenyl 99.5 3.2E-14 1.1E-18 133.6 7.7 81 224-321 67-150 (229)
173 2hgn_A Heterogeneous nuclear r 99.5 1.3E-14 4.3E-19 126.5 4.4 80 224-322 45-124 (139)
174 1wg1_A KIAA1579 protein, homol 99.5 2.9E-14 1E-18 113.4 6.2 72 224-319 4-76 (88)
175 2dgs_A DAZ-associated protein 99.5 1.7E-13 5.7E-18 111.1 10.1 65 333-401 7-71 (99)
176 3p5t_L Cleavage and polyadenyl 99.5 4.2E-14 1.4E-18 113.0 6.5 62 337-402 2-65 (90)
177 1wf0_A TDP-43, TAR DNA-binding 99.5 5.7E-14 1.9E-18 111.5 7.2 77 224-323 4-80 (88)
178 1x4e_A RNA binding motif, sing 99.5 8E-14 2.7E-18 109.7 7.8 65 334-402 3-67 (85)
179 1s79_A Lupus LA protein; RRM, 99.5 1.1E-13 3.7E-18 114.2 8.9 63 334-401 9-71 (103)
180 2div_A TRNA selenocysteine ass 99.5 1.4E-13 4.9E-18 111.3 9.3 66 333-402 6-72 (99)
181 3bs9_A Nucleolysin TIA-1 isofo 99.5 1.2E-13 4E-18 109.0 8.5 64 334-401 4-67 (87)
182 2cqc_A Arginine/serine-rich sp 99.5 1.8E-13 6.2E-18 109.6 9.1 66 333-402 12-77 (95)
183 3md1_A Nuclear and cytoplasmic 99.5 1.6E-13 5.6E-18 107.1 8.6 61 337-401 2-62 (83)
184 1whw_A Hypothetical protein ri 99.5 1.8E-13 6.2E-18 110.7 9.1 66 333-402 5-70 (99)
185 3mdf_A Peptidyl-prolyl CIS-tra 99.5 1E-13 3.6E-18 108.7 7.5 64 334-401 5-68 (85)
186 2dhg_A TRNA selenocysteine ass 99.5 2.3E-13 7.9E-18 111.1 9.8 65 333-402 6-71 (104)
187 2x1f_A MRNA 3'-END-processing 99.5 1.2E-13 4.1E-18 111.4 7.8 63 335-401 1-63 (96)
188 1rk8_A CG8781-PA, CG8781-PA pr 99.5 1.4E-13 4.9E-18 122.3 9.0 110 289-402 11-134 (165)
189 2e5h_A Zinc finger CCHC-type a 99.5 2.2E-13 7.7E-18 109.0 9.3 66 333-402 13-78 (94)
190 1x4h_A RNA-binding protein 28; 99.5 1.3E-13 4.6E-18 113.7 8.2 66 333-402 12-77 (111)
191 2dnz_A Probable RNA-binding pr 99.5 2E-13 6.7E-18 109.6 8.8 64 334-401 3-66 (95)
192 2fc8_A NCL protein; structure 99.4 1.5E-13 5E-18 111.9 8.1 81 223-323 13-94 (102)
193 2cq2_A Hypothetical protein LO 99.4 8.2E-14 2.8E-18 117.4 6.7 73 224-319 24-104 (114)
194 3ns6_A Eukaryotic translation 99.4 4.2E-14 1.4E-18 115.5 4.7 64 335-402 5-74 (100)
195 2dgo_A Cytotoxic granule-assoc 99.4 3.2E-13 1.1E-17 112.3 10.2 66 333-402 12-77 (115)
196 2rs2_A Musashi-1, RNA-binding 99.4 1.6E-13 5.4E-18 113.9 8.2 66 333-402 22-87 (109)
197 1uaw_A Mouse-musashi-1; RNP-ty 99.4 7.5E-14 2.5E-18 107.5 5.7 62 337-402 1-62 (77)
198 2cq0_A Eukaryotic translation 99.4 2.6E-13 8.9E-18 110.7 9.3 66 333-402 12-77 (103)
199 1x5s_A Cold-inducible RNA-bind 99.4 1.8E-13 6.1E-18 111.4 7.9 66 332-401 8-73 (102)
200 1x5u_A Splicing factor 3B subu 99.4 2.3E-13 7.7E-18 111.3 8.5 66 333-402 12-77 (105)
201 2la6_A RNA-binding protein FUS 99.4 2.4E-13 8.4E-18 110.2 8.7 65 333-401 10-82 (99)
202 2cjk_A Nuclear polyadenylated 99.4 8.9E-14 3E-18 121.7 6.5 80 225-321 87-166 (167)
203 2dgp_A Bruno-like 4, RNA bindi 99.4 1.5E-13 5.1E-18 112.6 7.4 66 333-402 10-75 (106)
204 2dnh_A Bruno-like 5, RNA bindi 99.4 3.3E-13 1.1E-17 110.4 9.4 65 333-402 12-76 (105)
205 2cqd_A RNA-binding region cont 99.4 2.9E-13 1E-17 112.9 9.2 66 333-402 14-79 (116)
206 2dnm_A SRP46 splicing factor; 99.4 1.4E-13 4.9E-18 112.3 7.1 66 332-401 9-74 (103)
207 1x5t_A Splicing factor 3B subu 99.4 1.6E-13 5.5E-18 110.3 7.3 65 334-402 3-68 (96)
208 1p27_B RNA-binding protein 8A; 99.4 3E-13 1E-17 110.8 8.7 65 333-401 20-84 (106)
209 2cqb_A Peptidyl-prolyl CIS-tra 99.4 1.6E-13 5.4E-18 111.7 6.7 66 333-402 9-74 (102)
210 2voo_A Lupus LA protein; RNA-b 99.4 2.3E-13 7.8E-18 124.5 8.6 78 225-320 109-186 (193)
211 2cqg_A TDP-43, TAR DNA-binding 99.4 4.6E-13 1.6E-17 109.2 9.5 65 333-401 12-76 (103)
212 2f3j_A RNA and export factor b 99.4 2.1E-13 7E-18 123.2 8.1 81 223-321 86-167 (177)
213 2cpf_A RNA binding motif prote 99.4 2.5E-13 8.6E-18 109.7 7.7 65 334-402 3-70 (98)
214 3n9u_C Cleavage and polyadenyl 99.4 3E-13 1E-17 119.8 8.9 64 335-402 54-119 (156)
215 2cph_A RNA binding motif prote 99.4 3E-13 1E-17 110.9 8.2 66 333-402 12-78 (107)
216 3md3_A Nuclear and cytoplasmic 99.4 4.9E-13 1.7E-17 116.3 10.0 80 223-319 85-165 (166)
217 2do4_A Squamous cell carcinoma 99.4 4.7E-13 1.6E-17 108.6 9.1 64 333-401 14-77 (100)
218 2cpz_A CUG triplet repeat RNA- 99.4 3.1E-13 1.1E-17 112.5 8.2 66 333-402 22-87 (115)
219 3beg_B Splicing factor, argini 99.4 1.2E-13 4.1E-18 115.8 5.6 68 225-316 16-84 (115)
220 2dh8_A DAZ-associated protein 99.4 3.8E-13 1.3E-17 110.1 8.6 65 333-401 13-77 (105)
221 2jrs_A RNA-binding protein 39; 99.4 4E-13 1.4E-17 111.4 8.6 65 333-401 23-87 (108)
222 1p1t_A Cleavage stimulation fa 99.4 1.9E-13 6.5E-18 111.5 6.5 65 334-402 6-70 (104)
223 3pgw_S U1-70K; protein-RNA com 99.4 2.8E-13 9.5E-18 138.8 9.1 80 225-321 102-182 (437)
224 1l3k_A Heterogeneous nuclear r 99.4 4.3E-13 1.5E-17 120.4 9.2 82 225-323 104-185 (196)
225 3ucg_A Polyadenylate-binding p 99.4 4.4E-13 1.5E-17 106.0 8.2 61 336-400 6-66 (89)
226 1sjr_A Polypyrimidine tract-bi 99.4 3.2E-13 1.1E-17 120.7 8.0 78 224-322 45-125 (164)
227 2mss_A Protein (musashi1); RNA 99.4 2.3E-13 7.9E-18 104.5 6.1 60 338-401 1-60 (75)
228 4f02_A Polyadenylate-binding p 99.4 2.6E-13 8.8E-18 125.1 7.6 78 225-321 103-181 (213)
229 2dng_A Eukaryotic translation 99.4 6.9E-13 2.3E-17 108.3 9.3 63 333-400 12-74 (103)
230 2ywk_A Putative RNA-binding pr 99.4 4.6E-13 1.6E-17 107.4 8.0 64 333-401 13-76 (95)
231 4f25_A Polyadenylate-binding p 99.4 3.6E-13 1.2E-17 112.7 7.6 61 336-402 5-65 (115)
232 3zzy_A Polypyrimidine tract-bi 99.4 6.5E-13 2.2E-17 114.4 9.3 76 225-322 28-107 (130)
233 1wg5_A Heterogeneous nuclear r 99.4 6E-13 2.1E-17 109.3 8.6 64 333-401 12-76 (104)
234 1oo0_B CG8781-PA, drosophila Y 99.4 4.8E-13 1.6E-17 110.4 8.1 65 333-401 23-87 (110)
235 2khc_A Testis-specific RNP-typ 99.4 5.2E-13 1.8E-17 111.6 8.3 66 333-402 37-102 (118)
236 3ulh_A THO complex subunit 4; 99.4 6.6E-13 2.3E-17 108.9 8.8 65 333-402 26-90 (107)
237 2yh0_A Splicing factor U2AF 65 99.4 8E-13 2.7E-17 118.7 10.1 82 224-322 113-195 (198)
238 2g4b_A Splicing factor U2AF 65 99.4 5.2E-13 1.8E-17 117.3 8.5 78 225-319 94-172 (172)
239 2m2b_A RNA-binding protein 10; 99.4 1.9E-13 6.7E-18 116.8 5.5 65 333-402 20-86 (131)
240 1wi8_A EIF-4B, eukaryotic tran 99.4 7E-13 2.4E-17 108.4 8.6 62 333-399 12-74 (104)
241 2krb_A Eukaryotic translation 99.4 4.6E-13 1.6E-17 104.7 7.0 60 337-402 2-67 (81)
242 2dnl_A Cytoplasmic polyadenyla 99.4 4.3E-13 1.5E-17 111.9 7.2 79 223-318 6-85 (114)
243 2kxn_B Transformer-2 protein h 99.4 7.9E-13 2.7E-17 113.3 9.0 65 333-401 43-107 (129)
244 2e5i_A Heterogeneous nuclear r 99.4 9.2E-13 3.1E-17 112.6 9.2 75 225-322 25-103 (124)
245 1iqt_A AUF1, heterogeneous nuc 99.4 1.9E-13 6.5E-18 104.8 4.5 60 338-401 1-60 (75)
246 2dis_A Unnamed protein product 99.4 5.4E-13 1.9E-17 109.8 7.5 65 334-402 6-72 (109)
247 1wez_A HnRNP H', FTP-3, hetero 99.4 6.3E-13 2.1E-17 109.2 7.7 63 333-401 12-74 (102)
248 2fy1_A RNA-binding motif prote 99.4 8.4E-13 2.9E-17 110.8 8.6 64 334-402 5-68 (116)
249 2d9p_A Polyadenylate-binding p 99.4 1.1E-12 3.6E-17 107.1 8.9 63 333-401 12-74 (103)
250 2dnl_A Cytoplasmic polyadenyla 99.4 5E-13 1.7E-17 111.6 7.1 64 334-402 6-72 (114)
251 2diu_A KIAA0430 protein; struc 99.4 3.7E-13 1.3E-17 109.3 6.0 71 225-322 8-85 (96)
252 2ek1_A RNA-binding protein 12; 99.4 2.8E-13 9.5E-18 108.7 5.1 65 333-401 12-76 (95)
253 1x5o_A RNA binding motif, sing 99.4 1.6E-12 5.5E-17 107.9 10.0 65 333-402 22-86 (114)
254 2cqp_A RNA-binding protein 12; 99.4 5.2E-13 1.8E-17 107.8 6.7 66 333-402 12-77 (98)
255 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 1.3E-12 4.4E-17 111.9 9.6 66 333-402 60-125 (140)
256 2cpe_A RNA-binding protein EWS 99.4 6.1E-13 2.1E-17 110.3 7.3 66 333-402 12-85 (113)
257 2cpy_A RNA-binding protein 12; 99.4 3.9E-13 1.3E-17 112.2 6.1 64 333-401 12-76 (114)
258 1x4b_A Heterogeneous nuclear r 99.4 8E-13 2.7E-17 110.2 7.9 64 334-401 25-88 (116)
259 2bz2_A Negative elongation fac 99.4 4.1E-13 1.4E-17 113.9 6.1 74 223-321 37-111 (121)
260 1u6f_A Tcubp1, RNA-binding pro 99.4 9.1E-13 3.1E-17 113.2 8.5 66 333-402 39-104 (139)
261 2qfj_A FBP-interacting repress 99.4 7.3E-13 2.5E-17 120.7 8.1 81 225-322 125-206 (216)
262 2j8a_A Histone-lysine N-methyl 99.4 6.7E-13 2.3E-17 113.8 7.3 77 226-319 3-94 (136)
263 2kt5_A RNA and export factor-b 99.4 1.6E-12 5.3E-17 109.8 9.5 65 332-401 31-95 (124)
264 2dgv_A HnRNP M, heterogeneous 99.4 1.7E-12 5.8E-17 103.4 9.1 63 333-401 5-67 (92)
265 3ex7_B RNA-binding protein 8A; 99.4 8.3E-13 2.8E-17 111.6 7.6 66 333-402 19-84 (126)
266 2hgn_A Heterogeneous nuclear r 99.4 2.5E-13 8.7E-18 118.2 4.5 103 285-400 2-104 (139)
267 2do0_A HnRNP M, heterogeneous 99.4 2E-12 6.8E-17 107.2 9.5 64 333-401 12-75 (114)
268 2cq4_A RNA binding motif prote 99.4 6.7E-13 2.3E-17 110.3 6.5 62 335-400 24-85 (114)
269 1h2v_Z 20 kDa nuclear CAP bind 99.4 2.1E-12 7.2E-17 113.3 10.0 66 333-402 36-101 (156)
270 4a8x_A RNA-binding protein wit 99.4 6.5E-13 2.2E-17 104.7 6.0 63 335-401 3-66 (88)
271 2j76_E EIF-4B, EIF4B, eukaryot 99.4 7.1E-13 2.4E-17 107.9 6.4 63 333-400 16-79 (100)
272 2ad9_A Polypyrimidine tract-bi 99.4 1.4E-12 4.6E-17 110.8 8.2 62 330-401 25-86 (119)
273 2db1_A Heterogeneous nuclear r 99.4 9.8E-13 3.4E-17 110.7 7.2 63 334-401 15-80 (118)
274 2ki2_A SS-DNA binding protein 99.4 4.1E-13 1.4E-17 106.7 4.5 61 337-402 2-62 (90)
275 2dgw_A Probable RNA-binding pr 99.4 2.7E-12 9.2E-17 102.3 9.2 62 333-400 7-68 (91)
276 1sjq_A Polypyrimidine tract-bi 99.3 1.1E-12 3.7E-17 109.0 7.0 58 334-401 14-71 (105)
277 2hgl_A HNRPF protein, heteroge 99.3 1.1E-12 3.9E-17 113.6 7.3 63 333-400 41-106 (136)
278 2dnn_A RNA-binding protein 12; 99.3 1.2E-12 4.2E-17 109.1 7.3 62 334-401 14-75 (109)
279 3r27_A HnRNP L, heterogeneous 99.3 1.8E-12 6E-17 106.8 8.0 60 332-401 17-76 (100)
280 2dha_A FLJ20171 protein; RRM d 99.3 9.8E-13 3.3E-17 112.2 6.7 67 334-401 21-87 (123)
281 2cq3_A RNA-binding protein 9; 99.3 3.5E-12 1.2E-16 103.9 9.7 63 333-401 12-74 (103)
282 2pe8_A Splicing factor 45; RRM 99.3 3E-12 1E-16 106.0 9.3 81 224-320 7-93 (105)
283 2lmi_A GRSF-1, G-rich sequence 99.3 9.4E-13 3.2E-17 108.7 6.0 63 333-400 8-73 (107)
284 2cqi_A Nucleolysin TIAR; RNA r 99.3 2.4E-12 8.3E-17 104.9 8.4 63 333-401 12-74 (103)
285 2jwn_A Embryonic polyadenylate 99.3 2.1E-12 7.2E-17 108.8 8.1 62 335-400 35-96 (124)
286 2hgm_A HNRPF protein, heteroge 99.3 1.9E-12 6.6E-17 110.9 7.6 62 334-401 40-103 (126)
287 3u1l_A PRE-mRNA-splicing facto 99.3 1.1E-12 3.9E-17 124.1 6.8 75 223-320 132-228 (240)
288 2cq1_A PTB-like protein L; RRM 99.3 2.8E-12 9.4E-17 105.6 8.2 59 333-401 12-70 (101)
289 1fje_B Nucleolin RBD12, protei 99.3 2.7E-12 9.2E-17 113.4 8.5 75 224-320 98-173 (175)
290 1b7f_A Protein (SXL-lethal pro 99.3 2.5E-12 8.6E-17 112.3 8.2 78 224-318 88-168 (168)
291 3q2s_C Cleavage and polyadenyl 99.3 1.8E-12 6.3E-17 121.6 7.8 64 335-402 67-132 (229)
292 2xs2_A Deleted in azoospermia- 99.3 1E-12 3.4E-17 107.0 5.2 62 334-400 7-68 (102)
293 1wel_A RNA-binding protein 12; 99.3 1.6E-12 5.3E-17 110.1 6.5 64 333-400 22-85 (124)
294 1wex_A Hypothetical protein (r 99.3 4E-12 1.4E-16 105.1 8.6 59 333-401 12-70 (104)
295 2dgx_A KIAA0430 protein; RRM d 99.3 3.1E-12 1.1E-16 103.4 7.7 63 333-402 6-72 (96)
296 1x4d_A Matrin 3; structural ge 99.3 1.6E-12 5.6E-17 107.3 5.6 59 333-401 12-71 (102)
297 1fxl_A Paraneoplastic encephal 99.3 4.3E-12 1.5E-16 110.4 8.6 62 336-401 2-63 (167)
298 2nlw_A Eukaryotic translation 99.3 2.8E-12 9.6E-17 105.4 6.8 62 335-402 14-81 (105)
299 1x4a_A Splicing factor, argini 99.3 5.6E-12 1.9E-16 103.9 8.4 63 333-402 19-81 (109)
300 3nmr_A Cugbp ELAV-like family 99.3 4.5E-12 1.5E-16 111.3 7.9 63 335-401 2-66 (175)
301 3lqv_A PRE-mRNA branch site pr 99.3 6.1E-12 2.1E-16 104.5 7.8 61 334-401 6-66 (115)
302 2dit_A HIV TAT specific factor 99.3 1.3E-11 4.5E-16 102.6 9.7 80 222-322 12-103 (112)
303 2cpi_A CCR4-NOT transcription 99.3 4E-12 1.4E-16 105.5 6.3 65 334-402 13-83 (111)
304 2fc9_A NCL protein; structure 99.3 7.8E-12 2.7E-16 101.5 7.8 62 333-402 12-73 (101)
305 1x4c_A Splicing factor, argini 99.3 1.5E-11 5E-16 101.5 9.2 59 333-402 12-70 (108)
306 2ytc_A PRE-mRNA-splicing facto 99.3 1.8E-11 6E-16 96.0 9.2 60 333-402 9-68 (85)
307 3pgw_A U1-A; protein-RNA compl 99.3 8.2E-12 2.8E-16 119.0 8.7 75 223-319 205-281 (282)
308 2fc8_A NCL protein; structure 99.3 9.3E-12 3.2E-16 101.1 7.8 63 333-402 12-74 (102)
309 3d2w_A TAR DNA-binding protein 99.3 8.5E-12 2.9E-16 99.8 7.3 57 333-398 8-64 (89)
310 2voo_A Lupus LA protein; RNA-b 99.3 6.9E-12 2.4E-16 114.7 7.6 105 293-402 63-170 (193)
311 2err_A Ataxin-2-binding protei 99.3 6.5E-12 2.2E-16 104.0 6.7 63 333-401 26-88 (109)
312 1x4f_A Matrin 3; structural ge 99.2 5.3E-12 1.8E-16 106.0 5.6 59 333-401 22-81 (112)
313 2lcw_A RNA-binding protein FUS 98.9 6.6E-13 2.2E-17 110.9 0.0 65 334-402 5-77 (116)
314 1qm9_A Polypyrimidine tract-bi 99.2 5.2E-12 1.8E-16 114.0 5.7 75 224-320 119-196 (198)
315 1fj7_A Nucleolin RBD1, protein 99.2 1.1E-12 3.7E-17 106.6 0.9 62 334-400 15-76 (101)
316 2cpx_A Hypothetical protein FL 99.2 2.9E-12 1E-16 106.4 3.4 66 333-402 22-87 (115)
317 2a3j_A U1 small nuclear ribonu 99.2 1.8E-11 6.1E-16 104.9 8.4 63 333-402 26-92 (127)
318 2dnq_A RNA-binding protein 4B; 99.2 2.1E-11 7.4E-16 96.9 8.2 57 333-401 5-61 (90)
319 2adc_A Polypyrimidine tract-bi 99.2 1.1E-11 3.8E-16 115.3 7.2 74 225-320 151-227 (229)
320 1why_A Hypothetical protein ri 99.2 1.5E-11 5.3E-16 99.1 7.1 60 333-402 14-73 (97)
321 1nu4_A U1A RNA binding domain; 99.2 6.5E-12 2.2E-16 101.0 4.6 63 333-402 5-71 (97)
322 2f3j_A RNA and export factor b 99.2 2.2E-11 7.5E-16 109.9 8.2 65 333-402 85-149 (177)
323 2cpj_A Non-POU domain-containi 99.2 1.9E-11 6.4E-16 99.0 6.9 60 333-402 12-71 (99)
324 2wbr_A GW182, gawky, LD47780P; 99.2 1.6E-11 5.5E-16 98.5 6.4 58 335-402 6-63 (89)
325 2hvz_A Splicing factor, argini 99.2 1.4E-11 4.9E-16 99.9 6.2 56 337-401 1-56 (101)
326 1wf1_A RNA-binding protein RAL 99.2 2.9E-11 9.9E-16 99.8 7.5 75 309-401 6-81 (110)
327 1x4g_A Nucleolysin TIAR; struc 99.2 2.4E-11 8.3E-16 100.1 7.0 59 334-402 23-81 (109)
328 2la4_A Nuclear and cytoplasmic 99.2 3.6E-11 1.2E-15 97.5 7.7 57 335-401 26-82 (101)
329 3tyt_A Heterogeneous nuclear r 99.2 1.7E-11 5.7E-16 113.0 6.3 68 225-311 123-193 (205)
330 3v4m_A Splicing factor U2AF 65 99.2 3.2E-11 1.1E-15 99.7 7.2 81 224-319 4-95 (105)
331 1wf0_A TDP-43, TAR DNA-binding 99.2 1.4E-11 4.7E-16 97.6 4.7 56 335-399 4-59 (88)
332 2jvr_A Nucleolar protein 3; RN 99.2 2.3E-11 7.9E-16 101.8 6.1 60 335-402 27-87 (111)
333 1fjc_A Nucleolin RBD2, protein 99.2 1.9E-11 6.5E-16 98.1 5.3 61 333-402 13-73 (96)
334 2j8a_A Histone-lysine N-methyl 99.2 2.6E-11 8.7E-16 104.0 6.1 60 337-400 3-74 (136)
335 3beg_B Splicing factor, argini 99.2 2.5E-11 8.7E-16 101.5 6.0 57 335-402 15-71 (115)
336 2kvi_A Nuclear polyadenylated 99.2 4.7E-11 1.6E-15 96.2 7.2 57 333-401 7-64 (96)
337 2dgu_A Heterogeneous nuclear r 99.2 4.7E-11 1.6E-15 97.4 7.3 58 333-402 8-65 (103)
338 2e5j_A Methenyltetrahydrofolat 99.2 3.7E-11 1.3E-15 96.9 6.6 60 334-402 17-76 (97)
339 2xnq_A Nuclear polyadenylated 99.2 6.1E-11 2.1E-15 96.1 7.9 57 333-401 19-76 (97)
340 1whx_A Hypothetical protein ri 99.2 2.5E-11 8.6E-16 100.9 5.7 58 335-402 9-66 (111)
341 2dgt_A RNA-binding protein 30; 99.2 6.9E-11 2.4E-15 94.3 7.9 57 333-401 7-63 (92)
342 3ue2_A Poly(U)-binding-splicin 99.2 7.5E-11 2.5E-15 99.8 8.3 82 225-319 20-107 (118)
343 2jvo_A Nucleolar protein 3; nu 99.1 5.8E-11 2E-15 98.3 7.3 58 333-402 28-85 (108)
344 2cq2_A Hypothetical protein LO 99.1 3.7E-11 1.3E-15 101.1 6.1 60 333-402 22-83 (114)
345 3sde_A Paraspeckle component 1 99.1 7E-11 2.4E-15 112.1 8.6 79 225-321 96-179 (261)
346 3egn_A RNA-binding protein 40; 99.1 1.1E-11 3.6E-16 107.3 2.6 63 333-402 42-112 (143)
347 2e5g_A U6 snRNA-specific termi 99.1 1.6E-10 5.5E-15 92.6 9.4 57 335-400 7-63 (94)
348 2cpd_A Apobec-1 stimulating pr 99.1 1.5E-10 5.1E-15 93.6 9.0 59 333-401 12-70 (99)
349 2dnp_A RNA-binding protein 14; 99.1 9.9E-11 3.4E-15 93.0 7.2 57 333-401 6-62 (90)
350 2hzc_A Splicing factor U2AF 65 99.1 4.8E-11 1.6E-15 93.8 5.0 59 335-399 5-70 (87)
351 2cqh_A IGF-II mRNA-binding pro 99.1 5.7E-11 2E-15 94.8 4.7 58 334-402 6-64 (93)
352 1jmt_A Splicing factor U2AF 35 99.1 4.3E-11 1.5E-15 98.8 3.9 71 230-318 20-103 (104)
353 1wg1_A KIAA1579 protein, homol 99.0 1.6E-10 5.6E-15 91.6 5.6 56 335-401 4-59 (88)
354 2pe8_A Splicing factor 45; RRM 99.0 4.9E-10 1.7E-14 92.6 8.6 65 334-402 6-76 (105)
355 2e44_A Insulin-like growth fac 99.0 1.8E-10 6.2E-15 92.3 5.8 60 334-401 13-73 (96)
356 1x5p_A Negative elongation fac 99.0 5.6E-10 1.9E-14 89.9 8.3 58 333-402 12-69 (97)
357 3zzy_A Polypyrimidine tract-bi 99.0 4.2E-10 1.4E-14 96.8 7.9 59 335-402 27-86 (130)
358 1sjr_A Polypyrimidine tract-bi 99.0 5.5E-10 1.9E-14 99.7 8.7 60 335-402 45-104 (164)
359 3tht_A Alkylated DNA repair pr 99.0 4E-10 1.4E-14 111.9 8.6 74 222-318 15-96 (345)
360 2e5i_A Heterogeneous nuclear r 98.9 1.9E-09 6.4E-14 92.0 8.6 56 337-402 26-82 (124)
361 2diu_A KIAA0430 protein; struc 98.9 1.2E-09 4.1E-14 88.6 7.0 57 333-402 5-66 (96)
362 2bz2_A Negative elongation fac 98.9 1.4E-09 4.9E-14 91.9 6.6 57 333-401 36-92 (121)
363 3u1l_A PRE-mRNA-splicing facto 98.9 1.1E-09 3.9E-14 103.5 6.1 84 304-402 107-199 (240)
364 3s6e_A RNA-binding protein 39; 98.9 2.1E-09 7.3E-14 90.2 7.0 76 223-319 5-91 (114)
365 2d9o_A DNAJ (HSP40) homolog, s 98.9 5.5E-09 1.9E-13 85.7 9.2 74 225-322 10-91 (100)
366 3v4m_A Splicing factor U2AF 65 98.8 4.3E-09 1.5E-13 86.9 6.0 65 334-402 3-79 (105)
367 3tht_A Alkylated DNA repair pr 98.8 3.9E-09 1.3E-13 104.8 6.7 60 333-402 15-76 (345)
368 2dit_A HIV TAT specific factor 98.8 1.5E-08 5E-13 84.0 8.2 62 333-402 12-84 (112)
369 3ue2_A Poly(U)-binding-splicin 98.7 1.4E-08 4.7E-13 85.7 6.3 64 335-402 19-91 (118)
370 2d9o_A DNAJ (HSP40) homolog, s 98.7 7E-08 2.4E-12 79.1 10.0 47 346-401 27-73 (100)
371 2dnr_A Synaptojanin-1; RRM dom 98.7 2.4E-08 8.3E-13 80.2 6.6 71 225-320 7-85 (91)
372 1jmt_A Splicing factor U2AF 35 98.7 6.3E-09 2.1E-13 85.7 2.2 57 341-402 20-88 (104)
373 1owx_A Lupus LA protein, SS-B, 98.5 8.4E-08 2.9E-12 81.3 5.5 73 224-319 17-94 (121)
374 1owx_A Lupus LA protein, SS-B, 98.5 3E-07 1E-11 77.9 8.1 61 332-402 14-76 (121)
375 1ufw_A Synaptojanin 2; RNP dom 98.4 3.1E-07 1.1E-11 74.2 5.8 70 225-319 15-93 (95)
376 3dxb_A Thioredoxin N-terminall 98.4 2.9E-07 9.9E-12 84.8 5.8 70 237-319 141-211 (222)
377 3s6e_A RNA-binding protein 39; 98.3 7.2E-07 2.5E-11 74.7 6.5 60 335-402 6-75 (114)
378 2dhx_A Poly (ADP-ribose) polym 97.8 9.3E-05 3.2E-09 60.5 8.5 87 225-349 8-99 (104)
379 2l9w_A U4/U6 snRNA-associated- 97.7 6.2E-05 2.1E-09 62.2 7.0 70 225-317 21-96 (117)
380 3dxb_A Thioredoxin N-terminall 97.7 8.6E-05 3E-09 68.1 7.7 51 348-402 141-195 (222)
381 2dnr_A Synaptojanin-1; RRM dom 97.6 0.00013 4.3E-09 58.5 6.3 57 333-401 4-68 (91)
382 1ufw_A Synaptojanin 2; RNP dom 97.3 0.00014 4.6E-09 58.8 3.2 57 333-401 12-77 (95)
383 1wwh_A Nucleoporin 35, nucleop 96.7 0.0058 2E-07 51.2 8.5 73 223-319 22-95 (119)
384 1whv_A Poly(A)-specific ribonu 96.6 0.0042 1.4E-07 50.2 6.1 52 225-302 16-67 (100)
385 1uw4_A UPF3X; nonsense mediate 96.5 0.0093 3.2E-07 47.7 8.1 70 226-310 2-72 (91)
386 2dhx_A Poly (ADP-ribose) polym 96.5 0.0096 3.3E-07 48.6 8.0 58 335-400 7-65 (104)
387 1wey_A Calcipressin 1; structu 96.5 0.0079 2.7E-07 49.2 7.3 73 225-320 5-83 (104)
388 1whv_A Poly(A)-specific ribonu 96.4 0.0058 2E-07 49.4 6.3 54 336-402 16-69 (100)
389 3ctr_A Poly(A)-specific ribonu 96.4 0.006 2E-07 49.5 6.2 51 226-302 7-57 (101)
390 3ctr_A Poly(A)-specific ribonu 95.8 0.0065 2.2E-07 49.2 3.9 52 337-401 7-58 (101)
391 1uw4_A UPF3X; nonsense mediate 95.4 0.043 1.5E-06 43.8 7.2 60 337-400 2-63 (91)
392 3p3d_A Nucleoporin 53; structu 95.2 0.024 8.1E-07 48.3 5.2 89 226-319 8-97 (132)
393 3pq1_A Poly(A) RNA polymerase; 94.4 0.019 6.5E-07 58.8 3.2 56 225-303 53-108 (464)
394 2l08_A Regulator of nonsense t 93.9 0.086 3E-06 42.5 5.4 71 225-310 9-80 (97)
395 2l9w_A U4/U6 snRNA-associated- 93.3 0.2 6.7E-06 41.4 6.7 60 334-399 19-79 (117)
396 2l08_A Regulator of nonsense t 91.6 0.21 7.3E-06 40.2 4.7 62 335-400 8-71 (97)
397 3pq1_A Poly(A) RNA polymerase; 90.3 0.16 5.4E-06 52.0 3.6 55 336-400 53-107 (464)
398 1wwh_A Nucleoporin 35, nucleop 85.4 2.1 7.1E-05 35.6 6.8 55 335-400 23-77 (119)
399 1wey_A Calcipressin 1; structu 79.8 2.2 7.4E-05 34.7 4.6 56 336-401 5-65 (104)
400 3d45_A Poly(A)-specific ribonu 72.5 6.8 0.00023 40.3 7.2 52 225-302 440-491 (507)
401 3d45_A Poly(A)-specific ribonu 69.9 8.8 0.0003 39.4 7.4 53 336-401 440-492 (507)
402 3p3d_A Nucleoporin 53; structu 32.9 29 0.00099 29.2 3.1 60 336-400 7-80 (132)
403 4e8u_A Putative uncharacterize 24.4 1.1E+02 0.0039 26.7 5.5 49 337-392 13-72 (172)
404 4eyt_A Telomerase associated p 21.2 3E+02 0.01 21.5 8.3 54 224-302 11-64 (129)
405 3uzu_A Ribosomal RNA small sub 20.9 47 0.0016 31.0 2.5 34 226-259 115-148 (279)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=4.7e-30 Score=231.95 Aligned_cols=156 Identities=17% Similarity=0.314 Sum_probs=132.5
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
+...++|||+|||+++++++|+.+|+.||.|.+|+|+..+. + +.++|||||+|.+.++|..||
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~---------------g~~~g~afV~f~~~~~A~~A~ 72 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPN--T---------------KRSRGFGFVTYATVEEVDAAM 72 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT--T---------------CCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCC--C---------------CCccceEEEEeCCHHHHHHHH
Confidence 34579999999999999999999999999999999965431 1 235699999999999999999
Q ss_pred hccceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCC
Q 015686 302 AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (402)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~s 381 (402)
.+++..|.|+.|.|.++........ .....+.++|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.+
T Consensus 73 ~~~~~~~~g~~l~v~~~~~~~~~~~---~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~ 145 (196)
T 1l3k_A 73 NARPHKVDGRVVEPKRAVSREDSQR---PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY----GKIEVIEIMTDRGSGKK 145 (196)
T ss_dssp HTCSCEETTEECEEEECCC--------------CCSEEEEECCTTTCCHHHHHHHHTTT----SCEEEEEEEECTTTCCE
T ss_pred hcCCCEECCEEeeeecccCcccccc---cccCCCcceEEEeCCCCCCCHHHHHHHHhcC----CCeEEEEEeecCCCCCc
Confidence 9999999999999999875432221 1123456899999999999999999999999 99999999999889999
Q ss_pred ceEEEEEecCHHHHHHHHHh
Q 015686 382 KGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 382 kG~aFV~F~s~e~A~~Al~~ 401 (402)
+|||||+|.++++|.+||.+
T Consensus 146 ~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 146 RGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp EEEEEEEESSHHHHHHHHHC
T ss_pred cceEEEEECCHHHHHHHHHh
Confidence 99999999999999999974
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-29 Score=222.14 Aligned_cols=148 Identities=22% Similarity=0.312 Sum_probs=132.1
Q ss_pred cEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH-hcc
Q 015686 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (402)
Q Consensus 226 ~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al-~ln 304 (402)
|+|||+|||+++++++|+.+|+.||.|.+|+|+..+. +.++|||||+|.+.++|..|+ .+|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~------------------~~~~g~afV~f~~~~~a~~A~~~l~ 62 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN------------------NKNVNYAFVEYHQSHDANIALQTLN 62 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-------------------CCEEEEEEEESSHHHHHHHHHHHT
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC------------------CCCCCEEEEEeCCHHHHHHHHHHcC
Confidence 6899999999999999999999999999999965321 225699999999999999999 599
Q ss_pred ceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceE
Q 015686 305 MAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGI 384 (402)
Q Consensus 305 g~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~ 384 (402)
|..+.|+.|.|.++.+... ....+.++|||+|||+.+++++|+++|+.| |.|..|.|++++.+|.++||
T Consensus 63 ~~~~~g~~i~v~~~~~~~~-------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~~~~~g~ 131 (166)
T 3md3_A 63 GKQIENNIVKINWAFQSQQ-------SSSDDTFNLFVGDLNVNVDDETLRNAFKDF----PSYLSGHVMWDMQTGSSRGY 131 (166)
T ss_dssp TCEETTEECEEEECCCCCC-------CCCTTCEEEEEESCCTTCCHHHHHHHHTTS----TTEEEEEEEECTTTCCEEEE
T ss_pred CCccCCCeeEEEEcCCCCC-------CCCCCCceEEECCCCCCCCHHHHHHHHhcc----CCeeEEEEEecCCCCCcceE
Confidence 9999999999999865432 224467899999999999999999999999 99999999999999999999
Q ss_pred EEEEecCHHHHHHHHHhC
Q 015686 385 AYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 385 aFV~F~s~e~A~~Al~~l 402 (402)
|||+|.+.++|.+||..|
T Consensus 132 afV~f~~~~~A~~A~~~l 149 (166)
T 3md3_A 132 GFVSFTSQDDAQNAMDSM 149 (166)
T ss_dssp EEEEESCHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHh
Confidence 999999999999999753
No 3
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=7.1e-29 Score=217.69 Aligned_cols=148 Identities=19% Similarity=0.301 Sum_probs=132.1
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
.++|||+|||+++++++|+.+|+.||.|.+++++..+. + +.++|||||+|.+.++|..|+. |
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~--~---------------~~~~g~afV~f~~~~~A~~a~~~l 64 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI--T---------------GQSLGYGFVNYIDPKDAEKAINTL 64 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTT--T---------------CCEEEEEEEEESSHHHHHHHHHHH
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC--C---------------CcceeEEEEEECCHHHHHHHHHHc
Confidence 58999999999999999999999999999999865331 1 2356999999999999999996 9
Q ss_pred cceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCce
Q 015686 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG 383 (402)
||..+.|+.|.|.++.+... ....++|||+|||..+++++|+++|+.| |.|..|+|++++.+|.++|
T Consensus 65 ~~~~~~g~~l~v~~~~~~~~---------~~~~~~l~v~nl~~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~g~~~g 131 (167)
T 1fxl_A 65 NGLRLQTKTIKVSYARPSSA---------SIRDANLYVSGLPKTMTQKELEQLFSQY----GRIITSRILVDQVTGVSRG 131 (167)
T ss_dssp TTCEETTEECEEEECCCCCG---------GGTTCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEE
T ss_pred CCCccCCceEEEEecCCCcc---------cCCCCcEEECCCCCcCCHHHHHHHHHhc----CCEeEEEEEecCCCCCccc
Confidence 99999999999999865422 2356889999999999999999999999 9999999999988999999
Q ss_pred EEEEEecCHHHHHHHHHhC
Q 015686 384 IAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 384 ~aFV~F~s~e~A~~Al~~l 402 (402)
||||+|.+.++|.+|++.|
T Consensus 132 ~afV~f~~~~~A~~A~~~l 150 (167)
T 1fxl_A 132 VGFIRFDKRIEAEEAIKGL 150 (167)
T ss_dssp EEEEEESSHHHHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHh
Confidence 9999999999999999753
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=5.9e-29 Score=219.07 Aligned_cols=148 Identities=20% Similarity=0.301 Sum_probs=132.3
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
.++|||+|||+++++++|+.+|+.||.|.+|+|+..+. + +.++|||||+|.+.++|..|+. |
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~A~~a~~~l 65 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYK--T---------------GYSYGYAFVDFTSEMDSQRAIKVL 65 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETT--T---------------TEECSEEEEEESSHHHHHHHHHHH
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCC--C---------------CccceEEEEEECCHHHHHHHHHhc
Confidence 68999999999999999999999999999999865321 1 2356999999999999999996 9
Q ss_pred cceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCce
Q 015686 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG 383 (402)
||..+.|+.|.|.++.+... ..+.++|||+|||..+++++|+++|+.| |.|..|+|+++..+|.++|
T Consensus 66 ~~~~~~g~~l~v~~~~~~~~---------~~~~~~l~v~nl~~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~~~~~g 132 (168)
T 1b7f_A 66 NGITVRNKRLKVSYARPGGE---------SIKDTNLYVTNLPRTITDDQLDTIFGKY----GSIVQKNILRDKLTGRPRG 132 (168)
T ss_dssp TTCEETTEECEEEECCCCSS---------TTTTCEEEEESCCTTCCHHHHHHHHTSS----SCEEEEEEEECTTTCCEEE
T ss_pred CCCEeCCcEEEEEecCCCcc---------cCCCCCEEEeCCCCCCCHHHHHHhhhcC----CcEEEEEEEEcCCCCCcce
Confidence 99999999999999865432 2356899999999999999999999999 9999999999988899999
Q ss_pred EEEEEecCHHHHHHHHHhC
Q 015686 384 IAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 384 ~aFV~F~s~e~A~~Al~~l 402 (402)
||||+|.+.++|.+|++.|
T Consensus 133 ~afV~f~~~~~A~~A~~~l 151 (168)
T 1b7f_A 133 VAFVRYNKREEAQEAISAL 151 (168)
T ss_dssp EEEEEESSHHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHh
Confidence 9999999999999999753
No 5
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=4.5e-29 Score=219.92 Aligned_cols=147 Identities=18% Similarity=0.351 Sum_probs=129.7
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhc
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~l 303 (402)
+.++|||+|||+++++++|+.+|+.||.|.+|+|++.+. + +.++|||||+|.+.++|..||.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------g~~~g~afV~f~~~~~a~~A~~- 63 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPA--T---------------GRSRGFGFLSFEKPSSVDEVVK- 63 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTT--T---------------SSCCSCEEEEESSTHHHHHHHH-
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCC--C---------------CCccceEEEEEccHHHHHHHHh-
Confidence 368999999999999999999999999999999854321 1 3367999999999999999998
Q ss_pred cceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCce
Q 015686 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG 383 (402)
++..+.|+.|.|.++.+... ..+.++|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|
T Consensus 64 ~~~~~~g~~i~v~~~~~~~~---------~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~~~g~~~g 130 (167)
T 2cjk_A 64 TQHILDGKVIDPKRAIPRDE---------QDKTGKIFVGGIGPDVRPKEFEEFFSQW----GTIIDAQLMLDKDTGQSRG 130 (167)
T ss_dssp SCCEETTEECCCEECCCHHH---------HHHCEEEEEEEECTTCCHHHHHHHHHTT----SCCSEEECCCSSSSSTTSE
T ss_pred cccccCCeEcccccccchhh---------ccCCCeEEECCCCCCCCHHHHHHHHHhC----ccEEEEEEEEcCCCCccce
Confidence 36799999999998865432 2246799999999999999999999999 9999999999988999999
Q ss_pred EEEEEecCHHHHHHHHHh
Q 015686 384 IAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 384 ~aFV~F~s~e~A~~Al~~ 401 (402)
||||+|.+.++|.+||++
T Consensus 131 ~afV~f~~~~~a~~A~~~ 148 (167)
T 2cjk_A 131 FGFVTYDSADAVDRVCQN 148 (167)
T ss_dssp EEEEEESSHHHHHHHHHC
T ss_pred EEEEEECCHHHHHHHHhC
Confidence 999999999999999973
No 6
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=9.2e-29 Score=229.12 Aligned_cols=148 Identities=23% Similarity=0.341 Sum_probs=128.8
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
.+||||||||+++|+++|+++|++||.|.+|+|++++. + ++++|||||+|.+.++|..||. +
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--t---------------g~~~G~afV~F~~~~~A~~Ai~~~ 77 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI--T---------------RRSLGYAYVNFQQPADAERALDTM 77 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT--T---------------CCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccC--C---------------CCccccccceeCCHHHHHHHHHHh
Confidence 58999999999999999999999999999999976432 1 2367999999999999999995 9
Q ss_pred cceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCce
Q 015686 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG 383 (402)
|+..+.|+.|++.++....... .....+|||+|||+.+++++|+++|+.| |.|..|+|++|. +.++|
T Consensus 78 ~~~~~~g~~i~~~~~~~~~~~~-------~~~~~~l~v~nl~~~~t~~~l~~~F~~~----G~i~~~~i~~d~--~~~~g 144 (213)
T 4f02_A 78 NFDVIKGKPVRIMWSQRDPSLR-------KSGVGNIFIKNLDKSIDNKALYDTFSAF----GNILSCKVVCDE--NGSKG 144 (213)
T ss_dssp TTCEETTEECEEEECCCCTHHH-------HHCTTEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEEET--TEEEE
T ss_pred hhhhcCCccccccccccccccc-------ccccccceECCcccccHHHHHHHHHhhc----CCeEEEEeeccC--CCCce
Confidence 9999999999998876432211 2245789999999999999999999999 999999999984 45799
Q ss_pred EEEEEecCHHHHHHHHHhC
Q 015686 384 IAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 384 ~aFV~F~s~e~A~~Al~~l 402 (402)
||||+|.+.++|.+||+.|
T Consensus 145 ~~fV~f~~~~~a~~Ai~~l 163 (213)
T 4f02_A 145 YGFVHFETQEAAERAIEKM 163 (213)
T ss_dssp EEEEEESSHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHh
Confidence 9999999999999999753
No 7
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=2.5e-28 Score=216.14 Aligned_cols=143 Identities=20% Similarity=0.383 Sum_probs=127.0
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhc----C-------CeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEe
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKF----G-------EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~----G-------~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~ 292 (402)
+.++|||+|||+++++++|+.+|+.| | .|.++.+. .++|||||+|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-----------------------~~~g~afV~f~ 59 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----------------------QDKNFAFLEFR 59 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-----------------------TTTTEEEEEES
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-----------------------CCCCEEEEEeC
Confidence 36899999999999999999999999 6 66665551 24689999999
Q ss_pred echhHHHHHhccceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEE
Q 015686 293 SEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRV 372 (402)
Q Consensus 293 s~e~A~~Al~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI 372 (402)
+.++|..|+.+||..|.|+.|.|.++.... .....++|||+|||..+++++|+++|+.| |.|..|+|
T Consensus 60 ~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~---------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~v~i 126 (172)
T 2g4b_A 60 SVDETTQAMAFDGIIFQGQSLKIRRPHDYQ---------PLPGAHKLFIGGLPNYLNDDQVKELLTSF----GPLKAFNL 126 (172)
T ss_dssp SHHHHHHHGGGTTCEETTEECEEECCSSCC---------CCTTTTCEEEECCCTTCCHHHHHHHHHTT----SCEEEEEE
T ss_pred CHHHHHHHHHhCCcEecCceeeecCCcccC---------CCCCCCEEEEEcCCCcCCHHHHHHHHHhc----CCceEEEE
Confidence 999999999999999999999999875432 12346899999999999999999999999 99999999
Q ss_pred eecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 373 IRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 373 ~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
++++.+|.++|||||+|.+.++|.+|++.|
T Consensus 127 ~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 156 (172)
T 2g4b_A 127 VKDSATGLSKGYAFCEYVDINVTDQAIAGL 156 (172)
T ss_dssp EECTTTCSEEEEEEEEESSTTHHHHHHHHH
T ss_pred EecCCCCCcceEEEEEeCCHHHHHHHHHHc
Confidence 999889999999999999999999999753
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=2.2e-28 Score=216.53 Aligned_cols=150 Identities=17% Similarity=0.304 Sum_probs=126.5
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
.++|||+|||+++++++|+.+|++||.|.+|+|++.+.... +.++|||||+|.+.++|+.|+. |
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~---------------~~~~g~afV~f~~~~~A~~A~~~l 67 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNP---------------PQSKGCCFVTFYTRKAALEAQNAL 67 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSS---------------CEEEEEEEEEESSHHHHHHHHHHH
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCC---------------CCcceEEEEEECCHHHHHHHHHHh
Confidence 68999999999999999999999999999999976542111 1366999999999999999996 9
Q ss_pred cceEEc---ceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCC
Q 015686 304 NMAVIG---GNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV 380 (402)
Q Consensus 304 ng~~l~---Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~ 380 (402)
||..+. ++.|.+.++..... .....++|||+|||+.+++++|+++|+.| |.|..|+|++++ +|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~----G~i~~v~~~~~~-~g~ 134 (175)
T 3nmr_A 68 HNMKVLPGMHHPIQMKPADSEKN--------NAVEDRKLFIGMISKKCTENDIRVMFSSF----GQIEECRILRGP-DGL 134 (175)
T ss_dssp TTTCCCTTCSSCCEEEECGGGCC--------SCGGGSEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECT-TSC
T ss_pred cCcEEccCCccceEEcccccccc--------ccCCCCeEEEcCCCCcCCHHHHHHHHHhC----CCEEEEEEEECC-CCC
Confidence 998765 46666665543221 12356899999999999999999999999 999999999995 599
Q ss_pred CceEEEEEecCHHHHHHHHHhC
Q 015686 381 GKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 381 skG~aFV~F~s~e~A~~Al~~l 402 (402)
++|||||+|.+.++|.+||+.|
T Consensus 135 ~~g~afV~f~~~~~A~~A~~~l 156 (175)
T 3nmr_A 135 SRGCAFVTFTTRAMAQTAIKAM 156 (175)
T ss_dssp EEEEEEEEESSHHHHHHHHHHH
T ss_pred EEEEEEEEECCHHHHHHHHHHh
Confidence 9999999999999999999754
No 9
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=6.3e-28 Score=218.30 Aligned_cols=152 Identities=20% Similarity=0.350 Sum_probs=127.9
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcC-----------CeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEe
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFG-----------EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G-----------~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~ 292 (402)
..++|||+|||+++++++|+.+|+.|| .|..+.+ +.++|||||+|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-----------------------~~~~g~afV~F~ 59 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-----------------------NQDKNFAFLEFR 59 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-----------------------ETTTTEEEEEES
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-----------------------cCCCCEEEEEeC
Confidence 368999999999999999999999994 4444443 225699999999
Q ss_pred echhHHHHHhccceEEcceeeccccCCCccccccC-----------CCCCccCCcceeEecCCCCCCCHHHHHHHhccCC
Q 015686 293 SEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKG-----------EDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLN 361 (402)
Q Consensus 293 s~e~A~~Al~lng~~l~Gr~I~V~~a~~~~k~~~~-----------~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~ 361 (402)
+.++|+.||.|||..|.|+.|.|.++......... .......+.++|||+|||+.+++++|+++|+.|
T Consensus 60 ~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~- 138 (198)
T 2yh0_A 60 SVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSF- 138 (198)
T ss_dssp CSHHHHHHGGGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTB-
T ss_pred CHHHHHHHHHhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHc-
Confidence 99999999999999999999999988654221110 001112467999999999999999999999999
Q ss_pred CCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 362 DLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 362 ~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
|.|..|+|++++.+|.++|||||+|.++++|..||+.|
T Consensus 139 ---G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 176 (198)
T 2yh0_A 139 ---GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 176 (198)
T ss_dssp ---SCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHH
T ss_pred ---CCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHc
Confidence 99999999999889999999999999999999999753
No 10
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.95 E-value=1.8e-28 Score=224.88 Aligned_cols=157 Identities=17% Similarity=0.330 Sum_probs=131.5
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
.++|||+|||+++++++|+.+|+.||.|..|+|+..+. + +.++|||||+|.+.++|..||. |
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~--~---------------g~~~g~afV~f~~~~~A~~A~~~l 90 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV--T---------------MKHKGFAFVEYEVPEAAQLALEQM 90 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-C--C----------------CCCSEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCC--C---------------CccCceEEEEeCCHHHHHHHHHHc
Confidence 58999999999999999999999999999999854321 1 2366999999999999999997 9
Q ss_pred cceEEcceeeccccCCCccccccC--CCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCC
Q 015686 304 NMAVIGGNHIRLDRACPPRKKLKG--EDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~--~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~s 381 (402)
||..|.|+.|.|.++......... .........++|||+|||..+++++|+++|+.| |.|..|+|++++.+|.+
T Consensus 91 ~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~g~~ 166 (216)
T 2qfj_A 91 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAF----GKIKSATLARDPTTGKH 166 (216)
T ss_dssp SSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTS----SCEEEEEEEECTTTCCE
T ss_pred cCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhcc----CCeeEEEEEecCCCCCc
Confidence 999999999999887654221100 000112456899999999999999999999999 99999999999989999
Q ss_pred ceEEEEEecCHHHHHHHHHhC
Q 015686 382 KGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 382 kG~aFV~F~s~e~A~~Al~~l 402 (402)
+|||||+|.+.++|.+||..|
T Consensus 167 ~g~afV~F~~~~~A~~A~~~l 187 (216)
T 2qfj_A 167 KGYGFIEYEKAQSSQDAVSSM 187 (216)
T ss_dssp EEEEEEEESSHHHHHHHHHHH
T ss_pred CceEEEEecCHHHHHHHHHHc
Confidence 999999999999999999853
No 11
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=1.9e-27 Score=220.39 Aligned_cols=150 Identities=13% Similarity=0.185 Sum_probs=125.3
Q ss_pred ccEEEEeCCC-CcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 225 LRTIFVGNLP-LKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 225 ~~tVfVgNLP-~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
.++|||+||| +.+++++|+.+|+.||.|.+|+|+.. .+|||||+|.+.++|+.||.
