Query 015687
Match_columns 402
No_of_seqs 339 out of 2056
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 08:38:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015687.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015687hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5064 SRP1 Karyopherin (impo 100.0 1.3E-77 2.9E-82 504.6 27.9 392 7-400 5-401 (526)
2 KOG0166 Karyopherin (importin) 100.0 1.9E-73 4.1E-78 515.7 37.5 390 9-400 5-396 (514)
3 KOG0166 Karyopherin (importin) 100.0 1.1E-45 2.4E-50 335.3 29.3 327 71-401 109-440 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 2E-45 4.3E-50 310.2 18.7 326 71-402 114-448 (526)
5 PLN03200 cellulose synthase-in 100.0 1.5E-37 3.2E-42 321.3 35.9 326 71-400 189-562 (2102)
6 PLN03200 cellulose synthase-in 100.0 9.1E-35 2E-39 300.8 35.9 325 71-400 404-767 (2102)
7 KOG4224 Armadillo repeat prote 100.0 2.2E-28 4.7E-33 209.0 24.6 323 69-400 165-496 (550)
8 KOG4224 Armadillo repeat prote 100.0 3.8E-28 8.2E-33 207.6 18.4 321 69-398 124-447 (550)
9 PF05804 KAP: Kinesin-associat 99.9 3.3E-22 7.3E-27 192.5 33.0 323 71-402 290-654 (708)
10 PF05804 KAP: Kinesin-associat 99.9 3.1E-20 6.7E-25 179.1 32.1 316 74-400 253-610 (708)
11 KOG0168 Putative ubiquitin fus 99.8 3E-17 6.5E-22 154.7 26.5 261 72-336 168-437 (1051)
12 KOG4199 Uncharacterized conser 99.8 1.1E-16 2.3E-21 136.5 25.6 309 81-396 117-443 (461)
13 KOG1048 Neural adherens juncti 99.8 5E-17 1.1E-21 153.6 23.6 320 72-397 234-684 (717)
14 PF10508 Proteasom_PSMB: Prote 99.7 3.5E-15 7.7E-20 142.6 29.6 316 74-400 41-369 (503)
15 PRK09687 putative lyase; Provi 99.7 1.3E-15 2.8E-20 133.9 24.2 254 72-394 24-279 (280)
16 KOG4199 Uncharacterized conser 99.7 1.6E-14 3.5E-19 123.3 27.6 281 113-400 103-406 (461)
17 KOG2122 Beta-catenin-binding p 99.7 5.8E-16 1.3E-20 152.9 21.3 327 69-398 233-602 (2195)
18 PF10508 Proteasom_PSMB: Prote 99.7 2.6E-14 5.6E-19 136.7 31.4 320 72-398 78-421 (503)
19 KOG1048 Neural adherens juncti 99.7 7E-16 1.5E-20 145.9 19.4 282 115-398 234-596 (717)
20 KOG2122 Beta-catenin-binding p 99.7 2.3E-15 4.9E-20 148.8 21.2 267 90-359 317-605 (2195)
21 PRK09687 putative lyase; Provi 99.7 7.8E-15 1.7E-19 129.0 21.2 227 115-397 24-250 (280)
22 KOG4500 Rho/Rac GTPase guanine 99.7 8.9E-15 1.9E-19 128.8 17.8 309 84-397 55-390 (604)
23 KOG2023 Nuclear transport rece 99.7 3.1E-15 6.7E-20 138.0 15.6 318 71-398 128-506 (885)
24 cd00020 ARM Armadillo/beta-cat 99.6 1.1E-14 2.4E-19 112.5 14.9 118 279-397 3-120 (120)
25 PF04826 Arm_2: Armadillo-like 99.6 4.2E-14 9E-19 121.6 19.4 197 110-313 8-206 (254)
26 KOG1222 Kinesin associated pro 99.6 5.2E-13 1.1E-17 119.4 25.3 322 72-402 305-668 (791)
27 PF04826 Arm_2: Armadillo-like 99.6 1.6E-13 3.4E-18 118.0 19.6 227 154-388 9-253 (254)
28 cd00020 ARM Armadillo/beta-cat 99.6 3.2E-14 7E-19 109.9 13.1 119 109-229 2-120 (120)
29 PRK13800 putative oxidoreducta 99.6 1.2E-12 2.5E-17 134.1 27.8 259 72-394 622-896 (897)
30 KOG2171 Karyopherin (importin) 99.6 4.6E-12 1E-16 124.7 28.3 321 72-398 119-505 (1075)
31 KOG4500 Rho/Rac GTPase guanine 99.5 5.7E-12 1.2E-16 111.3 23.9 323 71-397 87-431 (604)
32 PF01749 IBB: Importin beta bi 99.5 2E-15 4.2E-20 109.5 1.8 88 6-93 3-96 (97)
33 cd00256 VATPase_H VATPase_H, r 99.5 1.5E-11 3.2E-16 112.7 26.9 320 73-397 55-425 (429)
34 KOG2171 Karyopherin (importin) 99.5 7.3E-12 1.6E-16 123.3 25.6 318 74-400 82-464 (1075)
35 KOG1293 Proteins containing ar 99.4 8.8E-11 1.9E-15 109.2 25.5 321 75-399 13-535 (678)
36 KOG2023 Nuclear transport rece 99.4 5.6E-12 1.2E-16 116.8 16.8 273 114-397 128-463 (885)
37 cd00256 VATPase_H VATPase_H, r 99.4 6.2E-11 1.3E-15 108.6 23.5 280 72-355 102-425 (429)
38 KOG1222 Kinesin associated pro 99.4 2.4E-10 5.3E-15 102.6 25.1 302 84-396 276-620 (791)
39 PTZ00429 beta-adaptin; Provisi 99.4 6.4E-10 1.4E-14 109.7 30.4 294 71-397 32-326 (746)
40 PF01602 Adaptin_N: Adaptin N 99.4 4.9E-11 1.1E-15 116.6 21.6 256 71-356 42-297 (526)
41 KOG1241 Karyopherin (importin) 99.3 6.2E-11 1.3E-15 111.7 17.7 316 74-398 132-478 (859)
42 PF01602 Adaptin_N: Adaptin N 99.3 3.9E-10 8.5E-15 110.3 23.8 288 75-398 8-297 (526)
43 PRK13800 putative oxidoreducta 99.3 2.4E-10 5.2E-15 117.3 23.0 219 112-395 619-865 (897)
44 PTZ00429 beta-adaptin; Provisi 99.3 3.7E-09 8.1E-14 104.3 30.0 300 72-398 69-398 (746)
45 KOG2759 Vacuolar H+-ATPase V1 99.3 2.9E-10 6.3E-15 100.7 19.1 309 73-398 116-439 (442)
46 KOG0168 Putative ubiquitin fus 99.3 6.7E-10 1.5E-14 105.9 20.4 260 116-379 169-437 (1051)
47 KOG1293 Proteins containing ar 99.2 4.5E-09 9.7E-14 98.1 24.0 126 240-366 418-544 (678)
48 KOG2160 Armadillo/beta-catenin 99.2 6E-10 1.3E-14 97.5 16.8 183 129-312 97-282 (342)
49 KOG1241 Karyopherin (importin) 99.2 8.6E-10 1.9E-14 104.2 18.2 321 73-400 174-533 (859)
50 KOG2160 Armadillo/beta-catenin 99.2 1.2E-09 2.6E-14 95.6 17.5 187 81-270 93-282 (342)
51 PF03224 V-ATPase_H_N: V-ATPas 99.2 1.7E-09 3.7E-14 97.7 16.7 230 158-390 56-307 (312)
52 KOG1517 Guanine nucleotide bin 99.2 2.1E-09 4.5E-14 104.8 17.6 274 83-367 448-744 (1387)
53 KOG0946 ER-Golgi vesicle-tethe 99.1 2.2E-07 4.8E-12 88.6 28.2 321 71-397 22-399 (970)
54 COG5215 KAP95 Karyopherin (imp 99.1 3.9E-08 8.4E-13 90.5 20.3 315 71-397 321-668 (858)
55 COG5215 KAP95 Karyopherin (imp 99.0 1.8E-08 3.8E-13 92.6 17.8 300 84-398 147-480 (858)
56 KOG0946 ER-Golgi vesicle-tethe 99.0 1.6E-07 3.5E-12 89.5 24.1 280 115-399 23-348 (970)
57 PF03224 V-ATPase_H_N: V-ATPas 99.0 6.8E-09 1.5E-13 93.8 14.6 222 74-300 61-302 (312)
58 KOG0213 Splicing factor 3b, su 99.0 5E-08 1.1E-12 92.3 18.1 318 73-399 718-1067(1172)
59 KOG1517 Guanine nucleotide bin 98.9 8.2E-08 1.8E-12 94.0 17.2 248 71-322 472-742 (1387)
60 KOG3678 SARM protein (with ste 98.9 1.6E-07 3.6E-12 84.5 17.0 268 71-355 180-452 (832)
61 TIGR02270 conserved hypothetic 98.9 1.5E-06 3.3E-11 80.4 23.3 241 72-397 55-296 (410)
62 KOG1059 Vesicle coat complex A 98.8 5.2E-06 1.1E-10 78.8 26.5 217 74-313 147-366 (877)
63 KOG3678 SARM protein (with ste 98.8 2.9E-07 6.2E-12 83.0 16.8 272 107-395 173-450 (832)
64 COG5369 Uncharacterized conser 98.8 4.4E-08 9.4E-13 89.5 10.4 280 109-395 426-739 (743)
65 KOG1242 Protein containing ada 98.8 3.7E-06 7.9E-11 78.9 22.3 300 73-397 136-444 (569)
66 KOG1824 TATA-binding protein-i 98.7 5.5E-06 1.2E-10 80.9 23.3 320 75-402 9-407 (1233)
67 KOG2973 Uncharacterized conser 98.7 3.4E-06 7.4E-11 72.3 19.2 268 116-396 5-314 (353)
68 KOG2759 Vacuolar H+-ATPase V1 98.7 2.5E-06 5.4E-11 76.2 19.0 264 75-356 160-439 (442)
69 KOG1061 Vesicle coat complex A 98.7 1E-06 2.2E-11 84.4 16.7 265 115-397 122-415 (734)
70 COG5181 HSH155 U2 snRNP splice 98.7 3.5E-07 7.6E-12 85.0 12.8 237 157-399 604-872 (975)
71 KOG4413 26S proteasome regulat 98.7 3.9E-05 8.4E-10 66.6 24.2 322 73-397 84-439 (524)
72 KOG2973 Uncharacterized conser 98.7 1.3E-05 2.8E-10 68.8 21.1 272 73-356 5-316 (353)
73 KOG1789 Endocytosis protein RM 98.7 1.4E-05 3E-10 79.0 23.9 286 86-379 1740-2141(2235)
74 COG1413 FOG: HEAT repeat [Ener 98.6 1.1E-05 2.4E-10 74.1 22.0 188 72-313 44-243 (335)
75 PF00514 Arm: Armadillo/beta-c 98.6 9.3E-08 2E-12 57.7 5.2 41 357-397 1-41 (41)
76 KOG0212 Uncharacterized conser 98.6 5.4E-06 1.2E-10 76.6 17.9 318 72-401 85-410 (675)
77 KOG1242 Protein containing ada 98.6 3.7E-05 8E-10 72.3 23.6 234 115-363 97-333 (569)
78 KOG1062 Vesicle coat complex A 98.6 2.7E-05 5.8E-10 75.1 22.9 101 75-189 111-211 (866)
79 KOG0213 Splicing factor 3b, su 98.6 8E-06 1.7E-10 77.8 19.1 261 74-356 802-1066(1172)
80 COG5181 HSH155 U2 snRNP splice 98.6 4.8E-06 1E-10 77.7 17.3 264 73-356 606-871 (975)
81 KOG1062 Vesicle coat complex A 98.6 2.2E-05 4.8E-10 75.6 22.2 276 73-380 144-453 (866)
82 PF00514 Arm: Armadillo/beta-c 98.5 2E-07 4.4E-12 56.2 5.1 41 314-355 1-41 (41)
83 KOG1061 Vesicle coat complex A 98.5 2.4E-06 5.3E-11 81.9 14.8 291 73-394 123-450 (734)
84 KOG1059 Vesicle coat complex A 98.5 4.9E-05 1.1E-09 72.4 22.4 256 115-400 145-404 (877)
85 PF14664 RICTOR_N: Rapamycin-i 98.5 1.4E-05 3E-10 73.3 18.0 313 74-396 28-363 (371)
86 PF13513 HEAT_EZ: HEAT-like re 98.5 3.5E-07 7.5E-12 59.3 5.4 55 340-395 1-55 (55)
87 COG5231 VMA13 Vacuolar H+-ATPa 98.5 2.1E-05 4.5E-10 67.9 17.3 236 161-398 153-429 (432)
88 PF10165 Ric8: Guanine nucleot 98.5 5.6E-05 1.2E-09 71.5 21.9 259 105-364 13-346 (446)
89 COG1413 FOG: HEAT repeat [Ener 98.4 3.6E-05 7.8E-10 70.7 20.0 188 114-355 43-242 (335)
90 KOG1824 TATA-binding protein-i 98.4 5.5E-05 1.2E-09 74.2 20.8 247 128-399 832-1097(1233)
91 KOG2259 Uncharacterized conser 98.4 1.4E-05 3E-10 75.3 16.2 219 158-395 199-473 (823)
92 KOG4413 26S proteasome regulat 98.4 0.00013 2.8E-09 63.5 20.8 318 71-395 128-482 (524)
93 TIGR02270 conserved hypothetic 98.4 7.4E-05 1.6E-09 69.4 20.8 209 73-355 88-296 (410)
94 PF05536 Neurochondrin: Neuroc 98.4 3.2E-05 6.9E-10 74.8 18.5 235 72-312 6-261 (543)
95 KOG4646 Uncharacterized conser 98.4 8.1E-06 1.8E-10 61.3 10.9 125 70-198 15-140 (173)
96 KOG4646 Uncharacterized conser 98.4 4.3E-06 9.2E-11 62.7 9.3 115 114-231 16-130 (173)
97 COG5231 VMA13 Vacuolar H+-ATPa 98.4 3E-05 6.4E-10 66.9 15.4 230 121-354 156-427 (432)
98 COG5369 Uncharacterized conser 98.3 7.3E-06 1.6E-10 75.4 12.3 201 175-377 407-617 (743)
99 KOG0212 Uncharacterized conser 98.3 1.8E-05 4E-10 73.2 13.6 275 111-395 81-363 (675)
100 PF12348 CLASP_N: CLASP N term 98.2 2.1E-05 4.5E-10 68.0 12.7 187 81-275 17-211 (228)
101 PF13646 HEAT_2: HEAT repeats; 98.2 4E-06 8.8E-11 60.4 6.9 87 116-225 1-88 (88)
102 PF05536 Neurochondrin: Neuroc 98.2 0.00024 5.2E-09 68.8 20.4 236 158-396 6-260 (543)
103 KOG0567 HEAT repeat-containing 98.2 0.00063 1.4E-08 57.5 19.9 243 82-395 16-278 (289)
104 KOG2062 26S proteasome regulat 98.2 7.1E-05 1.5E-09 71.6 15.7 239 115-399 414-655 (929)
105 KOG1077 Vesicle coat complex A 98.2 0.001 2.3E-08 63.6 23.0 296 73-396 113-432 (938)
106 PF13646 HEAT_2: HEAT repeats; 98.2 5.5E-06 1.2E-10 59.6 6.5 87 243-351 1-88 (88)
107 PF12348 CLASP_N: CLASP N term 98.2 2.2E-05 4.7E-10 67.8 11.3 191 167-364 17-215 (228)
108 PF13513 HEAT_EZ: HEAT-like re 98.2 4.2E-06 9.1E-11 54.2 4.9 55 297-353 1-55 (55)
109 KOG1240 Protein kinase contain 98.2 8.4E-05 1.8E-09 74.8 15.8 267 73-355 424-725 (1431)
110 PF14664 RICTOR_N: Rapamycin-i 98.1 0.00051 1.1E-08 63.1 19.9 233 159-397 27-269 (371)
111 KOG1060 Vesicle coat complex A 98.1 0.00086 1.9E-08 64.9 20.4 283 74-395 38-348 (968)
112 COG5240 SEC21 Vesicle coat com 98.1 0.00029 6.4E-09 65.7 16.2 263 116-396 266-554 (898)
113 KOG1991 Nuclear transport rece 98.0 0.0013 2.8E-08 65.4 21.0 280 114-400 410-714 (1010)
114 KOG1789 Endocytosis protein RM 98.0 0.0013 2.7E-08 65.8 20.7 262 69-337 1769-2142(2235)
115 KOG1060 Vesicle coat complex A 98.0 0.0032 7E-08 61.1 22.8 251 121-397 150-458 (968)
116 KOG2274 Predicted importin 9 [ 98.0 0.0022 4.9E-08 63.1 21.8 306 82-396 461-779 (1005)
117 KOG0915 Uncharacterized conser 98.0 0.00029 6.3E-09 72.7 16.3 311 74-399 821-1162(1702)
118 PF12460 MMS19_C: RNAPII trans 98.0 0.0084 1.8E-07 56.7 25.5 314 74-399 2-396 (415)
119 KOG2259 Uncharacterized conser 98.0 7.1E-05 1.5E-09 70.7 11.1 263 76-364 203-484 (823)
120 KOG0211 Protein phosphatase 2A 98.0 0.00059 1.3E-08 67.7 17.7 306 73-396 357-663 (759)
121 smart00185 ARM Armadillo/beta- 97.9 2.8E-05 6.2E-10 46.7 5.4 40 358-397 2-41 (41)
122 KOG2734 Uncharacterized conser 97.9 0.0052 1.1E-07 55.9 21.6 228 105-335 116-371 (536)
123 COG5096 Vesicle coat complex, 97.9 0.00067 1.4E-08 66.7 17.2 163 213-397 33-195 (757)
124 COG5096 Vesicle coat complex, 97.9 0.0028 6E-08 62.5 20.7 168 80-271 28-196 (757)
125 KOG2734 Uncharacterized conser 97.9 0.0015 3.3E-08 59.1 17.0 223 69-292 123-370 (536)
126 KOG1078 Vesicle coat complex C 97.9 0.0012 2.6E-08 64.0 17.2 256 115-396 246-531 (865)
127 KOG1240 Protein kinase contain 97.8 0.0024 5.2E-08 64.8 19.2 232 72-313 463-726 (1431)
128 KOG1077 Vesicle coat complex A 97.8 0.0089 1.9E-07 57.5 22.0 303 72-399 75-400 (938)
129 smart00185 ARM Armadillo/beta- 97.8 4.7E-05 1E-09 45.7 4.8 39 147-185 2-40 (41)
130 KOG1943 Beta-tubulin folding c 97.8 0.025 5.5E-07 57.1 25.7 310 72-397 342-705 (1133)
131 PF12755 Vac14_Fab1_bd: Vacuol 97.8 0.00027 5.8E-09 51.4 9.2 92 300-395 3-94 (97)
132 PF09759 Atx10homo_assoc: Spin 97.8 0.00023 4.9E-09 51.7 8.5 68 299-366 2-70 (102)
133 PF09759 Atx10homo_assoc: Spin 97.8 0.00013 2.7E-09 53.0 7.0 67 131-197 2-70 (102)
134 PF08569 Mo25: Mo25-like; Int 97.7 0.002 4.2E-08 58.3 15.9 241 152-394 71-329 (335)
135 KOG1248 Uncharacterized conser 97.7 0.0059 1.3E-07 62.1 20.5 242 120-366 659-910 (1176)
136 KOG1943 Beta-tubulin folding c 97.7 0.0056 1.2E-07 61.6 19.8 261 114-398 341-612 (1133)
137 KOG2274 Predicted importin 9 [ 97.7 0.0056 1.2E-07 60.4 19.0 225 167-399 460-691 (1005)
138 KOG4535 HEAT and armadillo rep 97.7 0.00025 5.3E-09 64.8 9.2 307 74-395 256-601 (728)
139 PF10165 Ric8: Guanine nucleot 97.6 0.0073 1.6E-07 57.4 18.8 232 81-315 42-340 (446)
140 PF08569 Mo25: Mo25-like; Int 97.6 0.0048 1E-07 55.8 16.5 204 193-399 70-285 (335)
141 PF05004 IFRD: Interferon-rela 97.6 0.0076 1.6E-07 54.2 17.6 191 72-269 44-256 (309)
142 KOG1967 DNA repair/transcripti 97.6 0.0006 1.3E-08 67.1 11.0 188 158-351 816-1020(1030)
143 KOG0915 Uncharacterized conser 97.6 0.0068 1.5E-07 63.1 18.1 223 115-342 957-1188(1702)
144 KOG0567 HEAT repeat-containing 97.6 0.021 4.5E-07 48.7 18.0 224 73-355 38-280 (289)
145 PF12717 Cnd1: non-SMC mitotic 97.5 0.0088 1.9E-07 49.3 15.6 93 213-313 1-93 (178)
146 COG5116 RPN2 26S proteasome re 97.5 0.0029 6.3E-08 59.3 13.5 130 245-399 520-652 (926)
147 KOG0211 Protein phosphatase 2A 97.5 0.0044 9.5E-08 61.7 15.5 271 113-396 236-507 (759)
148 KOG1248 Uncharacterized conser 97.4 0.03 6.5E-07 57.2 20.7 220 168-396 665-897 (1176)
149 KOG4151 Myosin assembly protei 97.4 0.0061 1.3E-07 59.5 15.5 202 191-398 496-700 (748)
150 KOG4535 HEAT and armadillo rep 97.4 0.0037 7.9E-08 57.5 12.7 264 130-400 270-562 (728)
151 PF05918 API5: Apoptosis inhib 97.4 0.056 1.2E-06 51.9 21.0 176 117-312 26-207 (556)
152 KOG4653 Uncharacterized conser 97.3 0.0093 2E-07 58.7 15.3 224 161-395 731-962 (982)
153 KOG1058 Vesicle coat complex C 97.3 0.042 9.1E-07 53.5 19.3 218 159-398 245-464 (948)
154 KOG4151 Myosin assembly protei 97.3 0.013 2.8E-07 57.4 16.1 248 142-396 489-740 (748)
155 COG5240 SEC21 Vesicle coat com 97.3 0.02 4.3E-07 54.0 16.4 67 78-149 271-337 (898)
156 PF05004 IFRD: Interferon-rela 97.3 0.029 6.4E-07 50.5 17.3 190 204-398 48-258 (309)
157 PF12717 Cnd1: non-SMC mitotic 97.3 0.016 3.6E-07 47.6 14.6 92 129-231 2-94 (178)
158 KOG2956 CLIP-associating prote 97.3 0.019 4.2E-07 52.7 15.8 175 171-355 301-477 (516)
159 PF05918 API5: Apoptosis inhib 97.3 0.092 2E-06 50.5 21.1 290 72-398 24-346 (556)
160 PF12460 MMS19_C: RNAPII trans 97.3 0.018 4E-07 54.4 16.6 207 158-375 190-413 (415)
161 PF12755 Vac14_Fab1_bd: Vacuol 97.3 0.0016 3.4E-08 47.3 7.3 91 217-309 3-93 (97)
162 PF11841 DUF3361: Domain of un 97.3 0.017 3.7E-07 45.7 13.4 126 191-317 3-136 (160)
163 KOG1058 Vesicle coat complex C 97.3 0.11 2.3E-06 50.9 21.1 210 157-397 134-346 (948)
164 KOG0414 Chromosome condensatio 97.2 0.005 1.1E-07 62.5 12.4 163 221-399 898-1066(1251)
165 KOG3665 ZYG-1-like serine/thre 97.2 0.059 1.3E-06 54.0 19.8 199 180-396 494-696 (699)
166 PF11864 DUF3384: Domain of un 97.2 0.25 5.5E-06 47.4 25.0 287 85-396 4-329 (464)
167 PF13764 E3_UbLigase_R4: E3 ub 97.1 0.16 3.5E-06 51.3 21.8 217 156-376 116-384 (802)
168 KOG2062 26S proteasome regulat 97.1 0.034 7.4E-07 54.0 15.7 158 157-337 519-677 (929)
169 PF11841 DUF3361: Domain of un 97.0 0.017 3.6E-07 45.7 11.4 125 107-233 4-135 (160)
170 KOG1078 Vesicle coat complex C 97.0 0.036 7.8E-07 54.2 15.7 259 74-354 248-531 (865)
171 PF11698 V-ATPase_H_C: V-ATPas 97.0 0.0014 3E-08 49.0 5.0 73 325-397 43-115 (119)
172 KOG3036 Protein involved in ce 97.0 0.04 8.7E-07 46.4 13.6 144 85-230 93-248 (293)
173 PF12719 Cnd3: Nuclear condens 97.0 0.062 1.4E-06 48.3 16.2 170 157-337 26-209 (298)
174 COG5656 SXM1 Importin, protein 96.9 0.2 4.4E-06 49.0 19.5 278 113-399 407-713 (970)
175 KOG0414 Chromosome condensatio 96.9 0.014 3.1E-07 59.4 12.4 159 115-295 920-1083(1251)
176 PF02985 HEAT: HEAT repeat; I 96.9 0.0015 3.2E-08 36.3 3.2 30 369-398 1-30 (31)
177 KOG4653 Uncharacterized conser 96.9 0.045 9.9E-07 54.1 15.0 225 118-353 731-962 (982)
178 KOG3036 Protein involved in ce 96.8 0.24 5.1E-06 42.0 17.0 177 218-398 97-292 (293)
179 PF11698 V-ATPase_H_C: V-ATPas 96.8 0.0027 5.8E-08 47.5 5.2 73 240-312 42-115 (119)
180 KOG2956 CLIP-associating prote 96.8 0.052 1.1E-06 50.1 14.1 184 73-269 288-476 (516)
181 PF04078 Rcd1: Cell differenti 96.8 0.012 2.6E-07 50.3 9.4 142 88-231 67-220 (262)
182 KOG1967 DNA repair/transcripti 96.8 0.011 2.5E-07 58.5 10.3 153 239-395 865-1022(1030)
183 KOG1991 Nuclear transport rece 96.7 0.29 6.4E-06 49.4 19.2 264 84-355 431-711 (1010)
184 KOG1020 Sister chromatid cohes 96.7 0.039 8.5E-07 57.8 13.5 166 217-396 794-959 (1692)
185 PF02985 HEAT: HEAT repeat; I 96.6 0.0024 5.2E-08 35.5 2.9 29 158-186 1-29 (31)
186 PF14668 RICTOR_V: Rapamycin-i 96.6 0.02 4.3E-07 38.9 7.8 66 300-367 4-69 (73)
187 PF04078 Rcd1: Cell differenti 96.6 0.089 1.9E-06 45.1 13.2 145 253-398 7-169 (262)
188 PF08045 CDC14: Cell division 96.6 0.19 4E-06 43.5 15.1 103 129-231 105-209 (257)
189 PF06371 Drf_GBD: Diaphanous G 96.6 0.013 2.9E-07 48.7 8.3 111 72-185 67-186 (187)
190 PF06025 DUF913: Domain of Unk 96.5 0.15 3.2E-06 47.4 15.2 144 104-248 95-251 (379)
191 PF12719 Cnd3: Nuclear condens 96.5 0.016 3.5E-07 52.1 8.8 112 283-400 26-146 (298)
192 PRK14707 hypothetical protein; 96.5 0.92 2E-05 49.9 22.0 315 73-393 165-483 (2710)
193 PF11701 UNC45-central: Myosin 96.4 0.015 3.2E-07 46.7 7.4 148 200-352 4-156 (157)
194 PF07814 WAPL: Wings apart-lik 96.4 0.18 3.9E-06 46.6 15.1 275 116-400 23-358 (361)
195 COG5098 Chromosome condensatio 96.3 0.13 2.7E-06 50.0 13.9 174 79-274 861-1041(1128)
196 PF11865 DUF3385: Domain of un 96.3 0.041 8.9E-07 44.3 9.4 146 115-269 11-156 (160)
197 PF01603 B56: Protein phosphat 96.1 0.73 1.6E-05 43.4 18.0 259 91-363 110-378 (409)
198 KOG1820 Microtubule-associated 96.1 0.19 4.1E-06 50.9 14.4 197 160-365 256-454 (815)
199 KOG1243 Protein kinase [Genera 95.9 0.23 5E-06 48.3 13.6 258 74-355 257-515 (690)
200 KOG2137 Protein kinase [Signal 95.9 0.58 1.3E-05 45.9 16.2 137 236-381 384-521 (700)
201 PF14500 MMS19_N: Dos2-interac 95.9 1.1 2.4E-05 39.3 17.7 218 119-355 4-237 (262)
202 PF08506 Cse1: Cse1; InterPro 95.9 0.29 6.4E-06 45.2 13.9 143 243-392 212-370 (370)
203 KOG1566 Conserved protein Mo25 95.9 1.1 2.5E-05 39.4 16.9 225 151-378 73-310 (342)
204 PF13764 E3_UbLigase_R4: E3 ub 95.9 1.4 3.1E-05 44.8 19.5 238 112-355 115-406 (802)
205 PF06025 DUF913: Domain of Unk 95.9 0.26 5.7E-06 45.7 13.5 194 176-381 3-209 (379)
206 PF01603 B56: Protein phosphat 95.8 0.31 6.8E-06 45.9 14.2 233 73-319 135-377 (409)
207 KOG1820 Microtubule-associated 95.8 0.41 9E-06 48.5 15.6 185 74-269 256-442 (815)
208 PF08045 CDC14: Cell division 95.8 0.15 3.3E-06 44.0 10.9 101 86-187 106-208 (257)
209 PF11864 DUF3384: Domain of un 95.8 2 4.2E-05 41.4 21.1 249 84-354 42-329 (464)
210 PRK14707 hypothetical protein; 95.8 3.6 7.7E-05 45.8 22.3 308 72-384 206-516 (2710)
211 KOG1566 Conserved protein Mo25 95.7 1.3 2.9E-05 39.0 17.7 201 193-397 73-286 (342)
212 PF11701 UNC45-central: Myosin 95.7 0.12 2.7E-06 41.4 9.4 144 244-394 6-156 (157)
213 KOG2025 Chromosome condensatio 95.6 0.28 6E-06 47.9 12.7 128 216-351 62-189 (892)
214 COG5116 RPN2 26S proteasome re 95.5 0.25 5.4E-06 46.9 11.7 122 241-381 551-675 (926)
215 KOG1020 Sister chromatid cohes 95.5 4.4 9.6E-05 43.5 25.4 81 298-382 1187-1278(1692)
216 KOG1243 Protein kinase [Genera 95.4 0.53 1.2E-05 45.9 14.0 187 196-395 327-513 (690)
217 PF14668 RICTOR_V: Rapamycin-i 95.3 0.064 1.4E-06 36.4 5.5 66 132-199 4-70 (73)
218 PF04063 DUF383: Domain of unk 95.3 0.19 4.1E-06 41.6 9.3 81 255-337 72-159 (192)
219 KOG2611 Neurochondrin/leucine- 95.2 2.7 5.8E-05 39.5 17.6 229 74-312 14-274 (698)
220 KOG2025 Chromosome condensatio 95.2 2.9 6.4E-05 41.1 18.0 106 113-225 84-189 (892)
221 PF01347 Vitellogenin_N: Lipop 95.1 1.1 2.4E-05 44.9 16.4 196 115-345 396-612 (618)
222 PF04063 DUF383: Domain of unk 95.1 0.4 8.6E-06 39.8 10.7 124 252-379 6-158 (192)
223 KOG2032 Uncharacterized conser 95.1 0.47 1E-05 44.3 12.1 163 221-388 238-407 (533)
224 KOG2032 Uncharacterized conser 94.9 3.4 7.3E-05 38.9 19.9 265 112-397 252-531 (533)
225 PF12530 DUF3730: Protein of u 94.9 2.3 5E-05 36.7 19.9 202 116-337 2-215 (234)
226 COG5098 Chromosome condensatio 94.9 0.17 3.6E-06 49.2 8.8 143 241-399 892-1039(1128)
227 KOG1993 Nuclear transport rece 94.8 5 0.00011 40.1 21.2 315 73-399 528-866 (978)
228 KOG2999 Regulator of Rac1, req 94.8 1.9 4.1E-05 41.1 15.0 157 73-233 85-246 (713)
229 PF13251 DUF4042: Domain of un 94.7 0.72 1.6E-05 37.8 11.2 113 159-271 42-175 (182)
230 PF10363 DUF2435: Protein of u 94.6 0.28 6.1E-06 35.2 7.5 83 201-293 5-87 (92)
231 PF12530 DUF3730: Protein of u 94.6 2.8 6E-05 36.2 17.4 203 159-383 2-218 (234)
232 PF10363 DUF2435: Protein of u 94.5 0.19 4.1E-06 36.1 6.5 72 285-359 5-76 (92)
233 KOG1949 Uncharacterized conser 94.5 1.8 3.9E-05 42.5 14.6 186 117-311 177-369 (1005)
234 PF14500 MMS19_N: Dos2-interac 94.4 3.2 7E-05 36.4 18.7 221 160-397 2-237 (262)
235 KOG3665 ZYG-1-like serine/thre 94.4 0.82 1.8E-05 46.1 13.0 196 138-351 494-693 (699)
236 KOG2611 Neurochondrin/leucine- 94.3 4.8 0.0001 37.8 16.7 191 117-313 14-226 (698)
237 PF08167 RIX1: rRNA processing 94.2 0.49 1.1E-05 38.3 9.2 111 283-397 25-143 (165)
238 COG5218 YCG1 Chromosome conden 94.2 0.66 1.4E-05 44.4 10.9 108 236-349 86-193 (885)
239 smart00638 LPD_N Lipoprotein N 94.2 2 4.4E-05 42.7 15.4 135 241-395 393-543 (574)
240 PF06371 Drf_GBD: Diaphanous G 94.1 0.56 1.2E-05 38.8 9.8 83 270-354 94-186 (187)
241 PF14225 MOR2-PAG1_C: Cell mor 93.9 4.2 9E-05 35.7 15.7 216 77-312 13-254 (262)
242 PF13251 DUF4042: Domain of un 93.6 2.9 6.2E-05 34.4 12.5 129 245-399 44-176 (182)
243 KOG2933 Uncharacterized conser 93.6 0.45 9.8E-06 41.8 8.1 145 159-312 90-234 (334)
244 PF11865 DUF3385: Domain of un 93.5 1.1 2.4E-05 36.0 9.9 146 240-397 9-157 (160)
245 KOG2137 Protein kinase [Signal 93.5 1.1 2.3E-05 44.1 11.2 134 156-296 388-521 (700)
246 PF01347 Vitellogenin_N: Lipop 93.4 0.56 1.2E-05 47.1 10.0 152 220-394 414-586 (618)
247 PF07814 WAPL: Wings apart-lik 93.4 3.7 8E-05 38.1 14.6 228 159-399 23-301 (361)
248 KOG2999 Regulator of Rac1, req 93.3 4 8.7E-05 39.0 14.2 155 159-315 85-245 (713)
249 PLN03076 ARF guanine nucleotid 93.2 13 0.00028 41.9 19.9 276 82-366 1148-1505(1780)
250 KOG1822 Uncharacterized conser 93.2 13 0.00028 41.3 19.1 230 157-395 876-1125(2067)
251 COG5218 YCG1 Chromosome conden 92.9 1.8 3.8E-05 41.7 11.4 100 283-391 91-193 (885)
252 PF08506 Cse1: Cse1; InterPro 92.9 0.98 2.1E-05 41.8 9.8 148 194-350 205-370 (370)
253 PF12830 Nipped-B_C: Sister ch 92.8 4.8 0.0001 33.3 13.6 145 73-230 10-168 (187)
254 KOG2005 26S proteasome regulat 92.8 7.5 0.00016 38.2 15.5 243 116-397 454-704 (878)
255 smart00638 LPD_N Lipoprotein N 92.8 5.3 0.00012 39.7 15.7 194 115-344 358-567 (574)
256 COG5656 SXM1 Importin, protein 92.8 11 0.00025 37.5 18.6 132 134-272 389-530 (970)
257 KOG1525 Sister chromatid cohes 92.7 17 0.00036 39.3 24.3 112 283-397 259-405 (1266)
258 KOG1949 Uncharacterized conser 92.6 8.9 0.00019 38.0 15.8 175 210-395 184-368 (1005)
259 PF12830 Nipped-B_C: Sister ch 92.6 5.2 0.00011 33.1 13.0 73 115-193 9-81 (187)
260 COG5209 RCD1 Uncharacterized p 92.5 0.6 1.3E-05 39.0 7.0 106 85-192 114-224 (315)
261 KOG1832 HIV-1 Vpr-binding prot 92.4 2.2 4.8E-05 43.1 11.7 311 83-400 365-776 (1516)
262 PF08324 PUL: PUL domain; Int 92.3 1.6 3.4E-05 38.6 10.3 157 117-276 66-237 (268)
263 PF12231 Rif1_N: Rap1-interact 92.3 9.6 0.00021 35.5 19.3 223 170-397 59-303 (372)
264 PF12231 Rif1_N: Rap1-interact 91.8 11 0.00024 35.1 19.3 305 82-397 4-352 (372)
265 PF03378 CAS_CSE1: CAS/CSE pro 91.7 13 0.00027 35.5 16.3 273 116-398 28-325 (435)
266 PF12031 DUF3518: Domain of un 91.5 0.54 1.2E-05 39.9 5.8 85 85-171 138-230 (257)
267 PF04388 Hamartin: Hamartin pr 91.5 5.1 0.00011 40.4 13.6 158 71-250 4-161 (668)
268 KOG2933 Uncharacterized conser 91.4 2.2 4.7E-05 37.7 9.5 139 203-355 92-234 (334)
269 PF11538 Snurportin1: Snurport 91.4 0.18 3.9E-06 29.4 2.1 38 11-49 2-39 (40)
270 KOG1993 Nuclear transport rece 91.3 18 0.00039 36.5 17.1 265 119-395 531-810 (978)
271 KOG0891 DNA-dependent protein 91.1 2.7 5.9E-05 47.8 12.1 203 153-357 561-765 (2341)
272 PF11707 Npa1: Ribosome 60S bi 90.9 13 0.00027 34.1 18.3 110 285-394 58-184 (330)
273 PF12031 DUF3518: Domain of un 90.6 0.78 1.7E-05 38.9 5.9 87 298-385 139-233 (257)
274 PF10521 DUF2454: Protein of u 90.5 2.7 5.9E-05 37.4 9.8 138 115-253 120-277 (282)
275 cd03569 VHS_Hrs_Vps27p VHS dom 90.4 1 2.2E-05 35.4 6.2 74 71-144 41-114 (142)
276 PF11707 Npa1: Ribosome 60S bi 90.2 15 0.00032 33.7 16.9 155 116-272 58-239 (330)
277 cd03568 VHS_STAM VHS domain fa 90.0 1.2 2.5E-05 35.1 6.2 75 71-145 37-111 (144)
278 PF06685 DUF1186: Protein of u 89.9 12 0.00027 32.4 14.7 135 130-287 57-201 (249)
279 PF12074 DUF3554: Domain of un 89.4 5 0.00011 36.9 11.0 209 112-335 20-254 (339)
280 KOG1788 Uncharacterized conser 89.1 5.9 0.00013 41.1 11.4 282 79-378 475-784 (2799)
281 KOG1992 Nuclear export recepto 89.1 22 0.00047 36.1 15.0 156 110-269 357-526 (960)
282 cd03569 VHS_Hrs_Vps27p VHS dom 88.9 2.7 5.9E-05 33.0 7.6 75 157-231 41-116 (142)
283 cd03561 VHS VHS domain family; 88.7 9.1 0.0002 29.6 10.3 75 158-232 38-115 (133)
284 KOG0392 SNF2 family DNA-depend 88.5 7.2 0.00016 41.3 11.8 237 71-315 77-328 (1549)
285 smart00288 VHS Domain present 88.2 1.8 3.9E-05 33.6 6.1 74 71-144 37-111 (133)
286 COG5209 RCD1 Uncharacterized p 88.0 3.1 6.7E-05 34.9 7.5 98 299-397 116-218 (315)
287 PF14225 MOR2-PAG1_C: Cell mor 87.8 18 0.0004 31.7 16.9 181 157-355 64-254 (262)
288 PF08324 PUL: PUL domain; Int 87.7 2 4.3E-05 37.9 6.9 133 212-344 122-263 (268)
289 PF06685 DUF1186: Protein of u 87.6 18 0.00039 31.4 13.0 117 240-374 72-203 (249)
290 cd03561 VHS VHS domain family; 87.6 3.1 6.8E-05 32.2 7.1 75 71-145 37-113 (133)
291 PF08167 RIX1: rRNA processing 87.5 13 0.00028 30.1 10.9 116 115-234 26-148 (165)
292 cd03567 VHS_GGA VHS domain fam 87.4 2.4 5.2E-05 33.1 6.3 74 71-144 38-116 (139)
293 PLN03076 ARF guanine nucleotid 86.9 61 0.0013 36.8 21.1 266 125-398 1148-1490(1780)
294 smart00288 VHS Domain present 86.5 13 0.00027 28.9 10.0 74 158-231 38-113 (133)
295 PF10274 ParcG: Parkin co-regu 86.3 8.7 0.00019 31.5 9.1 76 114-191 38-114 (183)
296 cd03568 VHS_STAM VHS domain fa 86.1 5.5 0.00012 31.4 7.7 74 158-231 38-112 (144)
297 PF04869 Uso1_p115_head: Uso1 85.8 27 0.00058 31.6 13.4 155 129-313 52-232 (312)
298 PF10521 DUF2454: Protein of u 85.7 9.5 0.00021 34.0 10.1 136 200-337 120-277 (282)
299 KOG1410 Nuclear transport rece 85.4 42 0.00091 33.4 22.3 291 71-378 5-355 (1082)
300 KOG0413 Uncharacterized conser 85.1 4.1 8.9E-05 41.7 7.9 130 171-313 945-1074(1529)
301 KOG0891 DNA-dependent protein 84.8 28 0.00062 40.3 14.9 212 174-399 461-679 (2341)
302 PF00790 VHS: VHS domain; Int 84.5 13 0.00027 29.1 9.2 74 158-231 43-120 (140)
303 cd03572 ENTH_epsin_related ENT 83.9 17 0.00036 27.7 11.0 93 300-398 18-120 (122)
304 PF12726 SEN1_N: SEN1 N termin 83.5 24 0.00051 36.3 13.1 143 74-231 444-587 (727)
305 KOG1988 Uncharacterized conser 82.8 61 0.0013 33.3 14.6 252 73-355 26-281 (970)
306 KOG4464 Signaling protein RIC- 82.2 39 0.00085 31.4 12.1 154 203-356 49-232 (532)
307 KOG1788 Uncharacterized conser 82.1 57 0.0012 34.5 14.3 254 93-355 664-982 (2799)
308 KOG0301 Phospholipase A2-activ 82.0 57 0.0012 32.4 16.7 160 129-293 558-726 (745)
309 PF10274 ParcG: Parkin co-regu 81.1 29 0.00063 28.5 10.6 73 284-358 39-112 (183)
310 PF13001 Ecm29: Proteasome sta 80.8 45 0.00097 32.6 13.3 60 169-231 386-445 (501)
311 PF04388 Hamartin: Hamartin pr 79.9 45 0.00097 33.9 13.2 91 284-377 71-161 (668)
312 PF00790 VHS: VHS domain; Int 79.4 3.1 6.7E-05 32.6 4.0 74 71-144 42-118 (140)
313 PF14726 RTTN_N: Rotatin, an a 79.1 22 0.00047 25.9 7.9 68 112-181 28-95 (98)
314 PF03378 CAS_CSE1: CAS/CSE pro 78.5 64 0.0014 30.8 14.4 214 169-395 42-270 (435)
315 KOG1848 Uncharacterized conser 78.3 79 0.0017 34.4 14.3 225 167-396 852-1131(1610)
316 smart00567 EZ_HEAT E-Z type HE 76.0 5.2 0.00011 21.5 3.2 18 341-360 2-19 (30)
317 KOG0413 Uncharacterized conser 75.8 5.2 0.00011 41.0 5.2 92 298-399 946-1037(1529)
318 PF14726 RTTN_N: Rotatin, an a 75.7 28 0.00061 25.3 8.3 69 323-393 28-96 (98)
319 PF08216 CTNNBL: Catenin-beta- 75.0 3.6 7.7E-05 30.3 2.9 43 132-175 63-105 (108)
320 PF08389 Xpo1: Exportin 1-like 74.6 21 0.00045 27.8 7.7 125 216-350 4-148 (148)
321 PLN03205 ATR interacting prote 74.5 64 0.0014 29.9 11.1 160 240-401 322-520 (652)
322 PF12783 Sec7_N: Guanine nucle 74.3 26 0.00055 28.3 8.3 108 86-197 37-157 (168)
323 KOG1832 HIV-1 Vpr-binding prot 73.9 28 0.0006 35.8 9.4 166 105-281 592-783 (1516)
324 KOG0301 Phospholipase A2-activ 73.3 79 0.0017 31.5 12.1 143 250-399 553-706 (745)
325 KOG1822 Uncharacterized conser 72.8 1.8E+02 0.0038 33.2 19.4 214 116-337 878-1110(2067)
326 PF13001 Ecm29: Proteasome sta 72.8 70 0.0015 31.3 12.2 213 85-315 251-491 (501)
327 KOG3132 m3G-cap-specific nucle 72.5 2.9 6.2E-05 35.3 2.2 46 9-54 23-68 (325)
328 KOG0392 SNF2 family DNA-depend 72.5 90 0.0019 33.7 12.9 176 214-398 143-326 (1549)
329 PF12726 SEN1_N: SEN1 N termin 71.7 66 0.0014 33.2 12.2 127 240-369 440-569 (727)
330 PF08216 CTNNBL: Catenin-beta- 71.5 7.2 0.00016 28.7 3.8 44 258-302 63-106 (108)
331 KOG2149 Uncharacterized conser 71.3 57 0.0012 30.3 10.2 114 242-357 59-172 (393)
332 PF14666 RICTOR_M: Rapamycin-i 71.2 66 0.0014 27.6 13.4 130 255-397 78-225 (226)
333 PF08713 DNA_alkylation: DNA a 71.0 62 0.0013 27.2 12.2 141 117-282 54-196 (213)
334 PF09324 DUF1981: Domain of un 70.9 10 0.00022 26.8 4.5 71 196-266 14-84 (86)
335 PF11791 Aconitase_B_N: Aconit 70.7 33 0.00072 27.0 7.4 99 243-355 24-123 (154)
336 KOG4464 Signaling protein RIC- 70.6 94 0.002 29.1 17.2 81 129-209 111-197 (532)
337 PF03130 HEAT_PBS: PBS lyase H 70.6 4.7 0.0001 21.2 2.1 14 342-355 1-14 (27)
338 PF08389 Xpo1: Exportin 1-like 70.5 27 0.00059 27.1 7.6 49 255-307 100-148 (148)
339 PF09758 FPL: Uncharacterised 68.5 34 0.00073 27.0 7.2 122 147-268 16-147 (149)
340 COG5110 RPN1 26S proteasome re 68.2 1.2E+02 0.0027 29.5 16.7 103 116-231 452-558 (881)
341 KOG2676 Uncharacterized conser 67.2 8.5 0.00018 34.8 4.1 63 135-197 376-440 (478)
342 cd08050 TAF6 TATA Binding Prot 67.1 82 0.0018 29.0 10.7 110 200-310 211-338 (343)
343 KOG0803 Predicted E3 ubiquitin 66.2 2.1E+02 0.0046 31.5 16.9 254 72-335 42-330 (1312)
344 PF08713 DNA_alkylation: DNA a 66.2 24 0.00051 29.7 6.7 77 283-367 120-196 (213)
345 PF08767 CRM1_C: CRM1 C termin 64.0 1.2E+02 0.0025 27.7 13.3 160 129-291 41-219 (319)
346 PF12074 DUF3554: Domain of un 63.9 1.2E+02 0.0026 27.8 16.4 193 199-398 22-236 (339)
347 cd03565 VHS_Tom1 VHS domain fa 63.8 34 0.00074 26.8 6.6 74 71-144 38-115 (141)
348 KOG2549 Transcription initiati 63.7 1.5E+02 0.0033 28.9 12.3 144 73-229 209-370 (576)
349 COG5101 CRM1 Importin beta-rel 63.5 1.7E+02 0.0036 29.3 19.0 58 82-144 204-261 (1053)
350 KOG2073 SAP family cell cycle 63.0 2E+02 0.0043 30.0 15.9 182 191-380 182-377 (838)
351 cd08050 TAF6 TATA Binding Prot 62.7 1.3E+02 0.0028 27.8 11.4 112 157-269 210-339 (343)
352 cd03567 VHS_GGA VHS domain fam 62.7 72 0.0016 24.9 8.6 94 293-396 15-115 (139)
353 COG5095 TAF6 Transcription ini 61.2 69 0.0015 28.5 8.3 131 129-270 212-359 (450)
354 cd00197 VHS_ENTH_ANTH VHS, ENT 61.1 40 0.00086 25.1 6.4 72 72-143 38-114 (115)
355 PF04499 SAPS: SIT4 phosphatas 60.8 56 0.0012 31.6 8.7 82 150-231 55-150 (475)
356 PF08064 UME: UME (NUC010) dom 60.6 61 0.0013 23.9 7.1 87 283-375 11-103 (107)
357 PF04499 SAPS: SIT4 phosphatas 59.9 1.3E+02 0.0029 29.1 11.0 110 283-396 21-147 (475)
358 KOG2149 Uncharacterized conser 59.7 1.1E+02 0.0024 28.5 9.8 111 285-398 60-171 (393)
359 PF04821 TIMELESS: Timeless pr 59.0 1.3E+02 0.0028 26.6 14.5 189 69-314 11-210 (266)
360 smart00802 UME Domain in UVSB 59.0 60 0.0013 24.0 6.8 86 283-374 11-102 (107)
361 PF11791 Aconitase_B_N: Aconit 57.8 19 0.00041 28.3 4.0 27 370-396 96-122 (154)
362 KOG1525 Sister chromatid cohes 57.8 3E+02 0.0065 30.4 17.9 72 325-398 259-330 (1266)
363 KOG2038 CAATT-binding transcri 57.6 2.3E+02 0.005 29.1 15.3 121 70-196 229-380 (988)
364 COG5110 RPN1 26S proteasome re 57.6 2E+02 0.0043 28.3 17.8 220 157-377 47-323 (881)
365 PF12054 DUF3535: Domain of un 56.7 1.9E+02 0.0041 27.8 12.8 80 85-169 101-180 (441)
366 KOG0889 Histone acetyltransfer 56.6 2.7E+02 0.0058 34.1 13.8 176 198-375 1125-1326(3550)
367 KOG2005 26S proteasome regulat 56.3 2.3E+02 0.0049 28.6 16.8 248 115-371 49-316 (878)
368 PF09324 DUF1981: Domain of un 55.7 51 0.0011 23.2 5.7 66 323-393 15-84 (86)
369 cd03565 VHS_Tom1 VHS domain fa 55.0 1E+02 0.0022 24.1 8.0 74 158-231 39-117 (141)
370 PF06743 FAST_1: FAST kinase-l 54.8 52 0.0011 22.1 5.5 66 220-286 4-69 (71)
371 KOG2549 Transcription initiati 54.3 2.2E+02 0.0048 27.8 12.1 138 163-311 213-369 (576)
372 PF06012 DUF908: Domain of Unk 54.3 75 0.0016 29.1 8.1 78 130-208 237-325 (329)
373 PF06012 DUF908: Domain of Unk 54.1 74 0.0016 29.1 8.0 75 258-333 239-324 (329)
374 PF04869 Uso1_p115_head: Uso1 53.5 1.8E+02 0.0038 26.5 15.5 159 240-398 33-232 (312)
375 KOG4524 Uncharacterized conser 52.7 3E+02 0.0066 29.0 16.0 95 283-379 803-900 (1014)
376 KOG1791 Uncharacterized conser 52.6 1.3E+02 0.0028 33.3 10.1 205 148-353 1430-1658(1758)
377 KOG2038 CAATT-binding transcri 50.4 82 0.0018 32.0 7.8 106 240-355 303-409 (988)
378 cd06561 AlkD_like A new struct 50.2 58 0.0013 26.9 6.3 75 286-367 108-182 (197)
379 PF12765 Cohesin_HEAT: HEAT re 49.7 17 0.00037 21.6 2.1 25 368-392 18-42 (42)
380 KOG2199 Signal transducing ada 49.6 1E+02 0.0022 28.6 7.7 92 293-394 22-115 (462)
381 KOG4524 Uncharacterized conser 49.6 58 0.0012 33.9 6.9 96 239-336 801-900 (1014)
382 PF13925 Katanin_con80: con80 47.7 1.4E+02 0.003 24.0 7.9 75 198-273 27-101 (164)
383 KOG1992 Nuclear export recepto 45.6 3.7E+02 0.008 27.9 24.3 317 74-399 40-437 (960)
384 KOG2676 Uncharacterized conser 44.9 27 0.00059 31.7 3.5 61 303-364 376-438 (478)
385 PF14663 RasGEF_N_2: Rapamycin 44.9 78 0.0017 23.7 5.6 39 115-155 9-47 (115)
386 PF12463 DUF3689: Protein of u 43.9 2.5E+02 0.0053 25.4 11.8 83 282-364 94-182 (303)
387 PF04510 DUF577: Family of unk 43.1 1.8E+02 0.0039 23.6 8.3 110 283-397 42-164 (174)
388 PF08064 UME: UME (NUC010) dom 42.3 1.2E+02 0.0027 22.3 6.2 67 325-396 11-82 (107)
389 PF14663 RasGEF_N_2: Rapamycin 42.1 51 0.0011 24.7 4.2 31 158-188 9-39 (115)
390 PF14631 FancD2: Fanconi anaem 41.3 3.6E+02 0.0079 30.4 11.9 128 210-344 445-572 (1426)
391 PF14631 FancD2: Fanconi anaem 41.1 2.8E+02 0.006 31.3 10.9 148 115-270 432-587 (1426)
392 KOG1087 Cytosolic sorting prot 40.6 59 0.0013 31.2 5.2 70 71-141 38-109 (470)
393 KOG1087 Cytosolic sorting prot 40.4 2.1E+02 0.0045 27.6 8.8 93 291-393 13-108 (470)
394 KOG2213 Apoptosis inhibitor 5/ 40.1 3.2E+02 0.0069 25.6 13.6 180 169-393 36-222 (460)
395 PF15178 TOM_sub5: Mitochondri 40.0 41 0.0009 20.3 2.6 12 17-28 8-19 (51)
396 PF07923 N1221: N1221-like pro 39.5 87 0.0019 28.1 6.0 54 325-379 60-127 (293)
397 PF08454 RIH_assoc: RyR and IP 38.1 1.7E+02 0.0036 21.8 7.0 41 296-336 66-107 (109)
398 PF08767 CRM1_C: CRM1 C termin 38.0 3.1E+02 0.0068 24.9 16.1 181 172-354 42-243 (319)
399 KOG2152 Sister chromatid cohes 38.0 3.4E+02 0.0073 27.8 9.8 71 160-230 335-406 (865)
400 smart00802 UME Domain in UVSB 37.5 1.7E+02 0.0036 21.7 6.2 67 325-396 11-82 (107)
401 PF01365 RYDR_ITPR: RIH domain 37.3 2.1E+02 0.0045 24.0 7.8 78 298-379 76-153 (207)
402 KOG2073 SAP family cell cycle 36.6 1.6E+02 0.0034 30.8 7.7 58 107-164 183-246 (838)
403 COG5095 TAF6 Transcription ini 36.5 3.2E+02 0.0069 24.6 9.1 135 166-311 207-358 (450)
404 KOG2199 Signal transducing ada 36.1 2.1E+02 0.0045 26.7 7.6 81 158-238 46-128 (462)
405 PF09758 FPL: Uncharacterised 35.6 1.9E+02 0.0042 22.9 6.6 123 188-310 15-147 (149)
406 PF12397 U3snoRNP10: U3 small 35.6 1.9E+02 0.0041 21.7 9.5 70 115-188 7-76 (121)
407 cd03562 CID CID (CTD-Interacti 35.1 1.9E+02 0.004 21.4 7.7 87 212-307 17-103 (114)
408 PF08623 TIP120: TATA-binding 35.1 1.6E+02 0.0034 24.0 6.2 77 255-336 41-117 (169)
409 KOG1848 Uncharacterized conser 34.6 4.2E+02 0.009 29.4 10.4 95 129-228 856-957 (1610)
410 PF11229 DUF3028: Protein of u 34.4 4.5E+02 0.0098 25.7 14.9 251 115-374 98-372 (589)
411 PF12054 DUF3535: Domain of un 34.2 4.3E+02 0.0093 25.4 14.8 109 171-284 101-211 (441)
412 PF01365 RYDR_ITPR: RIH domain 34.1 77 0.0017 26.6 4.6 79 171-252 75-153 (207)
413 PF04821 TIMELESS: Timeless pr 34.0 3.3E+02 0.0072 24.0 13.5 60 297-356 134-209 (266)
414 PF11894 DUF3414: Protein of u 33.6 7.5E+02 0.016 28.8 13.3 68 297-364 578-648 (1691)
415 PF11935 DUF3453: Domain of un 33.0 3.2E+02 0.007 23.6 8.5 83 283-365 43-155 (239)
416 PF07923 N1221: N1221-like pro 33.0 90 0.002 28.0 5.1 55 281-335 58-126 (293)
417 PF07539 DRIM: Down-regulated 32.4 2.5E+02 0.0053 22.0 10.2 81 157-250 17-97 (141)
418 PF12463 DUF3689: Protein of u 32.1 3.8E+02 0.0083 24.2 12.9 128 192-319 2-180 (303)
419 KOG2011 Sister chromatid cohes 31.3 4.2E+02 0.0092 28.5 9.9 130 129-266 301-431 (1048)
420 COG2914 Uncharacterized protei 31.3 26 0.00057 25.0 1.0 29 10-38 68-97 (99)
421 PF12783 Sec7_N: Guanine nucle 31.1 2.8E+02 0.006 22.2 9.6 79 277-356 67-147 (168)
422 PF14868 DUF4487: Domain of un 30.7 5E+02 0.011 25.9 9.9 24 248-271 530-553 (559)
423 PF07571 DUF1546: Protein of u 30.7 2E+02 0.0044 20.5 6.1 57 212-268 18-76 (92)
424 cd01882 BMS1 Bms1. Bms1 is an 30.5 18 0.0004 30.9 0.2 23 28-50 11-33 (225)
425 COG5537 IRR1 Cohesin [Cell div 28.1 6.2E+02 0.014 25.3 11.9 98 168-269 286-385 (740)
426 cd03572 ENTH_epsin_related ENT 28.0 2.7E+02 0.0059 21.2 10.3 55 260-319 20-74 (122)
427 cd06561 AlkD_like A new struct 27.8 3E+02 0.0065 22.5 7.2 67 210-281 115-181 (197)
428 KOG2256 Predicted protein invo 27.3 6.6E+02 0.014 25.3 11.3 26 332-357 434-459 (661)
429 KOG2312 Predicted transcriptio 27.1 16 0.00034 36.1 -0.8 123 124-250 44-170 (847)
430 PF04118 Dopey_N: Dopey, N-ter 26.7 4.8E+02 0.01 23.6 14.2 183 202-394 57-251 (307)
431 PLN03205 ATR interacting prote 26.2 2.2E+02 0.0048 26.6 6.1 113 285-397 325-446 (652)
432 KOG0803 Predicted E3 ubiquitin 26.2 6.5E+02 0.014 28.1 10.5 118 232-355 32-153 (1312)
433 KOG4231 Intracellular membrane 26.1 80 0.0017 30.4 3.5 69 327-396 330-398 (763)
434 PF14868 DUF4487: Domain of un 26.1 4.9E+02 0.011 25.9 9.0 75 325-399 479-554 (559)
435 cd07064 AlkD_like_1 A new stru 25.8 4E+02 0.0087 22.4 8.3 75 286-368 118-192 (208)
436 KOG2085 Serine/threonine prote 24.8 6E+02 0.013 24.1 9.7 68 128-195 146-215 (457)
437 KOG2081 Nuclear transport regu 24.1 7E+02 0.015 24.6 22.6 263 73-355 155-457 (559)
438 PF14750 INTS2: Integrator com 23.3 9E+02 0.02 26.4 10.8 92 156-271 874-978 (1049)
439 PF15573 Imm27: Immunity prote 23.1 3.6E+02 0.0078 23.0 6.3 91 286-397 49-142 (259)
440 PF08623 TIP120: TATA-binding 22.8 3.8E+02 0.0082 21.8 6.4 76 213-292 40-115 (169)
441 PF13925 Katanin_con80: con80 22.8 4.1E+02 0.0088 21.4 8.2 56 129-186 43-98 (164)
442 PF14838 INTS5_C: Integrator c 22.7 8.4E+02 0.018 25.0 16.8 80 283-363 310-397 (696)
443 KOG4231 Intracellular membrane 22.4 1.6E+02 0.0034 28.5 4.6 70 285-355 330-399 (763)
444 PF07539 DRIM: Down-regulated 21.3 1.1E+02 0.0024 24.0 3.0 29 367-395 16-44 (141)
445 PF12397 U3snoRNP10: U3 small 20.7 3.7E+02 0.008 20.1 10.0 70 200-272 7-76 (121)
446 KOG2153 Protein involved in th 20.2 5.2E+02 0.011 26.0 7.7 89 218-311 303-391 (704)
447 PF12331 DUF3636: Protein of u 20.2 4.5E+02 0.0097 20.9 8.5 58 279-336 76-147 (149)
No 1
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.3e-77 Score=504.63 Aligned_cols=392 Identities=58% Similarity=0.892 Sum_probs=362.9
Q ss_pred CccHHHhhhccC-C-CCchHHhhhhHHHHHHHHHHhhhHHHHhhhhcc-ccCCCCCcchhhhhhhhhccHHHHHHhhcCC
Q 015687 7 ARTEVRRSKYKV-A-VDAEEGRRRREDNMVEIRKNKREESLLKKRREG-LQAHQPLTNSAALDNKKLESLPAMVAGVWSD 83 (402)
Q Consensus 7 ~~~~~~~~~~k~-~-~~~~~~r~~r~~~~~~lRk~~r~~~~~~kr~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~l~s~ 83 (402)
+.++.|+..||+ | ++++|+||+|++.++||||+||||.++||||.. ..++..+. .....++....+|.+.+.|.|+
T Consensus 5 f~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss-~i~meqq~~~elp~lt~~l~Sd 83 (526)
T COG5064 5 FVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESS-FIPMEQQFYSELPQLTQQLFSD 83 (526)
T ss_pred cchHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhc-cCchhHHhhhhhHHHHHHHhhh
Confidence 467889999998 4 779999999999999999999999999999973 22222211 1122223335789999999999
Q ss_pred CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHH
Q 015687 84 DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV 163 (402)
Q Consensus 84 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 163 (402)
|-+.+..|...+++++|.+..||++.+++.|++|.|++++.+.....++++|+|+|+|+++++..++..+++.|++|.++
T Consensus 84 Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfi 163 (526)
T COG5064 84 DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFI 163 (526)
T ss_pred HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHH
Confidence 99999999999999999999999999999999999999996544378899999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccc-hhhHHHHHHHHHHHHhhhCC-CCCchhhhhc
Q 015687 164 RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGK-PQPLFEQTRP 241 (402)
Q Consensus 164 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~-~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~ 241 (402)
++|.+++.+++++++|+|||++++++.+|+.+++.|++++++.++..+ .+..+.+++.|+|+|||+++ |.+....+..