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----------------------~~g~afV~f~~~~~A~~Ai~~ 61 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----------------------KPGAAMVEMADGYAVDRAITH 61 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----------------------STTCEEEEESSHHHHHHHHHH
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 6899999999 89999999999999999999998421 24899999999999999996
Q ss_pred ccceEEcceeeccccCCCcccccc---------------CC-------------CCCccCCcceeEecCCCCCCCHHHHH
Q 015686 303 FNMAVIGGNHIRLDRACPPRKKLK---------------GE-------------DAPLYDIKKTVFVGNLPFDVKDEEIY 354 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~~---------------~~-------------~~~~~~~~~tLfV~NLp~~~teedL~ 354 (402)
|||..|.|+.|.|.++..+..... .. ......+.++|||+|||+.+++++|+
T Consensus 62 lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~ 141 (205)
T 3tyt_A 62 LNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFF 141 (205)
T ss_dssp HTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHH
T ss_pred hCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHH
Confidence 999999999999998754321000 00 00112456789999999999999999
Q ss_pred HHhccCCCCCCCe--EEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 355 QLFCGLNDLESSV--EAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 355 ~~F~~f~~~~G~I--~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
++|+.| |.| ..|+|+.+. |.++|||||+|.+.++|..||..|
T Consensus 142 ~~F~~~----G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~l 185 (205)
T 3tyt_A 142 EICDEL----GVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFL 185 (205)
T ss_dssp HHHHHH----TCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHH
T ss_pred HHHHhc----CCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHh
Confidence 999999 888 899998874 556799999999999999999764
No 12
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=4.4e-27 Score=224.46 Aligned_cols=138 Identities=24% Similarity=0.312 Sum_probs=127.0
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
....++|||+|||+++|+++|+.+|+.||.|..|.|.+ ++|||||.|.+.++|..|+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----------------------~kg~afV~f~~~~~A~~A~ 75 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----------------------DRGFGFIRLESRTLAEIAK 75 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----------------------TTTEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----------------------CCcEEEEEECCHHHHHHHH
Confidence 34478999999999999999999999999999998831 4589999999999999999
Q ss_pred h-ccceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCC
Q 015686 302 A-FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV 380 (402)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~ 380 (402)
. +||..|.|+.|.|.++. +..+|||+|||+.+++++|+++|+.| |.|..|.|+++ .+|.
T Consensus 76 ~~l~g~~i~g~~l~v~~a~---------------~~~~l~v~nl~~~~t~~~l~~~F~~~----G~i~~v~i~~~-~~g~ 135 (261)
T 3sde_A 76 AELDGTILKSRPLRIRFAT---------------HGAALTVKNLSPVVSNELLEQAFSQF----GPVEKAVVVVD-DRGR 135 (261)
T ss_dssp HHHTTCEETTEECEEEECC---------------CSSEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEEE-TTSC
T ss_pred HHcCCcEECCceeEeeecc---------------cCCcccccCCCCCCCHHHHHHHHHhc----CCeEEEEeeeC-CCCC
Confidence 6 99999999999999985 24789999999999999999999999 99999999999 6899
Q ss_pred CceEEEEEecCHHHHHHHHHhC
Q 015686 381 GKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 381 skG~aFV~F~s~e~A~~Al~~l 402 (402)
++|||||+|.+.++|.+||..|
T Consensus 136 ~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 136 ATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp EEEEEEEEESSHHHHHHHHHHH
T ss_pred cCcEEEEEeCCHHHHHHHHHHh
Confidence 9999999999999999999764
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.94 E-value=1.5e-27 Score=212.27 Aligned_cols=147 Identities=21% Similarity=0.302 Sum_probs=123.7
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
+...++|||+|||+++++++|+.+|..||.|..+.++.. ..+.++|||||+|.+.++|..||
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~------------------~~~~~~g~afV~f~~~~~a~~A~ 71 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDV------------------RTGTNRKFGYVDFESAEDLEKAL 71 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEE------------------EEETTTTEEEEEESSHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEEC------------------CCCccccEEEEEECCHHHHHHHH
Confidence 345799999999999999999999999998765222111 12346799999999999999999
Q ss_pred hccceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCC
Q 015686 302 AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (402)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~s 381 (402)
+|||..|.|+.|.|.++.+.... ...+.++|||+|||+.+++++|+++|+.| |.|..+ ..+|.+
T Consensus 72 ~l~g~~~~g~~l~v~~~~~~~~~-------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~----g~v~~~-----~~~~~~ 135 (175)
T 1fje_B 72 ELTGLKVFGNEIKLEKPKGRDSK-------KVRAARTLLAKNLSFNITEDELKEVFEDA----LEIRLV-----SQDGKS 135 (175)
T ss_dssp HGGGEEETTEEEEEECCCCSSCS-------TTGGGGEEEEESCCSSCCHHHHHHHCTTC----SEEEEE-----CSSSSC
T ss_pred hcCCCEeCCeEEEEecCCCcccc-------ccccCCEEEEeCCCCCCCHHHHHHHHHhc----CeEEEe-----cCCCCC
Confidence 99999999999999998754321 23467899999999999999999999999 877655 467889
Q ss_pred ceEEEEEecCHHHHHHHHHhC
Q 015686 382 KGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 382 kG~aFV~F~s~e~A~~Al~~l 402 (402)
+|||||+|.+.++|.+||..|
T Consensus 136 ~g~afV~f~~~~~A~~A~~~l 156 (175)
T 1fje_B 136 KGIAYIEFKSEADAEKNLEEK 156 (175)
T ss_dssp CSEEEEECSSHHHHHHHHHHH
T ss_pred ceEEEEEECCHHHHHHHHHHh
Confidence 999999999999999999853
No 14
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=1.5e-26 Score=222.76 Aligned_cols=139 Identities=20% Similarity=0.252 Sum_probs=119.5
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|+.||.|.+|+|+..+. . ++|||||+|.+.++|..||.
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----~---------------~~g~afV~f~~~~~A~~A~~ 99 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK----K---------------NFRFARIEFARYDGALAAIT 99 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT----S---------------SSEEEEEEESSHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----C---------------CcEEEEEEECCHHHHHHHHH
Confidence 3479999999999999999999999999999999965321 1 35899999999999999999
Q ss_pred ccceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCC-CeEEEEEeecCCCCCC
Q 015686 303 FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLES-SVEAVRVIRHPHMRVG 381 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G-~I~~vrI~~d~~~g~s 381 (402)
+||..|.|+.|.|.++ ..++|||+|||+.+++++|+++|..| | .|..|+|++++. |.+
T Consensus 100 ~~~~~~~g~~i~v~~~----------------~~~~l~v~nlp~~~t~~~l~~~f~~~----G~~i~~v~i~~~~~-~~~ 158 (292)
T 2ghp_A 100 KTHKVVGQNEIIVSHL----------------TECTLWMTNFPPSYTQRNIRDLLQDI----NVVALSIRLPSLRF-NTS 158 (292)
T ss_dssp TTTCEETTEECEEEEC----------------CSCEEEEECCCTTCCHHHHHHHHHHT----TCCCCEEECC--------
T ss_pred hCCcEeCCcEEEEEEC----------------CCCEEEEECCCCCCCHHHHHHHHHHh----CCCeEEEEEEeCCC-CCc
Confidence 9999999999999876 25899999999999999999999999 9 999999999865 889
Q ss_pred ceEEEEEecCHHHHHHHHHh
Q 015686 382 KGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 382 kG~aFV~F~s~e~A~~Al~~ 401 (402)
+|||||+|.+.++|..||..
T Consensus 159 ~g~afV~f~~~~~a~~A~~~ 178 (292)
T 2ghp_A 159 RRFAYIDVTSKEDARYCVEK 178 (292)
T ss_dssp CCEEEEECSSHHHHHHHHHH
T ss_pred ceEEEEEECCHHHHHHHHHH
Confidence 99999999999999999974
No 15
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=5.2e-26 Score=218.22 Aligned_cols=134 Identities=14% Similarity=0.222 Sum_probs=123.9
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
+++|||+|||+++++++|+.+|+.|| |..+.+. .++|||||+|.+.++|..|+. |
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~-----------------------~~~g~afV~f~~~~~A~~A~~~l 77 (284)
T 3smz_A 22 RRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVD-----------------------KYKGTAFVTLLNGEQAEAAINAF 77 (284)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEE-----------------------TTTTEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEe-----------------------cCCCEEEEEeCCHHHHHHHHHHc
Confidence 68999999999999999999999999 8888771 156899999999999999995 9
Q ss_pred cceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCce
Q 015686 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG 383 (402)
||..|.|+.|.|.++. ..++|||+|||+.+++++|+++|..| |.|..|+|++++.+|.++|
T Consensus 78 ~~~~~~g~~i~v~~~~---------------~~~~l~v~nlp~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~g~~~g 138 (284)
T 3smz_A 78 HQSRLRERELSVQLQP---------------TDALLCVANLPPSLTQQQFEELVRPF----GSLERCFLVYSERTGQSKG 138 (284)
T ss_dssp TTCEETTEECEEEECC---------------CSCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEE
T ss_pred CCCeeCCeEEEEEecC---------------CCCEEEEcCCCCcCCHHHHHHHHHhc----CCeeEEEEEeeCCCCccce
Confidence 9999999999998753 34789999999999999999999999 9999999999998999999
Q ss_pred EEEEEecCHHHHHHHHHh
Q 015686 384 IAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 384 ~aFV~F~s~e~A~~Al~~ 401 (402)
||||+|.+.++|..||..
T Consensus 139 ~afV~f~~~~~a~~A~~~ 156 (284)
T 3smz_A 139 YGFAEYMKKDSAARAKSD 156 (284)
T ss_dssp EEEEEESSHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHH
Confidence 999999999999999964
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.93 E-value=2.1e-25 Score=214.00 Aligned_cols=150 Identities=13% Similarity=0.106 Sum_probs=131.3
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH-hc
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al-~l 303 (402)
.++|||+|||+++++++|+.+|+.||.|..++++..+. + +.++|||||+|.+.++|..|+ .|
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~--~---------------g~~~g~afV~f~~~~~a~~A~~~l 157 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSER--T---------------GQSKGYGFAEYMKKDSAARAKSDL 157 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT--T---------------CCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCC--C---------------CccceEEEEEECCHHHHHHHHHHh
Confidence 57899999999999999999999999999999865321 1 235699999999999999999 59
Q ss_pred cceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCC-CHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCc
Q 015686 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDV-KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGK 382 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~-teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~sk 382 (402)
||..|.|+.|.|.++.+.... ....+.++|||+|||+.+ ++++|+++|+.| |.|..|+|++++ +|.++
T Consensus 158 ~~~~~~g~~i~v~~a~~~~~~------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~----G~i~~v~i~~~~-~g~~~ 226 (284)
T 3smz_A 158 LGKPLGPRTLYVHWTDAGQLT------PALLHSRCLCVDRLPPGFNDVDALCRALSAV----HSPTFCQLACGQ-DGQLK 226 (284)
T ss_dssp TTCEETTEECEEEECCGGGCC------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSS----SCCSEEEEEECS-SCCEE
T ss_pred CCCEeCCcEEEEEECCCCCCC------cccCCccEEEEecCCcccCCHHHHHHHhhCC----CCeEEEEEEECC-CCCcc
Confidence 999999999999998754322 223467899999999995 999999999999 999999999996 69999
Q ss_pred eEEEEEecCHHHHHHHHHhC
Q 015686 383 GIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 383 G~aFV~F~s~e~A~~Al~~l 402 (402)
|||||+|.++++|.+||..|
T Consensus 227 g~afV~f~~~~~A~~A~~~l 246 (284)
T 3smz_A 227 GFAVLEYETAEMAEEAQQQA 246 (284)
T ss_dssp EEEEEECSSHHHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHh
Confidence 99999999999999999753
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=1.1e-25 Score=216.78 Aligned_cols=154 Identities=16% Similarity=0.216 Sum_probs=127.2
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcC-CeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFG-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G-~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
..++|||+|||+++++++|+.+|+.|| .|..|+|+..+. +.++|||||+|.+.++|..|+.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~------------------~~~~g~afV~f~~~~~a~~A~~ 177 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF------------------NTSRRFAYIDVTSKEDARYCVE 177 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------------------------CCEEEEECSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC------------------CCcceEEEEEECCHHHHHHHHH
Confidence 468999999999999999999999999 999998854321 2256999999999999999997
Q ss_pred -ccceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCC-CCHHHHHHHhccCCCCCCCeEEEEEeecCC-CC
Q 015686 303 -FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFD-VKDEEIYQLFCGLNDLESSVEAVRVIRHPH-MR 379 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~-~teedL~~~F~~f~~~~G~I~~vrI~~d~~-~g 379 (402)
|||..|.|+.|.|.++.+....... .....+.++|||+|||+. +++++|+++|+.| |.|..|+|+++.. +|
T Consensus 178 ~l~g~~~~g~~l~v~~a~~~~~~~~~--~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~----G~v~~v~i~~~~~~tg 251 (292)
T 2ghp_A 178 KLNGLKIEGYTLVTKVSNPLEKSKRT--DSATLEGREIMIRNLSTELLDENLLRESFEGF----GSIEKINIPAGQKEHS 251 (292)
T ss_dssp HHTTCEETTEECEEEECCCC-----------CCTTTEEEEEEECTTTCCHHHHHHHHGGG----SCEEEEECCSCCC---
T ss_pred HhCCCEeCCcEEEEEECCCCcccccc--cccCCCCceEEEECCCcccCCHHHHHHHHhcc----CCeeEEEEEecCCcCC
Confidence 9999999999999998765433211 123456789999999999 9999999999999 9999999999866 59
Q ss_pred CCceEEEEEecCHHHHHHHHHhC
Q 015686 380 VGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 380 ~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.++|||||+|.++++|.+|| .|
T Consensus 252 ~~~g~afV~F~~~~~A~~A~-~l 273 (292)
T 2ghp_A 252 FNNCCAFMVFENKDSAERAL-QM 273 (292)
T ss_dssp CCCEEEEEEESSHHHHHHHG-GG
T ss_pred CCceEEEEEeCCHHHHHHHH-Hh
Confidence 99999999999999999998 53
No 18
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.93 E-value=4.2e-25 Score=211.67 Aligned_cols=152 Identities=24% Similarity=0.333 Sum_probs=125.4
Q ss_pred CCcccEEEEeCCCCcCcHHHHH----HHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhH
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLI----KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~----~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A 297 (402)
....++|||+|||+++++++|+ .+|+.||.|..|+|++ + +.++|||||+|.+.++|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~-----~---------------~~~~g~afV~f~~~~~a 65 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-----S---------------LKMRGQAFVIFKEVSSA 65 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC-----C---------------CCcceEEEEEECCHHHH
Confidence 3447999999999999999966 8999999999998842 1 23569999999999999
Q ss_pred HHHH-hccceEEcceeeccccCCCccccc---cC----------------------------------------------
Q 015686 298 EAAL-AFNMAVIGGNHIRLDRACPPRKKL---KG---------------------------------------------- 327 (402)
Q Consensus 298 ~~Al-~lng~~l~Gr~I~V~~a~~~~k~~---~~---------------------------------------------- 327 (402)
..|| .|||..|.|+.|.|.++....... .+
T Consensus 66 ~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (282)
T 3pgw_A 66 TNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMP 145 (282)
T ss_pred HHHHHHhcCCeeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCC
Confidence 9999 599999999999999875432100 00
Q ss_pred -----------------------------------------------------CCCCccCCcceeEecCCCCCCCHHHHH
Q 015686 328 -----------------------------------------------------EDAPLYDIKKTVFVGNLPFDVKDEEIY 354 (402)
Q Consensus 328 -----------------------------------------------------~~~~~~~~~~tLfV~NLp~~~teedL~ 354 (402)
.......+.++|||+|||..+++++|+
T Consensus 146 ~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 225 (282)
T 3pgw_A 146 PMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLS 225 (282)
T ss_pred cccccccccccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHH
Confidence 000122356889999999999999999
Q ss_pred HHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 355 QLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 355 ~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
++|+.| |.|..|+|+.+. +|||||+|.+.++|..||+.|
T Consensus 226 ~~F~~~----G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l 264 (282)
T 3pgw_A 226 MLFNQF----PGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDAL 264 (282)
T ss_pred HHHHhc----CCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHc
Confidence 999999 999999999762 689999999999999999865
No 19
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.93 E-value=5e-25 Score=206.17 Aligned_cols=149 Identities=17% Similarity=0.226 Sum_probs=124.4
Q ss_pred CcccEEEEeCCCC-cCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 223 KLLRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 223 ~~~~tVfVgNLP~-~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
...++|||+|||+ ++++++|+.+|+.||.|..|+|+..+ +|||||+|.+.++|..||
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----------------------~g~afV~F~~~~~A~~Ai 89 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----------------------KENALVQMADGNQAQLAM 89 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----------------------SCCEEEEESCHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----------------------CCEEEEEECCHHHHHHHH
Confidence 3478999999999 99999999999999999999984321 379999999999999999
Q ss_pred h-ccceEEcceeeccccCCCccccccC-------------------CC-------CCccCCcceeEecCCCCCCCHHHHH
Q 015686 302 A-FNMAVIGGNHIRLDRACPPRKKLKG-------------------ED-------APLYDIKKTVFVGNLPFDVKDEEIY 354 (402)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a~~~~k~~~~-------------------~~-------~~~~~~~~tLfV~NLp~~~teedL~ 354 (402)
. |||..|.|+.|.|.++......... .. .....+.++|||+|||..+++++|+
T Consensus 90 ~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~ 169 (229)
T 2adc_A 90 SHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 169 (229)
T ss_dssp HHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHH
T ss_pred HHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHH
Confidence 6 9999999999999988643110000 00 0113457899999999999999999
Q ss_pred HHhccCCCCCC-CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 355 QLFCGLNDLES-SVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 355 ~~F~~f~~~~G-~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
++|..| | .|..|+|+.+ ++|||||+|.+.++|.+||..|
T Consensus 170 ~~f~~~----G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l 209 (229)
T 2adc_A 170 VLFSSN----GGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDL 209 (229)
T ss_dssp HHHHTT----SCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHc----CCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHH
Confidence 999999 9 9999999764 4789999999999999999753
No 20
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.92 E-value=2.3e-25 Score=202.42 Aligned_cols=147 Identities=17% Similarity=0.242 Sum_probs=123.6
Q ss_pred ccEEEEeCCCC-cCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 225 LRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 225 ~~tVfVgNLP~-~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
+++|||+|||+ ++++++|+.+|+.||.|..|+|+.. .+|||||+|.+.++|..|+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~A~~~ 60 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN----------------------KKENALVQMADGNQAQLAMSH 60 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTT----------------------CSSCCEEECTTTHHHHHHHHH
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeC----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 58999999999 9999999999999999999988431 13799999999999999996
Q ss_pred ccceEEcceeeccccCCCccccccC--------------------------CCCCccCCcceeEecCCCCCCCHHHHHHH
Q 015686 303 FNMAVIGGNHIRLDRACPPRKKLKG--------------------------EDAPLYDIKKTVFVGNLPFDVKDEEIYQL 356 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~~~--------------------------~~~~~~~~~~tLfV~NLp~~~teedL~~~ 356 (402)
|||..|.|+.|.|.++......... .......+.++|||+|||..+++++|+++
T Consensus 61 l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 140 (198)
T 1qm9_A 61 LNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVL 140 (198)
T ss_dssp HTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHH
T ss_pred hCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHH
Confidence 9999999999999987643111000 00112345889999999999999999999
Q ss_pred hccCCCCCC-CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 357 FCGLNDLES-SVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 357 F~~f~~~~G-~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
|+.| | .|..|+|+.+ .+|||||+|.+.++|..||..|
T Consensus 141 f~~~----G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l 178 (198)
T 1qm9_A 141 FSSN----GGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDL 178 (198)
T ss_dssp HHHT----TSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHH
T ss_pred HHHc----CCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHh
Confidence 9999 9 9999999765 3799999999999999999753
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=8.1e-21 Score=159.63 Aligned_cols=108 Identities=17% Similarity=0.259 Sum_probs=70.4
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
..+|||+|||+++++++|+.+|++||.|.+|+|+++. . .++|||||+|.+.++|+.||. |
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~----~---------------~~kg~afV~f~~~~~A~~Ai~~l 65 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE----N---------------GSKGYGFVHFETQEAAERAIEKM 65 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET----T---------------EEEEEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC----C---------------CCCceEEEEECCHHHHHHHHHHc
Confidence 5789999999999999999999999999999996542 1 146899999999999999995 9
Q ss_pred cceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHH
Q 015686 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEE 352 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teed 352 (402)
||..|.|+.|.|.++.++...... .........+|||+|||+.+|++-
T Consensus 66 ~~~~~~g~~i~V~~a~~~~~~~~~-~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 66 NGMLLNDRKVFVGRFKSRKEREAE-LGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp TTCEETTEECEEEESSCCCC-----------------------------
T ss_pred CCCEECCEEEEEEECCCccccccc-cccccCCCCceEeCCCCCCccccc
Confidence 999999999999998754332211 112223456799999999998763
No 22
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.75 E-value=2.6e-18 Score=151.15 Aligned_cols=113 Identities=12% Similarity=0.107 Sum_probs=86.5
Q ss_pred CcceEEEEEeechhHHHHHh-ccce-EEcc------eeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHH
Q 015686 283 DSVHAYIVFKSEQSTEAALA-FNMA-VIGG------NHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIY 354 (402)
Q Consensus 283 skG~aFV~F~s~e~A~~Al~-lng~-~l~G------r~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~ 354 (402)
++|||||+|.+.++|++|+. +++. .+.| ............. ........+.++|||+|||+.+++++|+
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 88 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHH---HHHHMDVEGMTSLKVDNLTYRTSPDTLR 88 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCC---SSCCCCCCBCCEEEEESCCTTCCHHHHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccc---cccccCCCCCCEEEEeCCCCCCCHHHHH
Confidence 67999999999999999995 5542 2222 2222111111110 0112223457899999999999999999
Q ss_pred HHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 355 QLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 355 ~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
++|+.| |.|..|+|++|+.+|.++|||||+|.+.++|..||+.|
T Consensus 89 ~~F~~~----G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 132 (158)
T 2kn4_A 89 RVFEKY----GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 132 (158)
T ss_dssp HHHHHH----SCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHS
T ss_pred HHHHhc----CCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 999999 99999999999989999999999999999999999754
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.69 E-value=4.4e-17 Score=133.52 Aligned_cols=79 Identities=18% Similarity=0.315 Sum_probs=70.1
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
.++|||+|||+++|+++|+.+|++||.|.+|+|++++. + +.++|||||+|.+.++|+.|+. |
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--t---------------g~~kG~afV~f~~~~~A~~Ai~~l 81 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKV--A---------------GHSLGYGFVNYVTAKDAERAINTL 81 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSS--S---------------CCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCC--C---------------CcccccEEEEECCHHHHHHHHHHh
Confidence 57899999999999999999999999999999965431 1 2366999999999999999996 9
Q ss_pred cceEEcceeeccccCCC
Q 015686 304 NMAVIGGNHIRLDRACP 320 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~ 320 (402)
||..|.|+.|.|.++.|
T Consensus 82 ng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 82 NGLRLQSKTIKVSYARP 98 (99)
T ss_dssp TTCEETTEECEEEECCB
T ss_pred CCCEECCEEEEEEEeeC
Confidence 99999999999999853
No 24
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=3.2e-17 Score=133.66 Aligned_cols=98 Identities=21% Similarity=0.365 Sum_probs=80.8
Q ss_pred cEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-cc
Q 015686 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FN 304 (402)
Q Consensus 226 ~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-ln 304 (402)
++|||+|||+++++++|+.+|++||.|..|.|+.. ++|||||+|.+.++|..|+. ||
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~A~~~l~ 58 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----------------------PPGFAFVEFEDPRDAEDAVRGLD 58 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----------------------SSSEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----------------------CCCEEEEEECCHHHHHHHHHHHC
Confidence 47999999999999999999999999999998432 24899999999999999996 99
Q ss_pred ceEEcceeeccccCCCccccccCCC-CCccCCcceeEecCCC
Q 015686 305 MAVIGGNHIRLDRACPPRKKLKGED-APLYDIKKTVFVGNLP 345 (402)
Q Consensus 305 g~~l~Gr~I~V~~a~~~~k~~~~~~-~~~~~~~~tLfV~NLp 345 (402)
|..|.|+.|.|.++.++........ ........+|||+||+
T Consensus 59 g~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 59 GKVICGSRVRVELSTGMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp HSCSSSCCCEEEESSSCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCeECCcEEEEEEccCCCCcccCCCCCccccCCCceecCCCC
Confidence 9999999999999976654332222 1223346789999997
No 25
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.68 E-value=2.1e-17 Score=137.85 Aligned_cols=100 Identities=18% Similarity=0.274 Sum_probs=86.9
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..++|||+|||+++++++|+.+|+.||.|..|+|+.. +.++|||||+|.+.++|..|+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--------------------~~~~g~afV~f~~~~~A~~A~~~ 66 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--------------------PETRGTAYVVYEDIFDAKNAVDH 66 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--------------------TTTTTCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--------------------CCCCcEEEEEECCHHHHHHHHHH
Confidence 4689999999999999999999999999999998532 1246899999999999999997
Q ss_pred ccceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccC
Q 015686 303 FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGL 360 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f 360 (402)
|||..|.|+.|.|.++.++... ++++...++++|..+|+.|
T Consensus 67 l~g~~~~g~~l~v~~a~~~~~~-----------------~~~~~~~~~~~l~~~~~~~ 107 (115)
T 3lqv_A 67 LSGFNVSNRYLVVLYYNANRAF-----------------QKMDTKKKEEQLKLLKEKY 107 (115)
T ss_dssp HTTCBSSSCBCEEEECCHHHHT-----------------TTSCHHHHHHHHHHHHHHH
T ss_pred cCCCEECCeEEEEEEecCChhh-----------------hhhhHhHhHHHHHHHHHHh
Confidence 9999999999999998754321 5677778899999999999
No 26
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.67 E-value=4.9e-17 Score=142.20 Aligned_cols=109 Identities=17% Similarity=0.132 Sum_probs=92.0
Q ss_pred CcceEEEEEeechhHHHHHh-c-cceEEcceeeccccCCCcccccc-------CCCCCccCCcceeEecCCCCCCCHHHH
Q 015686 283 DSVHAYIVFKSEQSTEAALA-F-NMAVIGGNHIRLDRACPPRKKLK-------GEDAPLYDIKKTVFVGNLPFDVKDEEI 353 (402)
Q Consensus 283 skG~aFV~F~s~e~A~~Al~-l-ng~~l~Gr~I~V~~a~~~~k~~~-------~~~~~~~~~~~tLfV~NLp~~~teedL 353 (402)
-+|+++|+|.+.+.|++|+. + ||..+.| .|.+..+........ ........+.++|||+|||+.+++++|
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l 90 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTEL 90 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHH
T ss_pred ccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHH
Confidence 46899999999999999995 8 9999999 999998765321110 111233456799999999999999999
Q ss_pred HHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 354 YQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 354 ~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
+++|+.| |.|..|+|+++ ++|||||+|.+.++|..||..
T Consensus 91 ~~~F~~~----G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~ 129 (150)
T 2i2y_A 91 ERAFGYY----GPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRE 129 (150)
T ss_dssp HHHHHHH----SCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHH
T ss_pred HHHHHhh----CCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHH
Confidence 9999999 99999999987 689999999999999999974
No 27
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.66 E-value=8.8e-17 Score=129.55 Aligned_cols=81 Identities=14% Similarity=0.209 Sum_probs=68.8
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcC-CeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFG-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G-~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
+++|||+|||+++|+++|+.+|++|| .|.+|+|++++ .+ +.++|||||+|.+.++|+.||.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~--~t---------------~~~rg~aFV~F~~~~~A~~Ai~~ 63 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNK--SS---------------GQSRGFAFVEFSHLQDATRWMEA 63 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCS--SS---------------CCCSSEEEEECSSHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecC--CC---------------CCcCceEEEEecCHHHHHHHHHh
Confidence 36899999999999999999999999 89998885432 11 3367999999999999999996
Q ss_pred c-cceEEcceeeccccCCCcc
Q 015686 303 F-NMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 303 l-ng~~l~Gr~I~V~~a~~~~ 322 (402)
+ |+..|.|+.|.|.++.++.
T Consensus 64 ~~~~~~~~gr~i~V~~a~~~~ 84 (91)
T 2lxi_A 64 NQHSLNILGQKVSMHYSDPKP 84 (91)
T ss_dssp TTTEEEETTEEEEEECCCSCC
T ss_pred cCCCeEECCEEEEEEEcCCCC
Confidence 5 5678999999999997654
No 28
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.64 E-value=5.5e-16 Score=122.73 Aligned_cols=79 Identities=30% Similarity=0.416 Sum_probs=69.4
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|++||.|..|+|+..+. + +.++|||||+|.+.++|..||.
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------g~~~g~afV~f~~~~~a~~A~~ 71 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPN--T---------------GRSRGFGFILFKDAASVEKVLD 71 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTT--T---------------CCEEEEEEEEESSTHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCC--C---------------CccccEEEEEECCHHHHHHHHH
Confidence 4478999999999999999999999999999999865431 1 2356999999999999999999
Q ss_pred ccceEEcceeeccccC
Q 015686 303 FNMAVIGGNHIRLDRA 318 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a 318 (402)
+++..|.|+.|.|.+|
T Consensus 72 ~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 72 QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SSCEEETTEEEEEEEC
T ss_pred hCCCEECCEEEEEEeC
Confidence 8999999999999764
No 29
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.64 E-value=3.4e-16 Score=130.75 Aligned_cols=81 Identities=21% Similarity=0.279 Sum_probs=71.8
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
+.++|||+|||+++++++|+++|++||.|.+|+|++++. + +.++|||||+|.+.++|+.||.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~--t---------------g~~rG~aFV~f~~~~~A~~Ai~~ 67 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPR--T---------------RKHLGLARVLFTSTRGAKETVKN 67 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT--T---------------CCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCC--C---------------CceeeEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999976432 1 2367999999999999999996
Q ss_pred ccceEEcceeeccccCCCc
Q 015686 303 FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~ 321 (402)
|||..|.|+.|.|.++...
T Consensus 68 lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 68 LHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp HTTCEETTEECEEEECSTT
T ss_pred hCCCEECCeEEEEEECCCC
Confidence 9999999999999998644
No 30
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6.7e-16 Score=125.34 Aligned_cols=84 Identities=26% Similarity=0.395 Sum_probs=73.1
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|+.||.|..|+|+..+. + +.++|||||+|.+.++|+.||.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAE--K---------------QRPRGFGFITFEDEQSVDQAVN 70 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTT--T---------------CSCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC--C---------------CCCCceEEEEECCHHHHHHHHH
Confidence 3478999999999999999999999999999999854321 1 2356999999999999999999
Q ss_pred ccceEEcceeeccccCCCccc
Q 015686 303 FNMAVIGGNHIRLDRACPPRK 323 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k 323 (402)
||+..|.|+.|.|.++.++..
T Consensus 71 ~~~~~~~g~~l~V~~a~~~~~ 91 (99)
T 2dgs_A 71 MHFHDIMGKKVEVKRAEPRDS 91 (99)
T ss_dssp HCCCBSSSCBCEEEECCCCCC
T ss_pred hCCCEECCeEEEEEECCCCcc
Confidence 999999999999999976543
No 31
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1e-15 Score=124.16 Aligned_cols=84 Identities=17% Similarity=0.232 Sum_probs=72.6
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH-
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al- 301 (402)
...++|||+|||+++++++|+.+|+.||.|..|+|+..+. + +.++|||||+|.+.++|..||
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~A~~ 68 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSL--T---------------KKPKGFAFVTFMFPEHAVKAYA 68 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTT--T---------------CCCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCC--C---------------CCcCeEEEEEECCHHHHHHHHH
Confidence 3478999999999999999999999999999998854321 1 236699999999999999999
Q ss_pred hccceEEcceeeccccCCCccc
Q 015686 302 AFNMAVIGGNHIRLDRACPPRK 323 (402)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k 323 (402)
.|||..|.|+.|.|.++.++..
T Consensus 69 ~l~g~~~~g~~l~V~~a~~~~~ 90 (99)
T 1whw_A 69 EVDGQVFQGRMLHVLPSTIKKE 90 (99)
T ss_dssp HTTTEESSSCEEEEEECCCCST
T ss_pred HhCCCEECCcEEEEEEcCCCcc
Confidence 5999999999999999976543
No 32
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.63 E-value=6.2e-16 Score=130.08 Aligned_cols=83 Identities=24% Similarity=0.338 Sum_probs=72.8
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..++|||+|||+++++++|+.+|+.||.|..|.|+... + +.++|||||+|.+.++|+.||.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~---------------g~~~g~afV~F~~~~~A~~Ai~~ 67 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR---T---------------SKSRGFAFITFENPADAKNAAKD 67 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST---T---------------TTCCCEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC---C---------------CCcccEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999985432 1 2366999999999999999996
Q ss_pred ccceEEcceeeccccCCCcccc
Q 015686 303 FNMAVIGGNHIRLDRACPPRKK 324 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~ 324 (402)
|||..|.|+.|.|.++..+...
T Consensus 68 l~g~~~~g~~l~V~~a~~~~~~ 89 (116)
T 2fy1_A 68 MNGKSLHGKAIKVEQAKKPSFQ 89 (116)
T ss_dssp CSSCBCSSSBCEEEECCCSSCS
T ss_pred hCCCEECCEEEEEEECCCCCCC
Confidence 9999999999999999866543
No 33
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.63 E-value=7.4e-16 Score=122.21 Aligned_cols=79 Identities=24% Similarity=0.392 Sum_probs=70.5
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhcc
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ln 304 (402)
.++|||+|||+++++++|+.+|+.||.|..++|+..+. + +.++|||||+|.+.++|..|+.+|
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~a~~~~ 68 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKF--S---------------GHPKGFAYIEFSDKESVRTSLALD 68 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCS--S---------------SSCCEEEEEEESSTHHHHHHGGGT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCC--C---------------CCcceEEEEEECCHHHHHHHHhcC
Confidence 58999999999999999999999999999999865321 1 235699999999999999999999
Q ss_pred ceEEcceeeccccCCC
Q 015686 305 MAVIGGNHIRLDRACP 320 (402)
Q Consensus 305 g~~l~Gr~I~V~~a~~ 320 (402)
|..|.|+.|.|.++.+
T Consensus 69 g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 69 ESLFRGRQIKVIPKRT 84 (89)
T ss_dssp TCEETTEECEEEETTT
T ss_pred CCEECCcEEEEEEccC
Confidence 9999999999999864
No 34
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.2e-16 Score=125.70 Aligned_cols=85 Identities=24% Similarity=0.371 Sum_probs=73.3
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
....++|||+|||+++++++|+.+|++||.|..|+|+..+. + +.++|||||+|.+.++|+.||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~A~ 74 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRV--T---------------GQHQGYGFVEFLSEEDADYAI 74 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSS--S---------------CSBCSCEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--C---------------CcCCcEEEEEECCHHHHHHHH
Confidence 34578999999999999999999999999999998854321 1 236699999999999999999
Q ss_pred h-ccceEEcceeeccccCCCccc
Q 015686 302 A-FNMAVIGGNHIRLDRACPPRK 323 (402)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a~~~~k 323 (402)
. ||+..|.|+.|.|.++.++..
T Consensus 75 ~~l~g~~~~g~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 75 KIMDMIKLYGKPIRVNKASAHNK 97 (105)
T ss_dssp HHSSSCBCSSCBCEEEETTTTSC
T ss_pred HHhCCCeECCeEEEEEECCCCCc
Confidence 7 999999999999999976543
No 35
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8e-16 Score=127.92 Aligned_cols=77 Identities=18% Similarity=0.357 Sum_probs=68.2
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|++||.|.+|+|++ .+|||||+|.+.++|..|+.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~-----------------------~kGfaFVeF~~~~~A~~Ai~ 70 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-----------------------GKNQAFIEMNTEEAANTMVN 70 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 3478999999999999999999999999999999842 24899999999999999996
Q ss_pred -cc--ceEEcceeeccccCCCcc
Q 015686 303 -FN--MAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 303 -ln--g~~l~Gr~I~V~~a~~~~ 322 (402)
|+ +..|.|+.|.|.++.++.
T Consensus 71 ~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 71 YYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp HHTTSCCEETTEECCBCCCSSSS
T ss_pred HhccCCceECCEEEEEEEcCCCC
Confidence 65 579999999999997654
No 36
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.63 E-value=8.7e-16 Score=120.22 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=70.0
Q ss_pred cEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-cc
Q 015686 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FN 304 (402)
Q Consensus 226 ~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-ln 304 (402)
.+|||+|||+++++++|+.+|+.||.|..++|+..+. + +.++|||||+|.+.++|+.|+. ||
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~a~~~l~ 64 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ--T---------------GSSRGYGFVSFTSQDDAQNAMDSMQ 64 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTT--T---------------CCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC--C---------------CCccceEEEEECCHHHHHHHHHHhc
Confidence 5899999999999999999999999999999865431 1 2356999999999999999996 99
Q ss_pred ceEEcceeeccccCCCc
Q 015686 305 MAVIGGNHIRLDRACPP 321 (402)
Q Consensus 305 g~~l~Gr~I~V~~a~~~ 321 (402)
|..|.|+.|.|.++.++
T Consensus 65 g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 65 GQDLNGRPLRINWAAKL 81 (83)
T ss_dssp TCEETTEECEEEECCCC
T ss_pred CCeeCCcEEEEEecCcC
Confidence 99999999999998754
No 37
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.4e-16 Score=129.37 Aligned_cols=78 Identities=12% Similarity=0.126 Sum_probs=69.6
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhc
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~l 303 (402)
..++|||+|||+++|+++|+.+|++||.|.+|+|++++. +.++|||||+|.+.++|..||.+
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~------------------g~~rG~aFV~F~~~e~a~~Ai~~ 71 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH------------------KAFKGSIFVVFDSIESAKKFVET 71 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT------------------TSCCCEEEEEESSHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC------------------CCCccEEEEEECCHHHHHHHHHc
Confidence 368999999999999999999999999999999965331 23679999999999999999999
Q ss_pred cceEEcceeeccccCC
Q 015686 304 NMAVIGGNHIRLDRAC 319 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~ 319 (402)
||..|.|+.|.|.++.
T Consensus 72 ~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 72 PGQKYKETDLLILFKD 87 (103)
T ss_dssp SCCCCTTTTCEEEEHH
T ss_pred CCCEECCEEEEEEEch
Confidence 9999999999998764
No 38
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.62 E-value=5.1e-16 Score=122.75 Aligned_cols=81 Identities=21% Similarity=0.376 Sum_probs=70.5
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
.++|||+|||+++++++|+.+|++||.|..+.|+..+... +.++|||||+|.+.++|..|+. |
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~----------------~~~~g~afV~f~~~~~a~~A~~~l 67 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHP----------------HLSKGYAYVEFENPDEAEKALKHM 67 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEE----------------EEECSEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCC----------------CCCCcEEEEEEecHHHHHHHHHHc
Confidence 6899999999999999999999999999999886543211 1256899999999999999997 9
Q ss_pred cceEEcceeeccccCCCc
Q 015686 304 NMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~ 321 (402)
||..|.|+.|.|.++.++
T Consensus 68 ~g~~~~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 68 DGGQIDGQEITATAVLAP 85 (88)
T ss_dssp TTCEETTEECEEEEECCC
T ss_pred CCCeECCeEEEEEECCCC
Confidence 999999999999998654
No 39
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.7e-15 Score=123.81 Aligned_cols=82 Identities=24% Similarity=0.408 Sum_probs=72.0
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|+.||.|..|+|+..+ . .++|||||+|.+.++|..||.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~----~---------------~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH----T---------------SNDPYCFVEFYEHRDAAAALA 73 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC----C---------------SSCCEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC----C---------------CCCCEEEEEECCHHHHHHHHH
Confidence 447999999999999999999999999999999985532 1 145899999999999999997
Q ss_pred -ccceEEcceeeccccCCCccc
Q 015686 303 -FNMAVIGGNHIRLDRACPPRK 323 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~~k 323 (402)
||+..|.|+.|.|.++.++..
T Consensus 74 ~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2cqi_A 74 AMNGRKILGKEVKVNWATTPSS 95 (103)
T ss_dssp HHTTEEETTEEEEEEECCCTTC
T ss_pred HhCCCCcCCCeEEEEECCCCcc
Confidence 999999999999999976543
No 40
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.62 E-value=6.2e-16 Score=122.14 Aligned_cols=80 Identities=23% Similarity=0.367 Sum_probs=69.7
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..++|||+|||+++++++|+.+|++||.|.+|+|+..+. + +.++|||||+|.+.++|..|+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMA--T---------------GKSKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT--T---------------CCEEEEEEEEESSHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCC--C---------------CccceEEEEEECCHHHHHHHHHH
Confidence 368999999999999999999999999999999865321 1 2356999999999999999996
Q ss_pred ccceEEcceeeccccCCC
Q 015686 303 FNMAVIGGNHIRLDRACP 320 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~ 320 (402)
|||..|.|+.|.|.++.+
T Consensus 68 l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 68 MGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp HTTCEETTEECEEEEEC-
T ss_pred cCCCEECCeEEEEEecCC
Confidence 999999999999998864
No 41
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.62 E-value=7.5e-16 Score=121.14 Aligned_cols=78 Identities=29% Similarity=0.445 Sum_probs=68.8
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..++|||+|||+++++++|+.+|++||.|..|+|+..+. + +.++|||||+|.+.++|..|+.
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~A~~~ 68 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE--T---------------EKHRGFAFVEFELAEDAAAAIDN 68 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETT--T---------------TEECSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCC--C---------------CccccEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999998865431 1 2256999999999999999995
Q ss_pred ccceEEcceeeccccC
Q 015686 303 FNMAVIGGNHIRLDRA 318 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a 318 (402)
|||..|.|+.|.|.++
T Consensus 69 l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 69 MNESELFGRTIRVNLA 84 (85)
T ss_dssp HTTCEETTEECEEEEC
T ss_pred hCCCEECCcEEEEEEc
Confidence 9999999999999876
No 42
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=124.67 Aligned_cols=83 Identities=27% Similarity=0.370 Sum_probs=72.1
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|+.||.|..|.|+..+. + +.++|||||+|.+.++|+.||.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~A~~A~~ 73 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPH--T---------------KAPRGFAFVRFHDRRDAQDAEA 73 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSS--S---------------CSBCSCEEEEESSSSHHHHHHH
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC--C---------------CCCCeEEEEEECCHHHHHHHHH
Confidence 3478999999999999999999999999999998854321 1 2356999999999999999997
Q ss_pred -ccceEEcceeeccccCCCcc
Q 015686 303 -FNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~~ 322 (402)
|||..|.|+.|.|.++....
T Consensus 74 ~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dnm_A 74 AMDGAELDGRELRVQVARYGR 94 (103)
T ss_dssp HHSSCCBTTBCCEEEECSSCC
T ss_pred HcCCCEECCcEEEEEECCcCC
Confidence 99999999999999987543
No 43
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.62 E-value=1e-15 Score=123.72 Aligned_cols=81 Identities=16% Similarity=0.335 Sum_probs=70.9
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
+++|||+|||+++++++|+.+|++||.|..|+|+..+. + +.++|||||+|.+.++|..|+. |
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------g~~~g~afV~f~~~~~A~~Ai~~l 64 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQ--T---------------GRSKGYAFIEFRDLESSASAVRNL 64 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTT--T---------------CCBCSEEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC--C---------------CccceEEEEEECCHHHHHHHHHHh
Confidence 58999999999999999999999999999998854321 1 2367999999999999999995 9
Q ss_pred cceEEcceeeccccCCCcc
Q 015686 304 NMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~ 322 (402)
||..|.|+.|.|.++.++.
T Consensus 65 ~g~~~~g~~l~V~~a~~~~ 83 (96)
T 2x1f_A 65 NGYQLGSRFLKCGYSSNSD 83 (96)
T ss_dssp TTCEETTEECEEEECSCSS
T ss_pred CCCeECCeEEEEEEcCCCC
Confidence 9999999999999997653
No 44
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2e-15 Score=123.70 Aligned_cols=84 Identities=29% Similarity=0.402 Sum_probs=72.1
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhc
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~l 303 (402)
..++|||+|||+++++++|+.+|+.|| |..|+|+..+. + .+.++|||||+|.+.++|+.||.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~--~--------------~g~~~g~afV~f~~~~~a~~A~~l 76 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPS--N--------------PERLKGFGYAEFEDLDSLLSALSL 76 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSS--C--------------TTSBCSCEEEEESSHHHHHHHHGG
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCC--C--------------CCCcCeEEEEEECCHHHHHHHHhc
Confidence 368999999999999999999999999 99998854321 1 023679999999999999999999
Q ss_pred cceEEcceeeccccCCCcccc
Q 015686 304 NMAVIGGNHIRLDRACPPRKK 324 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~ 324 (402)
|+..|.|+.|.|.++.++...
T Consensus 77 ~g~~~~g~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 77 NEESLGNKRIRVDVADQAQDK 97 (104)
T ss_dssp GTCEETTEECEEEECCCCCCC
T ss_pred CCCEeCCcEEEEEEccCCCCC
Confidence 999999999999999765443
No 45
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.5e-15 Score=122.76 Aligned_cols=82 Identities=20% Similarity=0.344 Sum_probs=72.0
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
....++|||+|||+++++++|+.+|+.||.|..|+|+..+ .. ++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~----~~---------------~~g~afV~f~~~~~a~~A~ 72 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE----RG---------------SKGFGFVTFENSADADRAR 72 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT----TT---------------TCCEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC----CC---------------CcEEEEEEECCHHHHHHHH
Confidence 3457999999999999999999999999999999985432 11 4589999999999999999
Q ss_pred h-ccceEEcceeeccccCCCcc
Q 015686 302 A-FNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a~~~~ 322 (402)
. ||+..|.|+.|.|.++.++.
T Consensus 73 ~~l~g~~~~g~~l~v~~a~~~~ 94 (103)
T 2cq3_A 73 EKLHGTVVEGRKIEVNNATARV 94 (103)
T ss_dssp HHHTTCEETTEECEEEECCSSC
T ss_pred HHhCCCEECCEEEEEEEcccCC
Confidence 6 99999999999999997654
No 46
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=121.78 Aligned_cols=79 Identities=25% Similarity=0.357 Sum_probs=69.1
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|++||.|..|+|+..+. + +.++|||||+|.+.++|..|+.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~A~~A~~ 76 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKD--T---------------RKSKGVAFILFLDKDSAQNCTR 76 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSS--S---------------CCCTTCEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC--C---------------CCcccEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999999999999854321 1 2356999999999999999995
Q ss_pred -ccceEEcceeeccccC
Q 015686 303 -FNMAVIGGNHIRLDRA 318 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a 318 (402)
|||..|.|+.|.|.++
T Consensus 77 ~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 77 AINNKQLFGRVIKASIA 93 (94)
T ss_dssp HTTTEEETTEEEEEEEC
T ss_pred HcCCCeeCCcEEEEEec
Confidence 9999999999999886
No 47
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=122.95 Aligned_cols=82 Identities=29% Similarity=0.372 Sum_probs=71.7
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEE-EEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSV-RIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~v-ri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
..++|||+|||+++++++|+.+|+.||.|..+ +|+..+ .+ +.++|||||+|.+.++|+.||.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~--~~---------------g~~~g~afV~f~~~~~A~~A~~ 66 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDP--DT---------------GNSKGYAFINFASFDASDAAIE 66 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCT--TT---------------CSCCSEEEEEBSSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcC--CC---------------CCcCeEEEEEECCHHHHHHHHH
Confidence 46899999999999999999999999999998 885432 11 2366999999999999999997
Q ss_pred -ccceEEcceeeccccCCCcc
Q 015686 303 -FNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~~ 322 (402)
|||..|.|+.|.|.++.++.
T Consensus 67 ~l~g~~~~g~~l~v~~a~~~~ 87 (96)
T 1x5t_A 67 AMNGQYLCNRPITVSYAFKKD 87 (96)
T ss_dssp TTTTCEETTEECEEEESCCCC
T ss_pred HcCCCEECCEEEEEEEecccC
Confidence 99999999999999997654
No 48
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=123.67 Aligned_cols=81 Identities=17% Similarity=0.277 Sum_probs=71.5
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|+.||.|..|+|+..+ + +.++|||||+|.+.++|..||.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~---------------g~~~g~afV~f~~~~~a~~A~~ 76 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR---A---------------GKPKGLAYVEYENESQASQAVM 76 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT---T---------------SCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC---C---------------CCEEeEEEEEECCHHHHHHHHH
Confidence 446899999999999999999999999999999986532 1 2356999999999999999995
Q ss_pred -ccceEEcceeeccccCCCc
Q 015686 303 -FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~ 321 (402)
|||..|.|+.|.|.++.++
T Consensus 77 ~l~g~~~~g~~l~v~~a~~~ 96 (100)
T 2do4_A 77 KMDGMTIKENIIKVAISNSG 96 (100)
T ss_dssp HHTTEESSSCEEEEEECCCC
T ss_pred HhCCCEECCEEEEEEECCCC
Confidence 9999999999999998764
No 49
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=124.47 Aligned_cols=85 Identities=31% Similarity=0.441 Sum_probs=73.0
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|+.||.|..|+|+..+. + +.++|||||+|.+.++|+.||.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~A~~A~~ 72 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE--T---------------EKHRGFAFVEFELAEDAAAAID 72 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSS--S---------------CCCSSEEEECCSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCC--C---------------CCcceEEEEEECCHHHHHHHHH
Confidence 3478999999999999999999999999999998854321 1 2356999999999999999995
Q ss_pred -ccceEEcceeeccccCCCcccc
Q 015686 303 -FNMAVIGGNHIRLDRACPPRKK 324 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~~k~ 324 (402)
|||..|.|+.|.|.++.++...
T Consensus 73 ~l~g~~~~g~~l~V~~a~~~~~~ 95 (102)
T 2cqb_A 73 NMNESELFGRTIRVNLAKPMRIK 95 (102)
T ss_dssp HHTTEEETTEEEEEEECCCCCCC
T ss_pred HhCCCEECCcEEEEEeCCCCCCC
Confidence 9999999999999999765433
No 50
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.61 E-value=2.4e-16 Score=126.19 Aligned_cols=79 Identities=14% Similarity=0.194 Sum_probs=65.9
Q ss_pred cEEEEeCCCCcCcHHHHHHHhhhcC--CeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 226 RTIFVGNLPLKVKKKTLIKEFIKFG--EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 226 ~tVfVgNLP~~vtee~L~~~F~~~G--~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
.+|||+|||+++++++|+.+|+.|| .|.+++|+.++. + ++++|||||+|.+.++|..||.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~--~---------------g~~kG~afV~f~~~~~a~~Ai~~ 64 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRA--N---------------GQSKGFALVGVGSEASSKKLMDL 64 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTT--T---------------CCEEEEEEECC-CHHHHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCC--C---------------CccCcEEEEEECCHHHHHHHHHH
Confidence 5799999999999999999999999 999999865431 1 3367999999999999999995
Q ss_pred ccceEEcceeeccccCCCc
Q 015686 303 FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~ 321 (402)
|||..|.|+.|.|.++.++
T Consensus 65 l~g~~~~gr~i~V~~~~~~ 83 (90)
T 3p5t_L 65 LPKRELHGQNPVVTPSNKL 83 (90)
T ss_dssp GGGSCSSSCCCEECCC---
T ss_pred cCCCeeCCEEEEEEECCCC
Confidence 9999999999999998764
No 51
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=121.75 Aligned_cols=82 Identities=21% Similarity=0.323 Sum_probs=72.0
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..++|||+|||+++++++|+.+|++||.|..|+|+..+. + +.++|||||+|.+.++|..||.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~A~~~ 66 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSD--T---------------GRSKGYGFITFSDSECARRALEQ 66 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSS--S---------------CCCCSEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCC--C---------------CceeeEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999865321 1 2356999999999999999997
Q ss_pred ccceEEcceeeccccCCCcc
Q 015686 303 FNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~ 322 (402)
|||..|.|+.|.|.++.++.
T Consensus 67 l~g~~~~g~~l~V~~a~~~~ 86 (95)
T 2dnz_A 67 LNGFELAGRPMRVGHVTERL 86 (95)
T ss_dssp HTTCCSSSSCCEEEESSCCC
T ss_pred hCCCeeCCcEEEEEEccccc
Confidence 99999999999999987653
No 52
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.9e-15 Score=121.22 Aligned_cols=81 Identities=21% Similarity=0.228 Sum_probs=70.9
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
+...++|||+|||+++++++|+.+|+.||.|..|.|+..+. + +.++|||||+|.+.++|+.||
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~A~~A~ 74 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ--S---------------RRSRGFAFVYFENVDDAKEAK 74 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSS--S---------------SSEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC--C---------------CCcccEEEEEECCHHHHHHHH
Confidence 34478999999999999999999999999999999865432 1 225699999999999999999
Q ss_pred h-ccceEEcceeeccccCC
Q 015686 302 A-FNMAVIGGNHIRLDRAC 319 (402)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a~ 319 (402)
. |||..|.|+.|.|.++.
T Consensus 75 ~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 75 ERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp HHHTTEEETTEEEEEECCS
T ss_pred HHhCCCEECCEEEEEEecC
Confidence 6 99999999999999875
No 53
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.4e-15 Score=124.37 Aligned_cols=84 Identities=21% Similarity=0.228 Sum_probs=73.0
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
....++|||+|||+++++++|+.+|+.||.|..|+|+..+. + +.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~A~~A~ 74 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKT--T---------------GQSKGFAFISFHRREDAARAI 74 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSS--S---------------CSEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCC--C---------------CceeeEEEEEECCHHHHHHHH
Confidence 34478999999999999999999999999999999865321 1 235699999999999999999
Q ss_pred h-ccceEEcceeeccccCCCcc
Q 015686 302 A-FNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a~~~~ 322 (402)
. |||..|.|+.|.|.++.++.
T Consensus 75 ~~l~g~~~~g~~l~v~~a~~~~ 96 (103)
T 2cq0_A 75 AGVSGFGYDHLILNVEWAKPST 96 (103)
T ss_dssp HHTTTCEETTEECEEEESSCCC
T ss_pred HHcCCCeeCCcEEEEEECCCCC
Confidence 7 99999999999999987653
No 54
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.61 E-value=3.7e-15 Score=124.22 Aligned_cols=85 Identities=21% Similarity=0.328 Sum_probs=73.4
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
....++|||+|||+++++++|+.+|+.||.|..|+|+..+. + +.++|||||+|.+.++|+.||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~A~ 74 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMA--T---------------GKSKGYGFVSFFNKWDAENAI 74 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT--T---------------CCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC--C---------------CCcceEEEEEECCHHHHHHHH
Confidence 34478999999999999999999999999999999965321 1 235699999999999999999
Q ss_pred h-ccceEEcceeeccccCCCccc
Q 015686 302 A-FNMAVIGGNHIRLDRACPPRK 323 (402)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a~~~~k 323 (402)
. |||..|.|+.|.|.++.++..
T Consensus 75 ~~l~g~~~~g~~l~V~~a~~~~~ 97 (115)
T 2dgo_A 75 QQMGGQWLGGRQIRTNWATRKPP 97 (115)
T ss_dssp HHTTTCEETTEECEEEESSCCCC
T ss_pred HHhCCCEECCEEEEEEEccCCCC
Confidence 6 999999999999999976543
No 55
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.2e-15 Score=124.46 Aligned_cols=84 Identities=21% Similarity=0.344 Sum_probs=72.5
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
....++|||+|||+++++++|+.+|..||.|..|+|+..+. + +.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------g~~~g~afV~f~~~~~A~~A~ 74 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPD--T---------------EHSKGCAFAQFMTQEAAQKCL 74 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSS--S---------------CCBCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--C---------------CCCccEEEEEECCHHHHHHHH
Confidence 34478999999999999999999999999999999855321 1 235699999999999999999
Q ss_pred h-cc------ceEEcceeeccccCCCcc
Q 015686 302 A-FN------MAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 302 ~-ln------g~~l~Gr~I~V~~a~~~~ 322 (402)
. || +..|.|+.|.|.++.++.
T Consensus 75 ~~~~~~~~~~~~~~~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 75 AAASLEAEGGGLKLDGRQLKVDLAVTRD 102 (111)
T ss_dssp HHHCTTTTTCCEESSSCEEEEECCCCCC
T ss_pred HHhccccccCCcEEcCEEEEEEECCCCc
Confidence 6 98 999999999999997654
No 56
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.61 E-value=7e-16 Score=125.80 Aligned_cols=79 Identities=16% Similarity=0.279 Sum_probs=66.9
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCC--eeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGE--IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~--I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
.-.||||+|||+++|+++|+++|++||. |.+|+|++++. + ++++|||||+|.+.++|+.||
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~--t---------------g~srG~aFV~f~~~~~A~~Ai 70 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQ--T---------------QQNRGFAFVQLSSAMDASQLL 70 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSS--S---------------SSCSSEEEEECSSSHHHHHHH
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCC--C---------------CCCceEeEEEECCHHHHHHHH
Confidence 3678999999999999999999999995 56787754321 1 346799999999999999999
Q ss_pred h-ccce----EEcceeeccccCC
Q 015686 302 A-FNMA----VIGGNHIRLDRAC 319 (402)
Q Consensus 302 ~-lng~----~l~Gr~I~V~~a~ 319 (402)
. |||. .|+||.|.|.++.
T Consensus 71 ~~lng~~~~~~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 71 QILQSLHPPLKIDGKTIGVDFAK 93 (95)
T ss_dssp HHHHSSSSCEEETTEEEEEEECC
T ss_pred HHhcCCCCCceECCEEEEEEEcc
Confidence 6 8885 6999999999985
No 57
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.7e-15 Score=124.01 Aligned_cols=80 Identities=23% Similarity=0.407 Sum_probs=70.3
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH-
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al- 301 (402)
...++|||+|||+++++++|+.+|++||.|..|+|+.. +.++|||||+|.+.++|+.||
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--------------------~~~~g~afV~f~~~~~A~~A~~ 79 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--------------------RGGPPFAFVEFEDPRDAEDAVY 79 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--------------------SSSSCCEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--------------------CCCCcEEEEEECCHHHHHHHHH
Confidence 34689999999999999999999999999999988321 124689999999999999999
Q ss_pred hccceEEcceeeccccCCCcc
Q 015686 302 AFNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~ 322 (402)
.||+..|.|+.|.|.++.+..
T Consensus 80 ~l~g~~~~g~~l~V~~a~~~~ 100 (109)
T 1x4a_A 80 GRDGYDYDGYRLRVEFPRSGR 100 (109)
T ss_dssp HHTTCEETTEECEEECCCCCC
T ss_pred HcCCCEECCeEEEEEEcccCC
Confidence 599999999999999997654
No 58
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.8e-15 Score=122.37 Aligned_cols=85 Identities=18% Similarity=0.231 Sum_probs=72.5
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..++|||+|||+++++++|+.+|+.||.|..|+|+..+.. .+ .+.++|||||+|.+.++|..||.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~g-------------t~~~~g~afV~f~~~~~a~~A~~~ 69 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNK-AG-------------VLLSMGFGFVEYKKPEQAQKALKQ 69 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECT-TC-------------CEEEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CC-------------CcCcccEEEEEECCHHHHHHHHHH
Confidence 4689999999999999999999999999999999664320 00 11356999999999999999997
Q ss_pred ccceEEcceeeccccCCCcc
Q 015686 303 FNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~ 322 (402)
|||..|.|+.|.|.++.+..
T Consensus 70 l~g~~~~g~~l~V~~a~~~~ 89 (98)
T 2cpf_A 70 LQGHTVDGHKLEVRISERAT 89 (98)
T ss_dssp STTCEETTEECEEECSSCSS
T ss_pred hCCCeeCCeEEEEEEccCCC
Confidence 99999999999999997654
No 59
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.6e-15 Score=123.11 Aligned_cols=84 Identities=23% Similarity=0.334 Sum_probs=73.0
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|+.||.|..|+|+..+. + +.++|||||+|.+.++|+.||.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~--~---------------g~~~g~afV~f~~~~~a~~a~~ 76 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKT--T---------------NQSRGFGFVKFKDPNCVGTVLA 76 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSS--S---------------CCEEEEEEEEESSTTHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC--C---------------CCcceEEEEEECCHHHHHHHHH
Confidence 3478999999999999999999999999999999865431 1 2356999999999999999997
Q ss_pred ccceEEcceeeccccCCCccc
Q 015686 303 FNMAVIGGNHIRLDRACPPRK 323 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k 323 (402)
.|+..|.|+.|.|.++.++..
T Consensus 77 ~~~~~~~g~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 77 SRPHTLDGRNIDPKPCTPRGM 97 (105)
T ss_dssp HCSEEETTEEEBCCCSCCSSC
T ss_pred hCCCeECCEEEEEEEccCCCC
Confidence 799999999999999976543
No 60
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.61 E-value=2e-15 Score=125.50 Aligned_cols=85 Identities=21% Similarity=0.327 Sum_probs=69.9
Q ss_pred CCCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHH
Q 015686 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (402)
Q Consensus 221 e~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~A 300 (402)
.+...++|||+|||+++++++|+.+|+.||.|..|+|+..+ .+ +.++|||||+|.+.++|..|
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~t---------------g~~kg~afV~f~~~~~A~~A 83 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP--LT---------------KRSRGFGFVTFMDQAGVDKV 83 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCT--TT---------------CCCTTCEEEEESSHHHHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECC--CC---------------CCcCcEEEEEECCHHHHHHH
Confidence 33447899999999999999999999999999999985432 11 33679999999999999999
Q ss_pred HhccceEEcceeeccccCCCcc
Q 015686 301 LAFNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 301 l~lng~~l~Gr~I~V~~a~~~~ 322 (402)
|..++..|.|+.|.|.++.++.
T Consensus 84 i~~~~~~l~g~~l~V~~a~~~~ 105 (109)
T 2rs2_A 84 LAQSRHELDSKTIDPKVAFPRR 105 (109)
T ss_dssp HHSSCEEETTEEEEEEECCCCC
T ss_pred HHHCCCcCCCEEEEEEEccCCC
Confidence 9866799999999999987543
No 61
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=3.6e-15 Score=121.99 Aligned_cols=82 Identities=27% Similarity=0.368 Sum_probs=71.6
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|+.|| |..|+|+..+. + +.++|||||+|.+.++|..||.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~--~---------------g~~~g~afV~f~~~~~a~~A~~ 74 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKD--T---------------DKFKGFCYVEFDEVDSLKEALT 74 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSS--S---------------CSEEEEEEEEESSHHHHHHHGG
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCC--C---------------CccceEEEEEECCHHHHHHHHh
Confidence 3468999999999999999999999997 99999865431 1 2356999999999999999999
Q ss_pred ccceEEcceeeccccCCCcc
Q 015686 303 FNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~ 322 (402)
||+..|.|+.|.|.++.++.
T Consensus 75 l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dng_A 75 YDGALLGDRSLRVDIAEGRK 94 (103)
T ss_dssp GTTCEETTEECEEEECCCCC
T ss_pred hCCCeECCeEEEEEEecCCC
Confidence 99999999999999987654
No 62
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.9e-15 Score=121.33 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=69.7
Q ss_pred CcccEEEEeCCCCcCcHHHHH----HHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHH
Q 015686 223 KLLRTIFVGNLPLKVKKKTLI----KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~----~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~ 298 (402)
...++|||+|||+++++++|+ .+|++||.|.+|+|+..+. .+|||||+|.+.++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~--------------------~rg~afV~f~~~~~A~ 66 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTD--------------------YQLKAVVQMENLQDAI 66 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCS--------------------TTCCEEEEESSHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCC--------------------CCeEEEEEECCHHHHH
Confidence 346889999999999999999 9999999999999854321 1479999999999999
Q ss_pred HHHh-ccceEEcceeeccccCCCc
Q 015686 299 AALA-FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 299 ~Al~-lng~~l~Gr~I~V~~a~~~ 321 (402)
.||. |||..|.|+.|.|.++.+.
T Consensus 67 ~Ai~~l~g~~~~gr~l~V~~a~~~ 90 (96)
T 2dgx_A 67 GAVNSLHRYKIGSKKILVSLATGA 90 (96)
T ss_dssp HHHHHHTTEEETTEEEEEEECCCS
T ss_pred HHHHHhCCCEECCeEEEEEEcCCC
Confidence 9996 9999999999999998754
No 63
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.61 E-value=2.3e-15 Score=120.92 Aligned_cols=79 Identities=27% Similarity=0.410 Sum_probs=70.1
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|++||.|..|+|+..+ . +.++|||||+|.+.++|..||.
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~---~---------------g~~~g~afV~f~~~~~a~~A~~ 75 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR---E---------------GKPKSFGFVCFKHPESVSYAIA 75 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT---T---------------SCEEEEEEEEESSTHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC---C---------------CCCceEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999999999986542 1 2256999999999999999997
Q ss_pred -ccceEEcceeeccccCC
Q 015686 303 -FNMAVIGGNHIRLDRAC 319 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~ 319 (402)
|||..|.|+.|.|.++.
T Consensus 76 ~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 76 LLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp HHTTCEETTEECEEECCC
T ss_pred HhCCCEECCCEEEEEEcC
Confidence 99999999999999875
No 64
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.60 E-value=5.4e-16 Score=119.39 Aligned_cols=75 Identities=23% Similarity=0.385 Sum_probs=66.1
Q ss_pred EEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhccce
Q 015686 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNMA 306 (402)
Q Consensus 227 tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~lng~ 306 (402)
+|||+|||+++++++|+.+|++||.|..|+|+..+. + +.++|||||+|.+.++|+.|+.+||.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~a~~~~~~ 63 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKT--T---------------NRHRGFGFVTFESEDIVEKVCEIHFH 63 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSS--S---------------TTSCBEEEEECSCHHHHHHHHSSSCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCC--C---------------CCcCcEEEEEECCHHHHHHHHHCCCC
Confidence 499999999999999999999999999998854321 1 23679999999999999999999999
Q ss_pred EEcceeeccccC
Q 015686 307 VIGGNHIRLDRA 318 (402)
Q Consensus 307 ~l~Gr~I~V~~a 318 (402)
.|.|+.|.|.++
T Consensus 64 ~~~g~~l~v~~A 75 (75)
T 2mss_A 64 EINNKMVECKKA 75 (75)
T ss_dssp CSSSCCCEEECC
T ss_pred EECCEEEEEEeC
Confidence 999999999864
No 65
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.3e-15 Score=126.83 Aligned_cols=81 Identities=23% Similarity=0.254 Sum_probs=71.0
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhc
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~l 303 (402)
..++|||+|||+++++++|+.+|+.||.|..|+|+..+. + +.++|||||+|.+.++|+.||.|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------g~~~g~afV~f~~~~~a~~A~~l 86 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRN--S---------------RRSKGIAYVEFCEIQSVPLAIGL 86 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCC--S---------------SSCCCCEEEEESCGGGHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCC--C---------------CccCcEEEEEeCcHHHHHHHHHc
Confidence 368999999999999999999999999999999854321 1 23569999999999999999999
Q ss_pred cceEEcceeeccccCCCc
Q 015686 304 NMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~ 321 (402)
||..|.|+.|.|.++.++
T Consensus 87 ~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 87 TGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp TTEEETTEEEEEEEHHHH
T ss_pred CCCEeCCeEEEEEecCCC
Confidence 999999999999987644
No 66
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.3e-15 Score=124.18 Aligned_cols=83 Identities=24% Similarity=0.409 Sum_probs=72.0
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH-
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al- 301 (402)
...++|||+|||+++++++|+.+|+.||.|..|+|+..+. + +.++|||||+|.+.++|..||
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~A~~A~~ 72 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRE--T---------------QRSRGFGFVTFENIDDAKDAMM 72 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSS--S---------------CSCCSEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC--C---------------CCcccEEEEEECCHHHHHHHHH
Confidence 3478999999999999999999999999999999854321 1 235699999999999999999
Q ss_pred hccceEEcceeeccccCCCcc
Q 015686 302 AFNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~ 322 (402)
.||+..|.|+.|.|.++.++.
T Consensus 73 ~l~g~~~~g~~l~v~~a~~~~ 93 (102)
T 1x5s_A 73 AMNGKSVDGRQIRVDQAGKSS 93 (102)
T ss_dssp HHTTCCTTSCCCEEEEEECCC
T ss_pred HhCCCEECCeEEEEEECCCCC
Confidence 599999999999999987554
No 67
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.2e-15 Score=123.64 Aligned_cols=84 Identities=21% Similarity=0.380 Sum_probs=71.8
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|+.||.|..|+|+..+ ..+ +.++|||||+|.+.++|..||.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~---------------~~~~g~afV~f~~~~~a~~A~~ 76 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKM-TGT---------------GAHRGFGFVDFITKQDAKKAFN 76 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCC-SSS---------------CSSCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCC-CCC---------------CCcCceEEEEECCHHHHHHHHH
Confidence 347899999999999999999999999999999885421 011 3367999999999999999996
Q ss_pred -c-cceEEcceeeccccCCCcc
Q 015686 303 -F-NMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 303 -l-ng~~l~Gr~I~V~~a~~~~ 322 (402)
| |+..|.|+.|.|.++.++.
T Consensus 77 ~l~~~~~~~g~~l~v~~a~~~~ 98 (107)
T 2cph_A 77 ALCHSTHLYGRRLVLEWADSEV 98 (107)
T ss_dssp HHHTCCBSSSCBCEEEECCCCC
T ss_pred HhccCCeECCCEEEEEeCCCCC
Confidence 8 9999999999999997654
No 68
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.60 E-value=2e-15 Score=125.94 Aligned_cols=82 Identities=20% Similarity=0.336 Sum_probs=71.9
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..++|||+|||+++++++|+.+|+.||.|..|+|+..+. + +.++|||||+|.+.++|+.||.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------g~~~g~afV~f~~~~~a~~A~~~ 86 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQ--T---------------NLSKCFGFVSYDNPVSAQAAIQS 86 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSS--S---------------CSEEEEEEEECSSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC--C---------------CCcCccEEEEECCHHHHHHHHHH
Confidence 368999999999999999999999999999999865331 1 2356999999999999999995
Q ss_pred ccceEEcceeeccccCCCcc
Q 015686 303 FNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~ 322 (402)
||+..|.|+.|.|.++.++.
T Consensus 87 l~g~~~~g~~l~V~~a~~~~ 106 (115)
T 2cpz_A 87 MNGFQIGMKRLKVQLKRSKN 106 (115)
T ss_dssp HTTCEETTEECEEECCCCSC
T ss_pred cCCCEECCEEEEEEEcCCCC
Confidence 99999999999999987654
No 69
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.60 E-value=1.8e-15 Score=120.85 Aligned_cols=81 Identities=22% Similarity=0.261 Sum_probs=71.2
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|++||.|..|+|+. +++ .++|||||+|.+.++|..|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~----~~g---------------~~~g~afV~f~~~~~a~~a~~ 66 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM----ENG---------------KSKGCGVVKFESPEVAERACR 66 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEE----SSS---------------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc----cCC---------------CcceEEEEEECCHHHHHHHHH
Confidence 3478999999999999999999999999999999854 222 256999999999999999996
Q ss_pred -ccceEEcceeeccccCCCcc
Q 015686 303 -FNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~~ 322 (402)
|||..|.|+.|.|.++.++.
T Consensus 67 ~l~g~~~~g~~l~v~~a~~~~ 87 (92)
T 2dgv_A 67 MMNGMKLSGREIDVRIDRNAS 87 (92)
T ss_dssp HHTTCCBTTBCCCCEECSCCS
T ss_pred HhCCCEECCcEEEEEEcCCCC
Confidence 99999999999999987643
No 70
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.60 E-value=2.8e-15 Score=125.51 Aligned_cols=80 Identities=19% Similarity=0.369 Sum_probs=69.7
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
....++|||+|||+++++++|+.+|++||.|..|+|+..+ .+ +.++|||||+|.+.++|+.||
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~--~~---------------g~~~g~afV~f~~~~~A~~A~ 99 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDK--QT---------------SLSKCFGFVSFDNPDSAQVAI 99 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCS--SS---------------SCCCCEEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCC--CC---------------CCcCcEEEEEECCHHHHHHHH
Confidence 3447899999999999999999999999999999985432 11 236799999999999999999
Q ss_pred h-ccceEEcceeeccccC
Q 015686 302 A-FNMAVIGGNHIRLDRA 318 (402)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a 318 (402)
. |||..|.|+.|.|.++
T Consensus 100 ~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 100 KAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp HHCCCCEETTEECCEEEC
T ss_pred HHcCCCEECCEEEEEEec
Confidence 6 9999999999999876
No 71
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.60 E-value=5.6e-16 Score=126.76 Aligned_cols=81 Identities=17% Similarity=0.140 Sum_probs=71.1
Q ss_pred cccEEEEeCCCC------cCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhH
Q 015686 224 LLRTIFVGNLPL------KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (402)
Q Consensus 224 ~~~tVfVgNLP~------~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A 297 (402)
..++|||+|||+ ++++++|+.+|++||.|.+|+|++.+. + ++++|||||+|.+.++|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~--t---------------g~~kG~afV~f~~~~~A 67 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEA--T---------------GKTKGFLFVECGSMNDA 67 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETT--T---------------TEECSEEEEEESSHHHH
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCC--C---------------CccceEEEEEECCHHHH
Confidence 468999999999 999999999999999999999865432 1 23679999999999999
Q ss_pred HHHHh-ccceEEcc-eeeccccCCCc
Q 015686 298 EAALA-FNMAVIGG-NHIRLDRACPP 321 (402)
Q Consensus 298 ~~Al~-lng~~l~G-r~I~V~~a~~~ 321 (402)
+.||. |||..|.| +.|.|.++.+.
T Consensus 68 ~~Ai~~lng~~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 68 KKIIKSFHGKRLDLKHRLFLYTMKDV 93 (100)
T ss_dssp HHHHHHHTTCBSSSSCBCEEEESHHH
T ss_pred HHHHHHhCCcccCCCeEEEEEECchh
Confidence 99995 99999999 99999988643
No 72
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.5e-15 Score=118.30 Aligned_cols=73 Identities=26% Similarity=0.490 Sum_probs=66.6
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|++||.|..|+++. ++|||||+|.+.++|..|+.
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----------------------~kg~afV~f~~~~~A~~a~~ 66 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----------------------RQQCAFIQFATRQAAEVAAE 66 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----------------------GGTEEEEEESSHHHHHHHHH
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 4468999999999999999999999999999998842 34899999999999999996
Q ss_pred -c-cceEEcceeeccccC
Q 015686 303 -F-NMAVIGGNHIRLDRA 318 (402)
Q Consensus 303 -l-ng~~l~Gr~I~V~~a 318 (402)
| ||..|.|+.|.|.++
T Consensus 67 ~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 67 KSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp TTTTTCEETTEECCEEEC
T ss_pred HhcCCeeECCCEEEEEec
Confidence 7 999999999999886
No 73
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.60 E-value=1.7e-15 Score=124.84 Aligned_cols=76 Identities=16% Similarity=0.183 Sum_probs=67.3
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
.++++|||+|||+++++++|+.+|++||.|.+|++++ ++|||||+|.+.++|..|+.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----------------------~kg~AFVef~~~~~A~~Av~ 75 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----------------------KKRQALVEFEDVLGACNAVN 75 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 3478999999999999999999999999999998842 34899999999999999996
Q ss_pred -ccce--EEcceeeccccCCCc
Q 015686 303 -FNMA--VIGGNHIRLDRACPP 321 (402)
Q Consensus 303 -lng~--~l~Gr~I~V~~a~~~ 321 (402)
|++. .|.|+.|.|.++.++
T Consensus 76 ~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 76 YAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp HHHHSCEEETTEEEEEEECSCS
T ss_pred HhcCCCceeCCcEEEEEecccc
Confidence 8876 478999999998653
No 74
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.1e-15 Score=122.81 Aligned_cols=74 Identities=18% Similarity=0.320 Sum_probs=67.7
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..++|||+|||+++++++|+.+|+.||.|.+|+|.. ++|||||+|.+.++|..|+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----------------------~~g~afV~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----------------------EKGCCFIKYDTHEQAAVCIVA 82 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----------------------TTTEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 368999999999999999999999999999998841 45899999999999999995
Q ss_pred ccceEEcceeeccccCCC
Q 015686 303 FNMAVIGGNHIRLDRACP 320 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~ 320 (402)
|||..|.|+.|.|.++.+
T Consensus 83 l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 83 LANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp HTTCEETTEECCCCBCCC
T ss_pred hCCCeECCeEEEEEeccC
Confidence 999999999999999864
No 75
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.60 E-value=3.3e-15 Score=123.11 Aligned_cols=80 Identities=18% Similarity=0.177 Sum_probs=69.4
Q ss_pred CCcccEEEEeCCCCcC------cHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeech
Q 015686 222 GKLLRTIFVGNLPLKV------KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQ 295 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~v------tee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e 295 (402)
....++|||+|||+.+ ++++|+.+|++||.|..|+|+ ..+ +.++|||||+|.+.+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~----~~~---------------g~~~G~afV~f~~~~ 72 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP----EED---------------GKTKGYIFLEYASPA 72 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC----CBT---------------TBSCCEEEEEECSSS
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee----CCC---------------CCeeeEEEEEECCHH
Confidence 3346899999999999 889999999999999999873 122 236799999999999
Q ss_pred hHHHHHh-ccceEEcce-eeccccCCC
Q 015686 296 STEAALA-FNMAVIGGN-HIRLDRACP 320 (402)
Q Consensus 296 ~A~~Al~-lng~~l~Gr-~I~V~~a~~ 320 (402)
+|..||. |||..|.|+ .|.|.++..
T Consensus 73 ~A~~Ai~~l~g~~~~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 73 HAVDAVKNADGYKLDKQHTFRVNLFTD 99 (105)
T ss_dssp HHHHHHHHCSSEECSTTCEEEEECSCC
T ss_pred HHHHHHHHhCCcccCCCceEEEEEcch
Confidence 9999996 999999998 999999864
No 76
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.60 E-value=2.2e-15 Score=124.59 Aligned_cols=82 Identities=20% Similarity=0.253 Sum_probs=71.0
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|+.||.|..|+|+..+. + +.++|||||+|.+.++|..||.
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~A~~Ai~ 86 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRR--T---------------GFSKGYALVEYETHKQALAAKE 86 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTT--T---------------SSBCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC--C---------------CCcceEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999999999998854321 1 2366999999999999999996
Q ss_pred -ccceEEcceeeccccCCCc
Q 015686 303 -FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~ 321 (402)
|||..|.|+.|.|.++.++
T Consensus 87 ~l~g~~~~g~~l~V~~a~~~ 106 (110)
T 1oo0_B 87 ALNGAEIMGQTIQVDWCFVK 106 (110)
T ss_dssp HHTTCEETTEECEEEESEES
T ss_pred HcCCCEECCcEEEEEEcccC
Confidence 9999999999999998643
No 77
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.9e-15 Score=123.47 Aligned_cols=82 Identities=18% Similarity=0.291 Sum_probs=72.2
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|+.||.|..|+|+.. + +.++|||||+|.+.++|..||.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~----~---------------g~~~g~afV~f~~~~~A~~A~~ 73 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME----G---------------GRSKGFGFVCFSSPEEATKAVT 73 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC----S---------------SSEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----C---------------CCcCEEEEEEECCHHHHHHHHH
Confidence 34789999999999999999999999999999998542 2 2256999999999999999996
Q ss_pred -ccceEEcceeeccccCCCccc
Q 015686 303 -FNMAVIGGNHIRLDRACPPRK 323 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~~k 323 (402)
|||..|.|+.|.|.++.++..
T Consensus 74 ~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 74 EMNGRIVATKPLYVALAQRKEE 95 (103)
T ss_dssp HHTTCBSSSSBCEEEECSSCCC
T ss_pred HhCCCEeCCcEEEEEEeccccc
Confidence 999999999999999976543
No 78
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.4e-15 Score=124.79 Aligned_cols=80 Identities=16% Similarity=0.230 Sum_probs=70.6
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..++|||+|||+++++++|+.+|+.||.|..|.|+..+. + +.++|||||+|.+.++|+.||.
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~A~~~ 84 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR--T---------------GYLKGYTLVEYETYKEAQAAMEG 84 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT--T---------------SSEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCC--C---------------CceeeEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999865331 1 2356999999999999999996
Q ss_pred ccceEEcceeeccccCCC
Q 015686 303 FNMAVIGGNHIRLDRACP 320 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~ 320 (402)
|||..|.|+.|.|.++.+
T Consensus 85 l~g~~~~g~~l~V~~a~~ 102 (106)
T 1p27_B 85 LNGQDLMGQPISVDWCFV 102 (106)
T ss_dssp HTTCBSSSSBCEEEESEE
T ss_pred hcCCEECCcEEEEEeecC
Confidence 999999999999999864
No 79
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.3e-15 Score=125.82 Aligned_cols=82 Identities=20% Similarity=0.406 Sum_probs=72.0
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhcc
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ln 304 (402)
.++|||+|||+++++++|+.+|..||.|..|+|+..+. + +.++|||||+|.+.++|+.||.+|
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~---------------g~~~g~afV~f~~~~~a~~Ai~~~ 89 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPA--S---------------KRSRGFGFVTFSSMAEVDAAMAAR 89 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTT--T---------------SSCCSEEEEECSSHHHHHHHHTSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCC--C---------------CCcCceEEEEeCCHHHHHHHHHhC
Confidence 58999999999999999999999999999999865321 1 235699999999999999999889
Q ss_pred ceEEcceeeccccCCCccc
Q 015686 305 MAVIGGNHIRLDRACPPRK 323 (402)
Q Consensus 305 g~~l~Gr~I~V~~a~~~~k 323 (402)
+..|.|+.|.|.++.++..
T Consensus 90 ~~~~~g~~l~V~~a~~~~~ 108 (116)
T 1x4b_A 90 PHSIDGRVVEPKRAVAREE 108 (116)
T ss_dssp SEEETTEEEEEECCSSCCC
T ss_pred CcEECCEEEEEEECCCCcc
Confidence 9999999999999976543
No 80
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.2e-15 Score=123.59 Aligned_cols=82 Identities=23% Similarity=0.342 Sum_probs=70.6
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
....++|||+|||+++++++|+.+|+.||.|..|+|+..+. + +.++|||||+|.+.++|+.||
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~Ai 76 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQ--T---------------GKSRGYGFVTMADRAAAERAC 76 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSS--S---------------CCCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCC--C---------------CccceEEEEEECCHHHHHHHH
Confidence 44579999999999999999999999999999999854321 1 236699999999999999999
Q ss_pred h-ccceEEcceeeccccCCCc
Q 015686 302 A-FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a~~~ 321 (402)
. +|+ .|.|+.|.|.++...
T Consensus 77 ~~~~~-~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 77 KDPNP-IIDGRKANVNLAYLG 96 (116)
T ss_dssp TCSSC-EETTEECEEEESTTT
T ss_pred HhCCC-cCCCEEEEEEEcccC
Confidence 6 787 899999999998654
No 81
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.9e-15 Score=118.83 Aligned_cols=76 Identities=21% Similarity=0.305 Sum_probs=69.0
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
....++|||+|||+++++++|+.+|++||.|..|+|+ +|||||+|.+.++|+.|+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------------------------~~~afV~f~~~~~a~~A~ 60 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------------------------KDYAFVHMEKEADAKAAI 60 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------------------------SSCEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHH
Confidence 3447899999999999999999999999999999882 269999999999999999
Q ss_pred h-ccceEEcceeeccccCCCcc
Q 015686 302 A-FNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a~~~~ 322 (402)
. |||..|.|+.|.|.++.++.
T Consensus 61 ~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 61 AQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp HHHTTCEETTEECEEEESCCCC
T ss_pred HHhCCCEECCcEEEEEECCCCC
Confidence 6 99999999999999997653
No 82
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.9e-15 Score=124.44 Aligned_cols=85 Identities=18% Similarity=0.210 Sum_probs=72.1
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhcCCee--------EEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEee
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEID--------SVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKS 293 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~--------~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s 293 (402)
....++|||+|||+++++++|+.+|+.||.|. .|+|+..+ .+ +.++|||||+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~--~~---------------g~~~g~afV~f~~ 74 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDK--ET---------------GKPKGDATVSYED 74 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCT--TT---------------CSBCSEEEEEBSS
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeC--CC---------------CCeeeEEEEEECC
Confidence 34579999999999999999999999999998 57774422 11 2367999999999
Q ss_pred chhHHHHHh-ccceEEcceeeccccCCCccc
Q 015686 294 EQSTEAALA-FNMAVIGGNHIRLDRACPPRK 323 (402)
Q Consensus 294 ~e~A~~Al~-lng~~l~Gr~I~V~~a~~~~k 323 (402)
.++|..||. |||..|.|+.|.|.++.++..
T Consensus 75 ~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 75 PPTAKAAVEWFDGKDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEECSSCCCC
T ss_pred HHHHHHHHHHcCCCccCCCEEEEEECCCCCC
Confidence 999999996 999999999999999876543
No 83
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.59 E-value=1.3e-15 Score=128.40 Aligned_cols=80 Identities=14% Similarity=0.105 Sum_probs=70.5
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCC---eeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHH
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGE---IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~---I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~ 299 (402)
...++|||+|||+++|+++|+.+|+.||. |..|+|+..+. ++++|||||+|.+.++|++
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~------------------g~~~G~afV~F~~~~~a~~ 76 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE------------------GRQSGEAFVELESEDDVKL 76 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS------------------SCEEEEEEEEBSSHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC------------------CCCCeEEEEEECCHHHHHH
Confidence 34689999999999999999999999998 88999865321 2366999999999999999
Q ss_pred HHhccceEEcceeeccccCCC
Q 015686 300 ALAFNMAVIGGNHIRLDRACP 320 (402)
Q Consensus 300 Al~lng~~l~Gr~I~V~~a~~ 320 (402)
||.+|+..|.|+.|.|.++..
T Consensus 77 Al~~~g~~~~gr~i~V~~a~~ 97 (118)
T 2db1_A 77 ALKKDRESMGHRYIEVFKSHR 97 (118)
T ss_dssp HGGGTTEEETTEEEEEEEECH
T ss_pred HHhcCCCeECCeEEEEEECCH
Confidence 999999999999999998764
No 84
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.3e-15 Score=126.89 Aligned_cols=85 Identities=20% Similarity=0.303 Sum_probs=72.0
Q ss_pred cccEEEEeCCCCcCcHHHHH---HHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHH
Q 015686 224 LLRTIFVGNLPLKVKKKTLI---KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~---~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~A 300 (402)
..++|||+|||+++++++|+ .+|++||.|..|+|+.... ++.. +.++|||||+|.+.++|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~--~~~~------------~~~~G~afV~f~~~~~A~~A 79 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTS--YAGS------------QGPSASAYVTYIRSEDALRA 79 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSS--CCSS------------SCCCEEEEEEESSHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCC--cCcc------------CCCCeEEEEEECcHHHHHHH
Confidence 36789999999999999999 9999999999999855322 1111 23669999999999999999
Q ss_pred Hh-ccceEEcceeeccccCCCcc
Q 015686 301 LA-FNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 301 l~-lng~~l~Gr~I~V~~a~~~~ 322 (402)
|. |||..|.|+.|.|.++.++.