T Consensus 164 qlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq 243 (526)
T COG5064 164 QLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ 243 (526)
T ss_pred HHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH
Confidence 999999999999999999999999999999999999999999999544 36799999999999999998 8888889999
Q ss_pred hHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHH
Q 015687 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCI 321 (402)
Q Consensus 242 ~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i 321 (402)
.+|.|.+++.+.|+++..+|||+++|+++++.+.++.+++.|+..+|+++|.+++..++.+|++.+||+++|++.+++.+
T Consensus 244 alpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqvi 323 (526)
T COG5064 244 ALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVI 323 (526)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCCC
Q 015687 322 INHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 322 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 400 (402)
++.|+++.+..+|+++ ...+|++|||+++||++|+.++++.+++.+++|+|+.+|.+.+.+++++||||+.|..+||.
T Consensus 324 I~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~ 401 (526)
T COG5064 324 INCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGL 401 (526)
T ss_pred eecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 9999999999999999 88999999999999999999999999999999999999999999999999999999999985
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-73 Score=515.75 Aligned_cols=390 Identities=67% Similarity=1.021 Sum_probs=359.3
Q ss_pred cHHHhhhccC-CCCchHHhhhhHHHHHHHHHHhhhHHHHhhhhccccCCCCCcchhhhhhhhhccHHHHHHhhcCCCHHH
Q 015687 9 TEVRRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNI 87 (402)
Q Consensus 9 ~~~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~~ 87 (402)
...|.++||+ +++++|+||||++..+|+||+||+|.+.|||+...+....+. ...........+..++.+.|+++..
T Consensus 5 ~~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~ 82 (514)
T KOG0166|consen 5 SNNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELMLDEL--LSDSQSQASNLELMLAALYSDDPQQ 82 (514)
T ss_pred hHHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhcccccc--cchhHHHhhhhHHHHHHHhCCCHHH
Confidence 3466677776 799999999999999999999999999999993222221111 1111111223688999999999999
Q ss_pred HHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhC
Q 015687 88 QLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS 167 (402)
Q Consensus 88 ~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~ 167 (402)
+..+...+++++|.+++|+++.++..|++|.|+++|...+++.++++|+|+|+|||+++.+++..+++.|++|.|+.++.
T Consensus 83 q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~ 162 (514)
T KOG0166|consen 83 QLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLS 162 (514)
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhc
Confidence 99999999999999989999999999999999999987666999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC-CCCchhhhhchHHHH
Q 015687 168 SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246 (402)
Q Consensus 168 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L 246 (402)
+++..++++|+|+|+|++++++.+|+.+++.|++++|+.++..+....+.++++|+|+|||+++ |.+.+..+..++|+|
T Consensus 163 s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L 242 (514)
T KOG0166|consen 163 SPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPAL 242 (514)
T ss_pred CCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999966556689999999999999999 999999999999999
Q ss_pred HHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCC
Q 015687 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQA 326 (402)
Q Consensus 247 ~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~ 326 (402)
..++++.|+++..++||+++||++++.+.++.+++.|++++|+++|.+.+..++.+|++++||+++|++.+++.+++.|+
T Consensus 243 ~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~ 322 (514)
T KOG0166|consen 243 LRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGA 322 (514)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCCC
Q 015687 327 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 327 l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 400 (402)
+|.|..++..++...+|++|||+++||++|++++++.+++.|++|.|+.+|+.+++++|++|+|||+|++.+|+
T Consensus 323 L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 323 LPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence 99999999955477899999999999999999999999999999999999999999999999999999999997
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-45 Score=335.30 Aligned_cols=327 Identities=29% Similarity=0.461 Sum_probs=297.2
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 71 ~~i~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
|.+|.+++.|.. .++.+++.|+|+|.+++++. ....+.+++.|.+|.|+.++.+++ ..++.+|+|+|+|++.+++.+
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHH
Confidence 789999999985 56999999999999999986 788889999999999999999999 999999999999999999999
Q ss_pred hHHHHhCCchHHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhh
Q 015687 150 TRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~ 228 (402)
++.+++.|++++|+.++...+. .+...+.|+|.|+|.+....-..-.-..+++.|..++ .+.|++++..+||++++|+
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999987665 7888999999999977521222222234788999999 8999999999999999999
Q ss_pred hCCC-CCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-CCChhhHHHHHHH
Q 015687 229 RGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRT 306 (402)
Q Consensus 229 ~~~~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~-~~~~~v~~~a~~~ 306 (402)
.+.+ ..+.....+++|.|+++|.+.++.++.+|+++++|++.+++..++.+++.|+++.|..++. ++...+++.|+|+
T Consensus 266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~ 345 (514)
T KOG0166|consen 266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT 345 (514)
T ss_pred cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence 8863 3344445899999999999999999999999999999999999999999999999999998 6677799999999
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCCHHHH
Q 015687 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 385 (402)
Q Consensus 307 l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 385 (402)
|+||+.|+.+++++++++|++|.|+.+|++. +..+|++|+|+++|++. ++++++..+++.|++++|+++|...|.++.
T Consensus 346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii 424 (514)
T KOG0166|consen 346 ISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKII 424 (514)
T ss_pred HHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHH
Confidence 9999999999999999999999999999999 89999999999999997 799999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCC
Q 015687 386 KEAAWAISNATSGGSS 401 (402)
Q Consensus 386 ~~a~~aL~nl~~~~~~ 401 (402)
..++.+|.|+...|..
T Consensus 425 ~v~Ld~l~nil~~~e~ 440 (514)
T KOG0166|consen 425 LVALDGLENILKVGEA 440 (514)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999876643
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=2e-45 Score=310.25 Aligned_cols=326 Identities=27% Similarity=0.382 Sum_probs=294.0
Q ss_pred ccHHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 71 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 71 ~~i~~l~~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
|.+|.+++.+. .+..-.++.|+|+|.++.|+. ....+.+++.|.+|.|+++|.+++ .+++.+++|+|+|++.+++.+
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~~ 191 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEGC 191 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchhH
Confidence 67999999995 566778999999999999987 777888999999999999999998 899999999999999999999
Q ss_pred hHHHHhCCchHHHHHhhCCC--CHHHHHHHHHHHHHhhCCC--chhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHH
Q 015687 150 TRVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDS--PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS 225 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~--~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~ 225 (402)
++.+.+.|++.+++.++.+. +..+...+.|+|.|+|.+. |..-..+. ..++.|.+++ ...|+++...|||+++
T Consensus 192 RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~is--qalpiL~KLi-ys~D~evlvDA~WAiS 268 (526)
T COG5064 192 RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNIS--QALPILAKLI-YSRDPEVLVDACWAIS 268 (526)
T ss_pred HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHH--HHHHHHHHHH-hhcCHHHHHHHHHHHH
Confidence 99999999999999998864 3478899999999999653 22222232 2688888888 8889999999999999
Q ss_pred HhhhCC-CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHH
Q 015687 226 NFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL 304 (402)
Q Consensus 226 ~l~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~ 304 (402)
+|+.+. .........++.+.|+++|.+++..++..+++.++|+..+++...+.++..|+++.+..+|+++...+++.||
T Consensus 269 YlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaC 348 (526)
T COG5064 269 YLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEAC 348 (526)
T ss_pred HhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhh
Confidence 999886 2333333478888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC---CHHHHHHHHHcCCHHHHHHHhccCC
Q 015687 305 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG---NVNQIQAIIEAGIIGPLVNLLLNAE 381 (402)
Q Consensus 305 ~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~i~~L~~ll~~~~ 381 (402)
|+|+|+..|+.++++.+++.+++|+|+.+|.+. +..++++|||+++|.+.| .|+.+..+++.|++.+|+++|...+
T Consensus 349 WTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~d 427 (526)
T COG5064 349 WTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVD 427 (526)
T ss_pred eeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccC
Confidence 999999999999999999999999999999988 999999999999999974 7899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCC
Q 015687 382 FEIKKEAAWAISNATSGGSSW 402 (402)
Q Consensus 382 ~~v~~~a~~aL~nl~~~~~~~ 402 (402)
-++-+.++.++.|+...|.-|
T Consensus 428 Nkiiev~LD~~eniLk~Ge~d 448 (526)
T COG5064 428 NKIIEVALDAIENILKVGEQD 448 (526)
T ss_pred ccchhhhHHHHHHHHhhhhHH
Confidence 999999999999999988765
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.5e-37 Score=321.33 Aligned_cols=326 Identities=21% Similarity=0.250 Sum_probs=281.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
|.+|.++..|.++++..+..|+..+.++++.. .++...+++.|++|.|+++|.+++++.+|+.|+|+|++|++++++++
T Consensus 189 GaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r 267 (2102)
T PLN03200 189 GGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAK 267 (2102)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHH
Confidence 78999999999999999999999998887653 56788899999999999999876547999999999999999999999
Q ss_pred HHHHhCCchHHHHHhhCCCC---------HHHHHHHHHHHHHhhCCCch-----------hhHH---HHhcCChHHHHHH
Q 015687 151 RVVIDHGAVPIFVRLLSSPT---------DDVREQAVWALGNVAGDSPK-----------CRDL---VLSNGALMPLLAQ 207 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~---------~~v~~~a~~~L~nl~~~~~~-----------~~~~---~~~~g~i~~L~~~ 207 (402)
..+++.|++|.|+.++.+++ ..++++|+|+|+|||++.+. .|+. ....|++.+++..
T Consensus 268 ~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l 347 (2102)
T PLN03200 268 QAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMV 347 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh
Confidence 99999999999999998654 44699999999999987543 2222 2445788888888
Q ss_pred hccchhhHHH----HHHHHHHHHhhhCC-CCCchhhh-------------------hchHHHHHHhccCCChhHHHHHHH
Q 015687 208 FNEHAKLSML----RNATWTLSNFCRGK-PQPLFEQT-------------------RPALPALERLIHSNDDEVLTDACW 263 (402)
Q Consensus 208 l~~~~~~~~~----~~a~~~L~~l~~~~-~~~~~~~~-------------------~~~l~~L~~lL~~~~~~v~~~a~~ 263 (402)
+ +.++...+ ..++|+|.+|++++ |....... .++++.|+.+|...+.+++.+++|
T Consensus 348 ~-d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~ 426 (2102)
T PLN03200 348 F-DSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIR 426 (2102)
T ss_pred c-CCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHH
Confidence 8 34433333 36789999999987 43322111 345678888999899999999999
Q ss_pred HHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHH
Q 015687 264 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK 343 (402)
Q Consensus 264 ~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~ 343 (402)
+|.+++.++.+.++.+.+.|+++.|+.+|.+++..++..|+++++|++.++++++..++++|++|.|+++|.++ ++.++
T Consensus 427 aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~iq 505 (2102)
T PLN03200 427 ALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKAK 505 (2102)
T ss_pred HHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCCC
Q 015687 344 KEACWTISNITAGNVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 344 ~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 400 (402)
++|+|+|+|++.++++ ++.++ +.|+++.|+++|.++++++++.|+|+|.|++.+++
T Consensus 506 eeAawAL~NLa~~~~q-ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d 562 (2102)
T PLN03200 506 EDSATVLWNLCCHSED-IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD 562 (2102)
T ss_pred HHHHHHHHHHhCCcHH-HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc
Confidence 9999999999997444 55555 78999999999999999999999999999987765
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=9.1e-35 Score=300.81 Aligned_cols=325 Identities=18% Similarity=0.196 Sum_probs=293.2
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
++++.++.+|...+.+.|..+++.|..+..++ ...++.+.+.|++|.|+++|.+++ ..+|..|+|+|++++.++++++
T Consensus 404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr 481 (2102)
T PLN03200 404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK 481 (2102)
T ss_pred cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence 57888999999999999999999999997654 677888999999999999999988 8999999999999999888999
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
..+++.|+||.|+++|.+++..+++.|+|+|+|++.+.+..+..+.+.|++++|+++| .+.+...+..++|+|.+|+..
T Consensus 482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998888888888899999999999 666889999999999999754
Q ss_pred CCCCc-----------------------------------h---hhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCC
Q 015687 231 KPQPL-----------------------------------F---EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (402)
Q Consensus 231 ~~~~~-----------------------------------~---~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~ 272 (402)
..... . ....+++|.|+.++.++++.++..|+|+|.+++.+.
T Consensus 561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~ 640 (2102)
T PLN03200 561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR 640 (2102)
T ss_pred cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 31110 0 002468999999999999999999999999999999
Q ss_pred hHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCC-hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 015687 273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (402)
Q Consensus 273 ~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~-~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 351 (402)
.+..+.++..|++++++.+|.+.+..++..++++|+|+..+. ..+...+++.|++|+|+++|.++ +..++..|+.+|.
T Consensus 641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa 719 (2102)
T PLN03200 641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA 719 (2102)
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence 988899999999999999999999999999999999999754 45566778999999999999998 9999999999999
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCCC
Q 015687 352 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 352 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 400 (402)
|++.+ ++....+.+.|+++.|+++|++++++.|+.|+|+|.+++.+++
T Consensus 720 nLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 720 NLLSD-PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHHcC-chHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence 99986 4556778889999999999999999999999999999998876
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.2e-28 Score=209.04 Aligned_cols=323 Identities=21% Similarity=0.330 Sum_probs=284.3
Q ss_pred hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCc
Q 015687 69 KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 148 (402)
Q Consensus 69 ~~~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 148 (402)
..|++..+.++-++.|...|..++.+|.++... .++.+.++..|.+|.|+.++.+++ .++|+.+..++++|+-+ ..
T Consensus 165 ~sGaL~pltrLakskdirvqrnatgaLlnmThs--~EnRr~LV~aG~lpvLVsll~s~d-~dvqyycttaisnIaVd-~~ 240 (550)
T KOG4224|consen 165 RSGALEPLTRLAKSKDIRVQRNATGALLNMTHS--RENRRVLVHAGGLPVLVSLLKSGD-LDVQYYCTTAISNIAVD-RR 240 (550)
T ss_pred hccchhhhHhhcccchhhHHHHHHHHHHHhhhh--hhhhhhhhccCCchhhhhhhccCC-hhHHHHHHHHhhhhhhh-HH
Confidence 347888899977889999999999999999653 578899999999999999999999 99999999999999985 77
Q ss_pred chHHHHhCC--chHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHH
Q 015687 149 NTRVVIDHG--AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (402)
Q Consensus 149 ~~~~~~~~g--~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~ 226 (402)
.+..+.+.| .+|.|++++.++++.++.+|..+|+|++.+.. ++..+.+.|.+|.+++++ +++..........++.|
T Consensus 241 ~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Ll-qs~~~plilasVaCIrn 318 (550)
T KOG4224|consen 241 ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELL-QSPMGPLILASVACIRN 318 (550)
T ss_pred HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHH-hCcchhHHHHHHHHHhh
Confidence 888899888 99999999999999999999999999998876 677888999999999999 77777777788889999
Q ss_pred hhhCCCCCchhhhhchHHHHHHhccCCC-hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHH
Q 015687 227 FCRGKPQPLFEQTRPALPALERLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 305 (402)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~ 305 (402)
++-++-+.......|++..|+.+|...| ++++..|..+|.+++.........+.++|.++.+..++.+....++...-.
T Consensus 319 isihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisa 398 (550)
T KOG4224|consen 319 ISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISA 398 (550)
T ss_pred cccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHH
Confidence 9998766666666899999999998765 559999999999999877777788999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH------cCCHHHHHHHhcc
Q 015687 306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE------AGIIGPLVNLLLN 379 (402)
Q Consensus 306 ~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~------~~~i~~L~~ll~~ 379 (402)
+++.++.. +.....+.+.|++|.|+.+..+. +.+++.+|+-+|.|++.. .++-..+++ .|+-..|++++.+
T Consensus 399 c~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss~-v~~YarviEawd~P~~gi~g~L~Rfl~S 475 (550)
T KOG4224|consen 399 CIAQLALN-DNDKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSSD-VEHYARVIEAWDHPVQGIQGRLARFLAS 475 (550)
T ss_pred HHHHHHhc-cccHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhhh-hHHHHHHHHHhcCcchhHHHHHHHHHhh
Confidence 99999874 45678899999999999999988 999999999999999985 333344443 4677889999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCC
Q 015687 380 AEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 380 ~~~~v~~~a~~aL~nl~~~~~ 400 (402)
++.-++..|.|++..+...+.
T Consensus 476 ~~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 476 HELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred hHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999987653
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.8e-28 Score=207.57 Aligned_cols=321 Identities=22% Similarity=0.288 Sum_probs=284.0
Q ss_pred hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCc
Q 015687 69 KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 148 (402)
Q Consensus 69 ~~~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 148 (402)
.+.++..++..+.++..+.|..++.++.+++.. ..+...+..+|++..+..+-++.+ ..+|..+..+|.|+... .+
T Consensus 124 ~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmThs-~E 199 (550)
T KOG4224|consen 124 SLLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTHS-RE 199 (550)
T ss_pred eccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhhh-hh
Confidence 356788888888888889999999999999875 356667889999999999777777 89999999999999874 89
Q ss_pred chHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcC--ChHHHHHHhccchhhHHHHHHHHHHHH
Q 015687 149 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG--ALMPLLAQFNEHAKLSMLRNATWTLSN 226 (402)
Q Consensus 149 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~~L~~~l~~~~~~~~~~~a~~~L~~ 226 (402)
+++.++..|++|.|+.++.+.+..++..|+.+++|++.+.. .|..+.+.+ .++.|+.++ .++++.++-.|.-+|.|
T Consensus 200 nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrn 277 (550)
T KOG4224|consen 200 NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRN 277 (550)
T ss_pred hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998766 578888888 899999999 88899999999999999
Q ss_pred hhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC-hhhHHHHHH
Q 015687 227 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS-PSVLIPALR 305 (402)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~-~~v~~~a~~ 305 (402)
++.+..........+.+|.++++|+++..........++.|++-++-.. ..+++.|++.+|+.+|...+ ++++..|..
T Consensus 278 lasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe-~lI~dagfl~pLVrlL~~~dnEeiqchAvs 356 (550)
T KOG4224|consen 278 LASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE-VLIADAGFLRPLVRLLRAGDNEEIQCHAVS 356 (550)
T ss_pred hcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc-cceecccchhHHHHHHhcCCchhhhhhHHH
Confidence 9988544444455899999999999998888888889999998766543 45789999999999998765 569999999
Q ss_pred HHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHH
Q 015687 306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 385 (402)
Q Consensus 306 ~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 385 (402)
++.|++.........+++.|.+|.+..++-++ .-+++.+...+++.++.. ......+.+.|++|.|+..+.+.+.+++
T Consensus 357 tLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~ 434 (550)
T KOG4224|consen 357 TLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEVR 434 (550)
T ss_pred HHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhhc
Confidence 99999998888999999999999999999988 889999999999988874 3446789999999999999999999999
Q ss_pred HHHHHHHHHhhcC
Q 015687 386 KEAAWAISNATSG 398 (402)
Q Consensus 386 ~~a~~aL~nl~~~ 398 (402)
-+|+.||.|+.+.
T Consensus 435 gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 435 GNAAAALINLSSD 447 (550)
T ss_pred ccHHHHHHhhhhh
Confidence 9999999999875
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.92 E-value=3.3e-22 Score=192.54 Aligned_cols=323 Identities=20% Similarity=0.273 Sum_probs=264.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
+.++.|++.|.+++.++...++..|.++ |.. ..+...+.+.|+++.|++++.+++ .+++..++++|.|++.+ ++.+
T Consensus 290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkL-Si~-~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSfd-~~~R 365 (708)
T PF05804_consen 290 GIVSLLVKCLDRENEELLILAVTFLKKL-SIF-KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSFD-PELR 365 (708)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHH-cCC-HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCcC-HHHH
Confidence 7899999999999999999999999999 443 567888999999999999999988 89999999999999996 8889
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
..+++.|++|.|+.+|.++ ..+..++.+|.+++.+.. .|..+...++++.++.++..+++..+...+++.+.||+.+
T Consensus 366 ~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~ 442 (708)
T PF05804_consen 366 SQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN 442 (708)
T ss_pred HHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence 9999999999999999864 466779999999998765 7889999999999999886666665555556666665554
Q ss_pred CCCCchh-------------------------------------hhhchHHHHHHhccC-CChhHHHHHHHHHHHhccCC
Q 015687 231 KPQPLFE-------------------------------------QTRPALPALERLIHS-NDDEVLTDACWALSYLSDGT 272 (402)
Q Consensus 231 ~~~~~~~-------------------------------------~~~~~l~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~ 272 (402)
....... ...+.+..|+.++.. ++++....++.+|+|++..+
T Consensus 443 ~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ 522 (708)
T PF05804_consen 443 KRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPD 522 (708)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCC
Confidence 3222111 112334444444433 46788999999999999766
Q ss_pred hHHHHHHHHhCcHHHHHHhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC-CchhHHHHHHHH
Q 015687 273 NDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWT 349 (402)
Q Consensus 273 ~~~~~~~~~~~~i~~L~~~L~~~--~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~-~~~~v~~~a~~~ 349 (402)
.+..+.+.+.+++|.+..+|..+ .+++...++..+|.++. .+.....+.+.|+++.|+.+|... +|.++.-..+++
T Consensus 523 ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~ 601 (708)
T PF05804_consen 523 LDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYV 601 (708)
T ss_pred cCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHH
Confidence 66666666779999999999644 45788999999999986 556777788999999999999765 367899999999
Q ss_pred HHHHhcCCHHHHHHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCCCCC
Q 015687 350 ISNITAGNVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSSW 402 (402)
Q Consensus 350 L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~ 402 (402)
+..+..+ ++.+..++ +.+++..|++++++.+..+++.|-.+|.-++.+...|
T Consensus 602 f~~ll~h-~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w 654 (708)
T PF05804_consen 602 FYQLLFH-EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEW 654 (708)
T ss_pred HHHHHcC-hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHH
Confidence 9999998 45566666 5889999999999999999999999999999888777
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.89 E-value=3.1e-20 Score=179.07 Aligned_cols=316 Identities=18% Similarity=0.200 Sum_probs=250.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHH
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 153 (402)
+++-..++.++ .+...+...|.+++. +......+...|+++.|+++|++++ .++...++.+|.+++.. .+++..+
T Consensus 253 kk~~~l~~kQe-qLlrv~~~lLlNLAe--d~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi~-~ENK~~m 327 (708)
T PF05804_consen 253 KKLQTLIRKQE-QLLRVAFYLLLNLAE--DPRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSIF-KENKDEM 327 (708)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhc--ChHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 33444444433 344567788889864 2455667899999999999999988 89999999999999986 7899999
Q ss_pred HhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCC
Q 015687 154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 233 (402)
Q Consensus 154 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 233 (402)
.+.|+++.|.+++.+++.+++..++++|.||+.+.. .|..+++.|++|+|+.+|.+ +..+..++.+|.++|..+..
T Consensus 328 ~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~-~R~~mV~~GlIPkLv~LL~d---~~~~~val~iLy~LS~dd~~ 403 (708)
T PF05804_consen 328 AESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPE-LRSQMVSLGLIPKLVELLKD---PNFREVALKILYNLSMDDEA 403 (708)
T ss_pred HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHH-HHHHHHHCCCcHHHHHHhCC---CchHHHHHHHHHHhccCHhh
Confidence 999999999999999999999999999999998876 69999999999999999942 34556789999999998755
Q ss_pred CchhhhhchHHHHHHhcc-CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh---------------------
Q 015687 234 PLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL--------------------- 291 (402)
Q Consensus 234 ~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~--------------------- 291 (402)
.......+++|.+++++- .+++.+...+++.+.|++.... ..+.+.+.|+++.|+..
T Consensus 404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~ 482 (708)
T PF05804_consen 404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR-NAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDG 482 (708)
T ss_pred HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH-HHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence 555555789999998764 4566677777777788775543 33555555555554433
Q ss_pred ----------------cCC-CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC-CchhHHHHHHHHHHHH
Q 015687 292 ----------------LRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNI 353 (402)
Q Consensus 292 ----------------L~~-~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~-~~~~v~~~a~~~L~nl 353 (402)
+.. ++++....++.+++|+...+......+.+.+++|.|..+|..+ ..+++.-+++-.++.+
T Consensus 483 ~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtl 562 (708)
T PF05804_consen 483 PLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTL 562 (708)
T ss_pred hHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 222 2556778899999999887666666666789999999999765 2457999999999998
Q ss_pred hcCCHHHHHHHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHhhcCCC
Q 015687 354 TAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 354 ~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~~~~ 400 (402)
+. ++.....+.+.|+++.|+.+|.. +|.++....++++..+..++.
T Consensus 563 a~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~ 610 (708)
T PF05804_consen 563 AS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEE 610 (708)
T ss_pred HC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChH
Confidence 86 47777888899999999999976 568899999999999987753
No 11
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=3e-17 Score=154.70 Aligned_cols=261 Identities=21% Similarity=0.345 Sum_probs=226.8
Q ss_pred cHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 72 SLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 72 ~i~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
.+.+|++.|+.. |+..|..|+..|+.+++-.+.+....+--.-++|.|+.+|+...+.++...|+++|++++..-|.-.
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 468899999976 9999999999999998877566666665666899999999998879999999999999999999999
Q ss_pred HHHHhCCchHHHHHh-hCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 151 RVVIDHGAVPIFVRL-LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 151 ~~~~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
..+++.++||.|+.- +.-+..++.++++.+|-.|+...+ ..+++.|++-..+..| +.-...+++.|+.+.+|+|.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 999999999999984 445889999999999999998876 4788999999999999 77789999999999999999
Q ss_pred CCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhcc---CChHHHHHHHHhCcHHHHHHhcCCC----ChhhHHH
Q 015687 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLRHP----SPSVLIP 302 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~~L~~~----~~~v~~~ 302 (402)
.-+...+..+...+|.|..+|++.|....+.+|-++.++++ +.++..+.+...|++....+++.-. +..+...
T Consensus 324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~ 403 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG 403 (1051)
T ss_pred cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence 98888889999999999999999999999999999999975 4667888899999999999998644 2345667
Q ss_pred HHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC
Q 015687 303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 336 (402)
Q Consensus 303 a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~ 336 (402)
.++.+..++++++-....+...++...|..+|..
T Consensus 404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 8888999999888777777777777777777743
No 12
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=1.1e-16 Score=136.46 Aligned_cols=309 Identities=12% Similarity=0.128 Sum_probs=248.6
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCC-CCHHHHHHHHHHHHHhhcCCCcchHHHHhCCch
Q 015687 81 WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTNIASGTSENTRVVIDHGAV 159 (402)
Q Consensus 81 ~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i 159 (402)
.+++....+.++.+|..+..+. ..+.+..++..++++|... ++.++....+.++..-+..+..+++.+++.++.
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~q-----pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il 191 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQ-----PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL 191 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCC-----cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence 3566777788888887775432 2355667788999998643 237888888999998888889999999999999
Q ss_pred HHHHHhhCC-CCHHHHHHHHHHHHHhhCCCc---------hhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 160 PIFVRLLSS-PTDDVREQAVWALGNVAGDSP---------KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 160 ~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~---------~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
+.+.+.|.. ....+...++|++..+..++. +....+...|++..|++.+.-..++.+...++.+|..|+-
T Consensus 192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV 271 (461)
T KOG4199|consen 192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV 271 (461)
T ss_pred HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 999987764 444677789999999986653 2346677888999999999777789999999999999987
Q ss_pred CCCCCchhhhhchHHHHHHhccCC-Ch---hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc--CCCChhhHHHH
Q 015687 230 GKPQPLFEQTRPALPALERLIHSN-DD---EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--RHPSPSVLIPA 303 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL~~~-~~---~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L--~~~~~~v~~~a 303 (402)
.+.-.......|++..++.++.+. +. +....++..|..++..+ +....+++.|+.+.++.++ ..++|.+...+
T Consensus 272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~D-svKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~ 350 (461)
T KOG4199|consen 272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSD-SVKSTIVEKGGLDKIITLALRHSDDPLVIQEV 350 (461)
T ss_pred HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCC-chHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence 755555556689999999999774 33 35567888888888544 4567899999999999987 35678899999
Q ss_pred HHHHHHhhcCChHHHHHHHhCCChHHHHHHhc-CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCH
Q 015687 304 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF 382 (402)
Q Consensus 304 ~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 382 (402)
+.+++-++-..++....+++.|+-...++.|+ ++....++++|||.+.|++..+.++...++.. +++.|+..-...++
T Consensus 351 ~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~ 429 (461)
T KOG4199|consen 351 MAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHE 429 (461)
T ss_pred HHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCc
Confidence 99999999999999999999999999999885 44356899999999999999888988888877 67888888888888
Q ss_pred HHHHHHHHHHHHhh
Q 015687 383 EIKKEAAWAISNAT 396 (402)
Q Consensus 383 ~v~~~a~~aL~nl~ 396 (402)
.+...|-.||..+-
T Consensus 430 tce~~akaALRDLG 443 (461)
T KOG4199|consen 430 TCEAAAKAALRDLG 443 (461)
T ss_pred cHHHHHHHHHHhcC
Confidence 88888888877653
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.78 E-value=5e-17 Score=153.58 Aligned_cols=320 Identities=25% Similarity=0.292 Sum_probs=243.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCc--c
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE--N 149 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~--~ 149 (402)
.+|+.+.+|.+.++..|-.|+..+..+.- .++.....+-+.|.|+.|+.+|.+.. .+++..|+++|.|+..++.. +
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcf-gd~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCF-GDNKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHh-hhHHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCccc
Confidence 68999999999999999999999988854 43555567788999999999999998 99999999999999998766 8
Q ss_pred hHHHHhCCchHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhc-cc------------hhhH
Q 015687 150 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-EH------------AKLS 215 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~-~~------------~~~~ 215 (402)
.-.+.+.++|+.++.+|.. .|.++++.+..+|+||+..+. ++..++.. .+..|...+. .. .+.+
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~-lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA-LKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH-HHHHHHHH-HHHHHHHhhcccccccCCCCcccccccce
Confidence 8899999999999999996 899999999999999998843 55555443 5555555432 11 1367
Q ss_pred HHHHHHHHHHHhhhCC-CCC-chhhhhchHHHHHHhcc------------------------------------------
Q 015687 216 MLRNATWTLSNFCRGK-PQP-LFEQTRPALPALERLIH------------------------------------------ 251 (402)
Q Consensus 216 ~~~~a~~~L~~l~~~~-~~~-~~~~~~~~l~~L~~lL~------------------------------------------ 251 (402)
+..+++.+|.|++... ... .+....|++..|+..++
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~ 469 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI 469 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence 8888999998888743 111 11222444444443332
Q ss_pred ------------------------------------------------------------CCChhHHHHHHHHHHHhccC
Q 015687 252 ------------------------------------------------------------SNDDEVLTDACWALSYLSDG 271 (402)
Q Consensus 252 ------------------------------------------------------------~~~~~v~~~a~~~l~~l~~~ 271 (402)
+.++.+.+.++.+|-|++.+
T Consensus 470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~ 549 (717)
T KOG1048|consen 470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG 549 (717)
T ss_pred cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence 11233344555566666543
Q ss_pred Ch----HHHHHH-HHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCc-----hh
Q 015687 272 TN----DKIQAV-IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK-----KS 341 (402)
Q Consensus 272 ~~----~~~~~~-~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~-----~~ 341 (402)
.. .....+ ....+++.|+++|..+++.+...++.+|.|++.+.. .+.++..++++.|+..|-.... .+
T Consensus 550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r--nk~ligk~a~~~lv~~Lp~~~~~~~~sed 627 (717)
T KOG1048|consen 550 LWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR--NKELIGKYAIPDLVRCLPGSGPSTSLSED 627 (717)
T ss_pred CCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch--hhhhhhcchHHHHHHhCcCCCCCcCchHH
Confidence 22 111222 455678999999999999999999999999997543 3446668999999999965523 67
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHhhc
Q 015687 342 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATS 397 (402)
Q Consensus 342 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~ 397 (402)
+...+|.+|.|+...+......+.+.+.++.|+.+..+ .++++-+.|...|..+-.
T Consensus 628 tv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~ 684 (717)
T KOG1048|consen 628 TVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQ 684 (717)
T ss_pred HHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 88999999999999899999999999999999999877 456888999888877643
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.74 E-value=3.5e-15 Score=142.56 Aligned_cols=316 Identities=19% Similarity=0.232 Sum_probs=246.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHH
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 153 (402)
+.+...+++.+.+....++..|.+++... .+... ..+..+.|...|.+++ +.++..+++.|++++.++......+
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l--~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~ 115 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSAL--SPDSL--LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLL 115 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHH--HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHh
Confidence 34778888888888888999999998643 22222 4557889999999988 9999999999999999877778888
Q ss_pred HhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCC
Q 015687 154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 233 (402)
Q Consensus 154 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 233 (402)
.+.++++.++.++.+++..+...|+.+|.+++...+.. +.++..+.+..|..++ ...+..++..+..++.+++...+.
T Consensus 116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~ 193 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPE 193 (503)
T ss_pred cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHH
Confidence 89999999999999999999999999999999887754 5677888888898888 555667888899999999987633
Q ss_pred C-chhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCh-----hhHHH-HHHH
Q 015687 234 P-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP-----SVLIP-ALRT 306 (402)
Q Consensus 234 ~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~-----~v~~~-a~~~ 306 (402)
. ......|+++.++..+.++|.-++.+++.++..++. .+...+.+.+.|+++.|..++.+... .+..+ .+..
T Consensus 194 ~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f 272 (503)
T PF10508_consen 194 AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF 272 (503)
T ss_pred HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence 2 233336899999999999999999999999999998 44556889999999999999965422 22333 3477
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH-HHc-C----CHHHHHHHhccC
Q 015687 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI-IEA-G----IIGPLVNLLLNA 380 (402)
Q Consensus 307 l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~-~----~i~~L~~ll~~~ 380 (402)
.|+++...+....... ..++..+..++.+. ++..+..|.-+++.|+.. .+....+ ... + ++.........+
T Consensus 273 ~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~ 349 (503)
T PF10508_consen 273 FGNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSG 349 (503)
T ss_pred HHHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCC
Confidence 7888875443332111 24556677777777 999999999999999864 5555555 332 2 344555555667
Q ss_pred CHHHHHHHHHHHHHhhcCCC
Q 015687 381 EFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 381 ~~~v~~~a~~aL~nl~~~~~ 400 (402)
..++|..++.++.++...++
T Consensus 350 ~~~lk~r~l~al~~il~~~~ 369 (503)
T PF10508_consen 350 STELKLRALHALASILTSGT 369 (503)
T ss_pred chHHHHHHHHHHHHHHhcCC
Confidence 78999999999999976554
No 15
>PRK09687 putative lyase; Provisional
Probab=99.74 E-value=1.3e-15 Score=133.88 Aligned_cols=254 Identities=16% Similarity=0.125 Sum_probs=201.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
.++.|+..|.+.+..++..++..|..+-. ..+++.+..++.+++ +.++..|+++|+.+......
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc---
Confidence 56889999999999999999999988732 225777888888888 99999999999998753211
Q ss_pred HHHhCCchHHHHHh-hCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 152 VVIDHGAVPIFVRL-LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 152 ~~~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
...+++.|..+ ++++++.|+..|+.+||+++...... ...+++.+...+ .+++..++..++++|..+..
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~- 157 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND- 157 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence 11367888876 67899999999999999996543311 111344555556 66788999999999976542
Q ss_pred CCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 015687 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (402)
Q Consensus 231 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl 310 (402)
...++.|+.+|.++++.|+..++.+|+.+....+ .+++.|+..|.+.++.|+..|+++||.+
T Consensus 158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 3578999999999999999999999999943333 2467899999999999999999999996
Q ss_pred hcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhc-cCCHHHHHHHH
Q 015687 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFEIKKEAA 389 (402)
Q Consensus 311 ~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~ 389 (402)
-. + .++|.|++.+.++ + ++..++.+|+++.. +. .+|.|..+++ ++|..++..|.
T Consensus 220 ~~--~---------~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~~---------a~p~L~~l~~~~~d~~v~~~a~ 274 (280)
T PRK09687 220 KD--K---------RVLSVLIKELKKG-T--VGDLIIEAAGELGD--KT---------LLPVLDTLLYKFDDNEIITKAI 274 (280)
T ss_pred CC--h---------hHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--Hh---------HHHHHHHHHhhCCChhHHHHHH
Confidence 42 2 5688999999876 4 68889999998854 33 6889999996 78999999999
Q ss_pred HHHHH
Q 015687 390 WAISN 394 (402)
Q Consensus 390 ~aL~n 394 (402)
++|..
T Consensus 275 ~a~~~ 279 (280)
T PRK09687 275 DKLKR 279 (280)
T ss_pred HHHhc
Confidence 99853
No 16
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=1.6e-14 Score=123.35 Aligned_cols=281 Identities=16% Similarity=0.200 Sum_probs=225.5
Q ss_pred cCcHHHHHHhh---cCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC--CCHHHHHHHHHHHHHhhCC
Q 015687 113 SGVVPRFIEFL---SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGD 187 (402)
Q Consensus 113 ~g~i~~L~~lL---~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~ 187 (402)
.|..+.++-++ .+++ ..+...++.+|..+..+.|+ +.+..+...++.+|.. ++.++....+..+..-|..
T Consensus 103 ~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~ 177 (461)
T KOG4199|consen 103 NGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIM 177 (461)
T ss_pred CCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 44444444333 3444 77888899999888876665 4566789999998864 6788888888999988988
Q ss_pred CchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCC-chh---------hhhchHHHHHHhccC-CChh
Q 015687 188 SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFE---------QTRPALPALERLIHS-NDDE 256 (402)
Q Consensus 188 ~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~---------~~~~~l~~L~~lL~~-~~~~ 256 (402)
.+.+|+.+++.++++.+...+.......+.+.++|++..|..+++-+ .+. .-.+++..|++.++- -||.
T Consensus 178 hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~ 257 (461)
T KOG4199|consen 178 HEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPD 257 (461)
T ss_pred hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCcc
Confidence 88899999999999999988866666689999999999998776322 111 114567788888865 4799
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC-h---hhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHH
Q 015687 257 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS-P---SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD 332 (402)
Q Consensus 257 v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~-~---~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ 332 (402)
+....+.+|..++-.+ +..+.+.+.|+++.|+.++.+.+ . .....++..|..++ |++.....+++.|+++.++.
T Consensus 258 ~L~~l~~tl~~lAVr~-E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~ 335 (461)
T KOG4199|consen 258 SLVSLSTTLKALAVRD-EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIIT 335 (461)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHH
Confidence 9999999999998654 45678999999999999997743 2 34567788888887 46778888999999999998
Q ss_pred Hh-cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCC--HHHHHHHHHHHHHhhcCCC
Q 015687 333 LL-TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE--FEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 333 ll-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~--~~v~~~a~~aL~nl~~~~~ 400 (402)
++ .+..+|.|..+++.+++-||-..|++-...++.|+-...++.|+... ..+|++|||++.|++.+|.
T Consensus 336 l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~ 406 (461)
T KOG4199|consen 336 LALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSA 406 (461)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhh
Confidence 77 34448999999999999999999999999999999999999998755 4699999999999998764
No 17
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.72 E-value=5.8e-16 Score=152.94 Aligned_cols=327 Identities=18% Similarity=0.193 Sum_probs=249.4
Q ss_pred hhccHHHHHHhhcCC---CHHHHHHHHHHHHHHhccCCCCch--hHHhhcCcHHHH-------HHhhcCC------CCHH
Q 015687 69 KLESLPAMVAGVWSD---DRNIQLDATTQFRKLLSIERSPPI--NEVIQSGVVPRF-------IEFLSRD------DFPQ 130 (402)
Q Consensus 69 ~~~~i~~l~~~l~s~---~~~~~~~a~~~l~~l~s~~~~~~~--~~~~~~g~i~~L-------~~lL~~~------~~~~ 130 (402)
..+.+|.+++.+..+ +.+.+..|-.+|.+++..+.+... +++--..++..+ ..+++.. ....
T Consensus 233 ~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~ 312 (2195)
T KOG2122|consen 233 RSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDE 312 (2195)
T ss_pred hccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc
Confidence 347899999999864 457888899999999865422211 121111122222 2223221 1123
Q ss_pred HHH-HHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC------------CCHHHHHHHHHHHHHhhCCCchhhHHH-H
Q 015687 131 LQF-EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS------------PTDDVREQAVWALGNVAGDSPKCRDLV-L 196 (402)
Q Consensus 131 ~~~-~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~------------~~~~v~~~a~~~L~nl~~~~~~~~~~~-~ 196 (402)
-+. .|+.+|..++.+ .+++..+-+.|++..+-.|+.- ....+|..+..+|.||..++..++..+ -
T Consensus 313 H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs 391 (2195)
T KOG2122|consen 313 HQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCS 391 (2195)
T ss_pred hhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 344 777888888886 8999999999999998887742 235789999999999998776665554 4
Q ss_pred hcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhh--hchHHHHHH-hccCCChhHHHHHHHHHHHhccCCh
Q 015687 197 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT--RPALPALER-LIHSNDDEVLTDACWALSYLSDGTN 273 (402)
Q Consensus 197 ~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~l~~L~~-lL~~~~~~v~~~a~~~l~~l~~~~~ 273 (402)
..|++..+|..| .....++....+.+|.||+...+......+ .+-+..|+. .++...+..+..++.+|+||+.+..
T Consensus 392 ~rgfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHct 470 (2195)
T KOG2122|consen 392 QRGFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCT 470 (2195)
T ss_pred hhhHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccc
Confidence 568999999999 666668888999999999988643333333 344444444 4566677888999999999998877
Q ss_pred HHHHHHHHh-CcHHHHHHhcCCCC----hhhHHHHHHHHHHhhc---CChHHHHHHHhCCChHHHHHHhcCCCchhHHHH
Q 015687 274 DKIQAVIEA-GVCPRLVELLRHPS----PSVLIPALRTVGNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE 345 (402)
Q Consensus 274 ~~~~~~~~~-~~i~~L~~~L~~~~----~~v~~~a~~~l~nl~~---~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~ 345 (402)
+....++.- |++..|+..|.... -.+.+.+-.+|.|+.. .+..+++.+.+++.|..|++.|++. +-.+..+
T Consensus 471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiVSN 549 (2195)
T KOG2122|consen 471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIVSN 549 (2195)
T ss_pred ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEeec
Confidence 666666654 89999999997652 4677887777777654 4566888889999999999999998 9999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 346 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 346 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
+|.+|+||.+.+++..+.+.+.|.++.|.+++.+.+..+..-++.+|.|+...
T Consensus 550 aCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 550 ACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred chhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999764
No 18
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.72 E-value=2.6e-14 Score=136.68 Aligned_cols=320 Identities=19% Similarity=0.229 Sum_probs=248.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
..+.+...|.++++.++..++..+.+++... ....+.+.+.++++.++.++.+++ ..+...|+.+|.+++.. +...+
T Consensus 78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~l~~~i~~~L~~~d-~~Va~~A~~~L~~l~~~-~~~~~ 154 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHS-EGAAQLLVDNELLPLIIQCLRDPD-LSVAKAAIKALKKLASH-PEGLE 154 (503)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HHHHHHhcCccHHHHHHHHHcCCc-HHHHHHHHHHHHHHhCC-chhHH
Confidence 3577788999999999999999999987543 444566788999999999999999 89999999999999986 56667
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
.+++.+.++.|..++..+++.+|-.+..++.+++..++.....+.+.|+++.++..+ .+.|.-++.+++.++..|+..+
T Consensus 155 ~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL-~~dDiLvqlnalell~~La~~~ 233 (503)
T PF10508_consen 155 QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKEL-DSDDILVQLNALELLSELAETP 233 (503)
T ss_pred HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHh-cCccHHHHHHHHHHHHHHHcCh
Confidence 788888899999999988999999999999999999999999999999999999999 5689999999999999999976
Q ss_pred CCCchhhhhchHHHHHHhccCC--Ch---h-HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHH
Q 015687 232 PQPLFEQTRPALPALERLIHSN--DD---E-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 305 (402)
Q Consensus 232 ~~~~~~~~~~~l~~L~~lL~~~--~~---~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~ 305 (402)
.........++++.|..++.+. |+ . .....+...++++...+..+-... ..++..+..++.+.+...+..|+.
T Consensus 234 ~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~d 312 (503)
T PF10508_consen 234 HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFD 312 (503)
T ss_pred hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHH
Confidence 6666666689999999999654 33 1 233444666777764333221111 245667777788899999999999
Q ss_pred HHHHhhcCChHHHHHH-HhC-C----ChHHHHHHhcCCCchhHHHHHHHHHHHHhcC----CHHHHHHHH-------HcC
Q 015687 306 TVGNIVTGDDMQTQCI-INH-Q----ALPCLLDLLTQNYKKSIKKEACWTISNITAG----NVNQIQAII-------EAG 368 (402)
Q Consensus 306 ~l~nl~~~~~~~~~~i-~~~-~----~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~----~~~~~~~l~-------~~~ 368 (402)
++|.+++.. +....+ ... + ++..+.....++ ..++|..+..+++++... ..+.+..+. ..+
T Consensus 313 tlg~igst~-~G~~~L~~~~~~~~~~~l~~~~~~~~~~-~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~ 390 (503)
T PF10508_consen 313 TLGQIGSTV-EGKQLLLQKQGPAMKHVLKAIGDAIKSG-STELKLRALHALASILTSGTDRQDNDILSITESWYESLSGS 390 (503)
T ss_pred HHHHHhCCH-HHHHHHHhhcchHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCC
Confidence 999999644 455545 332 2 344445555566 778999999999999642 122222222 123
Q ss_pred CHH-HHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 369 IIG-PLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 369 ~i~-~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
-.. .++.+++.+=+++|..|...|..++.+
T Consensus 391 ~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 391 PLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred chHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 344 777778777799999999999999876
No 19
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.71 E-value=7e-16 Score=145.93 Aligned_cols=282 Identities=20% Similarity=0.206 Sum_probs=220.5
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch--hh
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK--CR 192 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~--~~ 192 (402)
-+|..+.+|.+.+ +.+|..|+.-+-.++.++.+.+..+.+.|+|+.|+.+|.+.+.+++.+|+++|.||..+... .+
T Consensus 234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 3788899999988 89999999999999999999999999999999999999999999999999999999976654 77
Q ss_pred HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccC--------------CChhHH
Q 015687 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS--------------NDDEVL 258 (402)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~--------------~~~~v~ 258 (402)
-.+.+.++++.+++++....|.++++.++.+|+||++. +......+...++.|..-+-. .+.++.
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 88899999999999997778999999999999999988 344444556666666554311 136788
Q ss_pred HHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhcC------CCChhhHHHHHHHHHHhhcCCh-----HHH--------
Q 015687 259 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLR------HPSPSVLIPALRTVGNIVTGDD-----MQT-------- 318 (402)
Q Consensus 259 ~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~~L~------~~~~~v~~~a~~~l~nl~~~~~-----~~~-------- 318 (402)
.++..+|.|++....+..+.+.+. |.++.|+..+. +.+.+-.++|+-++.|+...-. .+.
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 999999999998776666767665 89999998874 3456677888888888864221 000
Q ss_pred ------------------HH----------------------HHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCC-
Q 015687 319 ------------------QC----------------------IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN- 357 (402)
Q Consensus 319 ------------------~~----------------------i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~- 357 (402)
.. +....++..-..+|....++.+.+.++.+|-|++++.
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 00 0011123333344443337889999999999999853
Q ss_pred --HHH-HHHH-HHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 358 --VNQ-IQAI-IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 358 --~~~-~~~l-~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
... ...+ ....++|.|+++|+.++.+|.+.++.+|.|++.+
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d 596 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD 596 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence 222 2333 3577899999999999999999999999999865
No 20
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.70 E-value=2.3e-15 Score=148.84 Aligned_cols=267 Identities=19% Similarity=0.175 Sum_probs=226.2
Q ss_pred HHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCC-----------CHHHHHHHHHHHHHhhcCCCcchHHHHh-CC
Q 015687 90 DATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-----------FPQLQFEAAWALTNIASGTSENTRVVID-HG 157 (402)
Q Consensus 90 ~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~-----------~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g 157 (402)
.|+..|.++ |.+ ++....|-+.|++..+-+||.-.. +..++..|..+|+||..++..++..+.. -|
T Consensus 317 aA~~~lMK~-SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg 394 (2195)
T KOG2122|consen 317 AALCTLMKL-SFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG 394 (2195)
T ss_pred HHHHHHHHh-hcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence 667777776 554 688889999999999888875321 2478999999999999998777777665 48
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhC-CCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC--CCC
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAG-DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQP 234 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~ 234 (402)
.+..++..|.+...++.+..+.+|.||+= -+...+..+-+.|.+..|+........+..+..++.+||||+.+. ...
T Consensus 395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA 474 (2195)
T KOG2122|consen 395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKA 474 (2195)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccch
Confidence 99999999999889999999999999983 334467788888999999998767777788999999999999887 455
Q ss_pred chhhhhchHHHHHHhccCC----ChhHHHHHHHHHHHhcc---CChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHH
Q 015687 235 LFEQTRPALPALERLIHSN----DDEVLTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307 (402)
Q Consensus 235 ~~~~~~~~l~~L~~lL~~~----~~~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l 307 (402)
.+..+.|++-+|+.+|... .-.|++.+-.+|.|++. ..++..+.+.+.+++..|+..|++.+-.+..++|.+|
T Consensus 475 ~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTL 554 (2195)
T KOG2122|consen 475 EICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTL 554 (2195)
T ss_pred hhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhh
Confidence 6677799999999999654 45688888888877653 4556678899999999999999999999999999999
Q ss_pred HHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH
Q 015687 308 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359 (402)
Q Consensus 308 ~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~ 359 (402)
+||...+++..+++++.|.++.|..++.+. ...+-..++.+|.|+....|.
T Consensus 555 WNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~RPA 605 (2195)
T KOG2122|consen 555 WNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFRPA 605 (2195)
T ss_pred hhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCCch
Confidence 999999999999999999999999999998 889999999999999986543
No 21
>PRK09687 putative lyase; Provisional
Probab=99.68 E-value=7.8e-15 Score=129.01 Aligned_cols=227 Identities=14% Similarity=0.122 Sum_probs=181.6
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHH
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (402)
-++.|..+|.+.+ ..++..|+++|..+... .+++.+..++.++++.+|..++++|+.+-.....
T Consensus 24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~~-----------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 24 NDDELFRLLDDHN-SLKRISSIRVLQLRGGQ-----------DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred cHHHHHHHHhCCC-HHHHHHHHHHHHhcCcc-----------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 3788999999988 89999999999987642 4678888899999999999999999998543211
Q ss_pred HHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChH
Q 015687 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 274 (402)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~ 274 (402)
....++.|..++..++++.++..++.+|.+++...+.. ...+++.+...+.++++.|+..++++|+.+.. .
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~- 158 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E- 158 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H-
Confidence 11256677777658889999999999999997654222 23456667788888999999999999987642 1
Q ss_pred HHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 015687 275 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354 (402)
Q Consensus 275 ~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 354 (402)
..++.|+.+|.++++.++..|+.+||.+..+++ .+++.|+..+.+. ++.||..|+|.|+.+-
T Consensus 159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALRK 220 (280)
T ss_pred --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccC
Confidence 247899999999999999999999999954444 4566799999888 9999999999999863
Q ss_pred cCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 355 AGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 355 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
++. ++|.|+..|++++ ++..|+.+|+++..
T Consensus 221 --~~~---------av~~Li~~L~~~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 221 --DKR---------VLSVLIKELKKGT--VGDLIIEAAGELGD 250 (280)
T ss_pred --Chh---------HHHHHHHHHcCCc--hHHHHHHHHHhcCC
Confidence 333 6889999998766 67889999998754
No 22
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.65 E-value=8.9e-15 Score=128.76 Aligned_cols=309 Identities=16% Similarity=0.154 Sum_probs=222.1
Q ss_pred CHHHHHHHHHHHHHHhccC--CCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHH
Q 015687 84 DRNIQLDATTQFRKLLSIE--RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPI 161 (402)
Q Consensus 84 ~~~~~~~a~~~l~~l~s~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 161 (402)
+..+...+..++......+ ++...+.-++.+++..|.+..++++ .++..+..++|+|+|.++.+.|..+.+.|+-..
T Consensus 55 ~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqi 133 (604)
T KOG4500|consen 55 SDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQI 133 (604)
T ss_pred cchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCcee
Confidence 3444444455555553211 1222333456788888888888887 899999999999999999999999999999888
Q ss_pred HHHhhCC-------CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhc-cchhhHHHHHHHHHHHHhhhCCC-
Q 015687 162 FVRLLSS-------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKP- 232 (402)
Q Consensus 162 L~~lL~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~-~~~~~~~~~~a~~~L~~l~~~~~- 232 (402)
++.+|+. .+.+....+...|.|..-++.+.+..+++.|+++.|...+. ...+....+.....+.|+.+-..
T Consensus 134 vid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e 213 (604)
T KOG4500|consen 134 VIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCE 213 (604)
T ss_pred hHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHH
Confidence 8887764 23467778889999999999999999999999999988873 23444444554444444433211
Q ss_pred -CCchhhhhchHHHHHHhccC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CC-------hhhHHH
Q 015687 233 -QPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PS-------PSVLIP 302 (402)
Q Consensus 233 -~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~-~~-------~~v~~~ 302 (402)
-.++.....+.-.++++|.. -.+++.+-++..+.+.++++.-. -.+.+.|.+..+++++.. .. -.....
T Consensus 214 ~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~ 292 (604)
T KOG4500|consen 214 MLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKR 292 (604)
T ss_pred hhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHHHHHh
Confidence 12222223445556666644 35667778888889988776544 447888999999988854 21 123334
Q ss_pred HHHHHHHhhcCChHHHHHHHhCC-ChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc--
Q 015687 303 ALRTVGNIVTGDDMQTQCIINHQ-ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-- 379 (402)
Q Consensus 303 a~~~l~nl~~~~~~~~~~i~~~~-~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-- 379 (402)
++..+.-+..|++ ..+++...+ +++.+...+.+. +....-.+..+++|++..+ ++...+++.|.+..|++++..
T Consensus 293 ~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D-~~ci~~v~~~~~nkL~~~l~~~~ 369 (604)
T KOG4500|consen 293 IAELDVLLLTGDE-SMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRD-DICIQLVQKDFLNKLISCLMQEK 369 (604)
T ss_pred hhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444545555544 556666555 899999999999 9999999999999999864 556678899999999999853
Q ss_pred ---CCHHHHHHHHHHHHHhhc
Q 015687 380 ---AEFEIKKEAAWAISNATS 397 (402)
Q Consensus 380 ---~~~~v~~~a~~aL~nl~~ 397 (402)
++..++..++.||.|++.
T Consensus 370 ~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 370 DVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred CCCccchhHHHHHHHHHhccc
Confidence 678899999999999875
No 23
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=3.1e-15 Score=137.98 Aligned_cols=318 Identities=19% Similarity=0.246 Sum_probs=210.7
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhH-Hhh---cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCC
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINE-VIQ---SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT 146 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~-~~~---~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~ 146 (402)
+.+|.|.+.|.++|...+.-|..+|.++.... ....+. +.. .-.+|.|+++.++++ +.+|..|+.|+..+.-..
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs-a~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDS-AQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhh-HHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeecC
Confidence 35799999999999989999999999986432 111110 000 125899999999998 999999999998876543
Q ss_pred CcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHH
Q 015687 147 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (402)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~ 226 (402)
++....-++ ..++.+..+-.+++++||.+.+.++..|..-.+. +-.-.-.++++.++... ++.|+.+.-.||.++..
T Consensus 206 ~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d-kl~phl~~IveyML~~t-qd~dE~VALEACEFwla 282 (885)
T KOG2023|consen 206 TQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPD-KLVPHLDNIVEYMLQRT-QDVDENVALEACEFWLA 282 (885)
T ss_pred cHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH-hcccchHHHHHHHHHHc-cCcchhHHHHHHHHHHH
Confidence 333222222 4567777777889999999999999999865542 11111224566666665 67788899999999999
Q ss_pred hhhCCCCC--chhhhhchHHHHHHhccCCChhH--HH-------------------------------------------
Q 015687 227 FCRGKPQP--LFEQTRPALPALERLIHSNDDEV--LT------------------------------------------- 259 (402)
Q Consensus 227 l~~~~~~~--~~~~~~~~l~~L~~lL~~~~~~v--~~------------------------------------------- 259 (402)
++...... -......++|+|+.-+..++.++ ..