T Consensus 80 i~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 80 IQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp HHHHTTEEETTEEEEEESCCCCS
T ss_pred HHHhCCCEECCEEEEEEeccccc
Confidence 96 99999999999999997653
No 85
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3e-15 Score=121.30 Aligned_cols=82 Identities=20% Similarity=0.316 Sum_probs=71.5
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCee-EEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEID-SVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~-~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
...++|||+|||+++++++|+.+|++||.|. .|+|+..+. + +.++|||||+|.+.++|+.|+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~--~---------------g~~~g~afV~f~~~~~a~~A~ 69 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRL--T---------------GIPAGYCFVEFADLATAEKCL 69 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSS--S---------------CCEEEEEEEECSCHHHHHHHH
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCC--C---------------CCcCCEEEEEeCCHHHHHHHH
Confidence 3478999999999999999999999999999 999865431 1 235699999999999999999
Q ss_pred h-ccceEEccee----eccccCCCc
Q 015686 302 A-FNMAVIGGNH----IRLDRACPP 321 (402)
Q Consensus 302 ~-lng~~l~Gr~----I~V~~a~~~ 321 (402)
. |||..|.|+. |.|.++.+.
T Consensus 70 ~~l~g~~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 70 HKINGKPLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp HTTTTSEESSCSSCEECCEEETTCC
T ss_pred HHHcCCccCCCCcceeEEEeecCCC
Confidence 7 9999999999 999988654
No 86
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=7.6e-15 Score=119.17 Aligned_cols=75 Identities=24% Similarity=0.401 Sum_probs=68.1
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhc--CCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHH
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKF--GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~--G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~A 300 (402)
...++|||+|||+++++++|+.+|++| |.|..|.+ .+|||||+|.+.++|..|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~-------------------------~~g~afV~f~~~~~A~~A 67 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK-------------------------IRDYAFVHFSNREDAVEA 67 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE-------------------------CSSEEEEEESSHHHHHHH
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE-------------------------eCCeEEEEeCCHHHHHHH
Confidence 447899999999999999999999999 88988876 237999999999999999
Q ss_pred Hh-ccceEEcceeeccccCCCcc
Q 015686 301 LA-FNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 301 l~-lng~~l~Gr~I~V~~a~~~~ 322 (402)
|. |||..|.|+.|.|.++.++.
T Consensus 68 ~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 68 MKALNGKVLDGSPIEVTLAKPVD 90 (99)
T ss_dssp HHHHSSEEETTEEEEEECCCCCC
T ss_pred HHHhCCCEeCCcEEEEEECCCCC
Confidence 97 99999999999999997654
No 87
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=5.8e-15 Score=118.27 Aligned_cols=76 Identities=16% Similarity=0.302 Sum_probs=69.0
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
....++|||+|||+++++++|+.+|++||.|..|+|+ +|||||+|.+.++|..|+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------------------------~~~afV~f~~~~~a~~A~ 61 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------------------------KDYAFVHMERAEDAVEAI 61 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------------------------SSEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------------------------CCEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999999882 269999999999999999
Q ss_pred h-ccceEEcceeeccccCCCcc
Q 015686 302 A-FNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a~~~~ 322 (402)
. |||..|.|+.|.|.++.++.
T Consensus 62 ~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 62 RGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp HHHTTEEETTEEEEEEESSCCC
T ss_pred HHhCCCeeCCcEEEEEEccCCC
Confidence 5 99999999999999997654
No 88
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.5e-15 Score=119.06 Aligned_cols=76 Identities=17% Similarity=0.349 Sum_probs=69.1
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|++||.|..|+|+ +|||||+|.+.++|+.|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------------------------~g~afV~f~~~~~A~~A~~ 60 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------------------------KNYGFVHIEDKTAAEDAIR 60 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------------------------TTEEEEEESSHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHHH
Confidence 347899999999999999999999999999999883 2799999999999999995
Q ss_pred -ccceEEcceeeccccCCCccc
Q 015686 303 -FNMAVIGGNHIRLDRACPPRK 323 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~~k 323 (402)
||+..|.|+.|.|.++.++..
T Consensus 61 ~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 61 NLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp HHTTCBCSSCBCEEECSSCCCC
T ss_pred HhcCCccCCcEEEEEECCCCCC
Confidence 999999999999999976543
No 89
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.9e-15 Score=124.93 Aligned_cols=75 Identities=19% Similarity=0.264 Sum_probs=66.5
Q ss_pred cccEEEEeCCCC-cCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 224 LLRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 224 ~~~tVfVgNLP~-~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
+.++|||+|||+ ++++++|+.+|++||.|.+|+|+. .+|||||+|.+.++|..|+.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~-----------------------~kg~aFVef~~~~~A~~Ai~ 70 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN-----------------------KINEAFIEMATTEDAQAAVD 70 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS-----------------------SSSCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 468999999999 999999999999999999999842 24799999999999999996
Q ss_pred -ccc--eEEcceeeccccCCCc
Q 015686 303 -FNM--AVIGGNHIRLDRACPP 321 (402)
Q Consensus 303 -lng--~~l~Gr~I~V~~a~~~ 321 (402)
||+ ..|.|+.|.|.++...
T Consensus 71 ~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 71 YYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp HHHHSCCEETTEECEEEEECCC
T ss_pred HHcCCCceECCcEEEEEECCCC
Confidence 775 4699999999998743
No 90
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=4.9e-15 Score=121.13 Aligned_cols=83 Identities=24% Similarity=0.342 Sum_probs=72.4
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhh-cCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIK-FGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~-~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
...++|||+|||+++++++|+.+|+. ||.|..|+|+..+ + +.++|||||+|.+.++|..||
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~---~---------------g~~~g~afV~f~~~~~a~~A~ 68 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ---T---------------GVSKGYGFVKFTDELEQKRAL 68 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT---T---------------CCEEEEEEEEESCHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC---C---------------CCccceEEEEECCHHHHHHHH
Confidence 34689999999999999999999999 9999999986532 1 235699999999999999999
Q ss_pred h-ccceE-EcceeeccccCCCccc
Q 015686 302 A-FNMAV-IGGNHIRLDRACPPRK 323 (402)
Q Consensus 302 ~-lng~~-l~Gr~I~V~~a~~~~k 323 (402)
. |||.. |.|+.|.|.++.++..
T Consensus 69 ~~l~g~~~~~g~~l~v~~a~~~~~ 92 (104)
T 2dhg_A 69 TECQGAVGLGSKPVRLSVAIPKAS 92 (104)
T ss_dssp HHTTTCCSSSSSCCCCCBCCCCCS
T ss_pred HHccCCcccCCEeEEEEEccCCCc
Confidence 6 99999 9999999999976543
No 91
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.5e-15 Score=119.73 Aligned_cols=79 Identities=14% Similarity=0.176 Sum_probs=69.3
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..++|||+|||+++++++|+.+|++||.|..++|+..+. + +.++|||||+|.+.++|..|+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~A~~~ 66 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKT--T---------------NKCKGYGFVDFDSPSAAQKAVTA 66 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSS--S---------------CSCCSEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--C---------------CCcCcEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999865321 1 2356999999999999999996
Q ss_pred ccceEEcceeeccccCC
Q 015686 303 FNMAVIGGNHIRLDRAC 319 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~ 319 (402)
|||..|.|+.|+|.++.
T Consensus 67 l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 67 LKASGVQAQMAKQSGPS 83 (85)
T ss_dssp HHHHTCCEESCCSSCCC
T ss_pred hcCCeEeeEEEeecCCC
Confidence 99999999999998764
No 92
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.59 E-value=3e-15 Score=122.85 Aligned_cols=85 Identities=18% Similarity=0.264 Sum_probs=72.4
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
+...++|||+|||+++++++|+.+|++||.|..|+|+..+. + +.++|||||+|.+.++|..||
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------g~~~g~afV~f~~~~~A~~A~ 72 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRF--T---------------GMHKGCAFLTYCERESALKAQ 72 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSS--S---------------CSCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC--C---------------CCcceEEEEEECCHHHHHHHH
Confidence 34478999999999999999999999999999998854321 1 236699999999999999999
Q ss_pred h-ccceEE---cceeeccccCCCccc
Q 015686 302 A-FNMAVI---GGNHIRLDRACPPRK 323 (402)
Q Consensus 302 ~-lng~~l---~Gr~I~V~~a~~~~k 323 (402)
. ||+..+ .|+.|.|.++.++..
T Consensus 73 ~~l~g~~~~~~~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 73 SALHEQKTLPGMNRPIQVKPADSESR 98 (106)
T ss_dssp HHHTTTCCCTTCSSCCEEEECCCCSC
T ss_pred HHhcCCcccCCCCceEEEEECCcccc
Confidence 6 999987 899999999976543
No 93
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.59 E-value=3.1e-15 Score=122.56 Aligned_cols=81 Identities=21% Similarity=0.310 Sum_probs=71.3
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..++|||+|||+++++++|+.+|+.||.|..|+|+..+ . +.++|||||+|.+.++|..||.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~---------------g~~~g~afV~f~~~~~A~~Ai~~ 75 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP---D---------------GSSKGCAFVKFSSHTEAQAAIHA 75 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS---S---------------SCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---C---------------CCcCcEEEEEeCCHHHHHHHHHH
Confidence 37899999999999999999999999999999996543 1 2356999999999999999996
Q ss_pred ccceEEcc---eeeccccCCCcc
Q 015686 303 FNMAVIGG---NHIRLDRACPPR 322 (402)
Q Consensus 303 lng~~l~G---r~I~V~~a~~~~ 322 (402)
|||..|.| +.|.|.++.++.
T Consensus 76 l~g~~~~gg~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 76 LHGSQTMPGASSSLVVKFADTDK 98 (105)
T ss_dssp HSSCCCCTTCSSCCEEEESCSSC
T ss_pred HcCCccCCCCCccEEEEECccCc
Confidence 99999988 999999997654
No 94
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3.1e-15 Score=121.51 Aligned_cols=77 Identities=26% Similarity=0.453 Sum_probs=69.3
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|++||.|..|+|.. ++|||||+|.+.++|..|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~-----------------------~kg~afV~f~~~~~a~~a~~ 69 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK-----------------------DKGFGFIRLETRTLAEIAKV 69 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET-----------------------TTTEEEEECSSSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999999999998832 34899999999999999995
Q ss_pred -ccceEEcceeeccccCCCcc
Q 015686 303 -FNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~~ 322 (402)
|||..|.|+.|.|.++.++.
T Consensus 70 ~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 70 ELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp HHTTCCBTTBCCEEEESSCCS
T ss_pred HhCCCEeCCceEEEEEcCCCC
Confidence 99999999999999987643
No 95
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.9e-15 Score=126.38 Aligned_cols=82 Identities=11% Similarity=0.134 Sum_probs=71.4
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhcCCe-eEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHH
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEI-DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I-~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~A 300 (402)
+...++|||+|||+++++++|+.+|+.||.| ..|+|+.++ + ++++|||||+|.+.++|+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~---~---------------g~~~G~afV~F~~~~~a~~A 73 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN---N---------------GQGLGQALVQFKNEDDARKS 73 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT---T---------------SSCSSCEEEECSSHHHHHHH
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC---C---------------CCcceEEEEEECCHHHHHHH
Confidence 3447899999999999999999999999999 888885432 1 23679999999999999999
Q ss_pred HhccceEEcceeeccccCCCc
Q 015686 301 LAFNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 301 l~lng~~l~Gr~I~V~~a~~~ 321 (402)
|.+|+..|.|+.|.|.++.+.
T Consensus 74 l~~~~~~~~gr~i~v~~a~~~ 94 (114)
T 2cpy_A 74 ERLHRKKLNGREAFVHVVTLE 94 (114)
T ss_dssp GGGCSEEETTEEEEEEEECHH
T ss_pred HHhCCCccCCeEEEEEECCHH
Confidence 988999999999999998754
No 96
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=3.9e-15 Score=123.72 Aligned_cols=81 Identities=21% Similarity=0.210 Sum_probs=71.1
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|..||.|..|+|+..+ . +.++|||||+|.+.++|+.||.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~---~---------------g~~~g~afV~f~~~~~a~~A~~ 74 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK---D---------------GKSRGIGTVTFEQSIEAVQAIS 74 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT---T---------------CSEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---C---------------CCeeeEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999999999986532 1 2256999999999999999997
Q ss_pred -ccceEEcceeeccccCCCc
Q 015686 303 -FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~ 321 (402)
||+..|.|+.|.|.++...
T Consensus 75 ~l~g~~~~g~~l~v~~a~~~ 94 (114)
T 2do0_A 75 MFNGQLLFDRPMHVKMDERA 94 (114)
T ss_dssp HHTTCEETTEECEEEECSCC
T ss_pred HhCCCEeCCCEEEEEEcccC
Confidence 9999999999999998643
No 97
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.59 E-value=2e-15 Score=125.34 Aligned_cols=83 Identities=19% Similarity=0.328 Sum_probs=72.2
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
....++|||+|||+++++++|+.+|+.||.|..|+|+..+. + +.++|||||+|.+.++|..|+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~---------------g~~~g~afV~F~~~~~A~~Ai 85 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSE--T---------------GRSKGYGFITFSDSECAKKAL 85 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETT--T---------------TEEEEEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC--C---------------CccceEEEEEECCHHHHHHHH
Confidence 34478999999999999999999999999999999966432 1 225699999999999999999
Q ss_pred h-ccceEEcceeeccccCCCc
Q 015686 302 A-FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a~~~ 321 (402)
. |||..|.|+.|.|.++.++
T Consensus 86 ~~l~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 86 EQLNGFELAGRPMKVGHVTER 106 (108)
T ss_dssp HHHTTCCSSSSCCEEECSCSS
T ss_pred HHcCCCEECCEEEEEEEcccC
Confidence 6 9999999999999998653
No 98
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.2e-15 Score=124.13 Aligned_cols=81 Identities=20% Similarity=0.376 Sum_probs=71.0
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
....++|||+|||+++++++|+.+|++||.|..|+|+... + .++|||||+|.+.++|+.|+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~----~---------------~~kg~afV~f~~~~~A~~Ai 86 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE----R---------------GSKGFGFVTFENSADADRAR 86 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT----T---------------BCTTEEEEECCCSHHHHHHH
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC----C---------------CCceEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999999985421 1 15699999999999999999
Q ss_pred h-ccceEEcceeeccccCCCc
Q 015686 302 A-FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a~~~ 321 (402)
. |||..|.|+.|.|.++.++
T Consensus 87 ~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 87 EKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp HHHTTCEETTEECEEEECCCS
T ss_pred HHcCCCEECCEEEEEEECCCC
Confidence 6 9999999999999998643
No 99
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.58 E-value=2.6e-15 Score=120.64 Aligned_cols=72 Identities=15% Similarity=0.175 Sum_probs=66.2
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
+..||||||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.+.++|..|++ |
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----------------------~kGfaFVey~~~~eA~~Ai~~L 63 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----------------------NQGIALCKYTTREEANKAQMAL 63 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHHHH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----------------------CCcEEEEEECCHHHHHHHHHHh
Confidence 56799999999999999999999999999998832 35999999999999999996 9
Q ss_pred cceEEcceeeccccCC
Q 015686 304 NMAVIGGNHIRLDRAC 319 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~ 319 (402)
|+..|.|+.|+|..+.
T Consensus 64 n~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 64 NNCVLANTTIFAESPS 79 (89)
T ss_dssp TTEEETTEEEEEECCC
T ss_pred cCCEECCcEEEEEECC
Confidence 9999999999999873
No 100
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.58 E-value=2.5e-15 Score=122.05 Aligned_cols=81 Identities=25% Similarity=0.280 Sum_probs=70.3
Q ss_pred CCCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeE--------EEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEe
Q 015686 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDS--------VRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (402)
Q Consensus 221 e~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~--------vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~ 292 (402)
.+...++|||+|||+++++++|+.+|++||.|.. |+|+..+. + ++++|||||+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~--~---------------g~~~G~afV~f~ 71 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRE--T---------------GKLKGEATVSFD 71 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTT--T---------------CSEEEEEEEEBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCC--C---------------CCeeeEEEEEEC
Confidence 3445789999999999999999999999999998 88865321 1 235699999999
Q ss_pred echhHHHHHh-ccceEEcceeeccccC
Q 015686 293 SEQSTEAALA-FNMAVIGGNHIRLDRA 318 (402)
Q Consensus 293 s~e~A~~Al~-lng~~l~Gr~I~V~~a 318 (402)
+.++|+.|+. |||..|.|+.|.|.++
T Consensus 72 ~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 72 DPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp SHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 9999999996 9999999999999876
No 101
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.2e-15 Score=121.92 Aligned_cols=76 Identities=17% Similarity=0.322 Sum_probs=69.0
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..++|||+|||+++++++|+.+|+.||.|..|+|+. .+|||||+|.+.++|..||.
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~-----------------------~~g~afV~f~~~~~a~~A~~~ 80 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP-----------------------EKGYSFVRFSTHESAAHAIVS 80 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 368999999999999999999999999999998843 24899999999999999995
Q ss_pred ccceEEcceeeccccCCCcc
Q 015686 303 FNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~ 322 (402)
|||..|.|+.|.|.++.+..
T Consensus 81 l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 81 VNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp HTTCEETTEECEEECCCCCC
T ss_pred cCCCEECCcEEEEEecCCCC
Confidence 99999999999999997654
No 102
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.58 E-value=4.8e-15 Score=120.63 Aligned_cols=73 Identities=27% Similarity=0.506 Sum_probs=67.3
Q ss_pred CcccEEEEeCCCC-cCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 223 KLLRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 223 ~~~~tVfVgNLP~-~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
...++|||+|||+ ++++++|+.+|+.||.|..|+| .+|||||+|.+.++|..|+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i-------------------------~~g~afV~f~~~~~A~~Ai 74 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI-------------------------KNAFGFIQFDNPQSVRDAI 74 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE-------------------------CSSEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-------------------------eCCEEEEEECCHHHHHHHH
Confidence 3478999999999 9999999999999999999988 1389999999999999999
Q ss_pred h-ccceEEcceeeccccCCC
Q 015686 302 A-FNMAVIGGNHIRLDRACP 320 (402)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a~~ 320 (402)
. |||..|.|+.|.|.++..
T Consensus 75 ~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 75 EXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp HHHTTSEETTEECEEEECCC
T ss_pred HHcCCCEECCEEEEEEecCC
Confidence 6 999999999999999864
No 103
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=3.7e-15 Score=123.44 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=67.6
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
.+.++|||+|||+++++++|+.+|++||.|..|+|+. ++|||||+|.+.++|..|+.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-----------------------~kg~aFVef~~~~~A~~Ai~ 69 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-----------------------FKRQALVEFENIDSAKECVT 69 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999999999988732 24899999999999999996
Q ss_pred -ccce--EEcceeeccccCCCccc
Q 015686 303 -FNMA--VIGGNHIRLDRACPPRK 323 (402)
Q Consensus 303 -lng~--~l~Gr~I~V~~a~~~~k 323 (402)
|++. .|.|+.|.|.++..+..
T Consensus 70 ~l~~~~~~i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 70 FAADVPVYIAGQQAFFNYSTSKRI 93 (104)
T ss_dssp HHHHSCCBSSSSBCEEEECSSSSC
T ss_pred HhccCCceECCEEEEEEEccCccc
Confidence 7654 59999999999976543
No 104
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.58 E-value=2.5e-15 Score=117.72 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=63.2
Q ss_pred cEEEEeCCCCcC------cHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHH
Q 015686 226 RTIFVGNLPLKV------KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (402)
Q Consensus 226 ~tVfVgNLP~~v------tee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~ 299 (402)
++|||+|||+++ ++++|+.+|++||.|.+|+|+ ..+ +.++|||||+|.+.++|..
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~----~~~---------------g~~~g~afV~f~~~~~A~~ 62 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP----EED---------------GKTKGYIFLEYASPAHAVD 62 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC----CBT---------------TBCCCEEEEEESSHHHHHH
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec----CCC---------------CcEeEEEEEEECCHHHHHH
Confidence 689999999999 789999999999999998873 122 2356999999999999999
Q ss_pred HHh-ccceEEcce-eeccc
Q 015686 300 ALA-FNMAVIGGN-HIRLD 316 (402)
Q Consensus 300 Al~-lng~~l~Gr-~I~V~ 316 (402)
|+. |||..|.|+ .|.|.
T Consensus 63 Ai~~lng~~~~g~~~l~V~ 81 (81)
T 2krb_A 63 AVKNADGYKLDKQHTFRVN 81 (81)
T ss_dssp HHTTSSSCCCSSSSCCCCC
T ss_pred HHHHhcCcccCCceeEEeC
Confidence 996 999999999 88873
No 105
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.2e-15 Score=122.27 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=69.4
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeE-EEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDS-VRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~-vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
...++|||+|||+++++++|+.+|..||.|.. |+|+.. .+ ++++|||||+|.+.++|+.||
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~---~~---------------g~~~G~afV~F~~~~~a~~A~ 74 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD---FQ---------------GRSTGEAFVQFASQEIAEKAL 74 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC---SS---------------SCBCSEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC---CC---------------CCcceEEEEEECCHHHHHHHH
Confidence 34689999999999999999999999999986 666332 12 336799999999999999999
Q ss_pred hccceEEcceeeccccCCCc
Q 015686 302 AFNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~ 321 (402)
..|+..|.||.|.|.++...
T Consensus 75 ~~~~~~~~gr~i~v~~~~~~ 94 (104)
T 1wg5_A 75 KKHKERIGHRYIEIFKSSRA 94 (104)
T ss_dssp TTTTCCSSSSCCEEEEECTT
T ss_pred HhCcchhCCcEEEEEECCHH
Confidence 88999999999999888654
No 106
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.58 E-value=2.6e-15 Score=125.92 Aligned_cols=80 Identities=20% Similarity=0.127 Sum_probs=68.6
Q ss_pred CCCcccEEEEeCCCCcCcHHHHHHHhhhcC-CeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHH
Q 015686 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFG-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (402)
Q Consensus 221 e~~~~~tVfVgNLP~~vtee~L~~~F~~~G-~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~ 299 (402)
.+...++|||+|||+++++++|+++|+.|| .|..+.|.. . .++|||||+|.+.++|+.
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~------~---------------~~rGfaFV~F~~~e~A~~ 82 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT------R---------------DFDGTGALEFPSEEILVE 82 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS------C---------------SSSCCEEEEESSHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc------C---------------CCCCEEEEEECCHHHHHH
Confidence 344468999999999999999999999999 899888721 0 146899999999999999
Q ss_pred HHh-ccceEEcceeeccccCCCc
Q 015686 300 ALA-FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 300 Al~-lng~~l~Gr~I~V~~a~~~ 321 (402)
||. |||..|.|+.|.|.++..+
T Consensus 83 Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 83 ALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp HHHHTTTEEETTEEEEEEESCC-
T ss_pred HHHHcCCCEECCeEEEEEECCCC
Confidence 995 9999999999999998643
No 107
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.58 E-value=1.3e-15 Score=117.05 Aligned_cols=75 Identities=24% Similarity=0.375 Sum_probs=65.4
Q ss_pred EEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhccce
Q 015686 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNMA 306 (402)
Q Consensus 227 tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~lng~ 306 (402)
+|||+|||+++++++|+.+|++||.|..+.|+..+. + +.++|||||+|.+.++|..|+.+++.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~Ai~~~~~ 63 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK--T---------------NKRRGFCFITFKEEEPVKKIMEKKYH 63 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCC--C---------------SSSCCCEEEECSSSHHHHHHHTTSSC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--C---------------CCcCCEEEEEECCHHHHHHHHHhCCC
Confidence 599999999999999999999999999998744221 1 23679999999999999999998999
Q ss_pred EEcceeeccccC
Q 015686 307 VIGGNHIRLDRA 318 (402)
Q Consensus 307 ~l~Gr~I~V~~a 318 (402)
.|.|+.|.|.++
T Consensus 64 ~~~g~~l~v~~a 75 (75)
T 1iqt_A 64 NVGLSKCEIKVA 75 (75)
T ss_dssp CBTTBCCCEEEC
T ss_pred eECCEEEEEEEC
Confidence 999999998764
No 108
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.58 E-value=1.6e-15 Score=123.84 Aligned_cols=82 Identities=28% Similarity=0.396 Sum_probs=69.1
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|+.|| |..|+|+..+. . .++++|||||+|.+.++|..||.
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~-~---------------~g~~~g~afV~f~~~~~a~~Ai~ 79 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPS-N---------------PERLKGFGYAEFEDLDSLLSALS 79 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTT-T---------------TCCCCSCEEEEECCHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCC-c---------------CCccCeEEEEEECCHHHHHHHHh
Confidence 3479999999999999999999999999 99998844220 1 13467999999999999999999
Q ss_pred ccceEEcceeeccccCCCc
Q 015686 303 FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~ 321 (402)
|||..|.|+.|.|.++.+.
T Consensus 80 l~g~~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 80 LNEESLGNRRIRVDVADQA 98 (100)
T ss_dssp TTTCCBTTBCCCCEECCCS
T ss_pred cCCCEECCeEEEEEeccCC
Confidence 9999999999999998653
No 109
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.57 E-value=4.8e-15 Score=121.81 Aligned_cols=79 Identities=15% Similarity=0.258 Sum_probs=69.9
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+.+++++|+.+|+.||.|..|.|+..+ + +.++|||||+|.+.++|+.||.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~---------------g~~~g~afV~f~~~~~a~~A~~ 88 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR---S---------------GRSLGTADVHFERKADALKAMK 88 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT---T---------------SCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---C---------------CCcceEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999999999986543 1 2356999999999999999997
Q ss_pred -ccceEEcceeeccccCC
Q 015686 303 -FNMAVIGGNHIRLDRAC 319 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~ 319 (402)
|||..|.|+.|.|.++.
T Consensus 89 ~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 89 QYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HHTTCEETTEECEEEEEC
T ss_pred HhCCCEeCCcEEEEEEeC
Confidence 99999999999998864
No 110
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=7.4e-15 Score=121.06 Aligned_cols=77 Identities=13% Similarity=0.251 Sum_probs=67.6
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..++|||+|||+++++++|+.+|++||.|..|+|+. .+|||||+|.+.++|..|+.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~-----------------------~kg~aFVef~~~~~A~~Ai~~ 70 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK-----------------------GKNQAFLELATEEAAITMVNY 70 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999998732 24899999999999999996
Q ss_pred c--cceEEcceeeccccCCCccc
Q 015686 303 F--NMAVIGGNHIRLDRACPPRK 323 (402)
Q Consensus 303 l--ng~~l~Gr~I~V~~a~~~~k 323 (402)
| ++..|.|+.|.|.++..+..
T Consensus 71 l~~~~~~~~Gr~l~V~~a~~~~~ 93 (101)
T 2cq1_A 71 YSAVTPHLRNQPIYIQYSNHKEL 93 (101)
T ss_dssp HHHSCCEETTEECEEEECSCSSC
T ss_pred hccCCceECCcEEEEEEcCcccC
Confidence 4 56789999999999976543
No 111
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=3.1e-15 Score=121.16 Aligned_cols=77 Identities=18% Similarity=0.384 Sum_probs=67.4
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|+.||.|. ++++.. .++|||||+|.+.++|+.|+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---------------------~~~g~afV~f~~~~~a~~A~~ 74 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---------------------GPRRRAFLHYPDSAAAQQAVS 74 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---------------------TTTTEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---------------------CCCcEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999999996 555321 256899999999999999995
Q ss_pred -ccceEEcceeeccccCCCc
Q 015686 303 -FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~ 321 (402)
|||..|.|+.|.|.++.++
T Consensus 75 ~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 75 CLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp HHTTCCSSSSCCEEEECCCC
T ss_pred HhCCCEECCcEEEEEEcCCC
Confidence 9999999999999998764
No 112
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.6e-14 Score=117.97 Aligned_cols=82 Identities=17% Similarity=0.257 Sum_probs=70.7
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|..||.|..|+|+..+. + +.++|||||+|.+.++|..||.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------g~~~g~afV~f~~~~~a~~A~~ 75 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLK--T---------------GHSKGFGFVRFTEYETQVKVMS 75 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSS--S---------------CSEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCC--C---------------CCccceEEEEECCHHHHHHHHH
Confidence 3468899999999999999999999999999999865431 1 2356999999999999999998
Q ss_pred ccceEEcceeeccccCCCcc
Q 015686 303 FNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~ 322 (402)
+++.|.|+.|.|.++.++.
T Consensus 76 -~~~~~~g~~l~v~~a~~~~ 94 (103)
T 2cqg_A 76 -QRHMIDGRWCDCKLPNSKQ 94 (103)
T ss_dssp -SCEEETTEEEEEECCCTTC
T ss_pred -cCCeeCCeEEEEEecCCCC
Confidence 5789999999999997653
No 113
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.57 E-value=4.1e-15 Score=127.56 Aligned_cols=83 Identities=22% Similarity=0.227 Sum_probs=72.2
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
+...++|||+|||+++++++|+.+|+.||.|..|+|+..+. + +.++|||||+|.+.++|+.||
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--t---------------g~~~G~afV~F~~~~~A~~Ai 105 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ--S---------------RRSRGFAFVYFENVDDAKEAK 105 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSS--S---------------SCCCCEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--C---------------CccceEEEEEECCHHHHHHHH
Confidence 34478999999999999999999999999999999865321 1 235699999999999999999
Q ss_pred h-ccceEEcceeeccccCCCc
Q 015686 302 A-FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a~~~ 321 (402)
. |||..|.|+.|.|.++.++
T Consensus 106 ~~lng~~i~g~~l~V~~a~~~ 126 (129)
T 2kxn_B 106 ERANGMELDGRRIRVDFSITK 126 (129)
T ss_dssp HHHTTCCSSSSCCEESCCSSS
T ss_pred HHhCCCEECCEEEEEEEecCC
Confidence 6 9999999999999998754
No 114
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.5e-15 Score=126.74 Aligned_cols=77 Identities=18% Similarity=0.352 Sum_probs=68.0
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..++|||+|||+++++++|+.+|++||.|.+|+|+. .+|||||+|.+.++|..|+.
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~-----------------------~kG~AFVeF~~~e~A~~Ai~~ 86 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-----------------------GKNQAFIEMNTEEAANTMVNY 86 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG-----------------------GGTEEEEECSCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999843 24899999999999999996
Q ss_pred ccc--eEEcceeeccccCCCccc
Q 015686 303 FNM--AVIGGNHIRLDRACPPRK 323 (402)
Q Consensus 303 lng--~~l~Gr~I~V~~a~~~~k 323 (402)
+++ ..|.|+.|.|.++.++..
T Consensus 87 l~~~~~~l~Gr~l~V~~a~~k~~ 109 (119)
T 2ad9_A 87 YTSVTPVLRGQPIYIQFSNHKEL 109 (119)
T ss_dssp HHHHCCCBTTBCCEEEECSSSSC
T ss_pred hccCCceECCeEEEEEEccCCCC
Confidence 664 689999999999976543
No 115
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.56 E-value=9.8e-15 Score=119.50 Aligned_cols=75 Identities=28% Similarity=0.454 Sum_probs=68.4
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..++|||+|||+++++++|+.+|++||.|..|.|+ +|||||+|.+.++|..||.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------------------------~~~afV~f~~~~~a~~A~~~ 64 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------------------------KDYAFIHFDERDGAVKAMEE 64 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------------------------SSCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------------------------CCEEEEEeCCHHHHHHHHHH
Confidence 46899999999999999999999999999999872 2799999999999999996
Q ss_pred ccceEEcceeeccccCCCccc
Q 015686 303 FNMAVIGGNHIRLDRACPPRK 323 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k 323 (402)
||+..|.|+.|.|.++.++..
T Consensus 65 l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 65 MNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp HTTEEETTEEEEEEECCCCCC
T ss_pred HCCCccCCCEEEEEEcCCCcc
Confidence 999999999999999976543
No 116
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=6.8e-15 Score=117.51 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=70.4
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|+.| .|..|+|++. .. ++++|||||+|.+.++|+.||.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~---~~---------------g~~~g~afV~f~~~~~a~~A~~ 68 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN---AH---------------GNKTGYIFVDFSNEEEVKQALK 68 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC---TT---------------SCEEEEEEEECSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC---CC---------------CCCceEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999 8999998653 11 2356999999999999999999
Q ss_pred ccceEEcceeeccccCCCc
Q 015686 303 FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~ 321 (402)
|||..|.|+.|.|.++.++
T Consensus 69 ~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 69 CNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp SCSEEETTEEEEEEEESSC
T ss_pred hCCceeCCcEEEEEECCcC
Confidence 9999999999999998654
No 117
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.56 E-value=4.8e-15 Score=131.39 Aligned_cols=80 Identities=18% Similarity=0.271 Sum_probs=70.2
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcC--CeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFG--EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G--~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
.++|||+|||+++++++|+.+|+.|| .|..|+|+.++. + ++++|||||+|.+.++|..||.
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~--t---------------g~skGfaFV~f~~~~~A~~Ai~ 117 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRA--N---------------GQSKGYAEVVVASENSVHKLLE 117 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTT--T---------------CCEEEEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCC--C---------------CccceEEEEEECCHHHHHHHHH
Confidence 58999999999999999999999999 999999865432 1 3367999999999999999996
Q ss_pred -ccceEEcceeeccccCCCc
Q 015686 303 -FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~ 321 (402)
|||..|.|+.|.|.++.+.
T Consensus 118 ~lng~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 118 LLPGKVLNGEKVDVRPATRQ 137 (156)
T ss_dssp HSTTCEETTEECEEEECCHH
T ss_pred HcCCCEECCeEeEEEEcCCC
Confidence 8999999999999998643
No 118
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=3.9e-15 Score=124.39 Aligned_cols=77 Identities=17% Similarity=0.166 Sum_probs=68.0
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhcc
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ln 304 (402)
.++|||+|||+++++++|+++|+.| .|..|+|+.++ . ++++|||||+|.+.++|++||.+|
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~---~---------------g~~~G~afV~F~~~~~a~~Al~~~ 76 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH---V---------------GRNNGNGLVKFLSPQDTFEALKRN 76 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT---T---------------CCCCSEEEEECSSHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC---C---------------CCCCeEEEEEECCHHHHHHHHhcC
Confidence 5789999999999999999999999 78899885432 1 236799999999999999999999
Q ss_pred ceEEcceeeccccCCC
Q 015686 305 MAVIGGNHIRLDRACP 320 (402)
Q Consensus 305 g~~l~Gr~I~V~~a~~ 320 (402)
+..|.||.|.|..+..
T Consensus 77 ~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 77 RMLMIQRYVEVSPATE 92 (109)
T ss_dssp TEEETTEEEEEEECCH
T ss_pred CCeECCeEEEEEECCc
Confidence 9999999999988754
No 119
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.56 E-value=9e-15 Score=115.41 Aligned_cols=71 Identities=27% Similarity=0.558 Sum_probs=64.8
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhc----C-------CeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEe
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKF----G-------EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~----G-------~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~ 292 (402)
..++|||+|||+++++++|+.+|++| | .|.++++.. ++|||||+|.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~-----------------------~kg~afV~f~ 61 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----------------------DKNFAFLEFR 61 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS-----------------------SSSEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC-----------------------CCcEEEEEcC
Confidence 47899999999999999999999999 8 898888732 3589999999
Q ss_pred echhHHHHHhccceEEcceeecccc
Q 015686 293 SEQSTEAALAFNMAVIGGNHIRLDR 317 (402)
Q Consensus 293 s~e~A~~Al~lng~~l~Gr~I~V~~ 317 (402)
+.++|..|+.|||..|.|+.|.|.+
T Consensus 62 ~~~~a~~A~~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 62 SVDETTQAMAFDGIIFQGQSLKIRR 86 (87)
T ss_dssp SHHHHHHHGGGTTCEETTEECEEEC
T ss_pred CHHHHHHHHhcCCCEECCeEEEEeC
Confidence 9999999999999999999999875
No 120
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.56 E-value=2.6e-15 Score=130.40 Aligned_cols=80 Identities=14% Similarity=0.077 Sum_probs=70.6
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCC---eeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHH
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGE---IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~---I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~ 299 (402)
...++|||+|||+++|+++|+.+|+.||. |..|+|+.++. ++++|||||+|.+.++|+.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~------------------g~srG~aFV~F~~~e~a~~ 103 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE------------------GRQSGEAFVELGSEDDVKM 103 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS------------------SCEEEEEEEECSSHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC------------------CCCCeEEEEEECCHHHHHH
Confidence 34689999999999999999999999999 88898865321 2367999999999999999
Q ss_pred HHhccceEEcceeeccccCCC
Q 015686 300 ALAFNMAVIGGNHIRLDRACP 320 (402)
Q Consensus 300 Al~lng~~l~Gr~I~V~~a~~ 320 (402)
||.+|+..|.||.|.|.++.+
T Consensus 104 Al~~~g~~l~gr~i~V~~a~~ 124 (136)
T 2hgl_A 104 ALKKDRESMGHRYIEVFKSHR 124 (136)
T ss_dssp HHTTTEEESSSSEEEEEECCH
T ss_pred HHhcCCCEECCEEEEEEECCh
Confidence 999999999999999998754
No 121
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.8e-15 Score=123.61 Aligned_cols=81 Identities=23% Similarity=0.420 Sum_probs=71.6
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
.++|||+|||+++++++|+.+|+.||.|..|+|+..+. + +.++|||||+|.+.++|..|+. |
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~--~---------------g~~~g~afV~f~~~~~a~~A~~~l 70 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRE--T---------------GKPKGYGFCEYQDQETALSAMRNL 70 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETT--T---------------TEEEEEEEEECSCHHHHHHHHHHS
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCC--C---------------CccceEEEEEECCHHHHHHHHHHh
Confidence 68899999999999999999999999999999865432 1 2356999999999999999996 9
Q ss_pred cceEEcceeeccccCCCcc
Q 015686 304 NMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~ 322 (402)
||..|.|+.|.|.++.++.
T Consensus 71 ~g~~~~g~~l~v~~a~~~~ 89 (104)
T 1p1t_A 71 NGREFSGRALRVDNAASEK 89 (104)
T ss_dssp SSBSCSSSCBEEEETTCTT
T ss_pred CCCeeCCcEEEEEeCCCcc
Confidence 9999999999999987653
No 122
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3e-15 Score=123.21 Aligned_cols=81 Identities=16% Similarity=0.194 Sum_probs=69.8
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
+...++|||+|||+++++++|+++|+.||.| .|+|+.++ + ++++|||||+|.+.++|+.||
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~---~---------------g~~~G~afV~F~~~~~a~~Al 72 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP---D---------------GRVTGEADVEFATHEDAVAAM 72 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS---S---------------SCEEEEEEEECSSSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC---C---------------CCEeeEEEEEECCHHHHHHHH
Confidence 3446899999999999999999999999955 88886532 1 236799999999999999999
Q ss_pred hccceEEcceeeccccCCCc
Q 015686 302 AFNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~ 321 (402)
.+|+..|.||.|.|..+...
T Consensus 73 ~~~~~~~~gr~i~V~~~~~~ 92 (102)
T 1wez_A 73 AKDKANMQHRYVELFLNSTA 92 (102)
T ss_dssp TTSSCCSSSSCCEEEEECCC
T ss_pred HhCCCeECCcEEEEEECCCC
Confidence 99999999999999887654
No 123
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.56 E-value=1.7e-15 Score=122.00 Aligned_cols=63 Identities=17% Similarity=0.260 Sum_probs=59.8
Q ss_pred cceeEecCCCCCCCHHHHHHHhccCCCCCC-CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLES-SVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~f~~~~G-~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
+++|||+|||+.+|+++|+++|+.| | .|..|+|++|+.+|.++|||||+|.++++|.+||++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~----G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~ 64 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSH----GVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEAN 64 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHH----TCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh----CCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhc
Confidence 4789999999999999999999999 8 7999999999999999999999999999999999754
No 124
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=5e-15 Score=119.84 Aligned_cols=75 Identities=27% Similarity=0.387 Sum_probs=67.9
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..++|||+|||+++++++|+.+|++||.|..|++.. .+|||||+|.+.++|+.|+.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~-----------------------~~g~afV~f~~~~~A~~A~~~ 72 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK-----------------------GDSFAYIQYESLDAAQAACAK 72 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS-----------------------SSCCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC-----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 368999999999999999999999999999998832 24799999999999999996
Q ss_pred ccceEEc--ceeeccccCCCc
Q 015686 303 FNMAVIG--GNHIRLDRACPP 321 (402)
Q Consensus 303 lng~~l~--Gr~I~V~~a~~~ 321 (402)
||+..|. |+.|.|.++.++
T Consensus 73 l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 73 MRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp HTTCBCSSSSCBCEEEECCCC
T ss_pred HCCCEeCCCCcEEEEEECCCC
Confidence 9999999 999999998754
No 125
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.56 E-value=7.3e-15 Score=126.42 Aligned_cols=85 Identities=26% Similarity=0.373 Sum_probs=73.8
Q ss_pred CCCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHH
Q 015686 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (402)
Q Consensus 221 e~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~A 300 (402)
+....++|||+|||+++++++|+.+|+.||.|..|+|+..+. + +.++|||||+|.+.++|..|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~A 100 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRE--T---------------RQSRGYGFVKFQSGSSAQQA 100 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETT--T---------------TEEEEEEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC--C---------------CCcceEEEEEECCHHHHHHH
Confidence 344578999999999999999999999999999999966432 1 22569999999999999999
Q ss_pred Hh-ccceEEcceeeccccCCCcc
Q 015686 301 LA-FNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 301 l~-lng~~l~Gr~I~V~~a~~~~ 322 (402)
|. |||..|.|+.|.|.++....
T Consensus 101 ~~~l~g~~~~g~~l~v~~a~~~~ 123 (139)
T 1u6f_A 101 IAGLNGFNILNKRLKVALAASGH 123 (139)
T ss_dssp HHHTTTEECSSCEEEEEESSCCC
T ss_pred HHHhCCCEECCeEEEEEECCCCC
Confidence 96 99999999999999987654
No 126
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.56 E-value=4.5e-15 Score=127.12 Aligned_cols=83 Identities=18% Similarity=0.256 Sum_probs=70.9
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeE--EEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHH
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDS--VRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~--vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~A 300 (402)
...++|||+|||+++++++|+.+|+.||.|.. |+|++++. + ++++|||||+|.+. +|..|
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~--t---------------g~~rG~aFV~f~~~-~a~~A 82 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQ--T---------------QLNRGFAFIQLSTI-EAAQL 82 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSS--S---------------SSBCSCEEEECCHH-HHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCC--C---------------CCcceEEEEEECCH-HHHHH
Confidence 44689999999999999999999999999976 88855331 1 33679999999999 99999
Q ss_pred Hh-ccce----EEcceeeccccCCCccc
Q 015686 301 LA-FNMA----VIGGNHIRLDRACPPRK 323 (402)
Q Consensus 301 l~-lng~----~l~Gr~I~V~~a~~~~k 323 (402)
|. |||. .|.|+.|.|.++.+...
T Consensus 83 i~~l~g~~~~~~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 83 LQILQALHPPLTIDGKTINVEFAKGSKR 110 (131)
T ss_dssp HHHHTTCCCSCCGGGCCCCCEECCCSCC
T ss_pred HHHhcCCCCCccCCCEEEEEEECCCCCC
Confidence 95 9999 99999999999976543
No 127
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.56 E-value=6.2e-15 Score=124.44 Aligned_cols=80 Identities=25% Similarity=0.372 Sum_probs=71.2
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhcc
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ln 304 (402)
.++|||+|||+++++++|+.+|++||.|..|+|+..+. + +.++|||||+|.+.++|..||.||
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~A~~l~ 98 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKF--S---------------GHPKGYAYIEFAERNSVDAAVAMD 98 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECT--T---------------SSCEEEEEEEESSHHHHHHHHTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC--C---------------CCcccEEEEEECCHHHHHHHHhcC
Confidence 58999999999999999999999999999999866431 1 235699999999999999999999
Q ss_pred ceEEcceeeccccCCCc
Q 015686 305 MAVIGGNHIRLDRACPP 321 (402)
Q Consensus 305 g~~l~Gr~I~V~~a~~~ 321 (402)
|..|.|+.|.|.++...
T Consensus 99 g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 99 ETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp TCEETTEECEEEESSCC
T ss_pred CCeECCeEEEEEECCCC
Confidence 99999999999998653
No 128
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.56 E-value=2.4e-15 Score=124.34 Aligned_cols=82 Identities=15% Similarity=0.092 Sum_probs=71.0
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhcCC---eeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHH
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGE---IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~G~---I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~ 298 (402)
....++|||+|||+++|+++|+.+|+.||. |..|+|+..+ . ++++|||||+|.+.++|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~----~--------------g~~~G~afV~F~~~~~a~ 69 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR----D--------------GKRRGDALIEMESEQDVQ 69 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCT----T--------------STTCSEEEEEBSSHHHHH
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECC----C--------------CCEeeEEEEEECCHHHHH
Confidence 345789999999999999999999999998 8888885422 1 236799999999999999
Q ss_pred HHHhccceEEcceeeccccCCCc
Q 015686 299 AALAFNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 299 ~Al~lng~~l~Gr~I~V~~a~~~ 321 (402)
.||.+|+..|.|+.|.|.++.+.
T Consensus 70 ~Al~~~~~~~~gr~i~V~~a~~~ 92 (107)
T 2lmi_A 70 KALEKHRMYMGQRYVEVYEINNE 92 (107)
T ss_dssp HHHTTTTCCSSSSCCCCEECCHH
T ss_pred HHHHhCcceeCCeEEEEEECCHH
Confidence 99999999999999999988643
No 129
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.56 E-value=4.8e-15 Score=125.47 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=71.6
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
....++|||+|||+++++++|+.+|+.||.|..|.|+..+. + +.++|||||+|.+.++|..||
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~A~ 81 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR--T---------------GYLKGYTLVEYETYKEAQAAM 81 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTT--T---------------SSBCSCEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--C---------------CccceEEEEEECCHHHHHHHH
Confidence 34478999999999999999999999999999998854321 1 235699999999999999999
Q ss_pred h-ccceEEcceeeccccCCCc
Q 015686 302 A-FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a~~~ 321 (402)
. |||..|.|+.|.|.++.+.
T Consensus 82 ~~l~g~~~~g~~l~v~~a~~~ 102 (126)
T 3ex7_B 82 EGLNGQDLMGQPISVDWCFVR 102 (126)
T ss_dssp HHHTTCBSSSSBCEEEESEES
T ss_pred HHhCCCeeCCeEEEEEEecCC
Confidence 5 9999999999999998644
No 130
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.55 E-value=1.3e-14 Score=124.38 Aligned_cols=80 Identities=29% Similarity=0.436 Sum_probs=68.9
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
....++|||+|||+++++++|+.+|+.||.|..|+|+..+. + +.++|||||+|.+.++|..||
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~A~ 122 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE--T---------------EKHRGFAFVEFELAEDAAAAI 122 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTT--T---------------CCCCSEEEEEESCHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCC--C---------------CCcCcEEEEEECCHHHHHHHH
Confidence 34579999999999999999999999999999998854321 1 236799999999999999999
Q ss_pred h-ccceEEcceeeccccC
Q 015686 302 A-FNMAVIGGNHIRLDRA 318 (402)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a 318 (402)
. |||..|.|+.|.|.+|
T Consensus 123 ~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 123 DNMNESELFGRTIRVNLA 140 (140)
T ss_dssp HHSTEEEETTEEEEEEC-
T ss_pred HHhCCCEECCEEEEEEeC
Confidence 5 9999999999999874
No 131
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=4.6e-15 Score=120.02 Aligned_cols=81 Identities=21% Similarity=0.277 Sum_probs=69.4
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH-h
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al-~ 302 (402)
..++|||+|||+++++++|+.+|..||.|..+.++..+ .+ ++++|||||+|.+.++|+.|| .
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~--~~---------------g~~~g~afV~f~~~~~a~~Ai~~ 76 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN--EK---------------GMPTGEAMVAFESRDEATAAVID 76 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEEC--SS---------------SCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEEC--CC---------------CCeeeEEEEEECCHHHHHHHHHH
Confidence 36889999999999999999999999999877665432 11 235699999999999999999 5
Q ss_pred ccceEEcceeeccccCCCc
Q 015686 303 FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~ 321 (402)
|||..|.|+.|.|.++..+
T Consensus 77 l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 77 LNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp TTTCEETTEECEEEESSCS
T ss_pred hCCCeeCCeEEEEEEcCCC
Confidence 9999999999999998643
No 132
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.55 E-value=2.2e-15 Score=120.04 Aligned_cols=78 Identities=24% Similarity=0.394 Sum_probs=66.7
Q ss_pred cEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-cc
Q 015686 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FN 304 (402)
Q Consensus 226 ~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-ln 304 (402)
++|||+|||+++++++|+.+|++||.|..|+|+..+. + +.++|||||+|.+.+ |..|+. ||
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~-a~~a~~~l~ 63 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRE--T---------------KKPKGFGFVEMQEES-VSEAIAKLD 63 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSS--S---------------CCCCEEEEEEECTTH-HHHHHHTSC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCC--C---------------CCcceEEEEEECCHH-HHHHHHHhC
Confidence 6899999999999999999999999999999854321 1 236799999999999 999996 99
Q ss_pred ceEEcceeeccccCCCc
Q 015686 305 MAVIGGNHIRLDRACPP 321 (402)
Q Consensus 305 g~~l~Gr~I~V~~a~~~ 321 (402)
|..|.|+.|.|.++.+.
T Consensus 64 g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 64 NTDFMGRTIRVTEANPK 80 (90)
T ss_dssp SSCCSSSSCSEEEC---
T ss_pred CCEECCeEEEEEEcCCC
Confidence 99999999999998754
No 133
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=7.7e-15 Score=125.92 Aligned_cols=78 Identities=23% Similarity=0.327 Sum_probs=67.8
Q ss_pred cccEEEEeCCCCcCcHHHHH----HHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHH
Q 015686 224 LLRTIFVGNLPLKVKKKTLI----KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~----~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~ 299 (402)
..++|||+|||+.+++++|+ .+|++||.|..|.+.. + +.++|||||+|.+.++|..
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~-----~---------------~~~rG~aFV~F~~~~~A~~ 87 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL-----S---------------DDNSGKAYIVFATQESAQA 87 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC-----C---------------CSSCCCEEEEESSHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc-----C---------------CCcCCEEEEEECCHHHHHH
Confidence 46899999999999999876 6999999998887721 1 2256999999999999999
Q ss_pred HHh-ccceEEcceeeccccCCCc
Q 015686 300 ALA-FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 300 Al~-lng~~l~Gr~I~V~~a~~~ 321 (402)
|+. |||..|.|+.|.|.++..+
T Consensus 88 Ai~~lng~~l~gr~l~V~~a~~~ 110 (127)
T 2a3j_A 88 FVEAFQGYPFQGNPLVITFSETP 110 (127)
T ss_dssp HHHHSTTCCCTTSCCEEEECCCC
T ss_pred HHHHHCCCEeCCCEEEEEEccCc
Confidence 995 9999999999999998754
No 134
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.55 E-value=1.4e-14 Score=120.01 Aligned_cols=74 Identities=26% Similarity=0.479 Sum_probs=67.6
Q ss_pred cccEEEEeCCCCc-CcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH-
Q 015686 224 LLRTIFVGNLPLK-VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (402)
Q Consensus 224 ~~~tVfVgNLP~~-vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al- 301 (402)
..++|||+|||++ +++++|+.+|++||.|..|.| ++|||||+|.+.++|+.||
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------------------------~~g~afV~f~~~~~A~~A~~ 80 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------------------------HKGYAFVQYSNERHARAAVL 80 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------------------------ETTEEEEECSSSHHHHHHHH
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------------------------eCCEEEEEECCHHHHHHHHH
Confidence 3589999999999 999999999999999999987 1389999999999999999
Q ss_pred hccceEEcceeeccccCCCcc
Q 015686 302 AFNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~ 322 (402)
.|||..|.|+.|.|.++..+.
T Consensus 81 ~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 81 GENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp HHTTCEETTEECCEEESCCCC
T ss_pred HcCCCEECCeEEEEEECCCCC
Confidence 599999999999999997543
No 135
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.55 E-value=1.6e-15 Score=123.57 Aligned_cols=81 Identities=19% Similarity=0.203 Sum_probs=68.7
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|+.||.|.. .++... ..+.++|||||+|.+.++|+.||.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~-----------------~~g~~~g~afV~f~~~~~a~~A~~ 76 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDV-----------------RTGTNRKFGYVDFESAEDLEKALE 76 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEE-----------------EEETTTTEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecC-----------------CCCCcCcEEEEEECCHHHHHHHHh
Confidence 34689999999999999999999999998876 332211 123467999999999999999999
Q ss_pred ccceEEcceeeccccCCCc
Q 015686 303 FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~ 321 (402)
|||..|.|+.|.|.++.++
T Consensus 77 l~g~~~~g~~l~V~~a~~~ 95 (101)
T 1fj7_A 77 LTGLKVFGNEIKLEKPKGR 95 (101)
T ss_dssp GGGCCBTTBCCEEECCSCC
T ss_pred cCCcEECCcEEEEEEcCCC
Confidence 9999999999999998754
No 136
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.55 E-value=1e-14 Score=119.40 Aligned_cols=65 Identities=20% Similarity=0.272 Sum_probs=60.9
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
...++|||+|||+.+|+++|+++|+.| |.|..|+|++|+.+|.++|||||+|.++++|.+||+.|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~l 81 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSI----GEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHh
Confidence 345789999999999999999999999 99999999999999999999999999999999999753
No 137
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.7e-14 Score=119.27 Aligned_cols=76 Identities=14% Similarity=0.184 Sum_probs=68.6
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|.+||.|..|.|+. . |||||+|.+.++|+.||.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~-----------------------~-g~afV~f~~~~~a~~Ai~ 68 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR-----------------------D-GTGVVEFVRKEDMTYAVR 68 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEET-----------------------T-TEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEec-----------------------C-CEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999999999998832 1 699999999999999996
Q ss_pred -ccceEEcc-----eeeccccCCCcc
Q 015686 303 -FNMAVIGG-----NHIRLDRACPPR 322 (402)
Q Consensus 303 -lng~~l~G-----r~I~V~~a~~~~ 322 (402)
||+..|.| +.|.|.++.++.
T Consensus 69 ~l~g~~~~g~~~~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 69 KLDNTKFRSHEGETAYIRVKVDGPRS 94 (108)
T ss_dssp HSSSEEEECTTSCEEEEEEEESSCCS
T ss_pred HHCcCCccCCcCcceEEEEEeCCCCC
Confidence 99999999 999999987653
No 138
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.55 E-value=3.7e-15 Score=119.71 Aligned_cols=78 Identities=21% Similarity=0.300 Sum_probs=68.3
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
.++|||+|||+++++++|+.+|.+||.|..+.++..+ .+ ++++|||||+|.+.++|+.||. |
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~--~~---------------g~~~g~afV~f~~~~~a~~Ai~~l 77 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN--EK---------------GMPTGEAMVAFESRDEATAAVIDL 77 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEEC--TT---------------SCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeC--CC---------------CCEeeEEEEEECCHHHHHHHHHHh
Confidence 5899999999999999999999999999877775532 11 2356999999999999999996 9
Q ss_pred cceEEcceeeccccCC
Q 015686 304 NMAVIGGNHIRLDRAC 319 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~ 319 (402)
|+..|.|+.|.|.++.
T Consensus 78 ~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 78 NDRPIGSRKVKLSGPS 93 (95)
T ss_dssp TTCEETTEECEEECCC
T ss_pred CCCeECCcEEEEEecc
Confidence 9999999999999875
No 139
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=2.9e-15 Score=115.51 Aligned_cols=75 Identities=20% Similarity=0.366 Sum_probs=65.3
Q ss_pred cEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-cc
Q 015686 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FN 304 (402)
Q Consensus 226 ~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-ln 304 (402)
++|||+|||+++++++|+.+|++||.|..++|+..+. + +.++|||||.|.+.++|..|+. ++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPL--T---------------KRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCC--S---------------SSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCC--C---------------CCcCceEEEEEcCHHHHHHHHHhCC
Confidence 4799999999999999999999999999999855321 1 2367999999999999999997 66
Q ss_pred ceEEcceeeccccC
Q 015686 305 MAVIGGNHIRLDRA 318 (402)
Q Consensus 305 g~~l~Gr~I~V~~a 318 (402)
..|.|+.|.|.++
T Consensus 64 -~~~~g~~l~v~~a 76 (77)
T 1uaw_A 64 -HELDSKTIDPKVA 76 (77)
T ss_dssp -CCCSSCCCEEEEC
T ss_pred -CccCCEEEEEEec
Confidence 9999999999876
No 140
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=3.3e-15 Score=120.88 Aligned_cols=73 Identities=27% Similarity=0.486 Sum_probs=67.2
Q ss_pred cccEEEEeCCCC-cCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 224 LLRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 224 ~~~tVfVgNLP~-~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
..++|||+|||+ ++++++|+.+|++||.|..|+|. +|||||+|.+.++|..|+.
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------------------------~g~afV~f~~~~~A~~A~~ 63 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------------------------NAFGFIQFDNPQSVRDAIE 63 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------------------------TTEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------------------------CCEEEEEECCHHHHHHHHH
Confidence 478999999999 99999999999999999999882 3799999999999999996
Q ss_pred -ccceEEcceeeccccCCCc
Q 015686 303 -FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~ 321 (402)
|||..|.|+.|.|.++.+.
T Consensus 64 ~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 64 CESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp HHTCSSCBTTTBCEEEEECC
T ss_pred HcCCCeeCCcEEEEEEcCcC
Confidence 9999999999999998654
No 141
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=3e-15 Score=124.87 Aligned_cols=72 Identities=18% Similarity=0.268 Sum_probs=66.0
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
.++|||+|||+++++++|+.+|++||.|..|+|+. ++|||||+|.+.++|+.||. |
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----------------------~~g~afV~f~~~~~A~~Ai~~l 66 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----------------------GGITAIVEFLEPLEARKAFRHL 66 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----------------------SSSCEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----------------------CCCEEEEEeCCHHHHHHHHHHh
Confidence 68999999999999999999999999998888721 35899999999999999996 9
Q ss_pred cceEEcceeeccccCC
Q 015686 304 NMAVIGGNHIRLDRAC 319 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~ 319 (402)
||..|.|+.|.|.++.
T Consensus 67 ~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 67 AYSKFHHVPLYLEWAP 82 (111)
T ss_dssp TTCBSSSSBCEEEEEE
T ss_pred CCCEECCeEEEEEECC
Confidence 9999999999999875
No 142
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.55 E-value=5.6e-15 Score=119.14 Aligned_cols=78 Identities=26% Similarity=0.329 Sum_probs=69.1
Q ss_pred cccEEEEeCCCCcCcHHHHH----HHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHH
Q 015686 224 LLRTIFVGNLPLKVKKKTLI----KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~----~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~ 299 (402)
..++|||+|||+++++++|+ .+|++||.|..|.++. + +.++|||||+|.+.++|..
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~-----~---------------~~~~g~afV~f~~~~~A~~ 66 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR-----S---------------LKMRGQAFVIFKEVSSATN 66 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH-----H---------------HHHTTCEEEEESSHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc-----C---------------CCcCcEEEEEeCCHHHHHH
Confidence 46899999999999999999 9999999999988731 1 1256899999999999999
Q ss_pred HHh-ccceEEcceeeccccCCCc
Q 015686 300 ALA-FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 300 Al~-lng~~l~Gr~I~V~~a~~~ 321 (402)
|+. |||..|.|+.|.|.++.++
T Consensus 67 A~~~l~g~~~~g~~l~v~~a~~~ 89 (97)
T 1nu4_A 67 ALRSMQGFPFYDKPMRIQYAKTD 89 (97)
T ss_dssp HHHHHTTCEETTEECEEEECSSC
T ss_pred HHHHhCCCEECCcEEEEEEccCC
Confidence 996 9999999999999998754
No 143
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.5e-14 Score=119.14 Aligned_cols=83 Identities=19% Similarity=0.297 Sum_probs=69.5
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCC-eeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGE-IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~-I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
..++|||+|||+++++++|+.+|..||. |..|.|+. .+.. .+.++|||||+|.+.++|..|+.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~---~~~~-------------~g~~~g~afV~f~~~~~A~~A~~ 70 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA---SAAD-------------KMKNRGFAFVEYESHRAAAMARR 70 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCS---SSCT-------------TTTTCCEEEEEESSHHHHHHHHT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEc---cCCC-------------CCCcCcEEEEEecCHHHHHHHHH
Confidence 3689999999999999999999999998 99998741 1111 12367999999999999999996
Q ss_pred -cc--ceEEcceeeccccCCCcc
Q 015686 303 -FN--MAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 303 -ln--g~~l~Gr~I~V~~a~~~~ 322 (402)
|| +..|.|+.|.|.++.++.
T Consensus 71 ~l~~g~~~~~g~~l~V~~a~~~~ 93 (109)
T 2dis_A 71 KLMPGRIQLWGHQIAVDWAEPEI 93 (109)
T ss_dssp TTTTCCSCBTTBCCEEEESCSSC
T ss_pred HhhCCCceecCCeEEEEEcCCCC
Confidence 85 589999999999997653
No 144
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.54 E-value=1.2e-14 Score=120.78 Aligned_cols=76 Identities=21% Similarity=0.326 Sum_probs=69.1
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
....++|||+|||+++++++|+.+|++||.|..|+|+ +|||||+|.+.++|..|+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------------------------kg~afV~f~~~~~A~~Ai 82 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------------------------NGFAFVEFEEAESAAKAI 82 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------------------------TTEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHH
Confidence 3447899999999999999999999999999999883 279999999999999999
Q ss_pred h-ccceEEcceeeccccCCCcc
Q 015686 302 A-FNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a~~~~ 322 (402)
. |||..|.|+.|.|.++.++.
T Consensus 83 ~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 83 EEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp HHHTTCEETTEECEEESCSCCC
T ss_pred HHcCCCEECCeEEEEEEecCCC
Confidence 6 99999999999999987643
No 145
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.54 E-value=1.6e-14 Score=126.80 Aligned_cols=83 Identities=25% Similarity=0.381 Sum_probs=72.0
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|+.||.|..|+|+.++ .+ +.++|||||+|.+.++|..||.
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~--~~---------------g~~~g~afV~f~~~~~a~~A~~ 130 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR--YT---------------KESRGFAFVRFHDKRDAEDAMD 130 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCS--SC---------------TTSCCEEEEEESBHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC--CC---------------CccceEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999999999885432 11 3367999999999999999996
Q ss_pred -ccceEEcceeeccccCCCcc
Q 015686 303 -FNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~~ 322 (402)
|||..|.|+.|.|.++.++.
T Consensus 131 ~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 131 AMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp HSTTEESSSSEEEEEEECCSS
T ss_pred HhCCCEECCeEEEEEECCCCC
Confidence 99999999999999987643
No 146
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.54 E-value=9.5e-15 Score=119.11 Aligned_cols=78 Identities=17% Similarity=0.384 Sum_probs=69.3
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhc
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~l 303 (402)
..++|||+|||+++++++|+.+|+.||.|..|+|+..+ + +.++|||||+|.+.++|+.|+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~---------------g~~~g~afV~f~~~~~a~~Ai~- 68 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR---T---------------GVSKGYGFVSFYNDVDVQKIVE- 68 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT---T---------------SCEEEEEEEEESSCCCHHHHTT-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC---C---------------CCccceEEEEECCHHHHHHHHh-
Confidence 46899999999999999999999999999999986542 2 2356999999999999999999
Q ss_pred cceEEcceeeccccCCC
Q 015686 304 NMAVIGGNHIRLDRACP 320 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~ 320 (402)
++..|+|+.|.|.++.+
T Consensus 69 ~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 69 SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp CCCEETTEECEEEEEEE
T ss_pred CCCeECCEEEEEEECCc
Confidence 99999999999988764
No 147
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=4.5e-15 Score=124.80 Aligned_cols=76 Identities=18% Similarity=0.253 Sum_probs=66.7
Q ss_pred CcccEEEEeCCCCc-CcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 223 KLLRTIFVGNLPLK-VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 223 ~~~~tVfVgNLP~~-vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
...++|||+|||++ +++++|+.+|++||.|.+|+|++ ++|||||+|.+.++|..|+
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----------------------~kg~aFVef~~~~~A~~Ai 79 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----------------------MKSQAFIEMETREDAMAMV 79 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----------------------TTTEEEEECSSHHHHHHHH
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----------------------CCCEEEEEECCHHHHHHHH
Confidence 34789999999998 99999999999999999999832 3589999999999999999
Q ss_pred h-ccc--eEEcceeeccccCCCc
Q 015686 302 A-FNM--AVIGGNHIRLDRACPP 321 (402)
Q Consensus 302 ~-lng--~~l~Gr~I~V~~a~~~ 321 (402)
. ||+ ..|.|+.|.|.++...
T Consensus 80 ~~l~~~~~~l~Gr~l~V~~a~~~ 102 (112)
T 1x4f_A 80 DHCLKKALWFQGRCVKVDLSEKY 102 (112)
T ss_dssp HHHHHSCCCSSSSCCEEEEECSC
T ss_pred HHhccCCceECCEEEEEEECccc
Confidence 6 654 5699999999998654
No 148
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1e-14 Score=116.98 Aligned_cols=75 Identities=15% Similarity=0.218 Sum_probs=66.2
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCC-eeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGE-IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~-I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
..++|||+|||+++++++|+.+|++||. |..+.++ ++|||||+|.+.++|..|+.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------------------------~~g~afV~f~~~~~A~~A~~ 62 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------------------------KSGYAFVDYPDQNWAIRAIE 62 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------------------------ETTEEEECCSCHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------------------------CCCEEEEEECCHHHHHHHHH
Confidence 4689999999999999999999999999 6555541 24899999999999999996
Q ss_pred -ccc-eEEcceeeccccCCCcc
Q 015686 303 -FNM-AVIGGNHIRLDRACPPR 322 (402)
Q Consensus 303 -lng-~~l~Gr~I~V~~a~~~~ 322 (402)
||| ..|.|+.|.|.++.++.
T Consensus 63 ~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 63 TLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp HHTTTCEETTEECEEEECCCCC
T ss_pred HccCCeeECCEEEEEEEccCcc
Confidence 999 99999999999997653
No 149
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.53 E-value=1.9e-14 Score=121.64 Aligned_cols=81 Identities=14% Similarity=0.236 Sum_probs=71.4
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|+.||.|..|+|+..+ + +.++|||||+|.+.++|..|+.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~---------------g~~~g~afV~f~~~~~A~~Ai~ 94 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR---S---------------GRSLGTADVHFERRADALKAMK 94 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS---S---------------SSCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC---C---------------CCEeeEEEEEECCHHHHHHHHH
Confidence 446899999999999999999999999999999985532 1 2356999999999999999997
Q ss_pred -ccceEEcceeeccccCCCc
Q 015686 303 -FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~ 321 (402)
|||..|.|+.|.|.++...
T Consensus 95 ~l~g~~~~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 95 QYKGVPLDGRPMDIQLVASQ 114 (124)
T ss_dssp HHTTEESSSCEEEEEEECCT
T ss_pred HcCCCEECCcEEEEEEeCCC
Confidence 9999999999999998653
No 150
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.53 E-value=6.6e-15 Score=119.99 Aligned_cols=65 Identities=15% Similarity=0.291 Sum_probs=60.0
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCC--CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLES--SVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G--~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..-.||||+|||+.+|+++|+++|++| | .|..|+|++|+.+|.++|||||+|.++++|.+||+.|
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~----G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~l 73 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPY----ASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQIL 73 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTT----CCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHH
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhh----CCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHh
Confidence 346899999999999999999999999 7 4779999999999999999999999999999999863
No 151
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.53 E-value=2.4e-14 Score=125.85 Aligned_cols=82 Identities=20% Similarity=0.293 Sum_probs=72.0
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..++|||+|||+++++++|+.+|+.||.|..|.|+..+. + +.++|||||+|.+.++|..||.
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~A~~Ai~~ 100 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKM--K---------------KTACGFCFVEYYSRADAENAMRY 100 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT--T---------------CCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--C---------------CccceEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999865432 1 2356999999999999999997
Q ss_pred ccceEEcceeeccccCCCcc
Q 015686 303 FNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~ 322 (402)
||+..|.|+.|.|.++.+..
T Consensus 101 l~g~~~~g~~l~V~~a~~~~ 120 (156)
T 1h2v_Z 101 INGTRLDDRIIRTDWDAGFK 120 (156)
T ss_dssp TTTSEETTEECEEEEESCCC
T ss_pred hCCCEECCeEEEEEECCCCC
Confidence 99999999999999997543
No 152
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.6e-14 Score=116.26 Aligned_cols=80 Identities=26% Similarity=0.305 Sum_probs=67.6
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
....++|||+|||+++++++|+.+|++||.| +++.. .. +.++|||||+|.+.++|+.||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~---~~---------------g~~~g~afV~f~~~~~A~~A~ 70 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN---QN---------------GKSKGYAFIEFASFEDAKEAL 70 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC---SS---------------SCBCSEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC---CC---------------CCEeeEEEEEECCHHHHHHHH
Confidence 3447999999999999999999999999976 34221 11 235699999999999999999
Q ss_pred h-ccceEEcceeeccccCCCcc
Q 015686 302 A-FNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a~~~~ 322 (402)
. ||+..|.|+.|.|.++.++.
T Consensus 71 ~~l~g~~~~g~~l~v~~a~~~~ 92 (101)
T 2fc9_A 71 NSCNKREIEGRAIRLELQGPRG 92 (101)
T ss_dssp HHTSSEEETTEEEEEEECSSCC
T ss_pred HHhCCCEeCCeEEEEEEcCCCC
Confidence 7 99999999999999997654
No 153
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.3e-15 Score=125.93 Aligned_cols=80 Identities=16% Similarity=0.276 Sum_probs=68.3
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhc
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~l 303 (402)
..++|||+|||+++++++|+.+|..||.|..+.++... .+ ++++|||||+|.+.++|..||.|
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~--~~---------------g~~~G~afV~F~~~~~a~~Al~~ 86 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYG--PN---------------GKATGEGFVEFRNEADYKAALCR 86 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEEC--TT---------------SSEEEEEEEEBSSSHHHHHHHTS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEEC--CC---------------CCCCeEEEEEECCHHHHHHHHHh
Confidence 36899999999999999999999999999774443321 12 23569999999999999999999
Q ss_pred cceEEcceeeccccCCC
Q 015686 304 NMAVIGGNHIRLDRACP 320 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~ 320 (402)
|+..|.|+.|.|.++..
T Consensus 87 ~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 87 HKQYMGNRFIQVHPITK 103 (124)
T ss_dssp CSBCSTTSCBEEEEECH
T ss_pred CCCeECCcEEEEEECCH
Confidence 99999999999998864
No 154
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.6e-14 Score=120.25 Aligned_cols=83 Identities=19% Similarity=0.260 Sum_probs=68.0
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..++|||+|||+++++++|+.+|+.||.|..+.+..... + +.++|||||+|.+.++|..||.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~---------------g~~~g~afV~f~~~~~a~~Ai~~ 86 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM--T---------------GRMRGQAFITFPNKEIAWQALHL 86 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE--C---------------SSSCSEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC--C---------------CccceEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999984332211111 1 2356999999999999999996
Q ss_pred ccceEEcceeeccccCCCccc
Q 015686 303 FNMAVIGGNHIRLDRACPPRK 323 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k 323 (402)
|||..|.|+.|.|.++.++..
T Consensus 87 l~g~~~~g~~l~v~~a~~~~~ 107 (115)
T 2cpx_A 87 VNGYKLYGKILVIEFGKNKKQ 107 (115)
T ss_dssp STTCBCSSCBCEEEECCCCSC
T ss_pred hCCCEeCCcEEEEEEccCCCC
Confidence 999999999999999976543
No 155
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.52 E-value=2.5e-14 Score=119.40 Aligned_cols=65 Identities=23% Similarity=0.204 Sum_probs=61.6
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.+.++|||+|||+.+++++|+++|+.| |.|..|+|++|+.+|.++|||||+|.+.++|.+||+.|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~----G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~l 68 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKY----GEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNL 68 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhc----CCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHh
Confidence 467899999999999999999999999 99999999999999999999999999999999999753
No 156
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=7.7e-15 Score=125.27 Aligned_cols=78 Identities=18% Similarity=0.301 Sum_probs=67.7
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCe----eEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHH
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEI----DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I----~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~A 300 (402)
.++|||+|||+++|+++|+++|+.||.| ..|+|+.+. + ++++|||||+|.+.++|++|
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~---~---------------gr~~G~aFV~F~~~~~A~~A 84 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP---D---------------GRPTGDAFVLFACEEYAQNA 84 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT---T---------------SCEEEEEEECCSSHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC---C---------------CCEeeEEEEEECCHHHHHHH
Confidence 5899999999999999999999999975 578885431 2 23569999999999999999
Q ss_pred HhccceEEcceeeccccCCC
Q 015686 301 LAFNMAVIGGNHIRLDRACP 320 (402)
Q Consensus 301 l~lng~~l~Gr~I~V~~a~~ 320 (402)
|..|+..|.||.|.|..+.+
T Consensus 85 l~~~~~~l~gR~i~V~~a~~ 104 (123)
T 2dha_A 85 LRKHKDLLGKRYIELFRSTA 104 (123)
T ss_dssp HTTTTEESSSCEECCEEECH
T ss_pred HHhCCCeeCCeEEEEEECCH
Confidence 98899999999999988754
No 157
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.52 E-value=1.1e-14 Score=125.80 Aligned_cols=82 Identities=26% Similarity=0.389 Sum_probs=71.3
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..++|||+|||+++++++|+.+|+.||.|..|+|+..+. + +.++|||||+|.+.++|+.||.
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~---------------g~~~G~afV~F~~~~~A~~Ai~~ 108 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRY--T---------------KESRGFAFVRFHDKRDAEDAMDA 108 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSS--S---------------SSCCSCCEEECSCHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC--C---------------CccceEEEEEECCHHHHHHHHHH
Confidence 468899999999999999999999999999998854221 1 2367999999999999999996
Q ss_pred ccceEEcceeeccccCCCcc
Q 015686 303 FNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~ 322 (402)
|||..|.|+.|.|.++.+..
T Consensus 109 l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 109 MDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp TTTCCSSSSCCEEEECCCCC
T ss_pred cCCCEECCEEEEEEECCCCC
Confidence 99999999999999987543
No 158
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.51 E-value=2e-14 Score=127.86 Aligned_cols=82 Identities=20% Similarity=0.253 Sum_probs=71.1
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|++||.|..|.|+..+. + +.++|||||+|.+.++|..||.
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~--~---------------g~~~g~afV~f~~~~~A~~Ai~ 132 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRR--T---------------GFSKGYALVEYETHKQALAAKE 132 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT--T---------------SSEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCC--C---------------CcEeeEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999999999999865321 1 2356999999999999999996
Q ss_pred -ccceEEcceeeccccCCCc
Q 015686 303 -FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~ 321 (402)
|||..|.|+.|.|.++.+.
T Consensus 133 ~l~g~~~~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 133 ALNGAEIMGQTIQVDWCFVK 152 (165)
T ss_dssp HHTTCEETTEECEEEESEEC
T ss_pred HhCCCEECCEEEEEEEecCC
Confidence 9999999999999998654
No 159
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.51 E-value=1.6e-14 Score=126.06 Aligned_cols=78 Identities=21% Similarity=0.314 Sum_probs=69.7
Q ss_pred CCcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
....++|||+|||+++++++|+.+|++||.|.+|+|+.. ++|||||+|.+.++|..||
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~A~ 127 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----------------------PPGFAFVEFEDPRDAADAV 127 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----------------------SCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----------------------CCcEEEEEECCHHHHHHHH
Confidence 344789999999999999999999999999999998431 2489999999999999999
Q ss_pred h-ccceEEcceeeccccCCCc
Q 015686 302 A-FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a~~~ 321 (402)
. |||..|.|+.|.|.++.++
T Consensus 128 ~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 128 RELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHSSSCSSSSCCEEEECCCC
T ss_pred HHcCCCEECCeEEEEEEcCCC
Confidence 6 9999999999999998654
No 160
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.8e-14 Score=118.66 Aligned_cols=79 Identities=22% Similarity=0.327 Sum_probs=67.0
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..++|||+|||+++++++|+.+|+.||.|..|+|+..+ + +.++|||||+|.+.++|..||.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~---~---------------g~~~g~afV~f~~~~~a~~A~~~ 85 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS---S---------------GTSRGVGFARMESTEKCEAVIGH 85 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS---S---------------SCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC---C---------------CCcceEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999986532 1 2356999999999999999996
Q ss_pred ccceEEc--------ceeeccccCCC
Q 015686 303 FNMAVIG--------GNHIRLDRACP 320 (402)
Q Consensus 303 lng~~l~--------Gr~I~V~~a~~ 320 (402)
|||..|. ++.|.|.++.+
T Consensus 86 l~g~~~~~~~~~~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 86 FNGKFIKTPPGVSAPTEPLLCKFSGP 111 (114)
T ss_dssp HBTCCCCCCTTSCCCSSCBEEEECCC
T ss_pred hCCCEEcCCccccCCCCceeEEccCC
Confidence 9999994 56677776653
No 161
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.51 E-value=2.4e-14 Score=114.79 Aligned_cols=77 Identities=19% Similarity=0.310 Sum_probs=60.8
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
....+|||+|||+++++++|+.+|++||.|.+|+|++. ++|||||+|.+.++|+.+..
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----------------------srGfaFV~F~~~~~A~~~~~ 66 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----------------------FRAFAFVTFADDKVAQSLCG 66 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----------------------CCSEEEEEESCHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----------------------CCCEEEEEECCHHHHHHHcC
Confidence 34789999999999999999999999999999988431 45899999999999884322
Q ss_pred ccceEEcceeeccccCCCcc
Q 015686 303 FNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~ 322 (402)
. ...+.|+.|.|.++.++.
T Consensus 67 ~-~~~~~g~~v~v~~a~~k~ 85 (89)
T 3d2w_A 67 E-DLIIKGISVHISNAEPKH 85 (89)
T ss_dssp C-EEEETTEEEEEEECC---
T ss_pred C-CcccCCEEEEEEEcCCCC
Confidence 2 345679999999987543
No 162
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.3e-13 Score=110.91 Aligned_cols=76 Identities=25% Similarity=0.400 Sum_probs=65.3
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhcc
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ln 304 (402)
.++|||+|||+++++++|+.+|+.||.|..|.+ .+ .. .+ ||||+|.+.++|..||.||
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~--~~----~~---------------g~-~afV~f~~~~~a~~ai~l~ 65 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVM--DK----DK---------------GV-FAIVEMGDVGAREAVLSQS 65 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEE--CS----SS---------------CC-EEEEEESSHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE--cC----CC---------------Cc-EEEEEECCHHHHHHHHhcC
Confidence 679999999999999999999999999988722 11 00 12 9999999999999999999
Q ss_pred ceEEcceeeccccCCCcc
Q 015686 305 MAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 305 g~~l~Gr~I~V~~a~~~~ 322 (402)
|..|.|+.|.|.++..+.
T Consensus 66 g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 66 QHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp CCEETTEECCCBCSCCSC
T ss_pred CeEECCEEEEEEECCcCC
Confidence 999999999999886543
No 163
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.51 E-value=1.4e-14 Score=125.20 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=64.0
Q ss_pred ceEEEEEeechhHHHHHh-ccceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCC
Q 015686 285 VHAYIVFKSEQSTEAALA-FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDL 363 (402)
Q Consensus 285 G~aFV~F~s~e~A~~Al~-lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~ 363 (402)
-|+|++|.+...+..|+. ++|....|+. .+....+ .+...+.++|||+|||+.+++++|+++|+.|
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~---------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~--- 71 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRP---------PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKY--- 71 (135)
T ss_dssp -------------------------------CCSCCS---------CSSGGGCCCEEEECCCSSCHHHHHHHHHGGG---
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCCC---------CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhc---
Confidence 478899999999999995 8877666643 2222221 2224457899999999999999999999999
Q ss_pred CCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 364 ESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 364 ~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
|.|..|+|++++.+|.++|||||+|.+.++|..||..|
T Consensus 72 -G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l 109 (135)
T 2lea_A 72 -GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 109 (135)
T ss_dssp -SCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTT
T ss_pred -CCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHc
Confidence 99999999999889999999999999999999999754
No 164
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=9.3e-14 Score=112.38 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=66.3
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..++|||+|| ++++++|+.+|++||.|..|.|. .++|||||+|.+.++|..||.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----------------------~~~g~afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----------------------PPRNCAFVTYEKMESADQAVAE 68 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----------------------TTTTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----------------------CCCCEEEEEECCHHHHHHHHHH
Confidence 4689999996 99999999999999999999872 145899999999999999995
Q ss_pred ccceEEcceeeccccCCCcc
Q 015686 303 FNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~ 322 (402)
|||..|.|+.|.|.++.++.
T Consensus 69 l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 69 LNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp TTTEEETTEEEEEECCSSCC
T ss_pred hCCCeECCeEEEEEECCCCC
Confidence 99999999999999987653
No 165
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.50 E-value=3.1e-14 Score=122.09 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=67.1
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCee--EEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHH
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEID--SVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~--~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~A 300 (402)
...++|||+|||+++|+++|+++|+.|+ |. .|+|+.++ . ++++|||||+|.+.++|++|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~~-i~~~~v~i~~d~---~---------------GrsrGfaFV~F~~~e~A~~A 100 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGLE-IVPNGITLPVDP---E---------------GKITGEAFVQFASQELAEKA 100 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEECCCCS---S---------------SSSCSEEEEEESSTTHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCC-ceeeEEEEEECC---C---------------CCCceEEEEEECCHHHHHHH
Confidence 3468899999999999999999999995 66 77774422 1 23679999999999999999
Q ss_pred HhccceEEcceeeccccCCC
Q 015686 301 LAFNMAVIGGNHIRLDRACP 320 (402)
Q Consensus 301 l~lng~~l~Gr~I~V~~a~~ 320 (402)
|.+++..|.||.|.|..+.+
T Consensus 101 l~~~~~~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 101 LGKHKERIGHRYIEVFKSSQ 120 (126)
T ss_dssp HTTTTCCBTTBCCCCEEECH
T ss_pred HHHCCCEECCEEEEEEECCH
Confidence 99888999999999988753
No 166
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=2.1e-14 Score=115.66 Aligned_cols=77 Identities=29% Similarity=0.306 Sum_probs=66.3
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|+.||.|..+ . .. +.++|||||+|.+.++|..|+.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~------~~---------------~~~~g~afV~f~~~~~a~~A~~ 71 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-S------QD---------------GKSKGIAYIEFKSEADAEKNLE 71 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-E------ET---------------TEEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-C------CC---------------CCcceEEEEEECCHHHHHHHHH
Confidence 347899999999999999999999999987654 1 11 2256999999999999999997
Q ss_pred -ccceEEcceeeccccCCCc
Q 015686 303 -FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~ 321 (402)
|||..|.|+.|.|.++.++
T Consensus 72 ~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 72 EKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp HTTEEEETTEEEEEEECSSS
T ss_pred HhCCCEECCeEEEEEEcCCC
Confidence 9999999999999998654
No 167
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.50 E-value=6e-14 Score=110.88 Aligned_cols=65 Identities=20% Similarity=0.402 Sum_probs=61.7
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.++|.+||++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKF----GEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTT----SCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh
Confidence 3467899999999999999999999999 9999999999999999999999999999999999976
No 168
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.49 E-value=1.2e-14 Score=148.97 Aligned_cols=65 Identities=14% Similarity=0.286 Sum_probs=61.6
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.+.++|||+|||+.+|+++|..+|..| |.|..|.|+.+..+|.++|||||+|.+.++|..||..|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 164 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVY----GPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc----CCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHc
Confidence 456899999999999999999999999 99999999999989999999999999999999999765
No 169
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.23 E-value=2.1e-15 Score=126.09 Aligned_cols=84 Identities=23% Similarity=0.263 Sum_probs=71.6
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeE--------EEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeech
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDS--------VRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQ 295 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~--------vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e 295 (402)
..++|||+|||+++++++|+.+|+.||.|.. |+|+..+ . .+.++|||||+|.+.+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~--~---------------~g~~~g~afV~f~~~~ 68 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDR--E---------------TGKLKGEATVSFDDPP 68 (116)
Confidence 4689999999999999999999999999988 6664322 1 1336799999999999
Q ss_pred hHHHHHh-ccceEEcceeeccccCCCcccc
Q 015686 296 STEAALA-FNMAVIGGNHIRLDRACPPRKK 324 (402)
Q Consensus 296 ~A~~Al~-lng~~l~Gr~I~V~~a~~~~k~ 324 (402)
+|+.||. |||..|.|+.|.|.++.++...
T Consensus 69 ~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 69 SAKAAIDWFDGKEFSGNPIKVSFATRRADF 98 (116)
Confidence 9999996 9999999999999999765443
No 170
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.49 E-value=3.2e-14 Score=123.22 Aligned_cols=78 Identities=26% Similarity=0.257 Sum_probs=67.4
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEE--------EEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeech
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSV--------RIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQ 295 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~v--------ri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e 295 (402)
..++|||+|||+++++++|+.+|+.||.|..+ ++. . .+.++|||||+|.+.+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~-----~---------------~g~~~g~afV~f~~~~ 103 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM-----K---------------EGRMKGQAFIGLPNEK 103 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE-----E---------------ETTTEEEEEEECSSHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec-----c---------------CCCcccEEEEEeCCHH
Confidence 36899999999999999999999999998764 221 1 1336799999999999
Q ss_pred hHHHHHh-ccceEEcceeeccccCCCc
Q 015686 296 STEAALA-FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 296 ~A~~Al~-lng~~l~Gr~I~V~~a~~~ 321 (402)
+|..||. |||..|.|+.|.|.++...
T Consensus 104 ~A~~Ai~~lng~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 104 AAAKALKEANGYVLFGKPMVVQFARSA 130 (143)
T ss_dssp HHHHHHHHHTTBEETTEECEEEECCCS
T ss_pred HHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 9999997 9999999999999998654
No 171
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=4.3e-14 Score=113.79 Aligned_cols=76 Identities=13% Similarity=0.293 Sum_probs=67.0
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEE-EeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVR-IRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vr-i~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
.++|||+|||+++++++|+.+|+.||.|..|+ |+..+ ..|.|||+|.+.++|..|+.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~---------------------~~~~afV~f~~~~~a~~Ai~~ 73 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS---------------------ETAVVNVTYSSKDQARQALDK 73 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS---------------------SSEEEEEEESSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---------------------CCCEEEEEECCHHHHHHHHHH
Confidence 68899999999999999999999999999995 63321 23569999999999999996
Q ss_pred ccceEEcceeeccccCCCc
Q 015686 303 FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~ 321 (402)
|||..|.|+.|.|.++.+.
T Consensus 74 l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 74 LNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp HTTCBCSSCBCEEEECCCC
T ss_pred hCCCEECCcEEEEEEcCcc
Confidence 9999999999999998754
No 172
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.49 E-value=3.2e-14 Score=133.63 Aligned_cols=81 Identities=14% Similarity=0.176 Sum_probs=70.4
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcC--CeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFG--EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G--~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
..++|||+|||+++|+++|+.+|+.|| .|..|+|++++. + ++++|||||+|.+.++|.+||
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~--t---------------g~skGfaFV~f~~~~~a~~Ai 129 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRA--N---------------GQSKGFALVGVGSEASSKKLM 129 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTT--T---------------CCEEEEEEEEESCTTHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCC--C---------------CccceEEEEEECCHHHHHHHH
Confidence 367899999999999999999999999 999999966432 1 336799999999999999999
Q ss_pred h-ccceEEcceeeccccCCCc
Q 015686 302 A-FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a~~~ 321 (402)
. ||+..|.|+.|.|.++.+.
T Consensus 130 ~~lng~~~~Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 130 DLLPKRELHGQNPVVTPVNKQ 150 (229)
T ss_dssp TTSTTSCBTTBCCEEEECCHH
T ss_pred HHcCCCeECCEEeEEEECCCC
Confidence 6 9999999999999998643
No 173
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.48 E-value=1.3e-14 Score=126.52 Aligned_cols=80 Identities=18% Similarity=0.156 Sum_probs=69.2
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhc
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~l 303 (402)
..++|||+|||+++|+++|+++|++|| |..|+|+.++ . ++++|||||+|.+.++|+.||.+
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~---~---------------g~srGfaFV~F~~~e~A~~Al~~ 105 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP---D---------------GRVTGEADVEFATHEEAVAAMSK 105 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS---S---------------SCSSCCCEEECSHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC---C---------------CCCceEEEEEeCCHHHHHHHHhh
Confidence 468899999999999999999999999 6688875432 1 23679999999999999999999
Q ss_pred cceEEcceeeccccCCCcc
Q 015686 304 NMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~ 322 (402)
|+..|.|+.|.|..+..+.
T Consensus 106 ~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 106 DRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp CSCSSSSCCCCCEECCCSC
T ss_pred CCCEECCEEEEEEECCCCC
Confidence 9999999999999887543
No 174
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.48 E-value=2.9e-14 Score=113.43 Aligned_cols=72 Identities=14% Similarity=0.255 Sum_probs=65.7
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..++|||+|||+++++++|+.+|++| .|..++|. + ++|||||+|.+.++|+.|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----------~-------------~~g~afV~f~~~~~a~~Ai~~ 59 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----------R-------------NKRTAFVTLLNGEQAQNAIQM 59 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----------G-------------GGTEEEECCSCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----------C-------------CCcEEEEEECCHHHHHHHHHH
Confidence 46889999999999999999999999 89988872 1 45899999999999999996
Q ss_pred ccceEEcceeeccccCC
Q 015686 303 FNMAVIGGNHIRLDRAC 319 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~ 319 (402)
|||..+.|+.|.|.++.
T Consensus 60 l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 60 FHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp HTTEEETTEEEEEEECC
T ss_pred hCCCeECCcEEEEEEcC
Confidence 99999999999999985
No 175
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.7e-13 Score=111.07 Aligned_cols=65 Identities=17% Similarity=0.354 Sum_probs=61.5
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+.++|||+|||..+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.++|.+||+|
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 71 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKF----GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 71 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSS----SCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHh
Confidence 4567999999999999999999999999 9999999999999999999999999999999999973
No 176
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.47 E-value=4.2e-14 Score=112.99 Aligned_cols=62 Identities=19% Similarity=0.288 Sum_probs=56.7
Q ss_pred ceeEecCCCCCCCHHHHHHHhccCCCCCC--CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLES--SVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~f~~~~G--~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.+|||+|||+.+++++|+++|+.| | .|..|+|++++.+|.++|||||+|.+.++|.+||+.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~----G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l 65 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSL----GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLL 65 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTT----TCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHG
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHh----CCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHc
Confidence 579999999999999999999999 8 8999999999999999999999999999999999754
No 177
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=5.7e-14 Score=111.53 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=64.8
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhc
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~l 303 (402)
..++|||+|||+++++++|+.+|++||.|..|+|+.. ++|||||+|.+.++|+.|+..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~~~~~ 61 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----------------------FRAFAFVTFADDQIAQSLCGE 61 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----------------------CCSCCEEECSCHHHHHHTTTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----------------------CCCEEEEEECCHHHHHHHhcC
Confidence 3689999999999999999999999999999988321 358999999999999876543
Q ss_pred cceEEcceeeccccCCCccc
Q 015686 304 NMAVIGGNHIRLDRACPPRK 323 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k 323 (402)
+..+.|+.|.|.++.++..
T Consensus 62 -~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 62 -DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp -EEEETTEEEEEECCCCCCC
T ss_pred -CceeCCEEEEEEecCCCCC
Confidence 4567999999999876543
No 178
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=8e-14 Score=109.68 Aligned_cols=65 Identities=12% Similarity=0.153 Sum_probs=61.2
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.+.++|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.++|..||+.|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 67 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPY----GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 67 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTT----SCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHh
Confidence 357899999999999999999999999 99999999999999999999999999999999999753
No 179
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.1e-13 Score=114.20 Aligned_cols=63 Identities=17% Similarity=0.281 Sum_probs=59.3
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
...++|||+|||+.+|+++|+++|+.| |.|..|+|++++. |.++|||||+|.+.++|..||.+
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~----G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~ 71 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDK----GQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVET 71 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTS----SCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhc----CCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHc
Confidence 346899999999999999999999999 9999999999987 99999999999999999999973
No 180
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.4e-13 Score=111.34 Aligned_cols=66 Identities=15% Similarity=0.233 Sum_probs=62.0
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeE-EEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE-AVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~-~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+++|..| |.|. .|+|++++.+|.++|||||+|.+.++|..||+.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 72 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATM----GETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKI 72 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHT----TCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTT
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHh----CCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHH
Confidence 3467999999999999999999999999 9999 9999999999999999999999999999999854
No 181
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=108.95 Aligned_cols=64 Identities=20% Similarity=0.280 Sum_probs=59.8
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
.+.++|||+|||..+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.++|..||+.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPF----GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 356899999999999999999999999 9999999999988999999999999999999999975
No 182
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.8e-13 Score=109.61 Aligned_cols=66 Identities=15% Similarity=0.229 Sum_probs=62.1
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+++|+.| |.|..|.|++++.+|.++|||||+|.+.++|.+||..|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 77 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKY----GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 77 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTT----SCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 4567999999999999999999999999 99999999999999999999999999999999999853
No 183
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.46 E-value=1.6e-13 Score=107.15 Aligned_cols=61 Identities=23% Similarity=0.308 Sum_probs=58.8
Q ss_pred ceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
.+|||+|||+.+++++|+++|..| |.|..|+|++++.+|.++|||||+|.+.++|..|+..