T Consensus 283 ~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD 362 (885)
T KOG2023|consen 283 LAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD 362 (885)
T ss_pred HhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence 99885111 12344677777776443221110 00
Q ss_pred ---HHHHHHHHhccCChHHHHHHHHhCcH----HHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhC--CChHHH
Q 015687 260 ---DACWALSYLSDGTNDKIQAVIEAGVC----PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH--QALPCL 330 (402)
Q Consensus 260 ---~a~~~l~~l~~~~~~~~~~~~~~~~i----~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~--~~l~~L 330 (402)
..-|-|..++...-+....+....++ |.|-+.|.++.+.+++.++.++|.++.|.-.. +..+ .++|.+
T Consensus 363 dD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g---~~p~LpeLip~l 439 (885)
T KOG2023|consen 363 DDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQG---FVPHLPELIPFL 439 (885)
T ss_pred ccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhh---cccchHHHHHHH
Confidence 01133333322222222223333344 44555567889999999999999999875432 3332 468999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 331 LDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 331 ~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
+.+|++. .+-||.-+||+|+..+.. ..+..+..... ++..|++.+-+++.+||++||.|+..+-+.
T Consensus 440 ~~~L~DK-kplVRsITCWTLsRys~wv~~~~~~~~f~p-vL~~ll~~llD~NK~VQEAAcsAfAtleE~ 506 (885)
T KOG2023|consen 440 LSLLDDK-KPLVRSITCWTLSRYSKWVVQDSRDEYFKP-VLEGLLRRLLDSNKKVQEAACSAFATLEEE 506 (885)
T ss_pred HHHhccC-ccceeeeeeeeHhhhhhhHhcCChHhhhHH-HHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 9999998 999999999999988752 11112222222 566667777789999999999999887654
No 24
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.64 E-value=1.1e-14 Score=112.48 Aligned_cols=118 Identities=34% Similarity=0.507 Sum_probs=111.3
Q ss_pred HHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH
Q 015687 279 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358 (402)
Q Consensus 279 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 358 (402)
+++.|+++.+++++.+.++.++..+++++++++...+.....+++.|++|.+.+++.++ ++.++..++|+|+|++.+.+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence 56789999999999999999999999999999999888889899999999999999998 99999999999999999888
Q ss_pred HHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 359 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 359 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
.....+.+.|+++.|++++.+++.++++.|+|+|.|++.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 888888899999999999999999999999999999974
No 25
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.63 E-value=4.2e-14 Score=121.58 Aligned_cols=197 Identities=19% Similarity=0.239 Sum_probs=164.1
Q ss_pred HhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc
Q 015687 110 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 189 (402)
Q Consensus 110 ~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~ 189 (402)
.++.+-++.|+.+|+..+++.++..++.++++.+.. +..+..+.+.|+++.+..+|.++++.+++.|+++|.|++.+.+
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence 356667899999999776699999999999998775 8899999999999999999999999999999999999998876
Q ss_pred hhhHHHHhcCChHHHHHHhccc-hhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHh
Q 015687 190 KCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 268 (402)
Q Consensus 190 ~~~~~~~~~g~i~~L~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l 268 (402)
.+..+-. .++.+++.+... -+..++..++.+|.||+..... ...+...+|.++++|.+++..++..++++|.||
T Consensus 87 -n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 87 -NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred -hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3444432 566777655343 4788999999999999866322 333467899999999999999999999999999
Q ss_pred ccCChHHHHHHHHhCcHHHHHHhcCCC-ChhhHHHHHHHHHHhhcC
Q 015687 269 SDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTG 313 (402)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~L~~~L~~~-~~~v~~~a~~~l~nl~~~ 313 (402)
+..+. ....++..+++..++.++... +.++...++..+.|+..+
T Consensus 162 S~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 162 SENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred ccCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 97765 456788889999999999765 678899999999999654
No 26
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=5.2e-13 Score=119.38 Aligned_cols=322 Identities=14% Similarity=0.166 Sum_probs=243.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
-+..+++.|..++.++.......|.++ |.- .++...+.+.|++..|++++...+ ++++...+..+.|++.+ ...+.
T Consensus 305 iV~mLVKaLdr~n~~Ll~lv~~FLkKL-SIf-~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSFD-~glr~ 380 (791)
T KOG1222|consen 305 IVAMLVKALDRSNSSLLTLVIKFLKKL-SIF-DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSFD-SGLRP 380 (791)
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHh-hhh-ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhcccc-ccccH
Confidence 467889999999988888888888887 443 567778999999999999999998 99999999999999986 78899
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
.++..|.+|.+..++.+... ...|+..+..++.++. .+..+....+++.+...+..+.+..+-.......-|||-+.
T Consensus 381 KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk 457 (791)
T KOG1222|consen 381 KMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK 457 (791)
T ss_pred HHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc
Confidence 99999999999999986432 3457788888887765 57777777788888887756666665555555555666554
Q ss_pred CCCchhhhh-------------------------------------chHHHHHHhcc-CCChhHHHHHHHHHHHhccCCh
Q 015687 232 PQPLFEQTR-------------------------------------PALPALERLIH-SNDDEVLTDACWALSYLSDGTN 273 (402)
Q Consensus 232 ~~~~~~~~~-------------------------------------~~l~~L~~lL~-~~~~~v~~~a~~~l~~l~~~~~ 273 (402)
.+.+..... ..+..|...+. +++++....++.+++++.-.+-
T Consensus 458 RNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dl 537 (791)
T KOG1222|consen 458 RNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDL 537 (791)
T ss_pred ccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCC
Confidence 322221111 11112222232 2345677788899999987666
Q ss_pred HHHHHHHHhCcHHHHHHhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC-CchhHHHHHHHHH
Q 015687 274 DKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTI 350 (402)
Q Consensus 274 ~~~~~~~~~~~i~~L~~~L~~~--~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~-~~~~v~~~a~~~L 350 (402)
+..+.+.+..++|.+-..|... ..++....+.++|-++.. ......+..+|+++.++++|+.. ++.++.....+++
T Consensus 538 dw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF 616 (791)
T KOG1222|consen 538 DWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVF 616 (791)
T ss_pred CHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHH
Confidence 6766677778999999988643 345677777788887764 33555566779999999999764 3567778888888
Q ss_pred HHHhcCCHHHHHHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCCCCC
Q 015687 351 SNITAGNVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSSW 402 (402)
Q Consensus 351 ~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~ 402 (402)
..+..+ ...+..++ +...-..|++++++.+..+|+.+-.+|.-++.+...|
T Consensus 617 ~Q~l~H-e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EW 668 (791)
T KOG1222|consen 617 LQFLKH-ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEW 668 (791)
T ss_pred HHHHHH-HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHH
Confidence 888876 44455555 5667789999999999999999999999999988877
No 27
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.60 E-value=1.6e-13 Score=118.02 Aligned_cols=227 Identities=20% Similarity=0.232 Sum_probs=179.3
Q ss_pred HhCCchHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC
Q 015687 154 IDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (402)
Q Consensus 154 ~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 232 (402)
.+.+-++.|+.+|+. .++.+++.++.+++|.+..+ ..++.+.+.|+++.+..++ .++++.++..|++++.|++...+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL-~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLL-NDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHc-CCCChHHHHHHHHHHHhcCCChh
Confidence 566778999999985 78999999999999987765 4799999999999999999 77899999999999999998743
Q ss_pred CCchhhhhchHHHHHHhccC--CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 015687 233 QPLFEQTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (402)
Q Consensus 233 ~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl 310 (402)
+. ..+...++.+.+.+.+ -|.+++..++++|.+|+..++. +.++ .+.++.++.+|.+++..++..++++|.|+
T Consensus 87 n~--~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 87 NQ--EQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred hH--HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 33 3344567766665533 3788999999999999865543 3344 34689999999999999999999999999
Q ss_pred hcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC--CH-----------HHHHHHH-HcC-CHHHHHH
Q 015687 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG--NV-----------NQIQAII-EAG-IIGPLVN 375 (402)
Q Consensus 311 ~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~--~~-----------~~~~~l~-~~~-~i~~L~~ 375 (402)
+.. +..+..++..+++..++.+++.+.+.++...+.+.+.||..+ .+ +....++ +.+ +...|..
T Consensus 162 S~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~ 240 (254)
T PF04826_consen 162 SEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQA 240 (254)
T ss_pred ccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHH
Confidence 985 556778999999999999998876788999999999999653 11 1112222 222 5667777
Q ss_pred HhccCCHHHHHHH
Q 015687 376 LLLNAEFEIKKEA 388 (402)
Q Consensus 376 ll~~~~~~v~~~a 388 (402)
+...+|++||..+
T Consensus 241 l~~h~d~ev~~~v 253 (254)
T PF04826_consen 241 LANHPDPEVKEQV 253 (254)
T ss_pred HHcCCCHHHhhhc
Confidence 7777888888653
No 28
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.59 E-value=3.2e-14 Score=109.90 Aligned_cols=119 Identities=35% Similarity=0.621 Sum_probs=111.0
Q ss_pred HHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 015687 109 EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 188 (402)
Q Consensus 109 ~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~ 188 (402)
.+++.|+++.|++++.+++ +.++..++++|++++.++++....+++.|+++.++.++.++++.++..++|+|+|++.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 4668899999999999988 899999999999999988899999999999999999999999999999999999999998
Q ss_pred chhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 189 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 189 ~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
+..+..+.+.|+++.++..+ ...+..+++.++|+|.+|+.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 87888889999999999999 66688999999999999974
No 29
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.58 E-value=1.2e-12 Score=134.14 Aligned_cols=259 Identities=19% Similarity=0.201 Sum_probs=169.9
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
.++.|++.|.++++.++..|+..|..+.. .+.++.|+..|.+++ +.++..|+..|..+....+
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~---- 684 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP---- 684 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC----
Confidence 56889999999999999999999988732 225788899998887 8999999999988754211
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc------------hhhHH----HHhcCChHHHHHHhccchhhH
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP------------KCRDL----VLSNGALMPLLAQFNEHAKLS 215 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~------------~~~~~----~~~~g~i~~L~~~l~~~~~~~ 215 (402)
..+.|...|.++++.+|..++.+|+.+....+ ..|.. +...+..+.|...+ .+++..
T Consensus 685 ------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l-~D~~~~ 757 (897)
T PRK13800 685 ------PAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAA-TDENRE 757 (897)
T ss_pred ------chHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHh-cCCCHH
Confidence 12344555555556666666555555421110 00000 00001122333444 455556
Q ss_pred HHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC
Q 015687 216 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 295 (402)
Q Consensus 216 ~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~ 295 (402)
++..++.+|..+....+ ..++.|..++.++|+.++..++.+|..+..... +.+.+...|.++
T Consensus 758 VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~----------~~~~l~~aL~d~ 819 (897)
T PRK13800 758 VRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAAALAALAELGCPPD----------DVAAATAALRAS 819 (897)
T ss_pred HHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcch----------hHHHHHHHhcCC
Confidence 66666666655543311 225667777777777777777777777643211 124566677777
Q ss_pred ChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH
Q 015687 296 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVN 375 (402)
Q Consensus 296 ~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ 375 (402)
++.+|..|+.+|+.+.. ...++.|..+|.++ +..||..|+++|+.+ .+++. ..+.|..
T Consensus 820 d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~-~~~VR~~A~~aL~~~-~~~~~---------a~~~L~~ 877 (897)
T PRK13800 820 AWQVRQGAARALAGAAA-----------DVAVPALVEALTDP-HLDVRKAAVLALTRW-PGDPA---------ARDALTT 877 (897)
T ss_pred ChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCC-CHHHHHHHHHHHhcc-CCCHH---------HHHHHHH
Confidence 77888888888876642 13457899999988 999999999999987 33344 3566778
Q ss_pred HhccCCHHHHHHHHHHHHH
Q 015687 376 LLLNAEFEIKKEAAWAISN 394 (402)
Q Consensus 376 ll~~~~~~v~~~a~~aL~n 394 (402)
.+++.+.+||.+|..+|..
T Consensus 878 al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 878 ALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHhCCCHHHHHHHHHHHhh
Confidence 8999999999999999864
No 30
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=4.6e-12 Score=124.66 Aligned_cols=321 Identities=19% Similarity=0.208 Sum_probs=224.3
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
-++-+.+..+|+++..+..|+..|..+...-.+.....+ ..+.+.|.+.+.+++. .++..|+++++.++...+..+.
T Consensus 119 ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~-~vr~~a~rA~~a~~~~~~~~~~ 195 (1075)
T KOG2171|consen 119 LLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPSS-PVRVAAVRALGAFAEYLENNKS 195 (1075)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHhccchH
Confidence 356667777899999999999999988543211111111 1256777888888874 4999999999998876543332
Q ss_pred HHHh-CCchHHHHHhh----CCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc-chhhHHHHHHHHHHH
Q 015687 152 VVID-HGAVPIFVRLL----SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLS 225 (402)
Q Consensus 152 ~~~~-~g~i~~L~~lL----~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~-~~~~~~~~~a~~~L~ 225 (402)
.... ...+|.++..+ ...+.+....++.+|..++...|.+-...+.. ++...+.+..+ .-+..++..|+.++.
T Consensus 196 ~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~-ii~~~l~Ia~n~~l~~~~R~~ALe~iv 274 (1075)
T KOG2171|consen 196 EVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ-IIQFSLEIAKNKELENSIRHLALEFLV 274 (1075)
T ss_pred HHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH-HHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 2222 13455555544 45677777788888888887666443222221 34444444422 235666666666666
Q ss_pred HhhhCCCCCc----------------------------------------------------------hhhhhchHHHHH
Q 015687 226 NFCRGKPQPL----------------------------------------------------------FEQTRPALPALE 247 (402)
Q Consensus 226 ~l~~~~~~~~----------------------------------------------------------~~~~~~~l~~L~ 247 (402)
.+++..|... ......+++.+-
T Consensus 275 s~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~ 354 (1075)
T KOG2171|consen 275 SLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALE 354 (1075)
T ss_pred HHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHH
Confidence 6655411000 001123445555
Q ss_pred HhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCCh
Q 015687 248 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQAL 327 (402)
Q Consensus 248 ~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l 327 (402)
.++.+.+..-+..++.+|+.++.+..+.....+ ..+++.++..|.++.+.||..|+.++|.+++.-....+.-....++
T Consensus 355 ~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~ 433 (1075)
T KOG2171|consen 355 AMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLP 433 (1075)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhcc
Confidence 667888888999999999999999887655433 3578888888999999999999999999999877777777778899
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHH-HHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 328 PCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIG-PLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 328 ~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~-~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
|.|+..+.+..++.|+..|+-++.|+..+ ..+.+...++. ++. .|..+++++.+.+++.|..+|+..|..
T Consensus 434 ~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~-lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 434 PALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDG-LMEKKLLLLLQSSKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred HHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH-HHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 99999999887889999999999999984 55556666654 666 555556678899999999999998764
No 31
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.54 E-value=5.7e-12 Score=111.34 Aligned_cols=323 Identities=13% Similarity=0.052 Sum_probs=243.6
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCC---C---CHHHHHHHHHHHHHhhc
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD---D---FPQLQFEAAWALTNIAS 144 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~---~---~~~~~~~a~~~L~~l~~ 144 (402)
+.+..+.+...|+|.++-.+..++|.++...+ ++.+..+.+.|+-..+++.|+.. + +.+....+...|.|..-
T Consensus 87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 45677888888898999999999999996654 88889999999977777777642 1 24566677888999998
Q ss_pred CCCcchHHHHhCCchHHHHHhhC--CCCHHHHHHHHHHHHHhhCC-CchhhHHHHhcCChHHHHHHhccchhhHHHHHHH
Q 015687 145 GTSENTRVVIDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT 221 (402)
Q Consensus 145 ~~~~~~~~~~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~ 221 (402)
++.+.+..+.+.|+++.|...+. -.+....+...-..+|+..- .+...+...+......+++++.....+++...+.
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 88999999999999999988765 36777888888888887642 2223455666677888888886667888888899
Q ss_pred HHHHHhhhCCCCCchhhhhchHHHHHHhccC-C-------ChhHHHHHHHHHHHhccCChHHHHHHHHhC-cHHHHHHhc
Q 015687 222 WTLSNFCRGKPQPLFEQTRPALPALERLIHS-N-------DDEVLTDACWALSYLSDGTNDKIQAVIEAG-VCPRLVELL 292 (402)
Q Consensus 222 ~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~-~-------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-~i~~L~~~L 292 (402)
..|...+.++...-...-.|.+..+..+++. . +......++....-+..+++. .+.+...+ +++.+..++
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeS-Mq~L~~~p~~l~~~~sw~ 324 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDES-MQKLHADPQFLDFLESWF 324 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchH-HHHHhcCcHHHHHHHHHh
Confidence 9999988886333333335677777777644 1 123344455555555555554 46677666 899999999
Q ss_pred CCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC----CchhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 015687 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN----YKKSIKKEACWTISNITAGNVNQIQAIIEAG 368 (402)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 368 (402)
.+++......+.-+|||++..++ ....+++.|++..|+.++... .+..++..++.+|.|++-- ......++..|
T Consensus 325 ~S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP-v~nka~~~~aG 402 (604)
T KOG4500|consen 325 RSDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP-VSNKAHFAPAG 402 (604)
T ss_pred cCCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc-CCchhhccccc
Confidence 99999999999999999999666 455577889999999988542 1456778889999999873 23356788899
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 369 IIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 369 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
+.+.++..++...|.++..-..++.-+..
T Consensus 403 vteaIL~~lk~~~ppv~fkllgTlrM~~d 431 (604)
T KOG4500|consen 403 VTEAILLQLKLASPPVTFKLLGTLRMIRD 431 (604)
T ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHHh
Confidence 99999999999888887776666665544
No 32
>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....
Probab=99.54 E-value=2e-15 Score=109.55 Aligned_cols=88 Identities=45% Similarity=0.624 Sum_probs=60.3
Q ss_pred CCccHHHhhhccC-CCCchHHhhhhHHHHHHHHHHhhhHHHHhhhhccccCCCCCc-c---hh-hhhhhhhccHHHHHHh
Q 015687 6 NARTEVRRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT-N---SA-ALDNKKLESLPAMVAG 79 (402)
Q Consensus 6 ~~~~~~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~~~~kr~~~~~~~~~~~-~---~~-~~~~~~~~~i~~l~~~ 79 (402)
+...+.|++.||+ |++++|+|+||+++.|+|||+||+|.|.|||++........+ . .. .........+|.++..
T Consensus 3 ~~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~ 82 (97)
T PF01749_consen 3 SKKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVAG 82 (97)
T ss_dssp ----GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHHH
T ss_pred ccCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHHh
Confidence 4467789999999 699999999999999999999999999999998654433211 0 01 1012223467899999
Q ss_pred hcCCCHHHHHHHHH
Q 015687 80 VWSDDRNIQLDATT 93 (402)
Q Consensus 80 l~s~~~~~~~~a~~ 93 (402)
+.|+|+..++.|..
T Consensus 83 v~S~d~~~ql~Atq 96 (97)
T PF01749_consen 83 VNSDDPEVQLEATQ 96 (97)
T ss_dssp HTSSCHHHHHHHHH
T ss_pred cCCCCHHHHHHhhC
Confidence 99999999999875
No 33
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.53 E-value=1.5e-11 Score=112.65 Aligned_cols=320 Identities=11% Similarity=0.083 Sum_probs=225.7
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHhh-----cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCC
Q 015687 73 LPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQ-----SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT 146 (402)
Q Consensus 73 i~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~-----~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~ 146 (402)
...+++.+.. ..++.....+..+..++... +.....+.+ .+....++.+|..++ ..++..|+.+|+.++...
T Consensus 55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhcC
Confidence 4566677764 55778888888888888753 333344544 356678888998877 799999999999998754
Q ss_pred CcchHHHHhCCchHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccch-hhHHHHHHHHHH
Q 015687 147 SENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-KLSMLRNATWTL 224 (402)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~-~~~~~~~a~~~L 224 (402)
+.........-.++.|...+.+ .+...+..++.+|..+....+ +|..+.+.++++.|+.+|.... +.+++..++.++
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 4332211111133455555554 347778888999999987766 7999999999999999996555 678999999999
Q ss_pred HHhhhCCCCCchhhhhchHHHHHHhccCC-ChhHHHHHHHHHHHhccCC------hHHHHHHHHhCcHHHHHHhcCC---
Q 015687 225 SNFCRGKPQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGT------NDKIQAVIEAGVCPRLVELLRH--- 294 (402)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~l~~l~~~~------~~~~~~~~~~~~i~~L~~~L~~--- 294 (402)
+-|+...+........+++|.++.+++.. .+++..-++.++.|+...+ ......+++.|+.+ ++..|..
T Consensus 212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~ 290 (429)
T cd00256 212 WLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKY 290 (429)
T ss_pred HHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCCC
Confidence 99998864333333468999999999765 6789999999999998643 12334567777655 4444432
Q ss_pred CChhhHHHHHHHHHHh--------hc--------------CCh---------HHHHHHHhC--CChHHHHHHhcCCCchh
Q 015687 295 PSPSVLIPALRTVGNI--------VT--------------GDD---------MQTQCIINH--QALPCLLDLLTQNYKKS 341 (402)
Q Consensus 295 ~~~~v~~~a~~~l~nl--------~~--------------~~~---------~~~~~i~~~--~~l~~L~~ll~~~~~~~ 341 (402)
.|+++.. .+..+... ++ -+| ++...+.+. .++..|+++|..+.++.
T Consensus 291 ~DedL~e-dl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~ 369 (429)
T cd00256 291 DDEDLTD-DLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI 369 (429)
T ss_pred CcHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence 2333221 11111111 11 011 222333333 45788999996554888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 342 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 342 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
+..-||.=++.++.+.|.....+-+-|+=..+++++.++|++|+.+|+.|+..+..
T Consensus 370 ~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 370 ILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred eeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999888877777789999999999999999999999999988754
No 34
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=7.3e-12 Score=123.27 Aligned_cols=318 Identities=16% Similarity=0.170 Sum_probs=224.4
Q ss_pred HHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 74 PAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 74 ~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
..++..+.++ .+.++..-+..+..+++.. -+. --.++++.|.+..++++ +..|+.|+.+|..+...-...-..
T Consensus 82 s~lL~~~~~E~~~~vr~k~~dviAeia~~~-l~e----~WPell~~L~q~~~S~~-~~~rE~al~il~s~~~~~~~~~~~ 155 (1075)
T KOG2171|consen 82 SSLLEIIQSETEPSVRHKLADVIAEIARND-LPE----KWPELLQFLFQSTKSPN-PSLRESALLILSSLPETFGNTLQP 155 (1075)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhc-ccc----chHHHHHHHHHHhcCCC-cchhHHHHHHHHhhhhhhccccch
Confidence 4566666664 4677777778888887654 222 22447888999999998 899999999999988753332221
Q ss_pred HHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhc-CChHHHHHHhc---cchhhHHHHHHHHHHHHhh
Q 015687 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN-GALMPLLAQFN---EHAKLSMLRNATWTLSNFC 228 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~-g~i~~L~~~l~---~~~~~~~~~~a~~~L~~l~ 228 (402)
.+. .+.+.|.+-+.+++..||-.++++++.++...+......... ..+|.++..+. +..|.+....+..+|..+.
T Consensus 156 ~~~-~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~ 234 (1075)
T KOG2171|consen 156 HLD-DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELL 234 (1075)
T ss_pred hHH-HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHH
Confidence 121 355666667777777799999999999986553222222221 25676777663 3456667788888888888
Q ss_pred hCCCCCchhhhhchHHHHHHhccCC--ChhHHHHHHHHHHHhccCChHHHH-----------------------------
Q 015687 229 RGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQ----------------------------- 277 (402)
Q Consensus 229 ~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l~~l~~~~~~~~~----------------------------- 277 (402)
...|..-......++.....+..+. ++.+|..|+..+..++...+...+
T Consensus 235 e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~ 314 (1075)
T KOG2171|consen 235 ESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNE 314 (1075)
T ss_pred hhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccc
Confidence 8766555555566666666666544 566777777666655542110000
Q ss_pred ----------------HHHH-----hC---c----HHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHH
Q 015687 278 ----------------AVIE-----AG---V----CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPC 329 (402)
Q Consensus 278 ----------------~~~~-----~~---~----i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~ 329 (402)
..++ -| + ++.+-.++.++++.-|..++.+|+.++.|..+.....++ .+++.
T Consensus 315 d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~ 393 (1075)
T KOG2171|consen 315 DDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPI 393 (1075)
T ss_pred cccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHH
Confidence 0011 01 2 344445568899999999999999999999888776555 78999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHhhcCCC
Q 015687 330 LLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 330 L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~ 400 (402)
++..|+++ .|.||-.||.+++.++.+-...++.-...-++|.|+..+.+ .+++|+..|+.++-|+.....
T Consensus 394 Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~ 464 (1075)
T KOG2171|consen 394 VLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD 464 (1075)
T ss_pred HHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc
Confidence 99999999 99999999999999999766667777766688899999987 567999999999999987653
No 35
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.45 E-value=8.8e-11 Score=109.19 Aligned_cols=321 Identities=16% Similarity=0.163 Sum_probs=214.0
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhcCCCcchHHH
Q 015687 75 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRVV 153 (402)
Q Consensus 75 ~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~ 153 (402)
.++..+...+|+....|.....+.+.+. +++...+++.|.++.++.+++..+ ..+.+.+.+-++...+.+.......+
T Consensus 13 ~~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv 91 (678)
T KOG1293|consen 13 DLLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV 91 (678)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence 3445556778888888999999987765 566667999999999999998654 35777778888888888888889999
Q ss_pred HhCCchHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhhHHH---HhcCChHHHHHHhccchhhHHHHHHHH-------
Q 015687 154 IDHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKCRDLV---LSNGALMPLLAQFNEHAKLSMLRNATW------- 222 (402)
Q Consensus 154 ~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~~~~~---~~~g~i~~L~~~l~~~~~~~~~~~a~~------- 222 (402)
.+.+.++.|.+++.+++ ..+++..+.++.++...++. .+.. ....++..+..++ ..+.......-+.
T Consensus 92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~-q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~ 169 (678)
T KOG1293|consen 92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKY-QDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSS 169 (678)
T ss_pred HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccc-cccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccc
Confidence 99999999999999988 89999999999999866542 1211 1112233333222 1111111111111
Q ss_pred -------------------------------HHHHhhhCC----CCCch-hhh------hchHH--HHHHhccCCChhHH
Q 015687 223 -------------------------------TLSNFCRGK----PQPLF-EQT------RPALP--ALERLIHSNDDEVL 258 (402)
Q Consensus 223 -------------------------------~L~~l~~~~----~~~~~-~~~------~~~l~--~L~~lL~~~~~~v~ 258 (402)
++..++++. .++.. ... .++.+ .+.+++++.+...+
T Consensus 170 ~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~ 249 (678)
T KOG1293|consen 170 TKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSER 249 (678)
T ss_pred cchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHH
Confidence 222222211 01111 111 11111 12223333333333
Q ss_pred HHHHHHHHHhccCC------------------------------------------------------------------
Q 015687 259 TDACWALSYLSDGT------------------------------------------------------------------ 272 (402)
Q Consensus 259 ~~a~~~l~~l~~~~------------------------------------------------------------------ 272 (402)
-.++.++.++...+
T Consensus 250 l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~ 329 (678)
T KOG1293|consen 250 LRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKT 329 (678)
T ss_pred HHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhh
Confidence 33444443332200
Q ss_pred -------------------------------------------------------------hHHHH-------------H
Q 015687 273 -------------------------------------------------------------NDKIQ-------------A 278 (402)
Q Consensus 273 -------------------------------------------------------------~~~~~-------------~ 278 (402)
.+... .
T Consensus 330 ~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~ 409 (678)
T KOG1293|consen 330 TTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVS 409 (678)
T ss_pred HHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHH
Confidence 00000 0
Q ss_pred HH-----HhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHH
Q 015687 279 VI-----EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353 (402)
Q Consensus 279 ~~-----~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl 353 (402)
.. ...+.+++++++..++..+...++.+|.|++..-......++..|+++.+..++.+. ++.+|..+.|+|.++
T Consensus 410 aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~-~~n~r~~~~~~Lr~l 488 (678)
T KOG1293|consen 410 ALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDP-DFNSRANSLWVLRHL 488 (678)
T ss_pred HHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCC-CchHHHHHHHHHHHH
Confidence 01 224677888888888888999999999999987777788899999999999999999 999999999999999
Q ss_pred hcCCHHHHHHHHHcCC-HHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 354 TAGNVNQIQAIIEAGI-IGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 354 ~~~~~~~~~~l~~~~~-i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
.-++.+..+......+ ...+..+.+++++.|++.+...+.|++-++
T Consensus 489 ~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 489 MFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred HhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 9876666555444333 456667778899999999999999998763
No 36
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=5.6e-12 Score=116.82 Aligned_cols=273 Identities=15% Similarity=0.182 Sum_probs=192.6
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHh----CCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc
Q 015687 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID----HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 189 (402)
Q Consensus 114 g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~ 189 (402)
.++|.|+++|.+++ ...++.|..+|..|++++.+..+.-.. .-.+|.++++.+++++.+|..|+.++..+....+
T Consensus 128 elLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc
Confidence 36999999999998 788999999999999987665443221 1368999999999999999999999998876554
Q ss_pred hhhHHHHh-cCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHh
Q 015687 190 KCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 268 (402)
Q Consensus 190 ~~~~~~~~-~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l 268 (402)
.. .... ..+++.+..+- .+.+++++.+.|.+|..|....+..-.....++++.+++..++.|++|.-.||.....+
T Consensus 207 qa--l~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 207 QA--LYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL 283 (885)
T ss_pred HH--HHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence 32 2111 11344444444 78899999999999999999887777777889999999999999999999999998888
Q ss_pred ccCChHHHHHHHH--hCcHHHHHHhcCCCC--------------------------------------------------
Q 015687 269 SDGTNDKIQAVIE--AGVCPRLVELLRHPS-------------------------------------------------- 296 (402)
Q Consensus 269 ~~~~~~~~~~~~~--~~~i~~L~~~L~~~~-------------------------------------------------- 296 (402)
+..+. ....+.. ..++|.|+.-+..++
T Consensus 284 aeqpi-~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD 362 (885)
T KOG2023|consen 284 AEQPI-CKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD 362 (885)
T ss_pred hcCcC-cHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence 87653 2122221 134455544432110
Q ss_pred ------hhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCH
Q 015687 297 ------PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGII 370 (402)
Q Consensus 297 ------~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i 370 (402)
+.+|+....+|.-++.--. +.++. -++|.|-..|.+. +-.+|+.++.+|+.|+.|+-...-.-+- .++
T Consensus 363 dD~~~dWNLRkCSAAaLDVLanvf~---~elL~-~l~PlLk~~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~Lp-eLi 436 (885)
T KOG2023|consen 363 DDAFSDWNLRKCSAAALDVLANVFG---DELLP-ILLPLLKEHLSSE-EWKVREAGVLALGAIAEGCMQGFVPHLP-ELI 436 (885)
T ss_pred ccccccccHhhccHHHHHHHHHhhH---HHHHH-HHHHHHHHHcCcc-hhhhhhhhHHHHHHHHHHHhhhcccchH-HHH
Confidence 2244433333333332111 11111 3455566666666 7789999999999999875443222222 379
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 371 GPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 371 ~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
|.|+.+|.++-+-||.-.||+|+..+.
T Consensus 437 p~l~~~L~DKkplVRsITCWTLsRys~ 463 (885)
T KOG2023|consen 437 PFLLSLLDDKKPLVRSITCWTLSRYSK 463 (885)
T ss_pred HHHHHHhccCccceeeeeeeeHhhhhh
Confidence 999999999999999999999988754
No 37
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.43 E-value=6.2e-11 Score=108.60 Aligned_cols=280 Identities=14% Similarity=0.130 Sum_probs=204.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
....++..|+++|...+..|+..+..+++.. ..........-+++.+...+++++....+..++.+|..+... ++.+.
T Consensus 102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~-~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~ 179 (429)
T cd00256 102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFG-LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRF 179 (429)
T ss_pred chHHHHHHHcCCchhHHHHHHHHHHHHHhcC-ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHH
Confidence 4567778888999999999999999998754 222111111114456667776554367888999999999986 88999
Q ss_pred HHHhCCchHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 152 VVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
.+.+.++++.|+.+|+. .+..++-.++.+++-++.+.+ ........+.++.++.++.....+.+.+-++.+|.|+..
T Consensus 180 ~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 180 AFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 99999999999999975 356889999999999988766 445666789999999999888899999999999999998
Q ss_pred CCC----CC--chhhhhchHHHHHHhccC---CChhHHHHHHHHHH-------Hhcc------------------C-Ch-
Q 015687 230 GKP----QP--LFEQTRPALPALERLIHS---NDDEVLTDACWALS-------YLSD------------------G-TN- 273 (402)
Q Consensus 230 ~~~----~~--~~~~~~~~l~~L~~lL~~---~~~~v~~~a~~~l~-------~l~~------------------~-~~- 273 (402)
... .. ....+...++.++..|.. .|+++..+.-..-. .++. + ++
T Consensus 259 ~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~ 338 (429)
T cd00256 259 KRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEK 338 (429)
T ss_pred cccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCch
Confidence 641 11 112234345555555543 46665544322111 1221 1 11
Q ss_pred ---HHHHHHHHh--CcHHHHHHhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHH
Q 015687 274 ---DKIQAVIEA--GVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC 347 (402)
Q Consensus 274 ---~~~~~~~~~--~~i~~L~~~L~-~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~ 347 (402)
+....+-+. .++..|+.+|. +.++.+..-||.=||.++...|.....+-+.|+=..++.++.++ +++||.+|.
T Consensus 339 FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~-d~~Vr~eAL 417 (429)
T cd00256 339 FWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHE-DPNVRYEAL 417 (429)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCC-CHHHHHHHH
Confidence 112223333 35778899984 55778888899999999999888888777889999999999999 999999999
Q ss_pred HHHHHHhc
Q 015687 348 WTISNITA 355 (402)
Q Consensus 348 ~~L~nl~~ 355 (402)
.++.-+..
T Consensus 418 ~avQklm~ 425 (429)
T cd00256 418 LAVQKLMV 425 (429)
T ss_pred HHHHHHHH
Confidence 99987754
No 38
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=2.4e-10 Score=102.57 Aligned_cols=302 Identities=15% Similarity=0.137 Sum_probs=209.3
Q ss_pred CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHH
Q 015687 84 DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV 163 (402)
Q Consensus 84 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 163 (402)
...+...|+..|.+++.. ...-..+....++..|++.|..++ .++.......|..++-. .++...+.+.|++..|+
T Consensus 276 QeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~ 351 (791)
T KOG1222|consen 276 QEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLL 351 (791)
T ss_pred HHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHH
Confidence 344555677788888642 334456888899999999999888 78888888888888875 78899999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchH
Q 015687 164 RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPAL 243 (402)
Q Consensus 164 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l 243 (402)
+++...+++++...+..+.|++.++. .|..++..|.+|.+..++..+... ..|.-.+..++.++..........++
T Consensus 352 klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~~---~iA~~~lYh~S~dD~~K~MfayTdci 427 (791)
T KOG1222|consen 352 KLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTKH---GIALNMLYHLSCDDDAKAMFAYTDCI 427 (791)
T ss_pred HhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCcccc---hhhhhhhhhhccCcHHHHHHHHHHHH
Confidence 99999999999999999999998876 688889999999999999544433 23455566666654433333446677
Q ss_pred HHHHHhcc-CCChhHHHHHH--------------------------------------HHHHHhccCChHHHHHHHHhCc
Q 015687 244 PALERLIH-SNDDEVLTDAC--------------------------------------WALSYLSDGTNDKIQAVIEAGV 284 (402)
Q Consensus 244 ~~L~~lL~-~~~~~v~~~a~--------------------------------------~~l~~l~~~~~~~~~~~~~~~~ 284 (402)
+.+.+.+- ..+.+|-...+ ..+.+++.+.......+++ .
T Consensus 428 ~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~Fid--y 505 (791)
T KOG1222|consen 428 KLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFID--Y 505 (791)
T ss_pred HHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHH--H
Confidence 76665442 23333322222 2233333333222222222 2
Q ss_pred HHHHHHhcCC-CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCC-chhHHHHHHHHHHHHhcCCHHHHH
Q 015687 285 CPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQIQ 362 (402)
Q Consensus 285 i~~L~~~L~~-~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~~~~~~~ 362 (402)
+.-|..+++. +++.....|+.+++|+.-...+..+.+-+.+++|.+-..|..+. ..++.-..+-+++.++.. ..+..
T Consensus 506 vgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~ 584 (791)
T KOG1222|consen 506 VGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCAR 584 (791)
T ss_pred HHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHH
Confidence 3344444433 34567788999999998866667777778899999999997652 345666677777766653 45555
Q ss_pred HHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHhh
Q 015687 363 AIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNAT 396 (402)
Q Consensus 363 ~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~ 396 (402)
.+..+|+++.|+++|+. .|.+.....+++...+.
T Consensus 585 Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l 620 (791)
T KOG1222|consen 585 LLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFL 620 (791)
T ss_pred HhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 56678999999999976 44555555565555443
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=99.41 E-value=6.4e-10 Score=109.65 Aligned_cols=294 Identities=15% Similarity=0.105 Sum_probs=210.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
|.+.++.+.|++.+...+..+++.+....... .+.. .+++..++++.+++ .+++.-+.-.+.+.+...++..
T Consensus 32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~DvS------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pela 103 (746)
T PTZ00429 32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDVS------YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKA 103 (746)
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCch------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHH
Confidence 45677888888988888888887666665443 2222 24677888888888 8999999999999887655532
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
+. ++..|.+=+.++++.+|..|+++|+++-.. .+.+ -.+.++.+.+ .+.++-+++.|+.++..+...
T Consensus 104 --lL---aINtl~KDl~d~Np~IRaLALRtLs~Ir~~------~i~e-~l~~~lkk~L-~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 104 --LL---AVNTFLQDTTNSSPVVRALAVRTMMCIRVS------SVLE-YTLEPLRRAV-ADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred --HH---HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH------HHHH-HHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhh
Confidence 22 477888888999999999999999998432 1111 1455666677 788999999999999999887
Q ss_pred CCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 015687 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (402)
Q Consensus 231 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl 310 (402)
.|. .....+.++.|..+|.+.|+.|..+|+.+|..+....++... ...+.+..++..+..-++-.+...+.+|...
T Consensus 171 ~pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y 246 (746)
T PTZ00429 171 DMQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQ 246 (746)
T ss_pred Ccc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence 553 223356788899999999999999999999999865544332 3345577788888766776777888888654
Q ss_pred hcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHH
Q 015687 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA 389 (402)
Q Consensus 311 ~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 389 (402)
...++... ..++..+...|++. ++.|.-+|+.++.++... .++.+..+... +.+.|+.++ +++++++..++
T Consensus 247 ~P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~r-l~~pLv~L~-ss~~eiqyvaL 318 (746)
T PTZ00429 247 RPSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTVR-VNTALLTLS-RRDAETQYIVC 318 (746)
T ss_pred CCCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHHH-HHHHHHHhh-CCCccHHHHHH
Confidence 33322222 24567788889998 999999999999999864 34433333322 335566553 46677887777
Q ss_pred HHHHHhhc
Q 015687 390 WAISNATS 397 (402)
Q Consensus 390 ~aL~nl~~ 397 (402)
..|.-++.
T Consensus 319 r~I~~i~~ 326 (746)
T PTZ00429 319 KNIHALLV 326 (746)
T ss_pred HHHHHHHH
Confidence 76655543
No 40
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.39 E-value=4.9e-11 Score=116.61 Aligned_cols=256 Identities=18% Similarity=0.216 Sum_probs=162.4
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
...+.+++.+.+.|...+..+--.+..+...+ +. ..+. +++.+.+=|.+++ +.++..|++++++++. ++..
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~~-~~~l---~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~ 112 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHED--PE-LLIL---IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMA 112 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTS--HH-HHHH---HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc--hh-HHHH---HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchh
Confidence 36788888888888888888887777775432 22 1111 4677777788877 8899999999999884 3333
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
. .+++.+.+++.++++.||..|+-++..+....|.. +... .++.+..++ .++++.+...|+.++..+ ..
T Consensus 113 ~-----~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~ 181 (526)
T PF01602_consen 113 E-----PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KC 181 (526)
T ss_dssp H-----HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HC
T ss_pred h-----HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-cc
Confidence 2 25778888888899999999999999988765542 2222 577788888 777888888888888888 22
Q ss_pred CCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 015687 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (402)
Q Consensus 231 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl 310 (402)
.+..........++.|.+++...++..+..++..+..++......... ..+++.+..++.+.++.+...|+.++..+
T Consensus 182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l 258 (526)
T PF01602_consen 182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKL 258 (526)
T ss_dssp THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 111111334555566666666777777777777777776554433211 23445555555555555555555555554
Q ss_pred hcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 015687 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (402)
Q Consensus 311 ~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 356 (402)
....+ .-..+++.|..++.++ ++.++-.++.+|..++..
T Consensus 259 ~~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~ 297 (526)
T PF01602_consen 259 SPSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQS 297 (526)
T ss_dssp SSSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCH
T ss_pred hcchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcc
Confidence 43222 1113444555555544 555555555555555543
No 41
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=6.2e-11 Score=111.69 Aligned_cols=316 Identities=16% Similarity=0.184 Sum_probs=209.4
Q ss_pred HHHHHhhcCCCHH-HHHHHHHHHHHHhccCCCCchhHHh-hcCcHHHHHHhhcC-CCCHHHHHHHHHHHHHhhcCCC-cc
Q 015687 74 PAMVAGVWSDDRN-IQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSR-DDFPQLQFEAAWALTNIASGTS-EN 149 (402)
Q Consensus 74 ~~l~~~l~s~~~~-~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~i~~L~~lL~~-~~~~~~~~~a~~~L~~l~~~~~-~~ 149 (402)
+.++.....+.+. .+..++.++..+.. + -.|....- ...++..+++-... +.+..+|..|+.+|.|-..-.. .+
T Consensus 132 ~~lv~nv~~~~~~~~k~~slealGyice-~-i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF 209 (859)
T KOG1241|consen 132 VTLVSNVGEEQASMVKESSLEALGYICE-D-IDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANF 209 (859)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHc-c-CCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444 77778888888843 2 22221111 23355555555443 3347899999999988554211 11
Q ss_pred hHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
....-.+=++...+..-.+++.+++..|..+|..|..-.-++-..-+....+..-+..+ .++++++...+...++++|.
T Consensus 210 ~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~am-ks~~deValQaiEFWstice 288 (859)
T KOG1241|consen 210 NNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAM-KSDNDEVALQAIEFWSTICE 288 (859)
T ss_pred ccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHH
Confidence 11122223566677777889999999999999999754333333333333444445556 57888999999999998887
Q ss_pred CC-C------------CC--chh----hhhchHHHHHHhccCC-------ChhHHHHHHHHHHHhccCChHHHHHHHHhC
Q 015687 230 GK-P------------QP--LFE----QTRPALPALERLIHSN-------DDEVLTDACWALSYLSDGTNDKIQAVIEAG 283 (402)
Q Consensus 230 ~~-~------------~~--~~~----~~~~~l~~L~~lL~~~-------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 283 (402)
.. + .+ ... ....++|.|+++|... |......|-.+|.-++....+. ++. .
T Consensus 289 EEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~-~ 364 (859)
T KOG1241|consen 289 EEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP-H 364 (859)
T ss_pred HHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc---chh-h
Confidence 53 1 11 111 1246788888888431 2335555555665555432222 222 3
Q ss_pred cHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 015687 284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA 363 (402)
Q Consensus 284 ~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 363 (402)
+++.+-+.++++++.-++.|..++|.+..+.+.....-+..+++|.++.++.++ .-.++..+.|+++.++.+.++.+..
T Consensus 365 Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~n 443 (859)
T KOG1241|consen 365 VLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEAIIN 443 (859)
T ss_pred hHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhhccc
Confidence 556666677899999999999999999999887777777789999999999977 8889999999999999876654432
Q ss_pred HH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 364 II-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 364 l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
-. ....++.++.-|. ++|.+..++||++.+|+.+
T Consensus 444 ~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea 478 (859)
T KOG1241|consen 444 QELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEA 478 (859)
T ss_pred HhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHH
Confidence 22 3445666666665 6789999999999999854
No 42
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.33 E-value=3.9e-10 Score=110.26 Aligned_cols=288 Identities=19% Similarity=0.243 Sum_probs=213.7
Q ss_pred HHHHhhcCC--CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 75 AMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 75 ~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
++.+.+.+. +...+..++..+..+...+ . ... .+.+..++++.+.+ ...+.-+--.+..+...+++..
T Consensus 8 el~~~~~~~~~~~~~~~~~l~kli~~~~~G-~-~~~-----~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~-- 77 (526)
T PF01602_consen 8 ELAKILNSFKIDISKKKEALKKLIYLMMLG-Y-DIS-----FLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELL-- 77 (526)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHHHHHHTT-----G-----STHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHH--
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-C-CCc-----hHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHH--
Confidence 344444444 6777777777666665443 1 221 36788999999777 8889888888888888655522
Q ss_pred HHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC
Q 015687 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 232 (402)
+. ++..+.+=|.++++.++..|+.++++++ .++..+. .++.+.+++ .++++.+++.|+.++..+....|
T Consensus 78 ~l---~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p 146 (526)
T PF01602_consen 78 IL---IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLL-SDPSPYVRKKAALALLKIYRKDP 146 (526)
T ss_dssp HH---HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCH
T ss_pred HH---HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHh-cCCchHHHHHHHHHHHHHhccCH
Confidence 22 5777888889999999999999999997 3332222 467777787 78889999999999999998854
Q ss_pred CCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 015687 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 233 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
.... .. .++.+..+|.+.|+.+...|+.++..+ ..++.... -.-...+..|..++...++-.+..+++++..++.
T Consensus 147 ~~~~--~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~ 221 (526)
T PF01602_consen 147 DLVE--DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAP 221 (526)
T ss_dssp CCHH--GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred HHHH--HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence 3211 12 689999999999999999999999999 33332211 1122345666777788899999999999999998
Q ss_pred CChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHH
Q 015687 313 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 392 (402)
Q Consensus 313 ~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 392 (402)
..+..... ..+++.+..++++. ++.|.-+++.++..+.... . .-..+++.|..++.++++.++..++.+|
T Consensus 222 ~~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~-~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L 291 (526)
T PF01602_consen 222 MEPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSP-E-----LLQKAINPLIKLLSSSDPNVRYIALDSL 291 (526)
T ss_dssp SSHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSH-H-----HHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred CChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcch-H-----HHHhhHHHHHHHhhcccchhehhHHHHH
Confidence 77755521 35677889999888 9999999999999887643 2 2223688999999999999999999999
Q ss_pred HHhhcC
Q 015687 393 SNATSG 398 (402)
Q Consensus 393 ~nl~~~ 398 (402)
..++..
T Consensus 292 ~~l~~~ 297 (526)
T PF01602_consen 292 SQLAQS 297 (526)
T ss_dssp HHHCCH
T ss_pred HHhhcc
Confidence 988764
No 43
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.33 E-value=2.4e-10 Score=117.30 Aligned_cols=219 Identities=19% Similarity=0.221 Sum_probs=150.5
Q ss_pred hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 015687 112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191 (402)
Q Consensus 112 ~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 191 (402)
+.+.++.|+..|.+++ +.+|..|+..|+.+.. .++++.|...|++++..+|..|+.+|+.+....+
T Consensus 619 ~~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-- 684 (897)
T PRK13800 619 DAPSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-- 684 (897)
T ss_pred cchhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC--
Confidence 4456789999999988 9999999999998753 2578999999999999999999999988853221
Q ss_pred hHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHH-----
Q 015687 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALS----- 266 (402)
Q Consensus 192 ~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~----- 266 (402)
..+.+...| .++++.++..++.+|..+.... .+.++..|.++|+.++..++.+|.
T Consensus 685 --------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~~ 744 (897)
T PRK13800 685 --------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDDV 744 (897)
T ss_pred --------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccCc
Confidence 113344444 4456666666666555543110 122334444455555555555444
Q ss_pred -----------------------HhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHh
Q 015687 267 -----------------------YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN 323 (402)
Q Consensus 267 -----------------------~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~ 323 (402)
.+..... ..++.|..++.++++.+|..|+.+|+.+....
T Consensus 745 ~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~--------- 806 (897)
T PRK13800 745 ESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAELGCPP--------- 806 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc---------
Confidence 4432111 12566777777777788888888887774321
Q ss_pred CCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 324 HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 324 ~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
.+.+.+...|.++ ++.||..|+++|+.+.. ++ .++.|+.+|.+++..||.+|+++|+.+
T Consensus 807 -~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~--~~---------a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 807 -DDVAAATAALRAS-AWQVRQGAARALAGAAA--DV---------AVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred -hhHHHHHHHhcCC-ChHHHHHHHHHHHhccc--cc---------hHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 1224577788877 88888888888887642 22 468899999999999999999999986
No 44
>PTZ00429 beta-adaptin; Provisional
Probab=99.33 E-value=3.7e-09 Score=104.31 Aligned_cols=300 Identities=14% Similarity=0.128 Sum_probs=204.1
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
.++.+++.+.++|.+.+......+.+++... +-..+. +++.|.+=+.+++ +.+|-.|++.|++|-. ++...
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~---pelalL---aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e 139 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQ---PEKALL---AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLE 139 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC---hHHHHH---HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHH
Confidence 4688888999999999998888888875422 222222 3788888888888 9999999999998776 32222
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
-+++.+.+.+.+.++-||..|+.++.++...+|+ .+.+.|.++.|..++ .+.++.+..+|+.+|..++...
T Consensus 140 -----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 140 -----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred -----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhC
Confidence 2466778888999999999999999999876663 455667888999988 7899999999999999998775
Q ss_pred CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 015687 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (402)
Q Consensus 232 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~ 311 (402)
+. ......+.+..++..+..-++..+...+.+|......++... ..++..+.+.|++.++.|...|++++-++.
T Consensus 211 ~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 211 SE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred ch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 43 244446666777777777778888888888866442222211 246788889999999999999999999887
Q ss_pred cCC-hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-------------------------
Q 015687 312 TGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII------------------------- 365 (402)
Q Consensus 312 ~~~-~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~------------------------- 365 (402)
... +.....+.. .+-+.++.++ ++ +++++-.+...+.-+....|.....-+
T Consensus 285 ~~~~~~~~~~~~~-rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~La 361 (746)
T PTZ00429 285 SRCSQELIERCTV-RVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLV 361 (746)
T ss_pred CcCCHHHHHHHHH-HHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHc
Confidence 543 222222111 2224444443 33 455555555455444433332211100
Q ss_pred H-c---CCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 366 E-A---GIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 366 ~-~---~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
+ . .++..|.+...+.+.+++..++.++++|+..
T Consensus 362 ne~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k 398 (746)
T PTZ00429 362 TPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIK 398 (746)
T ss_pred CcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Confidence 0 0 1233444445566778888888888888753
No 45
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.31 E-value=2.9e-10 Score=100.69 Aligned_cols=309 Identities=14% Similarity=0.069 Sum_probs=213.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
.+..+..+..+|......+.+.+.++.+.. +.........=....|...++++.+.+-...|++||-.+... ++.+..
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~ 193 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYA 193 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhhe
Confidence 567888899999988888888888887654 222211000012344555666644467788899999999986 889999
Q ss_pred HHhCCchHHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 153 VIDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
++...++..++..+. ..+..++-+.+.+++-|+.+++.. ..+...+.++.|..++..+..+.+.+-++.++.|++..
T Consensus 194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999888999999883 367889999999999998887754 66688889999999998888999999999999999988
Q ss_pred CCCCch------hhhhchHHHHHHhcc---CCChhHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHH-hcCCCChhh
Q 015687 231 KPQPLF------EQTRPALPALERLIH---SNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVE-LLRHPSPSV 299 (402)
Q Consensus 231 ~~~~~~------~~~~~~l~~L~~lL~---~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~-~L~~~~~~v 299 (402)
.+.... ..+..-++..++.|. -+|+++..+.-..-..|-. ..+.+-.- .....+.. .|. -+|.-
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~----svq~LsSFDeY~sEl~sG~L~-WSP~H 347 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKN----SVQDLSSFDEYKSELRSGRLE-WSPVH 347 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----HHHhhccHHHHHHHHHhCCcC-CCccc
Confidence 643322 223344445555553 3577766654433333321 11111000 00011111 111 12221
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHh--CCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh
Q 015687 300 LIPALRTVGNIVTGDDMQTQCIIN--HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 377 (402)
Q Consensus 300 ~~~a~~~l~nl~~~~~~~~~~i~~--~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 377 (402)
+..-.|- ++...+.+ ..++..|+.+|+.+.+|.+-.-||.=++....+.|+....+.+.|+=..+++++
T Consensus 348 k~e~FW~---------eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Ll 418 (442)
T KOG2759|consen 348 KSEKFWR---------ENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLL 418 (442)
T ss_pred cccchHH---------HhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHh
Confidence 2221111 12222222 246788999999886799999999999999999899888888999999999999
Q ss_pred ccCCHHHHHHHHHHHHHhhcC
Q 015687 378 LNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 378 ~~~~~~v~~~a~~aL~nl~~~ 398 (402)
+.+|++|+.+|+.|+..|..+
T Consensus 419 nh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 419 NHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred cCCCchHHHHHHHHHHHHHhh
Confidence 999999999999999888764
No 46
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=6.7e-10 Score=105.94 Aligned_cols=260 Identities=18% Similarity=0.183 Sum_probs=205.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhh-cCCCcchHHHHhCCchHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhhH
Q 015687 116 VPRFIEFLSRDDFPQLQFEAAWALTNIA-SGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRD 193 (402)
Q Consensus 116 i~~L~~lL~~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~ 193 (402)
+..|++-|....++..|.+|+.-|+.+. -++.+....+--...+|.|+.+|++ .+.++.-.|++||.+++.-.|....
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 5566666666533788888888887644 3444444444344679999999987 6899999999999999998888788
Q ss_pred HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccC-C
Q 015687 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG-T 272 (402)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~-~ 272 (402)
.+++.++||.|+..|..-...++.+.++.+|-.+++..|. ...-.|.+-..+.+|.--...++..|+.+.+|+|.. .
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~--AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK--AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH--HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8999999999999997778889999999999999998543 233357777777777666777899999999999954 3
Q ss_pred hHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcC---ChHHHHHHHhCCChHHHHHHhcCCC---chhHHHHH
Q 015687 273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG---DDMQTQCIINHQALPCLLDLLTQNY---KKSIKKEA 346 (402)
Q Consensus 273 ~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~---~~~~~~~i~~~~~l~~L~~ll~~~~---~~~v~~~a 346 (402)
.+....+++ .+|.|..+|++.+....+.++.++..++.+ .++..+.+..+|++....+++.-.. +..+....
T Consensus 327 sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~v 404 (1051)
T KOG0168|consen 327 SDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGV 404 (1051)
T ss_pred CccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHH
Confidence 333455554 589999999999999999999999998864 4556777888999999999997551 12455677
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc
Q 015687 347 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN 379 (402)
Q Consensus 347 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~ 379 (402)
+.+|+-++.+++-....+...++...|.++|..
T Consensus 405 Irmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 405 IRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 788888999999999999999999999999864
No 47
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.25 E-value=4.5e-09 Score=98.08 Aligned_cols=126 Identities=12% Similarity=0.143 Sum_probs=105.5
Q ss_pred hchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 015687 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 319 (402)
Q Consensus 240 ~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~ 319 (402)
..+...+++++..++..|...++.+++|+.-.-.+....++..|+++.+..++.+.++.++..++|+|.++..+.++..+
T Consensus 418 ~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k 497 (678)
T KOG1293|consen 418 NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEK 497 (678)
T ss_pred chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHH
Confidence 35567788888888889999999999999866555668899999999999999999999999999999999999887766
Q ss_pred HHHhCCChH-HHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015687 320 CIINHQALP-CLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 366 (402)
Q Consensus 320 ~i~~~~~l~-~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 366 (402)
......+-. .+..+.+++ ++.|++.+...+.|++.++.+.+..+++
T Consensus 498 ~~~~~ki~a~~i~~l~nd~-d~~Vqeq~fqllRNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 498 FQLLAKIPANLILDLINDP-DWAVQEQCFQLLRNLTCNSRKSVDFLLE 544 (678)
T ss_pred HHHHHHhhHHHHHHHHhCC-CHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 555555443 455566666 9999999999999999998888877765
No 48
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=6e-10 Score=97.47 Aligned_cols=183 Identities=18% Similarity=0.209 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHh
Q 015687 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF 208 (402)
Q Consensus 129 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l 208 (402)
.+-+..|+.-|..++.. -++...+++.|+...++.++++++..+|+.|+|+|+..+.++|..+..+++.|++..|+..+
T Consensus 97 le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred HHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 77788899999988875 78889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHhhhCCCCCch-hhhhchHHHHHHhccC--CChhHHHHHHHHHHHhccCChHHHHHHHHhCcH
Q 015687 209 NEHAKLSMLRNATWTLSNFCRGKPQPLF-EQTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVC 285 (402)
Q Consensus 209 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~L~~lL~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i 285 (402)
..+.+..++..|+++++.+.++.+.... ...-++...|...+++ .+...+..++..+.++..........+...+..
T Consensus 176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~ 255 (342)
T KOG2160|consen 176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQ 255 (342)
T ss_pred ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhh
Confidence 8777888999999999999999844333 3335668899999988 567788999999999987666555555555666
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHhhc
Q 015687 286 PRLVELLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 286 ~~L~~~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
..+..+....+..+.+.++.++-....
T Consensus 256 ~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 256 RVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 666667777778888888887766654
No 49
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=8.6e-10 Score=104.18 Aligned_cols=321 Identities=19% Similarity=0.200 Sum_probs=219.6
Q ss_pred HHHHHHhhcC--CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 73 LPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 73 i~~l~~~l~s--~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
+-.++...++ .+..+++.|+.+|.+.+...+.....+.-..=+++..++.-++++ .+++..|+.||..|..-..++.
T Consensus 174 LtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d-~~i~~aa~~ClvkIm~LyY~~m 252 (859)
T KOG1241|consen 174 LTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPD-EEIQVAAFQCLVKIMSLYYEFM 252 (859)
T ss_pred HHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554 356788999999988765543222333444446677778878888 8999999999999998767777
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh--------------h-HHH---HhcCChHHHHHHhcc-c
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC--------------R-DLV---LSNGALMPLLAQFNE-H 211 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~--------------~-~~~---~~~g~i~~L~~~l~~-~ 211 (402)
........+..-+.-+.+++++|.-+++...+++|.+.-+. . ..+ .-.+++|.|+++|.+ +
T Consensus 253 ~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqd 332 (859)
T KOG1241|consen 253 EPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQD 332 (859)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCC
Confidence 77777677888888888999999999999999988432110 0 000 112467778888743 2
Q ss_pred h-----hhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 015687 212 A-----KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 286 (402)
Q Consensus 212 ~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~ 286 (402)
+ +-.....|..+|.-+++... ...+..++|.+-.-++++|..-+..+..+++.+-.+++.....-+-.++++
T Consensus 333 e~~d~DdWnp~kAAg~CL~l~A~~~~---D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp 409 (859)
T KOG1241|consen 333 EDDDDDDWNPAKAAGVCLMLFAQCVG---DDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALP 409 (859)
T ss_pred CCcccccCcHHHHHHHHHHHHHHHhc---ccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhH
Confidence 1 12233334344433333211 123347788888888999999999999999999988776555555567899
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH-HHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHH----
Q 015687 287 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ-CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI---- 361 (402)
Q Consensus 287 ~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~-~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~---- 361 (402)
.++.++.+++-.++..+.|++|.++.+.++.+. ...-.+.++.++.-|.+ .|.+-.++||++.+++.+.++..
T Consensus 410 ~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea~~eA~~s~~ 487 (859)
T KOG1241|consen 410 SIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASNVCWAFISLAEAAYEAAVSNG 487 (859)
T ss_pred HHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHHHHhccCCC
Confidence 999999988888999999999999987764322 12233567777777765 58899999999999995322211
Q ss_pred -----HHHHHcCCHHHHHHHhcc---CCHHHHHHHHHHHHHhhcCCC
Q 015687 362 -----QAIIEAGIIGPLVNLLLN---AEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 362 -----~~l~~~~~i~~L~~ll~~---~~~~v~~~a~~aL~nl~~~~~ 400 (402)
....+. ++..|+..-+. .+..+|..|-.||.-++..++
T Consensus 488 qt~~~t~~y~~-ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st 533 (859)
T KOG1241|consen 488 QTDPATPFYEA-IIGSLLKVTDRADGNQSNLRSAAYEALMELIKNST 533 (859)
T ss_pred CCCccchhHHH-HHHHHHhhccccccchhhHHHHHHHHHHHHHHcCc
Confidence 111111 34444444433 456799999999998887665
No 50
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.2e-09 Score=95.62 Aligned_cols=187 Identities=23% Similarity=0.238 Sum_probs=155.8
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchH
Q 015687 81 WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVP 160 (402)
Q Consensus 81 ~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 160 (402)
.+.+.+.+..|+..|..++. +-++...++..|++..++.++++++ ..+|..|+|+|+.++..+|.....+++.|+.+
T Consensus 93 ~s~~le~ke~ald~Le~lve--~iDnAndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVE--DIDNANDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHH--hhhhHHhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 35678899999999999875 3677888999999999999999998 99999999999999999999999999999999
Q ss_pred HHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccc-hhhHHHHHHHHHHHHhhhCCCCCchhh
Q 015687 161 IFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQ 238 (402)
Q Consensus 161 ~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~ 238 (402)
.|+..+.+ .+..++..|+.+++.+..+.+...+.+...++...|...+... .+..+++.++..+..+...........
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 99999886 5567789999999999999988899999999999999999543 688899999999999998873333333
Q ss_pred h-hchHHHHHHhccCCChhHHHHHHHHHHHhcc
Q 015687 239 T-RPALPALERLIHSNDDEVLTDACWALSYLSD 270 (402)
Q Consensus 239 ~-~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~ 270 (402)
. .++-..+..+..+.+.++...++.++..+..
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 3 3444455566666777888887777665543
No 51
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.16 E-value=1.7e-09 Score=97.67 Aligned_cols=230 Identities=18% Similarity=0.263 Sum_probs=162.4
Q ss_pred chHHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchhhHHHHh------cCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 158 AVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLS------NGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 158 ~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~------~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
....++.+|+ +++.++.+..+..+..+..+.+...+.+.. .....++++++ ..+|..+...++..+..+..
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence 3455555554 368999999999999999988876666655 23678889877 67799999999999999998
Q ss_pred CCCCCchhhhhchHHHHHHhcc----CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-----CC--CChh
Q 015687 230 GKPQPLFEQTRPALPALERLIH----SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-----RH--PSPS 298 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL~----~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L-----~~--~~~~ 298 (402)
..+........+.++.++..+. +++.+++..++.++.++..... ....+.+.|+++.+..++ .. .+..
T Consensus 135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~-~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 135 QGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE-YRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp STTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH-HHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred cCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch-hHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 8766555533555566665554 4567788999999999985544 557788899999999999 22 2356
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHcCCHHHHHHHh
Q 015687 299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN-QIQAIIEAGIIGPLVNLL 377 (402)
Q Consensus 299 v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~ll 377 (402)
++..++.++.-++. +++....+.+.++++.|..+++.....+|.+-+..++.|++...++ ....++..|+++.+-.+.
T Consensus 214 l~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~ 292 (312)
T PF03224_consen 214 LQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLS 292 (312)
T ss_dssp HHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHh
Confidence 78889999998877 5557777888899999999998776889999999999999985443 778888887777766665
Q ss_pred cc--CCHHHHHHHHH
Q 015687 378 LN--AEFEIKKEAAW 390 (402)
Q Consensus 378 ~~--~~~~v~~~a~~ 390 (402)
.. +|+++....-+
T Consensus 293 ~rk~~Dedl~edl~~ 307 (312)
T PF03224_consen 293 ERKWSDEDLTEDLEF 307 (312)
T ss_dssp SS--SSHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHH
Confidence 44 67877765443
No 52
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=2.1e-09 Score=104.77 Aligned_cols=274 Identities=17% Similarity=0.215 Sum_probs=211.0
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHH
Q 015687 83 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF 162 (402)
Q Consensus 83 ~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 162 (402)
.....|+.|-..-....+.++.||-+ +|..++.|-+ +--+..|+..|+....-.+-....-..-|++|+.
T Consensus 448 ~FFteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYV 517 (1387)
T KOG1517|consen 448 PFFTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYV 517 (1387)
T ss_pred chHHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHH
Confidence 34567777877777777777777776 6777777665 3447788889988887667777888888999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccch--hhHHHHHHHHHHHHhhhCCCCCchhhh-
Q 015687 163 VRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCRGKPQPLFEQT- 239 (402)
Q Consensus 163 ~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~- 239 (402)
++||+++-.+++...+.+...|..-++.++..+++.++-..++..|..++ +++-+..++++|+.++++.+..+....
T Consensus 518 LKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~ 597 (1387)
T KOG1517|consen 518 LKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLN 597 (1387)
T ss_pred HHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcc
Confidence 99999999999999888888887777889989999888888888885423 457788899999999998755444443
Q ss_pred hchHHHHHHhccCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcC----C
Q 015687 240 RPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG----D 314 (402)
Q Consensus 240 ~~~l~~L~~lL~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~----~ 314 (402)
.+++...+..|.++ .+-++.-+|-+|+.|=...+...-.-.+.++.+.|..+|.++-++||..|+++||.+..+ .
T Consensus 598 ~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~f 677 (1387)
T KOG1517|consen 598 GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNF 677 (1387)
T ss_pred ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccccccc
Confidence 66777777788775 577888899999998766554444456678899999999999999999999999999986 3
Q ss_pred hHHHHHH------------HhCCCh---HHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 015687 315 DMQTQCI------------INHQAL---PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA 367 (402)
Q Consensus 315 ~~~~~~i------------~~~~~l---~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 367 (402)
++++..+ ++..+. -.++.+++.+ .+-++.+.+-+|+.+..+...+...+.-+
T Consensus 678 de~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~n 744 (1387)
T KOG1517|consen 678 DEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAGN 744 (1387)
T ss_pred chhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhhh
Confidence 4333322 222222 3677778888 99999999999999998777766555443
No 53
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=2.2e-07 Score=88.59 Aligned_cols=321 Identities=18% Similarity=0.202 Sum_probs=235.8
Q ss_pred ccHHHHHHhhcCCC-HHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCC-CCHHHHHHHHHHHHHhhcCCC-
Q 015687 71 ESLPAMVAGVWSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTNIASGTS- 147 (402)
Q Consensus 71 ~~i~~l~~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~~~~~~a~~~L~~l~~~~~- 147 (402)
+.|+.|+..+.+.. .+-+..|+..|..+.. .....+... +++.|++.|+.+ .++++...++..+.++....+
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr----kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR----KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH----HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 56899998888654 7889999999988842 233444444 589999999753 348999999999999887542
Q ss_pred -----cch----------HHH-HhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchhhHHHHhc-CChHHHHHHhc
Q 015687 148 -----ENT----------RVV-IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSN-GALMPLLAQFN 209 (402)
Q Consensus 148 -----~~~----------~~~-~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~-g~i~~L~~~l~ 209 (402)
+.+ +.+ ...+.|..|+.+++..|--||..++..|.++... +++.++.++.. -+|..++.+|
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL- 175 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL- 175 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-
Confidence 111 223 3357899999999999999999999999998755 45666666553 5789999999
Q ss_pred cchhhHHHHHHHHHHHHhhhCCCCCchh-hhhchHHHHHHhccCC---C-hhHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 015687 210 EHAKLSMLRNATWTLSNFCRGKPQPLFE-QTRPALPALERLIHSN---D-DEVLTDACWALSYLSDGTNDKIQAVIEAGV 284 (402)
Q Consensus 210 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~l~~L~~lL~~~---~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 284 (402)
.+....++..+...|..|.++.+..+.. ...+++..|..++... | .-|..+++..+.||...+....+.+.+.+.
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 7777889999999999999997655543 3488999999999653 3 357889999999999887777788899999
Q ss_pred HHHHHHhcCC---CC-----hh-----hHHHHHHHHHHhhcCCh-----HHH-HHHHhCCChHHHHHHhcCC-CchhHHH
Q 015687 285 CPRLVELLRH---PS-----PS-----VLIPALRTVGNIVTGDD-----MQT-QCIINHQALPCLLDLLTQN-YKKSIKK 344 (402)
Q Consensus 285 i~~L~~~L~~---~~-----~~-----v~~~a~~~l~nl~~~~~-----~~~-~~i~~~~~l~~L~~ll~~~-~~~~v~~ 344 (402)
+|+|..+|.. .+ |. -...++.++..++.-+. .+. ..+...+++..|..++-++ -..+|+.
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence 9999988742 12 11 12356677777765321 222 3556779999999988776 3458999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCC----------HHHHHHHhc-cCCHHHHHHHHHHHHHhhc
Q 015687 345 EACWTISNITAGNVNQIQAIIEAGI----------IGPLVNLLL-NAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 345 ~a~~~L~nl~~~~~~~~~~l~~~~~----------i~~L~~ll~-~~~~~v~~~a~~aL~nl~~ 397 (402)
++..+++++..++......+.+..+ +-.++.+.. ...+..|.++.+++..+..
T Consensus 336 esiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~ 399 (970)
T KOG0946|consen 336 ESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLY 399 (970)
T ss_pred HHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHh
Confidence 9999999999988777666664221 222233333 3567889999888877654
No 54
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.06 E-value=3.9e-08 Score=90.45 Aligned_cols=315 Identities=13% Similarity=0.132 Sum_probs=203.1
Q ss_pred ccHHHHHHhhcCC-------CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhh
Q 015687 71 ESLPAMVAGVWSD-------DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIA 143 (402)
Q Consensus 71 ~~i~~l~~~l~s~-------~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~ 143 (402)
+.+|.++++|..+ |...-..|..+|.-+...- .+.+.+. ++...-+-+++++ ..-+..|+-+++.+.
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~----gd~i~~p-Vl~FvEqni~~~~-w~nreaavmAfGSvm 394 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK----GDKIMRP-VLGFVEQNIRSES-WANREAAVMAFGSVM 394 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh----hhHhHHH-HHHHHHHhccCch-hhhHHHHHHHhhhhh
Confidence 4689999998752 3455555655555543211 1122211 3333344556666 577899999999999
Q ss_pred cCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc--chhhHHHHHHH
Q 015687 144 SGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--HAKLSMLRNAT 221 (402)
Q Consensus 144 ~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~--~~~~~~~~~a~ 221 (402)
.+..+....-+-..++|.+...+.++..-+.+.++|+++.|+..-+ ..+-..|.++..+..... ...+....+++
T Consensus 395 ~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va---~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncs 471 (858)
T COG5215 395 HGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA---MIISPCGHLVLEVSASLIGLMDCPFRSINCS 471 (858)
T ss_pred cCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH---HhcCccccccHHHHHHHhhhhccchHHhhhH
Confidence 8866555554555789999999998888999999999999986533 455566777776665422 24567788999
Q ss_pred HHHHHhhhCCCCCc---hhhhhchHHHHHHhc------cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHH-----
Q 015687 222 WTLSNFCRGKPQPL---FEQTRPALPALERLI------HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR----- 287 (402)
Q Consensus 222 ~~L~~l~~~~~~~~---~~~~~~~l~~L~~lL------~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~----- 287 (402)
|...||..+-+... ...+.++.+.++.-| ..++...+..+..+|+.+....++....+. .|+...
T Consensus 472 w~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~-a~~~~~~~~kl 550 (858)
T COG5215 472 WRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDIL-AGFYDYTSKKL 550 (858)
T ss_pred HHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHH-HHHHHHHHHHH
Confidence 99999998863322 222334444444333 224566788888888877654443322221 122222
Q ss_pred ------HHHhcCCCC----hhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCC
Q 015687 288 ------LVELLRHPS----PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357 (402)
Q Consensus 288 ------L~~~L~~~~----~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~ 357 (402)
+-+.+..++ .+++.+-+..|..+.......+..+- ..++..++++|.+.....+-.....++++++..-
T Consensus 551 ~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~-D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl 629 (858)
T COG5215 551 DECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVE-DQLMELFIRILESTKPTTAFGDVYTAISALSTSL 629 (858)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHH-HHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHH
Confidence 222222222 35667777777777764443333222 2467788999988833356678888999998855
Q ss_pred HHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 358 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 358 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
.+........ ++|.|.+.|+..|..+...|...++.|+.
T Consensus 630 ~e~Fe~y~~~-fiPyl~~aln~~d~~v~~~avglvgdlan 668 (858)
T COG5215 630 EERFEQYASK-FIPYLTRALNCTDRFVLNSAVGLVGDLAN 668 (858)
T ss_pred HHHHHHHHhh-hhHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 5555555544 89999999998999999999999888764
No 55
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.05 E-value=1.8e-08 Score=92.62 Aligned_cols=300 Identities=14% Similarity=0.097 Sum_probs=191.6
Q ss_pred CHHHHHHHHHHHHHHhccCCCCchhHHhhcC-cH-HHHHHhhcCCCCHHHHHHHHHHHHH-hhcCCCcchHHHHhCC---
Q 015687 84 DRNIQLDATTQFRKLLSIERSPPINEVIQSG-VV-PRFIEFLSRDDFPQLQFEAAWALTN-IASGTSENTRVVIDHG--- 157 (402)
Q Consensus 84 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g-~i-~~L~~lL~~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~g--- 157 (402)
....+..++..+..++... .|-..+-.++ ++ .....-++.+.+..++..|+.+|.+ +... +..+...+
T Consensus 147 p~~~k~~sl~~~gy~ces~--~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv----~~nf~~E~erN 220 (858)
T COG5215 147 PVSGKCESLGICGYHCESE--APEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFV----QGNFCYEEERN 220 (858)
T ss_pred chHhHHHHHHHHHHHhhcc--CHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH----HHhhcchhhhc
Confidence 3567778888888886544 3322222222 22 2233344554447899999999877 3221 11111112
Q ss_pred -chHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCch
Q 015687 158 -AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236 (402)
Q Consensus 158 -~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 236 (402)
++...+..-+.++.+++..+..+|..|..-.-.+-...++..........+ ++++.++...+...++.+|........
T Consensus 221 y~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m-ks~nd~va~qavEfWsticeEeid~~~ 299 (858)
T COG5215 221 YFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM-KSQNDEVAIQAVEFWSTICEEEIDGEM 299 (858)
T ss_pred hhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchHHHHHHHHHHHHHHHHHhhhHH
Confidence 344555566779999999999999988754333333334432333333344 788889999999999888876411100
Q ss_pred -----------------hhhhchHHHHHHhccC-------CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc
Q 015687 237 -----------------EQTRPALPALERLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 292 (402)
Q Consensus 237 -----------------~~~~~~l~~L~~lL~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L 292 (402)
.....++|.|+++|.. +|..+...|..+|.-.+....+. +++. ++..+-.-+
T Consensus 300 e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~---i~~p-Vl~FvEqni 375 (858)
T COG5215 300 EDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK---IMRP-VLGFVEQNI 375 (858)
T ss_pred HHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH---hHHH-HHHHHHHhc
Confidence 1235689999999954 23445666666666555433322 2222 445555567
Q ss_pred CCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Q 015687 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP 372 (402)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~ 372 (402)
.++++.-++.+.-++|.+..+..+....-+-...+|.+...+.++ .-.++..++|+++.|+.+-++.+.. .|-++.
T Consensus 376 ~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~va~~i~p---~~Hl~~ 451 (858)
T COG5215 376 RSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIADHVAMIISP---CGHLVL 451 (858)
T ss_pred cCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHHHHHHhcCc---cccccH
Confidence 889999999999999999999887666666678999999999877 7889999999999998654433322 222222
Q ss_pred HHHH-hc--cCCHHHHHHHHHHHHHhhcC
Q 015687 373 LVNL-LL--NAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 373 L~~l-l~--~~~~~v~~~a~~aL~nl~~~ 398 (402)
.+.. +. .+.+.+..+++|+.-|++.+
T Consensus 452 ~vsa~liGl~D~p~~~~ncsw~~~nlv~h 480 (858)
T COG5215 452 EVSASLIGLMDCPFRSINCSWRKENLVDH 480 (858)
T ss_pred HHHHHHhhhhccchHHhhhHHHHHhHHHh
Confidence 2222 21 25688899999999998764
No 56
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=1.6e-07 Score=89.51 Aligned_cols=280 Identities=15% Similarity=0.222 Sum_probs=212.9
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCc---
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSP--- 189 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~--- 189 (402)
.|+.|++-+.+..-.+-|..|+..|..++. +++..+...| +++|++.|.. .|+++...++.++.++....+
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 488899888776556779999999998886 5777777655 8889998875 689999999999999985442
Q ss_pred ---hh----------hH-HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchh---hhhchHHHHHHhccC
Q 015687 190 ---KC----------RD-LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE---QTRPALPALERLIHS 252 (402)
Q Consensus 190 ---~~----------~~-~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~~~~l~~L~~lL~~ 252 (402)
.. .+ .+...+.|..++..+ ...|-.++..+...+.++....|..... ..+.++..++.+|.+
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 11 11 233567788888888 7788999999999999999887543332 226788899999999
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC----ChhhHHHHHHHHHHhhcCChHHHHHHHhCCChH
Q 015687 253 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP----SPSVLIPALRTVGNIVTGDDMQTQCIINHQALP 328 (402)
Q Consensus 253 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~----~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~ 328 (402)
.-+.|+-+++..|+.++..++...+.+.=.+++.+|..++..+ ..-|...|+..+.|+...+......+.+.+.+|
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~ 257 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP 257 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence 9999999999999999988776544444458999999999654 246888999999999999888888888999999
Q ss_pred HHHHHhcCCC--c--------hhH--HHHHHHHHHHHhc-CCH----HHH-HHHHHcCCHHHHHHHhccC--CHHHHHHH
Q 015687 329 CLLDLLTQNY--K--------KSI--KKEACWTISNITA-GNV----NQI-QAIIEAGIIGPLVNLLLNA--EFEIKKEA 388 (402)
Q Consensus 329 ~L~~ll~~~~--~--------~~v--~~~a~~~L~nl~~-~~~----~~~-~~l~~~~~i~~L~~ll~~~--~~~v~~~a 388 (402)
.|.++|.... + ..| ...+..++..+.. +++ .+. ..+...+++..|+.++-++ ..+|+.++
T Consensus 258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes 337 (970)
T KOG0946|consen 258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES 337 (970)
T ss_pred HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence 9998885431 1 111 1345555555554 322 222 3455788999999998765 46899999
Q ss_pred HHHHHHhhcCC
Q 015687 389 AWAISNATSGG 399 (402)
Q Consensus 389 ~~aL~nl~~~~ 399 (402)
..++++.+.|.
T Consensus 338 iitvAevVRgn 348 (970)
T KOG0946|consen 338 IITVAEVVRGN 348 (970)
T ss_pred HHHHHHHHHhc
Confidence 99999988764
No 57
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.03 E-value=6.8e-09 Score=93.82 Aligned_cols=222 Identities=18% Similarity=0.252 Sum_probs=154.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhh------cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCC
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQ------SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 147 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~------~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~ 147 (402)
-.+++.+ +.+++.....+..+..+++.. +...+.+.. ......|++++..+| ..++..|+.+|+.++...+
T Consensus 61 l~lL~~~-~~~~d~v~yvL~li~dll~~~-~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D-~~i~~~a~~iLt~Ll~~~~ 137 (312)
T PF03224_consen 61 LNLLNKL-SSNDDTVQYVLTLIDDLLSDD-PSRVELFLELAKQDDSDPYSPFLKLLDRND-SFIQLKAAFILTSLLSQGP 137 (312)
T ss_dssp -HHHHHH----HHHHHHHHHHHHHHHH-S-SSSHHHHHHHHH-TTH--HHHHHHH-S-SS-HHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHc-cCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHhcccccchhHHHHHHHhcCCC-HHHHHHHHHHHHHHHHcCC
Confidence 3555555 578888999999999998865 333444443 236788888888887 8999999999999988755
Q ss_pred cchHHHHhCCchHHHHHhhCC----CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHh------ccchhhHHH
Q 015687 148 ENTRVVIDHGAVPIFVRLLSS----PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF------NEHAKLSML 217 (402)
Q Consensus 148 ~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l------~~~~~~~~~ 217 (402)
....... .+.++.++.++.+ ++.+++..++.+|.++.... .+|..+.+.|+++.+..++ ....+.+++
T Consensus 138 ~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~-~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~ 215 (312)
T PF03224_consen 138 KRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK-EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ 215 (312)
T ss_dssp T--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH-HHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred ccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc-hhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence 5544433 3567777777664 55677899999999998654 4899999999999999999 456688999
Q ss_pred HHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccC-CChhHHHHHHHHHHHhccCChH-HHHHHHHhCcHHHHHHhcCC-
Q 015687 218 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTND-KIQAVIEAGVCPRLVELLRH- 294 (402)
Q Consensus 218 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~i~~L~~~L~~- 294 (402)
..++.+++.|+..++........+++|.++.+++. ..++|..-++.++.|+.....+ ....++..|+++.+-.+...
T Consensus 216 Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk 295 (312)
T PF03224_consen 216 YQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERK 295 (312)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS-
T ss_pred HHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCC
Confidence 99999999999885444444446699999999965 4788999999999999976653 66778888876666555532
Q ss_pred -CChhhH
Q 015687 295 -PSPSVL 300 (402)
Q Consensus 295 -~~~~v~ 300 (402)
.|+++.
T Consensus 296 ~~Dedl~ 302 (312)
T PF03224_consen 296 WSDEDLT 302 (312)
T ss_dssp -SSHHHH
T ss_pred CCCHHHH
Confidence 344443
No 58
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.97 E-value=5e-08 Score=92.26 Aligned_cols=318 Identities=13% Similarity=0.147 Sum_probs=204.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhcCCCcchH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
+..++.-++++.+..+...+....++++.-....+++-.+...+..++..++.++ ...+......++.+-..+ ....
T Consensus 718 v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~--r~kp 795 (1172)
T KOG0213|consen 718 VSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG--RVKP 795 (1172)
T ss_pred HHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh--cccc
Confidence 5667777788888888778777777765432223333334444555555555433 123444444444442221 0000
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhh--HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR--DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~--~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
. -..++...+..|++.++.+|++|+..++.++.--..+. ..+-..|. .|...| ...+++++-..+.++..++.
T Consensus 796 y--lpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI~n 870 (1172)
T KOG0213|consen 796 Y--LPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAIVN 870 (1172)
T ss_pred c--hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHHHH
Confidence 0 11356677888999999999999999999873221111 12222222 244555 66788999888888888876
Q ss_pred CC-CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHH
Q 015687 230 GK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308 (402)
Q Consensus 230 ~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~ 308 (402)
.- -.....-+.+++|.|.++|++....|+++++..++.+++..++.+..--=..+.-.|+++|...+..+|..|..++|
T Consensus 871 vigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG 950 (1172)
T KOG0213|consen 871 VIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFG 950 (1172)
T ss_pred hccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 54 12223344789999999999999999999999999999876654331111245566888888888899999999999
Q ss_pred HhhcC--ChHHHHHHH----------------------h-CC---ChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHH
Q 015687 309 NIVTG--DDMQTQCII----------------------N-HQ---ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 360 (402)
Q Consensus 309 nl~~~--~~~~~~~i~----------------------~-~~---~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~ 360 (402)
-|+.. ..+....++ + .| ++|.|+.=...+ +..|+.....+++.+.....+.
T Consensus 951 ~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP-e~nVQnGVLkalsf~Feyigem 1029 (1172)
T KOG0213|consen 951 YIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP-EANVQNGVLKALSFMFEYIGEM 1029 (1172)
T ss_pred HHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc-hhHHHHhHHHHHHHHHHHHHHH
Confidence 88752 222222111 1 23 344444444455 6678888888888887632233
Q ss_pred HHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 361 IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 361 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
-...+-. +.|.|-+.|.+.|.--|.-|+.++..++-+.
T Consensus 1030 skdYiya-v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1030 SKDYIYA-VTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred hhhHHHH-hhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence 2333322 7889999999999999999999999998764
No 59
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=8.2e-08 Score=93.99 Aligned_cols=248 Identities=16% Similarity=0.203 Sum_probs=195.2
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
+.+|.+++-|-|+- =++.|+..|.+++... ...+.....-|++|..+++|+++. .+++..-+.+-+.|...++.+.
T Consensus 472 eQLPiVLQVLLSQv--HRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ 547 (1387)
T KOG1517|consen 472 EQLPIVLQVLLSQV--HRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQ 547 (1387)
T ss_pred HhcchHHHHHHHHH--HHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhH
Confidence 35677777665533 3566888888988664 667777888999999999999998 8999999999999888778888
Q ss_pred HHHHhCCchHHHHHhhCC---CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHh
Q 015687 151 RVVIDHGAVPIFVRLLSS---PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l 227 (402)
..+++.++-.++++.|.. -+++-+..|+.+|+.++.+-+-.+..+.+.+.+...+..++.++.+-++..+|-+|..|
T Consensus 548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L 627 (1387)
T KOG1517|consen 548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL 627 (1387)
T ss_pred HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 888888888899998876 24688999999999999888878889999999999999996555778889999999999
Q ss_pred hhCCCCCchhh-hhchHHHHHHhccCCChhHHHHHHHHHHHhccC----ChHHHHHH------------HHhCcH---HH
Q 015687 228 CRGKPQPLFEQ-TRPALPALERLIHSNDDEVLTDACWALSYLSDG----TNDKIQAV------------IEAGVC---PR 287 (402)
Q Consensus 228 ~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~----~~~~~~~~------------~~~~~i---~~ 287 (402)
-++.+.....- ...+...|..+|.++-++|+..|+.+|+.+... .++....+ ++.-+. ..
T Consensus 628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ 707 (1387)
T KOG1517|consen 628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS 707 (1387)
T ss_pred hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence 98875554443 367888999999999999999999999988764 23222222 222222 25
Q ss_pred HHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHH
Q 015687 288 LVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII 322 (402)
Q Consensus 288 L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~ 322 (402)
++..++...+-++....-+++.++.+.......+.
T Consensus 708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va 742 (1387)
T KOG1517|consen 708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVA 742 (1387)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence 66777888899999999999999887665544443
No 60
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.88 E-value=1.6e-07 Score=84.50 Aligned_cols=268 Identities=13% Similarity=0.093 Sum_probs=179.9
Q ss_pred ccHHHHHHhhcCCCHH--HHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCc
Q 015687 71 ESLPAMVAGVWSDDRN--IQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 148 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~--~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 148 (402)
+.+..|++++++.+.+ ++..+...|..+++. .+.+.+...| +..++.+-+....++.+...+.+|.++..++.+
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 5789999999998754 488999999999864 4566666655 445555555444478999999999999999999
Q ss_pred chHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHh
Q 015687 149 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (402)
Q Consensus 149 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l 227 (402)
....++..|++..++......++.+...|+-+|+|++-+ ....+..+++..+-+-|..+. .+.|.-++.++|.+.+.|
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999854 344566677766777776666 566888899999999999
Q ss_pred hhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHH
Q 015687 228 CRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307 (402)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l 307 (402)
...+.......-.+.+..+-+++.+-||.-... --..-+.+. ...-+++|+++|.+..-+.+.-+.+-+
T Consensus 335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~R~EAq~i~AF~l 403 (832)
T KOG3678|consen 335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSNRLEAQCIGAFYL 403 (832)
T ss_pred hhhhhhhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence 988643333333444544445555555442211 011111111 113468899999865444443333333
Q ss_pred HHhhcC--ChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 308 GNIVTG--DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 308 ~nl~~~--~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
..=+.. .....+.+-+-|.+..|-.+.+++ +....+.|..+|.-|..
T Consensus 404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIGE 452 (832)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhcc
Confidence 222211 112234444668999999999877 65444445555554443
No 61
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.85 E-value=1.5e-06 Score=80.43 Aligned_cols=241 Identities=17% Similarity=0.061 Sum_probs=165.5
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 72 SLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 72 ~i~~l~~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
.++.++..|. .++.+....++..+... + .+. .+..|++.|.+.+ +.++..++.+|+.+-..
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~---~-~~~--------~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~~----- 116 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQ---E-DAL--------DLRSVLAVLQAGP-EGLCAGIQAALGWLGGR----- 116 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhcc---C-ChH--------HHHHHHHHhcCCC-HHHHHHHHHHHhcCCch-----
Confidence 4567777774 45555555444444321 1 111 2788899998887 78999999999865442
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
+..+.|+.+|.+.++.++..++.+++..-. ...+.+...+ ++.++.++..++.++..+...
T Consensus 117 ------~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 117 ------QAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPRR 177 (410)
T ss_pred ------HHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence 568888999999999999888887776221 1345777888 688999999999999887754
Q ss_pred CCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 015687 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (402)
Q Consensus 231 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl 310 (402)
..++.|...+.+.|+.|+..+++++..+.. +. .+..+..+...........+..+++..
T Consensus 178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLEGGPHRQRLLVLLAVA 236 (410)
T ss_pred ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhccCccHHHHHHHHHHhC
Confidence 456667788899999999999999977643 21 123444444444444444444444333
Q ss_pred hcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHH
Q 015687 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW 390 (402)
Q Consensus 311 ~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 390 (402)
+.+ ..++.|..++.++ .++..++++++.+.. +. .++.|+..+.+. .++..|.+
T Consensus 237 --~~~---------~a~~~L~~ll~d~---~vr~~a~~AlG~lg~--p~---------av~~L~~~l~d~--~~aR~A~e 289 (410)
T TIGR02270 237 --GGP---------DAQAWLRELLQAA---ATRREALRAVGLVGD--VE---------AAPWCLEAMREP--PWARLAGE 289 (410)
T ss_pred --Cch---------hHHHHHHHHhcCh---hhHHHHHHHHHHcCC--cc---------hHHHHHHHhcCc--HHHHHHHH
Confidence 222 4567788888765 389999999997643 33 567777777643 38889999
Q ss_pred HHHHhhc
Q 015687 391 AISNATS 397 (402)
Q Consensus 391 aL~nl~~ 397 (402)
++..|+.
T Consensus 290 A~~~ItG 296 (410)
T TIGR02270 290 AFSLITG 296 (410)
T ss_pred HHHHhhC
Confidence 9888875
No 62
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=5.2e-06 Score=78.79 Aligned_cols=217 Identities=17% Similarity=0.187 Sum_probs=159.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHH
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 153 (402)
+.++.+|++.-+-++..|+..+.++.-.- ++..+ ..+|.|++-|.++| +.++..|+.+++.+|..+|.+.-
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL-- 217 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYL-- 217 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCcccc--
Confidence 56777888888888888888888775432 22222 25899999999999 99999999999999998877643
Q ss_pred HhCCchHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHH--hhhC
Q 015687 154 IDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN--FCRG 230 (402)
Q Consensus 154 ~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~--l~~~ 230 (402)
..-|.|..+|. +.|.-+.-..+..+++|+---|..... .+++|.+++....-.++...+.-++.. ++.+
T Consensus 218 ---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 218 ---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred ---cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 35678888775 456666677888889888766654333 678999998443344455555544432 2322
Q ss_pred CCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 015687 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (402)
Q Consensus 231 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl 310 (402)
-......+.-++..|-.++.++|+.+.+-++-+++.+....+..++.. -+.++.+|.+.++.+|..|+..+--+
T Consensus 290 -~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gm 363 (877)
T KOG1059|consen 290 -MSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYGM 363 (877)
T ss_pred -CCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHHH
Confidence 123345556788888889999999999999999999998777554422 46789999999999999999999888
Q ss_pred hcC
Q 015687 311 VTG 313 (402)
Q Consensus 311 ~~~ 313 (402)
+..
T Consensus 364 Vsk 366 (877)
T KOG1059|consen 364 VSK 366 (877)
T ss_pred hhh
Confidence 753
No 63
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.83 E-value=2.9e-07 Score=83.00 Aligned_cols=272 Identities=17% Similarity=0.198 Sum_probs=186.1
Q ss_pred hhHHhhcCcHHHHHHhhcCCCC-HHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhC-CCCHHHHHHHHHHHHHh
Q 015687 107 INEVIQSGVVPRFIEFLSRDDF-PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNV 184 (402)
Q Consensus 107 ~~~~~~~g~i~~L~~lL~~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl 184 (402)
.+.+...|.+..|+.++..++. ..++.+|+..|..+.. .++++.+...| +..++.+-+ ....+.....+..|.++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 4556677889999999998762 3569999999999887 67888888877 555555544 35678899999999999
Q ss_pred hCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC-CCCchhhh-hchHHHHHHhccCCChhHHHHHH
Q 015687 185 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQT-RPALPALERLIHSNDDEVLTDAC 262 (402)
Q Consensus 185 ~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~ 262 (402)
..++++....++..|+++.++-.+ ...++.+.++++.+|.|+.-+. ...+..++ ..+-+-|..+-.+.|+-.+..+|
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 999998889999999999999888 6778999999999999998775 22233333 44555566666777888999999
Q ss_pred HHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhH
Q 015687 263 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSI 342 (402)
Q Consensus 263 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v 342 (402)
-+++.++...+. -..+..+|-+..+-+++.+-++.-... --...+.+.. ...++.|+.+|++. .-+.
T Consensus 329 lAV~vlat~KE~-E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~~--------~d~LqRLvPlLdS~-R~EA 395 (832)
T KOG3678|consen 329 LAVAVLATNKEV-EREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGRG--------PDDLQRLVPLLDSN-RLEA 395 (832)
T ss_pred HHHhhhhhhhhh-hHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccCC--------hHHHHHhhhhhhcc-hhhh
Confidence 999999865542 234556676665555655544421111 1111112111 13467889999877 6666
Q ss_pred HHHHHHHHHHHhc-CCHH-HHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 343 KKEACWTISNITA-GNVN-QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 343 ~~~a~~~L~nl~~-~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
+..+++-++.=++ .+.. ....+-+-|.|..|-++..+.+.--.+-|-.+|.-|
T Consensus 396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI 450 (832)
T ss_pred hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 6555555553333 1122 223344678899999998876654444444444433
No 64
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=4.4e-08 Score=89.48 Aligned_cols=280 Identities=17% Similarity=0.234 Sum_probs=194.2
Q ss_pred HHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 015687 109 EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 188 (402)
Q Consensus 109 ~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~ 188 (402)
.+.+..+.+.|+++|+.++ ..+..-+...++|..-.-+..+..+.+.|+|..|+.++.+.+..++....|.+.++..++
T Consensus 426 gL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmync 504 (743)
T COG5369 426 GLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNC 504 (743)
T ss_pred hccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcC
Confidence 3557788999999999987 677888888999988776778888999999999999999999999999999999998765
Q ss_pred ch-hhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCC-C-chhhh------hchHHHHHHhccCCChhHHH
Q 015687 189 PK-CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-P-LFEQT------RPALPALERLIHSNDDEVLT 259 (402)
Q Consensus 189 ~~-~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~-~~~~~------~~~l~~L~~lL~~~~~~v~~ 259 (402)
.. .+-..+..-++..++.+. .++.-.++..+...|.|+..+... . ...+. .-++..+++.+...+|-...
T Consensus 505 q~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~ 583 (743)
T COG5369 505 QKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEIL 583 (743)
T ss_pred cchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhh
Confidence 43 233555666888999998 788889999999999999874311 1 11111 22566777888888888788
Q ss_pred HHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhcC----C-------CChhhHHHHHHHHHHhhcCChHHHHHHHhCCCh
Q 015687 260 DACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLR----H-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQAL 327 (402)
Q Consensus 260 ~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~~L~----~-------~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l 327 (402)
..|..|.+++..++...+.+.+. ..+..+.++|. . ....+..+-....-++....+.... +..
T Consensus 584 ~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r-----~~~ 658 (743)
T COG5369 584 EGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKR-----LVL 658 (743)
T ss_pred hhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccccccccccc-----cee
Confidence 88999999887766555544433 45555555541 1 1223333444444444433222111 111
Q ss_pred --HHHHHHhcCC--CchhHHHHHHHHHHHHhc---CCH------HHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHH
Q 015687 328 --PCLLDLLTQN--YKKSIKKEACWTISNITA---GNV------NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394 (402)
Q Consensus 328 --~~L~~ll~~~--~~~~v~~~a~~~L~nl~~---~~~------~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~n 394 (402)
|.+-..=..+ .+.++-.+..|.+.|+.- ++. +.++.+++.|+-+.|..+-..+++.||+.+-.||.+
T Consensus 659 ~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~ 738 (743)
T COG5369 659 TTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALEN 738 (743)
T ss_pred cCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHh
Confidence 2222111111 144577788898888763 233 667778888888888777777888999999999988
Q ss_pred h
Q 015687 395 A 395 (402)
Q Consensus 395 l 395 (402)
+
T Consensus 739 l 739 (743)
T COG5369 739 L 739 (743)
T ss_pred h
Confidence 6
No 65
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=3.7e-06 Score=78.88 Aligned_cols=300 Identities=19% Similarity=0.178 Sum_probs=196.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHH-HHHHHHHhhcCCCcchH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFE-AAWALTNIASGTSENTR 151 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~-a~~~L~~l~~~~~~~~~ 151 (402)
.+.+.+.+.+.+...+..+...+..++. ...+..+.+.+++..|...+.+.. .....+ +..+.......-.
T Consensus 136 l~~l~~ll~~~~~~~~~~aa~~~ag~v~---g~~i~~~~~~~~l~~l~~ai~dk~-~~~~re~~~~a~~~~~~~Lg---- 207 (569)
T KOG1242|consen 136 LELLLELLTSTKIAERAGAAYGLAGLVN---GLGIESLKEFGFLDNLSKAIIDKK-SALNREAALLAFEAAQGNLG---- 207 (569)
T ss_pred HHHHHHHhccccHHHHhhhhHHHHHHHc---CcHHhhhhhhhHHHHHHHHhcccc-hhhcHHHHHHHHHHHHHhcC----
Confidence 4566667777777778888888877763 456667778888999999888776 333333 3333332222111
Q ss_pred HHHhCCc---hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhh
Q 015687 152 VVIDHGA---VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (402)
Q Consensus 152 ~~~~~g~---i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~ 228 (402)
...+.++ +|.++.-..+....+|+.|..+...+...-+.+.-.. .++.++.-+.. ..-.....++..+..+.
T Consensus 208 ~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~----llpsll~~l~~-~kWrtK~aslellg~m~ 282 (569)
T KOG1242|consen 208 PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL----LLPSLLGSLLE-AKWRTKMASLELLGAMA 282 (569)
T ss_pred CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH----hhhhhHHHHHH-HhhhhHHHHHHHHHHHH
Confidence 1222334 4444444556788999988888877754332221111 34444444412 24456677888888777
Q ss_pred hCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHH
Q 015687 229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307 (402)
Q Consensus 229 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l 307 (402)
...|..-......++|.+.+.|.+..++++..+..++..++.-.+ ..++ ..+|.|++.+.++...+ ..++..|
T Consensus 283 ~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~-----~~ip~Lld~l~dp~~~~-~e~~~~L 356 (569)
T KOG1242|consen 283 DCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ-----KIIPTLLDALADPSCYT-PECLDSL 356 (569)
T ss_pred HhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH-----HHHHHHHHHhcCcccch-HHHHHhh
Confidence 775655556668999999999999999999999999988875322 1233 24688888888776333 3445555
Q ss_pred HHhhcCC--hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHhccCCHH
Q 015687 308 GNIVTGD--DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLNAEFE 383 (402)
Q Consensus 308 ~nl~~~~--~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 383 (402)
+.-..-. +...- +-++|.|.+-+... +..+++.++-++.|+|. .++..+..++.. ++|.|-..+.+..|+
T Consensus 357 ~~ttFV~~V~~psL----almvpiL~R~l~eR-st~~kr~t~~IidNm~~LveDp~~lapfl~~-Llp~lk~~~~d~~PE 430 (569)
T KOG1242|consen 357 GATTFVAEVDAPSL----ALMVPILKRGLAER-STSIKRKTAIIIDNMCKLVEDPKDLAPFLPS-LLPGLKENLDDAVPE 430 (569)
T ss_pred cceeeeeeecchhH----HHHHHHHHHHHhhc-cchhhhhHHHHHHHHHHhhcCHHHHhhhHHH-HhhHHHHHhcCCChh
Confidence 4433211 11111 12345666666666 77899999999999998 367777777765 888888888888999
Q ss_pred HHHHHHHHHHHhhc
Q 015687 384 IKKEAAWAISNATS 397 (402)
Q Consensus 384 v~~~a~~aL~nl~~ 397 (402)
+|..|..||+.+..
T Consensus 431 vR~vaarAL~~l~e 444 (569)
T KOG1242|consen 431 VRAVAARALGALLE 444 (569)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999977654
No 66
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.74 E-value=5.5e-06 Score=80.89 Aligned_cols=320 Identities=13% Similarity=0.128 Sum_probs=194.8
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHH
Q 015687 75 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 154 (402)
Q Consensus 75 ~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 154 (402)
.+++.+.+.|.+.++.|+.-|.+=+... ....+.--+..++..++++|++.+ .++|..|+.|++-+++.-++.+ +.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~--le 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQ--LE 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHH--HH
Confidence 7888999999999999999888776543 333333334557899999999988 8999999999999986433222 21
Q ss_pred hCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhc----cc-hhhHHHHHHHHHHHHhhh
Q 015687 155 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN----EH-AKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 155 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~----~~-~~~~~~~~a~~~L~~l~~ 229 (402)
-++..|+.-+-+.....+..+.-.|.....+-+..........+.+.+...+. .. ....++-.++..+.....
T Consensus 85 --~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 85 --TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred --HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 24556666544455555555544444433332222223333334444544442 22 233355556655555444
Q ss_pred CCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCC-hHHHHHHHH---------------------------
Q 015687 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT-NDKIQAVIE--------------------------- 281 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~--------------------------- 281 (402)
....--..+-...+..++.-+.+.-..|+..++.+|+.++... .+....+++
T Consensus 163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r 242 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICR 242 (1233)
T ss_pred hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH
Confidence 3321111133455666666777777788888888888776422 111111110
Q ss_pred ----------hCcHHHHHHhc---CCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCC----------
Q 015687 282 ----------AGVCPRLVELL---RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY---------- 338 (402)
Q Consensus 282 ----------~~~i~~L~~~L---~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~---------- 338 (402)
..+++.+.++. ..++++.++.++.+++.+....+..+-.... .++..++..+..+.
T Consensus 243 ~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~yd~~eDe 321 (1233)
T KOG1824|consen 243 QAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVP-EIINLCLSYISYDPNYNYDTEEDE 321 (1233)
T ss_pred HhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccch-HHHHHHHHHhccCCCCCCCCccch
Confidence 12455555555 4556788888888888888766643321111 22333333332210
Q ss_pred -----------------------chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 339 -----------------------KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 339 -----------------------~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
+-.||++|+.++..+.....+....+... +-|.++.-++.-+..|+-....+...+
T Consensus 322 d~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~-l~p~lI~RfkEREEnVk~dvf~~yi~l 400 (1233)
T KOG1824|consen 322 DAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQT-LGPALISRFKEREENVKADVFHAYIAL 400 (1233)
T ss_pred hhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHH-hCHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 12589999999998888767766665554 678899999988888988888887777
Q ss_pred hcCCCCC
Q 015687 396 TSGGSSW 402 (402)
Q Consensus 396 ~~~~~~~ 402 (402)
...-..|
T Consensus 401 l~qt~~~ 407 (1233)
T KOG1824|consen 401 LKQTRPV 407 (1233)
T ss_pred HHcCCCC
Confidence 6665555
No 67
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=3.4e-06 Score=72.32 Aligned_cols=268 Identities=14% Similarity=0.122 Sum_probs=169.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHH--hCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhH
Q 015687 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI--DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193 (402)
Q Consensus 116 i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 193 (402)
+..+++++.+.+ |.++..|+..+..++.. ..+.+. +.-.++.+.+++....+ .+.|+.+|.|++.+.. .+.
T Consensus 5 l~elv~ll~~~s-P~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~ 77 (353)
T KOG2973|consen 5 LVELVELLHSLS-PPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRK 77 (353)
T ss_pred HHHHHHHhccCC-hHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHH
Confidence 456889999988 99999999999888875 222222 23467889999987666 7789999999997765 677
Q ss_pred HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhh-------hhchHHHHHHhccCCCh--hHHHHHHHH
Q 015687 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ-------TRPALPALERLIHSNDD--EVLTDACWA 264 (402)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-------~~~~l~~L~~lL~~~~~--~v~~~a~~~ 264 (402)
.++.. .+..++..+ .++........|..|+|+++......... ..+.+.........+-. .-.......
T Consensus 78 ~ll~~-~~k~l~~~~-~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 78 KLLQD-LLKVLMDML-TDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHHH-HHHHHHHHh-cCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 77776 677777777 55666778889999999998852211111 12333333333333211 234556667
Q ss_pred HHHhccCChHHHHHHHHhCc--HHHHHHhcCCCChhhH-HHHHHHHHHhhcCChHHHHHHHhC--CChHHHHHHhcCC--
Q 015687 265 LSYLSDGTNDKIQAVIEAGV--CPRLVELLRHPSPSVL-IPALRTVGNIVTGDDMQTQCIINH--QALPCLLDLLTQN-- 337 (402)
Q Consensus 265 l~~l~~~~~~~~~~~~~~~~--i~~L~~~L~~~~~~v~-~~a~~~l~nl~~~~~~~~~~i~~~--~~l~~L~~ll~~~-- 337 (402)
++|++.....+ ..+.+... .+.+..+=. .+..+| ...+.+|.|+|.....+-. +++. .++|.++--+..+
T Consensus 156 f~nls~~~~gR-~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee 232 (353)
T KOG2973|consen 156 FANLSQFEAGR-KLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEE 232 (353)
T ss_pred HHHHhhhhhhh-hHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCccc
Confidence 78888665544 44444432 223333333 444454 4578889998876553332 2221 3444444333221
Q ss_pred -----------------------CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHH
Q 015687 338 -----------------------YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAIS 393 (402)
Q Consensus 338 -----------------------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~ 393 (402)
.++.+|+...-+|.-||+. ...++.+.+.|+.|.|-.+-.. .++++++.+-..+.
T Consensus 233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq 311 (353)
T KOG2973|consen 233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQ 311 (353)
T ss_pred cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 1688999999999999885 4557788888888777776554 55677665554444
Q ss_pred Hhh
Q 015687 394 NAT 396 (402)
Q Consensus 394 nl~ 396 (402)
-+.
T Consensus 312 ~Lv 314 (353)
T KOG2973|consen 312 MLV 314 (353)
T ss_pred HHH
Confidence 433
No 68
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.72 E-value=2.5e-06 Score=76.24 Aligned_cols=264 Identities=11% Similarity=0.153 Sum_probs=174.9
Q ss_pred HHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhc-CCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 75 AMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS-RDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 75 ~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
.+...+++ .+.+....++.+|..++.. ++....++..+++..++..+. +.-.-++|++.+.|+.-++.. +...+.
T Consensus 160 ~l~~~l~~~~~~~~~~~~~rcLQ~ll~~--~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~ae~ 236 (442)
T KOG2759|consen 160 FLKEQLQSSTNNDYIQFAARCLQTLLRV--DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-PHAAEK 236 (442)
T ss_pred HHHHHHhccCCCchHHHHHHHHHHHhcC--cchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-HHHHHH
Confidence 34445555 5667777788889888753 355666778888999999884 332368999999999999885 666677
Q ss_pred HHhCCchHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCch------hhHHHHhcCChHHHHHHhcc--chhhHHHHHHHHH
Q 015687 153 VIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPK------CRDLVLSNGALMPLLAQFNE--HAKLSMLRNATWT 223 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~------~~~~~~~~g~i~~L~~~l~~--~~~~~~~~~a~~~ 223 (402)
+...+.|+.|..++++ ..+.|.+.++.++.|++...+. ....++ .+.+++.++.|.. ..|+++....-..
T Consensus 237 ~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv-~~~v~k~l~~L~~rkysDEDL~~di~~L 315 (442)
T KOG2759|consen 237 LKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMV-LCKVLKTLQSLEERKYSDEDLVDDIEFL 315 (442)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHH-hcCchHHHHHHHhcCCCcHHHHHHHHHH
Confidence 7778999999999985 6778889999999999976641 112223 3455566666633 3466665554443
Q ss_pred HHHhhhCC-CCCchhhhhchHHHHH-HhccCCChhHHHHHHHHHHHhccCChHHHHHHHHh--CcHHHHHHhcCCC-Chh
Q 015687 224 LSNFCRGK-PQPLFEQTRPALPALE-RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVELLRHP-SPS 298 (402)
Q Consensus 224 L~~l~~~~-~~~~~~~~~~~l~~L~-~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~i~~L~~~L~~~-~~~ 298 (402)
-..|-... .-..+ .....-+- ..|. -+|.=...-.|- +....+-+. .++..|+.+|... ++.
T Consensus 316 ~e~L~~svq~LsSF---DeY~sEl~sG~L~-WSP~Hk~e~FW~---------eNa~rlnennyellkiL~~lLe~s~Dp~ 382 (442)
T KOG2759|consen 316 TEKLKNSVQDLSSF---DEYKSELRSGRLE-WSPVHKSEKFWR---------ENADRLNENNYELLKILIKLLETSNDPI 382 (442)
T ss_pred HHHHHHHHHhhccH---HHHHHHHHhCCcC-CCccccccchHH---------HhHHHHhhccHHHHHHHHHHHhcCCCCc
Confidence 33333221 11111 01111111 1111 111111111110 111222222 3678899999655 578
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 015687 299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (402)
Q Consensus 299 v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 356 (402)
+..-|+.=||..+...|+....+.+.|+-..++++++++ +|+||.+|..++.-+..+
T Consensus 383 iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 383 ILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALLAVQKLMVH 439 (442)
T ss_pred eeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHHHHHHHHhh
Confidence 888999999999999999999899999999999999999 999999999998877543
No 69
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=1e-06 Score=84.37 Aligned_cols=265 Identities=19% Similarity=0.201 Sum_probs=172.0
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHH
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (402)
+...+...+++.+ +-++..|+.+..++-.. ..+.+.+.|.++.|..++.+.++.+...|+.+|..|....+..-..
T Consensus 122 ~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~ 197 (734)
T KOG1061|consen 122 LCDPLLKCLKDDD-PYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL 197 (734)
T ss_pred HHHHHHHhccCCC-hhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc
Confidence 3567778888888 89999999988887654 3456778899999999999999999999999999998766531111
Q ss_pred HHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChH
Q 015687 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 274 (402)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~ 274 (402)
.+....+..++..+ +.-....-+..+-.++...|... .....++..+...|.+.++.+...+...+.++......
T Consensus 198 ~l~~~~~~~lL~al----~ec~EW~qi~IL~~l~~y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~ 272 (734)
T KOG1061|consen 198 ELNPQLINKLLEAL----NECTEWGQIFILDCLAEYVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ 272 (734)
T ss_pred cccHHHHHHHHHHH----HHhhhhhHHHHHHHHHhcCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH
Confidence 11112233333333 33334455566677777766555 44466778888888999999888888888888765554
Q ss_pred HHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHH--------------------------hCC---
Q 015687 275 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII--------------------------NHQ--- 325 (402)
Q Consensus 275 ~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~--------------------------~~~--- 325 (402)
. ...+-..+-++++.+++... .++.-+++-+.-+....+.....-+ +++
T Consensus 273 ~-~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~q 350 (734)
T KOG1061|consen 273 V-NELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQ 350 (734)
T ss_pred H-HHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHH
Confidence 2 33333456677888887766 6777777777766655443211000 111
Q ss_pred ChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 326 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 326 ~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
++.-+...-..- +.+..+++++++++++..-++. +++++.|+++++..-..+..+++..+..+..
T Consensus 351 vl~El~eYatev-D~~fvrkaIraig~~aik~e~~------~~cv~~lLell~~~~~yvvqE~~vvi~dilR 415 (734)
T KOG1061|consen 351 VLAELKEYATEV-DVDFVRKAVRAIGRLAIKAEQS------NDCVSILLELLETKVDYVVQEAIVVIRDILR 415 (734)
T ss_pred HHHHHHHhhhhh-CHHHHHHHHHHhhhhhhhhhhh------hhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence 222222222233 6778899999999998742221 4566666777665555555555555555543
No 70
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.67 E-value=3.5e-07 Score=85.02 Aligned_cols=237 Identities=14% Similarity=0.132 Sum_probs=159.0
Q ss_pred CchHHHHHhhCCCCHHHHHHHHHHHHHhhCC---CchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC-
Q 015687 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGD---SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP- 232 (402)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~---~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~- 232 (402)
-++...+.+|+++.+.+|++|+...+.|+.- ..+. ..+...|.+ |.+-+ ...++++.-..+.+++.+.....
T Consensus 604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~-~~l~klg~i--LyE~l-ge~ypEvLgsil~Ai~~I~sv~~~ 679 (975)
T COG5181 604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGET-KELAKLGNI--LYENL-GEDYPEVLGSILKAICSIYSVHRF 679 (975)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchH-HHHHHHhHH--HHHhc-CcccHHHHHHHHHHHHHHhhhhcc
Confidence 3577888899999999999999999988632 1111 222232222 33344 45678888888888877765532
Q ss_pred CCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 015687 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 233 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
..-..-+.+++|.|.++|++...++..+....++.++...++.+..--=..+.-.|++.|.+.+.+++..|..++|-++.
T Consensus 680 ~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 680 RSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred cccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 11222347899999999999999999999999999998776543311112355667888888899999999999888875
Q ss_pred C--ChHHHHHHH----------------------h-CCChHHHHHHh---cCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 015687 313 G--DDMQTQCII----------------------N-HQALPCLLDLL---TQNYKKSIKKEACWTISNITAGNVNQIQAI 364 (402)
Q Consensus 313 ~--~~~~~~~i~----------------------~-~~~l~~L~~ll---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 364 (402)
. ..+....++ + .|.+..|-.++ ..+ +..|+.....+++.+.....+.-...
T Consensus 760 aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TP-e~nVQnGvLkam~fmFeyig~~s~dY 838 (975)
T COG5181 760 AIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETP-EANVQNGVLKAMCFMFEYIGQASLDY 838 (975)
T ss_pred hcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCc-hhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 2 222222111 1 24344444444 444 56778777777777765322222222
Q ss_pred HHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 365 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 365 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
+-. +.|.|-+.|.+.|+--|..|...+..++-++
T Consensus 839 vy~-itPlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 839 VYS-ITPLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred HHH-hhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 222 6788889999999999999999999988764
No 71
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=3.9e-05 Score=66.57 Aligned_cols=322 Identities=14% Similarity=0.153 Sum_probs=221.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCch---hHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPI---NEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~---~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
.|.+-..|..+|..++..++..+..++...+...+ ..++..|+++.++.++-.++ .++-..|...+..|+.. +..
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrialf-paa 161 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIALF-PAA 161 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhc-HHH
Confidence 45666677788889999999999888765432222 34568999999999999888 89999999999999985 777
Q ss_pred hHHHHhCCchHHH--HHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHh
Q 015687 150 TRVVIDHGAVPIF--VRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (402)
Q Consensus 150 ~~~~~~~g~i~~L--~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l 227 (402)
...+.+......+ ..+--..+.-.|-..+..+..+..-+|.....+...|.+..|..-+....|.-++.++......|
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 7777777666543 33334456777888888888898888888888999999999999995567888999999999999
Q ss_pred hhCCCCCchhhhhchHHHHHHhccC--CChhHHHHHHHHHHHhccCChH---HHHHHHHh--CcHHHHHHhcCCCChhhH
Q 015687 228 CRGKPQPLFEQTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTND---KIQAVIEA--GVCPRLVELLRHPSPSVL 300 (402)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~l~~l~~~~~~---~~~~~~~~--~~i~~L~~~L~~~~~~v~ 300 (402)
........+..-.++++.+..++.. ++|.-.-.++...+.+.....- .-+.+++. -.++...+.+...+++.+
T Consensus 242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai 321 (524)
T KOG4413|consen 242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI 321 (524)
T ss_pred HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence 9877666666668888888888854 3444333344444333321110 00112221 134445566677889999
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhCCC--hHHHHHHhcCCCchhHHHHHHHHHHHHhcC---CHHHHH---------HH-H
Q 015687 301 IPALRTVGNIVTGDDMQTQCIINHQA--LPCLLDLLTQNYKKSIKKEACWTISNITAG---NVNQIQ---------AI-I 365 (402)
Q Consensus 301 ~~a~~~l~nl~~~~~~~~~~i~~~~~--l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~---~~~~~~---------~l-~ 365 (402)
..|+.++|.+.+... ..+.+...|- ..+++.-.-+.....-+..+..+|.+|+.. .++++. .+ .
T Consensus 322 eaAiDalGilGSnte-GadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclif 400 (524)
T KOG4413|consen 322 EAAIDALGILGSNTE-GADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIF 400 (524)
T ss_pred HHHHHHHHhccCCcc-hhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHH
Confidence 999999999987544 4555555432 333333222221334456778899988862 333321 11 1
Q ss_pred Hc-------CCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 366 EA-------GIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 366 ~~-------~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
++ .-+.....+++.+.++++..|..++..++.