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 62 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDF----PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 62 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTS----TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHH
Confidence 689999999999999999999999 9999999999999999999999999999999999975
No 184
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.8e-13 Score=110.70 Aligned_cols=66 Identities=18% Similarity=0.223 Sum_probs=61.7
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+.+|..| |.|..|+|++++.+|.++|||||+|.+.++|..||+.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 70 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAY----GPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 70 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHh
Confidence 3467899999999999999999999999 99999999999889999999999999999999999654
No 185
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.46 E-value=1e-13 Score=108.75 Aligned_cols=64 Identities=19% Similarity=0.285 Sum_probs=60.8
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
.+.++|||+|||+.+++++|+++|+.| |.|..|.|++++.+|.++|||||+|.+.++|..||+.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 68 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPF----GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 68 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGG----SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhcc----CCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHH
Confidence 467899999999999999999999999 9999999999999999999999999999999999964
No 186
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.3e-13 Score=111.08 Aligned_cols=65 Identities=26% Similarity=0.367 Sum_probs=61.0
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhcc-CCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCG-LNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~-f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+++|.. | |.|..|+|++++ +|.++|||||+|.+.++|..||+.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~----G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l 71 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVY----PSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTEC 71 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHC----TTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhC----CCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHc
Confidence 456789999999999999999999999 9 999999999998 8999999999999999999999854
No 187
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.45 E-value=1.2e-13 Score=111.40 Aligned_cols=63 Identities=21% Similarity=0.406 Sum_probs=60.0
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
++++|||+|||..+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.++|..||+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 63 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNV----GPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRN 63 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999 9999999999998999999999999999999999974
No 188
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.45 E-value=1.4e-13 Score=122.27 Aligned_cols=110 Identities=13% Similarity=0.183 Sum_probs=61.8
Q ss_pred EEEeechhHHHHHh-ccceEEc--ceeeccccCCCccccc-----------cCCCCCccCCcceeEecCCCCCCCHHHHH
Q 015686 289 IVFKSEQSTEAALA-FNMAVIG--GNHIRLDRACPPRKKL-----------KGEDAPLYDIKKTVFVGNLPFDVKDEEIY 354 (402)
Q Consensus 289 V~F~s~e~A~~Al~-lng~~l~--Gr~I~V~~a~~~~k~~-----------~~~~~~~~~~~~tLfV~NLp~~~teedL~ 354 (402)
.+|...+++..|+. +++.... |+.+.+.......... .........+.++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 78889999999885 7776554 6666655432211000 00012223457899999999999999999
Q ss_pred HHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 355 QLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 355 ~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.+|..| |.|..|.|+.++.+|.++|||||+|.+.++|..||..|
T Consensus 91 ~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 134 (165)
T 1rk8_A 91 EKFCDY----GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 134 (165)
T ss_dssp HHHGGG----SCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHhhcC----CCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHh
Confidence 999999 99999999999999999999999999999999999753
No 189
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.2e-13 Score=108.99 Aligned_cols=66 Identities=27% Similarity=0.523 Sum_probs=62.1
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+++|..| |.|..|.|++++.+|.++|||||+|.+.++|..||+.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 78 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKY----GKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 78 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTT----SCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHc
Confidence 4567899999999999999999999999 99999999999999999999999999999999999754
No 190
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.3e-13 Score=113.68 Aligned_cols=66 Identities=29% Similarity=0.414 Sum_probs=62.0
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+.+|..| |.|..|+|++++.+|.++|||||+|.+.++|..||+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~ 77 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQF----GDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAA 77 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHh
Confidence 4567899999999999999999999999 99999999999999999999999999999999999753
No 191
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2e-13 Score=109.56 Aligned_cols=64 Identities=13% Similarity=0.322 Sum_probs=60.8
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
.+.++|||+|||+.+++++|+++|+.| |.|..|.|++++.+|.++|||||+|.+.++|..||+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 66 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPF----GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 66 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 357899999999999999999999999 9999999999999999999999999999999999974
No 192
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.5e-13 Score=111.86 Aligned_cols=81 Identities=27% Similarity=0.353 Sum_probs=67.2
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|+.|+ .|+++..+ .+ +.++|||||+|.+.++|..||.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~--~~---------------~~~~g~afV~f~~~~~A~~A~~ 72 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDR--ET---------------GSSKGFGFVDFNSEEDAKAAKE 72 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECS--SS---------------CSEEEEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecC--CC---------------CCcCcEEEEEECCHHHHHHHHH
Confidence 3478999999999999999999999885 45554422 11 2356999999999999999996
Q ss_pred -ccceEEcceeeccccCCCccc
Q 015686 303 -FNMAVIGGNHIRLDRACPPRK 323 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~~k 323 (402)
||+..|.|+.|.|.++.++..
T Consensus 73 ~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 73 AMEDGEIDGNKVTLDWAKPKGE 94 (102)
T ss_dssp HHTTCEETTEECEEEECCCCCS
T ss_pred HhCCCeECCeEEEEEEecCCCC
Confidence 999999999999999976543
No 193
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=8.2e-14 Score=117.41 Aligned_cols=73 Identities=15% Similarity=0.256 Sum_probs=64.2
Q ss_pred cccEEEE--eCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHH
Q 015686 224 LLRTIFV--GNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (402)
Q Consensus 224 ~~~tVfV--gNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al 301 (402)
+.++||| ||||+++++++|+++|++||.|..|.|+. ++|||||+|.+.++|+.|+
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----------------------~rgfaFV~f~~~~~A~~Ai 80 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----------------------NKPYSFARYRTTEESKRAY 80 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----------------------TCSCEEEEESSHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----------------------CCCEEEEEECCHHHHHHHH
Confidence 3688999 77999999999999999999999887621 2489999999999999999
Q ss_pred h-ccceEE-----cceeeccccCC
Q 015686 302 A-FNMAVI-----GGNHIRLDRAC 319 (402)
Q Consensus 302 ~-lng~~l-----~Gr~I~V~~a~ 319 (402)
. |||..| .|+.|.|.++.
T Consensus 81 ~~lnG~~~~~~lg~g~~l~v~~a~ 104 (114)
T 2cq2_A 81 VTLNGKEVVDDLGQKITLYLNFVE 104 (114)
T ss_dssp HHTTTCEEECTTSCEEECEEEEES
T ss_pred HHhCCCEEccccCCCcEEEEEecc
Confidence 6 999998 68889988875
No 194
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.45 E-value=4.2e-14 Score=115.55 Aligned_cols=64 Identities=14% Similarity=0.100 Sum_probs=60.5
Q ss_pred CcceeEecCCCC------CCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 335 IKKTVFVGNLPF------DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 335 ~~~tLfV~NLp~------~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..++|||+|||+ .+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.++|.+||+.|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~----G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~l 74 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKA----GKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSF 74 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTT----SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHH
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhc----CCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 368999999999 99999999999999 99999999999999999999999999999999999753
No 195
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.45 E-value=3.2e-13 Score=112.32 Aligned_cols=66 Identities=21% Similarity=0.288 Sum_probs=62.3
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+++|..| |.|..|+|++++.+|.++|||||+|.+.++|.+||+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 77 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPF----GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 77 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 4567999999999999999999999999 99999999999889999999999999999999999864
No 196
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.45 E-value=1.6e-13 Score=113.91 Aligned_cols=66 Identities=18% Similarity=0.348 Sum_probs=59.8
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+.+|+.| |.|..|+|++++.+|.++|||||+|.+.++|..||+++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~----G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~ 87 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQF----GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 87 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTT----SCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcc----CCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC
Confidence 3457899999999999999999999999 99999999999999999999999999999999999764
No 197
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=7.5e-14 Score=107.55 Aligned_cols=62 Identities=19% Similarity=0.404 Sum_probs=59.1
Q ss_pred ceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
++|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.++|..||..|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~ 62 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQF----GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 62 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTT----SCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhC
Confidence 479999999999999999999999 99999999999989999999999999999999999864
No 198
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.6e-13 Score=110.70 Aligned_cols=66 Identities=21% Similarity=0.274 Sum_probs=62.3
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||..+++++|+++|+.| |.|..|.|++++.+|.++|||||+|.+.++|..||..|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 77 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPF----GSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 77 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTT----CCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHc
Confidence 4567999999999999999999999999 99999999999989999999999999999999999854
No 199
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.8e-13 Score=111.37 Aligned_cols=66 Identities=20% Similarity=0.345 Sum_probs=61.9
Q ss_pred ccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 332 ~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
...+.++|||+|||+.+++++|+++|..| |.|..|+|++++.++.++|||||+|.++++|..||+.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKY----GQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 73 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHH----SCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 34567999999999999999999999999 9999999999999999999999999999999999965
No 200
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.3e-13 Score=111.33 Aligned_cols=66 Identities=18% Similarity=0.236 Sum_probs=62.2
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.++|..||+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 77 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQA----GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 77 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHh
Confidence 4567999999999999999999999999 99999999999889999999999999999999999864
No 201
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.44 E-value=2.4e-13 Score=110.19 Aligned_cols=65 Identities=20% Similarity=0.156 Sum_probs=61.4
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEE--------EEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA--------VRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~--------vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+.++|||+|||+.+++++|+++|+.| |.|.. |+|++++.+|.++|||||+|.+.++|..||+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~ 82 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQI----GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDW 82 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTT----SCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh----CCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 4567999999999999999999999999 99999 99999999999999999999999999999975
No 202
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.44 E-value=8.9e-14 Score=121.70 Aligned_cols=80 Identities=20% Similarity=0.321 Sum_probs=70.3
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhcc
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ln 304 (402)
.++|||+|||+++++++|+.+|+.||.|..++++..+ .+ +.++|||||+|.+.++|..|+.++
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~--~~---------------g~~~g~afV~f~~~~~a~~A~~~~ 149 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK--DT---------------GQSRGFGFVTYDSADAVDRVCQNK 149 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSS--SS---------------STTSEEEEEEESSHHHHHHHHHCS
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcC--CC---------------CccceEEEEEECCHHHHHHHHhCC
Confidence 4689999999999999999999999999999885432 11 336799999999999999999999
Q ss_pred ceEEcceeeccccCCCc
Q 015686 305 MAVIGGNHIRLDRACPP 321 (402)
Q Consensus 305 g~~l~Gr~I~V~~a~~~ 321 (402)
|..|.|+.|.|.++.++
T Consensus 150 ~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 150 FIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp EECSSSSCEEEEECCCC
T ss_pred CEEeCCeEEEEeecCCC
Confidence 99999999999998753
No 203
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.44 E-value=1.5e-13 Score=112.61 Aligned_cols=66 Identities=15% Similarity=0.331 Sum_probs=61.8
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.++|..||+.|
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 75 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEF----GKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL 75 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHH----SCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 4467899999999999999999999999 99999999999999999999999999999999999753
No 204
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.44 E-value=3.3e-13 Score=110.35 Aligned_cols=65 Identities=23% Similarity=0.354 Sum_probs=60.3
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+.+|..| |.|..|+|++++ +|.++|||||+|.+.++|..||+.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l 76 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPF----GVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHAL 76 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHH
Confidence 3457999999999999999999999999 999999999997 7999999999999999999999753
No 205
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.9e-13 Score=112.88 Aligned_cols=66 Identities=21% Similarity=0.356 Sum_probs=62.3
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+++|..| |.|..|+|++++.++.++|||||+|.+.++|.+||++|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~ 79 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGF----GDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 79 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTT----SCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhC
Confidence 4567999999999999999999999999 99999999999999999999999999999999999865
No 206
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.4e-13 Score=112.28 Aligned_cols=66 Identities=24% Similarity=0.315 Sum_probs=62.1
Q ss_pred ccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 332 ~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
...+.++|||+|||+.+++++|+++|..| |.|..|.|++++.+|.++|||||+|.+.++|..||+.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 74 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKY----GRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA 74 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHH
Confidence 34567999999999999999999999999 9999999999999999999999999999999999985
No 207
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.6e-13 Score=110.26 Aligned_cols=65 Identities=18% Similarity=0.366 Sum_probs=61.3
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEE-EEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAV-RVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~v-rI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.+.++|||+|||+.+++++|+.+|+.| |.|..| +|++++.+|.++|||||+|.+.++|..||+.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 68 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAF----GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAM 68 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTT----SCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHc
Confidence 357899999999999999999999999 999999 99999899999999999999999999999854
No 208
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=3e-13 Score=110.81 Aligned_cols=65 Identities=14% Similarity=0.102 Sum_probs=61.3
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+.++|||+|||..+++++|+.+|+.| |.|..|.|++++.+|.++|||||+|.+.++|..||..
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 84 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEY----GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 84 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcc----CCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 3457899999999999999999999999 9999999999999999999999999999999999975
No 209
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.6e-13 Score=111.69 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=61.9
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+++|..| |.|..|+|++++.+|.++|||||+|.+.++|..||+.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 74 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPF----GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 74 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTT----SCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcc----CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 4567999999999999999999999999 99999999999999999999999999999999999753
No 210
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.43 E-value=2.3e-13 Score=124.54 Aligned_cols=78 Identities=12% Similarity=0.140 Sum_probs=68.3
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhcc
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ln 304 (402)
.++|||+|||+++++++|+.+|++||.|.+|+|++.. . +.++|||||+|.+.++|..||.+.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~---~---------------~~~kG~aFVeF~~~e~A~~A~~~~ 170 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL---H---------------KAFKGSIFVVFDSIESAKKFVETP 170 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT---T---------------CCEEEEEEEEESSHHHHHHHHHCT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC---C---------------CCcccEEEEEECCHHHHHHHHHhC
Confidence 5899999999999999999999999999999986532 1 235699999999999999999866
Q ss_pred ceEEcceeeccccCCC
Q 015686 305 MAVIGGNHIRLDRACP 320 (402)
Q Consensus 305 g~~l~Gr~I~V~~a~~ 320 (402)
+..|.|+.|.|.+...
T Consensus 171 ~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 171 GQKYKETDLLILFKDD 186 (193)
T ss_dssp TCEETTEECEEEETTT
T ss_pred CCeECCEEEEEEEhHH
Confidence 7799999999987653
No 211
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=4.6e-13 Score=109.22 Aligned_cols=65 Identities=17% Similarity=0.263 Sum_probs=61.2
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+.++|||+|||+.+++++|+.+|..| |.|..|+|++++.+|.++|||||+|.+.++|..||..
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTF----GEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGG----SCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhc----CCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 4467899999999999999999999999 9999999999999999999999999999999999973
No 212
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.42 E-value=2.1e-13 Score=123.24 Aligned_cols=81 Identities=14% Similarity=0.236 Sum_probs=71.1
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|+.||.|..|.|+..+ + +.++|||||+|.+.++|..||.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~---~---------------g~~kG~afV~F~~~~~A~~Ai~ 147 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR---S---------------GRSLGTADVHFERRADALKAMK 147 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT---T---------------SSCSCCEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---C---------------CCEeeEEEEEeCCHHHHHHHHH
Confidence 446899999999999999999999999999999985432 1 2356999999999999999996
Q ss_pred -ccceEEcceeeccccCCCc
Q 015686 303 -FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~ 321 (402)
|||..|.|+.|.|.++...
T Consensus 148 ~lng~~l~Gr~l~V~~a~~~ 167 (177)
T 2f3j_A 148 QYKGVPLDGRPMDIQLVASQ 167 (177)
T ss_dssp HSTTCBCSSSBCEEEEESSG
T ss_pred HhCCCEECCEEEEEEEecCC
Confidence 9999999999999998643
No 213
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=2.5e-13 Score=109.65 Aligned_cols=65 Identities=14% Similarity=0.284 Sum_probs=60.1
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCC---CCCCceEEEEEecCHHHHHHHHHhC
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPH---MRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~---~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.+.++|||+|||+.+++++|+++|+.| |.|..|+|++++. ++.++|||||+|.+.++|..||..|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l 70 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKV----GAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQL 70 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHh
Confidence 356899999999999999999999999 9999999999876 6689999999999999999999864
No 214
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.42 E-value=3e-13 Score=119.76 Aligned_cols=64 Identities=17% Similarity=0.301 Sum_probs=60.1
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCC--CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLES--SVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G--~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..++|||+|||+.+++++|+++|..| | .|..|+|++|+.+|.++|||||+|.+.++|..||+.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~----G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~l 119 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSI----GVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELL 119 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHT----TCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHH----CCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHc
Confidence 45899999999999999999999999 8 8999999999999999999999999999999999875
No 215
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=3e-13 Score=110.87 Aligned_cols=66 Identities=21% Similarity=0.374 Sum_probs=61.6
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeec-CCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRH-PHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d-~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+++|..| |.|..|+|+++ +.+|.++|||||+|.+.++|.+||..|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 78 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTF----GELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 78 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHcc----CCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHh
Confidence 4567999999999999999999999999 99999999999 788999999999999999999999753
No 216
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.42 E-value=4.9e-13 Score=116.28 Aligned_cols=80 Identities=21% Similarity=0.300 Sum_probs=70.3
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|+.||.|..+.++..+. + +.++|||||+|.+.++|..|+.
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~--~---------------~~~~g~afV~f~~~~~A~~A~~ 147 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ--T---------------GSSRGYGFVSFTSQDDAQNAMD 147 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTT--T---------------CCEEEEEEEEESCHHHHHHHHH
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCC--C---------------CCcceEEEEEeCCHHHHHHHHH
Confidence 3468999999999999999999999999999999865431 1 2356999999999999999996
Q ss_pred -ccceEEcceeeccccCC
Q 015686 303 -FNMAVIGGNHIRLDRAC 319 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~ 319 (402)
|||..|.|+.|.|.++.
T Consensus 148 ~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 148 SMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHTTCEETTEECEEEESC
T ss_pred HhCCCccCCcEEEEEecC
Confidence 99999999999999875
No 217
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=4.7e-13 Score=108.59 Aligned_cols=64 Identities=22% Similarity=0.324 Sum_probs=60.0
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+.++|||+|||+.+++++|+++|..| |.|..|+|+.++ +|.++|||||+|.+.++|..||+.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~ 77 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAH----GTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMK 77 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHH
Confidence 3457899999999999999999999999 999999999997 899999999999999999999965
No 218
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.42 E-value=3.1e-13 Score=112.54 Aligned_cols=66 Identities=15% Similarity=0.276 Sum_probs=61.5
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+++|..| |.|..|+|++++.+|.++|||||+|.+.++|..||+.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 87 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPF----GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 87 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGG----SCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHc
Confidence 3456899999999999999999999999 99999999999889999999999999999999999653
No 219
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.42 E-value=1.2e-13 Score=115.75 Aligned_cols=68 Identities=12% Similarity=0.130 Sum_probs=60.4
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
.++|||+|||+++++++|+.+|.+||.|..|.|+. . |||||+|.+.++|+.||. |
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~-----------------------~-g~afV~f~~~~~a~~Ai~~l 71 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR-----------------------D-GTGVVEFVRKEDMTYAVRKL 71 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECT-----------------------T-SEEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEec-----------------------C-CEEEEEECCHHHHHHHHHHh
Confidence 58899999999999999999999999999998832 1 699999999999999996 9
Q ss_pred cceEEcceeeccc
Q 015686 304 NMAVIGGNHIRLD 316 (402)
Q Consensus 304 ng~~l~Gr~I~V~ 316 (402)
||..|.|+.|.|.
T Consensus 72 ~g~~~~gr~~~~~ 84 (115)
T 3beg_B 72 DNTKFRSHEGETA 84 (115)
T ss_dssp TTCBCCCTTSCCC
T ss_pred CCCEECCcEeeeE
Confidence 9999999984443
No 220
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=3.8e-13 Score=110.07 Aligned_cols=65 Identities=18% Similarity=0.298 Sum_probs=61.5
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+.++|||+|||+.+++++|+.+|..| |.|..|+|++++.+|.++|||||+|.+.++|..||.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQY----GEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTT----SCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh
Confidence 4567999999999999999999999999 9999999999999999999999999999999999973
No 221
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.42 E-value=4e-13 Score=111.40 Aligned_cols=65 Identities=14% Similarity=0.293 Sum_probs=61.5
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+.++|||+|||+.+++++|+.+|+.| |.|..|+|++++.+|.++|||||+|.+.++|..||+.
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~ 87 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPF----GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 87 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTT----SCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHH
Confidence 4567999999999999999999999999 9999999999999999999999999999999999974
No 222
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.9e-13 Score=111.46 Aligned_cols=65 Identities=18% Similarity=0.393 Sum_probs=61.1
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.+.++|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.++|..||+.|
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~----G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 70 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEV----GPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 70 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTT----SCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHS
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhc----CCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 356899999999999999999999999 99999999999989999999999999999999999754
No 223
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.41 E-value=2.8e-13 Score=138.82 Aligned_cols=80 Identities=19% Similarity=0.311 Sum_probs=70.5
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
.++|||+|||++||+++|..+|++||.|..|.|+..+. + +.++|||||+|.+.++|..||. |
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~--t---------------g~~kG~aFV~F~~~e~A~~Ai~~l 164 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKR--S---------------GKPRGYAFIEYEHERDMHSAYKHA 164 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCC--C---------------CCccceEEEeeccHHHHHHHHHHc
Confidence 58999999999999999999999999999999854321 1 2356999999999999999995 9
Q ss_pred cceEEcceeeccccCCCc
Q 015686 304 NMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~ 321 (402)
||..|.|+.|.|.++.+.
T Consensus 165 ng~~i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 165 DGKKIDGRRVLVDVERGR 182 (437)
T ss_pred CCCEECCEEEEEEEeCCC
Confidence 999999999999998754
No 224
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.41 E-value=4.3e-13 Score=120.35 Aligned_cols=82 Identities=17% Similarity=0.371 Sum_probs=69.7
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhcc
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ln 304 (402)
.++|||+|||+++++++|+.+|+.||.|..|+|+..+. + +.++|||||+|.+.++|..||..+
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------g~~~g~afV~F~~~~~A~~A~~~~ 166 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRG--S---------------GKKRGFAFVTFDDHDSVDKIVIQK 166 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTT--T---------------CCEEEEEEEEESSHHHHHHHHHCS
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCC--C---------------CCccceEEEEECCHHHHHHHHHhC
Confidence 58899999999999999999999999999999865321 1 235699999999999999999888
Q ss_pred ceEEcceeeccccCCCccc
Q 015686 305 MAVIGGNHIRLDRACPPRK 323 (402)
Q Consensus 305 g~~l~Gr~I~V~~a~~~~k 323 (402)
|..|.|+.|.|.++.++..
T Consensus 167 ~~~~~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 167 YHTVNGHNCEVRKALSKQE 185 (196)
T ss_dssp CCEETTEECEEEECC----
T ss_pred CcEECCEEEEEEecCChhH
Confidence 9999999999999976543
No 225
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.41 E-value=4.4e-13 Score=106.02 Aligned_cols=61 Identities=25% Similarity=0.434 Sum_probs=58.5
Q ss_pred cceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHH
Q 015686 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~ 400 (402)
.++|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.++|.+||.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 66 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGC----GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA 66 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGG----CCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGG
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHh
Confidence 5799999999999999999999999 999999999999899999999999999999999983
No 226
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.41 E-value=3.2e-13 Score=120.66 Aligned_cols=78 Identities=21% Similarity=0.198 Sum_probs=67.8
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
...+|||+|||+.+++++|+.+|++||.|.+|+|... .++|||||+|.+.++|..|+.
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k---------------------~~rgfAFVeF~d~~~A~~Ai~~ 103 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---------------------NNQFQALLQYADPVSAQHAKLS 103 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES---------------------SSCEEEEEEESCHHHHHHHHHH
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---------------------CCCCEEEEEECCHHHHHHHHHH
Confidence 3567999999999999999999999999999988421 134899999999999999996
Q ss_pred ccceEEcc--eeeccccCCCcc
Q 015686 303 FNMAVIGG--NHIRLDRACPPR 322 (402)
Q Consensus 303 lng~~l~G--r~I~V~~a~~~~ 322 (402)
|||..|.| +.|+|.++.++.
T Consensus 104 LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 104 LDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp STTBCSSSSCSCEEEEECSSSS
T ss_pred hCCCEecCCCcEEEEEEecCCc
Confidence 99999965 999999997653
No 227
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.41 E-value=2.3e-13 Score=104.49 Aligned_cols=60 Identities=17% Similarity=0.352 Sum_probs=57.3
Q ss_pred eeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 338 tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
+|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.++|.+||++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 60 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQF----GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 60 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTT----SCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSS
T ss_pred CEEEecCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHC
Confidence 59999999999999999999999 9999999999988999999999999999999999863
No 228
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.41 E-value=2.6e-13 Score=125.06 Aligned_cols=78 Identities=21% Similarity=0.354 Sum_probs=69.6
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
.++|||+|||+.+++++|+.+|+.||.|..|+|+++. .. ++|||||+|.+.++|..||. |
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~----~~---------------~~g~~fV~f~~~~~a~~Ai~~l 163 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE----NG---------------SKGYGFVHFETQEAAERAIEKM 163 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET----TE---------------EEEEEEEEESSHHHHHHHHHHH
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC----CC---------------CceEEEEEeCCHHHHHHHHHHh
Confidence 4679999999999999999999999999999996532 11 45899999999999999995 9
Q ss_pred cceEEcceeeccccCCCc
Q 015686 304 NMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~ 321 (402)
||..|.|+.|.|.++.++
T Consensus 164 ng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 164 NGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp TTCEETTEECEEEECCCH
T ss_pred CCCEECCEEEEEEEcCCC
Confidence 999999999999998764
No 229
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.41 E-value=6.9e-13 Score=108.30 Aligned_cols=63 Identities=30% Similarity=0.438 Sum_probs=59.6
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHH
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~ 400 (402)
..+.++|||+|||+.+++++|+++|..| | |..|+|++++.+|.++|||||+|.+.++|..||.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 74 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDL----S-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALT 74 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTS----C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGG
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhC----C-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHh
Confidence 4567999999999999999999999999 7 9999999999999999999999999999999994
No 230
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.41 E-value=4.6e-13 Score=107.35 Aligned_cols=64 Identities=27% Similarity=0.424 Sum_probs=59.9
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+.++|||+|||+.+++++|+++|..| |.|..|+|++++. |.++|||||+|.+.++|..||+.
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~----G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~ 76 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQA----GPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIAL 76 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGG----SCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH
Confidence 4467899999999999999999999999 9999999999976 99999999999999999999974
No 231
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.40 E-value=3.6e-13 Score=112.68 Aligned_cols=61 Identities=18% Similarity=0.357 Sum_probs=56.2
Q ss_pred cceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+|||+|||+.+++++|+++|+.| |.|..|+|++|. +.++|||||+|.+.++|..||+.|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~----G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l 65 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAF----GNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 65 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHhcc----CCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHc
Confidence 5689999999999999999999999 999999999985 458999999999999999999753
No 232
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.40 E-value=6.5e-13 Score=114.39 Aligned_cols=76 Identities=21% Similarity=0.204 Sum_probs=66.9
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcce-EEEEEeechhHHHHHh-
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH-AYIVFKSEQSTEAALA- 302 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~-aFV~F~s~e~A~~Al~- 302 (402)
-..|||+||++.+|+++|+.+|++||.|.+|+|... ++|| |||+|.+.++|..|+.
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----------------------~~gfqAFVef~~~~~A~~Ai~~ 85 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----------------------NNQFQALLQYADPVSAQHAKLS 85 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----------------------TTEEEEEEEESCHHHHHHHHHH
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----------------------CCCcEEEEEECCHHHHHHHHHH
Confidence 466899999999999999999999999999988431 2366 9999999999999996
Q ss_pred ccceEEcc--eeeccccCCCcc
Q 015686 303 FNMAVIGG--NHIRLDRACPPR 322 (402)
Q Consensus 303 lng~~l~G--r~I~V~~a~~~~ 322 (402)
|||..|.| +.|+|.++.+..
T Consensus 86 LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 86 LDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp HTTCEEETTEEEEEEEECSCSS
T ss_pred cCCCeecCCCcEEEEEecCCCc
Confidence 99999988 999999997653
No 233
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=6e-13 Score=109.28 Aligned_cols=64 Identities=25% Similarity=0.249 Sum_probs=59.2
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEE-EEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA-VRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~-vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
....++|||+|||+.+++++|+++|..| |.|.. |+|+++ .+|+++|||||+|.++++|..||.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~ 76 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGL----EIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK 76 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTC----CEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh
Confidence 4567899999999999999999999999 89987 899998 7899999999999999999999964
No 234
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.40 E-value=4.8e-13 Score=110.39 Aligned_cols=65 Identities=17% Similarity=0.288 Sum_probs=61.3
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+.++|||+|||..+++++|+.+|+.| |.|..|.|+.++.+|.++|||||+|.+.++|..||..
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 87 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDY----GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 87 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGG----SCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 3467899999999999999999999999 9999999999999999999999999999999999974
No 235
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.40 E-value=5.2e-13 Score=111.56 Aligned_cols=66 Identities=15% Similarity=0.206 Sum_probs=62.1
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.++|..||+.|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 102 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPF----GNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 102 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTS----CEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHc
Confidence 4567999999999999999999999999 99999999999889999999999999999999999854
No 236
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.40 E-value=6.6e-13 Score=108.88 Aligned_cols=65 Identities=22% Similarity=0.266 Sum_probs=60.9
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+++|..| |.|..|.|++++ +|.++|||||+|.+.++|..||+.|
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l 90 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEF----GTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQY 90 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHh
Confidence 4567999999999999999999999999 999999999997 8999999999999999999999853
No 237
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.40 E-value=8e-13 Score=118.75 Aligned_cols=82 Identities=18% Similarity=0.306 Sum_probs=71.7
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..++|||+|||+++++++|+.+|+.||.|..|++...+. + +.++|||||+|.+.++|..|+.
T Consensus 113 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~--~---------------~~~~g~afV~f~~~~~a~~A~~~ 175 (198)
T 2yh0_A 113 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA--T---------------GLSKGYAFCEYVDINVTDQAIAG 175 (198)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTT--T---------------CSEEEEEEEEESSSSHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCC--C---------------CCcceEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999865321 1 2356999999999999999996
Q ss_pred ccceEEcceeeccccCCCcc
Q 015686 303 FNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~ 322 (402)
|||..|.|+.|.|.++.++.
T Consensus 176 l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 176 LNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp HTTCEETTEECEEEESCCCC
T ss_pred cCCCEECCEEEEEEECCCCC
Confidence 99999999999999987653
No 238
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.40 E-value=5.2e-13 Score=117.34 Aligned_cols=78 Identities=19% Similarity=0.347 Sum_probs=68.9
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
.++|||+|||+++++++|+.+|++||.|..++++..+. + +.++|||||+|.+.++|..|+. |
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~---------------g~~~g~afV~f~~~~~A~~A~~~l 156 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA--T---------------GLSKGYAFCEYVDINVTDQAIAGL 156 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTT--T---------------CSEEEEEEEEESSTTHHHHHHHHH
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCC--C---------------CCcceEEEEEeCCHHHHHHHHHHc
Confidence 58899999999999999999999999999999865321 1 2356999999999999999996 9
Q ss_pred cceEEcceeeccccCC
Q 015686 304 NMAVIGGNHIRLDRAC 319 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~ 319 (402)
||..|.|+.|.|.+|.
T Consensus 157 ~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 157 NGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTCEETTEECEEEECC
T ss_pred CCCEECCeEEEEEeCC
Confidence 9999999999998863
No 239
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.39 E-value=1.9e-13 Score=116.85 Aligned_cols=65 Identities=18% Similarity=0.297 Sum_probs=60.2
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEE--EEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA--VRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~--vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+++|..| |.|.. |+|++|+.+|.++|||||+|.+. +|..||..|
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~----G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l 86 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPY----AVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQIL 86 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGG----CCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh----CCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHh
Confidence 3467899999999999999999999999 99977 99999998999999999999999 999998754
No 240
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=7e-13 Score=108.42 Aligned_cols=62 Identities=35% Similarity=0.543 Sum_probs=58.8
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCC-CCCceEEEEEecCHHHHHHHH
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM-RVGKGIAYVLFKTRLPIWLLR 399 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~-g~skG~aFV~F~s~e~A~~Al 399 (402)
..+.++|||+|||+.+++++|+.+|..| | |..|+|++++.+ |.++|||||+|.+.++|.+||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~ 74 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGL----N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL 74 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTS----C-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHC----C-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH
Confidence 3467999999999999999999999999 9 999999999887 999999999999999999999
No 241
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.39 E-value=4.6e-13 Score=104.68 Aligned_cols=60 Identities=12% Similarity=0.074 Sum_probs=55.4
Q ss_pred ceeEecCCCCCC------CHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 337 KTVFVGNLPFDV------KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 337 ~tLfV~NLp~~~------teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
++|||+|||+.+ ++++|+++|+.| |.|..|+|+ +.+|.++|||||+|.+.++|..||+.|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~----G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~l 67 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKF----GKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNA 67 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTT----CCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhc----CCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHh
Confidence 689999999999 679999999999 999999987 367899999999999999999999864
No 242
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=4.3e-13 Score=111.94 Aligned_cols=79 Identities=22% Similarity=0.294 Sum_probs=61.0
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|++||.|. +.++.... +. ..++++|||||+|.+.++|+.||.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~--~~------------~~g~~~G~aFV~f~~~~~a~~Ai~ 70 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAE--SK------------SYFPPKGYAFLLFQEESSVQALID 70 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSS--SC------------CCSCTTSEEEECCSSHHHHHHHHH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCC--CC------------CCCCcccEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999999998 66633211 10 013467999999999999999996
Q ss_pred -ccceEEcceeeccccC
Q 015686 303 -FNMAVIGGNHIRLDRA 318 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a 318 (402)
|+ .++|+.|.+..+
T Consensus 71 ~~~--~~~G~~~~~~~~ 85 (114)
T 2dnl_A 71 ACL--EEDGKLYLCVSS 85 (114)
T ss_dssp HSE--EETTEEEEEECC
T ss_pred hhh--hcCCcEEEeccC
Confidence 63 377777776544
No 243
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.39 E-value=7.9e-13 Score=113.26 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=61.7
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+.++|||+|||+.+++++|+++|..| |.|..|+|++++.+|.++|||||+|.+.++|.+||+.
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ 107 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKY----GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 107 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTT----SCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 4567899999999999999999999999 9999999999999999999999999999999999974
No 244
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.39 E-value=9.2e-13 Score=112.58 Aligned_cols=75 Identities=20% Similarity=0.198 Sum_probs=65.0
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcce-EEEEEeechhHHHHHh-
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH-AYIVFKSEQSTEAALA- 302 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~-aFV~F~s~e~A~~Al~- 302 (402)
...|||+|||+.+++++|+.+|++||.|..|+|.. . .|| |||+|.+.++|..|+.
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~----~-------------------~Gf~aFVef~~~~~A~~A~~~ 81 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK----R-------------------NGIQAMVEFESVLCAQKAKAA 81 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE----S-------------------SSEEEEEEESSHHHHHHHHHH
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe----C-------------------CCCEEEEEECCHHHHHHHHHH
Confidence 34578999999999999999999999999998832 0 166 9999999999999996
Q ss_pred ccceEEcc--eeeccccCCCcc
Q 015686 303 FNMAVIGG--NHIRLDRACPPR 322 (402)
Q Consensus 303 lng~~l~G--r~I~V~~a~~~~ 322 (402)
|||..|.| +.|+|.++.++.
T Consensus 82 LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 82 LNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp HTTCCCBTTBSEEEEECCSCSC
T ss_pred hCCCEecCCCeEEEEEEecCCc
Confidence 99999987 689999987653
No 245
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.39 E-value=1.9e-13 Score=104.83 Aligned_cols=60 Identities=25% Similarity=0.499 Sum_probs=57.7
Q ss_pred eeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 338 tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
+|||+|||+.+++++|+++|+.| |.|..|.|++++.+|.++|||||+|.+.++|..||++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGF----GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHH----SCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT
T ss_pred CEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh
Confidence 59999999999999999999999 9999999999999999999999999999999999975
No 246
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=5.4e-13 Score=109.76 Aligned_cols=65 Identities=22% Similarity=0.283 Sum_probs=60.5
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCC-eEEEEEe-ecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESS-VEAVRVI-RHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~-I~~vrI~-~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.+.++|||+|||+.+++++|+++|..| |. |..|.|+ .+..+|.++|||||+|.++++|..||+.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 72 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKV----TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKL 72 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHH----STTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTT
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHh----cCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHh
Confidence 357899999999999999999999999 88 9999998 78888999999999999999999999864
No 247
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=6.3e-13 Score=109.22 Aligned_cols=63 Identities=22% Similarity=0.246 Sum_probs=57.5
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
....++|||+|||+.+++++|+++|..| |. ..|+|++|+ +|+++|||||+|.+.++|.+||.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~ 74 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPL----NP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAK 74 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSC----CC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHc----Cc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh
Confidence 3456899999999999999999999999 84 499999997 899999999999999999999953
No 248
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.38 E-value=8.4e-13 Score=110.80 Aligned_cols=64 Identities=16% Similarity=0.283 Sum_probs=60.2
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
...++|||+|||+.+++++|+++|+.| |.|..|.|+.+. +|.++|||||+|.+.++|..||+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l 68 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKH----GPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTS----SCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHh
Confidence 456899999999999999999999999 999999999997 8999999999999999999999864
No 249
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.1e-12 Score=107.06 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=59.2
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+.++|||+|||+.+++++|+++|..| |.|..|.|+++ +|.++|||||+|.+.++|..||..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~ 74 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPF----GTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTE 74 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTT----SCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHH
Confidence 4467899999999999999999999999 99999999998 789999999999999999999975
No 250
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=5e-13 Score=111.56 Aligned_cols=64 Identities=28% Similarity=0.405 Sum_probs=58.9
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCC---CCCceEEEEEecCHHHHHHHHHhC
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM---RVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~---g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
...++|||+|||+.+++++|+++|..| |.|. +.++.+..+ |.++|||||+|.+.++|..||+.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~----G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRF----GPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTT----CCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhc----CCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 356899999999999999999999999 9999 888888776 799999999999999999999865
No 251
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=3.7e-13 Score=109.28 Aligned_cols=71 Identities=25% Similarity=0.275 Sum_probs=61.9
Q ss_pred ccE-EEEeCCCCcCcHHH----HHHHhhhc-CCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHH
Q 015686 225 LRT-IFVGNLPLKVKKKT----LIKEFIKF-GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (402)
Q Consensus 225 ~~t-VfVgNLP~~vtee~----L~~~F~~~-G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~ 298 (402)
+.| |||+|||+.+++++ |+.+|++| |.|.+|. .|+|||.|.+.++|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt---------------------------gG~AfV~F~~~esA~ 60 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT---------------------------GCSAILRFINQDSAE 60 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC---------------------------TTCEEEEESSHHHHH
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe---------------------------cCEEEEEECCHHHHH
Confidence 455 99999999999888 55899999 5997661 179999999999999
Q ss_pred HHHh-ccceEEcceeeccccCCCcc
Q 015686 299 AALA-FNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 299 ~Al~-lng~~l~Gr~I~V~~a~~~~ 322 (402)
.|++ |||..|.||.|+|.++....
T Consensus 61 ~A~~~l~G~~l~gr~i~v~~A~~~s 85 (96)
T 2diu_A 61 RAQKRMENEDVFGNRIIVSFTPKNR 85 (96)
T ss_dssp HHHHHHTTCCSSSSCCEEESSCCSC
T ss_pred HHHHHhcCCccCCceEEEEecCCCc
Confidence 9995 99999999999999997543
No 252
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.38 E-value=2.8e-13 Score=108.65 Aligned_cols=65 Identities=22% Similarity=0.228 Sum_probs=59.2
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
.++.++|||+|||+.+++++|+++|..| |.|..+.++.++.+|.++|||||+|.++++|.+||+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 76 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGY----QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 76 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTS----CBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHH
Confidence 3456899999999999999999999999 9999899999989999999999999999999999974
No 253
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.6e-12 Score=107.88 Aligned_cols=65 Identities=12% Similarity=0.298 Sum_probs=60.5
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+.+|..| |.|..|+|++++ +|.++|||||+|.+.++|..||..|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l 86 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPF----GQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHF 86 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTT----SCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHh
Confidence 3457899999999999999999999999 999999999997 8999999999999999999999743
No 254
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=5.2e-13 Score=107.79 Aligned_cols=66 Identities=21% Similarity=0.215 Sum_probs=61.0
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
....++|||+|||+.+++++|+++|..| |.|..+.++.++.+|.++|||||+|.+.++|.+||+.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~----G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 77 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGY----QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 77 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTS----CCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHc----CCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 4457899999999999999999999999 89998889999899999999999999999999999754
No 255
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.38 E-value=1.3e-12 Score=111.86 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=62.3
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+++|..| |.|..|+|++++.+|.++|||||+|.++++|.+||+.|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 125 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPF----GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 125 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGG----SCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHS
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhc----CCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHh
Confidence 4568999999999999999999999999 99999999999999999999999999999999999754
No 256
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=6.1e-13 Score=110.31 Aligned_cols=66 Identities=14% Similarity=0.095 Sum_probs=61.2
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeE--------EEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE--------AVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~--------~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+++|..| |.|. .|+|++++.+|.++|||||+|.+.++|..||+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 85 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQC----GVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWF 85 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTT----SCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhc----CCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHc
Confidence 3467899999999999999999999999 8998 6999999999999999999999999999999753
No 257
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=3.9e-13 Score=112.23 Aligned_cols=64 Identities=23% Similarity=0.322 Sum_probs=59.5
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCe-EEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSV-EAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I-~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+.++|||+|||+.+++++|+++|..| |.| ..|+|++|+ +|.++|||||+|.+.++|..||++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~ 76 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGI----PVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL 76 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTS----CCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhC----CCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh
Confidence 3457899999999999999999999999 899 889999997 899999999999999999999864
No 258
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=8e-13 Score=110.22 Aligned_cols=64 Identities=17% Similarity=0.398 Sum_probs=60.4
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
.+.++|||+|||+.+++++|+++|..| |.|..|+|++++.+|.++|||||+|.+.++|..||.+
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQW----GKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSS----CCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh
Confidence 346899999999999999999999999 9999999999999999999999999999999999964
No 259
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.37 E-value=4.1e-13 Score=113.86 Aligned_cols=74 Identities=18% Similarity=0.283 Sum_probs=66.1
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|| ++++++|+.+|+.||.|..|.|. .++|||||+|.+.++|..||.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----------------------~~kg~aFV~f~~~~~A~~Ai~ 91 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----------------------PPRNCAFVTYEKMESADQAVA 91 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----------------------TTTTEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----------------------CCCCEEEEEECCHHHHHHHHH
Confidence 34789999996 79999999999999999999883 145899999999999999995
Q ss_pred -ccceEEcceeeccccCCCc
Q 015686 303 -FNMAVIGGNHIRLDRACPP 321 (402)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~ 321 (402)
|||..|.|+.|.|.++.++
T Consensus 92 ~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 92 ELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp HHTTCBCSSCBCEEEECCSS
T ss_pred HhCCCEECCeEEEEEEeCCC
Confidence 9999999999999998754
No 260
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.37 E-value=9.1e-13 Score=113.21 Aligned_cols=66 Identities=20% Similarity=0.343 Sum_probs=62.1
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
....++|||+|||..+++++|+.+|+.| |.|..|+|++++.+|.++|||||+|.+.++|.+||+.|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 104 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERY----GPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGL 104 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHH----SCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 4457899999999999999999999999 99999999999999999999999999999999999864
No 261
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.37 E-value=7.3e-13 Score=120.65 Aligned_cols=81 Identities=23% Similarity=0.463 Sum_probs=71.5
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
.++|||+|||+++++++|+.+|+.||.|..|+|+..+. + +.++|||||+|.+.++|..|+. |
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~---------------g~~~g~afV~F~~~~~A~~A~~~l 187 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPT--T---------------GKHKGYGFIEYEKAQSSQDAVSSM 187 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTT--T---------------CCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCC--C---------------CCcCceEEEEecCHHHHHHHHHHc
Confidence 58899999999999999999999999999999965431 1 2356999999999999999996 9
Q ss_pred cceEEcceeeccccCCCcc
Q 015686 304 NMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~ 322 (402)
||..|.|+.|.|.++.++.
T Consensus 188 ~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 188 NLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp TTCBCSSSBCEEEECSSCS
T ss_pred cCCEeCCcEEEEEEecCCC
Confidence 9999999999999987653
No 262
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.37 E-value=6.7e-13 Score=113.77 Aligned_cols=77 Identities=17% Similarity=0.102 Sum_probs=64.8
Q ss_pred cEEEEeCC----CCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEee----chh-
Q 015686 226 RTIFVGNL----PLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKS----EQS- 296 (402)
Q Consensus 226 ~tVfVgNL----P~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s----~e~- 296 (402)
..|||+|| |+.+++.+|+.+|+.||.|.++.++.+|. + ++++|||||.|.+ ++.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~--T---------------g~slGfgfVef~d~~g~~d~a 65 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPN--S---------------ALPLHVYLIKYASSDGKINDA 65 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTT--T---------------CCEEEEEEEECC------CCH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--C---------------CceeeEEEEEECCCCCCcchH
Confidence 57999999 99999999999999999999999988764 2 3356999999996 433
Q ss_pred ---HHHHHh---ccceEEcceeeccccCC
Q 015686 297 ---TEAALA---FNMAVIGGNHIRLDRAC 319 (402)
Q Consensus 297 ---A~~Al~---lng~~l~Gr~I~V~~a~ 319 (402)
|..|+. +||..|.|+.|+|.+-.
T Consensus 66 ~kAA~kAi~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 66 AKAAFSAVRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp HHHHHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred HHHHHHHHHHhhhcCCeecCcEEEEEECc
Confidence 677764 79999999999998764
No 263
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.37 E-value=1.6e-12 Score=109.82 Aligned_cols=65 Identities=23% Similarity=0.259 Sum_probs=60.9
Q ss_pred ccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 332 ~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
.....++|||+|||+.+++++|+.+|+.| |.|..|+|++++ +|.++|||||+|.+.++|..||+.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~ 95 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEF----GTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQ 95 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTT----SCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHH
Confidence 35667999999999999999999999999 999999999997 899999999999999999999974
No 264
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.37 E-value=1.7e-12 Score=103.41 Aligned_cols=63 Identities=21% Similarity=0.134 Sum_probs=58.4
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+.++|||+|||+.+++++|+++|..| |.|..|+|+++ +|.++|||||+|.+.++|..||+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~ 67 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNEC----GHVLYADIKME--NGKSKGCGVVKFESPEVAERACRM 67 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTT----SCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHH
Confidence 3467899999999999999999999999 99999999984 688999999999999999999975
No 265
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.37 E-value=8.3e-13 Score=111.58 Aligned_cols=66 Identities=14% Similarity=0.094 Sum_probs=61.6
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+.+|..| |.|..|.|+.++.+|.++|||||+|.+.++|..||+.|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 84 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEY----GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 84 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 3457899999999999999999999999 99999999999889999999999999999999999753
No 266
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.37 E-value=2.5e-13 Score=118.25 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=56.3
Q ss_pred ceEEEEEeechhHHHHHhccceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCC
Q 015686 285 VHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLE 364 (402)
Q Consensus 285 G~aFV~F~s~e~A~~Al~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~ 364 (402)
|+||..|..++.+..++..-..++.|....-..... .........++|||+|||+.+++++|+++|+.|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~g~~-------~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~---- 70 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSGDS-------EFTVQSTTGHCVHMRGLPYKATENDIYNFFSPL---- 70 (139)
T ss_dssp --------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSC----
T ss_pred CcccccccCccccchhcccchhccCCCCCCCCCCCc-------ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhc----
Confidence 688888888877666653111122232221111000 001123456899999999999999999999999
Q ss_pred CCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHH
Q 015686 365 SSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 365 G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~ 400 (402)
| |..|+|++|+. |+++|||||+|.+.++|..||.