T Consensus 401 daaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 401 DAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred HHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence 11 235566777787889999999999988875
No 72
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=1.3e-05 Score=68.84 Aligned_cols=272 Identities=14% Similarity=0.202 Sum_probs=176.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHh--hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI--QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~--~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
+..++..+.+.+|.++..|+..+..+... +.+.+. +.-.++.+.+++...+ + -..|+.++.|++.. ...+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq~-~~l~ 76 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQK-EELR 76 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHhh-HHHH
Confidence 46788999999999999999888887542 333332 2346788899998877 4 67899999999985 7777
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhc-----CChHHHHHHhccch-h-hHHHHHHHHH
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN-----GALMPLLAQFNEHA-K-LSMLRNATWT 223 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~-----g~i~~L~~~l~~~~-~-~~~~~~a~~~ 223 (402)
..+++. .+..++..+.++...+.+..+.+|.|++.+...+....... .++..++..+.+.. + ..-..+.+.+
T Consensus 77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 777776 77778888888777788899999999999887665554332 13333443332322 2 2345677888
Q ss_pred HHHhhhCCCCCchhhhhchHH--HHHHhccCCChhHH-HHHHHHHHHhccCChHHHHHHHHh--CcHHHHH---------
Q 015687 224 LSNFCRGKPQPLFEQTRPALP--ALERLIHSNDDEVL-TDACWALSYLSDGTNDKIQAVIEA--GVCPRLV--------- 289 (402)
Q Consensus 224 L~~l~~~~~~~~~~~~~~~l~--~L~~lL~~~~~~v~-~~a~~~l~~l~~~~~~~~~~~~~~--~~i~~L~--------- 289 (402)
++|+++....+........+| .+..+-. .+..++ ...+.+|.|+|...... ..+++. .+++.++
T Consensus 156 f~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h-~~lL~e~~~lLp~iLlPlagpee~ 233 (353)
T KOG2973|consen 156 FANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLH-EVLLDESINLLPAILLPLAGPEEL 233 (353)
T ss_pred HHHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhH-HHHhcchHHHHHHHHhhcCCcccc
Confidence 899988764444333333222 3333333 455554 45667888877544322 222221 1222111
Q ss_pred ------------HhcC-----CCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHH
Q 015687 290 ------------ELLR-----HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352 (402)
Q Consensus 290 ------------~~L~-----~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~n 352 (402)
++|- .+++.++..-+.+|--+|.. ...++.+.+.|+.|.+-.+=+...++++++.+-.+..-
T Consensus 234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~ 312 (353)
T KOG2973|consen 234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQM 312 (353)
T ss_pred CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 2231 34678999999999888874 44677788888888877777666566666655555554
Q ss_pred HhcC
Q 015687 353 ITAG 356 (402)
Q Consensus 353 l~~~ 356 (402)
+..+
T Consensus 313 Lv~~ 316 (353)
T KOG2973|consen 313 LVRL 316 (353)
T ss_pred HHhc
Confidence 4444
No 73
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.4e-05 Score=79.03 Aligned_cols=286 Identities=15% Similarity=0.204 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHHhccCCCCchhHH-----hhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchH
Q 015687 86 NIQLDATTQFRKLLSIERSPPINEV-----IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVP 160 (402)
Q Consensus 86 ~~~~~a~~~l~~l~s~~~~~~~~~~-----~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 160 (402)
+-...++.+|+++++.. |....+ .--|.++.+..++....++.++..|+.++..+.. +.++...+.+.|.+.
T Consensus 1740 ~~v~m~LtAL~Nli~~n--PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~ 1816 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSAN--PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLT 1816 (2235)
T ss_pred HHHHHHHHHHHHHHhhC--cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHH
Confidence 34566899999998854 433222 2346788888888766558999999999976665 588889999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC---CCCchh
Q 015687 161 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK---PQPLFE 237 (402)
Q Consensus 161 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~ 237 (402)
.|+.+|.+ -+..|+.++.+|..|+.... ......+.|++..+..++....+++.+..++..+..+..++ |...+.
T Consensus 1817 ~LL~lLHS-~PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~IT 1894 (2235)
T KOG1789|consen 1817 TLLTLLHS-QPSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTIT 1894 (2235)
T ss_pred HHHHHHhc-ChHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeee
Confidence 99999986 46789999999999987765 55777889999999999888888999999999999998776 222221
Q ss_pred hhh-----------chHHHHHHhccC--CChhH------HHHHHHHHHHhc-----------------------------
Q 015687 238 QTR-----------PALPALERLIHS--NDDEV------LTDACWALSYLS----------------------------- 269 (402)
Q Consensus 238 ~~~-----------~~l~~L~~lL~~--~~~~v------~~~a~~~l~~l~----------------------------- 269 (402)
.+. ..-+..++++.. ++|++ +...-..+..+.
T Consensus 1895 L~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~ 1974 (2235)
T KOG1789|consen 1895 LIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADK 1974 (2235)
T ss_pred hHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhcc
Confidence 111 111233444422 12221 111111111111
Q ss_pred -----------------------------------------------------------cCChHHHHHHHHhCcHHHHHH
Q 015687 270 -----------------------------------------------------------DGTNDKIQAVIEAGVCPRLVE 290 (402)
Q Consensus 270 -----------------------------------------------------------~~~~~~~~~~~~~~~i~~L~~ 290 (402)
...+...+.+-..|.+|+++.
T Consensus 1975 E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~ 2054 (2235)
T KOG1789|consen 1975 ECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCT 2054 (2235)
T ss_pred CcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHH
Confidence 011111111122366666666
Q ss_pred hcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCC
Q 015687 291 LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGI 369 (402)
Q Consensus 291 ~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~ 369 (402)
.+.+.+..+-..|++.|..++.+. -..+.+.....+..+++.+... +....-|+-+|-.+.. ...+-+...++.|+
T Consensus 2055 Am~~~n~s~P~SaiRVlH~Lsen~-~C~~AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gL 2131 (2235)
T KOG1789|consen 2055 AMCLQNTSAPRSAIRVLHELSENQ-FCCDAMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGL 2131 (2235)
T ss_pred HHHhcCCcCcHHHHHHHHHHhhcc-HHHHHHhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCc
Confidence 666666666688889998888743 3556666666666778777654 4555677888887775 45566677788999
Q ss_pred HHHHHHHhcc
Q 015687 370 IGPLVNLLLN 379 (402)
Q Consensus 370 i~~L~~ll~~ 379 (402)
+|.|+.+|+.
T Consensus 2132 vpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2132 VPYLLQLLDS 2141 (2235)
T ss_pred HHHHHHHhcc
Confidence 9999999975
No 74
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.64 E-value=1.1e-05 Score=74.10 Aligned_cols=188 Identities=30% Similarity=0.365 Sum_probs=144.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
.++.+++.+.+.++..+..+...+..+-... .++.+..++.+.+ +.++..|+.+|+.+-..
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~------------av~~l~~~l~d~~-~~vr~~a~~aLg~~~~~------ 104 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGSEE------------AVPLLRELLSDED-PRVRDAAADALGELGDP------ 104 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhchHH------------HHHHHHHHhcCCC-HHHHHHHHHHHHccCCh------
Confidence 6788899999999999999999877664322 5899999999998 89999999988877652
Q ss_pred HHHhCCchHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchh-----------hHHHHH
Q 015687 152 VVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAK-----------LSMLRN 219 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~-----------~~~~~~ 219 (402)
..++.|+.++. +++..+|..+.++|+.+-... .+.+++..+..... ..++..
T Consensus 105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~ 168 (335)
T COG1413 105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAA 168 (335)
T ss_pred -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence 46889999888 699999999999999884221 36677777733221 123444
Q ss_pred HHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhh
Q 015687 220 ATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299 (402)
Q Consensus 220 a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v 299 (402)
+...+..+-. ...++.+...+.+.+..++..+..++..+.... ..+.+.+...+.+++..+
T Consensus 169 a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~v 229 (335)
T COG1413 169 AAEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEV 229 (335)
T ss_pred HHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHH
Confidence 4444443332 356778888998888999999999999887654 234578888899999999
Q ss_pred HHHHHHHHHHhhcC
Q 015687 300 LIPALRTVGNIVTG 313 (402)
Q Consensus 300 ~~~a~~~l~nl~~~ 313 (402)
+..++..++.+-..
T Consensus 230 r~~~~~~l~~~~~~ 243 (335)
T COG1413 230 RKAALLALGEIGDE 243 (335)
T ss_pred HHHHHHHhcccCcc
Confidence 99999999988654
No 75
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.62 E-value=9.3e-08 Score=57.69 Aligned_cols=41 Identities=46% Similarity=0.690 Sum_probs=38.5
Q ss_pred CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 357 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 357 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
++++++.+++.|++|.|+.+|.+++++++++|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 47889999999999999999999999999999999999974
No 76
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=5.4e-06 Score=76.62 Aligned_cols=318 Identities=11% Similarity=0.065 Sum_probs=203.3
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
.+++++..+...|..++..|+..+.+++...+...... -..+...+.++..+++ ..++. ++..+-.+..+-.....
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~--Fn~iFdvL~klsaDsd-~~V~~-~aeLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVY--FNEIFDVLCKLSADSD-QNVRG-GAELLDRLIKDIVTESA 160 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccc--hHHHHHHHHHHhcCCc-ccccc-HHHHHHHHHHHhccccc
Confidence 47888999999999999999999998865442222222 2235677788877766 45443 33433333221111111
Q ss_pred -HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHH-hcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 152 -VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL-SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 152 -~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~-~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
.+-=.+.||.|-.-+...++..|...+.-|..+-.-++ .+.+- -..+++-|.+.| .+++.+++..+-.+++++..
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~--~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL~ 237 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD--LEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFLA 237 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc--HHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHH
Confidence 22222566666666667788888887777766643322 23321 122566677777 67777888777777776665
Q ss_pred CC-CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChh-hHHHHHHHH
Q 015687 230 GK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS-VLIPALRTV 307 (402)
Q Consensus 230 ~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~-v~~~a~~~l 307 (402)
.- ..+........++.++.-++++++.++.-|+.-+..+..-.... -...-+|++..+++++.+..+. +...+...-
T Consensus 238 eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n 316 (675)
T KOG0212|consen 238 EIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQMVN 316 (675)
T ss_pred HHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHHHHHHHH
Confidence 43 33333355678899999999999999988876666665433322 2244568888888988777653 444433222
Q ss_pred ---HHhhcCChHHHHHHHhC-CChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHH
Q 015687 308 ---GNIVTGDDMQTQCIINH-QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE 383 (402)
Q Consensus 308 ---~nl~~~~~~~~~~i~~~-~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 383 (402)
..++.. +...+. ++. .+++.+.+.+.++ ..+.|-.+..-+..+-...|.++-.. ...+++.|+.-|.+.+.+
T Consensus 317 ~~l~~l~s~-~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql~~h-~~~if~tLL~tLsd~sd~ 392 (675)
T KOG0212|consen 317 GLLLKLVSS-ERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQLLVH-NDSIFLTLLKTLSDRSDE 392 (675)
T ss_pred HHHHHHHhh-hhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchhhhh-ccHHHHHHHHhhcCchhH
Confidence 222221 111111 333 4577888899888 88888888866666665555543322 355899999999999999
Q ss_pred HHHHHHHHHHHhhcCCCC
Q 015687 384 IKKEAAWAISNATSGGSS 401 (402)
Q Consensus 384 v~~~a~~aL~nl~~~~~~ 401 (402)
|...++..+.+++....+
T Consensus 393 vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 393 VVLLALSLLASICSSSNS 410 (675)
T ss_pred HHHHHHHHHHHHhcCccc
Confidence 999999999999987654
No 77
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=3.7e-05 Score=72.33 Aligned_cols=234 Identities=15% Similarity=0.138 Sum_probs=165.7
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHH
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (402)
++..|..-+..+. +.+|.....||.-+......... .-..+.+.+++..+...-+..+.+.++.+..+... ..
T Consensus 97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~ 169 (569)
T KOG1242|consen 97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ES 169 (569)
T ss_pred HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hh
Confidence 4777888888887 89999999999876653222111 12467788888888888899999999999877653 56
Q ss_pred HHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCCh-
Q 015687 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN- 273 (402)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~- 273 (402)
+.+.+++..+-..+....+..-++.+..++-..+..-......++...+|.++..+.+..++++..+..+...+...-+
T Consensus 170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~ 249 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA 249 (569)
T ss_pred hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence 6677888899888844333333334555555455444444455667788888888888889998888777655543222
Q ss_pred HHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHH
Q 015687 274 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353 (402)
Q Consensus 274 ~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl 353 (402)
.... -+++.++.-+....|.....++..+|.++.+.+.+....+ ..++|.+.+.|.+. .+++|+.+..++..+
T Consensus 250 ~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT-~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 250 YAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDT-KPEVRKAGIETLLKF 322 (569)
T ss_pred chhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 1112 1345555555445788889999999999988887666444 48999999999999 999999999999999
Q ss_pred hc--CCHHHHHH
Q 015687 354 TA--GNVNQIQA 363 (402)
Q Consensus 354 ~~--~~~~~~~~ 363 (402)
+. .+++ ++.
T Consensus 323 ~svidN~d-I~~ 333 (569)
T KOG1242|consen 323 GSVIDNPD-IQK 333 (569)
T ss_pred HHhhccHH-HHH
Confidence 87 3444 444
No 78
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=2.7e-05 Score=75.06 Aligned_cols=101 Identities=17% Similarity=0.174 Sum_probs=53.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHH
Q 015687 75 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 154 (402)
Q Consensus 75 ~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 154 (402)
.+.+.|++.+..++-.|+.++.++.+.+ -+. .+.|...++|++.+ +-++..|+.|...+....|+..+.
T Consensus 111 slknDL~s~nq~vVglAL~alg~i~s~E---mar-----dlapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~-- 179 (866)
T KOG1062|consen 111 SLKNDLNSSNQYVVGLALCALGNICSPE---MAR-----DLAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEH-- 179 (866)
T ss_pred HHHhhccCCCeeehHHHHHHhhccCCHH---HhH-----HhhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHH--
Confidence 3344555566666666666666665422 111 13556666666666 677777777776666655554433
Q ss_pred hCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc
Q 015687 155 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 189 (402)
Q Consensus 155 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~ 189 (402)
.++....+|.+.+..|.-.++..+..+|..++
T Consensus 180 ---f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~ 211 (866)
T KOG1062|consen 180 ---FVIAFRKLLCEKHHGVLIAGLHLITELCKISP 211 (866)
T ss_pred ---hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH
Confidence 23344445544444444444444445554443
No 79
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.58 E-value=8e-06 Score=77.85 Aligned_cols=261 Identities=16% Similarity=0.185 Sum_probs=166.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCC-CCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCC--Ccch
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIER-SPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT--SENT 150 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~--~~~~ 150 (402)
..++..|++..+.++..|+..+..++-.-+ ...-+.+-..|++ |.+.|.... +++.-..+.++..|...- ....
T Consensus 802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeey-pEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEY-PEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCccc-HHHHHHHHHHHHHHHHhccccccC
Confidence 344567788889999999888777643211 1122334455543 778887766 888766666666555421 1111
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
..+ .|++|.|..+|++....+++.++..++.||..++++...---..+--.|+.+| ...+.++++++..++..++..
T Consensus 879 pPi--~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelL-kahkK~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 879 PPI--KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELL-KAHKKEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred CCh--hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHh
Confidence 111 37899999999999999999999999999988776422110011233466777 666788999999999999876
Q ss_pred CCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 015687 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (402)
Q Consensus 231 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl 310 (402)
-. -..++..|+.-|+..+...+....-+++-.+...... .++|.|+.-...++..|+.-.+++++.+
T Consensus 956 IG------PqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF-------tVLPalmneYrtPe~nVQnGVLkalsf~ 1022 (1172)
T KOG0213|consen 956 IG------PQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF-------TVLPALMNEYRTPEANVQNGVLKALSFM 1022 (1172)
T ss_pred cC------HHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch-------hhhHHHHhhccCchhHHHHhHHHHHHHH
Confidence 31 1345556666665554444433333343333222211 2456666666677888888888888777
Q ss_pred hcCChHH-HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 015687 311 VTGDDMQ-TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (402)
Q Consensus 311 ~~~~~~~-~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 356 (402)
-....+. .+++ .-+.|.|-..|.+. ++.-|..|+.++.+++-+
T Consensus 1023 FeyigemskdYi--yav~PlleDAlmDr-D~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1023 FEYIGEMSKDYI--YAVTPLLEDALMDR-DLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred HHHHHHHhhhHH--HHhhHHHHHhhccc-cHHHHHHHHHHHHHHhcC
Confidence 6432211 1212 24677888888877 888888999888888764
No 80
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.58 E-value=4.8e-06 Score=77.70 Aligned_cols=264 Identities=16% Similarity=0.148 Sum_probs=167.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccC-CCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIE-RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
+..++..|++..+.++..|+.....+...- .....+.+...|. .|.+.|.... +++.-..+.++..|.+...--..
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~y-pEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDY-PEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCccc-HHHHHHHHHHHHHHhhhhccccc
Confidence 456677888999999999987766553211 0122333444443 3666776666 88887777777777653111101
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
.---.|++|.|..+|.+....+....+..++.+|..+|++...---..+--.|+..| .+.+.+++++|..++..+++.-
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~L-ks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSL-KSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH-HHhhHHHHHhhhhhhhhHHhhc
Confidence 111248999999999999999999999999999988876421110001233466677 6778899999999999998763
Q ss_pred CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 015687 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (402)
Q Consensus 232 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~ 311 (402)
. -..++..|+.-|+..+...+....-+++-.+...... .++|.|..=...++..++.-.+++++.+-
T Consensus 762 G------PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf-------sVlP~lm~dY~TPe~nVQnGvLkam~fmF 828 (975)
T COG5181 762 G------PQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF-------SVLPTLMSDYETPEANVQNGVLKAMCFMF 828 (975)
T ss_pred C------HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch-------hhHHHHHhcccCchhHHHHhHHHHHHHHH
Confidence 1 1455666766666555544444444444333222111 24566666566777788888888877665
Q ss_pred cCChH-HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 015687 312 TGDDM-QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (402)
Q Consensus 312 ~~~~~-~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 356 (402)
..... ..+++ .-+.|.|-..|.+. ++.-|..|..++..|+.+
T Consensus 829 eyig~~s~dYv--y~itPlleDAltDr-D~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 829 EYIGQASLDYV--YSITPLLEDALTDR-DPVHRQTAMNVIRHLVLN 871 (975)
T ss_pred HHHHHHHHHHH--HHhhHHHHhhhccc-chHHHHHHHHHHHHHhcC
Confidence 43221 11222 24567777788777 888888888888888764
No 81
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=2.2e-05 Score=75.58 Aligned_cols=276 Identities=16% Similarity=0.193 Sum_probs=194.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
.|.+.+.++..++.++..|+.++.++.... |..-+ .+++...++|.+.+ .-+...++..+..++..+++....
T Consensus 144 apeVe~Ll~~~~~~irKKA~Lca~r~irK~--P~l~e----~f~~~~~~lL~ek~-hGVL~~~l~l~~e~c~~~~~~l~~ 216 (866)
T KOG1062|consen 144 APEVERLLQHRDPYIRKKAALCAVRFIRKV--PDLVE----HFVIAFRKLLCEKH-HGVLIAGLHLITELCKISPDALSY 216 (866)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHcC--chHHH----HhhHHHHHHHhhcC-CceeeeHHHHHHHHHhcCHHHHHH
Confidence 577788899999999999999999987643 33322 25778888888887 788888899999999887777766
Q ss_pred HHhCCchHHHHHhhCC---------------CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccc---h--
Q 015687 153 VIDHGAVPIFVRLLSS---------------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH---A-- 212 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~---------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~---~-- 212 (402)
+.+ .++-|+..|+. ++|-++...++.|+-+-.+++...+.+-+ .|-+...+. .
T Consensus 217 fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~ 289 (866)
T KOG1062|consen 217 FRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNA 289 (866)
T ss_pred HHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccc
Confidence 665 56666665532 56888999999999888777765444432 233333111 1
Q ss_pred hhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc
Q 015687 213 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 292 (402)
Q Consensus 213 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L 292 (402)
-..+...+..++..+-.. . ....-++.+|-++|.+.|..+++-++..|......++...+.-. ..++++|
T Consensus 290 GnAILYE~V~TI~~I~~~---~--~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr-----~tIleCL 359 (866)
T KOG1062|consen 290 GNAILYECVRTIMDIRSN---S--GLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHR-----STILECL 359 (866)
T ss_pred hhHHHHHHHHHHHhccCC---c--hHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHH-----HHHHHHh
Confidence 234555555555544332 1 22235677889999999999999999999999877775544222 4688999
Q ss_pred CCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHH-------
Q 015687 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAI------- 364 (402)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l------- 364 (402)
++++..++..|+..+-.++-.+. ... ++..|+.+|.+. +++.|...+.-+..++. ..|+....+
T Consensus 360 ~DpD~SIkrralELs~~lvn~~N--v~~-----mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl 431 (866)
T KOG1062|consen 360 KDPDVSIKRRALELSYALVNESN--VRV-----MVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWHIDTMLKVL 431 (866)
T ss_pred cCCcHHHHHHHHHHHHHHhcccc--HHH-----HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 99999999999999988885443 332 345688999888 99999999999998886 344433221
Q ss_pred ------HHcCCHHHHHHHhccC
Q 015687 365 ------IEAGIIGPLVNLLLNA 380 (402)
Q Consensus 365 ------~~~~~i~~L~~ll~~~ 380 (402)
+..+++..++.++.++
T Consensus 432 ~~aG~~V~~dv~~nll~LIa~~ 453 (866)
T KOG1062|consen 432 KTAGDFVNDDVVNNLLRLIANA 453 (866)
T ss_pred HhcccccchhhHHHHHHHHhcC
Confidence 1233566777777655
No 82
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.54 E-value=2e-07 Score=56.17 Aligned_cols=41 Identities=27% Similarity=0.569 Sum_probs=37.7
Q ss_pred ChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 314 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 314 ~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
++++++.+++.|++|.|+++|.++ ++.++++|+|+|+||++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence 356888999999999999999988 99999999999999974
No 83
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=2.4e-06 Score=81.89 Aligned_cols=291 Identities=19% Similarity=0.212 Sum_probs=151.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
...+.+.++++++..+..++....++- ..+.+...+.|+++.|.+++.+++ +.+...|+.+|..|...++.....
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl~----~~~~~~~~~~gl~~~L~~ll~D~~-p~VVAnAlaaL~eI~e~~~~~~~~ 197 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKLF----DIDPDLVEDSGLVDALKDLLSDSN-PMVVANALAALSEIHESHPSVNLL 197 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHhh----cCChhhccccchhHHHHHHhcCCC-chHHHHHHHHHHHHHHhCCCCCcc
Confidence 467788888999999999999998884 455677889999999999999877 899999999999999865542222
Q ss_pred HHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC
Q 015687 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 232 (402)
.+....+..++..+..-+.- .-+..|.+++.+.|.-.... ..++..+...+ ++.+..+.-.+.-.+.++....+
T Consensus 198 ~l~~~~~~~lL~al~ec~EW---~qi~IL~~l~~y~p~d~~ea--~~i~~r~~p~L-qh~n~avvlsavKv~l~~~~~~~ 271 (734)
T KOG1061|consen 198 ELNPQLINKLLEALNECTEW---GQIFILDCLAEYVPKDSREA--EDICERLTPRL-QHANSAVVLSAVKVILQLVKYLK 271 (734)
T ss_pred cccHHHHHHHHHHHHHhhhh---hHHHHHHHHHhcCCCCchhH--HHHHHHhhhhh-ccCCcceEeehHHHHHHHHHHHH
Confidence 22222333333333322222 22333444443332110000 01222233333 33333333333333333322211
Q ss_pred CCchhhhhchHHHHHHhccCCChhHHHH------------------------------------HHHHHHHhccCChHHH
Q 015687 233 QPLFEQTRPALPALERLIHSNDDEVLTD------------------------------------ACWALSYLSDGTNDKI 276 (402)
Q Consensus 233 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~------------------------------------a~~~l~~l~~~~~~~~ 276 (402)
..........-|.++.++.+.. ++..- =+.++..++... .+
T Consensus 272 ~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~--nl 348 (734)
T KOG1061|consen 272 QVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDA--NL 348 (734)
T ss_pred HHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHh--HH
Confidence 1111111222233333332222 22222 223333332111 11
Q ss_pred HHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 015687 277 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (402)
Q Consensus 277 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 356 (402)
+ .++..+..+-..-+......+++++|+++..-++. .+.++.|+.++... ...+..+++-++..+...
T Consensus 349 ~-----qvl~El~eYatevD~~fvrkaIraig~~aik~e~~------~~cv~~lLell~~~-~~yvvqE~~vvi~dilRk 416 (734)
T KOG1061|consen 349 A-----QVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS------NDCVSILLELLETK-VDYVVQEAIVVIRDILRK 416 (734)
T ss_pred H-----HHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh------hhhHHHHHHHHhhc-ccceeeehhHHHHhhhhc
Confidence 1 12334444445557788899999999998754422 46777777777766 555666666666666654
Q ss_pred CHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHH
Q 015687 357 NVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISN 394 (402)
Q Consensus 357 ~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~n 394 (402)
.|..... +++.+...+.+ ++++.|..-.|.++.
T Consensus 417 yP~~~~~-----vv~~l~~~~~sl~epeak~amiWilg~ 450 (734)
T KOG1061|consen 417 YPNKYES-----VVAILCENLDSLQEPEAKAALIWILGE 450 (734)
T ss_pred CCCchhh-----hhhhhcccccccCChHHHHHHHHHHhh
Confidence 3333222 22333333333 455555555555543
No 84
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=4.9e-05 Score=72.43 Aligned_cols=256 Identities=15% Similarity=0.150 Sum_probs=172.7
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHH
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (402)
+-+-++.+|+++. +-++..|+.++..+....|+... ..+|.|..-|.++|+.|+..|+.+++.||.-+|..--
T Consensus 145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL- 217 (877)
T KOG1059|consen 145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL- 217 (877)
T ss_pred HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc-
Confidence 3456677788777 78888888888887765454332 3688899999999999999999999999988775311
Q ss_pred HHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCC-hhHHHHHHHHHH--HhccC
Q 015687 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND-DEVLTDACWALS--YLSDG 271 (402)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~~l~--~l~~~ 271 (402)
..-|.+..++-.+.+.=+.-.....+.+|+--.| .....++|.|..++++.. ..+...++.++. +++.+
T Consensus 218 ----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP----RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 218 ----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP----RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred ----cccHHHHHHHhccCCCeehHHHHHHHhhccccCc----hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 1345566666455555455556666666664433 233577888888887654 445666665553 34444
Q ss_pred ChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 015687 272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (402)
Q Consensus 272 ~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 351 (402)
.++... .+ .-+++.|-.++.+.++.++.-++.+++.+....+...+.. -+.+++.|.+. ++.+|-.|.-.|-
T Consensus 290 ~~d~~a-si-qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~Dk-D~SIRlrALdLl~ 361 (877)
T KOG1059|consen 290 MSDHSA-SI-QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDK-DESIRLRALDLLY 361 (877)
T ss_pred CCCcHH-HH-HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccC-CchhHHHHHHHHH
Confidence 222111 11 1247888888999999999999999999998777555533 35788999998 9999999999888
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHhc-cCCHHHHHHHHHHHHHhhcCCC
Q 015687 352 NITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 352 nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~nl~~~~~ 400 (402)
-+.. .+++..++ ..|+.-+. .+....|.+-+.-+..+++..+
T Consensus 362 gmVs--kkNl~eIV-----k~LM~~~~~ae~t~yrdell~~II~iCS~sn 404 (877)
T KOG1059|consen 362 GMVS--KKNLMEIV-----KTLMKHVEKAEGTNYRDELLTRIISICSQSN 404 (877)
T ss_pred HHhh--hhhHHHHH-----HHHHHHHHhccchhHHHHHHHHHHHHhhhhh
Confidence 7765 34444443 33444433 3344777777777776666543
No 85
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.49 E-value=1.4e-05 Score=73.34 Aligned_cols=313 Identities=17% Similarity=0.177 Sum_probs=193.2
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCC-CCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
+.+...+-+++.+++-.+.+.+|.++.. ....+.+.+.++--.++.-|..+ .+..-+.+|+..+..+..... ..+
T Consensus 28 ~~i~~~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~- 103 (371)
T PF14664_consen 28 ERIQCMLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPK- 103 (371)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Ccc-
Confidence 4444445556688998999999999874 46677788877655666666543 235678899999988877522 222
Q ss_pred HHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC
Q 015687 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 232 (402)
.+..|++..++.+.+++++..+..|+.+|+.++-.+| +.+...|++..+++.+.. +..++...++.++..+...+.
T Consensus 104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALID-GSFSISESLLDTLLYLLDSPR 179 (371)
T ss_pred cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhCCcc
Confidence 2345889999999999999999999999999998887 478899999999999955 444488889999999988754
Q ss_pred CCchhhh----hchHHHHHHhc---cCCCh--hHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhcCCCChhhHHH
Q 015687 233 QPLFEQT----RPALPALERLI---HSNDD--EVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRHPSPSVLIP 302 (402)
Q Consensus 233 ~~~~~~~----~~~l~~L~~lL---~~~~~--~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~~L~~~~~~v~~~ 302 (402)
.+..... ..++..+...- ..++. +....+..++..+...=+.......+. ..+..|+..|..+++.++..
T Consensus 180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 3332222 22222222220 11222 345555556655543222221111111 46788999999999999999
Q ss_pred HHHHHHHhhcCChH-HHHHH------HhCCChHHHHHHh---cCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHH
Q 015687 303 ALRTVGNIVTGDDM-QTQCI------INHQALPCLLDLL---TQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIG 371 (402)
Q Consensus 303 a~~~l~nl~~~~~~-~~~~i------~~~~~l~~L~~ll---~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~ 371 (402)
.+..+-.+..-... ..... ...|-...-.++- ... ....... ..-=.|+..+ ..--...++++|+++
T Consensus 260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~-~~~~~~~-~~~~~~l~~~y~aLll~ili~~gL~~ 337 (371)
T PF14664_consen 260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEA-KSILPHR-SSKRPNLVNHYLALLLAILIEAGLLE 337 (371)
T ss_pred HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhccccccc-ccccCcc-ccccccHHHHHHHHHHHHHHHcChHH
Confidence 99888888753321 11111 1111110000110 000 0000000 0001122221 111234556899999
Q ss_pred HHHHHhccC-CHHHHHHHHHHHHHhh
Q 015687 372 PLVNLLLNA-EFEIKKEAAWAISNAT 396 (402)
Q Consensus 372 ~L~~ll~~~-~~~v~~~a~~aL~nl~ 396 (402)
.|+++..+. +..+...|...|+.+.
T Consensus 338 ~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 338 ALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 999999886 8889999998888764
No 86
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.48 E-value=3.5e-07 Score=59.34 Aligned_cols=55 Identities=22% Similarity=0.557 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 340 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 340 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
+.+|..|+|+|++++...++........ +++.|+.+|.+++++||..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~-~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPE-LLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHH-HHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999988888887775554 999999999999999999999999976
No 87
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.48 E-value=2.1e-05 Score=67.86 Aligned_cols=236 Identities=16% Similarity=0.140 Sum_probs=155.5
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHH-hcCChHHHHHHhccc-hhhHHHHHHHHHHHHhhhCCC-CCchh
Q 015687 161 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL-SNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKP-QPLFE 237 (402)
Q Consensus 161 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~-~~g~i~~L~~~l~~~-~~~~~~~~a~~~L~~l~~~~~-~~~~~ 237 (402)
.|-.+++.-++-.+-.|+.++.++....+ .|+... +...-..++.++..+ .+.+++.+...+++.++..+. .....
T Consensus 153 yLgkl~Q~i~~lTrlfav~cl~~l~~~~e-~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~ 231 (432)
T COG5231 153 YLGKLSQLIDFLTRLFAVSCLSNLEFDVE-KRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDID 231 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHH
Confidence 33344444456678889999999987765 455544 333556677777443 468889999999998887642 12223
Q ss_pred hhhchHHHHHHhccCC-ChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhcCC---CChhhHHHHHHHHHHhhc
Q 015687 238 QTRPALPALERLIHSN-DDEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLRH---PSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 238 ~~~~~l~~L~~lL~~~-~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~~L~~---~~~~v~~~a~~~l~nl~~ 312 (402)
.....+.-++.+.+.. ...|..-+|.++.|+++. +.+.+..+.-.|-+.+.++.|.. .+++++...-++=..+..
T Consensus 232 K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~ 311 (432)
T COG5231 232 KMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQ 311 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHh
Confidence 3345555666666543 577888999999999974 33445544444544555555532 233333222222222211
Q ss_pred C---------------------Ch---------HHHHHHHh--CCChHHHHHHhcCCCchh-HHHHHHHHHHHHhcCCHH
Q 015687 313 G---------------------DD---------MQTQCIIN--HQALPCLLDLLTQNYKKS-IKKEACWTISNITAGNVN 359 (402)
Q Consensus 313 ~---------------------~~---------~~~~~i~~--~~~l~~L~~ll~~~~~~~-v~~~a~~~L~nl~~~~~~ 359 (402)
. ++ .+.+.+.+ ..++..|.+++++. .+. .-.-||.-+..+....|+
T Consensus 312 ~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n-~~nt~i~vAc~Di~~~Vr~~PE 390 (432)
T COG5231 312 NTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSN-NPNTWICVACSDIFQLVRASPE 390 (432)
T ss_pred hhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcC-CCCceEeeeHhhHHHHHHhCch
Confidence 1 11 12333333 25688899999888 554 566788888888888899
Q ss_pred HHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 360 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
.+..+...|+-..++++++++|++|+-+|+.|+..+.+.
T Consensus 391 ~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 391 INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence 888888999999999999999999999999999888753
No 88
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.46 E-value=5.6e-05 Score=71.51 Aligned_cols=259 Identities=15% Similarity=0.125 Sum_probs=173.4
Q ss_pred CchhHHhhcCcHHHHHHhh---------cCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCC-----C
Q 015687 105 PPINEVIQSGVVPRFIEFL---------SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP-----T 170 (402)
Q Consensus 105 ~~~~~~~~~g~i~~L~~lL---------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-----~ 170 (402)
...+.+.....+..|.++- ....++.+..+|+.||+|+...++..++.+++.|..+.++..|+.. +
T Consensus 13 ~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~ 92 (446)
T PF10165_consen 13 TGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQP 92 (446)
T ss_pred ccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCC
Confidence 3445555555566666665 2333489999999999999999999999999999999999999875 7
Q ss_pred HHHHHHHHHHHHHhhCCCchhhHHHHhc-CChHHHHHHhcc---------c-------hhhHHHHHHHHHHHHhhhCCCC
Q 015687 171 DDVREQAVWALGNVAGDSPKCRDLVLSN-GALMPLLAQFNE---------H-------AKLSMLRNATWTLSNFCRGKPQ 233 (402)
Q Consensus 171 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~-g~i~~L~~~l~~---------~-------~~~~~~~~a~~~L~~l~~~~~~ 233 (402)
.++.-...+.|--++...+..+..+++. +++..++..+.. . .+......++.++.|+..+.+.
T Consensus 93 ~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~ 172 (446)
T PF10165_consen 93 SDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPK 172 (446)
T ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCc
Confidence 7888888888887777777777666554 677777766521 0 2455677788888899877644
Q ss_pred Cch----hhhhchHHHHHHhc---cC--CChhHHHHHHHHHHHhccCChHH-----------HHHHHHhCcHHHHHHhcC
Q 015687 234 PLF----EQTRPALPALERLI---HS--NDDEVLTDACWALSYLSDGTNDK-----------IQAVIEAGVCPRLVELLR 293 (402)
Q Consensus 234 ~~~----~~~~~~l~~L~~lL---~~--~~~~v~~~a~~~l~~l~~~~~~~-----------~~~~~~~~~i~~L~~~L~ 293 (402)
... .....++..+..++ .. +.......++.+|.++--..... ........++..|+.+|.
T Consensus 173 ~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld 252 (446)
T PF10165_consen 173 SVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLD 252 (446)
T ss_pred ccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHH
Confidence 332 22344555555552 11 12456777777777773211111 000112235666777763
Q ss_pred C-----C---ChhhHHHHHHHHHHhhcCChHHHHHHHh----------------CCChHHHHHHhcCCCchhHHHHHHHH
Q 015687 294 H-----P---SPSVLIPALRTVGNIVTGDDMQTQCIIN----------------HQALPCLLDLLTQNYKKSIKKEACWT 349 (402)
Q Consensus 294 ~-----~---~~~v~~~a~~~l~nl~~~~~~~~~~i~~----------------~~~l~~L~~ll~~~~~~~v~~~a~~~ 349 (402)
. . -.....+.+.+|.+++......++.+.. ..+-..|++++.+. .+.+|..+.-.
T Consensus 253 ~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vael 331 (446)
T PF10165_consen 253 KRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAEL 331 (446)
T ss_pred HHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHHH
Confidence 1 1 2357788999999999877655544432 24566899999999 69999999999
Q ss_pred HHHHhcCCHHHHHHH
Q 015687 350 ISNITAGNVNQIQAI 364 (402)
Q Consensus 350 L~nl~~~~~~~~~~l 364 (402)
|..||..+....-..
T Consensus 332 lf~Lc~~d~~~~v~~ 346 (446)
T PF10165_consen 332 LFVLCKEDASRFVKY 346 (446)
T ss_pred HHHHHhhhHHHHHHH
Confidence 999987655544333
No 89
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.45 E-value=3.6e-05 Score=70.70 Aligned_cols=188 Identities=26% Similarity=0.368 Sum_probs=143.9
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhH
Q 015687 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193 (402)
Q Consensus 114 g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 193 (402)
..++.+.+++.+.+ ..++..|++.++.+... -+++.+..++.+.++.+|..++.+|+.+- .+.
T Consensus 43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~~--- 105 (335)
T COG1413 43 EAADELLKLLEDED-LLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELG--DPE--- 105 (335)
T ss_pred hhHHHHHHHHcCCC-HHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccC--Chh---
Confidence 35888999999987 89999999997776652 47999999999999999999999998872 221
Q ss_pred HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCCh------------hHHHHH
Q 015687 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD------------EVLTDA 261 (402)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~------------~v~~~a 261 (402)
.++.++..+..+.+..++..+.++|..+-.. ..+..++..+.+... .++..+
T Consensus 106 ------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 106 ------AVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 5788999995578999999999999887754 335566666665442 244444
Q ss_pred HHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchh
Q 015687 262 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS 341 (402)
Q Consensus 262 ~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~ 341 (402)
...++.+-. ...++.+...+.+....++..+..+++.+.... ..+.+.+...+.+. +..
T Consensus 170 ~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~ 228 (335)
T COG1413 170 AEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE 228 (335)
T ss_pred HHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence 444444332 234678888898888899999999999998765 24556788888887 888
Q ss_pred HHHHHHHHHHHHhc
Q 015687 342 IKKEACWTISNITA 355 (402)
Q Consensus 342 v~~~a~~~L~nl~~ 355 (402)
++..++..|+.+-.
T Consensus 229 vr~~~~~~l~~~~~ 242 (335)
T COG1413 229 VRKAALLALGEIGD 242 (335)
T ss_pred HHHHHHHHhcccCc
Confidence 99888888887754
No 90
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.43 E-value=5.5e-05 Score=74.19 Aligned_cols=247 Identities=14% Similarity=0.145 Sum_probs=164.9
Q ss_pred CHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHH
Q 015687 128 FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ 207 (402)
Q Consensus 128 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~ 207 (402)
+..++..|+-.|+.+..+-+..- ..+.-..++.-+++++.+++..|..|||+++.++-.. .+|.++..
T Consensus 832 ~~~ikvfa~LslGElgr~~~~s~----~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~--------yLpfil~q 899 (1233)
T KOG1824|consen 832 SDSIKVFALLSLGELGRRKDLSP----QNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPK--------YLPFILEQ 899 (1233)
T ss_pred chhHHHHHHhhhhhhccCCCCCc----chhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHh--------HHHHHHHH
Confidence 35778888888888776533221 2245567888899999999999999999998754321 46666666
Q ss_pred hccchhhHHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 015687 208 FNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 286 (402)
Q Consensus 208 l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~ 286 (402)
+...+. =+.-....|....... ..........+...|.+-..+..+..+.-...+|+.++..+++. .+|
T Consensus 900 i~sqpk--~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epes--------Llp 969 (1233)
T KOG1824|consen 900 IESQPK--RQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPES--------LLP 969 (1233)
T ss_pred HhcchH--hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHH--------HHH
Confidence 633221 1222222233322221 12112223344444444455556667888888999998776654 479
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015687 287 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 366 (402)
Q Consensus 287 ~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 366 (402)
+|-..+.++.+..+..++.++.-.....+.-.+.++. +.+..++.+++++ +.+||+.|..++...+.+.|..+..+..
T Consensus 970 kL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~~~~dp-Dl~VrrvaLvv~nSaahNKpslIrDllp 1047 (1233)
T KOG1824|consen 970 KLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLKLLRDP-DLEVRRVALVVLNSAAHNKPSLIRDLLP 1047 (1233)
T ss_pred HHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-HHHHHHHHHHhCC-chhHHHHHHHHHHHHHccCHhHHHHHHH
Confidence 9999999999999999988887777666554444443 5677888999999 9999999999999998888887776654
Q ss_pred cCCHHHHHHHh----------c--------cCCHHHHHHHHHHHHHhhcCC
Q 015687 367 AGIIGPLVNLL----------L--------NAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 367 ~~~i~~L~~ll----------~--------~~~~~v~~~a~~aL~nl~~~~ 399 (402)
. ++|.|+.-- + ++.-++|+.|..++..+...+
T Consensus 1048 e-LLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdsc 1097 (1233)
T KOG1824|consen 1048 E-LLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSC 1097 (1233)
T ss_pred H-HHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhh
Confidence 3 455444321 1 133578898888888776554
No 91
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=1.4e-05 Score=75.29 Aligned_cols=219 Identities=16% Similarity=0.155 Sum_probs=151.0
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHH---HHHHHhhhCC---
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT---WTLSNFCRGK--- 231 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~---~~L~~l~~~~--- 231 (402)
+..-|..+..+.+..++.+|+.+|..|... -...+. .....++++ .+.+..++..|. |.+.|.+-.+
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg-~kL~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEG-FKLSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhccc-ccccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 344477788888888888888888888652 222222 345667777 677788888774 5555555221
Q ss_pred CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcH--------------------------
Q 015687 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVC-------------------------- 285 (402)
Q Consensus 232 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i-------------------------- 285 (402)
..........++..+.+.+.+-+..|+..|..+|+.+..-+++.+++.++..++
T Consensus 272 e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk 351 (823)
T KOG2259|consen 272 ESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGK 351 (823)
T ss_pred hhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCc
Confidence 122223345677778888888888888888888887776555555554444333
Q ss_pred ------------------------HHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchh
Q 015687 286 ------------------------PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS 341 (402)
Q Consensus 286 ------------------------~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~ 341 (402)
..++.-|.++-.+||.+|...++.++...+.... ..+..|+.++++. ...
T Consensus 352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE-~~~ 425 (823)
T KOG2259|consen 352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDE-IEV 425 (823)
T ss_pred cccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccH-HHH
Confidence 3333334444456999999999999998875544 4567899999988 889
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 342 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 342 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
||..|.++|..|+.+ ..++...++.++..|.+.++++|.++-..|++.
T Consensus 426 VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 426 VRLKAIFALTMISVH------LAIREEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999999999999864 122333567777788888888888887777664
No 92
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=0.00013 Score=63.47 Aligned_cols=318 Identities=15% Similarity=0.147 Sum_probs=205.8
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHH--HHhhcCCCCHHHHHHHHHHHHHhhcCCCc
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF--IEFLSRDDFPQLQFEAAWALTNIASGTSE 148 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L--~~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 148 (402)
+-++.++..+..+|.++...|...+..+.-. +.....+.++.....+ .++-...+ +-.+......+..|.+-+++
T Consensus 128 eilklildcIggeddeVAkAAiesikrialf--paaleaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSiSpe 204 (524)
T KOG4413|consen 128 EILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISPE 204 (524)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCHH
Confidence 4578888889899999999999999888532 3445556666555443 23333333 46788888889999998899
Q ss_pred chHHHHhCCchHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccc-hhhHHHHHHHHHHHH
Q 015687 149 NTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSN 226 (402)
Q Consensus 149 ~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~-~~~~~~~~a~~~L~~ 226 (402)
.....-+.|.+..|..=|.. .+.-++..++.....++.-.. .|+.+.+.|.++.+.+++... .++--.-.++..+..
T Consensus 205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteH-greflaQeglIdlicnIIsGadsdPfekfralmgfgk 283 (524)
T KOG4413|consen 205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH-GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGK 283 (524)
T ss_pred HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh-hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHH
Confidence 99999999999999887775 677788888888888875544 577888899999999998432 222222223333333
Q ss_pred hhhCC---C-CC--chhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCc--HHHHHHhcCC-CCh
Q 015687 227 FCRGK---P-QP--LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV--CPRLVELLRH-PSP 297 (402)
Q Consensus 227 l~~~~---~-~~--~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~--i~~L~~~L~~-~~~ 297 (402)
+.... . .+ .......+++-..+++..+|++.+..+..+++.+...... .+.+...|- ...++.-..+ +..
T Consensus 284 ffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteG-adlllkTgppaaehllarafdqnah 362 (524)
T KOG4413|consen 284 FFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEG-ADLLLKTGPPAAEHLLARAFDQNAH 362 (524)
T ss_pred HhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcch-hHHHhccCChHHHHHHHHHhccccc
Confidence 33221 0 11 1111123444556677889999999999999998765543 355665553 3333333333 333
Q ss_pred hhHHHHHHHHHHhhcCC---hHH----------HHHHHh-------CCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCC
Q 015687 298 SVLIPALRTVGNIVTGD---DMQ----------TQCIIN-------HQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357 (402)
Q Consensus 298 ~v~~~a~~~l~nl~~~~---~~~----------~~~i~~-------~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~ 357 (402)
.-+..+++++.+++... +++ +..+.+ ..-+..+..+++.+ .|+++..+..++..|+..
T Consensus 363 akqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaaq- 440 (524)
T KOG4413|consen 363 AKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQ- 440 (524)
T ss_pred chHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcC-
Confidence 45677888888887532 111 111222 13355677788888 899999999999999875
Q ss_pred HHHHHHHH-HcCCHHHHHHHhccC---CHHHHHHHHHHHHHh
Q 015687 358 VNQIQAII-EAGIIGPLVNLLLNA---EFEIKKEAAWAISNA 395 (402)
Q Consensus 358 ~~~~~~l~-~~~~i~~L~~ll~~~---~~~v~~~a~~aL~nl 395 (402)
|=....+. ..|++..+.+.-... ..+.+.++|.+|.+-
T Consensus 441 PWalkeifakeefieiVtDastEhaKaakdAkYeccKAiaea 482 (524)
T KOG4413|consen 441 PWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIAEA 482 (524)
T ss_pred cHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHHHH
Confidence 33333444 466666666554332 235677777777664
No 93
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.41 E-value=7.4e-05 Score=69.41 Aligned_cols=209 Identities=19% Similarity=0.088 Sum_probs=152.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
+..++..+.+.++.++..++..|..+-. .+..+.|+.+|.+.+ +.++..++.+++....
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~------------~~a~~~L~~~L~~~~-p~vR~aal~al~~r~~-------- 146 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG------------RQAEPWLEPLLAASE-PPGRAIGLAALGAHRH-------- 146 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc------------hHHHHHHHHHhcCCC-hHHHHHHHHHHHhhcc--------
Confidence 7889999999999899999998877521 225788999998888 8999888877766221
Q ss_pred HHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC
Q 015687 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 232 (402)
...+.+..+|+++++.++..|+.+|+.+-.. ..++.|...+ .+.++.++..+++++..+-.
T Consensus 147 ----~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-----------~a~~~L~~al-~d~~~~VR~aA~~al~~lG~--- 207 (410)
T TIGR02270 147 ----DPGPALEAALTHEDALVRAAALRALGELPRR-----------LSESTLRLYL-RDSDPEVRFAALEAGLLAGS--- 207 (410)
T ss_pred ----ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-----------cchHHHHHHH-cCCCHHHHHHHHHHHHHcCC---
Confidence 3467899999999999999999999988532 2455566666 88999999999999966632
Q ss_pred CCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 015687 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 233 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
....+.+..+...........+..++... +.+ .+++.|..++.++. ++..++.++|.+-.
T Consensus 208 -------~~A~~~l~~~~~~~g~~~~~~l~~~lal~--~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~ 267 (410)
T TIGR02270 208 -------RLAWGVCRRFQVLEGGPHRQRLLVLLAVA--GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGD 267 (410)
T ss_pred -------HhHHHHHHHHHhccCccHHHHHHHHHHhC--Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCC
Confidence 13345555544444444443333333333 111 35688888887755 89999999997753
Q ss_pred CChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 313 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 313 ~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
+ ..++.|+..+... .++..|..++..|+.
T Consensus 268 --p---------~av~~L~~~l~d~---~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 268 --V---------EAAPWCLEAMREP---PWARLAGEAFSLITG 296 (410)
T ss_pred --c---------chHHHHHHHhcCc---HHHHHHHHHHHHhhC
Confidence 2 5678899998755 399999999999986
No 94
>PF05536 Neurochondrin: Neurochondrin
Probab=98.39 E-value=3.2e-05 Score=74.79 Aligned_cols=235 Identities=19% Similarity=0.161 Sum_probs=161.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCc--hhHHhhcCcHHHHHHhhcCCC------CHHHHHHHHHHHHHhh
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP--INEVIQSGVVPRFIEFLSRDD------FPQLQFEAAWALTNIA 143 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~--~~~~~~~g~i~~L~~lL~~~~------~~~~~~~a~~~L~~l~ 143 (402)
.+.+.+..|++.+.+.++.++..+.+++..++... .+.+.+.=+.+.+-.+|.+.. ....+..|+.+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 57889999999998899999999999987542212 234667666788888988722 2567888999999988
Q ss_pred cCCCcch--HHHHhCCchHHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHH
Q 015687 144 SGTSENT--RVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNA 220 (402)
Q Consensus 144 ~~~~~~~--~~~~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a 220 (402)
.. ++.. ..++ +-||.|+..+.+.+. ++...|+.+|..++. .+..+..+++.|.++.|...+.+ .+.....+
T Consensus 86 ~~-~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~A 159 (543)
T PF05536_consen 86 RD-PELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN--QSFQMEIA 159 (543)
T ss_pred CC-hhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh--CcchHHHH
Confidence 84 4433 3344 579999999987666 999999999999994 45568999999999999999844 55567778
Q ss_pred HHHHHHhhhCCCC----CchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHH-HHHHHHhC----cHHHHHHh
Q 015687 221 TWTLSNFCRGKPQ----PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK-IQAVIEAG----VCPRLVEL 291 (402)
Q Consensus 221 ~~~L~~l~~~~~~----~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~~----~i~~L~~~ 291 (402)
..++.+++..... ........+++.+...+........-..|..|..+....+.. ........ +..-+..+
T Consensus 160 l~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i 239 (543)
T PF05536_consen 160 LNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI 239 (543)
T ss_pred HHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence 8888887766431 112223455666666666666666777788888776544211 11111222 33334444
Q ss_pred cCC-CChhhHHHHHHHHHHhhc
Q 015687 292 LRH-PSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 292 L~~-~~~~v~~~a~~~l~nl~~ 312 (402)
|.+ ..+.-|.+++...+.+..
T Consensus 240 L~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 240 LQSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred HhcCCCHHHHHHHHHHHHHHHH
Confidence 543 345667777777666653
No 95
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.37 E-value=8.1e-06 Score=61.28 Aligned_cols=125 Identities=19% Similarity=0.195 Sum_probs=105.8
Q ss_pred hccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCc
Q 015687 70 LESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 148 (402)
Q Consensus 70 ~~~i~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 148 (402)
++-+..++...+. .+.+.+...+.-|.+++- ++-+...+.+.+++..+++.|..++ +.+...++..|+|+|.+ +.
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAY--DP~Nys~Lrql~vLdlFvdsl~e~n-e~LvefgIgglCNlC~d-~~ 90 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAY--DPINYSHLRQLDVLDLFVDSLEEQN-ELLVEFGIGGLCNLCLD-KT 90 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc--CcchHHHHHHhhHHHHHHHHhhccc-HHHHHHhHHHHHhhccC-hH
Confidence 4567778877764 678888888888888853 2445566788999999999999998 89999999999999986 88
Q ss_pred chHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhc
Q 015687 149 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN 198 (402)
Q Consensus 149 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~ 198 (402)
+...+.+.+++|..+..++++...+...++.++..++......|+.+...
T Consensus 91 n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p 140 (173)
T KOG4646|consen 91 NAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSP 140 (173)
T ss_pred HHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccH
Confidence 99999999999999999999999999999999999997776677777543
No 96
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.37 E-value=4.3e-06 Score=62.74 Aligned_cols=115 Identities=13% Similarity=0.091 Sum_probs=99.8
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhH
Q 015687 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193 (402)
Q Consensus 114 g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 193 (402)
+.+..|+.-.+...+.+-+.+..--|.|.+.+ |.+-..+.+..++..++.-|..++..+.+.++..|+|+|-+.. ...
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHH
Confidence 45667776666554488899999999999986 8888999999999999999999999999999999999998876 578
Q ss_pred HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
.+.++++++.++..+ .++...+...++.++..|+...
T Consensus 94 ~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 94 FIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE 130 (173)
T ss_pred HHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence 899999999999999 7777788888999999998775
No 97
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.36 E-value=3e-05 Score=66.95 Aligned_cols=230 Identities=14% Similarity=0.174 Sum_probs=153.8
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHH-hCCchHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhhHHHHh
Q 015687 121 EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI-DHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLS 197 (402)
Q Consensus 121 ~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 197 (402)
++++.-+ +-.+..|+.|+.++... ++.+...- +...-..++.+++. ...+++-..+.+++-+..++. +.+.+-+
T Consensus 156 kl~Q~i~-~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqdi~K 232 (432)
T COG5231 156 KLSQLID-FLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQDIDK 232 (432)
T ss_pred HHHHHHH-HHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHHHHH
Confidence 3444444 56788999999999986 66665544 34455667777765 567888899999998876654 3322221
Q ss_pred -cCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCch--hhhhchHHHHHHhcc---CCChhHHHHHHHHHHHhccC
Q 015687 198 -NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF--EQTRPALPALERLIH---SNDDEVLTDACWALSYLSDG 271 (402)
Q Consensus 198 -~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~l~~L~~lL~---~~~~~v~~~a~~~l~~l~~~ 271 (402)
...+.-++.+........+.+-++.++.|++...|.... ....+-+..-++.|. .+|++++.+.-.+=+.+-..
T Consensus 233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~ 312 (432)
T COG5231 233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQN 312 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence 235666777776677889999999999999985433222 122232223334442 34666655433322222110
Q ss_pred ---------------------C---------hHHHHHHHHh--CcHHHHHHhcCCCChh-hHHHHHHHHHHhhcCChHHH
Q 015687 272 ---------------------T---------NDKIQAVIEA--GVCPRLVELLRHPSPS-VLIPALRTVGNIVTGDDMQT 318 (402)
Q Consensus 272 ---------------------~---------~~~~~~~~~~--~~i~~L~~~L~~~~~~-v~~~a~~~l~nl~~~~~~~~ 318 (402)
+ ...++.+.+. .++..|.++++..++. ...-||.-|+.++...|+..
T Consensus 313 ~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~ 392 (432)
T COG5231 313 TKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEIN 392 (432)
T ss_pred hhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHH
Confidence 0 0122223333 4678888888877665 66678899999999999999
Q ss_pred HHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 015687 319 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354 (402)
Q Consensus 319 ~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 354 (402)
..+...|+-..++.+++++ +++||-+|..++.-+.
T Consensus 393 ~vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i 427 (432)
T COG5231 393 AVLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHH
Confidence 9888999999999999999 9999999999887654
No 98
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=7.3e-06 Score=75.36 Aligned_cols=201 Identities=13% Similarity=0.136 Sum_probs=146.6
Q ss_pred HHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHHHhccCC
Q 015687 175 EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN 253 (402)
Q Consensus 175 ~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~ 253 (402)
..++.+|..++..-...|.-+.+..+.+.|+++| +.++..+...+...++|+.-.. +-.......+++.++++++.+.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 3455566666666667788888888999999999 6677777777788888877665 3333444588999999999999
Q ss_pred ChhHHHHHHHHHHHhccCChHHHH-HHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChH---HHHHHHhC----C
Q 015687 254 DDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM---QTQCIINH----Q 325 (402)
Q Consensus 254 ~~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~---~~~~i~~~----~ 325 (402)
|..++....|.+..+..+.....+ .++..-++..++.+..+++..++..++..+.|+.+.+.. ..+..+.. -
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 999999999999998866543322 355566789999999999999999999999999985432 11111111 2
Q ss_pred ChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHh
Q 015687 326 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLL 377 (402)
Q Consensus 326 ~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll 377 (402)
+...|++.+... +|-.-.+.|+.|.++++.+..-...+++ ..++..+..+|
T Consensus 566 lfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 566 LFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred HHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 456777777777 7777778899999999865555555553 44555555554
No 99
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=1.8e-05 Score=73.20 Aligned_cols=275 Identities=17% Similarity=0.096 Sum_probs=171.0
Q ss_pred hhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 015687 111 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 190 (402)
Q Consensus 111 ~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 190 (402)
.-.++++..+..+.+++ ..+++.|+..+-|++..... .-...-..+...+.++..+++..++ .++..+-.+..+-..
T Consensus 81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv~k~-~v~~~Fn~iFdvL~klsaDsd~~V~-~~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKVAKG-EVLVYFNEIFDVLCKLSADSDQNVR-GGAELLDRLIKDIVT 157 (675)
T ss_pred HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHHhcc-CcccchHHHHHHHHHHhcCCccccc-cHHHHHHHHHHHhcc
Confidence 34567899999999988 89999999999999875222 1222223567788888887777776 444555555433221
Q ss_pred hhH-HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhc
Q 015687 191 CRD-LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (402)
Q Consensus 191 ~~~-~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~ 269 (402)
-++ .+.-.+++|-|-..+ ...++..+.....-+..|-..++-.-..+...+++.|..+|.++.++|+.-+=.+++.+.
T Consensus 158 e~~~tFsL~~~ipLL~eri-y~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL 236 (675)
T KOG0212|consen 158 ESASTFSLPEFIPLLRERI-YVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFL 236 (675)
T ss_pred ccccccCHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 111 221122333333334 345777777777666666555333334455888999999999999999876666665543
Q ss_pred c---CChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCch-hHHHH
Q 015687 270 D---GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK-SIKKE 345 (402)
Q Consensus 270 ~---~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~-~v~~~ 345 (402)
. .++.. +--...++.++..+.++++.++..|+.-|..++.-.+...- ..-.|++..++..+.+. .+ .++..
T Consensus 237 ~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l-~~~s~il~~iLpc~s~~-e~~~i~~~ 311 (675)
T KOG0212|consen 237 AEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLL-LYLSGILTAILPCLSDT-EEMSIKEY 311 (675)
T ss_pred HHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchh-hhhhhhhhhcccCCCCC-ccccHHHH
Confidence 1 12211 11124678899999999999999998888888875543322 23347777888888777 44 45554
Q ss_pred HHHHHHHHhc--CCHHHHHHHHHc-CCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 346 ACWTISNITA--GNVNQIQAIIEA-GIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 346 a~~~L~nl~~--~~~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
+..+-.-+.. +++...+. ++- .+++.|...+.++..+.|.+++.-+..+
T Consensus 312 a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l 363 (675)
T KOG0212|consen 312 AQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILL 363 (675)
T ss_pred HHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 4433222222 11111111 332 2577888888888888888887666554
No 100
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.25 E-value=2.1e-05 Score=67.96 Aligned_cols=187 Identities=16% Similarity=0.129 Sum_probs=118.6
Q ss_pred cCCCHHHHHHHHHHHHHHhccC-CCCchhHHhh--cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCC
Q 015687 81 WSDDRNIQLDATTQFRKLLSIE-RSPPINEVIQ--SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG 157 (402)
Q Consensus 81 ~s~~~~~~~~a~~~l~~l~s~~-~~~~~~~~~~--~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g 157 (402)
.+.|.+.+..|+..|+.++.+. .......+.. ..++..+...+.+.. ..+...|+.++..++...........+ .
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~~-~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYAD-I 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-H
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHHH-H
Confidence 4678999999999999998764 1122222221 145567777777666 688899999999988754444444443 5
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC--CCc
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP--QPL 235 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~--~~~ 235 (402)
++|.|+..+.++...+++.|..+|..++...+.. ..+ .++.+...+ .+.++.++..++..+..+....+ ...
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~-~~~----~~~~l~~~~-~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYS-PKI----LLEILSQGL-KSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H---HH----HHHHHHHHT-T-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH-HHH----HHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 7899999999999999999999999999876511 111 123333344 78899999999999888877654 122
Q ss_pred hh---hhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHH
Q 015687 236 FE---QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK 275 (402)
Q Consensus 236 ~~---~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~ 275 (402)
.. ....+.+.+..++.+.+++|+..+-.++..+....++.
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 11 23568889999999999999999988888876544433
No 101
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.25 E-value=4e-06 Score=60.36 Aligned_cols=87 Identities=28% Similarity=0.443 Sum_probs=69.9
Q ss_pred HHHHHHhh-cCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHH
Q 015687 116 VPRFIEFL-SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (402)
Q Consensus 116 i~~L~~lL-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (402)
|+.|++.| ++++ +.++..++++|+.+.. + .+++.|+.+++++++.++..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 57899999 5555 9999999999995432 1 46999999999999999999999999882
Q ss_pred HHhcCChHHHHHHhccchhhHHHHHHHHHHH
Q 015687 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLS 225 (402)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~ 225 (402)
....++.|..++.++.+..++..++++|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12378899999966667777888888874
No 102
>PF05536 Neurochondrin: Neurochondrin
Probab=98.22 E-value=0.00024 Score=68.80 Aligned_cols=236 Identities=18% Similarity=0.160 Sum_probs=161.5
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh---hHHHHhcCChHHHHHHhccc------hhhHHHHHHHHHHHHhh
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC---RDLVLSNGALMPLLAQFNEH------AKLSMLRNATWTLSNFC 228 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---~~~~~~~g~i~~L~~~l~~~------~~~~~~~~a~~~L~~l~ 228 (402)
.+...+.+|++.+++=+=.++..+.+++...+.. +..+.+.=+..-+-++|... +....+.-+...|+.+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 4667778888877777777888888888766532 23466655566666666431 34567788889999999
Q ss_pred hCCCCCchhhhhchHHHHHHhccCCCh-hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHH
Q 015687 229 RGKPQPLFEQTRPALPALERLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307 (402)
Q Consensus 229 ~~~~~~~~~~~~~~l~~L~~lL~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l 307 (402)
..+.......+.+.+|.|+.++.+.+. ++...++.+|..++..++ ..+.+++.|.++.|++.+.+ .+.....|+.++
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~-G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPE-GAKALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcH-hHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 865444455667889999999987766 999999999999995554 55789999999999999977 556788899999
Q ss_pred HHhhcCChHHHHH---HHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHH-HHHH----HHcCCHHHHHHHhcc
Q 015687 308 GNIVTGDDMQTQC---IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ-IQAI----IEAGIIGPLVNLLLN 379 (402)
Q Consensus 308 ~nl~~~~~~~~~~---i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~-~~~l----~~~~~i~~L~~ll~~ 379 (402)
.+++......... -.-..+++.+...+... ....+-+++..|+++....+.. .... .-..+...+..+|++
T Consensus 164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s 242 (543)
T PF05536_consen 164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS 242 (543)
T ss_pred HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence 9988754421110 00114556666777665 6677888999999988754211 1111 112355666677766
Q ss_pred C-CHHHHHHHHHHHHHhh
Q 015687 380 A-EFEIKKEAAWAISNAT 396 (402)
Q Consensus 380 ~-~~~v~~~a~~aL~nl~ 396 (402)
. .+.-|..|+.....+.
T Consensus 243 r~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 243 RLTPSQRDPALNLAASLL 260 (543)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 4 3555666655555543
No 103
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.21 E-value=0.00063 Score=57.51 Aligned_cols=243 Identities=19% Similarity=0.237 Sum_probs=151.9
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHH
Q 015687 82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPI 161 (402)
Q Consensus 82 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 161 (402)
+.....++.|+..|+++.... . +..+.+...+++ ..++.+.+.+|+..... .++|.
T Consensus 16 s~~l~~r~rALf~Lr~l~~~~---~---------i~~i~ka~~d~s-~llkhe~ay~LgQ~~~~-----------~Av~~ 71 (289)
T KOG0567|consen 16 SQPLQNRFRALFNLRNLLGPA---A---------IKAITKAFIDDS-ALLKHELAYVLGQMQDE-----------DAVPV 71 (289)
T ss_pred cHHHHHHHHHHHhhhccCChH---H---------HHHHHHhcccch-hhhccchhhhhhhhccc-----------hhhHH
Confidence 344567778888888876422 1 444555544444 56667778888776543 47888
Q ss_pred HHHhhCC--CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC--------
Q 015687 162 FVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-------- 231 (402)
Q Consensus 162 L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~-------- 231 (402)
|+..|.+ ..+-+|..|..+|+++. .+. .++.+-+.. +++-..+...+-.++..+-...
T Consensus 72 l~~vl~desq~pmvRhEAaealga~~--~~~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~ 139 (289)
T KOG0567|consen 72 LVEVLLDESQEPMVRHEAAEALGAIG--DPE---------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANS 139 (289)
T ss_pred HHHHhcccccchHHHHHHHHHHHhhc--chh---------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhcccccccc
Confidence 8887765 55778888999998885 221 233344444 5555666666666665554332
Q ss_pred -------CCCchhhhhchHHHHHHhccCC-Chh-HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHH
Q 015687 232 -------PQPLFEQTRPALPALERLIHSN-DDE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP 302 (402)
Q Consensus 232 -------~~~~~~~~~~~l~~L~~lL~~~-~~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~ 302 (402)
|.++ ....-+.-+-..|.+. .+. -++.+...|.|+. .++. +..+++-+..++.-.+..
T Consensus 140 ~p~~SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g--~Eea---------I~al~~~l~~~SalfrhE 206 (289)
T KOG0567|consen 140 SPYISVDPAPP--ANLSSVHELRAELLDETKPLFERYRAMFYLRNIG--TEEA---------INALIDGLADDSALFRHE 206 (289)
T ss_pred CccccCCCCCc--cccccHHHHHHHHHhcchhHHHHHhhhhHhhccC--cHHH---------HHHHHHhcccchHHHHHH
Confidence 1111 1112233333333322 222 2445555555543 2222 455667777788889999
Q ss_pred HHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCC
Q 015687 303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE 381 (402)
Q Consensus 303 a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 381 (402)
+.+++|.+-+. -.+|.|.+.|.. .+.+.||.+|+.+|+.|+. ++ .++.|.+.+.+.+
T Consensus 207 vAfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~---------~~~vL~e~~~D~~ 264 (289)
T KOG0567|consen 207 VAFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--ED---------CVEVLKEYLGDEE 264 (289)
T ss_pred HHHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HH---------HHHHHHHHcCCcH
Confidence 99999998653 346777776643 3478999999999999965 34 4566777888888
Q ss_pred HHHHHHHHHHHHHh
Q 015687 382 FEIKKEAAWAISNA 395 (402)
Q Consensus 382 ~~v~~~a~~aL~nl 395 (402)
+-|++.|..+|.-+
T Consensus 265 ~vv~esc~valdm~ 278 (289)
T KOG0567|consen 265 RVVRESCEVALDML 278 (289)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887654
No 104
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=7.1e-05 Score=71.55 Aligned_cols=239 Identities=18% Similarity=0.219 Sum_probs=143.5
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHH
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (402)
+...|.+.|.+.+++.++..++.-|+-.+-++.. . .+...+-..|...+...-+.|..++|-+.-+...
T Consensus 414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~-~------eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~---- 482 (929)
T KOG2062|consen 414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSAN-E------EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN---- 482 (929)
T ss_pred HHHHHHHHHHhccchhhhhhhhhhccchhccccc-H------HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc----
Confidence 3455566665554455555555555443333211 1 1233444455544555555555555544322211
Q ss_pred HHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHH--HhccCC
Q 015687 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALS--YLSDGT 272 (402)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~--~l~~~~ 272 (402)
..+++-++..-...++..+.+-..-.++-...+.. ..+=|.+-+++.+.|+-++.....++. +...++
T Consensus 483 ---~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrq-------e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn 552 (929)
T KOG2062|consen 483 ---QEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQ-------EDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN 552 (929)
T ss_pred ---HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhh-------hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc
Confidence 11233444444344555566555444443332211 244456667788888888888776553 333333
Q ss_pred hHHHHHHHHhCcHHHHHHh-cCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 015687 273 NDKIQAVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (402)
Q Consensus 273 ~~~~~~~~~~~~i~~L~~~-L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 351 (402)
. +++..|+.. .++.+.+|+..|..+||-++..++++ +|..+.+|..++++.||-.++.+|+
T Consensus 553 n---------kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALG 614 (929)
T KOG2062|consen 553 N---------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALG 614 (929)
T ss_pred h---------hhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHh
Confidence 2 356677776 57889999999999999999987743 6678888988889999999999999
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 352 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 352 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
-.|+|+...- .+..|-.+..+...-||+.|+.+++-+....
T Consensus 615 IaCAGtG~~e-------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 615 IACAGTGLKE-------AINLLEPLTSDPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred hhhcCCCcHH-------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence 9888643311 2223333445666779999999888776543
No 105
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.001 Score=63.60 Aligned_cols=296 Identities=11% Similarity=0.104 Sum_probs=181.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhcCCCcchH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
+..+.+.|.|.|+.....|+.++.++-+.+ ....+. +-+-++|-+++ .+-++..|+-||-.+-..+|+..
T Consensus 113 in~iknDL~srn~~fv~LAL~~I~niG~re---~~ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~- 183 (938)
T KOG1077|consen 113 INSIKNDLSSRNPTFVCLALHCIANIGSRE---MAEAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLV- 183 (938)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHhhccHh---HHHHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcccc-
Confidence 455556677788888888888888875432 222221 22225555544 25678889999999888766532
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhc---c--c-----------hhhH
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---E--H-----------AKLS 215 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~---~--~-----------~~~~ 215 (402)
-..+-+..++.+|.+.+-.+...+...+-.|+...|+.... .++.-+..|. . . +.+=
T Consensus 184 --~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~-----~~~~avs~L~riv~~~~t~~qdYTyy~vP~PW 256 (938)
T KOG1077|consen 184 --NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKT-----CLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPW 256 (938)
T ss_pred --ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhh-----hHHHHHHHHHHHHhhcccchhhceeecCCChH
Confidence 22357889999999988888888999998898776654222 2333333221 0 1 1233
Q ss_pred HHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCC----C---hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 015687 216 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN----D---DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 288 (402)
Q Consensus 216 ~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~----~---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L 288 (402)
+...++.+|.++-...+.........++..++...+.. + ......++.-.-+++.+.+..-+.+. .++..|
T Consensus 257 L~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~L 334 (938)
T KOG1077|consen 257 LQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQL 334 (938)
T ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHH
Confidence 45555555555511111112222234444444444321 1 11223333333344433332223232 457899
Q ss_pred HHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 015687 289 VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 368 (402)
Q Consensus 289 ~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 368 (402)
..+|.+.+..+|.-|+..+..+++... ..+.+-.+ .+.++..|+...|..+|+.|+-.|-.+|.. ++...
T Consensus 335 g~fls~rE~NiRYLaLEsm~~L~ss~~-s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~----- 404 (938)
T KOG1077|consen 335 GQFLSHRETNIRYLALESMCKLASSEF-SIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQ----- 404 (938)
T ss_pred HHHhhcccccchhhhHHHHHHHHhccc-hHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHH-----
Confidence 999999999999999999999998754 33434433 778889998544899999999999999863 22333
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 015687 369 IIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 369 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 396 (402)
++..|++.|.+.|+.+|++..-=+.-|+
T Consensus 405 IV~elLqYL~tAd~sireeivlKvAILa 432 (938)
T KOG1077|consen 405 IVAELLQYLETADYSIREEIVLKVAILA 432 (938)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 4556777788888888887655444444
No 106
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.18 E-value=5.5e-06 Score=59.64 Aligned_cols=87 Identities=31% Similarity=0.517 Sum_probs=70.8
Q ss_pred HHHHHHhc-cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHH
Q 015687 243 LPALERLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCI 321 (402)
Q Consensus 243 l~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i 321 (402)
+|.|++.| .++++.++..++++|+.+. +. .+++.|..++.++++.++..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG---DP--------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT---HH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC---CH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57888888 8889999999999998552 11 24789999999999999999999999883
Q ss_pred HhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 015687 322 INHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (402)
Q Consensus 322 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 351 (402)
+...++.|.+++.++.+..+|..|+++|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12478899999988746677999999885
No 107
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.18 E-value=2.2e-05 Score=67.83 Aligned_cols=191 Identities=15% Similarity=0.105 Sum_probs=121.3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCC--chhhHHHHhc--CChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhch
Q 015687 167 SSPTDDVREQAVWALGNVAGDS--PKCRDLVLSN--GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPA 242 (402)
Q Consensus 167 ~~~~~~v~~~a~~~L~nl~~~~--~~~~~~~~~~--g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 242 (402)
.+.+.+.+..++.-|..++..+ ......+... .++..+...+ .+....+...++.++..++..-...-......+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l-~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQL-SDLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 5678889999999999887655 2222222220 3445566666 566778999999999999987644444456789
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh---HHHH
Q 015687 243 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD---MQTQ 319 (402)
Q Consensus 243 l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~---~~~~ 319 (402)
+|.|++.+.+....++..+..+|..++........ + +++.+...+.+.++.+|..++..+..+....+ ....
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~-~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK-I----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H-H----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH-H----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 99999999999999999999999999876551111 1 15677778899999999999999999987555 1111
Q ss_pred H-HHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 015687 320 C-IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 364 (402)
Q Consensus 320 ~-i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 364 (402)
. ..-..+++.+...+.++ +++||..|-.++..+....++....+
T Consensus 171 ~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~~a~~~ 215 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPERAESI 215 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-HHH---
T ss_pred ccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCHhhccc
Confidence 1 11135788899999999 99999999888888876545544433
No 108
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.16 E-value=4.2e-06 Score=54.19 Aligned_cols=55 Identities=27% Similarity=0.466 Sum_probs=47.4
Q ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHH
Q 015687 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353 (402)
Q Consensus 297 ~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl 353 (402)
|.+|..|+++||+++...+...... ...+++.|..+|.++ ++.||..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~-~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPY-LPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHH-HHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHH-HHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 4689999999999998888776654 448899999999988 889999999999986
No 109
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.15 E-value=8.4e-05 Score=74.76 Aligned_cols=267 Identities=15% Similarity=0.147 Sum_probs=172.6
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcC----CC
Q 015687 73 LPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG----TS 147 (402)
Q Consensus 73 i~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~----~~ 147 (402)
++.+...+++ ...+.+..|+..|..+...- .++..-..++|.++.++.++. .++|..|+.+|+.+... .+
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i----~de~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYI----DDEVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhc----chHHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence 4555555554 45677888888888874322 122333457999999999998 99999999999887642 12
Q ss_pred cchHHHHhCCchHHHHHhhCC-CCHHHHHHHHHHHHHhhCC------------------Cchh-----------hHHHHh
Q 015687 148 ENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGD------------------SPKC-----------RDLVLS 197 (402)
Q Consensus 148 ~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~------------------~~~~-----------~~~~~~ 197 (402)
.....+.+ =++|.|-.++.+ ...-+|-.-+..|+.||.- .+.. ...+..
T Consensus 499 ~daniF~e-YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~ 577 (1431)
T KOG1240|consen 499 SDANIFPE-YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH 577 (1431)
T ss_pred ccchhhHh-hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH
Confidence 22233333 367888888877 3333444444444444311 1110 011111
Q ss_pred cCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHH
Q 015687 198 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 277 (402)
Q Consensus 198 ~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~ 277 (402)
.+...+.-|..++++-+++..+..+.-||.-... .....-+++.|..+|.+.|..++..-...+..++..-.-
T Consensus 578 --~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk--~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~--- 650 (1431)
T KOG1240|consen 578 --TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGK--EKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW--- 650 (1431)
T ss_pred --HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh--cccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee---
Confidence 2233333332555667778878778888765311 112245678888999999999998888888776643211
Q ss_pred HHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 278 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 278 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
.-++..++|.|.+-|.+..+.|...|++++.-++...--....+. .+++....+|-++ +.-||..++..+..+..
T Consensus 651 rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 651 RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence 124456789999999999999999999999999875432222232 4566778888899 99999999999987765
No 110
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.15 E-value=0.00051 Score=63.15 Aligned_cols=233 Identities=17% Similarity=0.071 Sum_probs=160.2
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccc-hhhHHHHHHHHHHHHhhhCCCCCchh
Q 015687 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFE 237 (402)
Q Consensus 159 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~ 237 (402)
.+.+..++-+++.++|..+.+++..+..+... -..+.+.+.--.++.-|... .+..-+..|...+..+...+.. ...
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~-~~~ 104 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG-PKE 104 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC-ccc
Confidence 33444344445599999999999999888764 45566666555556666443 3455677888888888877422 223
Q ss_pred hhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 015687 238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 317 (402)
Q Consensus 238 ~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~ 317 (402)
...+++..++.+..+.++..+..++.+++.++-.+++ .+..+|++..|...+.++...+....+.++-.+... +..
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~-p~t 180 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDS-PRT 180 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCC-cch
Confidence 3467888999999999999999999999999987764 478899999999999876666778888888888764 434
Q ss_pred HHHHHhCCChHHHHHHhcCC------Cch--hHHHHHHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHHhccCCHHHHHHH
Q 015687 318 TQCIINHQALPCLLDLLTQN------YKK--SIKKEACWTISNITAGNVNQIQAIIEA-GIIGPLVNLLLNAEFEIKKEA 388 (402)
Q Consensus 318 ~~~i~~~~~l~~L~~ll~~~------~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~a 388 (402)
++.+...--++.++.-+.+. .+. +.-..+..++..+...-+.-+....+. ..+..|+..|..+.+++|+..
T Consensus 181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~I 260 (371)
T PF14664_consen 181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAI 260 (371)
T ss_pred hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHH
Confidence 55444433355555444322 022 234455666666665433322222222 478899999999999999999
Q ss_pred HHHHHHhhc
Q 015687 389 AWAISNATS 397 (402)
Q Consensus 389 ~~aL~nl~~ 397 (402)
...+..+..
T Consensus 261 ldll~dllr 269 (371)
T PF14664_consen 261 LDLLFDLLR 269 (371)
T ss_pred HHHHHHHHC
Confidence 998887754
No 111
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00086 Score=64.94 Aligned_cols=283 Identities=13% Similarity=0.160 Sum_probs=180.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHH
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 153 (402)
..|.++|.|+....+..|..-+..+....++ . +..+|..++...+.+ .+++...---|...|+..++.. +
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d--v-----S~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLA--L 107 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD--V-----SLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLA--L 107 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCc--H-----HHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCce--e
Confidence 5788999999999999999888877665422 2 235888999999988 8999888878888887644432 2
Q ss_pred HhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCC
Q 015687 154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 233 (402)
Q Consensus 154 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 233 (402)
. -|..+-+-|.++|+.+|..|+++|..+=. -++. +++-.-++-+..+..+-+++.|+.++-.|-+-++.
T Consensus 108 L---SIntfQk~L~DpN~LiRasALRvlSsIRv-------p~Ia-PI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e 176 (968)
T KOG1060|consen 108 L---SINTFQKALKDPNQLIRASALRVLSSIRV-------PMIA-PIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE 176 (968)
T ss_pred e---eHHHHHhhhcCCcHHHHHHHHHHHHhcch-------hhHH-HHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh
Confidence 2 37888899999999999888888877621 1110 11111122223667889999999999998877543
Q ss_pred CchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 015687 234 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 313 (402)
Q Consensus 234 ~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~ 313 (402)
.. ..++..+-.+|.+.++-|.-.|+.++-.+|...-+.+ ++-..+++.+|-+-++-=+.-.+..|...+..
T Consensus 177 ~k----~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLI-----HknyrklC~ll~dvdeWgQvvlI~mL~RYAR~ 247 (968)
T KOG1060|consen 177 QK----DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLI-----HKNYRKLCRLLPDVDEWGQVVLINMLTRYARH 247 (968)
T ss_pred hH----HHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHh-----hHHHHHHHhhccchhhhhHHHHHHHHHHHHHh
Confidence 32 2566777788889999999999999988885433222 23356677777554433344455555444431
Q ss_pred C---hHHHH----------------------HHHhC---CChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 015687 314 D---DMQTQ----------------------CIINH---QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 365 (402)
Q Consensus 314 ~---~~~~~----------------------~i~~~---~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 365 (402)
. +.... ...+. -++...-.+|.+. ++.|...++.+...++-.. +..
T Consensus 248 ~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~-n~sVVmA~aql~y~lAP~~--~~~--- 321 (968)
T KOG1060|consen 248 QLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSR-NPSVVMAVAQLFYHLAPKN--QVT--- 321 (968)
T ss_pred cCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcC-CcHHHHHHHhHHHhhCCHH--HHH---
Confidence 1 10000 00010 1233455566777 7888888888888776432 222
Q ss_pred HcCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 366 EAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 366 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
.++..|+++|. ++..+|...+..+..+
T Consensus 322 --~i~kaLvrLLr-s~~~vqyvvL~nIa~~ 348 (968)
T KOG1060|consen 322 --KIAKALVRLLR-SNREVQYVVLQNIATI 348 (968)
T ss_pred --HHHHHHHHHHh-cCCcchhhhHHHHHHH
Confidence 24566777665 3344554444444443
No 112
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.05 E-value=0.00029 Score=65.71 Aligned_cols=263 Identities=14% Similarity=0.193 Sum_probs=132.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHH
Q 015687 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV 195 (402)
Q Consensus 116 i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 195 (402)
.|.|-..|++.- +.++.++++.++.++..+ ....+++ ..+..|-.+|.++....|-.|+++|..|+.-.|+....
T Consensus 266 rpfL~~wls~k~-emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~v- 340 (898)
T COG5240 266 RPFLNSWLSDKF-EMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSV- 340 (898)
T ss_pred HHHHHHHhcCcc-hhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeee-
Confidence 455555666655 789999999999988753 2233333 46788888999999999999999999999877642111
Q ss_pred HhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChH-
Q 015687 196 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND- 274 (402)
Q Consensus 196 ~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~- 274 (402)
..--++.| + .+.+. ..+.+++..|...............+|.+++=+.++=.-+..++++.|+..-.....
T Consensus 341 -cN~evEsL---I-sd~Nr---~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s 412 (898)
T COG5240 341 -CNKEVESL---I-SDENR---TISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLS 412 (898)
T ss_pred -cChhHHHH---h-hcccc---cchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHH
Confidence 11112222 2 22222 223344444444332222222233333333333333333444455444443321110
Q ss_pred HH----HHHHHhCc-------HHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHH--HH----h--------CCChHH
Q 015687 275 KI----QAVIEAGV-------CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQC--II----N--------HQALPC 329 (402)
Q Consensus 275 ~~----~~~~~~~~-------i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~--i~----~--------~~~l~~ 329 (402)
.. ..+.+.|+ ++.+...+. ..|.-++.|+..|+.+...+....-. ++ + ...+.+
T Consensus 413 ~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~-~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrh 491 (898)
T COG5240 413 YLDFLGSSLLQEGGLEFKKYMVDAISDAME-NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRH 491 (898)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHH
Confidence 00 01111121 111222221 12223333333333333222110000 00 0 012223
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 015687 330 LLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 330 L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 396 (402)
+..-+--. +.-+|..|+.+|+.++....+ ......+...|-+.+++.|.+||..|..+|.++-
T Consensus 492 IyNR~iLE-N~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 492 IYNRLILE-NNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHh-hhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 33322223 567889999999887753221 1111224557788899999999999999999875
No 113
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.0013 Score=65.38 Aligned_cols=280 Identities=15% Similarity=0.166 Sum_probs=170.2
Q ss_pred CcHHHHHHhhcC------C-CCHHHHHHHHHHHHHhhcCC--CcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHh
Q 015687 114 GVVPRFIEFLSR------D-DFPQLQFEAAWALTNIASGT--SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 184 (402)
Q Consensus 114 g~i~~L~~lL~~------~-~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl 184 (402)
|+++.+++.+.+ + +++.-+..|++.++++++-- +.--....+.-+++.+...++++.--+|..|||.++.+
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence 467777787762 2 23566778899998888521 11122333444567777788889899999999999999
Q ss_pred hCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCC---chhhhhchHHHHHHhccCCChhHHHHH
Q 015687 185 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP---LFEQTRPALPALERLIHSNDDEVLTDA 261 (402)
Q Consensus 185 ~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~l~~L~~lL~~~~~~v~~~a 261 (402)
+...- .+...-..++....+.|..+.+-.++..|+.+|..+.++.+.. -...+.+.+..|+++.+.-+.+....+
T Consensus 490 ~~~df--~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v 567 (1010)
T KOG1991|consen 490 SSIDF--KDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV 567 (1010)
T ss_pred HhccC--CChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence 84332 2222223367777788866888899999999999999886433 223446666677777766666655555
Q ss_pred HHHH-HHhccCChHHHHHHHHhCcHHHHHHhcCC---CCh---hhHHHHHHHHHHh---hc---CChHHHHHHHhCCChH
Q 015687 262 CWAL-SYLSDGTNDKIQAVIEAGVCPRLVELLRH---PSP---SVLIPALRTVGNI---VT---GDDMQTQCIINHQALP 328 (402)
Q Consensus 262 ~~~l-~~l~~~~~~~~~~~~~~~~i~~L~~~L~~---~~~---~v~~~a~~~l~nl---~~---~~~~~~~~i~~~~~l~ 328 (402)
+..+ +..+..-......+.. .+.....+++.. .++ .=...|..+|..+ .. ..++..+ -++..++|
T Consensus 568 me~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l~ 645 (1010)
T KOG1991|consen 568 MEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVLP 645 (1010)
T ss_pred HHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHH
Confidence 5433 3333221111111111 233444555542 222 2222333333333 22 1222222 23446778
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCCC
Q 015687 329 CLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 329 ~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 400 (402)
.+-.+|.+. -.++-++++-.+.+++...++.--.+. |+++.+.+.+.....+--....-+|.|+++.|+
T Consensus 646 vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~ 714 (1010)
T KOG1991|consen 646 VIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYVTYGT 714 (1010)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCc
Confidence 888888877 778888888888888765433222222 357778888887777778888888888877765
No 114
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.0013 Score=65.82 Aligned_cols=262 Identities=14% Similarity=0.197 Sum_probs=166.2
Q ss_pred hhccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCC
Q 015687 69 KLESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 147 (402)
Q Consensus 69 ~~~~i~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~ 147 (402)
.++.++-+...|.+ .++.++..|+..+..+.+. .+....+...|++..|+.+|.+. |..+..++.+|-.+++. +
T Consensus 1769 lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S~-~ 1843 (2235)
T KOG1789|consen 1769 LIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSSN-G 1843 (2235)
T ss_pred hhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhcC-c
Confidence 34566777777775 6788999999998887653 57788899999999999999875 58899999999999985 7
Q ss_pred cchHHHHhCCchHHHHHhhC-CCCHHHHHHHHHHHHHhhCCC---chhhHHHHhc----------CChHHHHHHhcc---
Q 015687 148 ENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDS---PKCRDLVLSN----------GALMPLLAQFNE--- 210 (402)
Q Consensus 148 ~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~---~~~~~~~~~~----------g~i~~L~~~l~~--- 210 (402)
+......+.|++..+..++. +..+..|.+++..++.+..+. |..+-.+++. ..-+..+..+..
T Consensus 1844 ~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~E 1923 (2235)
T KOG1789|consen 1844 QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSE 1923 (2235)
T ss_pred HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCC
Confidence 77777777888888887664 577889999999999876442 2221111110 001112222200
Q ss_pred --------------------------------------------------------------------------------
Q 015687 211 -------------------------------------------------------------------------------- 210 (402)
Q Consensus 211 -------------------------------------------------------------------------------- 210 (402)
T Consensus 1924 nPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~ 2003 (2235)
T KOG1789|consen 1924 NPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTE 2003 (2235)
T ss_pred CcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHH
Confidence
Q ss_pred ------------chhhHHHHHHHHHHHHhhhCCCCCchh-hhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHH
Q 015687 211 ------------HAKLSMLRNATWTLSNFCRGKPQPLFE-QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 277 (402)
Q Consensus 211 ------------~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~ 277 (402)
++..........++..|.+..|..... ---|.+|.++..+...+..+-..+++.|..++.+.. ..+
T Consensus 2004 LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~-C~~ 2082 (2235)
T KOG1789|consen 2004 LLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQF-CCD 2082 (2235)
T ss_pred HHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccH-HHH
Confidence 001111111222222333322211111 113455666655555555555678888888876543 446
Q ss_pred HHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcC-ChHHHHHHHhCCChHHHHHHhcCC
Q 015687 278 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG-DDMQTQCIINHQALPCLLDLLTQN 337 (402)
Q Consensus 278 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~-~~~~~~~i~~~~~l~~L~~ll~~~ 337 (402)
.+.....+..+++.+...-. ..--|+.+|..+... .++.....++.|++|.|+++|+..
T Consensus 2083 AMA~l~~i~~~m~~mkK~~~-~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2083 AMAQLPCIDGIMKSMKKQPS-LMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHhccccchhhHHHHHhcch-HHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 66666677777777754332 344777888777653 345556677899999999999765
No 115
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.0032 Score=61.13 Aligned_cols=251 Identities=18% Similarity=0.173 Sum_probs=143.6
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCC
Q 015687 121 EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 200 (402)
Q Consensus 121 ~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~ 200 (402)
+...+.. +-+|..|+.++..+-+-.++.... .+..+-.+|.+.++.|.-.|+.++-.+|-+.- +.+ ++.
T Consensus 150 ~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~q-----L~e~I~~LLaD~splVvgsAv~AF~evCPerl---dLI--Hkn 218 (968)
T KOG1060|consen 150 KAVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQ-----LEEVIKKLLADRSPLVVGSAVMAFEEVCPERL---DLI--HKN 218 (968)
T ss_pred HHhcCCc-HHHHHHHHHhhHHHhcCChhhHHH-----HHHHHHHHhcCCCCcchhHHHHHHHHhchhHH---HHh--hHH
Confidence 4444555 788888888888887766666553 34556667888888888888888887764421 222 234
Q ss_pred hHHHHHHhccchhhHHHHHHHHHHHHhhhCC-CCCc----------------------------hhhhhchHHHHHHhcc
Q 015687 201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPL----------------------------FEQTRPALPALERLIH 251 (402)
Q Consensus 201 i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~----------------------------~~~~~~~l~~L~~lL~ 251 (402)
...+.+++ .+-+.==+..+..+|..-|+.. +.+. .....-++...-.+|.
T Consensus 219 yrklC~ll-~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~ 297 (968)
T KOG1060|consen 219 YRKLCRLL-PDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ 297 (968)
T ss_pred HHHHHhhc-cchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh
Confidence 55666666 2222212233334444444443 2220 0111334555667788
Q ss_pred CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH------------
Q 015687 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ------------ 319 (402)
Q Consensus 252 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~------------ 319 (402)
+.++.+...++.++..++..... ..++..|+.+|.+. ..++.-.+..|..++...+.-..
T Consensus 298 S~n~sVVmA~aql~y~lAP~~~~-------~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssD 369 (968)
T KOG1060|consen 298 SRNPSVVMAVAQLFYHLAPKNQV-------TKIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSD 369 (968)
T ss_pred cCCcHHHHHHHhHHHhhCCHHHH-------HHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCC
Confidence 89999999999999999854321 23467788877643 34566666666666543331111
Q ss_pred -------------HHHhC----CChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCH
Q 015687 320 -------------CIINH----QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF 382 (402)
Q Consensus 320 -------------~i~~~----~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 382 (402)
.++++ .+++-+...+.+. +..+...++.+|+.++...... ..-++.-|+.++.+.+.
T Consensus 370 p~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~-d~~faa~aV~AiGrCA~~~~sv-----~~tCL~gLv~Llsshde 443 (968)
T KOG1060|consen 370 PTQVKILKLEILSNLANESNISEILRELQTYIKSS-DRSFAAAAVKAIGRCASRIGSV-----TDTCLNGLVQLLSSHDE 443 (968)
T ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHhhCch-----hhHHHHHHHHHHhcccc
Confidence 01111 2233344444444 4456666666666555421111 12256677777777777
Q ss_pred HHHHHHHHHHHHhhc
Q 015687 383 EIKKEAAWAISNATS 397 (402)
Q Consensus 383 ~v~~~a~~aL~nl~~ 397 (402)
.|..+|...|..+..
T Consensus 444 ~Vv~eaV~vIk~Llq 458 (968)
T KOG1060|consen 444 LVVAEAVVVIKRLLQ 458 (968)
T ss_pred hhHHHHHHHHHHHHh
Confidence 777777777766653
No 116
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.00 E-value=0.0022 Score=63.10 Aligned_cols=306 Identities=12% Similarity=0.069 Sum_probs=180.9
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHH
Q 015687 82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPI 161 (402)
Q Consensus 82 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 161 (402)
+..|.+...+...+.++.+.. +...-...-++...+..+..+..+-++..|+.+++..++ .+...... .+++..
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~---~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~-p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSST---VINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQ-PMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccc-hHHHHH
Confidence 455777777777777765431 111111112355556666555446788888888887773 33322222 378888
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhc-cchhhHHHHHHHHHHHHhhhCCCCCchhhhh
Q 015687 162 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQTR 240 (402)
Q Consensus 162 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 240 (402)
|.++....+.++.-....+|+..+..+|+.. ...+..+.|..+.++. .+.|+.+...+-.++..++... ........
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~e 612 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQE 612 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchHH
Confidence 9999988889999999999999999888753 3345556666666653 4567888888888888888752 22233446
Q ss_pred chHHHHHHhccCCC----hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-CCCChhhHHHHHHHHHHhhcCCh
Q 015687 241 PALPALERLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDD 315 (402)
Q Consensus 241 ~~l~~L~~lL~~~~----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L-~~~~~~v~~~a~~~l~nl~~~~~ 315 (402)
.++|.++..|..++ .....-++..|..+..+.+.-....+-.-++|.+.++. .+++......+-.|+..+...+.
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 78999999997765 45555566666655543322223333344677777775 45566788889999999988877
Q ss_pred HHHHHHHhCCChH------HHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH-HHHHHhccCCHHHHHHH
Q 015687 316 MQTQCIINHQALP------CLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIG-PLVNLLLNAEFEIKKEA 388 (402)
Q Consensus 316 ~~~~~i~~~~~l~------~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~-~L~~ll~~~~~~v~~~a 388 (402)
++...--+.++.. .+-++|+...+......+...+..|..+-+..+...++. ++. .+.++-+.....+-..-
T Consensus 693 eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~lsviQsL 771 (1005)
T KOG2274|consen 693 EQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQQAETLSVIQSL 771 (1005)
T ss_pred HHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhhHHHHHHH
Confidence 7666555444433 344444333122222233333333433322222222221 122 22333333555666665
Q ss_pred HHHHHHhh
Q 015687 389 AWAISNAT 396 (402)
Q Consensus 389 ~~aL~nl~ 396 (402)
+.+++.+.
T Consensus 772 i~VfahL~ 779 (1005)
T KOG2274|consen 772 IMVFAHLV 779 (1005)
T ss_pred HHHHHHHh
Confidence 55555554
No 117
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.00029 Score=72.68 Aligned_cols=311 Identities=13% Similarity=0.153 Sum_probs=182.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhc-cCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc-CCCcchH
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLS-IERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS-GTSENTR 151 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s-~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~-~~~~~~~ 151 (402)
..+...+.+.+|..+..++.=|..++. -...+.+.. -...+...|.++|.+.| +-.|..|.+-++-+-+ ++....+
T Consensus 821 ~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l-~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k~ 898 (1702)
T KOG0915|consen 821 KLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVL-MLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLKK 898 (1702)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhh-ccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhHH
Confidence 455567778899888886543333322 111233322 22335688999999888 8889988888775433 2233333
Q ss_pred HHHhCCchHHHHHhhCC-----CCHHHHH-------------HHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchh
Q 015687 152 VVIDHGAVPIFVRLLSS-----PTDDVRE-------------QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAK 213 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~-----~~~~v~~-------------~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~ 213 (402)
.+++ +.+..|..-=.+ ++.++.+ ....=|+|||.+-... + .+-.++++.+.+..
T Consensus 899 ~LV~-sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qP-d------LVYKFM~LAnh~A~ 970 (1702)
T KOG0915|consen 899 SLVD-SLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQP-D------LVYKFMQLANHNAT 970 (1702)
T ss_pred HHHH-HHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCCh-H------HHHHHHHHhhhhch
Confidence 3333 233333331010 1222221 1223455555432210 1 23345555544444
Q ss_pred hHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC
Q 015687 214 LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR 293 (402)
Q Consensus 214 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~ 293 (402)
-.-+.-|++.+..++.............++|.|...=.++|..|+.....+-.-|...+...++... ..+++.|+.-|.
T Consensus 971 wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~lt 1049 (1702)
T KOG0915|consen 971 WNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVNLT 1049 (1702)
T ss_pred hhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHhcc
Confidence 5556667777888877654444455677788887777788888886665555555555444444333 357888999999
Q ss_pred CCChhhHHHHHHHHHHhhcCChHHHHHHHhC--CChHHHHHHhcCCCchhHHHH---HHHHHHHHhc--C---CHHHHHH
Q 015687 294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINH--QALPCLLDLLTQNYKKSIKKE---ACWTISNITA--G---NVNQIQA 363 (402)
Q Consensus 294 ~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~--~~l~~L~~ll~~~~~~~v~~~---a~~~L~nl~~--~---~~~~~~~ 363 (402)
+..+.+|+.+|-++..+..+.+. ..+.+. .+...+.+.+++- .+.||+. ++.+|+.+|. + ++..-+.
T Consensus 1050 ~kewRVReasclAL~dLl~g~~~--~~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~ 1126 (1702)
T KOG0915|consen 1050 SKEWRVREASCLALADLLQGRPF--DQVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKGKE 1126 (1702)
T ss_pred chhHHHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHH
Confidence 99999999999999999998762 122221 3344555556555 5667754 4666666664 1 2222233
Q ss_pred HHHcCCHHHHHHH-hccCCHHHHHHHHHHHHHhhcCC
Q 015687 364 IIEAGIIGPLVNL-LLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 364 l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
.++. ++|.|++- +-+.-.++|.-++.++..++.+.
T Consensus 1127 ~l~~-iLPfLl~~gims~v~evr~~si~tl~dl~Kss 1162 (1702)
T KOG0915|consen 1127 ALDI-ILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSS 1162 (1702)
T ss_pred HHHH-HHHHHhccCcccchHHHHHHHHHHHHHHHHhc
Confidence 3333 56666553 12556789999999999888654
No 118
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.99 E-value=0.0084 Score=56.68 Aligned_cols=314 Identities=15% Similarity=0.135 Sum_probs=173.2
Q ss_pred HHHHHhhcCCCH---HHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc-
Q 015687 74 PAMVAGVWSDDR---NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN- 149 (402)
Q Consensus 74 ~~l~~~l~s~~~---~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~- 149 (402)
|.++..|..+++ ......+.+|..+.. + .+..+.+.. .++..+-..+....+.+.-..++.+|.++.....+.
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~-~-~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~ 78 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALST-S-PQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK 78 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHC-C-hhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc
Confidence 566667765544 556667788888743 2 222333222 455555555554433566677777777776533222
Q ss_pred ----hHHHHhCCchHHHHHhhCC-----C--CHHHHHHHHHHHHHhhCCCchh-hHHHHhcCChHHHHHHhc--------
Q 015687 150 ----TRVVIDHGAVPIFVRLLSS-----P--TDDVREQAVWALGNVAGDSPKC-RDLVLSNGALMPLLAQFN-------- 209 (402)
Q Consensus 150 ----~~~~~~~g~i~~L~~lL~~-----~--~~~v~~~a~~~L~nl~~~~~~~-~~~~~~~g~i~~L~~~l~-------- 209 (402)
.....+..+++.+..+... . ++.+.+.+...++.+...-+.- ++.+ +..+..++.
T Consensus 79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~-----~~~~~~lf~~~~~~~~~ 153 (415)
T PF12460_consen 79 QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI-----LDELYSLFLSPKSFSPF 153 (415)
T ss_pred ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH-----HHHHHHHHccccccCCC
Confidence 2333344477877776532 1 2556666666666665443322 2222 333333331
Q ss_pred --cch-hhHHHHHHHHHHHH-hhhCCCCCchhhhhchHHHHHHhcc-CCChhHHHHHHHHHHHhccC--ChHHHHHHH--
Q 015687 210 --EHA-KLSMLRNATWTLSN-FCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDG--TNDKIQAVI-- 280 (402)
Q Consensus 210 --~~~-~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~l~~l~~~--~~~~~~~~~-- 280 (402)
... ...........+.. ++.-++..........+..++.+.. ..++..+..++.+++.+... .++....++
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~ 233 (415)
T PF12460_consen 154 QPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDS 233 (415)
T ss_pred CccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHH
Confidence 000 00111122222222 2222233322233345555555543 33466666666666666543 111111110
Q ss_pred -----------------------------------HhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH--------
Q 015687 281 -----------------------------------EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-------- 317 (402)
Q Consensus 281 -----------------------------------~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~-------- 317 (402)
....++.|+.+|.+ +.+...+.+.++-+....+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~ 311 (415)
T PF12460_consen 234 LLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHAN 311 (415)
T ss_pred HHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccch
Confidence 01234556666655 556778888888888763322
Q ss_pred -----HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHH
Q 015687 318 -----TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 392 (402)
Q Consensus 318 -----~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 392 (402)
.+.++. .++|.|++..... +...|.....+|+++..+-|..+-.---..++|.|++.|..++.+++..++.+|
T Consensus 312 vklLykQR~F~-~~~p~L~~~~~~~-~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL 389 (415)
T PF12460_consen 312 VKLLYKQRFFT-QVLPKLLEGFKEA-DDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETL 389 (415)
T ss_pred hhhHHhHHHHH-HHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 233333 4677777777766 666888889999999998776442222245899999999999999999999999
Q ss_pred HHhhcCC
Q 015687 393 SNATSGG 399 (402)
Q Consensus 393 ~nl~~~~ 399 (402)
..+....
T Consensus 390 ~~~l~~~ 396 (415)
T PF12460_consen 390 KMILEEA 396 (415)
T ss_pred HHHHHcC
Confidence 9887654
No 119
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=7.1e-05 Score=70.70 Aligned_cols=263 Identities=16% Similarity=0.119 Sum_probs=162.9
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHH---HHHHhh--cCCCcch
Q 015687 76 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAW---ALTNIA--SGTSENT 150 (402)
Q Consensus 76 l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~---~L~~l~--~~~~~~~ 150 (402)
+.....+.|+.++..|+..+..+-.+. .--+ -.....++.++++. .+++..|+. .++|.. ....+..
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL~~-----~~Y~~A~~~lsD~~-e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGF--KLSK-----ACYSRAVKHLSDDY-EDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccc--cccH-----HHHHHHHHHhcchH-HHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 566666777777777777777763221 1111 13567788888877 899988855 455555 1112222
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHH--hh
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN--FC 228 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~--l~ 228 (402)
+.-....++..++..+.+.+..||-.|+.+||.+-.-+.+ ++.+-.=..++.-+..... ..+..-...++ .+
T Consensus 275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee----~i~QTLdKKlms~lRRkr~--ahkrpk~l~s~GewS 348 (823)
T KOG2259|consen 275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEE----IIQQTLDKKLMSRLRRKRT--AHKRPKALYSSGEWS 348 (823)
T ss_pred hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHH----HHHHHHHHHHhhhhhhhhh--cccchHHHHhcCCcc
Confidence 2222235788899999999999999999999987544333 2222122222221110000 00000011111 11
Q ss_pred hCC----CCCc--------hhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC
Q 015687 229 RGK----PQPL--------FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296 (402)
Q Consensus 229 ~~~----~~~~--------~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~ 296 (402)
+++ ..+. .....|...++++-|.++--+|+.+|+..++.|+...+.... ..++.|+.+++++.
T Consensus 349 sGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~ 423 (823)
T KOG2259|consen 349 SGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEI 423 (823)
T ss_pred cCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHH
Confidence 111 1111 112256667888888888889999999999999987765432 34788999999999
Q ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 015687 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 364 (402)
Q Consensus 297 ~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 364 (402)
..||..|+.++..|+.. ..++...++.+...|.+. ++++|.+.--.|.+.-..+-+.+..+
T Consensus 424 ~~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~-s~dvRe~l~elL~~~~~~d~~~i~m~ 484 (823)
T KOG2259|consen 424 EVVRLKAIFALTMISVH------LAIREEQLRQILESLEDR-SVDVREALRELLKNARVSDLECIDMC 484 (823)
T ss_pred HHHHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999999998764 234445577788888877 88888877777766544555555443
No 120
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.97 E-value=0.00059 Score=67.68 Aligned_cols=306 Identities=12% Similarity=0.113 Sum_probs=196.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
.+.....++....+.....+.-...+....+.++...+..+.++|.+-.++.+.+ ..++...+..+..+....+ ...
T Consensus 357 ~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~-~~vr~a~a~~~~~~~p~~~--k~~ 433 (759)
T KOG0211|consen 357 VPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNA-LHVRSALASVITGLSPILP--KER 433 (759)
T ss_pred hhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhccc-chHHHHHhccccccCccCC--cCc
Confidence 3444555555555555555444444433333334444556666788888887777 7777777777666654333 111
Q ss_pred HHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC
Q 015687 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 232 (402)
-+ ....|.++..+++..+.++....+.+..+-...+...-.......++.+..+- ......++....+.+..++....
T Consensus 434 ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~-~d~~wRvr~ail~~ip~la~q~~ 511 (759)
T KOG0211|consen 434 TI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELA-EDLLWRVRLAILEYIPQLALQLG 511 (759)
T ss_pred Cc-cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhc-cchhHHHHHHHHHHHHHHHHhhh
Confidence 11 24678888889999999999999888766544433333444445666666665 44467788888888888876632
Q ss_pred CCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 015687 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 233 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
........-+.+...+.+...+++..+...+..++..... +.. ....++.++....+++...|...+.++.-++.
T Consensus 512 --~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~--~w~-~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~ 586 (759)
T KOG0211|consen 512 --VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGS--EWA-RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAE 586 (759)
T ss_pred --hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCc--chh-HHHhhHHHHHHhcCcccchhhHHHHHHHHHHH
Confidence 1111122334444445555677888888888777643221 111 12346777777766678888888888876654
Q ss_pred CChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHH
Q 015687 313 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA 391 (402)
Q Consensus 313 ~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 391 (402)
- .-+.+....++|.+..+..++ .+.||-.++..|--+... .. ...+..+.|.+..+..+.+.+++..|..+
T Consensus 587 v---~g~ei~~~~Llp~~~~l~~D~-vanVR~nvak~L~~i~~~L~~----~~~~~~v~pll~~L~~d~~~dvr~~a~~a 658 (759)
T KOG0211|consen 587 V---LGQEITCEDLLPVFLDLVKDP-VANVRINVAKHLPKILKLLDE----SVRDEEVLPLLETLSSDQELDVRYRAILA 658 (759)
T ss_pred H---hccHHHHHHHhHHHHHhccCC-chhhhhhHHHHHHHHHhhcch----HHHHHHHHHHHHHhccCcccchhHHHHHH
Confidence 2 112355567899999999999 999999999999988763 22 33444567788888888889999888888
Q ss_pred HHHhh
Q 015687 392 ISNAT 396 (402)
Q Consensus 392 L~nl~ 396 (402)
...+.
T Consensus 659 ~~~i~ 663 (759)
T KOG0211|consen 659 FGSIE 663 (759)
T ss_pred HHHHH
Confidence 76654
No 121
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.95 E-value=2.8e-05 Score=46.70 Aligned_cols=40 Identities=48% Similarity=0.642 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 358 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 358 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
++....+++.|+++.|+.++.++++++++.|+|+|.|++.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3467788899999999999999999999999999999973
No 122
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.0052 Score=55.85 Aligned_cols=228 Identities=13% Similarity=0.168 Sum_probs=160.8
Q ss_pred CchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCC-----Cc----chHHHHhCCchHHHHHhhCCCCHHH--
Q 015687 105 PPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-----SE----NTRVVIDHGAVPIFVRLLSSPTDDV-- 173 (402)
Q Consensus 105 ~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~-----~~----~~~~~~~~g~i~~L~~lL~~~~~~v-- 173 (402)
+-.-.+++.++++.|+++|.+.+ .++-...+..+..+...+ .+ ....+++.++++.|++-++.-+..+
T Consensus 116 dLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvke 194 (536)
T KOG2734|consen 116 DLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKE 194 (536)
T ss_pred HHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchh
Confidence 34456889999999999999998 899999999988887532 12 2466778899999999887533333
Q ss_pred ----HHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc-chhhHHHHHHHHHHHHhhhCCC-CCchhhhhchHHHHH
Q 015687 174 ----REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALE 247 (402)
Q Consensus 174 ----~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~-~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~ 247 (402)
...++..+-|+..-.+.+...+.+.|.+.-|+..+.. ..-......+..+++-+..+.. +......-.++..++
T Consensus 195 ea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL 274 (536)
T KOG2734|consen 195 EADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLL 274 (536)
T ss_pred hhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHH
Confidence 4566778888888888888888999998888886533 2444566778888888877753 222222244556555
Q ss_pred Hhc----cCC-----ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh--H
Q 015687 248 RLI----HSN-----DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD--M 316 (402)
Q Consensus 248 ~lL----~~~-----~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~--~ 316 (402)
+-+ .++ ..+..++...+|+.+......+ ..++...+++...-+++. ....+..++++|-....+.+ .
T Consensus 275 ~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr-~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~ 352 (536)
T KOG2734|consen 275 RQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANR-ERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTP 352 (536)
T ss_pred hhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhh-hhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchH
Confidence 544 111 3557778888888877666554 556666666666666655 55567889999999998876 6
Q ss_pred HHHHHHhCCChHHHHHHhc
Q 015687 317 QTQCIINHQALPCLLDLLT 335 (402)
Q Consensus 317 ~~~~i~~~~~l~~L~~ll~ 335 (402)
....+.+..++..+..+.-
T Consensus 353 ~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 353 NCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHHHHHhHHHHHHHHh
Confidence 6677778777777776543
No 123
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.93 E-value=0.00067 Score=66.75 Aligned_cols=163 Identities=13% Similarity=0.177 Sum_probs=123.3
Q ss_pred hhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc
Q 015687 213 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 292 (402)
Q Consensus 213 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L 292 (402)
+..-....=.+++.+..+++ +...+|-+++...+.|.++..-.-.-+-..+...++.. +. ++..+..=+
T Consensus 33 ~~~kidAmK~iIa~M~~G~d------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--lL---avNti~kDl 101 (757)
T COG5096 33 DYKKIDAMKKIIAQMSLGED------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--LL---AVNTIQKDL 101 (757)
T ss_pred hHHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--HH---HHHHHHhhc
Confidence 44444455566777777744 45677777777778899998888877878887766432 21 356777888
Q ss_pred CCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Q 015687 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP 372 (402)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~ 372 (402)
+++++.+|..|+++++.+=. ++ ++. .+++++.+++.++ .+.||++|+.++..+-.-+++ .+-+.|.+..
T Consensus 102 ~d~N~~iR~~AlR~ls~l~~--~e----l~~-~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~ 170 (757)
T COG5096 102 QDPNEEIRGFALRTLSLLRV--KE----LLG-NIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLDKD---LYHELGLIDI 170 (757)
T ss_pred cCCCHHHHHHHHHHHHhcCh--HH----HHH-HHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcCHh---hhhcccHHHH
Confidence 99999999999999988732 22 222 5678899999999 999999999999999865444 3446778888
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 373 LVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 373 L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
+..++.+.+|.|..+|..+|..+-.
T Consensus 171 l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 171 LKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhch
Confidence 8899999999999999999987643
No 124
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.90 E-value=0.0028 Score=62.53 Aligned_cols=168 Identities=17% Similarity=0.211 Sum_probs=123.8
Q ss_pred hcCCCHHHHHHHHHHHH-HHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCc
Q 015687 80 VWSDDRNIQLDATTQFR-KLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGA 158 (402)
Q Consensus 80 l~s~~~~~~~~a~~~l~-~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 158 (402)
+.+++...+..|+..+. .+..++ + .. ..++.+++.+.+.+ .+++...-.-|.+.+...|+. .+. +
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~--d-ms-----sLf~dViK~~~trd-~ElKrL~ylYl~~yak~~P~~--~lL---a 93 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGE--D-MS-----SLFPDVIKNVATRD-VELKRLLYLYLERYAKLKPEL--ALL---A 93 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCC--C-hH-----HHHHHHHHHHHhcC-HHHHHHHHHHHHHHhccCHHH--HHH---H
Confidence 56667777777775544 444333 2 22 24677888888666 899998888888899876632 222 5
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhh
Q 015687 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 238 (402)
Q Consensus 159 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 238 (402)
++.+.+=+.++|+.+|..|+++++-+= . ..+. ..+++++.+++ .++++.+++.|+.++..+-+-++. ...
T Consensus 94 vNti~kDl~d~N~~iR~~AlR~ls~l~--~----~el~-~~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld~~--l~~ 163 (757)
T COG5096 94 VNTIQKDLQDPNEEIRGFALRTLSLLR--V----KELL-GNIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLDKD--LYH 163 (757)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcC--h----HHHH-HHHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcCHh--hhh
Confidence 778888889999999999999999772 1 1222 22678888888 889999999999999999976432 222
Q ss_pred hhchHHHHHHhccCCChhHHHHHHHHHHHhccC
Q 015687 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDG 271 (402)
Q Consensus 239 ~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~ 271 (402)
..|.+..+..++.+.||.+..+|+.++..+...
T Consensus 164 ~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 164 ELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred cccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 245677788888899999999999999888654
No 125
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.0015 Score=59.15 Aligned_cols=223 Identities=13% Similarity=0.123 Sum_probs=160.8
Q ss_pred hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhccC----CCC----chhHHhhcCcHHHHHHhhcCCC-----CHHHHHHH
Q 015687 69 KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIE----RSP----PINEVIQSGVVPRFIEFLSRDD-----FPQLQFEA 135 (402)
Q Consensus 69 ~~~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~----~~~----~~~~~~~~g~i~~L~~lL~~~~-----~~~~~~~a 135 (402)
.+.+++.++++|..++.++....+..+..+...+ ... -++.+++.++++.|++.+..-+ ...-.+.+
T Consensus 123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~ 202 (536)
T KOG2734|consen 123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT 202 (536)
T ss_pred HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence 3468899999999999999999999998885432 112 2466788999999999887533 12234556
Q ss_pred HHHHHHhhcCCCcchHHHHhCCchHHHHHhhC-C-CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc---
Q 015687 136 AWALTNIASGTSENTRVVIDHGAVPIFVRLLS-S-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--- 210 (402)
Q Consensus 136 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~--- 210 (402)
+.++-|+..-.+.....+++.|.+.-|+.-+. . +-..-...|..+|.-+..++.+.+..+-...++..+++.+.-
T Consensus 203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~ 282 (536)
T KOG2734|consen 203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR 282 (536)
T ss_pred HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence 77888999988999999999988887777333 2 445566788888888888887778888888899999988731
Q ss_pred -c----hhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCCh--HHHHHHHHhC
Q 015687 211 -H----AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN--DKIQAVIEAG 283 (402)
Q Consensus 211 -~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~--~~~~~~~~~~ 283 (402)
+ ...+...+..-+|+.+.....+........++....-+++. ....+..++..|-+...+++ +....+++.+
T Consensus 283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~l 361 (536)
T KOG2734|consen 283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEIL 361 (536)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 1 24567788888888877775444443444555554444444 55567788888888877665 5666788887
Q ss_pred cHHHHHHhc
Q 015687 284 VCPRLVELL 292 (402)
Q Consensus 284 ~i~~L~~~L 292 (402)
++..+...+
T Consensus 362 GLrtiF~~F 370 (536)
T KOG2734|consen 362 GLRTIFPLF 370 (536)
T ss_pred hHHHHHHHH
Confidence 777777664
No 126
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0012 Score=63.95 Aligned_cols=256 Identities=18% Similarity=0.193 Sum_probs=129.0
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHH
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (402)
..+.+-.++.+.. +.+..+|+.++.++...++.... .++..|-.+++++...+|-.|.++|..+|.-.|.....
T Consensus 246 ~~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 246 LFPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred HHHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 3455556666666 88999999999988765433222 27888888999999999999999999999776642111
Q ss_pred HHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChH
Q 015687 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 274 (402)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~ 274 (402)
+ .--++.++ .+.+ +..+..++..|..............-++.+++=+.++..-+..++..+|+........
T Consensus 320 c--N~elE~lI----td~N---rsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~ 390 (865)
T KOG1078|consen 320 C--NLDLESLI----TDSN---RSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHT 390 (865)
T ss_pred c--chhHHhhh----cccc---cchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHH
Confidence 0 00122222 1111 1222333333333322222222223333333333333333344444444333211000
Q ss_pred H-----HHHHHHhC-------------------------cHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhC
Q 015687 275 K-----IQAVIEAG-------------------------VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH 324 (402)
Q Consensus 275 ~-----~~~~~~~~-------------------------~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~ 324 (402)
. ...+.+.| ++..|+.++.+.. ...-+.++++-+....+.. .-..
T Consensus 391 ~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a---~~Ps 465 (865)
T KOG1078|consen 391 VMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKA---PNPS 465 (865)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCC---CCcc
Confidence 0 00011111 1222222221111 1112222222222111100 0011
Q ss_pred CChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 015687 325 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 325 ~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 396 (402)
..+..+.+.+--. +..+|..|..+|.++.++++.-.. .+...|.+.+.+.|..+|..|..+|.++-
T Consensus 466 kyir~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 466 KYIRFIYNRVILE-NAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhHHHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 2233334333333 678899999999999865444222 25567888899999999999999999886
No 127
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.83 E-value=0.0024 Score=64.82 Aligned_cols=232 Identities=17% Similarity=0.168 Sum_probs=150.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCC-CCchhH-HhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCc-
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIER-SPPINE-VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE- 148 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~-~~~~~~-~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~- 148 (402)
.+|.++-++..++..++..|+..|..++..-+ -++.+. +...=++|.|-.++.+++...++..-+.+|..+|..-..
T Consensus 463 VlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rF 542 (1431)
T KOG1240|consen 463 VLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRF 542 (1431)
T ss_pred hHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHH
Confidence 46888889999999999999999999876432 233333 333447888889988844356677767777766631100
Q ss_pred --chHHHHhC-------------------------CchHHHHHhhCCCCHHHHHHHHHHHHHhhCC--CchhhHHHHhcC
Q 015687 149 --NTRVVIDH-------------------------GAVPIFVRLLSSPTDDVREQAVWALGNVAGD--SPKCRDLVLSNG 199 (402)
Q Consensus 149 --~~~~~~~~-------------------------g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~--~~~~~~~~~~~g 199 (402)
....+..+ ++-.....++.++.+.|+...+..|+-||.. ....-+.
T Consensus 543 le~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~----- 617 (1431)
T KOG1240|consen 543 LELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDV----- 617 (1431)
T ss_pred HHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccc-----
Confidence 01111111 1223344466666667777777776666621 1111111
Q ss_pred ChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHH
Q 015687 200 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAV 279 (402)
Q Consensus 200 ~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 279 (402)
++..|+..| .+.|..++......+..+|-.-.. ......++|.|.+.|.+..+.|...|+.++.-|+...--....+
T Consensus 618 iLshLiTfL-NDkDw~LR~aFfdsI~gvsi~VG~--rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v 694 (1431)
T KOG1240|consen 618 ILSHLITFL-NDKDWRLRGAFFDSIVGVSIFVGW--RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV 694 (1431)
T ss_pred hHHHHHHHh-cCccHHHHHHHHhhccceEEEEee--eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH
Confidence 466677777 555777777666666655533211 11235678889999999999999999999999986544222223
Q ss_pred HHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 015687 280 IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 313 (402)
Q Consensus 280 ~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~ 313 (402)
. .+++....+|-+++.-+|..++.+|..+...