T Consensus 71 G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~ 104 (139)
T 2hgn_A 71 N-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMS 104 (139)
T ss_dssp C-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTT
T ss_pred C-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHh
Confidence 8 67999999976 9999999999999999999984
No 267
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2e-12 Score=107.21 Aligned_cols=64 Identities=20% Similarity=0.271 Sum_probs=59.7
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+.++|||+|||+.+++++|+++|..| |.|..|+|++++ +|.++|||||+|.+.++|..||+.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~----G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~ 75 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMA----GVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISM 75 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHH
Confidence 4467899999999999999999999999 999999999996 599999999999999999999974
No 268
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=6.7e-13 Score=110.34 Aligned_cols=62 Identities=29% Similarity=0.410 Sum_probs=59.2
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHH
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~ 400 (402)
..++|||+|||+.+++++|+++|..| |.|..|+|++++.+|.++|||||+|.+.++|..||.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 85 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAV----GKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG 85 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC----CCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHH
Confidence 46899999999999999999999999 999999999999999999999999999999999993
No 269
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.36 E-value=2.1e-12 Score=113.32 Aligned_cols=66 Identities=21% Similarity=0.320 Sum_probs=62.1
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+.+|+.| |.|..|.|++++.++.++|||||+|.++++|..||+.|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l 101 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKS----GDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 3467899999999999999999999999 99999999999999999999999999999999999864
No 270
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.36 E-value=6.5e-13 Score=104.70 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=58.5
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCC-CceEEEEEecCHHHHHHHHHh
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV-GKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~-skG~aFV~F~s~e~A~~Al~~ 401 (402)
..++|||+|||..+++++|+++|+.| |.|..|.|++++.++. ++|||||+|.+.++|..|+..
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 66 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTY----GKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH 66 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHH
Confidence 35789999999999999999999999 9999999999987666 899999999999999999975
No 271
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.36 E-value=7.1e-13 Score=107.95 Aligned_cols=63 Identities=35% Similarity=0.544 Sum_probs=56.8
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecC-CCCCCceEEEEEecCHHHHHHHHH
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHP-HMRVGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~-~~g~skG~aFV~F~s~e~A~~Al~ 400 (402)
....++|||+|||+.+++++|+++|+.| | |..|+|++++ .+|.++|||||+|.+.++|..||.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~ 79 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGL----N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALS 79 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSS----C-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----C-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHh
Confidence 4457999999999999999999999999 9 9999999998 589999999999999999999993
No 272
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.4e-12 Score=110.75 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=56.5
Q ss_pred CCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 330 APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 330 ~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
.....+.++|||+|||+.+++++|+++|++| |.|..|+|+++ +|||||+|.+.++|..||+.
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~f----G~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~ 86 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPF----GKVTNLLMLKG------KNQAFIEMNTEEAANTMVNY 86 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTT----SCCCEEEEEGG------GTEEEEECSCHHHHHHHHHH
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEeCC------CCEEEEEECCHHHHHHHHHH
Confidence 3445678999999999999999999999999 99999999875 79999999999999999974
No 273
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.35 E-value=9.8e-13 Score=110.70 Aligned_cols=63 Identities=17% Similarity=0.188 Sum_probs=58.6
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCC---eEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESS---VEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~---I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
...++|||+|||+.+++++|+++|..| |. |..|+|++++. |+++|||||+|.+.++|.+||++
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~ 80 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDC----TIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKK 80 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTS----CBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGG
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHc----CCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhc
Confidence 456899999999999999999999999 77 89999999976 99999999999999999999973
No 274
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.35 E-value=4.1e-13 Score=106.71 Aligned_cols=61 Identities=21% Similarity=0.387 Sum_probs=58.2
Q ss_pred ceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
++|||+|||..+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.+ |..|+..|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l 62 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQF----GKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKL 62 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHH----TCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhc----CCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHh
Confidence 689999999999999999999999 99999999999999999999999999999 99999764
No 275
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=2.7e-12 Score=102.26 Aligned_cols=62 Identities=19% Similarity=0.293 Sum_probs=57.7
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHH
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~ 400 (402)
....++|||+|||+.+++++|+++|..| .|..|+|+++ .+|.++|||||+|.+.++|..||.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-----~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~ 68 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-----KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK 68 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-----CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-----CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH
Confidence 3457899999999999999999999998 4889999999 789999999999999999999997
No 276
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.1e-12 Score=108.96 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=54.1
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
.+.++|||+|||+.+++++|+++|++| |.|..|+|+++ +|||||+|.+.++|..||+.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~f----G~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~ 71 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPF----GKVTNLLMLKG------KNQAFIEMNTEEAANTMVNY 71 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHH----CCEEEEEEETT------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEcC------CCEEEEEECCHHHHHHHHHH
Confidence 457899999999999999999999999 99999999875 79999999999999999973
No 277
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.35 E-value=1.1e-12 Score=113.64 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=58.9
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCC---eEEEEEeecCCCCCCceEEEEEecCHHHHHHHHH
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESS---VEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~---I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~ 400 (402)
....++|||+|||+.+|+++|+++|+.| |. |..|+|++|+. |+++|||||+|.+.++|.+||+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~----G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~ 106 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDC----TIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK 106 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTC----CCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh----CCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh
Confidence 3456899999999999999999999999 88 89999999977 9999999999999999999997
No 278
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=1.2e-12 Score=109.13 Aligned_cols=62 Identities=21% Similarity=0.311 Sum_probs=56.9
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
....+|||+|||+.+++++|+++|+.| .|..|+|++|+. |+++|||||+|.++++|.+||.+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-----~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~ 75 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-----RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKR 75 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-----CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-----CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhc
Confidence 345799999999999999999999998 588999999976 99999999999999999999964
No 279
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.34 E-value=1.8e-12 Score=106.76 Aligned_cols=60 Identities=17% Similarity=0.108 Sum_probs=55.2
Q ss_pred ccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 332 ~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
...++++|||+|||+.+++++|+++|++| |.|..|++++ +||||||+|.+.++|..|++.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~f----G~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ 76 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEF----GPISYVVVMP------KKRQALVEFEDVLGACNAVNY 76 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEET------TTTEEEEEESSHHHHHHHHHH
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhcc----CCEEEEEEEc------CCCEEEEEECCHHHHHHHHHH
Confidence 35678999999999999999999999999 9999999985 479999999999999999975
No 280
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=9.8e-13 Score=112.17 Aligned_cols=67 Identities=19% Similarity=0.175 Sum_probs=57.7
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
....+|||+|||+.+++++|+++|+.|+.+.|.|..|+|+++ .+|+++|||||+|.+.++|.+||++
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh
Confidence 346899999999999999999999999322223579999999 5899999999999999999999964
No 281
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=3.5e-12 Score=103.91 Aligned_cols=63 Identities=24% Similarity=0.408 Sum_probs=57.8
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+.++|||+|||+.+++++|+++|..| |.|..|+|++++. .++|||||+|.+.++|..||..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~ 74 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQF----GKILDVEIIFNER--GSKGFGFVTFENSADADRAREK 74 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGT----SCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHH
Confidence 4567999999999999999999999999 9999999999854 3899999999999999999975
No 282
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.34 E-value=3e-12 Score=106.01 Aligned_cols=81 Identities=16% Similarity=0.229 Sum_probs=67.1
Q ss_pred cccEEEEeCCCC-----cCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHH
Q 015686 224 LLRTIFVGNLPL-----KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (402)
Q Consensus 224 ~~~tVfVgNLP~-----~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~ 298 (402)
.+++|+|+||.. +-++++|+.+|++||.|.+|.|++.+. . .+.++|||||.|.+.++|.
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~--~--------------~~~~~G~~FV~f~~~~~A~ 70 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPG--A--------------PDDEAVRIFLEFERVESAI 70 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSS--C--------------CTTTSEEEEEEESSHHHHH
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCC--C--------------CCCCcEEEEEEECCHHHHH
Confidence 478999999962 237899999999999999999965431 1 0235799999999999999
Q ss_pred HHHh-ccceEEcceeeccccCCC
Q 015686 299 AALA-FNMAVIGGNHIRLDRACP 320 (402)
Q Consensus 299 ~Al~-lng~~l~Gr~I~V~~a~~ 320 (402)
.|+. |||..|.||.|.|.++..
T Consensus 71 ~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 71 KAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp HHHHHHTTCEETTEECEEEECCH
T ss_pred HHHHHHCCCEECCcEEEEEEcCH
Confidence 9995 999999999999999853
No 283
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.34 E-value=9.4e-13 Score=108.65 Aligned_cols=63 Identities=11% Similarity=0.164 Sum_probs=58.5
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCC---eEEEEEeecCCCCCCceEEEEEecCHHHHHHHHH
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESS---VEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~---I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~ 400 (402)
....++|||+|||+.+++++|+++|..| |. |..|+|++++. |+++|||||+|.+.++|..||.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~ 73 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDC----RIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE 73 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTS----CBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhc----CCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH
Confidence 3457899999999999999999999998 66 89999999977 9999999999999999999997
No 284
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=2.4e-12 Score=104.89 Aligned_cols=63 Identities=22% Similarity=0.293 Sum_probs=57.6
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+.++|||+|||+.+++++|+.+|+.| |.|..|+|++++. .++|||||+|.+.++|..||+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~ 74 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQI----GPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAA 74 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHH----SCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhc----CCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHH
Confidence 4567999999999999999999999999 9999999999854 3699999999999999999974
No 285
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.33 E-value=2.1e-12 Score=108.77 Aligned_cols=62 Identities=21% Similarity=0.362 Sum_probs=59.3
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHH
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~ 400 (402)
..++|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.++|..||.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 96 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSC----GSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVA 96 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTT----SCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHh
Confidence 46899999999999999999999999 999999999998899999999999999999999994
No 286
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.33 E-value=1.9e-12 Score=110.86 Aligned_cols=62 Identities=26% Similarity=0.303 Sum_probs=57.0
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeE--EEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE--AVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~--~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
...++|||+|||+.+++++|+++|+.| + |. .|+|++|+. |+++|||||+|.+.++|.+||++
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~----~-i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~ 103 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL----E-IVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK 103 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS----C-EEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC----C-ceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH
Confidence 456899999999999999999999999 4 55 899999977 99999999999999999999975
No 287
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.33 E-value=1.1e-12 Score=124.05 Aligned_cols=75 Identities=20% Similarity=0.331 Sum_probs=67.5
Q ss_pred CcccEEEEeCCCCcC---------cHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEee
Q 015686 223 KLLRTIFVGNLPLKV---------KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKS 293 (402)
Q Consensus 223 ~~~~tVfVgNLP~~v---------tee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s 293 (402)
...++|||||||+.+ ++++|+.+|++||.|.+|+|+. ++|||||.|.+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----------------------~kG~AFV~F~~ 188 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----------------------SKNCGFVKFKY 188 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----------------------GGTEEEEEESS
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----------------------CCCEEEEEeCC
Confidence 347999999999998 8999999999999999999842 35899999999
Q ss_pred chhHHHHHh-ccceEE------------cceeeccccCCC
Q 015686 294 EQSTEAALA-FNMAVI------------GGNHIRLDRACP 320 (402)
Q Consensus 294 ~e~A~~Al~-lng~~l------------~Gr~I~V~~a~~ 320 (402)
.++|+.|+. |+|..| .|+.|.|.++..
T Consensus 189 ~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 189 QANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp HHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred HHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccC
Confidence 999999995 999999 899999999864
No 288
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=2.8e-12 Score=105.58 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=54.6
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+.++|||+|||+.+++++|+.+|+.| |.|..|+|+++ +|||||+|.+.++|..||+.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~f----G~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~ 70 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPF----GKVTNILMLKG------KNQAFLELATEEAAITMVNY 70 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTT----SCEEEEEEETT------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEECC------CCEEEEEECCHHHHHHHHHH
Confidence 4577999999999999999999999999 99999998864 89999999999999999974
No 289
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.32 E-value=2.7e-12 Score=113.39 Aligned_cols=75 Identities=29% Similarity=0.305 Sum_probs=65.2
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..++|||+|||+++++++|+.+|+.||.|..+ ... +.++|||||+|.+.++|..|+.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-------~~~---------------~~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-------SQD---------------GKSKGIAYIEFKSEADAEKNLEE 155 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-------CSS---------------SSCCSEEEEECSSHHHHHHHHHH
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-------cCC---------------CCCceEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999977544 111 2356999999999999999996
Q ss_pred ccceEEcceeeccccCCC
Q 015686 303 FNMAVIGGNHIRLDRACP 320 (402)
Q Consensus 303 lng~~l~Gr~I~V~~a~~ 320 (402)
|||..|.|+.|.|.++.+
T Consensus 156 l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 156 KQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp HTEEEETTEEEEEEECSS
T ss_pred hCCCEECCeEEEEEecCC
Confidence 999999999999999864
No 290
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.32 E-value=2.5e-12 Score=112.32 Aligned_cols=78 Identities=21% Similarity=0.315 Sum_probs=67.5
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
..++|||+|||+.+++++|+.+|+.||.|..++++..+. . +.++|||||+|.+.++|..|+.
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~--~---------------~~~~g~afV~f~~~~~A~~A~~~ 150 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL--T---------------GRPRGVAFVRYNKREEAQEAISA 150 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTT--T---------------CCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCC--C---------------CCcceEEEEEECCHHHHHHHHHH
Confidence 368899999999999999999999999999999865321 1 2356999999999999999996
Q ss_pred ccceEEcc--eeeccccC
Q 015686 303 FNMAVIGG--NHIRLDRA 318 (402)
Q Consensus 303 lng~~l~G--r~I~V~~a 318 (402)
|||..|.| +.|.|.+|
T Consensus 151 l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 151 LNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HTTCCCTTCSSCCEEEEC
T ss_pred hcCCEecCCCeEEEEEeC
Confidence 99999988 89988764
No 291
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.32 E-value=1.8e-12 Score=121.64 Aligned_cols=64 Identities=19% Similarity=0.282 Sum_probs=59.7
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCC--CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLES--SVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G--~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..++|||+|||+.+++++|+++|..| | .|..|+|++|+.+|+++|||||+|.+.++|.+||+.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~----G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~l 132 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSL----GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLL 132 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTT----TCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHH----CCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHc
Confidence 35789999999999999999999999 9 8999999999999999999999999999999999854
No 292
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.32 E-value=1e-12 Score=106.99 Aligned_cols=62 Identities=27% Similarity=0.480 Sum_probs=58.7
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHH
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~ 400 (402)
...++|||+|||+.+++++|+.+|..| |.|..|+|++++ +|.++|||||+|.+.++|..||.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARY----GSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGG----SCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh
Confidence 356899999999999999999999999 999999999997 89999999999999999999986
No 293
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1.6e-12 Score=110.05 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=58.3
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHH
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~ 400 (402)
....++|||+|||+.+++++|+.+|..| |.|..+.++.+..+|.++|||||+|.+.++|..||.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~ 85 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKL----DIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC 85 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSS----CBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----CCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH
Confidence 4456899999999999999999999999 899886677777889999999999999999999997
No 294
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=4e-12 Score=105.12 Aligned_cols=59 Identities=15% Similarity=0.086 Sum_probs=54.4
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+.++|||+|||+.+++++|+++|++| |.|..|.|+++ +|||||+|.+.++|..||+.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~f----G~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~ 70 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKF----GTICYVMMMPF------KRQALVEFENIDSAKECVTF 70 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTT----SCEEEEEEETT------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEECC------CCEEEEEECCHHHHHHHHHH
Confidence 4578999999999999999999999999 99999998763 79999999999999999974
No 295
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=3.1e-12 Score=103.38 Aligned_cols=63 Identities=16% Similarity=0.128 Sum_probs=57.5
Q ss_pred cCCcceeEecCCCCCCCHHHHH----HHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIY----QLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~----~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
....++|||+|||+.+++++|+ ++|+.| |.|..|+|++++.+ +|||||+|.+.++|..||+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~----G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l 72 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARH----GKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSL 72 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHH----SCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhcccc----CcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHh
Confidence 4567899999999999999999 999999 99999999998664 899999999999999999853
No 296
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.31 E-value=1.6e-12 Score=107.28 Aligned_cols=59 Identities=10% Similarity=0.093 Sum_probs=54.3
Q ss_pred cCCcceeEecCCCC-CCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPF-DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~-~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..++++|||+|||+ .+++++|+++|++| |.|..|+|+++ +|||||+|.+.++|..||+.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~f----G~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~ 71 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPF----GVISNHLILNK------INEAFIEMATTEDAQAAVDY 71 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGG----SCEEEEEECSS------SSCEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhc----CCEEEEEEEcC------CCEEEEEECCHHHHHHHHHH
Confidence 34689999999999 99999999999999 99999999875 58999999999999999974
No 297
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.30 E-value=4.3e-12 Score=110.36 Aligned_cols=62 Identities=19% Similarity=0.312 Sum_probs=59.5
Q ss_pred cceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
+++|||+|||+.+++++|+++|+.| |.|..|++++++.+|.++|||||+|.+.++|..||+.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~----G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 63 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSI----GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHH
Confidence 5899999999999999999999999 9999999999988999999999999999999999974
No 298
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.30 E-value=2.8e-12 Score=105.43 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=57.0
Q ss_pred CcceeEecCCCCCC------CHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 335 IKKTVFVGNLPFDV------KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 335 ~~~tLfV~NLp~~~------teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..++|||+|||+.+ ++++|+.+|+.| |.|..|+|+ +.+|.++|||||+|.+.++|..||..|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~----G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l 81 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF----GKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNA 81 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG----SCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHC
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC----CCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 46899999999999 789999999999 999999988 367999999999999999999999864
No 299
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=5.6e-12 Score=103.89 Aligned_cols=63 Identities=21% Similarity=0.294 Sum_probs=56.7
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+++|..| |.|..|.|+.+ +.++|||||+|.+.++|..||+.|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l 81 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKY----GAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGR 81 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHc
Confidence 3467899999999999999999999999 99999999765 558999999999999999999653
No 300
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.29 E-value=4.5e-12 Score=111.28 Aligned_cols=63 Identities=24% Similarity=0.383 Sum_probs=59.3
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCC--CCceEEEEEecCHHHHHHHHHh
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMR--VGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g--~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..++|||+|||+.+++++|+++|+.| |.|..|+|++++.+| .++|||||+|.+.++|..||+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 66 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQY----GAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNA 66 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999 999999999998876 8999999999999999999975
No 301
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.28 E-value=6.1e-12 Score=104.52 Aligned_cols=61 Identities=23% Similarity=0.520 Sum_probs=56.2
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
.+.++|||+|||+.+++++|+.+|+.| |.|..|.|+++ +.++|||||+|.+.++|..||+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~ 66 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKY----GPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDH 66 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHH
Confidence 457899999999999999999999999 99999999976 45699999999999999999974
No 302
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=1.3e-11 Score=102.64 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=65.8
Q ss_pred CCcccEEEEeCCCCcC-----------cHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEE
Q 015686 222 GKLLRTIFVGNLPLKV-----------KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIV 290 (402)
Q Consensus 222 ~~~~~tVfVgNLP~~v-----------tee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~ 290 (402)
+..+++|+|.||.... ++++|+.+|++||.|..|.|+ .. .++|||||+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-~~--------------------~~~G~afV~ 70 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-DR--------------------HPDGVASVS 70 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-TT--------------------CTTCEEEEE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-cC--------------------CCCEEEEEE
Confidence 3457999999994433 268999999999999999662 11 145899999
Q ss_pred EeechhHHHHHh-ccceEEcceeeccccCCCcc
Q 015686 291 FKSEQSTEAALA-FNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 291 F~s~e~A~~Al~-lng~~l~Gr~I~V~~a~~~~ 322 (402)
|.+.++|..|+. |||..|.|+.|.|.++.+..
T Consensus 71 f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 71 FRDPEEADYCIQTLDGRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CSCHHHHHHHHHHSTTCEETTEECEEEECCSCC
T ss_pred ECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 999999999995 99999999999999987643
No 303
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.27 E-value=4e-12 Score=105.53 Aligned_cols=65 Identities=18% Similarity=0.174 Sum_probs=58.5
Q ss_pred CCcceeEecCCCCCCCHHHHH---HHhccCCCCCCCeEEEEEeecCCCC---CCceEEEEEecCHHHHHHHHHhC
Q 015686 334 DIKKTVFVGNLPFDVKDEEIY---QLFCGLNDLESSVEAVRVIRHPHMR---VGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~---~~F~~f~~~~G~I~~vrI~~d~~~g---~skG~aFV~F~s~e~A~~Al~~l 402 (402)
...++|||+|||+.+++++|+ ++|..| |.|..|.|+++..++ .++|||||+|.+.++|.+||+.|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~----G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~l 83 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKF----GKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCV 83 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTT----SCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhcc----CCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHh
Confidence 356899999999999999999 999999 999999999987644 56699999999999999999864
No 304
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=7.8e-12 Score=101.48 Aligned_cols=62 Identities=18% Similarity=0.244 Sum_probs=55.7
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+++|..| |.| +|+.+ .+|.++|||||+|.+.++|..||..|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l 73 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKA----TFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSC 73 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSC----SEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHh
Confidence 4567999999999999999999999999 866 67777 67899999999999999999999854
No 305
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.26 E-value=1.5e-11 Score=101.48 Aligned_cols=59 Identities=17% Similarity=0.096 Sum_probs=54.6
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
....++|||+|||+.+++++|+++|..| |.|..|.|+.+ |||||+|.+.++|..||+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l 70 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREA----GDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKL 70 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGG----SCEEEEEEETT-------TEEEEEESSHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEecC-------CEEEEEECCHHHHHHHHHHH
Confidence 3457899999999999999999999999 99999999876 89999999999999999865
No 306
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=1.8e-11 Score=95.99 Aligned_cols=60 Identities=17% Similarity=0.352 Sum_probs=55.0
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||..+++++|+++|+.| |.|..|+++++ +|||||+|.+.++|..|++.|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~----G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQF----GEIRTITVVQR------QQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTT----SCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTT
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhC----CCEeEEEEECC------CCEEEEEECCHHHHHHHHHHh
Confidence 4567899999999999999999999999 99999999864 799999999999999999853
No 307
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.26 E-value=8.2e-12 Score=119.02 Aligned_cols=75 Identities=23% Similarity=0.251 Sum_probs=67.2
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|||+|||+++++++|+.+|+.||.|..|+|+.. .+|||||+|.+.++|..||.
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~----------------------~~g~afV~f~~~~~A~~A~~ 262 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG----------------------RHDIAFVEFDNEVQAGAARD 262 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC----------------------CCcEEEEEeCCHHHHHHHHH
Confidence 34689999999999999999999999999999988421 13799999999999999996
Q ss_pred -ccceEEc-ceeeccccCC
Q 015686 303 -FNMAVIG-GNHIRLDRAC 319 (402)
Q Consensus 303 -lng~~l~-Gr~I~V~~a~ 319 (402)
|||..|. |+.|.|.++.
T Consensus 263 ~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 263 ALQGFKITQNNAMKISFAK 281 (282)
T ss_pred HcCCcEeCCCCEEEEEEec
Confidence 9999999 9999999874
No 308
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=9.3e-12 Score=101.08 Aligned_cols=63 Identities=22% Similarity=0.324 Sum_probs=56.8
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+++|..| + .|.+++++.++.++|||||+|.+.++|..||+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 74 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS----V---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 74 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC----S---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC----e---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHh
Confidence 4567999999999999999999999987 3 5778888888999999999999999999999753
No 309
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.26 E-value=8.5e-12 Score=99.82 Aligned_cols=57 Identities=28% Similarity=0.356 Sum_probs=50.9
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHH
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLL 398 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~A 398 (402)
..+..+|||+|||+.+++++|+++|+.| |.|..|+|+++ ++|||||+|.++++|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~----G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQY----GEVVDVFIPKP-----FRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEECCSS-----CCSEEEEEESCHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcc----CCEEEEEEeeC-----CCCEEEEEECCHHHHHHH
Confidence 3467899999999999999999999999 99999999885 799999999999999854
No 310
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.26 E-value=6.9e-12 Score=114.66 Aligned_cols=105 Identities=13% Similarity=0.149 Sum_probs=74.4
Q ss_pred echhHHHHHh-c--cceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEE
Q 015686 293 SEQSTEAALA-F--NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA 369 (402)
Q Consensus 293 s~e~A~~Al~-l--ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~ 369 (402)
+.+.+..|+. . ....+.+....|.+...................++|||+|||+.+++++|+.+|+.| |.|..
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~----G~v~~ 138 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDK----GQVLN 138 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTS----CCEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcC----CCEEE
Confidence 3456667775 4 455666655555443210000000000011235899999999999999999999999 99999
Q ss_pred EEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 370 VRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 370 vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
|+|+++. +|.++|||||+|.+.++|..||.++
T Consensus 139 v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~ 170 (193)
T 2voo_A 139 IQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP 170 (193)
T ss_dssp EEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT
T ss_pred EEEEECC-CCCcccEEEEEECCHHHHHHHHHhC
Confidence 9999985 4899999999999999999999764
No 311
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=6.5e-12 Score=104.01 Aligned_cols=63 Identities=25% Similarity=0.422 Sum_probs=57.8
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
....++|||+|||..+++++|+++|+.| |.|..|+|+++. +.++|||||+|.+.++|.+|++.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~ 88 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQF----GKILDVEIIFNE--RGSKGFGFVTFENSADADRAREK 88 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGT----CCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHH
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhc----CCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHH
Confidence 4467899999999999999999999999 999999999984 34899999999999999999974
No 312
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.24 E-value=5.3e-12 Score=105.98 Aligned_cols=59 Identities=19% Similarity=0.312 Sum_probs=54.1
Q ss_pred cCCcceeEecCCCCC-CCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFD-VKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~-~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..++++|||+|||++ +++++|+++|+.| |.|..|+|++ ++|||||+|.+.++|..||+.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~f----G~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~ 81 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPY----GKIKNYILMR------MKSQAFIEMETREDAMAMVDH 81 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTT----SCCSEEEEET------TTTEEEEECSSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhc----CCEEEEEEec------CCCEEEEEECCHHHHHHHHHH
Confidence 456899999999998 9999999999999 9999999974 489999999999999999974
No 313
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.89 E-value=6.6e-13 Score=110.86 Aligned_cols=65 Identities=20% Similarity=0.156 Sum_probs=60.8
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEE--------EEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA--------VRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~--------vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.+.++|||+|||+.+++++|+++|+.| |.|.. |+|++++.+|.++|||||+|.+.++|..||+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 77 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQI----GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWF 77 (116)
Confidence 457899999999999999999999999 99998 999999889999999999999999999999754
No 314
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.24 E-value=5.2e-12 Score=114.02 Aligned_cols=75 Identities=21% Similarity=0.280 Sum_probs=67.4
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcC-CeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFG-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G-~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
..++|||+|||+.+++++|+.+|+.|| .|..|+|.. + ++|||||+|.+.++|..|+.
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~----~------------------~~g~afV~f~~~~~A~~A~~ 176 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ----K------------------DRKMALIQMGSVEEAVQALI 176 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESS----T------------------TSSCEEEECSSHHHHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEe----C------------------CCcEEEEEeCCHHHHHHHHH
Confidence 368999999999999999999999999 999998832 0 24899999999999999996
Q ss_pred -ccceEEc-ceeeccccCCC
Q 015686 303 -FNMAVIG-GNHIRLDRACP 320 (402)
Q Consensus 303 -lng~~l~-Gr~I~V~~a~~ 320 (402)
|||..|. |+.|.|.++.+
T Consensus 177 ~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 177 DLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp HHTSSCCSSCCSCCEEEECC
T ss_pred HhcCCccCCCCeEEEEeecc
Confidence 9999999 99999999864
No 315
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.24 E-value=1.1e-12 Score=106.59 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=57.1
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHH
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~ 400 (402)
.+.++|||+|||+.+++++|+.+|..| |.|.. .++.+..+|.++|||||+|.+.++|..||+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~ 76 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISEL----FAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE 76 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHH----HHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh----CCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh
Confidence 357899999999999999999999999 88887 677777889999999999999999999997
No 316
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=2.9e-12 Score=106.36 Aligned_cols=66 Identities=15% Similarity=0.267 Sum_probs=54.7
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+++|..| |.|..|.+..+..+|.++|||||+|.+.++|..||+.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 87 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARF----QEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLV 87 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHH----HHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh----CCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHh
Confidence 3467899999999999999999999999 88843322222236889999999999999999999864
No 317
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.23 E-value=1.8e-11 Score=104.86 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=55.7
Q ss_pred cCCcceeEecCCCCCCCHHHHH----HHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIY----QLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~----~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+ ++|+.| |.|..|.+.+ +|.++|||||+|.+.++|..||+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~----G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~l 92 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQ----GDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAF 92 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHH----SCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccC----CCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHH
Confidence 4567899999999999999876 699999 9999988754 5789999999999999999999764
No 318
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=2.1e-11 Score=96.88 Aligned_cols=57 Identities=23% Similarity=0.286 Sum_probs=52.8
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+.++|||+|||..+++++|+++|+.| |.|..|+|+ +|||||+|.+.++|..||+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~ 61 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQY----GKVLECDII--------KNYGFVHIEDKTAAEDAIRN 61 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTS----SCEEEEEEE--------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEE--------CCEEEEEECCHHHHHHHHHH
Confidence 4567999999999999999999999999 999999987 67999999999999999974
No 319
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.22 E-value=1.1e-11 Score=115.33 Aligned_cols=74 Identities=22% Similarity=0.304 Sum_probs=67.1
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcC-CeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFG-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G-~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~- 302 (402)
.++|||+|||+++++++|+.+|+.|| .|..|+|+. + ++|||||+|.+.++|..|+.
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~---------~-------------~~g~afV~f~~~~~A~~Ai~~ 208 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ---------K-------------DRKMALIQMGSVEEAVQALID 208 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS---------S-------------STTCEEEEESSHHHHHHHHHH
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE---------C-------------CCcEEEEEECCHHHHHHHHHH
Confidence 68999999999999999999999999 999998832 0 34899999999999999996
Q ss_pred ccceEEc-ceeeccccCCC
Q 015686 303 FNMAVIG-GNHIRLDRACP 320 (402)
Q Consensus 303 lng~~l~-Gr~I~V~~a~~ 320 (402)
|||..|. |+.|.|.++.+
T Consensus 209 l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 209 LHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp HTTCBSSSSCBCEEEECSS
T ss_pred HCCCccCCCCeEEEEEecC
Confidence 9999999 99999999864
No 320
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.22 E-value=1.5e-11 Score=99.10 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=54.3
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+++|+.| |.|..|.|+++ +|||||+|.+.++|..||+.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l 73 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRF----GSIRTIDHVKG------DSFAYIQYESLDAAQAACAKM 73 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTT----SCEEEEEECSS------SCCEEEEESSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHH
Confidence 3467899999999999999999999999 99999998754 789999999999999999753
No 321
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.22 E-value=6.5e-12 Score=100.96 Aligned_cols=63 Identities=21% Similarity=0.280 Sum_probs=56.4
Q ss_pred cCCcceeEecCCCCCCCHHHHH----HHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIY----QLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~----~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||..+++++|+ .+|..| |.|..|.|++ +|.++|||||+|.+.++|..|++.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~----G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l 71 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRF----GQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSM 71 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGG----SCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhC----CCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 4567999999999999999999 999999 9999998874 4778999999999999999999753
No 322
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.21 E-value=2.2e-11 Score=109.88 Aligned_cols=65 Identities=23% Similarity=0.272 Sum_probs=60.8
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+++|+.| |.|..|.|+.++ +|.++|||||+|.+.++|..||+.|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~----G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~l 149 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEF----GTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQY 149 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHT----SCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHh
Confidence 4567899999999999999999999999 999999999997 8999999999999999999999854
No 323
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.21 E-value=1.9e-11 Score=98.95 Aligned_cols=60 Identities=27% Similarity=0.469 Sum_probs=54.7
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+++|..| |.|..|+|+++ +|||||+|.+.++|..||+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l 71 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKY----GKAGEVFIHKD------KGFGFIRLETRTLAEIAKVEL 71 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTT----CCCSEEEEETT------TTEEEEECSSSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhc----CCeEEEEEecC------CCEEEEEECCHHHHHHHHHHh
Confidence 4567899999999999999999999999 99999999854 799999999999999999653
No 324
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.21 E-value=1.6e-11 Score=98.53 Aligned_cols=58 Identities=14% Similarity=0.094 Sum_probs=53.6
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.+.-|||+||++.+|+++|+++|.+| |.|..++++. ++|||||+|.+.++|..|++.|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~----G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~L 63 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQH----GPLVSFHPYL------NQGIALCKYTTREEANKAQMAL 63 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHH----SCEEEEEEET------TTTEEEEEESSHHHHHHHHHHH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhh----CCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHh
Confidence 46789999999999999999999999 9999999865 6999999999999999999865
No 325
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.21 E-value=1.4e-11 Score=99.93 Aligned_cols=56 Identities=23% Similarity=0.256 Sum_probs=52.9
Q ss_pred ceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
++|||+|||+.+++++|+++|+.| |.|..|.|+++ ++|||||+|.+.++|..||+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~ 56 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYY----GPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRG 56 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHH----CCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHH
Confidence 479999999999999999999999 99999999987 789999999999999999975
No 326
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.19 E-value=2.9e-11 Score=99.82 Aligned_cols=75 Identities=24% Similarity=0.321 Sum_probs=60.7
Q ss_pred cceeeccccCCCccccccCCCCCccCCcceeEecCCCCC-CCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEE
Q 015686 309 GGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFD-VKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYV 387 (402)
Q Consensus 309 ~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~-~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV 387 (402)
.|+.|.|..+..... .......++|||+|||+. +++++|+++|..| |.|..|.| ++|||||
T Consensus 6 ~g~~~~~~~s~~~~~------~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~----G~v~~v~i--------~~g~afV 67 (110)
T 1wf1_A 6 SGMSLKLQASNVTNK------NDPKSINSRVFIGNLNTALVKKSDVETIFSKY----GRVAGCSV--------HKGYAFV 67 (110)
T ss_dssp CSCCCCCCCCCSCCS------CCCTTCSSEEEECSCCCSSCCHHHHHHHHGGG----SCCSEEEE--------ETTEEEE
T ss_pred CCcccccccCCCCCC------CCCCCCCcEEEEeCCCcccCCHHHHHHHHHhC----CCeEEEEE--------eCCEEEE
Confidence 466777766643221 112334689999999999 9999999999999 99999988 4789999
Q ss_pred EecCHHHHHHHHHh
Q 015686 388 LFKTRLPIWLLRDV 401 (402)
Q Consensus 388 ~F~s~e~A~~Al~~ 401 (402)
+|.+.++|..||+.
T Consensus 68 ~f~~~~~A~~A~~~ 81 (110)
T 1wf1_A 68 QYSNERHARAAVLG 81 (110)
T ss_dssp ECSSSHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 99999999999964
No 327
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=2.4e-11 Score=100.14 Aligned_cols=59 Identities=22% Similarity=0.299 Sum_probs=54.4
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
...++|||+|||..+++++|+.+|..| |.|..|+|+++ +|||||+|.+.++|..||..|
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~----G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l 81 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPF----GQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSV 81 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHH----SCEEEEEEETT------TTEEEEEESSHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHc
Confidence 356899999999999999999999999 99999999876 789999999999999999653
No 328
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.19 E-value=3.6e-11 Score=97.52 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=52.8
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..++|||+|||..+++++|+.+|..| |.|..|+|++ ++|||||+|.+.++|..||..
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~----G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNF----GFILDFKHYP------EKGCCFIKYDTHEQAAVCIVA 82 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTT----SCCSEEEEET------TTTEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhC----CCEEEEEEec------CCCEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999 9999999973 589999999999999999965
No 329
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.19 E-value=1.7e-11 Score=113.02 Aligned_cols=68 Identities=18% Similarity=0.197 Sum_probs=59.1
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCe--eEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEI--DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I--~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
.++|||+|||+++++++|+.+|+.||.| .+++++.. .+. .+|||||+|.+.++|..||.
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~----~~~---------------~~g~gfV~f~~~~~A~~Ai~ 183 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSG----KSE---------------RSSSGLLEWDSKSDALETLG 183 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSC----CSS---------------SSEEEEEECSSHHHHHHHHH
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcC----CCC---------------CceEEEEEeCCHHHHHHHHH
Confidence 5789999999999999999999999998 88888432 111 34899999999999999995
Q ss_pred -ccceEEcce
Q 015686 303 -FNMAVIGGN 311 (402)
Q Consensus 303 -lng~~l~Gr 311 (402)
|||..|.|+
T Consensus 184 ~lng~~~~g~ 193 (205)
T 3tyt_A 184 FLNHYQMKNP 193 (205)
T ss_dssp HHTTCEECCS
T ss_pred HhCCCCccCC
Confidence 999999886
No 330
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.18 E-value=3.2e-11 Score=99.73 Aligned_cols=81 Identities=14% Similarity=0.121 Sum_probs=65.6
Q ss_pred cccEEEEeCC--CCcCc--------HHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEee
Q 015686 224 LLRTIFVGNL--PLKVK--------KKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKS 293 (402)
Q Consensus 224 ~~~tVfVgNL--P~~vt--------ee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s 293 (402)
+++.|.|.|+ |.++. +++|+.+|++||.|.+|.|++.+.. . .+.++|||||+|.+
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~--~-------------~~~~~G~~fV~f~~ 68 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDG--V-------------EVPGCGKIFVEFTS 68 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTT--B-------------CCTTTTEEEEEESS
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCC--C-------------CcCCcEEEEEEECC
Confidence 4789999998 44443 4799999999999999998553211 1 12357999999999
Q ss_pred chhHHHHHh-ccceEEcceeeccccCC
Q 015686 294 EQSTEAALA-FNMAVIGGNHIRLDRAC 319 (402)
Q Consensus 294 ~e~A~~Al~-lng~~l~Gr~I~V~~a~ 319 (402)
.++|.+|+. |||..|.||.|.|.++.
T Consensus 69 ~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 69 VFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 999999995 99999999999998864
No 331
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=1.4e-11 Score=97.61 Aligned_cols=56 Identities=23% Similarity=0.276 Sum_probs=51.7
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHH
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLR 399 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al 399 (402)
+.++|||+|||+.+++++|+++|..| |.|..|+|+++ ++|||||+|.+.++|.+|+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~ 59 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQY----GDVMDVFIPKP-----FRAFAFVTFADDQIAQSLC 59 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTT----SCCCEEECCSS-----CCSCCEEECSCHHHHHHTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHc----CCeeEEEEecC-----CCCEEEEEECCHHHHHHHh
Confidence 56899999999999999999999999 99999999875 7899999999999998754
No 332
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.17 E-value=2.3e-11 Score=101.79 Aligned_cols=60 Identities=13% Similarity=0.001 Sum_probs=54.1
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCC-CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLES-SVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G-~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..++|||+|||+.+++++|+++|..| | .|..|.|+.+ .++|||||+|.+.++|..||+.|
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~----G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~l 87 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLAREN----SLETTFSSVNTR----DFDGTGALEFPSEEILVEALERL 87 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHH----TCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHh----CCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHc
Confidence 45899999999999999999999999 8 8999988643 37999999999999999999754
No 333
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.17 E-value=1.9e-11 Score=98.14 Aligned_cols=61 Identities=23% Similarity=0.358 Sum_probs=53.9
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+.+|..| |.|..+ ..+|.++|||||+|.+.++|..||+.|
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~----g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l 73 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDA----LEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEK 73 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSE----EEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC----CcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 3467899999999999999999999999 877665 256889999999999999999999854
No 334
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.17 E-value=2.6e-11 Score=104.00 Aligned_cols=60 Identities=8% Similarity=0.104 Sum_probs=53.5
Q ss_pred ceeEecCC----CCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecC----HHH----HHHHHH
Q 015686 337 KTVFVGNL----PFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT----RLP----IWLLRD 400 (402)
Q Consensus 337 ~tLfV~NL----p~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s----~e~----A~~Al~ 400 (402)
..|||+|| |+.+++.+|+.+|+.| |.|..|.++.|+.||.++|||||+|.+ ++. |.+|+.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~f----GeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~ 74 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKY----GEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVR 74 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTT----SCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence 67999999 9999999999999999 999999999999999999999999996 433 666665
No 335
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.17 E-value=2.5e-11 Score=101.46 Aligned_cols=57 Identities=18% Similarity=0.111 Sum_probs=51.9
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..++|||+|||+.+++++|+++|..| |.|..|.|+.+ |||||+|.+.++|..||+.|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l 71 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREA----GDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKL 71 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGG----SCEEEEEECTT-------SEEEEEESSHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEecC-------CEEEEEECCHHHHHHHHHHh
Confidence 46899999999999999999999999 99999999875 89999999999999999853
No 336
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.16 E-value=4.7e-11 Score=96.25 Aligned_cols=57 Identities=18% Similarity=0.484 Sum_probs=51.7
Q ss_pred cCCcceeEecCCCC-CCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPF-DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~-~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+.++|||+|||+ .+++++|+.+|+.| |.|..|+|. +|||||+|.+.++|..||+.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~----G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~ 64 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPY----GHIMQINIK--------NAFGFIQFDNPQSVRDAIEC 64 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTT----CCCCEEEEE--------TTEEEEEESCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEEe--------CCEEEEEECCHHHHHHHHHH
Confidence 45689999999998 99999999999999 999999884 78999999999999999975
No 337
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.16 E-value=4.7e-11 Score=97.39 Aligned_cols=58 Identities=24% Similarity=0.305 Sum_probs=52.9
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+++|..| |.|..|.|+ +|||||+|.+.++|..||+.|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~----G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l 65 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQF----GKLERVKKL--------KDYAFIHFDERDGAVKAMEEM 65 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHH----SCEEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHH
Confidence 4567999999999999999999999999 999999886 459999999999999999853
No 338
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=3.7e-11 Score=96.94 Aligned_cols=60 Identities=20% Similarity=0.293 Sum_probs=53.1
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
...++|||+|||+.+++++|+.+|..| |.|. ++++.+ .++|||||+|.+.++|..||+.|
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~----G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l 76 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALREL----GSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCL 76 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHT----TCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhc----CCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHh
Confidence 347899999999999999999999999 8887 677754 57999999999999999999753
No 339
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.16 E-value=6.1e-11 Score=96.14 Aligned_cols=57 Identities=18% Similarity=0.520 Sum_probs=52.7
Q ss_pred cCCcceeEecCCCC-CCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPF-DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~-~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+.++|||+|||+ .+++++|+.+|+.| |.|..|+| ++|||||+|.+.++|..||..
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~----G~v~~v~i--------~~g~afV~f~~~~~A~~Ai~~ 76 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPY----GHIMQINI--------KNAFGFIQFDNPQSVRDAIEX 76 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGG----SCEEEEEE--------CSSEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEE--------eCCEEEEEECCHHHHHHHHHH
Confidence 45689999999998 99999999999999 99999988 378999999999999999974
No 340
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.16 E-value=2.5e-11 Score=100.93 Aligned_cols=58 Identities=24% Similarity=0.187 Sum_probs=53.0
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..++|||+|||+.+++++|+++|..| |.|..|.|+. ++|||||+|.+.++|..||+.|
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~----G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l 66 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRF----GSLGRVLLPE------GGITAIVEFLEPLEARKAFRHL 66 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCS------SSSCEEEEESCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHh
Confidence 46899999999999999999999999 9999998874 5889999999999999999753
No 341
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=6.9e-11 Score=94.31 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=52.3
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+.++|||+|||+.+++++|+++|+.| |.|..|.|++ |||||+|.++++|..||+.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~ 63 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEY----GPVIECDIVK--------DYAFVHMERAEDAVEAIRG 63 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTT----SCCCEEEECS--------SEEEEEESCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEC--------CEEEEEECCHHHHHHHHHH
Confidence 4567999999999999999999999999 9999999974 4999999999999999975
No 342
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.15 E-value=7.5e-11 Score=99.76 Aligned_cols=82 Identities=16% Similarity=0.175 Sum_probs=66.5
Q ss_pred ccEEEEeCCC--CcC---cHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHH
Q 015686 225 LRTIFVGNLP--LKV---KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (402)
Q Consensus 225 ~~tVfVgNLP--~~v---tee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~ 299 (402)
+++|+|.||- .++ -+++|++.|++||.|.+|.|++.+...... +.++|||||.|.+.++|.+
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~-------------~~~~G~~FV~F~~~e~A~~ 86 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEED-------------AEIIVKIFVEFSIASETHK 86 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTT-------------CEEEEEEEEEESSHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccC-------------CcceEEEEEEECCHHHHHH
Confidence 7899999983 222 478999999999999999997754321111 2256999999999999999
Q ss_pred HHh-ccceEEcceeeccccCC
Q 015686 300 ALA-FNMAVIGGNHIRLDRAC 319 (402)
Q Consensus 300 Al~-lng~~l~Gr~I~V~~a~ 319 (402)
|+. |||..|.||.|.|.++.
T Consensus 87 Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 87 AIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp HHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHCCCEECCcEEEEEEcC
Confidence 995 99999999999998874
No 343
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.15 E-value=5.8e-11 Score=98.30 Aligned_cols=58 Identities=21% Similarity=0.400 Sum_probs=53.4
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+.+|+.| |.|..|.|+ +|||||+|.+.++|..||+.|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~----G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l 85 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPF----GPMKEVKIL--------NGFAFVEFEEAESAAKAIEEV 85 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTT----SCCCEEEEE--------TTEEEEECSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCEEEEEEE--------CCEEEEEECCHHHHHHHHHHc
Confidence 4467999999999999999999999999 999999987 789999999999999999753
No 344
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=3.7e-11 Score=101.09 Aligned_cols=60 Identities=13% Similarity=0.102 Sum_probs=53.6
Q ss_pred cCCcceeEe--cCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFV--GNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV--~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++||| +||++.+++++|+++|+.| |.|..|.|+. .+|||||+|.++++|..|++.|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~f----G~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~l 83 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKC----GLVDALLMPP------NKPYSFARYRTTEESKRAYVTL 83 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHH----SCEEEEECCT------TCSCEEEEESSHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhc----CCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHh
Confidence 346789999 7799999999999999999 9999998764 3799999999999999999865
No 345
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.14 E-value=7e-11 Score=112.11 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=67.1
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
.++|||+|||+.+++++|+.+|+.||.|..|+|+... + +.++|||||+|.+.++|..||. |
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~---~---------------g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD---R---------------GRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET---T---------------SCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC---C---------------CCcCcEEEEEeCCHHHHHHHHHHh
Confidence 4789999999999999999999999999999986542 2 2356999999999999999996 7
Q ss_pred -cceEEc---ceeeccccCCCc
Q 015686 304 -NMAVIG---GNHIRLDRACPP 321 (402)
Q Consensus 304 -ng~~l~---Gr~I~V~~a~~~ 321 (402)
++..+. |+.|.|.++...