T Consensus 695 ~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 695 K--DILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred H--HHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 2 4677888899999999999999999888753
No 128
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.0089 Score=57.51 Aligned_cols=303 Identities=17% Similarity=0.166 Sum_probs=185.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
+--+.+++|.++-...++-+-..+.-++..+ .+..+. ++..+.+=|.+.+ +.....|+.+++|+.+ .+...
T Consensus 75 GhmEaV~LLss~kysEKqIGYl~is~L~n~n-~dl~kl-----vin~iknDL~srn-~~fv~LAL~~I~niG~--re~~e 145 (938)
T KOG1077|consen 75 GHMEAVNLLSSNKYSEKQIGYLFISLLLNEN-SDLMKL-----VINSIKNDLSSRN-PTFVCLALHCIANIGS--REMAE 145 (938)
T ss_pred chHHHHHHhhcCCccHHHHhHHHHHHHHhcc-hHHHHH-----HHHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHH
Confidence 4456677787766555555544444444322 233332 2445555566666 7888999999999987 45555
Q ss_pred HHHhCCchHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 152 VVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
.+.. -|+ ++|-+ ..+-++..|+-+|..|-...|. .+-..+-...++.+| .+.+-.+...+...+..|+.
T Consensus 146 a~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk 216 (938)
T KOG1077|consen 146 AFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVK 216 (938)
T ss_pred Hhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHh-CccccceeeehHHHHHHHHH
Confidence 5443 244 45544 3466888888899889877764 333335678899999 66677788888888888888
Q ss_pred CCCCCchhhhhchHHHHHHhccC-------------CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC-
Q 015687 230 GKPQPLFEQTRPALPALERLIHS-------------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP- 295 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL~~-------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~- 295 (402)
..|.........++..|..+... +.|-+....+++|.++-...+.... ..-..+++.++...+..
T Consensus 217 ~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r-~~l~evl~~iLnk~~~~~ 295 (938)
T KOG1077|consen 217 KNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTR-ARLNEVLERILNKAQEPP 295 (938)
T ss_pred cCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHH-HHHHHHHHHHHhccccCc
Confidence 76544433333334433333211 3477888899999887433222111 11112344444444321
Q ss_pred ---C---hhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 015687 296 ---S---PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 369 (402)
Q Consensus 296 ---~---~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 369 (402)
+ .......++-.-+++.+-+..-+.+. ..+..|-++|.+. ...+|--|.-.++.++... ..+..+-.+
T Consensus 296 ~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~-~s~davK~h-- 369 (938)
T KOG1077|consen 296 KSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHR-ETNIRYLALESMCKLASSE-FSIDAVKKH-- 369 (938)
T ss_pred cccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcc-cccchhhhHHHHHHHHhcc-chHHHHHHH--
Confidence 1 11223344444445444332222222 4567888999988 8899999988888888742 223344333
Q ss_pred HHHHHHHhc-cCCHHHHHHHHHHHHHhhcCC
Q 015687 370 IGPLVNLLL-NAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 370 i~~L~~ll~-~~~~~v~~~a~~aL~nl~~~~ 399 (402)
...++..|+ ..|..+|+.|+..|..++..+
T Consensus 370 ~d~Ii~sLkterDvSirrravDLLY~mcD~~ 400 (938)
T KOG1077|consen 370 QDTIINSLKTERDVSIRRRAVDLLYAMCDVS 400 (938)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHhchh
Confidence 677888888 688999999999998887654
No 129
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.82 E-value=4.7e-05 Score=45.71 Aligned_cols=39 Identities=38% Similarity=0.753 Sum_probs=35.9
Q ss_pred CcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015687 147 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 185 (402)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~ 185 (402)
++++..+++.|+++.|+.++.+++.+++..++|+|+||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347788899999999999999999999999999999997
No 130
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.025 Score=57.13 Aligned_cols=310 Identities=15% Similarity=0.119 Sum_probs=175.1
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
.+..+++.+++.|..++..|+..+.++.+.- | .. +.+ .++...++++...+++..=..|+-+|+.+|...----.
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rl--p-~~-Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRL--P-PE-LAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccC--c-HH-HHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 4678888899999999999999999997643 3 11 111 14555566555443345556888899998874222222
Q ss_pred HHHhCCchHHHHHhhCC--------CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHh----ccchhhHHHHH
Q 015687 152 VVIDHGAVPIFVRLLSS--------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF----NEHAKLSMLRN 219 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l----~~~~~~~~~~~ 219 (402)
.+. .++|.++.-|.- ....||+.|+++++.++...... .+ + +++..|...| .-+.+...++.
T Consensus 417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~--~l-~-p~l~~L~s~LL~~AlFDrevncRRA 490 (1133)
T KOG1943|consen 417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS--DL-K-PVLQSLASALLIVALFDREVNCRRA 490 (1133)
T ss_pred HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh--hh-h-HHHHHHHHHHHHHHhcCchhhHhHH
Confidence 222 356666665531 34679999999999988554321 11 1 1222222222 14567778888
Q ss_pred HHHHHHHhhhCCCCC----chh-----------------------hhhc----hHHHHHHh-ccCCChhHHHHHHHHHHH
Q 015687 220 ATWTLSNFCRGKPQP----LFE-----------------------QTRP----ALPALERL-IHSNDDEVLTDACWALSY 267 (402)
Q Consensus 220 a~~~L~~l~~~~~~~----~~~-----------------------~~~~----~l~~L~~l-L~~~~~~v~~~a~~~l~~ 267 (402)
|..++-......++. +.. ...+ ++..++.. +.+-|..+++.+.++|..
T Consensus 491 AsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~ 570 (1133)
T KOG1943|consen 491 ASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHK 570 (1133)
T ss_pred HHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 888887665442221 000 0011 22222211 345689999999999999
Q ss_pred hccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH---HHHH---HhCC---ChHHHHH-HhcCC
Q 015687 268 LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ---TQCI---INHQ---ALPCLLD-LLTQN 337 (402)
Q Consensus 268 l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~---~~~i---~~~~---~l~~L~~-ll~~~ 337 (402)
|+...++ ....++++++++.....+...+.-+..+.|.++.+.... ...+ .-++ .++.+.. .+..+
T Consensus 571 Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg 646 (1133)
T KOG1943|consen 571 LSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRG 646 (1133)
T ss_pred HHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccc
Confidence 9865543 334577888888887777777766655555555322110 0000 0112 1222222 22222
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 338 YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 338 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
...-++...+..+-++...........+-.+.-..+.+.+..++ .+|..|.++++.++.
T Consensus 647 ~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s 705 (1133)
T KOG1943|consen 647 QGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVS 705 (1133)
T ss_pred hHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHH
Confidence 12345556666777776654443333333333334444443344 788888888887653
No 131
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.80 E-value=0.00027 Score=51.36 Aligned_cols=92 Identities=14% Similarity=0.193 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc
Q 015687 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN 379 (402)
Q Consensus 300 ~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~ 379 (402)
|..++.+|+.++.+-.......++ .++|+++..+.++ ++.||..||-+|.|++....+.+.... ..+++.|.+++.+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~D 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSAD 79 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence 566778888887766655554444 6889999999999 999999999999999975444333322 3489999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 015687 380 AEFEIKKEAAWAISNA 395 (402)
Q Consensus 380 ~~~~v~~~a~~aL~nl 395 (402)
.++.||..| ..|-++
T Consensus 80 ~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 80 PDENVRSAA-ELLDRL 94 (97)
T ss_pred CchhHHHHH-HHHHHH
Confidence 999998877 555544
No 132
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.78 E-value=0.00023 Score=51.71 Aligned_cols=68 Identities=16% Similarity=0.221 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015687 299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQIQAIIE 366 (402)
Q Consensus 299 v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 366 (402)
++...+++|+|++..++...+.+.+.|++|.++..-.- ..+|-+|+.|.|++-|++.++++....+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 46678999999999999999999999999999986632 238999999999999999999988766554
No 133
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.77 E-value=0.00013 Score=53.02 Aligned_cols=67 Identities=16% Similarity=0.354 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhh--CCCCHHHHHHHHHHHHHhhCCCchhhHHHHh
Q 015687 131 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL--SSPTDDVREQAVWALGNVAGDSPKCRDLVLS 197 (402)
Q Consensus 131 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 197 (402)
++...+.+|+|++..++...+.+.+.|++|.++... ++.+|-+++-|++++.||+.++++++..+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 356778999999999999999999999999999965 4578999999999999999999998777654
No 134
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.75 E-value=0.002 Score=58.28 Aligned_cols=241 Identities=13% Similarity=0.134 Sum_probs=157.7
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhh-----HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHH
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR-----DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~-----~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~ 226 (402)
.+...+.+..|+..|..-+-+.+..+.....++.......+ +.+.. ..-+.+..++....++++.-.+...|..
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHHH
Confidence 34455889999999998899999999999999986654332 22322 1233334444344577777788888888
Q ss_pred hhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhcCCCChhhHHHH
Q 015687 227 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRHPSPSVLIPA 303 (402)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~~L~~~~~~v~~~a 303 (402)
++++.+-.......+.+-.+....+.++-++..+|..++..+..........++.. ..+.....+|.+++.-++..+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 88774333333346677778888889999999999999998776665555555555 356778888999999999999
Q ss_pred HHHHHHhhcCChHH---HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHH-H--cCCHHHHHH
Q 015687 304 LRTVGNIVTGDDMQ---TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAII-E--AGIIGPLVN 375 (402)
Q Consensus 304 ~~~l~nl~~~~~~~---~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~-~--~~~i~~L~~ 375 (402)
+..||.+....... ..++-+..-+..++.+|.+. +..++-+|..++--+.+ ..+..+..++ . ..++..|-+
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~ 308 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKD 308 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHT
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHh
Confidence 99999999754422 23333446688999999998 99999999999998887 3344455544 2 223444444
Q ss_pred HhccC--CHHHHHHHHHHHHH
Q 015687 376 LLLNA--EFEIKKEAAWAISN 394 (402)
Q Consensus 376 ll~~~--~~~v~~~a~~aL~n 394 (402)
...+. |.....+=...+..
T Consensus 309 f~~~~~~D~qf~~EK~~li~~ 329 (335)
T PF08569_consen 309 FHTDRTDDEQFEDEKAYLIKQ 329 (335)
T ss_dssp TTTT--S-CHHHHHHHHHHHH
T ss_pred CCCCCCccccHHHHHHHHHHH
Confidence 43333 44444444444433
No 135
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.0059 Score=62.11 Aligned_cols=242 Identities=12% Similarity=0.100 Sum_probs=155.0
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHh--CCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hhhHHHH
Q 015687 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID--HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRDLVL 196 (402)
Q Consensus 120 ~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~ 196 (402)
.....+.++..+|..+..+|..++.. +.......+ ..+...|..-+++.....+...+.+|..|....+ +..+.+.
T Consensus 659 ~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~ 737 (1176)
T KOG1248|consen 659 DPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP 737 (1176)
T ss_pred hHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 33334443389999999999999886 322222111 1244555556666677788888888888876555 2222222
Q ss_pred hcCChHHHHHHhccchhhHHHHHHHHHHHHhh--hCC----CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhcc
Q 015687 197 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFC--RGK----PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 270 (402)
Q Consensus 197 ~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~--~~~----~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~ 270 (402)
. .|+.++-.+ +..+...++++..+|..++ ... ..+....+..+++.+...+-.+...+....+-++..+..
T Consensus 738 k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~ 814 (1176)
T KOG1248|consen 738 K--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ 814 (1176)
T ss_pred H--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 2 333344344 6678888999999998888 221 222345556677777666554444444443555555543
Q ss_pred CChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHH
Q 015687 271 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 350 (402)
Q Consensus 271 ~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L 350 (402)
...+....-.-.++++.+..+|.+.+..++..|+..+..++..-++..-......++|.+..+++.. .-.+|..+-..|
T Consensus 815 e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~Ll 893 (1176)
T KOG1248|consen 815 EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLLL 893 (1176)
T ss_pred HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHHH
Confidence 3222222222235677788888999999999999999999998776544444446888999988877 778888888888
Q ss_pred HHHhc-CCHHHHHHHHH
Q 015687 351 SNITA-GNVNQIQAIIE 366 (402)
Q Consensus 351 ~nl~~-~~~~~~~~l~~ 366 (402)
--++. ...+.++.+..
T Consensus 894 ekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 894 EKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHhCHHHHHhhCH
Confidence 87776 45666666665
No 136
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.0056 Score=61.61 Aligned_cols=261 Identities=15% Similarity=0.137 Sum_probs=163.3
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhh
Q 015687 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCR 192 (402)
Q Consensus 114 g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~ 192 (402)
+++..|.+.+++.+ ..++-.|+..++.++...|. .+.+ .+|...+.++.- +++.....++-+|+.++..+--.-
T Consensus 341 ~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~---~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPP---ELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcH---HHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 56778888888888 79999999999999987662 2222 356666665553 346677799999999986653222
Q ss_pred HHHHhcCChHHHHHHhcc-------chhhHHHHHHHHHHHHhhhCC-CCCchhhhhchHHHH-HHhccCCChhHHHHHHH
Q 015687 193 DLVLSNGALMPLLAQFNE-------HAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL-ERLIHSNDDEVLTDACW 263 (402)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~-------~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L-~~lL~~~~~~v~~~a~~ 263 (402)
..+.+ +++.++.-+.. .....++..||++++.+.+.. |..-..+...+.+.| ...+.+.+-.++..|..
T Consensus 416 s~l~d--VvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 416 SLLED--VVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHHHH--HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 23222 55556555521 124578999999999999886 332233334444443 34456677888888888
Q ss_pred HHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHH-hcCCCchhH
Q 015687 264 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL-LTQNYKKSI 342 (402)
Q Consensus 264 ~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~l-l~~~~~~~v 342 (402)
++........+. . .| + .|+...+.-.-..+.++...+..-....+.++..+++ .++.. +.+= ++.+
T Consensus 494 AlqE~VGR~~n~-p----~G-i-~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HW-d~~i 560 (1133)
T KOG1943|consen 494 ALQENVGRQGNF-P----HG-I-SLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHW-DVKI 560 (1133)
T ss_pred HHHHHhccCCCC-C----Cc-h-hhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccc-cHHH
Confidence 887655321111 0 01 1 1222222223345566666666666666655554444 23322 4444 7889
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 343 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 343 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
|..++|+|.+|+...|+. ...+++|.|+......+...+.-+..+.+.++.+
T Consensus 561 relaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~ 612 (1133)
T KOG1943|consen 561 RELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGA 612 (1133)
T ss_pred HHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHH
Confidence 999999999987755553 3345788888888888888777666666655543
No 137
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.70 E-value=0.0056 Score=60.44 Aligned_cols=225 Identities=15% Similarity=0.160 Sum_probs=155.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHH
Q 015687 167 SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPAL 246 (402)
Q Consensus 167 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L 246 (402)
.+..+.+.-.+.|+++..+...+.....+. .++...+..+..+..+.++..++.+++..|. +.........++..|
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~L 535 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDGL 535 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccchHHHHHH
Confidence 456677777899999877655333222221 2556666777666777888888888888883 333444556788888
Q ss_pred HHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc--CCCChhhHHHHHHHHHHhhcCChHHHHHHHhC
Q 015687 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--RHPSPSVLIPALRTVGNIVTGDDMQTQCIINH 324 (402)
Q Consensus 247 ~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L--~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~ 324 (402)
.++......++......+|+..+..+++. ....++.++|.++.++ .++++.+...+-.++-.++..... ..-...
T Consensus 536 ~qlas~~s~evl~llmE~Ls~vv~~dpef-~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~--~g~m~e 612 (1005)
T KOG2274|consen 536 LQLASKSSDEVLVLLMEALSSVVKLDPEF-AASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAAN--YGPMQE 612 (1005)
T ss_pred HHHcccccHHHHHHHHHHHHHHhccChhh-hhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh--hcchHH
Confidence 88888888999999999999999887765 3456677888888776 456777777777777666652211 111233
Q ss_pred CChHHHHHHhcCCCc----hhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH-hccCCHHHHHHHHHHHHHhhcCC
Q 015687 325 QALPCLLDLLTQNYK----KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNL-LLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 325 ~~l~~L~~ll~~~~~----~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
..+|.++..|..+ . +.....++-+|.-+..+.|.-+...+-.-++|.+.++ ++++|...-..+..+|..+.+.+
T Consensus 613 ~~iPslisil~~~-~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 613 RLIPSLISVLQLN-ADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHHHHHHHHHcCc-ccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 6799999999877 4 4566667777777777544434443333378888887 46677888888888888887653
No 138
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.69 E-value=0.00025 Score=64.81 Aligned_cols=307 Identities=16% Similarity=0.200 Sum_probs=163.3
Q ss_pred HHHHHhhcC--CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc-----CC
Q 015687 74 PAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS-----GT 146 (402)
Q Consensus 74 ~~l~~~l~s--~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~-----~~ 146 (402)
......+.+ .....+..+...|..++.. .....+....+...+...+...+ +.++..++.++-.+.. ..
T Consensus 256 ~~~~~~~~~~~~ps~~rle~~qvl~~~a~~---~~~~~~~~~~l~RvI~~~~~~~~-p~~~l~~a~ll~~lg~~lv~~~~ 331 (728)
T KOG4535|consen 256 SDAGSAAGSTYEPSPMRLEALQVLTLLARY---FSMTQAYLMELGRVICKCMGEAD-PSIQLHGAKLLEELGTGLIQQYK 331 (728)
T ss_pred hhHHhhhcCccCCchhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHccCCCCC-hHHHHHHHHHHHHHHHHHhhhcC
Confidence 344444443 2345667777777666421 11222222223334444455556 8899999988876643 23
Q ss_pred CcchHHHHhCCchHHHH------Hhh-CCCCHHHHHHHHHHHHHhhCCC----chhhHHHHhcCChHHHHHHhccchhhH
Q 015687 147 SENTRVVIDHGAVPIFV------RLL-SSPTDDVREQAVWALGNVAGDS----PKCRDLVLSNGALMPLLAQFNEHAKLS 215 (402)
Q Consensus 147 ~~~~~~~~~~g~i~~L~------~lL-~~~~~~v~~~a~~~L~nl~~~~----~~~~~~~~~~g~i~~L~~~l~~~~~~~ 215 (402)
|+..+.-...|.+-... ... ++..+..+..++-++.++.... |.-+.. ..+.+..=..++.+.-
T Consensus 332 P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T-----~~~~Fl~GC~d~~~~l 406 (728)
T KOG4535|consen 332 PDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQT-----LCITFLLGCNDSKNRL 406 (728)
T ss_pred CCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchh-----hhHHHHhcccchHHHH
Confidence 33332222222121111 111 2234556677777787775322 111111 1111111122334444
Q ss_pred HHHHHHHHHHHhhhCC-CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccC----Ch---HHHHHHHHhCcHHH
Q 015687 216 MLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG----TN---DKIQAVIEAGVCPR 287 (402)
Q Consensus 216 ~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~----~~---~~~~~~~~~~~i~~ 287 (402)
+...|..++.-+.-+. ..........+...+...+.+..-..+..+.|+++|+++. .+ .....+. .-.+..
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~ 485 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLK 485 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHH
Confidence 5666666666555554 3334455567777777778777888999999999999852 11 1111111 111222
Q ss_pred HHHhc---CCCChhhHHHHHHHHHHhhcCChHHHHHHHhC-------CChHHHHH-HhcCCCchhHHHHHHHHHHHHhcC
Q 015687 288 LVELL---RHPSPSVLIPALRTVGNIVTGDDMQTQCIINH-------QALPCLLD-LLTQNYKKSIKKEACWTISNITAG 356 (402)
Q Consensus 288 L~~~L---~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~-------~~l~~L~~-ll~~~~~~~v~~~a~~~L~nl~~~ 356 (402)
++..- ...+..|+..+.++|||+...- +.+++. +.+..+.. ..-.. ...||-++|++++|+..+
T Consensus 486 ~~~~A~~~~Ad~dkV~~navraLgnllQvl----q~i~~~~~~e~~~~~~~~l~~~v~~~~-~~kV~WNaCya~gNLfkn 560 (728)
T KOG4535|consen 486 MLRSAIEASADKDKVKSNAVRALGNLLQFL----QPIEKPTFAEIIEESIQALISTVLTEA-AMKVRWNACYAMGNLFKN 560 (728)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhHHHHH----HHhhhccHHHHHHHHHHhcccceeccc-ccccchHHHHHHHHhhcC
Confidence 22221 2345789999999999997532 222222 11111211 12223 678999999999999985
Q ss_pred CHHHHHHH-HHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHh
Q 015687 357 NVNQIQAI-IEAGIIGPLVNLLLN-AEFEIKKEAAWAISNA 395 (402)
Q Consensus 357 ~~~~~~~l-~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl 395 (402)
..-..+.. ...-+++.|..++.+ .+++||..|+.+|.--
T Consensus 561 ~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp 601 (728)
T KOG4535|consen 561 PALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVP 601 (728)
T ss_pred ccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCC
Confidence 21101110 122357788888765 7899999999988643
No 139
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.64 E-value=0.0073 Score=57.36 Aligned_cols=232 Identities=14% Similarity=0.117 Sum_probs=153.8
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCC-----CCHHHHHHHHHHHHHhhcCCCcchHHHHh
Q 015687 81 WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-----DFPQLQFEAAWALTNIASGTSENTRVVID 155 (402)
Q Consensus 81 ~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 155 (402)
.+.++.....|+++|++++-.. ....+.+.+.|..+.+++.|+.. + .++.+...++|.-++..+++.+..+++
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl~~RLLFLlTa~~~~~~~~L~~ 119 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFLDSRLLFLLTALRPDDRKKLIE 119 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHHHHHHHHHHhcCChhHHHHHHH
Confidence 4567899999999999998754 44556788999999999999876 4 788999999998888877888777666
Q ss_pred C-CchHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccc------
Q 015687 156 H-GAVPIFVRLLSS-----------------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH------ 211 (402)
Q Consensus 156 ~-g~i~~L~~lL~~-----------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~------ 211 (402)
. +++..+...|.. .+......++.++.|+....+.... -...+.++.++.++...
T Consensus 120 e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~ 198 (446)
T PF10165_consen 120 EHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPS 198 (446)
T ss_pred HhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCC
Confidence 4 777777775521 1445677888999999876654322 12233555555554221
Q ss_pred --hhhHHHHHHHHHHHHhhhCC------------CCCchhhhhchHHHHHHhcc----C-C---ChhHHHHHHHHHHHhc
Q 015687 212 --AKLSMLRNATWTLSNFCRGK------------PQPLFEQTRPALPALERLIH----S-N---DDEVLTDACWALSYLS 269 (402)
Q Consensus 212 --~~~~~~~~a~~~L~~l~~~~------------~~~~~~~~~~~l~~L~~lL~----~-~---~~~v~~~a~~~l~~l~ 269 (402)
+......++.-+|.|+--.. ...........+..|+.+|. . . -.+.....+.+|..++
T Consensus 199 ~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~ 278 (446)
T PF10165_consen 199 SPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLA 278 (446)
T ss_pred CCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHH
Confidence 23456777777777772110 00001111334455555542 1 1 2467888889999998
Q ss_pred cCChHHHHHHHH----------------hCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 015687 270 DGTNDKIQAVIE----------------AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 315 (402)
Q Consensus 270 ~~~~~~~~~~~~----------------~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~ 315 (402)
.......+.+.. ..+-.+|+.++.+..+.++..+...+-.+|..+.
T Consensus 279 ~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 279 RAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred HhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence 776554444422 2355678888888888888888888888875443
No 140
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.63 E-value=0.0048 Score=55.79 Aligned_cols=204 Identities=11% Similarity=0.128 Sum_probs=145.5
Q ss_pred HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCc----hhhhhchHHHHHHhc--cCCChhHHHHHHHHHH
Q 015687 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL----FEQTRPALPALERLI--HSNDDEVLTDACWALS 266 (402)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~l~~L~~lL--~~~~~~v~~~a~~~l~ 266 (402)
..+...+.+..|+..| ..-+-+.+..++..+.++.+...... ......--|-++..| ..+++++...+-..|.
T Consensus 70 ~Ei~~~dll~~Li~~L-~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlR 148 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNL-PKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLR 148 (335)
T ss_dssp HHHHHHTHHHHHHHTG-GGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHh-hhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHH
Confidence 3455667888888888 77788899999999999999873332 222322212222222 2246666666666777
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhC---CChHHHHHHhcCCCchhHH
Q 015687 267 YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH---QALPCLLDLLTQNYKKSIK 343 (402)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~---~~l~~L~~ll~~~~~~~v~ 343 (402)
.++.+ +.....++....+..+..++..++-++...|..++..+.+.........+.. .++.....+|.++ +.-+|
T Consensus 149 ec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYvtk 226 (335)
T PF08569_consen 149 ECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYVTK 226 (335)
T ss_dssp HHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHHHH
T ss_pred HHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeEee
Confidence 76655 4456778888899999999999999999999999999888777666666654 4567888899998 99999
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 344 KEACWTISNITAG--NVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 344 ~~a~~~L~nl~~~--~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
+.+...|+.|... +.......+ +..-+..++.+|.+....+|-+|..+.--++...
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 9999999999863 444444444 4556889999999999999999998877666543
No 141
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.61 E-value=0.0076 Score=54.21 Aligned_cols=191 Identities=17% Similarity=0.228 Sum_probs=126.3
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHh---hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcC--C
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI---QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG--T 146 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~---~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~--~ 146 (402)
.+...+..+.......+..++..+.+++... ....++ ...++..+.+.++.+. .+-+..|+.+++-++-. .
T Consensus 44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~---~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~ 119 (309)
T PF05004_consen 44 KLKEAIDLLTEKSSSTREAALEALIRALSSR---YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGA 119 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCC
Confidence 3677788888777899999999999998653 222333 2336778888888887 56677787777766543 3
Q ss_pred CcchHHHHhCCchHHHHHhhCCC--CHHHHHHHHHHHHHhhC---CCchhhHHHHhcCChHHHH--HHhcc---------
Q 015687 147 SENTRVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAG---DSPKCRDLVLSNGALMPLL--AQFNE--------- 210 (402)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~---~~~~~~~~~~~~g~i~~L~--~~l~~--------- 210 (402)
......+++ ...|.|.+.+.+. ...+|..++.+|+-++. ..+......++ .+..+. .....
T Consensus 120 g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~ 196 (309)
T PF05004_consen 120 GEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAA 196 (309)
T ss_pred CccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccC
Confidence 344555665 5788999988764 45677777777776643 22221111111 222111 11211
Q ss_pred chhhHHHHHHHHHHHHhhhCCCCCch-hhhhchHHHHHHhccCCChhHHHHHHHHHHHhc
Q 015687 211 HAKLSMLRNATWTLSNFCRGKPQPLF-EQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (402)
Q Consensus 211 ~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~ 269 (402)
.+++.+...|+.+++-|...-|.... ......+|.|..+|.++|.+|+..|-.+|+-|.
T Consensus 197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 197 EDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred CCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 12456888888888877766544322 334778999999999999999999999888775
No 142
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.60 E-value=0.0006 Score=67.07 Aligned_cols=188 Identities=19% Similarity=0.171 Sum_probs=129.0
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh-------------hHHHHhcCChHHHHHHhccchhhHHHHHHHHHH
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC-------------RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL 224 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-------------~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L 224 (402)
+...|+.+|++ +++-..+..++.-+..|++.. |+.+. ..++|.++..+ ...+...+.+...+|
T Consensus 816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~-~t~~~~~K~~yl~~L 891 (1030)
T KOG1967|consen 816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKF-ETAPGSQKHNYLEAL 891 (1030)
T ss_pred HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHh-ccCCccchhHHHHHH
Confidence 44556666664 344455666666666655432 23332 23677888877 456667788889999
Q ss_pred HHhhhCCCCCc-hhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC---hhhH
Q 015687 225 SNFCRGKPQPL-FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS---PSVL 300 (402)
Q Consensus 225 ~~l~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~---~~v~ 300 (402)
++...+-|... ......++|.|++.|.-+|..++..++.++.-+....+.....-++ -++|.++.+=.+.+ ..+|
T Consensus 892 shVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR 970 (1030)
T KOG1967|consen 892 SHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVR 970 (1030)
T ss_pred HHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHH
Confidence 99888755433 2344778899999999999999999999998877554433222222 35666666655444 5799
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 015687 301 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (402)
Q Consensus 301 ~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 351 (402)
..|+.+++.+....|...-......++..|.+.|+++ +.-||++|+.+=.
T Consensus 971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQ 1020 (1030)
T ss_pred HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhh
Confidence 9999999999985554333344456778899999998 8899999986644
No 143
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.0068 Score=63.11 Aligned_cols=223 Identities=17% Similarity=0.189 Sum_probs=136.6
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHH
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (402)
.|-.|+++-+++-...-+..|+.-++.|+....+..+.... ..||.|.++=.+++..|+..-......|..|+....+.
T Consensus 957 LVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~-kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~ 1035 (1702)
T KOG0915|consen 957 LVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLK-KLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDE 1035 (1702)
T ss_pred HHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHH-HhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHH
Confidence 46666666665543455777888888888754333333332 47899999888999999977777667777775554444
Q ss_pred HHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCch-hhhhchHHHHHHhccCCChhHHHH---HHHHHHHhcc
Q 015687 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF-EQTRPALPALERLIHSNDDEVLTD---ACWALSYLSD 270 (402)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~L~~lL~~~~~~v~~~---a~~~l~~l~~ 270 (402)
... .+++.|+.-+ .+..-.+++.+|.+|..|.++.|.... ..+..+...+...+.+-.+.|+.. ++.+++.++.
T Consensus 1036 y~n-eIl~eLL~~l-t~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~v 1113 (1702)
T KOG0915|consen 1036 YLN-EILDELLVNL-TSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCV 1113 (1702)
T ss_pred HHH-HHHHHHHHhc-cchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 433 2666666666 667788999999999999998654332 223444445555554444556554 4566666552
Q ss_pred CChHHHHHHHHhCcHHHHHHhc-----CCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhH
Q 015687 271 GTNDKIQAVIEAGVCPRLVELL-----RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSI 342 (402)
Q Consensus 271 ~~~~~~~~~~~~~~i~~L~~~L-----~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v 342 (402)
..-+...-.-...++..++++| -+.-+.+|..++.++..++.......... -..++|.|+...+.- .+.+
T Consensus 1114 r~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~-~~~LIp~ll~~~s~l-E~~v 1188 (1702)
T KOG0915|consen 1114 RICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPH-FPKLIPLLLNAYSEL-EPQV 1188 (1702)
T ss_pred hhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcch-hhHHHHHHHHHcccc-chHH
Confidence 1110001011112334444443 24557899999999999987666433322 225677777777665 4443
No 144
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.56 E-value=0.021 Score=48.66 Aligned_cols=224 Identities=18% Similarity=0.273 Sum_probs=143.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhcCCCcchH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
+..+-+....+........+.+|.++- ....+|.|+..|...+ .+.++.+|+.+|+.+.. +
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~------------~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--~---- 99 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQ------------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---- 99 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhc------------cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h----
Confidence 444444444444444555566655542 2346899998887543 37889999999999873 2
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCC---------------CchhhHHHHhcCChHHHHHHhccchhhHH
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD---------------SPKCRDLVLSNGALMPLLAQFNEHAKLSM 216 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~---------------~~~~~~~~~~~g~i~~L~~~l~~~~~~~~ 216 (402)
+..+.+-++.+++-..+++.+..++..+--. +|... ...+-+..+-..|.+.+.+..
T Consensus 100 -----~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l~ 171 (289)
T KOG0567|consen 100 -----ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPP---ANLSSVHELRAELLDETKPLF 171 (289)
T ss_pred -----hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCc---cccccHHHHHHHHHhcchhHH
Confidence 4677888888888888888888888776311 11111 111123334333323322222
Q ss_pred -HHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC--
Q 015687 217 -LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-- 293 (402)
Q Consensus 217 -~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~-- 293 (402)
+..+.+.|.|+-. ...+..+..-+..++.-.+..+..+++.|-.. -.++.|.+.|.
T Consensus 172 ~Ry~amF~LRn~g~----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~-----------~ai~~L~k~L~d~ 230 (289)
T KOG0567|consen 172 ERYRAMFYLRNIGT----------EEAINALIDGLADDSALFRHEVAFVFGQLQSP-----------AAIPSLIKVLLDE 230 (289)
T ss_pred HHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHHHHHHHHhhccch-----------hhhHHHHHHHHhh
Confidence 3345555555432 25577788888888888899999888877432 23567777764
Q ss_pred CCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 294 ~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
.+.+-+|..|+.+||.++. + ..++.|.+.+.+. .+-|++.+..+|..+-.
T Consensus 231 ~E~pMVRhEaAeALGaIa~--e---------~~~~vL~e~~~D~-~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 231 TEHPMVRHEAAEALGAIAD--E---------DCVEVLKEYLGDE-ERVVRESCEVALDMLEY 280 (289)
T ss_pred hcchHHHHHHHHHHHhhcC--H---------HHHHHHHHHcCCc-HHHHHHHHHHHHHHHHH
Confidence 3467899999999999974 2 3356788888887 88888888887775543
No 145
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.52 E-value=0.0088 Score=49.26 Aligned_cols=93 Identities=24% Similarity=0.295 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc
Q 015687 213 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 292 (402)
Q Consensus 213 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L 292 (402)
++.++.+++-+++-||...| ..+.+.+|.+...|.++++.|+..|+.++..|...+.-... ..++..++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHHH
Confidence 46788999999999997754 34467889999999999999999999999999865432221 22347788888
Q ss_pred CCCChhhHHHHHHHHHHhhcC
Q 015687 293 RHPSPSVLIPALRTVGNIVTG 313 (402)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~ 313 (402)
.++++.++..|..++..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999876
No 146
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0029 Score=59.28 Aligned_cols=130 Identities=15% Similarity=0.233 Sum_probs=95.5
Q ss_pred HHHHhccCCChhHHHHHHHHHHH--hccCChHHHHHHHHhCcHHHHHHh-cCCCChhhHHHHHHHHHHhhcCChHHHHHH
Q 015687 245 ALERLIHSNDDEVLTDACWALSY--LSDGTNDKIQAVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCI 321 (402)
Q Consensus 245 ~L~~lL~~~~~~v~~~a~~~l~~--l~~~~~~~~~~~~~~~~i~~L~~~-L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i 321 (402)
.+.+++.+.|+-++.....+++. ...+. .|++..++.+ .++.+.+|+..|..+||-+|....
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn---------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~------ 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTGN---------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR------ 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCCc---------chhHhhhheeecccCchHHHHHHHHheeeeEecCc------
Confidence 56677777788888777665543 22222 2566777777 677888999999999999987654
Q ss_pred HhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 322 INHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 322 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
..++..+++|..++++.||...+.+|+-.|+++..+. .+..|-.++.+...-||+.|+.+++-+....
T Consensus 585 ---~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~ 652 (926)
T COG5116 585 ---DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQC 652 (926)
T ss_pred ---chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhc
Confidence 5677788888777799999999999998888654432 2344555667777889999999988776544
No 147
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.48 E-value=0.0044 Score=61.68 Aligned_cols=271 Identities=15% Similarity=0.125 Sum_probs=177.6
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhh
Q 015687 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (402)
Q Consensus 113 ~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (402)
....+..-++.++.. +.++..++.-+++++..-.. .....+.++.+.++..+....+++.|...+.++...-..-
T Consensus 236 ~elr~~~~~lc~d~~-~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~- 310 (759)
T KOG0211|consen 236 RELRPIVQSLCQDDT-PMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDD- 310 (759)
T ss_pred HHHHHHHHhhccccc-hhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCc-
Confidence 334455555666665 88899999999888875332 6667789999999999999999999999999987543211
Q ss_pred HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCC
Q 015687 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (402)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~ 272 (402)
+. ....+.+.+++.. .+.+..+........+.++..-.. ........+....++.+...+.+..+..-...++...
T Consensus 311 ~d-~~~~~~~~l~~~~-~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l 386 (759)
T KOG0211|consen 311 DD-VVKSLTESLVQAV-EDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYL 386 (759)
T ss_pred hh-hhhhhhHHHHHHh-cChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhc
Confidence 01 1223566777777 667777777777777777665322 2222455677777777777777777666555555322
Q ss_pred h-HHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 015687 273 N-DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (402)
Q Consensus 273 ~-~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 351 (402)
. +....+....+++.+..+..+.+..++...+..+..+..-.+ ...- -...+|.+...+++. .+.|+....|.++
T Consensus 387 ~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~t-i~~llp~~~~~l~de-~~~V~lnli~~ls 462 (759)
T KOG0211|consen 387 NASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERT-ISELLPLLIGNLKDE-DPIVRLNLIDKLS 462 (759)
T ss_pred CcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcC-ccccChhhhhhcchh-hHHHHHhhHHHHH
Confidence 1 112234455667888888888899999888777777654333 0001 125677788888877 8899999998887
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 015687 352 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 352 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 396 (402)
.+-......-........+|.+..+-.+....++.+..+.+--++
T Consensus 463 ~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la 507 (759)
T KOG0211|consen 463 LLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLA 507 (759)
T ss_pred HHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHH
Confidence 665532222222333446777777766666777777777665554
No 148
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.03 Score=57.24 Aligned_cols=220 Identities=11% Similarity=0.121 Sum_probs=140.4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhc---cchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHH
Q 015687 168 SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 244 (402)
Q Consensus 168 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~ 244 (402)
+.+..++..+...|..++...+ ......+ .+..+.+.+. +..+...+...+.+|..|....+......+...+|
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s-~~~~~~q--~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~ 741 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPS-GEGLVEQ--RIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIP 741 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCc-hhhHHHH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3578899999999999987732 2111111 2333333332 44566778888888888887766555556666666
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhC------cHHHHHHhc----CCCChhhHHHHHHHHHHhhcCC
Q 015687 245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG------VCPRLVELL----RHPSPSVLIPALRTVGNIVTGD 314 (402)
Q Consensus 245 ~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~------~i~~L~~~L----~~~~~~v~~~a~~~l~nl~~~~ 314 (402)
-++=.+.+.|...+..+..+|..++. ++...+.| .+...+..+ -.+...+....+.+++.+....
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~ 816 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEF 816 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 65555577888899999998888873 12222222 333344433 3333333333366666666533
Q ss_pred hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHH
Q 015687 315 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394 (402)
Q Consensus 315 ~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~n 394 (402)
........-.++++.+..+|.+. ++++++.|+..+.-++...|+.+-.--...++|.+..++++..-+++..+-..|-.
T Consensus 817 ~~~ld~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Llek 895 (1176)
T KOG1248|consen 817 KNILDDETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEK 895 (1176)
T ss_pred hccccHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 32222222236677788888888 99999999999999988655543333333489999999988888888887777665
Q ss_pred hh
Q 015687 395 AT 396 (402)
Q Consensus 395 l~ 396 (402)
++
T Consensus 896 Li 897 (1176)
T KOG1248|consen 896 LI 897 (1176)
T ss_pred HH
Confidence 54
No 149
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.44 E-value=0.0061 Score=59.50 Aligned_cols=202 Identities=16% Similarity=0.117 Sum_probs=143.1
Q ss_pred hhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCC-hhHHHHHHHHHHHhc
Q 015687 191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND-DEVLTDACWALSYLS 269 (402)
Q Consensus 191 ~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~~l~~l~ 269 (402)
-+...++.|+...|+.+. ..+.+........+|. . .-.-........++.+...++... ..-...++.++.||+
T Consensus 496 ~~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~--~--~i~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLa 570 (748)
T KOG4151|consen 496 ERAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALA--G--KIDFPGERSYEVVKPLDSALHNDEKGLENFEALEALTNLA 570 (748)
T ss_pred hcCccccccHHHHHHHHH-HHhchHHHHHHHHHHh--h--hcCCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhccc
Confidence 466778899999999998 4455566666666666 1 111111222344555555554332 223467888999999
Q ss_pred cCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhC-CChHHHHHHhcCCCchhHHHHHHH
Q 015687 270 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH-QALPCLLDLLTQNYKKSIKKEACW 348 (402)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~-~~l~~L~~ll~~~~~~~v~~~a~~ 348 (402)
..++...+.++..-.++.+-.++..+++..+..++..+.|+..++.-+...+.+. ..++.....+... +......++.
T Consensus 571 s~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a~ 649 (748)
T KOG4151|consen 571 SISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGAG 649 (748)
T ss_pred CcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhccc
Confidence 8777666778887777888888888999999999999999999888777777773 5567777777665 7777777887
Q ss_pred HHHHHhcCCHHHHHHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 349 TISNITAGNVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 349 ~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
++..|+.-...++.... -......+..++.++++.++...+..+.|+...
T Consensus 650 a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~ 700 (748)
T KOG4151|consen 650 ALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEA 700 (748)
T ss_pred cccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHH
Confidence 77777765555555322 245678889999999999999988888885543
No 150
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.41 E-value=0.0037 Score=57.45 Aligned_cols=264 Identities=15% Similarity=0.112 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhh-----CCCchhhHHHHhcCChHHH
Q 015687 130 QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA-----GDSPKCRDLVLSNGALMPL 204 (402)
Q Consensus 130 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~-----~~~~~~~~~~~~~g~i~~L 204 (402)
.++.+++.+|..++.+-.-.+..++ .....+..-+.+..+.++..+..++..+- .+.|+.-+.-...|.+-.+
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~--~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~ 347 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLM--ELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM 347 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence 5777788888777764222222222 23344444556678888888888877664 2333221111122211111
Q ss_pred ------HHHhccchhhHHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHH
Q 015687 205 ------LAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 277 (402)
Q Consensus 205 ------~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~ 277 (402)
-....++..+..+...|.+++++.... ..-+-..-...+-.+..+-.+.+.-++..|.+++.-+.-++.-...
T Consensus 348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d 427 (728)
T KOG4535|consen 348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQD 427 (728)
T ss_pred HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhh
Confidence 112223345667778888888886543 1111100011111222222233444777888888776655554444
Q ss_pred HHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhc----CCh---HHHHHHHhCCChHHHHHHhc--CCCchhHHHHHHH
Q 015687 278 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT----GDD---MQTQCIINHQALPCLLDLLT--QNYKKSIKKEACW 348 (402)
Q Consensus 278 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~----~~~---~~~~~i~~~~~l~~L~~ll~--~~~~~~v~~~a~~ 348 (402)
...-..+...+...+.+..-..+..+.|++|||.. +.+ .....+.. -.+..++..-. +..+..|+..++.
T Consensus 428 ~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navr 506 (728)
T KOG4535|consen 428 VIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVR 506 (728)
T ss_pred HHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 44444556667777777777899999999999974 222 12332222 12222332221 2225789999999
Q ss_pred HHHHHhcCCHHHHHHHHHc-------C-CHHHHHHHhccCCHHHHHHHHHHHHHhhcCCC
Q 015687 349 TISNITAGNVNQIQAIIEA-------G-IIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 349 ~L~nl~~~~~~~~~~l~~~-------~-~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 400 (402)
+|+|+..- .+.+.+. | ....+-.....+..+||=+||++++|+..+-+
T Consensus 507 aLgnllQv----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a 562 (728)
T KOG4535|consen 507 ALGNLLQF----LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPA 562 (728)
T ss_pred HHhhHHHH----HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcc
Confidence 99998642 2222222 1 12222222334678999999999999987653
No 151
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.39 E-value=0.056 Score=51.93 Aligned_cols=176 Identities=15% Similarity=0.140 Sum_probs=105.3
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHH
Q 015687 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL 196 (402)
Q Consensus 117 ~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 196 (402)
..++...+ ++ ...+..|+..|......-|+..+. ++..++.|.++++..||.+|+..|..+|.+.++....
T Consensus 26 ~~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-- 96 (556)
T PF05918_consen 26 KEILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-- 96 (556)
T ss_dssp HHHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH--
T ss_pred HHHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH--
Confidence 34444444 34 688999999999988877776654 6788999999999999999999999999998765444
Q ss_pred hcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhcc---CCChhHHHHHHHHHHH-hccCC
Q 015687 197 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---SNDDEVLTDACWALSY-LSDGT 272 (402)
Q Consensus 197 ~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~---~~~~~v~~~a~~~l~~-l~~~~ 272 (402)
+.+.|+++| +..++.-...+-.+|..|...+| .+.+..+...+. +.|+.+++.++..|.. +-.-.
T Consensus 97 ---vaDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 97 ---VADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp ---HHHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred ---HHHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence 466788888 66777777777788877776643 344444444443 5678889998876643 32211
Q ss_pred hHHHH--HHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 015687 273 NDKIQ--AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 273 ~~~~~--~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
.+... .=.+.-++..+...|.+-...--...+.+|..+-.
T Consensus 166 ~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~ 207 (556)
T PF05918_consen 166 PELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKI 207 (556)
T ss_dssp TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred HHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence 11111 11222345566667765443334444555555544
No 152
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.0093 Score=58.68 Aligned_cols=224 Identities=13% Similarity=0.167 Sum_probs=143.8
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhh
Q 015687 161 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTR 240 (402)
Q Consensus 161 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 240 (402)
.-+..+.++-..++-.++..|..++.... ....+...+++...+..+ .+.|+-+.-+|...+..||...| .
T Consensus 731 eai~sl~d~qvpik~~gL~~l~~l~e~r~-~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy~-------e 801 (982)
T KOG4653|consen 731 EAISSLHDDQVPIKGYGLQMLRHLIEKRK-KATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVYP-------E 801 (982)
T ss_pred HHHHHhcCCcccchHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhcc-------h
Confidence 33444556677789999999999997553 346777788899999999 78888888999999999997744 4
Q ss_pred chHHHHHH-hccCCC---hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChH
Q 015687 241 PALPALER-LIHSND---DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 316 (402)
Q Consensus 241 ~~l~~L~~-lL~~~~---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~ 316 (402)
.++|-+.. ..+..+ ++.+-.+-.++.++...-.+......+ -++...+....+++...|..++..+|++|.-.+.
T Consensus 802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~ 880 (982)
T KOG4653|consen 802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAF 880 (982)
T ss_pred hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh
Confidence 55666655 332221 222333334455544332222222222 3455566667777888899999999999976553
Q ss_pred HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---cCCHHHHHHHhcc-CCHHHHHHHHHHH
Q 015687 317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLLLN-AEFEIKKEAAWAI 392 (402)
Q Consensus 317 ~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~~-~~~~v~~~a~~aL 392 (402)
+....+. .++..++.+...+..+-+|+.|+..+..+..+.....-.+.. .+....+...... ++..++..|+.++
T Consensus 881 ~vsd~~~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 881 QVSDFFH-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL 959 (982)
T ss_pred hhhHHHH-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 3333222 345566666665557899999999999998876655555442 2233444444444 4456777777776
Q ss_pred HHh
Q 015687 393 SNA 395 (402)
Q Consensus 393 ~nl 395 (402)
--+
T Consensus 960 eei 962 (982)
T KOG4653|consen 960 EEI 962 (982)
T ss_pred HHH
Confidence 544
No 153
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.042 Score=53.54 Aligned_cols=218 Identities=15% Similarity=0.108 Sum_probs=116.1
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhh
Q 015687 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 238 (402)
Q Consensus 159 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 238 (402)
|..+..+|.++++.++-.|+.+|.+++.+....+. +...++.++.+.+|..+.-....-|..+.. .....
T Consensus 245 i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~------Aa~~~i~l~~kesdnnvklIvldrl~~l~~----~~~~i 314 (948)
T KOG1058|consen 245 IRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKA------AASTYIDLLVKESDNNVKLIVLDRLSELKA----LHEKI 314 (948)
T ss_pred HHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHH------HHHHHHHHHHhccCcchhhhhHHHHHHHhh----hhHHH
Confidence 44444555555555555555555555444332211 223344444333333333333333333331 11223
Q ss_pred hhchHHHHHHhccCCChhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 015687 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 317 (402)
Q Consensus 239 ~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~ 317 (402)
..+.+--++.+|.++|-+++..++.....|+.... +.+-.++...+...--. =...+...|..-++++..++..-++.
T Consensus 315 l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~Fp~~ 393 (948)
T KOG1058|consen 315 LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKFPEV 393 (948)
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcChHH
Confidence 34555567788899999999999988877765432 22111221111111000 01224567888888998888877765
Q ss_pred HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHhh
Q 015687 318 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNAT 396 (402)
Q Consensus 318 ~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~ 396 (402)
.. .+++.++..+.+. ++..-......+.......|.-+.. ++..|++.+.. ...++...|+|.++.-+
T Consensus 394 aa-----tvV~~ll~fisD~-N~~aas~vl~FvrE~iek~p~Lr~~-----ii~~l~~~~~~irS~ki~rgalwi~GeYc 462 (948)
T KOG1058|consen 394 AA-----TVVSLLLDFISDS-NEAAASDVLMFVREAIEKFPNLRAS-----IIEKLLETFPQIRSSKICRGALWILGEYC 462 (948)
T ss_pred HH-----HHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhCchHHHH-----HHHHHHHhhhhhcccccchhHHHHHHHHH
Confidence 55 5677899999887 6654444444444333333333322 44455555533 55678888888888766
Q ss_pred cC
Q 015687 397 SG 398 (402)
Q Consensus 397 ~~ 398 (402)
.+
T Consensus 463 e~ 464 (948)
T KOG1058|consen 463 EG 464 (948)
T ss_pred hh
Confidence 54
No 154
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.33 E-value=0.013 Score=57.40 Aligned_cols=248 Identities=15% Similarity=0.079 Sum_probs=164.3
Q ss_pred hhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHH-HhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHH
Q 015687 142 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG-NVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNA 220 (402)
Q Consensus 142 l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~-nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a 220 (402)
++.....-+...++.|+...|+.+.....+..+-....+|. .+...+.. ....++++.+.+.+...-.-....
T Consensus 489 ~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~ 562 (748)
T KOG4151|consen 489 LAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEA 562 (748)
T ss_pred HhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHH
Confidence 34334555666788899999999988777777777777777 33222211 122566666666333333334567
Q ss_pred HHHHHHhhhCCCCCchhhh-hchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHhcCCCChh
Q 015687 221 TWTLSNFCRGKPQPLFEQT-RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLRHPSPS 298 (402)
Q Consensus 221 ~~~L~~l~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~L~~~L~~~~~~ 298 (402)
+.++.||+........... ...++.+-.++..+++..+..++..+.||.-++.-....+++ ...++.....+......
T Consensus 563 L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~ 642 (748)
T KOG4151|consen 563 LEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEK 642 (748)
T ss_pred HHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhH
Confidence 7888888877633333333 445555666777888999999999999999776655455555 23455555566666666
Q ss_pred hHHHHHHHHHHhhcCChHHHH-HHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh
Q 015687 299 VLIPALRTVGNIVTGDDMQTQ-CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 377 (402)
Q Consensus 299 v~~~a~~~l~nl~~~~~~~~~-~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 377 (402)
...+++.++..|......... ..-.......+..++.+. ++.++......+.|+.....+....++....++.+...-
T Consensus 643 ~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~ 721 (748)
T KOG4151|consen 643 FELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQ 721 (748)
T ss_pred HhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHH
Confidence 777777777766655443333 222336778889999998 999999999999997766777777777777887777765
Q ss_pred ccCCHHHHHHHHHHHHHhh
Q 015687 378 LNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 378 ~~~~~~v~~~a~~aL~nl~ 396 (402)
.-.....+..+.-+|..+.
T Consensus 722 ~~~~a~~~~~~~~~l~~a~ 740 (748)
T KOG4151|consen 722 KLNRAPKREDAAPCLSAAE 740 (748)
T ss_pred HhhhhhhhhhhhhHHHHHH
Confidence 4444555555655555443
No 155
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.30 E-value=0.02 Score=54.01 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=47.4
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 78 AGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 78 ~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
..+.+....+++.+++.++.+.... ....+++ ..+..|-.+|.++. ...|+.|+++|..++-..|+.
T Consensus 271 ~wls~k~emV~lE~Ar~v~~~~~~n---v~~~~~~-~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~k 337 (898)
T COG5240 271 SWLSDKFEMVFLEAARAVCALSEEN---VGSQFVD-QTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQK 337 (898)
T ss_pred HHhcCcchhhhHHHHHHHHHHHHhc---cCHHHHH-HHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCce
Confidence 4555566788888998888874321 1222222 24777888888888 799999999999999866653
No 156
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.29 E-value=0.029 Score=50.47 Aligned_cols=190 Identities=17% Similarity=0.189 Sum_probs=114.2
Q ss_pred HHHHhccchhhHHHHHHHHHHHHhhhCCCCCchh--hhhchHHHHHHhccCCChhHHHHHHHHHHHhccC--ChHHHHHH
Q 015687 204 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE--QTRPALPALERLIHSNDDEVLTDACWALSYLSDG--TNDKIQAV 279 (402)
Q Consensus 204 L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~--~~~~~~~~ 279 (402)
.+..+ .......+..++..+.++........+. ....+++.+.+.++.+..+-+..++.++.-++-. .......+
T Consensus 48 ~Id~l-~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 48 AIDLL-TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHH-HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 33444 3445778888888888888776433332 2255677888888877766666777777766533 22223334
Q ss_pred HHhCcHHHHHHhcCCCC--hhhHHHHHHHHHHhhcC---ChHHHHHHHhCCChHHHH--HHhcCC---------CchhHH
Q 015687 280 IEAGVCPRLVELLRHPS--PSVLIPALRTVGNIVTG---DDMQTQCIINHQALPCLL--DLLTQN---------YKKSIK 343 (402)
Q Consensus 280 ~~~~~i~~L~~~L~~~~--~~v~~~a~~~l~nl~~~---~~~~~~~i~~~~~l~~L~--~ll~~~---------~~~~v~ 343 (402)
++ .+.+.|...+.+.. ..+|..++.+|+-++.. ..+.....++ .+..+. ...+.. .++.+.
T Consensus 127 ~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 127 FE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 43 35678888876543 45667777788777542 2222221111 222111 112211 134577
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 344 KEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 344 ~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
..|+.+-+-|... .+..+....+. .+|.|..+|.+.+.+||..|..+|.-|...
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~~~-~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLLEE-ALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 6665444544442 33345544443 689999999999999999999999877543
No 157
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.29 E-value=0.016 Score=47.64 Aligned_cols=92 Identities=15% Similarity=0.192 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcC-ChHHHHHH
Q 015687 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG-ALMPLLAQ 207 (402)
Q Consensus 129 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g-~i~~L~~~ 207 (402)
+.++..++.+++.++...+.. ++ ..+|.+...|.++++.+|..|+.+|.+|...+. +.-.| .+..++..
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~----ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNL----VE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHH----HH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHH
Confidence 788999999999988754432 22 468899999999999999999999999985532 11122 33677777
Q ss_pred hccchhhHHHHHHHHHHHHhhhCC
Q 015687 208 FNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 208 l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
+ .+++++++..|..++..+....
T Consensus 72 l-~D~~~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 72 L-VDENPEIRSLARSFFSELLKKR 94 (178)
T ss_pred H-cCCCHHHHHHHHHHHHHHHHhc
Confidence 7 8889999999999999999873
No 158
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.29 E-value=0.019 Score=52.74 Aligned_cols=175 Identities=14% Similarity=0.199 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHH-hhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHh
Q 015687 171 DDVREQAVWALGN-VAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL 249 (402)
Q Consensus 171 ~~v~~~a~~~L~n-l~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~l 249 (402)
.+-+..|+.-|.. ++.++...-...+ ..++..+++.|.++.+...+.-|+..|..+|.+.+..-+....-++..+++.
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA 379 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence 3444555553333 3444333222222 1256677888866688899999999999999997776666666677777777
Q ss_pred ccCCChhHHHHHHHH-HHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChH
Q 015687 250 IHSNDDEVLTDACWA-LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALP 328 (402)
Q Consensus 250 L~~~~~~v~~~a~~~-l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~ 328 (402)
-.+.++++...|... +.-++.+.+.. .+.-+..++...+......++..+..++..-+...-..+-..+.|
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP 451 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAP 451 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhh
Confidence 777766665555443 33444554432 133444555457777777888888888875442222223348899
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 329 CLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 329 ~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
.+++-..+. +..||+.|++||..+..
T Consensus 452 ~~iqay~S~-SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 452 CVIQAYDST-SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence 999999999 99999999999998875
No 159
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.28 E-value=0.092 Score=50.52 Aligned_cols=290 Identities=14% Similarity=0.158 Sum_probs=154.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
....++...+. +......|+..+.++...- |... ..++..+++++.+.+ ..+|..|+..|-.+|.+++++..
T Consensus 24 ~y~~il~~~kg-~~k~K~Laaq~I~kffk~F--P~l~----~~Ai~a~~DLcEDed-~~iR~~aik~lp~~ck~~~~~v~ 95 (556)
T PF05918_consen 24 DYKEILDGVKG-SPKEKRLAAQFIPKFFKHF--PDLQ----EEAINAQLDLCEDED-VQIRKQAIKGLPQLCKDNPEHVS 95 (556)
T ss_dssp HHHHHHHGGGS--HHHHHHHHHHHHHHHCC---GGGH----HHHHHHHHHHHT-SS-HHHHHHHHHHGGGG--T--T-HH
T ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHHHhhC--hhhH----HHHHHHHHHHHhccc-HHHHHHHHHhHHHHHHhHHHHHh
Confidence 45677777764 6888889999999987532 3222 225889999999998 89999999999999998887776
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhc--cchhhHHHHHHHHHHHHhhh
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN--EHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~--~~~~~~~~~~a~~~L~~l~~ 229 (402)
. ++..|+++|.++++.-...+-.+|..+...++.. .+..+...+. ...+..++..++.+|..=..
T Consensus 96 k-----vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~ 162 (556)
T PF05918_consen 96 K-----VADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLREKLK 162 (556)
T ss_dssp H-----HHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHHHGG
T ss_pred H-----HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHHHHh
Confidence 5 4678999999988888888888888886555432 3445555552 24567788888877653333
Q ss_pred CC-C---CCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhcc----CChHHHHHHHHhCcHHHHHHh------cCCC
Q 015687 230 GK-P---QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLVEL------LRHP 295 (402)
Q Consensus 230 ~~-~---~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~----~~~~~~~~~~~~~~i~~L~~~------L~~~ 295 (402)
.- + .+......-++..+.+.|.+-..+--.-.+.+|..+-. ......+.++ +.+.+. +...
T Consensus 163 ~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv-----~ii~eQa~Ld~~f~~s 237 (556)
T PF05918_consen 163 PLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELV-----DIIEEQADLDQPFDPS 237 (556)
T ss_dssp GS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHH-----HHHHHHHTTTS---SS
T ss_pred hCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHH-----HHHHHHhccCCCCCCc
Confidence 22 1 11133445556666777765333334444555555543 1233333333 233322 1223
Q ss_pred ChhhHHHHHHHHHH----hhcC--ChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHcC
Q 015687 296 SPSVLIPALRTVGN----IVTG--DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN-QIQAIIEAG 368 (402)
Q Consensus 296 ~~~v~~~a~~~l~n----l~~~--~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~ 368 (402)
++......+.|+.. +..+ +.....++.+ .++|.+-.+ .+..+-....+++-++..... ....