T Consensus 158 ~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 158 GDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHSCEESSSSCCBCEEEECCCE
T ss_pred cCCeEEecCCCceEEEeecccc
Confidence 555555 899999988754
No 346
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.14 E-value=1.1e-11 Score=107.27 Aligned_cols=63 Identities=14% Similarity=0.165 Sum_probs=54.3
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEE--------EEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAV--------RVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~v--------rI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|||+.+++++|+.+|..| |.|..| ++. .+|.++|||||+|.+.++|..||..|
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~----G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~l 112 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRY----VDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEA 112 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGG----CCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh----CCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHh
Confidence 3467899999999999999999999999 887763 333 45889999999999999999999853
No 347
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=1.6e-10 Score=92.60 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=51.5
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHH
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~ 400 (402)
..++|||+|||+.+++++|+.+|..| |.|..| +.++.+|. ||||+|.+.++|..||.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~----G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~ 63 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAF----GPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS 63 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGT----SCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh
Confidence 46799999999999999999999999 999987 66666664 99999999999999997
No 348
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=1.5e-10 Score=93.60 Aligned_cols=59 Identities=25% Similarity=0.325 Sum_probs=52.7
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+.++|||+|||+.+++++|+.+|..|+. |.|..|.++ +|||||+|.+.++|..||..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~--g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~ 70 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKP--GAVERVKKI--------RDYAFVHFSNREDAVEAMKA 70 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTST--TCEEEEEEC--------SSEEEEEESSHHHHHHHHHH
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCC--cceEEEEEe--------CCeEEEEeCCHHHHHHHHHH
Confidence 456799999999999999999999999954 789888764 67999999999999999984
No 349
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=9.9e-11 Score=92.99 Aligned_cols=57 Identities=19% Similarity=0.214 Sum_probs=52.1
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+.++|||+|||+.+++++|+.+|+.| |.|..|+|++ |||||+|.+.++|..||+.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~ 62 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERR----GRVIECDVVK--------DYAFVHMEKEADAKAAIAQ 62 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHH----SCEEEEEECS--------SCEEEEESCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcC----CCEEEEEEEC--------CEEEEEECCHHHHHHHHHH
Confidence 3467899999999999999999999999 9999999974 4999999999999999975
No 350
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.11 E-value=4.8e-11 Score=93.77 Aligned_cols=59 Identities=24% Similarity=0.431 Sum_probs=51.6
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCC-------CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHH
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLES-------SVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLR 399 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G-------~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al 399 (402)
+.++|||+|||+.+++++|+++|..|+..+| .|..|+++++ +|||||+|.+.++|..||
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~ 70 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM 70 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH
Confidence 5689999999999999999999999822224 7999988754 799999999999999998
No 351
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=5.7e-11 Score=94.85 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=50.6
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCC-eEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESS-VEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~-I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.+.++|||+|||+.+++++|+++|..| |. |..+.+. ++|||||+|.+.++|..||+.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l 64 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDR----KLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETL 64 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHT----TCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHc----CCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHc
Confidence 457899999999999999999999999 88 6666552 5899999999999999999753
No 352
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.09 E-value=4.3e-11 Score=98.75 Aligned_cols=71 Identities=18% Similarity=0.328 Sum_probs=59.3
Q ss_pred EeCCCCcCcHHHHHHHh------------hhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhH
Q 015686 230 VGNLPLKVKKKTLIKEF------------IKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (402)
Q Consensus 230 VgNLP~~vtee~L~~~F------------~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A 297 (402)
+.|||+.+++++|+.+| ++||.|.+|+|++.. . +.++|||||.|.+.++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~---~---------------~~~~G~~fV~f~~~~~A 81 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL---G---------------DHLVGNVYVKFRREEDA 81 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS---S---------------SSSEEEEEEEESCHHHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC---C---------------CCccEEEEEEECCHHHH
Confidence 66788888888887777 999999999985421 1 23679999999999999
Q ss_pred HHHHh-ccceEEcceeeccccC
Q 015686 298 EAALA-FNMAVIGGNHIRLDRA 318 (402)
Q Consensus 298 ~~Al~-lng~~l~Gr~I~V~~a 318 (402)
.+|+. |||..|.||.|.|.++
T Consensus 82 ~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 82 EKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHHCCCEECCEEEEEEEc
Confidence 99995 9999999999999875
No 353
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.05 E-value=1.6e-10 Score=91.55 Aligned_cols=56 Identities=20% Similarity=0.145 Sum_probs=50.5
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..++|||+|||+.+++++|+++|..| .|..|+|. .++|||||+|.+.++|..||+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-----~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~ 59 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-----DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQM 59 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-----CCCCEEEE------GGGTEEEECCSCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-----CeEEEEEe------CCCcEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999998 47788774 4799999999999999999974
No 354
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.05 E-value=4.9e-10 Score=92.64 Aligned_cols=65 Identities=11% Similarity=-0.064 Sum_probs=56.3
Q ss_pred CCcceeEecCCCC-----CCCHHHHHHHhccCCCCCCCeEEEEEeecCCC-CCCceEEEEEecCHHHHHHHHHhC
Q 015686 334 DIKKTVFVGNLPF-----DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM-RVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 334 ~~~~tLfV~NLp~-----~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~-g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.++++|+|+||.. .-++++|+++|++| |.|..|.|++++.+ +.++|||||+|.++++|.+|++.|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~----G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~l 76 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKY----GKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDL 76 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGG----SCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhc----CCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHH
Confidence 4678999999963 23689999999999 99999999998754 689999999999999999999764
No 355
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.8e-10 Score=92.32 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=53.4
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEE-EeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVR-VIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vr-I~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
...++|||+|||+.+++++|+.+|..| |.|..|+ |+.++.+| .|||+|.+.++|..||+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~ 73 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQY----GVVESCEQVNTDSETA----VVNVTYSSKDQARQALDK 73 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHH----SCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhc----CCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHH
Confidence 356899999999999999999999999 9999995 88876543 499999999999999974
No 356
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=5.6e-10 Score=89.93 Aligned_cols=58 Identities=10% Similarity=0.041 Sum_probs=51.7
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..+.++|||+|| .+++++|+.+|..| |.|..|.|. .++|||||+|.+.++|..||+.|
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~----G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l 69 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPF----GNIIDLSMD------PPRNCAFVTYEKMESADQAVAEL 69 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTT----SCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHT
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhC----CCEEEEEec------CCCCEEEEEECCHHHHHHHHHHh
Confidence 345789999996 89999999999999 999999884 46899999999999999999764
No 357
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.03 E-value=4.2e-10 Score=96.78 Aligned_cols=59 Identities=14% Similarity=0.153 Sum_probs=52.9
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceE-EEEEecCHHHHHHHHHhC
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGI-AYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~-aFV~F~s~e~A~~Al~~l 402 (402)
.-..|||+||++.+|+++|+++|+.| |.|..|.|+.+ ++|| |||+|.+.++|..|++.|
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~y----G~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~L 86 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKF----GTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSL 86 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTS----SCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCc----CCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHc
Confidence 34678899999999999999999999 99999988765 3688 999999999999999864
No 358
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.03 E-value=5.5e-10 Score=99.68 Aligned_cols=60 Identities=13% Similarity=0.103 Sum_probs=54.0
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
...+|||+||++.+++++|+++|+.| |.|..|.|+.+ .++|||||+|.+.++|..|++.|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~f----G~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~L 104 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKF----GTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSL 104 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHH----SCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhc----CCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHh
Confidence 34679999999999999999999999 99999998754 25899999999999999999865
No 359
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.03 E-value=4e-10 Score=111.86 Aligned_cols=74 Identities=16% Similarity=0.287 Sum_probs=61.4
Q ss_pred CCcccEEEEeC--CCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHH
Q 015686 222 GKLLRTIFVGN--LPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (402)
Q Consensus 222 ~~~~~tVfVgN--LP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~ 299 (402)
..+.++||||| |++.+|+++|+++|++||.|.+|.+.. ++|||||+|.+.++|+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----------------------~kgfaFV~f~~~~~A~~ 71 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----------------------NKPYSFARYRTTEESKR 71 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----------------------TCSEEEEEESSHHHHHH
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----------------------CCCEEEEEECCHHHHHH
Confidence 44578999999 588999999999999999998877621 35899999999999999
Q ss_pred HHh-ccceEEc---ce--eeccccC
Q 015686 300 ALA-FNMAVIG---GN--HIRLDRA 318 (402)
Q Consensus 300 Al~-lng~~l~---Gr--~I~V~~a 318 (402)
|+. |||..+. |+ .|.|.++
T Consensus 72 Ai~~lnG~~~~~~~g~~~~ly~~~~ 96 (345)
T 3tht_A 72 AYVTLNGKEVVDDLGQKITLYLNFV 96 (345)
T ss_dssp HHHHTTTCEEECTTSCEEECEEEEC
T ss_pred HHHHhCCCccccccCCceEEEEEEe
Confidence 996 9999873 45 5666665
No 360
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.95 E-value=1.9e-09 Score=91.96 Aligned_cols=56 Identities=16% Similarity=0.258 Sum_probs=49.8
Q ss_pred ceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceE-EEEEecCHHHHHHHHHhC
Q 015686 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGI-AYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~-aFV~F~s~e~A~~Al~~l 402 (402)
..|||+||++.+++++|+++|+.| |.|..|.|+.. .|| |||+|.+.++|..|++.|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~y----G~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~L 82 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPV----GKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAAL 82 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTT----SCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHH
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhc----CCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHh
Confidence 446799999999999999999999 99999998652 286 999999999999999864
No 361
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.95 E-value=1.2e-09 Score=88.62 Aligned_cols=57 Identities=16% Similarity=0.070 Sum_probs=47.5
Q ss_pred cCCcce-eEecCCCCCCCHHH----HHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKT-VFVGNLPFDVKDEE----IYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~t-LfV~NLp~~~teed----L~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
.+++.| |||+|||+.+++++ |+++|+.|+ |.|..| +| |+|||.|.+.++|.+|++.|
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yG---G~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l 66 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCG---GKVLSI-------TG---CSAILRFINQDSAERAQKRM 66 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTT---CCEEEC-------CT---TCEEEEESSHHHHHHHHHHH
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcC---CeeEEE-------ec---CEEEEEECCHHHHHHHHHHh
Confidence 345666 99999999999888 558999992 389887 23 99999999999999999754
No 362
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.91 E-value=1.4e-09 Score=91.88 Aligned_cols=57 Identities=11% Similarity=0.049 Sum_probs=51.0
Q ss_pred cCCcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+.++|||+|| .+++++|+.+|+.| |.|..|.|. .++|||||+|.+.++|..||+.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~----G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~ 92 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPF----GNIIDLSMD------PPRNCAFVTYEKMESADQAVAE 92 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTT----CCCSCEEEE------TTTTEEEEECSSHHHHHHHHHH
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHcc----CCEEEEEEe------CCCCEEEEEECCHHHHHHHHHH
Confidence 346789999996 69999999999999 999999885 3689999999999999999965
No 363
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.90 E-value=1.1e-09 Score=103.45 Aligned_cols=84 Identities=17% Similarity=0.209 Sum_probs=62.8
Q ss_pred cceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCC---------CHHHHHHHhccCCCCCCCeEEEEEee
Q 015686 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDV---------KDEEIYQLFCGLNDLESSVEAVRVIR 374 (402)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~---------teedL~~~F~~f~~~~G~I~~vrI~~ 374 (402)
+...+.|+.....+..... ...+.....++|||+||+..+ ++++|+.+|+.| |.|..|+|+.
T Consensus 107 ~~~D~fGr~k~~~~~d~~~-----g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f----G~I~~v~v~~ 177 (240)
T 3u1l_A 107 EVLDCFGREKFADYREDMG-----GIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL----GDIDRIRYVE 177 (240)
T ss_dssp SSBCTTSSBCGGGTC--------------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT----SCEEEEEEEG
T ss_pred cCcccccchhcccchhccc-----CcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHcc----CCEEEEEEEC
Confidence 4455567765554432111 112224467999999999998 799999999999 9999999985
Q ss_pred cCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 375 HPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 375 d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
++|||||+|.+.++|..|+++|
T Consensus 178 ------~kG~AFV~F~~~~~Ae~A~~am 199 (240)
T 3u1l_A 178 ------SKNCGFVKFKYQANAEFAKEAM 199 (240)
T ss_dssp ------GGTEEEEEESSHHHHHHHHHHH
T ss_pred ------CCCEEEEEeCCHHHHHHHHHHh
Confidence 4899999999999999999865
No 364
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.90 E-value=2.1e-09 Score=90.23 Aligned_cols=76 Identities=16% Similarity=0.121 Sum_probs=62.2
Q ss_pred CcccEEEEeCCCC--c--------CcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEe
Q 015686 223 KLLRTIFVGNLPL--K--------VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (402)
Q Consensus 223 ~~~~tVfVgNLP~--~--------vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~ 292 (402)
.++++|.|.||=. + -.+++|+..|++||.|.+|.|.+. . .+|||||.|.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~----~-----------------~~G~~fV~f~ 63 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN----S-----------------AQGNVYVKCP 63 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT----C-----------------TTCCEEEECS
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC----C-----------------CcEEEEEEEC
Confidence 3478899999732 2 125688999999999999988321 1 2589999999
Q ss_pred echhHHHHHh-ccceEEcceeeccccCC
Q 015686 293 SEQSTEAALA-FNMAVIGGNHIRLDRAC 319 (402)
Q Consensus 293 s~e~A~~Al~-lng~~l~Gr~I~V~~a~ 319 (402)
+.++|.+|+. |||..|.||.|.|.++.
T Consensus 64 ~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 64 SIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 9999999995 99999999999999875
No 365
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=5.5e-09 Score=85.70 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=59.6
Q ss_pred ccEEEEeCCC-------CcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhH
Q 015686 225 LRTIFVGNLP-------LKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (402)
Q Consensus 225 ~~tVfVgNLP-------~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A 297 (402)
..+|.|.-.+ .++++++|+.+|++||.|..|+|+. +++|||||+|.+.++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~----------------------~~rGfaFVeF~~~~~A 67 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS----------------------KKPGTAVVEFATVKAA 67 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES----------------------SSSSEEEEEESCHHHH
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc----------------------CCCCEEEEEECCHHHH
Confidence 3456666544 4689999999999999999998841 1569999999999999
Q ss_pred HHHHh-ccceEEcceeeccccCCCcc
Q 015686 298 EAALA-FNMAVIGGNHIRLDRACPPR 322 (402)
Q Consensus 298 ~~Al~-lng~~l~Gr~I~V~~a~~~~ 322 (402)
..||. +++ +.|+.|.|.++..+.
T Consensus 68 ~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 68 ELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp HHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred HHHHHhcCC--CCCCeEEEEEccCCC
Confidence 99996 444 679999999987553
No 366
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.82 E-value=4.3e-09 Score=86.89 Aligned_cols=65 Identities=14% Similarity=0.123 Sum_probs=55.1
Q ss_pred CCcceeEecCC--CCCCC--------HHHHHHHhccCCCCCCCeEEEEEeecCCC--CCCceEEEEEecCHHHHHHHHHh
Q 015686 334 DIKKTVFVGNL--PFDVK--------DEEIYQLFCGLNDLESSVEAVRVIRHPHM--RVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 334 ~~~~tLfV~NL--p~~~t--------eedL~~~F~~f~~~~G~I~~vrI~~d~~~--g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
.|+++|+|.|| |..+. .++|+++|++| |.|..|.|++++.+ +.++|||||+|.+.++|.+|++.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~----G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ 78 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY----GLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQG 78 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT----SCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc----CCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHH
Confidence 36789999999 43443 47899999999 99999999998654 46899999999999999999976
Q ss_pred C
Q 015686 402 T 402 (402)
Q Consensus 402 l 402 (402)
|
T Consensus 79 l 79 (105)
T 3v4m_A 79 L 79 (105)
T ss_dssp H
T ss_pred h
Confidence 4
No 367
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.81 E-value=3.9e-09 Score=104.79 Aligned_cols=60 Identities=13% Similarity=0.087 Sum_probs=53.6
Q ss_pred cCCcceeEecC--CCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 333 YDIKKTVFVGN--LPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 333 ~~~~~tLfV~N--Lp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
..++++|||+| |++.+++++|+++|+.| |.|..|.++. +||||||+|.+.++|.+||+.|
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~----G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~l 76 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKC----GLVDALLMPP------NKPYSFARYRTTEESKRAYVTL 76 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTT----SCEEEEECCT------TCSEEEEEESSHHHHHHHHHHT
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhc----CCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHh
Confidence 45788999999 57899999999999999 9999987753 5899999999999999999876
No 368
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.78 E-value=1.5e-08 Score=84.02 Aligned_cols=62 Identities=13% Similarity=0.150 Sum_probs=51.6
Q ss_pred cCCcceeEecCCCCCCC-----------HHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFDVK-----------DEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~~t-----------eedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..++++|+|+||..... +++|+.+|.+| |.|..|.| .++. ++|||||+|.+.++|..||+.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~----G~v~~v~i-~~~~---~~G~afV~f~~~~~A~~Ai~~ 83 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF----GQIRKLLL-FDRH---PDGVASVSFRDPEEADYCIQT 83 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT----SCCSEEEE-ETTC---TTCEEEEECSCHHHHHHHHHH
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc----CCEeEEEE-ecCC---CCEEEEEEECCHHHHHHHHHH
Confidence 45689999999944432 58999999999 99999955 5543 899999999999999999976
Q ss_pred C
Q 015686 402 T 402 (402)
Q Consensus 402 l 402 (402)
|
T Consensus 84 l 84 (112)
T 2dit_A 84 L 84 (112)
T ss_dssp S
T ss_pred c
Confidence 5
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.72 E-value=1.4e-08 Score=85.73 Aligned_cols=64 Identities=11% Similarity=0.030 Sum_probs=54.6
Q ss_pred CcceeEecCCC--CCC---CHHHHHHHhccCCCCCCCeEEEEEeecCC----CCCCceEEEEEecCHHHHHHHHHhC
Q 015686 335 IKKTVFVGNLP--FDV---KDEEIYQLFCGLNDLESSVEAVRVIRHPH----MRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 335 ~~~tLfV~NLp--~~~---teedL~~~F~~f~~~~G~I~~vrI~~d~~----~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
++++|+|+||- ..+ -+++|++.|++| |.|..|.|++++. ++.++|||||+|.+.++|.+|++.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~----G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~L 91 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKF----GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL 91 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTT----SCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhcc----CCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHH
Confidence 67999999993 222 368999999999 9999999999854 4577899999999999999999864
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=7e-08 Score=79.06 Aligned_cols=47 Identities=17% Similarity=0.050 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 346 FDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 346 ~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..+++++|+++|++| |.|..|+|+ +.++|||||+|.++++|..||+.
T Consensus 27 ~~~te~~L~~~F~~~----G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~ 73 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKY----GEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQN 73 (100)
T ss_dssp CSCCHHHHHHHHHTT----SCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhc----CCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHh
Confidence 568999999999999 999999998 35899999999999999999975
No 371
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.69 E-value=2.4e-08 Score=80.21 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=60.1
Q ss_pred ccEEEEeCCCC----cCcH----HHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechh
Q 015686 225 LRTIFVGNLPL----KVKK----KTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQS 296 (402)
Q Consensus 225 ~~tVfVgNLP~----~vte----e~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~ 296 (402)
..||+|.-+|. .+-. .+|...|.+||.|..++|.. +.+||+|.+.++
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~-------------------------d~~fVtF~d~~s 61 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE-------------------------DKMWVTFLEGSS 61 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS-------------------------SSEEEEESSHHH
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec-------------------------CCEEEEECChHH
Confidence 47888888772 3333 67889999999999999843 359999999999
Q ss_pred HHHHHhccceEEcceeeccccCCC
Q 015686 297 TEAALAFNMAVIGGNHIRLDRACP 320 (402)
Q Consensus 297 A~~Al~lng~~l~Gr~I~V~~a~~ 320 (402)
|.+||.|||..+.||.|+|..+.+
T Consensus 62 AlaAi~mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 62 ALNVLSLNGKELLNRTITIALKSP 85 (91)
T ss_dssp HHHGGGGTTCEETTEEEEEEECCC
T ss_pred HHHHHhcCCeEeCCeEEEEEeCCC
Confidence 999999999999999999998764
No 372
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.66 E-value=6.3e-09 Score=85.67 Aligned_cols=57 Identities=19% Similarity=0.082 Sum_probs=46.8
Q ss_pred ecCCCCCCCHHHHHHHh------------ccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 341 VGNLPFDVKDEEIYQLF------------CGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 341 V~NLp~~~teedL~~~F------------~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
+.|||..+++++|+++| ++| |.|..|.|+++.. |.++|||||+|.++++|.+|++.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~----G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~l 88 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKY----GEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDL 88 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccC----CceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHH
Confidence 45566666777666655 999 9999999999854 789999999999999999999754
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=8.4e-08 Score=81.34 Aligned_cols=73 Identities=11% Similarity=0.040 Sum_probs=60.0
Q ss_pred cccEEEEeCCCCc-CcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEee-chhHHHHH
Q 015686 224 LLRTIFVGNLPLK-VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKS-EQSTEAAL 301 (402)
Q Consensus 224 ~~~tVfVgNLP~~-vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s-~e~A~~Al 301 (402)
..+.|||+||+++ ++.++|+.+|+.||.|..|.+.+. .-.|||.|.+ ..+|..|+
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g-----------------------~~tgfVrf~~~~~~A~~av 73 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG-----------------------AKEGIILFKEKAKEALGKA 73 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT-----------------------CSEEEEEESSCHHHHHHHH
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC-----------------------CCEEEEEECCChHHHHHHH
Confidence 3688999999999 999999999999999999988331 1279999999 78888888
Q ss_pred h-c--cceEEcceeeccccCC
Q 015686 302 A-F--NMAVIGGNHIRLDRAC 319 (402)
Q Consensus 302 ~-l--ng~~l~Gr~I~V~~a~ 319 (402)
. + ++..|.|..+.+....
T Consensus 74 ~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 74 KDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp HHTTTSCBCTTSSSEEEEECC
T ss_pred HHhhcCCcEEeCcEEEEEECC
Confidence 5 6 4667888777776543
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=3e-07 Score=77.94 Aligned_cols=61 Identities=15% Similarity=0.061 Sum_probs=54.4
Q ss_pred ccCCcceeEecCCCCC-CCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecC-HHHHHHHHHhC
Q 015686 332 LYDIKKTVFVGNLPFD-VKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT-RLPIWLLRDVT 402 (402)
Q Consensus 332 ~~~~~~tLfV~NLp~~-~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s-~e~A~~Al~~l 402 (402)
..++...|||+||+.. ++.++|+.+|+.| |.|.+|.|+++.. .|||.|.+ ..+|..|++.|
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~----G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~l 76 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNH----GEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDA 76 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSS----CCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHT
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhc----CCEEEEEEecCCC------EEEEEECCChHHHHHHHHHh
Confidence 3567899999999999 9999999999999 9999999998854 59999999 88999888754
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=3.1e-07 Score=74.18 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=59.1
Q ss_pred ccEEEEeCCCCc-----CcH----HHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeech
Q 015686 225 LRTIFVGNLPLK-----VKK----KTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQ 295 (402)
Q Consensus 225 ~~tVfVgNLP~~-----vte----e~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e 295 (402)
..||+|.-++.. +-. .+|...|.+||.|..++|.. +-+||+|.+.+
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~-------------------------d~~fVtF~d~~ 69 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQ-------------------------GQMLVTFADSH 69 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEET-------------------------TEEEEECSCSH
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEec-------------------------CcEEEEEcChH
Confidence 578999988743 322 56889999999999999843 24999999999
Q ss_pred hHHHHHhccceEEcceeeccccCC
Q 015686 296 STEAALAFNMAVIGGNHIRLDRAC 319 (402)
Q Consensus 296 ~A~~Al~lng~~l~Gr~I~V~~a~ 319 (402)
+|.+||.|||..+.||.|+|.+-.
T Consensus 70 sAl~AI~ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 70 SALSVLDVDGMKVKGRAVKISGPS 93 (95)
T ss_dssp HHHHHHHGGGSEETTEEEEEECCC
T ss_pred HHHHHHhcCCeeeCCeEEEEeccC
Confidence 999999999999999999998743
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.38 E-value=2.9e-07 Score=84.84 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=58.0
Q ss_pred CcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-ccceEEcceeecc
Q 015686 237 VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNMAVIGGNHIRL 315 (402)
Q Consensus 237 vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-lng~~l~Gr~I~V 315 (402)
-.+++|...|++||.|.++.|++....+.. .+.++|++||+|.+.++|.+|+. |||..|.||.|.|
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~-------------~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~ 207 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEE-------------DAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVA 207 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSST-------------TCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCccc-------------CcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEE
Confidence 357899999999999999999764432211 23467999999999999999996 9999999999999
Q ss_pred ccCC
Q 015686 316 DRAC 319 (402)
Q Consensus 316 ~~a~ 319 (402)
.++.
T Consensus 208 ~~~~ 211 (222)
T 3dxb_A 208 EVYD 211 (222)
T ss_dssp EECC
T ss_pred EEcC
Confidence 8864
No 377
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.33 E-value=7.2e-07 Score=74.69 Aligned_cols=60 Identities=10% Similarity=0.051 Sum_probs=49.6
Q ss_pred CcceeEecCCCCCC----------CHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 335 IKKTVFVGNLPFDV----------KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 335 ~~~tLfV~NLp~~~----------teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
++++|.|.||=... .+++|++.|++| |.|..|.|+++. ++|||||+|.+.++|.+|++.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kf----G~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~l 75 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKH----GGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNAL 75 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTT----TCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhcc----CCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHh
Confidence 57889999983221 146889999999 999999997762 5999999999999999999764
No 378
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=9.3e-05 Score=60.51 Aligned_cols=87 Identities=21% Similarity=0.202 Sum_probs=71.6
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhh-----cCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHH
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIK-----FGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~-----~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~ 299 (402)
..+|.|.|||..+.++-|.-+|+. =|+|.++.... +-|+|+|.+...|+.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------------------------~~AvItF~d~~va~r 62 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------------------------CGGVLTFREPADAER 62 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------------------------TEEEEEESSHHHHHH
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------------------------CcEEEEEcChHHHHH
Confidence 578999999999999999999996 25888776621 369999999999999
Q ss_pred HHhccceEEcceeeccccCCCccccccCCCCCccCCcceeEecCCCCCCC
Q 015686 300 ALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVK 349 (402)
Q Consensus 300 Al~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~t 349 (402)
.|+...+.|.|..|.|....+. ..++|++.|||+.+.
T Consensus 63 VL~k~~H~L~~~~LsV~P~~~~-------------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 63 VLAQADHELHGAQLSLRPAPPR-------------APARLLLQGLPPGTS 99 (104)
T ss_dssp HHTCSCCBSSSSBCEEEECCCC-------------CCCCCCCCSCCCCCC
T ss_pred HhcCCcceecCeEEEEEcCCCC-------------CcceEeeecCCCCCC
Confidence 9988788899999998765432 357899999998764
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.73 E-value=6.2e-05 Score=62.22 Aligned_cols=70 Identities=20% Similarity=0.150 Sum_probs=61.5
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhc-----CCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHH
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKF-----GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~-----G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~ 299 (402)
.++|-+-|||-.+++..|+.+...+ |.|..|.++.+ -|=|+|+|.+...|-+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----------------------H~GAivef~d~~~AgK 77 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----------------------FNGAIIIFRDSKFAAK 77 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----------------------TTEEEEECSCHHHHHH
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----------------------CCceEEEEccchhhHH
Confidence 5889999999999999999999999 99998887432 2469999999999888
Q ss_pred HH-hccceEEcceeecccc
Q 015686 300 AL-AFNMAVIGGNHIRLDR 317 (402)
Q Consensus 300 Al-~lng~~l~Gr~I~V~~ 317 (402)
|. .|+|..|.||.|+|.-
T Consensus 78 asLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 78 MLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp HHHHHSSEEETTEEEEEEC
T ss_pred HHhhcCCeeecCeEEEecC
Confidence 76 8999999999999854
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.66 E-value=8.6e-05 Score=68.08 Aligned_cols=51 Identities=10% Similarity=-0.048 Sum_probs=44.3
Q ss_pred CCHHHHHHHhccCCCCCCCeEEEEEeecC----CCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 348 VKDEEIYQLFCGLNDLESSVEAVRVIRHP----HMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 348 ~teedL~~~F~~f~~~~G~I~~vrI~~d~----~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
-.+++|+..|..| |.|..|.|+++. .+|.++|++||+|.+.++|.+|+..|
T Consensus 141 e~~~dl~~e~~~~----G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l 195 (222)
T 3dxb_A 141 DLEGEVTEECGKF----GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL 195 (222)
T ss_dssp THHHHHHHHHTTT----SCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc----CCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHh
Confidence 3578999999999 999999998654 34589999999999999999999864
No 381
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.56 E-value=0.00013 Score=58.55 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=46.7
Q ss_pred cCCcceeEecCCC----CCCCH----HHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLP----FDVKD----EEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp----~~~te----edL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
-++.-||+|.-++ .++-. .+|.+.|..| |.|..++|+.|. +||+|.+.++|.+||+|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~----G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~m 68 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASF----GEVILIRFVEDK--------MWVTFLEGSSALNVLSL 68 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT----CCEEEEEECSSS--------EEEEESSHHHHHHGGGG
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhC----CCeEEEEEecCC--------EEEEECChHHHHHHHhc
Confidence 3567788888876 23444 6788999999 999999999873 89999999999999974
No 382
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.28 E-value=0.00014 Score=58.75 Aligned_cols=57 Identities=19% Similarity=0.134 Sum_probs=47.6
Q ss_pred cCCcceeEecCCCCC-----CCH----HHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 333 YDIKKTVFVGNLPFD-----VKD----EEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 333 ~~~~~tLfV~NLp~~-----~te----edL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
-+|.-||+|..++.. +-. .+|.+.|..| |.|..|||+.|+ +||+|.+.++|.+||+|
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~----G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~l 77 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSY----GTIVLVRINQGQ--------MLVTFADSHSALSVLDV 77 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHH----SCCSEEEEETTE--------EEEECSCSHHHHHHHHG
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHC----CCEEEEEEecCc--------EEEEEcChHHHHHHHhc
Confidence 457789999988743 333 5688999999 999999999883 99999999999999984
No 383
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.74 E-value=0.0058 Score=51.23 Aligned_cols=73 Identities=15% Similarity=0.151 Sum_probs=58.9
Q ss_pred CcccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 223 ~~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...+.|.|-+.|+.. ...|..+|++||.|..... + . ...+-.|.|.+..+|++||.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~---~---~-----------------~~NWihI~Y~s~~~A~rAL~ 77 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM---S---N-----------------TGNWMHIRYQSKLQARKALS 77 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE---C---S-----------------SSSEEEEEESSHHHHHHHHT
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc---C---C-----------------CCCeEEEEeCCHHHHHHHHH
Confidence 336789999999985 6778889999999987664 1 1 12489999999999999999
Q ss_pred ccceEEcc-eeeccccCC
Q 015686 303 FNMAVIGG-NHIRLDRAC 319 (402)
Q Consensus 303 lng~~l~G-r~I~V~~a~ 319 (402)
.||..|.| ..|-|....
T Consensus 78 kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 78 KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp TTTCEETTTEECEEEECC
T ss_pred hCCeEecCCEEEEEEECC
Confidence 99999985 667777654
No 384
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.55 E-value=0.0042 Score=50.23 Aligned_cols=52 Identities=19% Similarity=0.337 Sum_probs=44.1
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
.+.++| ++|..+...+|..+|+.||.| .|+|+.+ -.|||.|.+.+.|..||.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD------------------------TsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD------------------------TSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET------------------------TEEEEECSCHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC------------------------CeEEEEecCHHHHHHHHH
Confidence 566777 999999999999999999966 4777432 269999999999999986
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.53 E-value=0.0093 Score=47.66 Aligned_cols=70 Identities=19% Similarity=0.168 Sum_probs=50.9
Q ss_pred cEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-cc
Q 015686 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FN 304 (402)
Q Consensus 226 ~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-ln 304 (402)
.+|-|++||+.+|++++.+.++.++.+.-..+. +...+.. ...-+-|||.|.+.+++..... ++
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv--~G~~s~~-------------~~~~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFF--SNDTSLY-------------PHMYARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEE--ESCCSST-------------TCCCEEEEEEESSSHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEe--CCccCCC-------------CCcceEEEEEeCCHHHHHHHHHHhC
Confidence 468999999999999999999988765443332 2111111 1233689999999998888875 99
Q ss_pred ceEEcc
Q 015686 305 MAVIGG 310 (402)
Q Consensus 305 g~~l~G 310 (402)
|+.|.+
T Consensus 67 g~~F~D 72 (91)
T 1uw4_A 67 GYVFLD 72 (91)
T ss_dssp TCEEEC
T ss_pred CcEEEc
Confidence 998854
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.50 E-value=0.0096 Score=48.59 Aligned_cols=58 Identities=17% Similarity=0.013 Sum_probs=47.6
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCC-CCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHH
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLN-DLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~-~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~ 400 (402)
...+|.|.|||..+.++.|.-+|+.-. .=.|.|..|.... +-|+|+|.++..|+++|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~ 65 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA 65 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc
Confidence 457999999999999999999998721 1138999887753 468999999999999885
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.45 E-value=0.0079 Score=49.20 Aligned_cols=73 Identities=12% Similarity=0.060 Sum_probs=59.4
Q ss_pred ccEEEEeCCCCcC-c----HHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHH
Q 015686 225 LRTIFVGNLPLKV-K----KKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (402)
Q Consensus 225 ~~tVfVgNLP~~v-t----ee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~ 299 (402)
..+|+|.||+..+ . ...++.+|..|+++....+.. |-.-..|.|.+.++|..
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk-----------------------SFRRirv~F~~~~~A~~ 61 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK-----------------------SFKRVRINFSNPLSAAD 61 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET-----------------------TTTEEEEECSSTTHHHH
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC-----------------------cceEEEEEeCChHHHHH
Confidence 5789999999876 2 367889999999987765521 11247899999999999
Q ss_pred HH-hccceEEcceeeccccCCC
Q 015686 300 AL-AFNMAVIGGNHIRLDRACP 320 (402)
Q Consensus 300 Al-~lng~~l~Gr~I~V~~a~~ 320 (402)
|- .||+..++|+.|+|.++.+
T Consensus 62 AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 62 ARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp HHHTSTTSEETTEECEEECCCC
T ss_pred HHHHhccceecCceeEEEecCC
Confidence 97 5999999999999999864
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.42 E-value=0.0058 Score=49.39 Aligned_cols=54 Identities=19% Similarity=0.387 Sum_probs=44.1
Q ss_pred cceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhC
Q 015686 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDVT 402 (402)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~l 402 (402)
...++| ++|.++...||.++|+.| |.| .|+++-| .-|||.|.+++.|..||.++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~f----ggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAF----GNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTT----CSC-CCEEEET-------TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhcc----CCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhc
Confidence 456666 999999999999999999 533 4566655 26999999999999999853
No 389
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.41 E-value=0.006 Score=49.45 Aligned_cols=51 Identities=20% Similarity=0.367 Sum_probs=42.7
Q ss_pred cEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 226 ~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
+.++| ++|..+...+|..+|+.||.| .|+|+.+ --|||.|.+++.|..||.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD------------------------TsAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD------------------------TSAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET------------------------TEEEEEEEEECHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC------------------------CeEEEEecCHHHHHHHHH
Confidence 45666 999999999999999999955 5666432 269999999999999986
No 390
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.85 E-value=0.0065 Score=49.23 Aligned_cols=52 Identities=19% Similarity=0.327 Sum_probs=43.9
Q ss_pred ceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
..++| ++|.++...||.++|+.| | =..|+++-| .-|||.|.+++.|..||.+
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~f----g-gv~I~WidD-------TsAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAF----G-NIQISWIDD-------TSAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTS----E-EEEEEEEET-------TEEEEEEEEECHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhcc----C-CEEEEEEcC-------CeEEEEecCHHHHHHHHHh
Confidence 45666 999999999999999999 6 345677766 2699999999999999885
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.44 E-value=0.043 Score=43.80 Aligned_cols=60 Identities=20% Similarity=0.265 Sum_probs=46.6
Q ss_pred ceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCC--CCceEEEEEecCHHHHHHHHH
Q 015686 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMR--VGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g--~skG~aFV~F~s~e~A~~Al~ 400 (402)
..|.|++||+.+|++++.+.+..+ ..+....++....+. ..-.-|||.|.+.+++....+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~----~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~ 63 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPM----PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRD 63 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSC----CCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCc----ccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 479999999999999999999998 678777776653322 234679999999888766543
No 392
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.17 E-value=0.024 Score=48.27 Aligned_cols=89 Identities=18% Similarity=0.125 Sum_probs=55.4
Q ss_pred cEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccch-hhhhhcccCCCcceEEEEEeechhHHHHHhcc
Q 015686 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGA-ILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (402)
Q Consensus 226 ~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~-~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ln 304 (402)
..|.|=+.|...+ ..+..+|++||.|..-- +........... ...+++..-....+-.|.|.+..+|++||..|
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~----~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~N 82 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDF----EVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLEN 82 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCC----GGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTT
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeec----cccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhC
Confidence 4577778877765 56668999999885411 000000000000 00000110013468999999999999999999
Q ss_pred ceEEcceeeccccCC
Q 015686 305 MAVIGGNHIRLDRAC 319 (402)
Q Consensus 305 g~~l~Gr~I~V~~a~ 319 (402)
|..|.|..|-|.+..
T Consensus 83 G~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYT 97 (132)
T ss_dssp TCEETTEECEEEECC
T ss_pred CeEeCcEEEEEEECC
Confidence 999999988887764
No 393
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.42 E-value=0.019 Score=58.81 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=41.2
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHhc
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~l 303 (402)
.|+|||. .|..+++.+|.++|++||+|.++-+-. + + .-||.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~----~-----~-------------g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYE----S-----F-------------GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEEC----S-----S-------------SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEc----c-----C-------------CeEEEEEeCCHHHHHHHHhc
Confidence 5889997 799999999999999999999887621 1 1 14999999999999988754
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.89 E-value=0.086 Score=42.49 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=47.8
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh-c
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~-l 303 (402)
+..|-|+.||+.+|++++.+.++.+-. +.+.. ......+. ....-.-|||.|.+.+++..-.. +
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~---~d~~~--fv~G~~s~----------~~~~~SRAYI~F~~~edv~~F~~~f 73 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPA---HDYFE--FFAADLSL----------YPHLYSRAYINFRNPDDILLFRDRF 73 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSS---EEECC--CCCCCSSS----------CCSCCCCCEEEESCHHHHHHHHHHS
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCc---cceEE--EeCCccCC----------CCCcceEEEEEeCCHHHHHHHHHHc
Confidence 457999999999999998877776543 33322 11111111 01123579999999999888775 9
Q ss_pred cceEEcc
Q 015686 304 NMAVIGG 310 (402)
Q Consensus 304 ng~~l~G 310 (402)
+|..|.+
T Consensus 74 ~g~~F~D 80 (97)
T 2l08_A 74 DGYIFLD 80 (97)
T ss_dssp TTEEEEC
T ss_pred CCcEEEe
Confidence 9998844
No 395
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=93.32 E-value=0.2 Score=41.40 Aligned_cols=60 Identities=12% Similarity=0.057 Sum_probs=49.3
Q ss_pred CCcceeEecCCCCCCCHHHHHHHhccCC-CCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHH
Q 015686 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLN-DLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLR 399 (402)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~f~-~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al 399 (402)
+..++|-|-|||..++...|+.+.+++. ...|.|..|-+..| -|-|+|.|.+...|-+|.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKas 79 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKML 79 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHH
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHH
Confidence 3468999999999999999999998872 12277899888877 345999999999998875
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=91.59 E-value=0.21 Score=40.16 Aligned_cols=62 Identities=19% Similarity=0.211 Sum_probs=42.5
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCC--CCceEEEEEecCHHHHHHHHH
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMR--VGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g--~skG~aFV~F~s~e~A~~Al~ 400 (402)
.+..|.|+.||+.+|++++.+.+..+ -.+.+..++....+. ..-.-|||.|.+.++...-.+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~----~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~ 71 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPL----PAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRD 71 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCC----SSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHH
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCc----CccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 45789999999999999999888876 234443333222211 122458999999988776543
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=90.34 E-value=0.16 Score=52.01 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=41.1
Q ss_pred cceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHH
Q 015686 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~ 400 (402)
.++|+|. .|..+++.+|.++|+.| |.|..+....+ ..-||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~----g~i~~~~~~~~-----~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQF----GPINNHFFYES-----FGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGG----SCCCCEEEECS-----SSEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhc----CCcceEEEEcc-----CCeEEEEEeCCHHHHHHHHh
Confidence 5899998 79999999999999999 99998866544 23699999999999887764
No 398
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=85.45 E-value=2.1 Score=35.62 Aligned_cols=55 Identities=11% Similarity=0.016 Sum_probs=45.1
Q ss_pred CcceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHH
Q 015686 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~ 400 (402)
..+-|.|-+.|... ...|...|+.| |.|....... ...+-.|.|.++.+|.+||.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~----G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~ 77 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQY----GNILKHVMSN------TGNWMHIRYQSKLQARKALS 77 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTT----SCEEEEEECS------SSSEEEEEESSHHHHHHHHT
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhh----CcEEEeccCC------CCCeEEEEeCCHHHHHHHHH
Confidence 45788898998874 77888899999 9999887621 34589999999999999985
No 399
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=79.80 E-value=2.2 Score=34.68 Aligned_cols=56 Identities=13% Similarity=0.005 Sum_probs=42.8
Q ss_pred cceeEecCCCCCC-C----HHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 336 KKTVFVGNLPFDV-K----DEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 336 ~~tLfV~NLp~~~-t----eedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
.++|+|.||+..+ . ...++.+|..| +.+....+++. -.-..|.|.+.++|.+|--.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~----~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~ 65 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTY----DKDTTFQYFKS------FKRVRINFSNPLSAADARLR 65 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTT----CSSCEEEEETT------TTEEEEECSSTTHHHHHHHT
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhh----CcCcceeecCc------ceEEEEEeCChHHHHHHHHH
Confidence 4789999998765 2 25778999999 77777766654 22468999999999998654
No 400
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=72.51 E-value=6.8 Score=40.28 Aligned_cols=52 Identities=19% Similarity=0.349 Sum_probs=42.3
Q ss_pred ccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 225 ~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
...++|+ +|..+...+|..+|+.||.| .|+++. ...|||.|.+.+.|..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid------------------------dt~a~V~~~~~~~a~~~l~ 491 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID------------------------DTSAFVSLSQPEQVQIAVN 491 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS------------------------SSEEEEECSCHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc------------------------CCeEEEEECCHHHHHHHHH
Confidence 5677777 99999999999999999965 565522 1369999999999999885
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=69.92 E-value=8.8 Score=39.42 Aligned_cols=53 Identities=19% Similarity=0.338 Sum_probs=42.4
Q ss_pred cceeEecCCCCCCCHHHHHHHhccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 015686 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRLPIWLLRDV 401 (402)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~e~A~~Al~~ 401 (402)
...++|+ +|..+...+|.++|+.| |. ..|+++-+ ..|||.|.+++.|..++++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~f----g~-v~V~widd-------t~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAF----GN-IQISWIDD-------TSAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGG----CC-CEEEECSS-------SEEEEECSCHHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhc----CC-EEEEEEcC-------CeEEEEECCHHHHHHHHHH
Confidence 4566666 89999999999999999 64 35555543 3699999999999988875
No 402
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=32.91 E-value=29 Score=29.19 Aligned_cols=60 Identities=12% Similarity=0.185 Sum_probs=39.0
Q ss_pred cceeEecCCCCCCCHHHHHHHhccCCCCCCCeEE-EEEeecC--------CCC-----CCceEEEEEecCHHHHHHHHH
Q 015686 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA-VRVIRHP--------HMR-----VGKGIAYVLFKTRLPIWLLRD 400 (402)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~f~~~~G~I~~-vrI~~d~--------~~g-----~skG~aFV~F~s~e~A~~Al~ 400 (402)
..-|.|-+.|.. ....+-+.|+.| |.|.. +.+.+.. ... ...++-.|+|.++.+|.+||.
T Consensus 7 e~~VtVFGFp~~-~~~~VI~~Fs~~----G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~ 80 (132)
T 3p3d_A 7 ELAILVFGYPET-MANQVIAYFQEF----GTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL 80 (132)
T ss_dssp -CEEEEECCCGG-GHHHHHHHHGGG----SCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT
T ss_pred ceEEEEEecCHH-HHHHHHHHHHhh----ceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH
Confidence 456777788764 466778899999 77755 2111100 000 135678999999999999985
No 403
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=24.41 E-value=1.1e+02 Score=26.69 Aligned_cols=49 Identities=20% Similarity=0.241 Sum_probs=33.1
Q ss_pred ceeEecCCCC-C--------CCHHHHHHHh--ccCCCCCCCeEEEEEeecCCCCCCceEEEEEecCH
Q 015686 337 KTVFVGNLPF-D--------VKDEEIYQLF--CGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (402)
Q Consensus 337 ~tLfV~NLp~-~--------~teedL~~~F--~~f~~~~G~I~~vrI~~d~~~g~skG~aFV~F~s~ 392 (402)
-++.|-|+|. . .....|++.| ..| .. ..|+.+.++. | ..|++.|.|..-
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F----~p-~kv~~l~~~~-G-h~g~aIv~F~~d 72 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGF----NP-TRVRPLWNYL-G-HSGTAIVEFNKD 72 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTC----CC-SEEEEEECSS-B-EEEEEEEECCSS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCC----CC-ceeEecccCC-C-CceeEEEEecCC
Confidence 4567777776 2 3457899977 899 33 3455555533 3 789999999763
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=21.21 E-value=3e+02 Score=21.54 Aligned_cols=54 Identities=17% Similarity=0.097 Sum_probs=43.1
Q ss_pred cccEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhcccCCCcceEEEEEeechhHHHHHh
Q 015686 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (402)
Q Consensus 224 ~~~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~~~~~~~~~~rkg~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~ 302 (402)
.++-|-|-|+|..+-..++.-.....|---.+..+ -|.|.|.|.+.+....|+.
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi-------------------------dgqamirfqnsdeqrlaiq 64 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------------------------DGQAMIRFQNSDEQRLAIQ 64 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------------------------SSCEEEEESSHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------------------------cCeeEEEecCChHHHHHHH
Confidence 36788999999999999988888888844444441 1789999999999888884
No 405
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=20.93 E-value=47 Score=31.02 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=26.4
Q ss_pred cEEEEeCCCCcCcHHHHHHHhhhcCCeeEEEEee
Q 015686 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRS 259 (402)
Q Consensus 226 ~tVfVgNLP~~vtee~L~~~F~~~G~I~~vri~~ 259 (402)
..+.|+|||+.++..-|..++.....+..+.++.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 3578999999999999999998655565555443
Done!