T Consensus 238 D~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l-----~e~~kl~lLk~lAE~s~~~~~~d~~~----- 306 (556)
T PF05918_consen 238 DPESIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL-----PEDRKLDLLKLLAELSPFCGAQDARQ----- 306 (556)
T ss_dssp SHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT----------HHHHHHHHHHHHHTT----THHH-----
T ss_pred CHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC-----ChHHHHHHHHHHHHHcCCCCcccHHH-----
Confidence 44433333333322 1111 1223333333 566655555 335677888888888864221 1233
Q ss_pred CHHHHHHHhcc------CCH----HHHHHHHHHHHHhhcC
Q 015687 369 IIGPLVNLLLN------AEF----EIKKEAAWAISNATSG 398 (402)
Q Consensus 369 ~i~~L~~ll~~------~~~----~v~~~a~~aL~nl~~~ 398 (402)
.++.++.+|.. ..+ ...+..+.++.+|+..
T Consensus 307 ~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k 346 (556)
T PF05918_consen 307 LLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARK 346 (556)
T ss_dssp HHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhh
Confidence 34455555421 122 3456667777777654
No 160
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.27 E-value=0.018 Score=54.40 Aligned_cols=207 Identities=17% Similarity=0.174 Sum_probs=130.2
Q ss_pred chHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhc----cchhhHHHHHHHHHHHHhhhCCC
Q 015687 158 AVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGKP 232 (402)
Q Consensus 158 ~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~----~~~~~~~~~~a~~~L~~l~~~~~ 232 (402)
.+..++.+.. ..++..+..++.+++.++.--+.. +.+ + .+++.+...+. ............|+..-|.....
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~-~~l-~-~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD-DDL-D-EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh-hhH-H-HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 4555555443 355777777788777776432111 111 0 12333333331 11244566677787777776542
Q ss_pred CCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCCh--------HHHHHHHHhC----cHHHHHHhcCCCChhhH
Q 015687 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN--------DKIQAVIEAG----VCPRLVELLRHPSPSVL 300 (402)
Q Consensus 233 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~--------~~~~~~~~~~----~i~~L~~~L~~~~~~v~ 300 (402)
. .....+..++.+|.+ +++...+..++..+....+ ..++.+.... ++|.+++.....+...+
T Consensus 267 ~----~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k 340 (415)
T PF12460_consen 267 P----LATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIK 340 (415)
T ss_pred c----hHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhH
Confidence 1 224556667777755 6677778888877765422 2233333433 45666666666666688
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH
Q 015687 301 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVN 375 (402)
Q Consensus 301 ~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ 375 (402)
...+.+++.+..+-|...-.---..++|.+++-|+.+ ++.++..+..+|..+....++.+..-++. ++|.|++
T Consensus 341 ~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~~~~~i~~hl~s-LI~~LL~ 413 (415)
T PF12460_consen 341 SNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEEAPELISEHLSS-LIPRLLK 413 (415)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcCHHHHHHHHHH-HHHHHHh
Confidence 8999999999998875433222237899999999888 88999999999999998877766665443 6666654
No 161
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.27 E-value=0.0016 Score=47.32 Aligned_cols=91 Identities=18% Similarity=0.167 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC
Q 015687 217 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296 (402)
Q Consensus 217 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~ 296 (402)
+..++++|...+..-+.........++|.++..+.++|..|+..||.+|.+++....+.+-. .=..+++.|..++.+++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCc
Confidence 45567777777777655566677899999999999999999999999999998654432211 11357888888899999
Q ss_pred hhhHHHHHHHHHH
Q 015687 297 PSVLIPALRTVGN 309 (402)
Q Consensus 297 ~~v~~~a~~~l~n 309 (402)
+.|+..| ..+-+
T Consensus 82 ~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 82 ENVRSAA-ELLDR 93 (97)
T ss_pred hhHHHHH-HHHHH
Confidence 9988776 44433
No 162
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.27 E-value=0.017 Score=45.67 Aligned_cols=126 Identities=13% Similarity=0.127 Sum_probs=97.3
Q ss_pred hhHHHHhcCChHHHHHHhccchh-----hHHHHHHHHHHHHhhhCCCCCchh-hhhchHHHHHHhccCC--ChhHHHHHH
Q 015687 191 CRDLVLSNGALMPLLAQFNEHAK-----LSMLRNATWTLSNFCRGKPQPLFE-QTRPALPALERLIHSN--DDEVLTDAC 262 (402)
Q Consensus 191 ~~~~~~~~g~i~~L~~~l~~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~l~~L~~lL~~~--~~~v~~~a~ 262 (402)
+...+++.|++..|+.++..+.. .++...++.++..|-.+. ..... ....++..++...... |..+...++
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHH
Confidence 45678889999999999965543 477888899999998874 22222 2245666666666443 789999999
Q ss_pred HHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 015687 263 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 317 (402)
Q Consensus 263 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~ 317 (402)
..|-++...++...+.+.+.=-++.|+.+|..+++.++..++..+..+....++.
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 9999999888877776666667899999999999999999999998887665533
No 163
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.11 Score=50.85 Aligned_cols=210 Identities=18% Similarity=0.130 Sum_probs=108.1
Q ss_pred CchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCch
Q 015687 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236 (402)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 236 (402)
..+|.+.+.|++.+.-+|..|+.|+..|-..... .+ ..+-+.+-..|....|+...++|...|...-..
T Consensus 134 pl~p~IracleHrhsYVRrNAilaifsIyk~~~~---L~--pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~E------ 202 (948)
T KOG1058|consen 134 PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH---LI--PDAPELIESFLLTEQDPSCKRNAFLMLFTTDPE------ 202 (948)
T ss_pred hhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh---hc--CChHHHHHHHHHhccCchhHHHHHHHHHhcCHH------
Confidence 4677777788888888888888888877544221 11 113333344454566777777777665433221
Q ss_pred hhhhchHHHHHHhc---cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 015687 237 EQTRPALPALERLI---HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 313 (402)
Q Consensus 237 ~~~~~~l~~L~~lL---~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~ 313 (402)
.++..+...+ .+-++..+...+..+...+-..+... ...+..+..+|.++++.++-.|..++-++...
T Consensus 203 ----rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~-----~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~ 273 (948)
T KOG1058|consen 203 ----RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK-----ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND 273 (948)
T ss_pred ----HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh-----hHHHHHHHHHHhcCCchhhhhhcceEEEccCC
Confidence 1222222222 12234444444444444443333221 23456677777776777777776666666543
Q ss_pred ChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHH
Q 015687 314 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 393 (402)
Q Consensus 314 ~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 393 (402)
.. .... ....++.++....+-.++--..--|..+.+.+.... .|++-.++++|..+|.++++.++....
T Consensus 274 p~-alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il-----~~l~mDvLrvLss~dldvr~Ktldi~l 342 (948)
T KOG1058|consen 274 PT-ALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKALHEKIL-----QGLIMDVLRVLSSPDLDVRSKTLDIAL 342 (948)
T ss_pred HH-HHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHH-----HHHHHHHHHHcCcccccHHHHHHHHHH
Confidence 22 1111 122344444332244444444444444443322222 134555666677777777777766666
Q ss_pred Hhhc
Q 015687 394 NATS 397 (402)
Q Consensus 394 nl~~ 397 (402)
.|++
T Consensus 343 dLvs 346 (948)
T KOG1058|consen 343 DLVS 346 (948)
T ss_pred hhhh
Confidence 5554
No 164
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.21 E-value=0.005 Score=62.50 Aligned_cols=163 Identities=18% Similarity=0.153 Sum_probs=121.7
Q ss_pred HHHHHHhhhCC-CCCchhhhhchHHHHHHhcc----CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-C
Q 015687 221 TWTLSNFCRGK-PQPLFEQTRPALPALERLIH----SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-H 294 (402)
Q Consensus 221 ~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~----~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~-~ 294 (402)
..++..+|... -......+..+.|.+++..+ .+||+++..|.-+|+.+..-+..... .-++.|+..+. +
T Consensus 898 ~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeks 972 (1251)
T KOG0414|consen 898 ADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKS 972 (1251)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcC
Confidence 44455555543 11123344667888888874 45899999999999998765544322 23688899886 8
Q ss_pred CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHH
Q 015687 295 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLV 374 (402)
Q Consensus 295 ~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~ 374 (402)
+++.+|.++.-++|.++..-+...+ -.-+.|...|.+. ++.+|+.|..+|++|...+ .+--.|.++.+.
T Consensus 973 p~p~IRsN~VvalgDlav~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILnd-----miKVKGql~eMA 1041 (1251)
T KOG0414|consen 973 PSPRIRSNLVVALGDLAVRFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILND-----MIKVKGQLSEMA 1041 (1251)
T ss_pred CCceeeecchheccchhhhcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHH
Confidence 8999999999999999987664333 4456889999888 9999999999999998642 222378999999
Q ss_pred HHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 375 NLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 375 ~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
..+.+++..++.-|-....-|...|
T Consensus 1042 ~cl~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 1042 LCLEDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred HHhcCCcHHHHHHHHHHHHHhhhcc
Confidence 9999999999998886666665554
No 165
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.20 E-value=0.059 Score=54.03 Aligned_cols=199 Identities=19% Similarity=0.206 Sum_probs=129.4
Q ss_pred HHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHH--HHHHhccCCCh-h
Q 015687 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP--ALERLIHSNDD-E 256 (402)
Q Consensus 180 ~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~--~L~~lL~~~~~-~ 256 (402)
+|.++..+.+.....+++.|++..+...+......++...+...+.+++...+..........+. .+-.++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 56677888888888999999999999999767788999999999999998864444333322222 34444544444 7
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC
Q 015687 257 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 336 (402)
Q Consensus 257 v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~ 336 (402)
.-+.++..++.+...+++..... ..+.+...-..++....... .......-+.|.+..++..
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~---------------~r~~~~~~l~e~i~~~~~~~---~~~~~~~~f~~~~~~il~~ 635 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECV---------------FRNSVNELLVEAISRWLTSE---IRVINDRSFFPRILRILRL 635 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCcccc---------------chHHHHHHHHHHhhccCccc---eeehhhhhcchhHHHHhcc
Confidence 88888888888876544311100 01122233333333332221 1112222222326666666
Q ss_pred CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHhh
Q 015687 337 NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNAT 396 (402)
Q Consensus 337 ~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~ 396 (402)
+..+.....|.|++.+++...++....+.+.|+++.+.+.-.. ...+++.++...+.++.
T Consensus 636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 696 (699)
T KOG3665|consen 636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE 696 (699)
T ss_pred cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence 5578899999999999999888888888899999888877433 34567777766655543
No 166
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=97.16 E-value=0.25 Score=47.42 Aligned_cols=287 Identities=13% Similarity=0.096 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHH
Q 015687 85 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR 164 (402)
Q Consensus 85 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 164 (402)
...+..|+..++..+..-.-.++..+ -..--+++......+.|..+...|..++.+....... .. ...+-.
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~~i-----W~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~-~R---~~fF~~ 74 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIEEI-----WYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGL-MR---AEFFRD 74 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHHH-----HHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHH-HH---HHHHHH
Confidence 34566677777776653322222222 2223355555544788888999998888764432111 11 111111
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccch--------------------------hhHHHH
Q 015687 165 LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--------------------------KLSMLR 218 (402)
Q Consensus 165 lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~--------------------------~~~~~~ 218 (402)
+-....++-...-+.+|..|+.++... ..++.++.+.|...+...- +.....
T Consensus 75 I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (464)
T PF11864_consen 75 ISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS 152 (464)
T ss_pred HhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence 223334444556677777777776554 2245666766666652111 223344
Q ss_pred HHHHHHHHhhhCC-CCCchhhhhchHHHHHHhc-cCCChhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhcC
Q 015687 219 NATWTLSNFCRGK-PQPLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLR 293 (402)
Q Consensus 219 ~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~i~~L~~~L~ 293 (402)
.....+.|+...+ .......+.+.+..++.+- .+.+++....++..+-.+... +.+... .++..|.....
T Consensus 153 ~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~~ 227 (464)
T PF11864_consen 153 DLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIVN 227 (464)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHhc
Confidence 4555555555554 3333344455555554443 333444444444444333321 222211 12233333322
Q ss_pred CCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC-----CchhHHHHHHHHHHHHhcCCHHHHHHHHH-c
Q 015687 294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-----YKKSIKKEACWTISNITAGNVNQIQAIIE-A 367 (402)
Q Consensus 294 ~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~ 367 (402)
..+....+-.++.|++...-.+ ..+..|..+|.++ .+..+.+.|+..+..+..+..++...-+. .
T Consensus 228 --~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~ 298 (464)
T PF11864_consen 228 --SVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFS 298 (464)
T ss_pred --ccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceeccc
Confidence 2266778888899988643321 2245677777322 14566778999999888765332222222 2
Q ss_pred --CCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 015687 368 --GIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 368 --~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 396 (402)
-+++.+...++.+++.+-.+.+..+.++.
T Consensus 299 ~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 299 PSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 27889999999888888888888888777
No 167
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=97.11 E-value=0.16 Score=51.31 Aligned_cols=217 Identities=15% Similarity=0.176 Sum_probs=133.2
Q ss_pred CCchHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhc---cchh----hHHHHHHHHH
Q 015687 156 HGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAK----LSMLRNATWT 223 (402)
Q Consensus 156 ~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~---~~~~----~~~~~~a~~~ 223 (402)
.|++..++.++.+ ....+....+..|...+.- +.+|+.+++.|+++.|+..+. .... ..+.+....+
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 4788888888865 3455666677777766655 568999999999999999884 2222 4555555555
Q ss_pred HHHhhhCCCCCchh-------------hhhchHHHHHHhccC----CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 015687 224 LSNFCRGKPQPLFE-------------QTRPALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 286 (402)
Q Consensus 224 L~~l~~~~~~~~~~-------------~~~~~l~~L~~lL~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~ 286 (402)
+..+.......... ....-+..+++.+.+ .++.+....+++|-+|+.+..+..+.+++. +.
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~ 272 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FK 272 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HH
Confidence 55444332111110 012335556665544 468899999999999999999887777654 23
Q ss_pred HHHHhc--CCCChhhHHHHHHHHHHhhcCC------hHHHHHHHhCCChHHHHHHhcCCC-------chhH--------H
Q 015687 287 RLVELL--RHPSPSVLIPALRTVGNIVTGD------DMQTQCIINHQALPCLLDLLTQNY-------KKSI--------K 343 (402)
Q Consensus 287 ~L~~~L--~~~~~~v~~~a~~~l~nl~~~~------~~~~~~i~~~~~l~~L~~ll~~~~-------~~~v--------~ 343 (402)
+.+.+= ......--...+.+++.++.+- ....+.+++.|++...+..|.... +++. -
T Consensus 273 p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL 352 (802)
T PF13764_consen 273 PYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL 352 (802)
T ss_pred HhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence 333321 1111111123366666666543 356778889999998888885441 1222 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH
Q 015687 344 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNL 376 (402)
Q Consensus 344 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l 376 (402)
..+...|.-++.++.. .+.++..++++.+-.+
T Consensus 353 p~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH~L 384 (802)
T PF13764_consen 353 PYILRLLRGLARGHEP-TQLLIAEQLLPLLHRL 384 (802)
T ss_pred HHHHHHHHHHHhcCHH-HHHHHHhhHHHHHHHh
Confidence 4567777778776544 4455667777544444
No 168
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.034 Score=54.02 Aligned_cols=158 Identities=22% Similarity=0.151 Sum_probs=105.1
Q ss_pred CchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCch
Q 015687 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236 (402)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 236 (402)
++=+.+-.++.+.++-+|...+.+++- +..... ..++|..|+..--++.+.++++.|.-+|.-+|..+|
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~al-Ay~GTg------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp---- 587 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLAL-AYVGTG------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP---- 587 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHH-HHhccC------chhhHHHhhcccccccchHHHHHHHHHheeeEecCh----
Confidence 344555667888888888888877763 322221 223566667664467889999999999998887754
Q ss_pred hhhhchHHHHHHhc-cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 015687 237 EQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 315 (402)
Q Consensus 237 ~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~ 315 (402)
..+|..+.+| .+.++-|+..++.+|+-.|.+..... ++..|-++.+++..-||..|+.+++-+.....
T Consensus 588 ----~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e-------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 588 ----EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE-------AINLLEPLTSDPVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred ----hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH-------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence 3456666676 45689999999999998886654331 24555566667778899999999988875332
Q ss_pred HHHHHHHhCCChHHHHHHhcCC
Q 015687 316 MQTQCIINHQALPCLLDLLTQN 337 (402)
Q Consensus 316 ~~~~~i~~~~~l~~L~~ll~~~ 337 (402)
++...-. .++...+.+++.+.
T Consensus 657 ~~~~pkv-~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 657 EQLCPKV-NGFRKQLEKVINDK 677 (929)
T ss_pred cccCchH-HHHHHHHHHHhhhh
Confidence 2211111 14455666666555
No 169
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.05 E-value=0.017 Score=45.71 Aligned_cols=125 Identities=13% Similarity=0.119 Sum_probs=99.2
Q ss_pred hhHHhhcCcHHHHHHhhcCCCC-----HHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC--CCHHHHHHHHH
Q 015687 107 INEVIQSGVVPRFIEFLSRDDF-----PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVW 179 (402)
Q Consensus 107 ~~~~~~~g~i~~L~~lL~~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~ 179 (402)
..+++..|++..|++++.++.. .++...++.++..+..+..-.- ..++...|...+.+.+. .+..+.+.|+.
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 4578889999999999988762 3677788889988888643223 34555677788887775 36889999999
Q ss_pred HHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCC
Q 015687 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 233 (402)
Q Consensus 180 ~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 233 (402)
.|-++...++.....+.+.=-++.|+.+| +.++++++.++...+-.|....+.
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hL-q~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHL-QVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcCCh
Confidence 99999999887677777766799999999 778999999999988888877543
No 170
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.036 Score=54.20 Aligned_cols=259 Identities=16% Similarity=0.151 Sum_probs=132.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH-
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV- 152 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~- 152 (402)
+-+=.++.+........|+.++..+-. ...+.+.. .+..|--+++++. ..+|+.|.++|..+|...|.....
T Consensus 248 ~fl~s~l~~K~emV~~EaArai~~l~~----~~~r~l~p--avs~Lq~flssp~-~~lRfaAvRtLnkvAm~~P~~v~~c 320 (865)
T KOG1078|consen 248 PFLESCLRHKSEMVIYEAARAIVSLPN----TNSRELAP--AVSVLQLFLSSPK-VALRFAAVRTLNKVAMKHPQAVTVC 320 (865)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhhccc----cCHhhcch--HHHHHHHHhcCcH-HHHHHHHHHHHHHHHHhCCcccccc
Confidence 444456777788899999998888732 22333322 5777888888888 899999999999999765543211
Q ss_pred ------HHh-C---CchHHHHHhhCCCCHH----HHHHHHHHHHHhhCCCch-----hhHHH-----HhcCChHHHHHHh
Q 015687 153 ------VID-H---GAVPIFVRLLSSPTDD----VREQAVWALGNVAGDSPK-----CRDLV-----LSNGALMPLLAQF 208 (402)
Q Consensus 153 ------~~~-~---g~i~~L~~lL~~~~~~----v~~~a~~~L~nl~~~~~~-----~~~~~-----~~~g~i~~L~~~l 208 (402)
++. . =....+..+|+..... +..+.....++++.+... .+..+ ...+.+..|.++|
T Consensus 321 N~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~L 400 (865)
T KOG1078|consen 321 NLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNML 400 (865)
T ss_pred chhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 111 0 0122333344333222 222333333333222110 00000 0112233344444
Q ss_pred ccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 015687 209 NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 288 (402)
Q Consensus 209 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L 288 (402)
.+...-+..+....++..+....|.... .++..|...+. |-+....+...|.-+....+.. ......+..+
T Consensus 401 r~eGg~e~K~aivd~Ii~iie~~pdsKe----~~L~~LCefIE--Dce~~~i~~rILhlLG~EgP~a---~~Pskyir~i 471 (865)
T KOG1078|consen 401 REEGGFEFKRAIVDAIIDIIEENPDSKE----RGLEHLCEFIE--DCEFTQIAVRILHLLGKEGPKA---PNPSKYIRFI 471 (865)
T ss_pred HhccCchHHHHHHHHHHHHHHhCcchhh----HHHHHHHHHHH--hccchHHHHHHHHHHhccCCCC---CCcchhhHHH
Confidence 3434444455555555555444332221 12222333221 1122223333333333211100 0001123333
Q ss_pred HHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 015687 289 VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354 (402)
Q Consensus 289 ~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 354 (402)
...+--++..+|..|..++.++..+.+... ..+...+.+.+.+. +.++|..|.+.|.++-
T Consensus 472 yNRviLEn~ivRaaAv~alaKfg~~~~~l~-----~sI~vllkRc~~D~-DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 472 YNRVILENAIVRAAAVSALAKFGAQDVVLL-----PSILVLLKRCLNDS-DDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhcCCCCcc-----ccHHHHHHHHhcCc-hHHHHHHHHHHHHHhh
Confidence 333334577789999999999986554222 24445667788888 9999999999999887
No 171
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.02 E-value=0.0014 Score=48.96 Aligned_cols=73 Identities=21% Similarity=0.246 Sum_probs=61.1
Q ss_pred CChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 325 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 325 ~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
.++..|+++|..+.++.+..-||.=|+.++...|..+..+-+.|+-..+++++.++|++|+.+|+.++..+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4577899999555488899999999999999778877777788999999999999999999999999988764
No 172
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.98 E-value=0.04 Score=46.39 Aligned_cols=144 Identities=13% Similarity=0.167 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCC----CCHHHHHHHHHHHHHhhcCCC-cchHHHHhCCch
Q 015687 85 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD----DFPQLQFEAAWALTNIASGTS-ENTRVVIDHGAV 159 (402)
Q Consensus 85 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~----~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i 159 (402)
+.-...|+..|..++|. ++....+.+..+=-.|..+|... .++-++..++.+++.+...++ +....+...++|
T Consensus 93 snRVcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIV 170 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIV 170 (293)
T ss_pred cchHHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhH
Confidence 44555677777777663 46667788887666667777543 247899999999999987543 455667788999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhc-------CChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 160 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN-------GALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 160 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~-------g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
|..++.++.+++.-+..|..++..+..++.+..-.+... -.+..++..+.+.++..+..++..+..+|+.+
T Consensus 171 PlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 171 PLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999988776542222111 13444455555667888899999999998876
No 173
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.96 E-value=0.062 Score=48.33 Aligned_cols=170 Identities=16% Similarity=0.082 Sum_probs=115.5
Q ss_pred CchHHHH-HhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCc
Q 015687 157 GAVPIFV-RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235 (402)
Q Consensus 157 g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 235 (402)
+.++.|+ ..+.++++.+|+.++.+||-.|--+..... ..++.+...+ +..+..++..++.++..+....+...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~-~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQAL-QKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4555555 577889999999999999998866543222 2466677777 55688999999999988876542211
Q ss_pred h---------hhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC----CCChhhHHH
Q 015687 236 F---------EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR----HPSPSVLIP 302 (402)
Q Consensus 236 ~---------~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~----~~~~~v~~~ 302 (402)
+ .....++..+.+.+.+.+++++..++..++.|.-...-.- ...++..|+-..- .++..++..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 1 1224678888899999999999999999999763322111 1233444444432 234567777
Q ss_pred HHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC
Q 015687 303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN 337 (402)
Q Consensus 303 a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~ 337 (402)
-...+-..+...+.. +..+...++|.+..+....
T Consensus 176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence 777777888776654 4566668888888888665
No 174
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.2 Score=49.00 Aligned_cols=278 Identities=17% Similarity=0.138 Sum_probs=161.3
Q ss_pred cCcHHHHHHhhcCC-------CCHHHHHHHHHHHHHhhc--CCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHH
Q 015687 113 SGVVPRFIEFLSRD-------DFPQLQFEAAWALTNIAS--GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN 183 (402)
Q Consensus 113 ~g~i~~L~~lL~~~-------~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~n 183 (402)
.|+++.++..|... +++.-.+.|++.+.++.+ ..+.....+.+.-+++.++..++++.--++..||..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 57899999998421 123445667777777665 334444555555677888888888888899999999999
Q ss_pred hhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCch---hhhhchHHHHHHhccCCChhHHHH
Q 015687 184 VAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF---EQTRPALPALERLIHSNDDEVLTD 260 (402)
Q Consensus 184 l~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~---~~~~~~l~~L~~lL~~~~~~v~~~ 260 (402)
+..+ .++..+-..+.+...+++ ++.+-.++-.|+-++..+..+. .... ..+.+.++.|+.+-+.-+.++...
T Consensus 487 ~eeD---fkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~-q~h~k~sahVp~tmekLLsLSn~feiD~LS~ 561 (970)
T COG5656 487 IEED---FKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNE-QSHEKFSAHVPETMEKLLSLSNTFEIDPLSM 561 (970)
T ss_pred HHHh---cccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhch-hhhHHHHhhhhHHHHHHHHhcccccchHHHH
Confidence 9544 333434444677777888 5578888999999999888875 1111 222344444444444445566665
Q ss_pred HHHHH-HHhccCChHHHHHHHHh---CcHHHHHHhcCCCC------hhhHHHHHHHHHHhhc------CChHHHHHHHhC
Q 015687 261 ACWAL-SYLSDGTNDKIQAVIEA---GVCPRLVELLRHPS------PSVLIPALRTVGNIVT------GDDMQTQCIINH 324 (402)
Q Consensus 261 a~~~l-~~l~~~~~~~~~~~~~~---~~i~~L~~~L~~~~------~~v~~~a~~~l~nl~~------~~~~~~~~i~~~ 324 (402)
+...+ .+.+..-......+... ..+.....++.+++ ++-+..|.+.|..+.+ ..+...+ -+..
T Consensus 562 vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk-~le~ 640 (970)
T COG5656 562 VMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLK-YLEV 640 (970)
T ss_pred HHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHH-HHHH
Confidence 55443 33332211111112111 12223333333221 1223344444433322 1122222 2334
Q ss_pred CChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCH-HHHHHHHHHHHHhhcCC
Q 015687 325 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF-EIKKEAAWAISNATSGG 399 (402)
Q Consensus 325 ~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~-~v~~~a~~aL~nl~~~~ 399 (402)
...|.+-=++.+. ..++-.+|+-.+-+.+--..+ +. -+.-|+.+.+.+++.+... .--.++.-++.|+...|
T Consensus 641 slypvi~Filkn~-i~dfy~Ea~dildg~tf~ske-I~-pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG 713 (970)
T COG5656 641 SLYPVISFILKNE-ISDFYQEALDILDGYTFMSKE-IE-PIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYG 713 (970)
T ss_pred HHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHH-hh-hhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhC
Confidence 6677777777777 777888888888776643222 22 1223556666666666553 67788999999998877
No 175
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.91 E-value=0.014 Score=59.37 Aligned_cols=159 Identities=21% Similarity=0.249 Sum_probs=118.6
Q ss_pred cHHHHHHhhcC----CCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCc
Q 015687 115 VVPRFIEFLSR----DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSP 189 (402)
Q Consensus 115 ~i~~L~~lL~~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~ 189 (402)
+.|.+++.++. ++ |++|..|.-+|+.+..-+.++.. ..+|.|+..++ ++++.+|..++-++|-++..-|
T Consensus 920 f~piv~e~c~n~~~~sd-p~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSD-PELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHhcCCCcCCC-HHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 57888888854 45 89999999999998876555443 35899999888 7999999999999999987766
Q ss_pred hhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhc
Q 015687 190 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (402)
Q Consensus 190 ~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~ 269 (402)
..-+. .-+.|...+ .+.++.++++|..++++|... ....+.|.++.+..+|.++++.|..-|=..+..|+
T Consensus 994 nlie~-----~T~~Ly~rL-~D~~~~vRkta~lvlshLILn----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 994 NLIEP-----WTEHLYRRL-RDESPSVRKTALLVLSHLILN----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred cccch-----hhHHHHHHh-cCccHHHHHHHHHHHHHHHHh----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 54222 345566666 788999999999999999866 34566899999999999999998877765666666
Q ss_pred cCChHHHHHHHHhCcHHHHHHhcCCC
Q 015687 270 DGTNDKIQAVIEAGVCPRLVELLRHP 295 (402)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~L~~~L~~~ 295 (402)
...+..+ +++|-++..|++.
T Consensus 1064 ~k~n~iy------nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1064 SKGNTIY------NLLPDILSRLSNG 1083 (1251)
T ss_pred hcccchh------hhchHHHHhhccC
Confidence 4443222 2345555555443
No 176
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.89 E-value=0.0015 Score=36.35 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=26.5
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 369 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
++|.+++++++++++||..|+++|+.++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 378999999999999999999999999864
No 177
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.045 Score=54.10 Aligned_cols=225 Identities=13% Similarity=0.102 Sum_probs=145.8
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHh
Q 015687 118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS 197 (402)
Q Consensus 118 ~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 197 (402)
.-+..+.++. ..++-.++.-|..+.... +....+...+++...+..|.+.++-+--.|+..+..||.-.|+
T Consensus 731 eai~sl~d~q-vpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e------- 801 (982)
T KOG4653|consen 731 EAISSLHDDQ-VPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE------- 801 (982)
T ss_pred HHHHHhcCCc-ccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch-------
Confidence 3344455555 678899999999999853 5556666678999999999999999998999988888755332
Q ss_pred cCChHHHHHHhccc---hhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChH
Q 015687 198 NGALMPLLAQFNEH---AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 274 (402)
Q Consensus 198 ~g~i~~L~~~l~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~ 274 (402)
.+++.+...-... ..++.+-.+-.++.++...-......+...++..++...+++|...+..++..+++++.....
T Consensus 802 -~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~ 880 (982)
T KOG4653|consen 802 -DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAF 880 (982)
T ss_pred -hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh
Confidence 3566666643221 113444445577777776654444555567777888888888888899999999999854332
Q ss_pred HHHHHHHhCcHHHHHHhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHhC---CChHHHHHHhcCCCchhHHHHHHHHH
Q 015687 275 KIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINH---QALPCLLDLLTQNYKKSIKKEACWTI 350 (402)
Q Consensus 275 ~~~~~~~~~~i~~L~~~L~-~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~---~~l~~L~~ll~~~~~~~v~~~a~~~L 350 (402)
.....+ ..++..++.+.. +++.-+|..|+..+..+..+.....-.+... .....+........+..++..|+.++
T Consensus 881 ~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 881 QVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL 959 (982)
T ss_pred hhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 222111 123445555543 4567899999999999988776444333322 22333333343332555666666655
Q ss_pred HHH
Q 015687 351 SNI 353 (402)
Q Consensus 351 ~nl 353 (402)
--+
T Consensus 960 eei 962 (982)
T KOG4653|consen 960 EEI 962 (982)
T ss_pred HHH
Confidence 433
No 178
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.84 E-value=0.24 Score=41.96 Aligned_cols=177 Identities=14% Similarity=0.106 Sum_probs=111.7
Q ss_pred HHHHHHHHHhhhCCCCCchhhhhchHH-HHHHhccC-----CChhHHHHHHHHHHHhccCC-hHHHHHHHHhCcHHHHHH
Q 015687 218 RNATWTLSNFCRGKPQPLFEQTRPALP-ALERLIHS-----NDDEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVE 290 (402)
Q Consensus 218 ~~a~~~L~~l~~~~~~~~~~~~~~~l~-~L~~lL~~-----~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~L~~ 290 (402)
.++...|-.++.+ |.....+...-+| .+.++|.. +.+..+-.++..++.+...+ .+.+..+...+++|.++.
T Consensus 97 cnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 97 CNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 3444444444444 5554455444444 34455533 35778999999999998654 466777889999999999
Q ss_pred hcCCCChhhHHHHHHHHHHhhcCChH--HHH----H--HHhCCChHH-HHHHhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 015687 291 LLRHPSPSVLIPALRTVGNIVTGDDM--QTQ----C--IINHQALPC-LLDLLTQNYKKSIKKEACWTISNITAGNVNQI 361 (402)
Q Consensus 291 ~L~~~~~~v~~~a~~~l~nl~~~~~~--~~~----~--i~~~~~l~~-L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~ 361 (402)
.+..+++.-+.-|..+++.|...+.. ++- . .+. -++.. +.++.+.+ ++.+-+.++.+..+++.. +..+
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~-~~L~kmv~~l~~~p-s~RllKhviRcYlrLsdn-prar 252 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVA-LVLGKMVFQLVSMP-SPRLLKHVIRCYLRLSDN-PRAR 252 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCC-HHHH
Confidence 99999998999999999999865431 111 1 111 22333 34444555 888999999999999875 5544
Q ss_pred HHHHH---cCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 362 QAIIE---AGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 362 ~~l~~---~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
..+-. .++-..-...+-.+|+..+.--...+.|+..+
T Consensus 253 ~aL~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~~~ 292 (293)
T KOG3036|consen 253 AALRSCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLCTG 292 (293)
T ss_pred HHHHhhCcchhccchHHHHHhcChhHHHHHHHHHHHhccC
Confidence 44432 12222222333346666776666677777654
No 179
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.84 E-value=0.0027 Score=47.46 Aligned_cols=73 Identities=25% Similarity=0.352 Sum_probs=61.4
Q ss_pred hchHHHHHHhc-cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 015687 240 RPALPALERLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 240 ~~~l~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
..++..|+.+| .+.|+.+..-||.-|+.++...+.....+-+.|+-..+..++.++++.|+..|+.++..+..
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 45677888998 45588889999999999998777777777788999999999999999999999999988764
No 180
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.81 E-value=0.052 Score=50.07 Aligned_cols=184 Identities=14% Similarity=0.107 Sum_probs=118.7
Q ss_pred HHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 73 LPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 73 i~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
+..++..+.+. ..+.+..|+..|..++..+ ...+-.-.-..++..+++.|.+..++..+..|+++|..++...+.
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~-sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~--- 363 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEG-SFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA--- 363 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH---
Confidence 34455555543 4677778888899887754 333322122236777888888844378999999999999986432
Q ss_pred HHHhC--CchHHHHHhhCCCCHHHHHHHHH-HHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhh
Q 015687 152 VVIDH--GAVPIFVRLLSSPTDDVREQAVW-ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (402)
Q Consensus 152 ~~~~~--g~i~~L~~lL~~~~~~v~~~a~~-~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~ 228 (402)
.+.+. -+|..++..-.+..+++...|.. ++.-++...|.. .|..+..++ ...|.+....++..+..++
T Consensus 364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~I-lt~D~~~~~~~iKm~Tkl~ 434 (516)
T KOG2956|consen 364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLI-LTADEPRAVAVIKMLTKLF 434 (516)
T ss_pred hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHH-hcCcchHHHHHHHHHHHHH
Confidence 23332 24556666556665555545544 455566666632 233344444 3356666666777778888
Q ss_pred hCCCCCch-hhhhchHHHHHHhccCCChhHHHHHHHHHHHhc
Q 015687 229 RGKPQPLF-EQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (402)
Q Consensus 229 ~~~~~~~~-~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~ 269 (402)
..-+.... ..+..+.|.+++...+....|+..++.+|..+.
T Consensus 435 e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 435 ERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred hhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 76533322 344788899999999999999999999998875
No 181
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.79 E-value=0.012 Score=50.33 Aligned_cols=142 Identities=11% Similarity=0.155 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCC----CHHHHHHHHHHHHHhhcC-CCcchHHHHhCCchHHH
Q 015687 88 QLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD----FPQLQFEAAWALTNIASG-TSENTRVVIDHGAVPIF 162 (402)
Q Consensus 88 ~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~----~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L 162 (402)
.-.|+..|..+++ .++....++++.+.-.|..+|+..+ .+.++..++.+++.+... +++....+.+.+++|..
T Consensus 67 VcnaLaLlQ~vAs--hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplc 144 (262)
T PF04078_consen 67 VCNALALLQCVAS--HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLC 144 (262)
T ss_dssp HHHHHHHHHHHHH---TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHH
T ss_pred HHHHHHHHHHHHc--ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHH
Confidence 3445566666666 3577788999998888888887643 367889999999999873 35667778889999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCCCchhhH------HHH-hcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 163 VRLLSSPTDDVREQAVWALGNVAGDSPKCRD------LVL-SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 163 ~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~------~~~-~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
++.++.++.-.+..|...+..+..++.+..- .+. -..++..++..+...+++.+.+++..+...|+.+.
T Consensus 145 Lr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 145 LRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 9999999888899999999888766543321 111 11245566666667788999999999999999883
No 182
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.77 E-value=0.011 Score=58.52 Aligned_cols=153 Identities=18% Similarity=0.202 Sum_probs=112.3
Q ss_pred hhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHH--hCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChH
Q 015687 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE--AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 316 (402)
Q Consensus 239 ~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~ 316 (402)
...++|.+++.+++.+...+..-+.+|+++..+-+. +.+.. ..++|.|++.|+-++..++..++.+|.-+......
T Consensus 865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence 367889999999877888888888889888766553 22322 25788888999999999999999999988875543
Q ss_pred HHHHHHhCCChHHHHHHhcCCCc---hhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHH
Q 015687 317 QTQCIINHQALPCLLDLLTQNYK---KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 393 (402)
Q Consensus 317 ~~~~i~~~~~l~~L~~ll~~~~~---~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 393 (402)
....-++ .++|.++.+-.+. + ..+|..|..+|..|+..-|...-......++..|...|.++-..||++|..+=.
T Consensus 943 L~t~~~~-Tlvp~lLsls~~~-~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 943 LQTEHLS-TLVPYLLSLSSDN-DNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred cchHHHh-HHHHHHHhcCCCC-CcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 3222222 5678888777666 4 578999999999999843333222333458888999998888889999987754
Q ss_pred Hh
Q 015687 394 NA 395 (402)
Q Consensus 394 nl 395 (402)
+-
T Consensus 1021 ~W 1022 (1030)
T KOG1967|consen 1021 NW 1022 (1030)
T ss_pred hh
Confidence 43
No 183
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.29 Score=49.44 Aligned_cols=264 Identities=14% Similarity=0.114 Sum_probs=137.0
Q ss_pred CHHHHHHHHHHHHHHhccC-CCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHH
Q 015687 84 DRNIQLDATTQFRKLLSIE-RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF 162 (402)
Q Consensus 84 ~~~~~~~a~~~l~~l~s~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 162 (402)
++.....|+..+..+.+.= +..+.+...+.=+++.+...++++- -.+|..|+|+++.+++.. ......-..++...
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~d--f~d~~~l~~ale~t 507 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSID--FKDPNNLSEALELT 507 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhcc--CCChHHHHHHHHHH
Confidence 3445555666555554321 2344444444445566666677776 789999999999999632 22222222466666
Q ss_pred HHhhC-CCCHHHHHHHHHHHHHhhCCCchhhHHHHhc--CChHHHHHHhccchhhHHHHHHHHHH-HHhhhCCCCCchhh
Q 015687 163 VRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSN--GALMPLLAQFNEHAKLSMLRNATWTL-SNFCRGKPQPLFEQ 238 (402)
Q Consensus 163 ~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~--g~i~~L~~~l~~~~~~~~~~~a~~~L-~~l~~~~~~~~~~~ 238 (402)
...|. +.+-.|+-.|+-||..+..+.+.....+..+ +.++.|+.+. +..+.+....++..+ +..+..-..-....
T Consensus 508 ~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~-ne~End~Lt~vme~iV~~fseElsPfA~eL 586 (1010)
T KOG1991|consen 508 HNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLS-NEVENDDLTNVMEKIVCKFSEELSPFAVEL 586 (1010)
T ss_pred HHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHHhhchhHHHH
Confidence 67666 7778899999999999987766443323221 1233344444 222333333333322 23333222222333
Q ss_pred hhchHHHHHHhccC---C---ChhHHHHHHHHHHHh---cc---CChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHH
Q 015687 239 TRPALPALERLIHS---N---DDEVLTDACWALSYL---SD---GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306 (402)
Q Consensus 239 ~~~~l~~L~~lL~~---~---~~~v~~~a~~~l~~l---~~---~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~ 306 (402)
...+...+.+++.. . +.+=...|.++|..+ .. ..++..+ -++.-+++.+-.+|.+.-.++-+.++..
T Consensus 587 ~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l~vi~~iL~~~i~dfyeE~~ei 665 (1010)
T KOG1991|consen 587 CQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVLPVIGFILKNDITDFYEELLEI 665 (1010)
T ss_pred HHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45666677777763 1 122222333333322 21 1222221 2233445555556666666777778777
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 307 l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
+..++...++..-.+ -|+++.+.+.+... ...--....-.|.|+..
T Consensus 666 ~~~~t~~~~~Isp~m--W~ll~li~e~~~~~-~~dyf~d~~~~l~N~vt 711 (1010)
T KOG1991|consen 666 VSSLTFLSKEISPIM--WGLLELILEVFQDD-GIDYFTDMMPALHNYVT 711 (1010)
T ss_pred HhhhhhhhcccCHHH--HHHHHHHHHHHhhh-hHHHHHHHHHHHhhhee
Confidence 777766543221111 14555566655554 44444455555555553
No 184
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.65 E-value=0.039 Score=57.78 Aligned_cols=166 Identities=16% Similarity=0.122 Sum_probs=113.9
Q ss_pred HHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC
Q 015687 217 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296 (402)
Q Consensus 217 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~ 296 (402)
..++.|+...++...+ -.....+++..++..|..+...++..|+.||+.+...++.. +....+-..+-.-+.+..
T Consensus 794 ~~~a~li~~~la~~r~--f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~Dss 868 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHARS--FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSS 868 (1692)
T ss_pred chhHHHHHHHHHhhhH--HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccch
Confidence 4456666666665421 11223567777888888888999999999999999776632 333334444555566778
Q ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH
Q 015687 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNL 376 (402)
Q Consensus 297 ~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l 376 (402)
..||+.|+..+|..+...++..... ...+..-+.++ .-.||+.+...+..+|...|+. ..+.+ +...++.-
T Consensus 869 asVREAaldLvGrfvl~~~e~~~qy-----Y~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf-~~i~~--~cakmlrR 939 (1692)
T KOG1020|consen 869 ASVREAALDLVGRFVLSIPELIFQY-----YDQIIERILDT-GVSVRKRVIKILRDICEETPDF-SKIVD--MCAKMLRR 939 (1692)
T ss_pred hHHHHHHHHHHhhhhhccHHHHHHH-----HHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCCh-hhHHH--HHHHHHHH
Confidence 8999999999999998877665533 34566666666 7889999999999999866553 22211 23344444
Q ss_pred hccCCHHHHHHHHHHHHHhh
Q 015687 377 LLNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 377 l~~~~~~v~~~a~~aL~nl~ 396 (402)
.++++..+++-++.++.++.
T Consensus 940 v~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 940 VNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred hccchhHHHHHHHHHHHHHh
Confidence 45555558888888887764
No 185
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.65 E-value=0.0024 Score=35.46 Aligned_cols=29 Identities=38% Similarity=0.705 Sum_probs=25.8
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAG 186 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~ 186 (402)
++|.++++++++++++|..|+++|+.++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999874
No 186
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=96.64 E-value=0.02 Score=38.89 Aligned_cols=66 Identities=15% Similarity=0.197 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 015687 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA 367 (402)
Q Consensus 300 ~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 367 (402)
.+.|+|++|++++. +.....+.+.++++.++++..+.+...+|-.|.++|+-++.. .+..+.+-+.
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~ 69 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDEL 69 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHc
Confidence 56899999999884 445666667899999999998775789999999999988764 5545544443
No 187
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.59 E-value=0.089 Score=45.15 Aligned_cols=145 Identities=13% Similarity=0.113 Sum_probs=100.9
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHh-------cCCCC--h---hhHHHHHHHHHHhhcCChHHHH
Q 015687 253 NDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVEL-------LRHPS--P---SVLIPALRTVGNIVTGDDMQTQ 319 (402)
Q Consensus 253 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~~-------L~~~~--~---~v~~~a~~~l~nl~~~~~~~~~ 319 (402)
.+++.++.|+.-|+.--+..++....+..+ |.+..|++= +..+. . .-...|+..+..++++ ++.+.
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr~ 85 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETRM 85 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHH
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHHH
Confidence 366778888888877666555555555554 555554332 23332 1 2334566666677774 55777
Q ss_pred HHHhCCChHHHHHHhcCCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHH
Q 015687 320 CIINHQALPCLLDLLTQNY----KKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394 (402)
Q Consensus 320 ~i~~~~~l~~L~~ll~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~n 394 (402)
.++++++.-.|..+|+... -+.+|-.+..+++.+.. ++++.+..+++.+++|..++.++.++.-.+..|...+..
T Consensus 86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 7999988888888886541 25688899999999997 688999999999999999999999999999999999888
Q ss_pred hhcC
Q 015687 395 ATSG 398 (402)
Q Consensus 395 l~~~ 398 (402)
+..+
T Consensus 166 IL~d 169 (262)
T PF04078_consen 166 ILLD 169 (262)
T ss_dssp HHHS
T ss_pred HHcc
Confidence 7643
No 188
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.57 E-value=0.19 Score=43.47 Aligned_cols=103 Identities=13% Similarity=0.066 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHH
Q 015687 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ 207 (402)
Q Consensus 129 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~ 207 (402)
+.....|+.+|..++--.+..+..+.....+..|+.+|+ ...+.++..++.+|..+..++|.+...+-+.+++..++.+
T Consensus 105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 345566888998888888999999999999999999995 4678999999999999999999998999999999999999
Q ss_pred hcc-chhhHHHHHHHHHHHHhhhCC
Q 015687 208 FNE-HAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 208 l~~-~~~~~~~~~a~~~L~~l~~~~ 231 (402)
++. +.+.+++-.+..+|.-.....
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHccc
Confidence 964 346778777887777665544
No 189
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=96.57 E-value=0.013 Score=48.65 Aligned_cols=111 Identities=16% Similarity=0.164 Sum_probs=78.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCC--------CCHHHHHHHHHHHHHhh
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD--------DFPQLQFEAAWALTNIA 143 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~--------~~~~~~~~a~~~L~~l~ 143 (402)
....+++.+.+..... ..+..|+..+......-++.|++.|++..|+++|..- .+...+.+++.||..|.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 3456778887765432 4455555555543223367888999999999988631 22578999999999999
Q ss_pred cCCCcchHHHHh-CCchHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015687 144 SGTSENTRVVID-HGAVPIFVRLLSSPTDDVREQAVWALGNVA 185 (402)
Q Consensus 144 ~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~ 185 (402)
.. ......+++ .+++..++..|.+++..++..++..|..+|
T Consensus 145 n~-~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NT-KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SS-HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred cc-HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 75 444555554 689999999999999999999999999886
No 190
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.50 E-value=0.15 Score=47.38 Aligned_cols=144 Identities=14% Similarity=0.208 Sum_probs=106.2
Q ss_pred CCchhHHhh-cCcHHHHHHhhcCCC--CHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhC-C---CCHHHHHH
Q 015687 104 SPPINEVIQ-SGVVPRFIEFLSRDD--FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-S---PTDDVREQ 176 (402)
Q Consensus 104 ~~~~~~~~~-~g~i~~L~~lL~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~---~~~~v~~~ 176 (402)
....+.+++ +.+...|..++++.. -+.+-..|+.++..+....|..-..+.+.|+++.++..+. . ++.++...
T Consensus 95 ~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~ 174 (379)
T PF06025_consen 95 GDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTS 174 (379)
T ss_pred ccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHH
Confidence 334455667 666777777887754 2678889999999999988999999999999999999877 4 67888888
Q ss_pred HHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhh------HHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHH
Q 015687 177 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL------SMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 248 (402)
Q Consensus 177 a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~------~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ 248 (402)
.-.+|+.||-+... .+.+.+.+.++.+++++.+.... +.....-..+-.|.++.|.-....+..++..+-+
T Consensus 175 lP~~l~AicLN~~G-l~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~l~~ 251 (379)
T PF06025_consen 175 LPNVLSAICLNNRG-LEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKILDR 251 (379)
T ss_pred HHHHHhHHhcCHHH-HHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 88899999988775 57778889999999998433222 4455566677788888765555444444444433
No 191
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.48 E-value=0.016 Score=52.11 Aligned_cols=112 Identities=16% Similarity=0.223 Sum_probs=86.5
Q ss_pred CcHHHH-HHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHH
Q 015687 283 GVCPRL-VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQ 360 (402)
Q Consensus 283 ~~i~~L-~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~ 360 (402)
++++.+ .+.+.+.++.+|..|+.++|-.+--+..... ..++.+...++.+ ++.++..|+.++..+.. +..+.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchh
Confidence 344444 4778899999999999999999987664444 3466788888777 89999999999998886 33333
Q ss_pred HHHHHH-------cCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCCC
Q 015687 361 IQAIIE-------AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 361 ~~~l~~-------~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 400 (402)
...... ..++..+.+.+.+.+++++..|+..++.|.-.|.
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~ 146 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR 146 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC
Confidence 333222 4578888999999999999999999999887764
No 192
>PRK14707 hypothetical protein; Provisional
Probab=96.46 E-value=0.92 Score=49.92 Aligned_cols=315 Identities=16% Similarity=0.100 Sum_probs=169.6
Q ss_pred HHHHHHhhcC--CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 73 LPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 73 i~~l~~~l~s--~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
+..+++.+.. ++.+-+ .++..|...++.+ ....+.+-..|+...|-.+-+-++++..+..+...-..++.+ +..+
T Consensus 165 ~~lllNafSKw~~~~~c~-~aa~~la~~~~~~-d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~ 241 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQ-AVAPRFAALVASD-DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLR 241 (2710)
T ss_pred HHHHHHHhhcCCCCchHH-HHHHHHHHHhcCC-hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHH
Confidence 4566666653 334444 3445555554443 334444544454444444555566466555444444445553 4444
Q ss_pred HHHHhCCchHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 151 RVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
..+-..| +-..+..|+ =++.....+++.+|..=..+.+..+..+ +...+...++-|.+.++..+-..++..|..=..
T Consensus 242 ~~~~~q~-va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al-~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~ 319 (2710)
T PRK14707 242 NELKPQE-LGNALNALSKWADTPVCAAAASALAERLVDDPGLRKAL-DPINVTQALNALSKWADLPVCAEAAIALAERLA 319 (2710)
T ss_pred HhCChHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhc-CHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHh
Confidence 4443334 444455444 3666565566655544333445454443 333456667777788888887777766665444
Q ss_pred CCCCCchhhhhchHHHHHHhc-cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHH
Q 015687 230 GKPQPLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~ 308 (402)
+++..........+...++.| +-+|..+...+..+|..-...+++..+.+--.|+-..|-.+-+-++..+...+...|.
T Consensus 320 ~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA 399 (2710)
T PRK14707 320 DDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALA 399 (2710)
T ss_pred ccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHH
Confidence 443333333333333344444 4466666666666665544344444443433344444444445566666666666666
Q ss_pred HhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHH
Q 015687 309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA 388 (402)
Q Consensus 309 nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 388 (402)
.-..+.++..+.+--.|+-..|..+-+-+ +..+...++..|.--..++.+-.+.+--.++...|-.+-+-+|..+...|
T Consensus 400 ~~l~~d~~l~~~~~~Q~van~lnalsKWP-d~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~a 478 (2710)
T PRK14707 400 EHVVDDLELRKGLDPQGVSNALNALAKWP-DLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQT 478 (2710)
T ss_pred HHhccChhhhhhcchhhHHHHHHHhhcCC-cchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHH
Confidence 65556666655444445555565666677 76777777777776666666655544434444333333344666666666
Q ss_pred HHHHH
Q 015687 389 AWAIS 393 (402)
Q Consensus 389 ~~aL~ 393 (402)
+..|.
T Consensus 479 a~~La 483 (2710)
T PRK14707 479 ASALA 483 (2710)
T ss_pred HHHHH
Confidence 65554
No 193
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.43 E-value=0.015 Score=46.69 Aligned_cols=148 Identities=20% Similarity=0.176 Sum_probs=100.9
Q ss_pred ChHHHHHHhcc-chhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHH
Q 015687 200 ALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 278 (402)
Q Consensus 200 ~i~~L~~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 278 (402)
.++.++..+.. ...++++..+.-++..+... ........+-+.+...+...+.+-...++.++..+-...++....
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~---~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLLDA---AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 45566666644 56777888888888877411 111222334445555556555667778888888888887776665
Q ss_pred HH-HhCcHHHHHHhcC--CCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchh-HHHHHHHHHHH
Q 015687 279 VI-EAGVCPRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS-IKKEACWTISN 352 (402)
Q Consensus 279 ~~-~~~~i~~L~~~L~--~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~-v~~~a~~~L~n 352 (402)
++ ..|+.+.+.++.. ..+..++..++.+|..-|. .. .....+...+++.|-.+++.+.++. +|..|+-+|+-
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~-~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DK-SCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SH-HHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cH-HHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 55 5589999999998 7788899999999977664 33 3444555578999999996553566 88888777753
No 194
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=96.36 E-value=0.18 Score=46.60 Aligned_cols=275 Identities=18% Similarity=0.155 Sum_probs=143.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC-CCHHHHHHHHHHH-HHhhCCCchhhH
Q 015687 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWAL-GNVAGDSPKCRD 193 (402)
Q Consensus 116 i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L-~nl~~~~~~~~~ 193 (402)
+..+++=|.++....+|..++--|+.-+.+ ++++..+..+|.+..++..+.+ ++..+...++.++ .-++.+.+ .-.
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence 556666666444468888888888887774 9999999999999999998854 4443444444444 44444443 334
Q ss_pred HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCch-hhhhchHHHHHHhcc---------CCChhHHHHHHH
Q 015687 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF-EQTRPALPALERLIH---------SNDDEVLTDACW 263 (402)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~L~~lL~---------~~~~~v~~~a~~ 263 (402)
.+.+.+....++.++.-........... .. ..... .........+.+.+. +....-+..++.
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~--~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall 172 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SS--RKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALL 172 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchh------hh--hhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHH
Confidence 4445555555566663000000000000 00 00000 000111111111110 011112223333
Q ss_pred HHHHhc--------------cCChHHHHHHHHhCcHHHHHHhcC----CC-------C-----hhhHHHHHHHHHHhhcC
Q 015687 264 ALSYLS--------------DGTNDKIQAVIEAGVCPRLVELLR----HP-------S-----PSVLIPALRTVGNIVTG 313 (402)
Q Consensus 264 ~l~~l~--------------~~~~~~~~~~~~~~~i~~L~~~L~----~~-------~-----~~v~~~a~~~l~nl~~~ 313 (402)
++-.++ ...+...+.+...|+++.++..+. .. . ......++++|-+.+..
T Consensus 173 ~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~ 252 (361)
T PF07814_consen 173 ALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFL 252 (361)
T ss_pred HHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhc
Confidence 333321 112223345666788888888874 11 1 12446688888888776
Q ss_pred ChHHHHHHHhC--CChHHHHHH-hcCC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh-------c---
Q 015687 314 DDMQTQCIINH--QALPCLLDL-LTQN--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-------L--- 378 (402)
Q Consensus 314 ~~~~~~~i~~~--~~l~~L~~l-l~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-------~--- 378 (402)
+.......+.. +.++.+... +... ....+...++.++.|++.++|+....+...++...+..+. .
T Consensus 253 ~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~ 332 (361)
T PF07814_consen 253 SEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPN 332 (361)
T ss_pred CccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccc
Confidence 66554445433 333333332 2222 0334457888999999998877766665543322221111 1
Q ss_pred ----cCCHHHHHHHHHHHHHhhcCCC
Q 015687 379 ----NAEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 379 ----~~~~~v~~~a~~aL~nl~~~~~ 400 (402)
....+...-++.++.|++.+..
T Consensus 333 ~~~~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 333 YVPEESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred cccccccchHHHHHHHhHHHheeeCc
Confidence 1335788889999999998764
No 195
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.35 E-value=0.13 Score=49.96 Aligned_cols=174 Identities=18% Similarity=0.163 Sum_probs=119.7
Q ss_pred hhcCCCHHHHHHHHHHHHH--HhccCCCCchhHHhhcCcHHHHHHhhcC----CCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 79 GVWSDDRNIQLDATTQFRK--LLSIERSPPINEVIQSGVVPRFIEFLSR----DDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 79 ~l~s~~~~~~~~a~~~l~~--l~s~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
.+...+++....|...++. ++-++ .-+-+.+-|...+...+ ++ +.+|..|.-+|..+..-+.++..
T Consensus 861 ~IggtsEddf~da~~fikE~ElLyGe------ksvLs~F~pvVeE~csn~~~~sd-~~lq~aA~l~L~klMClS~~fc~- 932 (1128)
T COG5098 861 RIGGTSEDDFVDAFFFIKEKELLYGE------KSVLSNFKPVVEEGCSNSSRFSD-EELQVAAYLSLYKLMCLSFEFCS- 932 (1128)
T ss_pred hccCCCHHHHHHHHHHHHHHHHhhch------hHHHhhhhHHHHHHhccccccCC-HHHHHHHHHHHHHHHHHhHHHHH-
Confidence 4444445555555554442 33332 11123345555666655 44 89999999999887765444433
Q ss_pred HHhCCchHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 153 VIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
.-+|.|+..++ +++|.+|..|+-.||-++..-....+. .-..|.+.| .+.+..+++.+..++.+|.-..
T Consensus 933 ----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLyrrL-~De~~~V~rtclmti~fLilag 1002 (1128)
T COG5098 933 ----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLYRRL-GDEDADVRRTCLMTIHFLILAG 1002 (1128)
T ss_pred ----HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc
Confidence 35899999887 799999999999999887543322222 345677777 7788999999999999998653
Q ss_pred CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChH
Q 015687 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 274 (402)
Q Consensus 232 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~ 274 (402)
...+.|-++.++.+|.++|.++..-|=..+..++..+..
T Consensus 1003 ----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt 1041 (1128)
T COG5098 1003 ----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNT 1041 (1128)
T ss_pred ----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccc
Confidence 234578899999999999999887777777777765543
No 196
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.33 E-value=0.041 Score=44.25 Aligned_cols=146 Identities=10% Similarity=0.086 Sum_probs=90.3
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHH
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (402)
+++.|+++|+.+.+..++.+++++|+.|..-+|...+.+... .+.- .-...+...........+ .... .+.
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~--~~~~~~~~~~~~~l~~~~-~~~~----~ee 81 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSK--SSENSNDESTDISLPMMG-ISPS----SEE 81 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCcc--ccccccccchhhHHhhcc-CCCc----hHH
Confidence 578889999887668999999999999988756544322221 1100 001112222222222111 1111 123
Q ss_pred HHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhc
Q 015687 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (402)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~ 269 (402)
..-..++..|+..|++..-..-...+..++.++..........+...++|.++..+++.++..++..++-|+.+.
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 333446788899885544444555677777777765544557778899999999998877788888777776654
No 197
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.14 E-value=0.73 Score=43.43 Aligned_cols=259 Identities=14% Similarity=0.133 Sum_probs=146.8
Q ss_pred HHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC-C
Q 015687 91 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-P 169 (402)
Q Consensus 91 a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~ 169 (402)
.-..|..++......+.+..++..++..|+.++.++| +.-|...-.+|..+-......+..+.. .+...|.+++.. .
T Consensus 110 vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~ 187 (409)
T PF01603_consen 110 VYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETE 187 (409)
T ss_dssp HHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcc
Confidence 3445555554332222445677788999999999999 899999999999988766666666654 466677777663 4
Q ss_pred CHHHHHHHHHHHHHhhCCCc-hhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHH
Q 015687 170 TDDVREQAVWALGNVAGDSP-KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 248 (402)
Q Consensus 170 ~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ 248 (402)
...-...++..++.+..+-. ..+..-.. =....++.+.....-.........++..++..+|.. ...++..+++
T Consensus 188 ~~~gI~elLeil~sii~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l----~~~~i~~llk 262 (409)
T PF01603_consen 188 RHNGIAELLEILGSIINGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSL----AEPVIKGLLK 262 (409)
T ss_dssp --STHHHHHHHHHHHHTT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGG----HHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh----HHHHHHHHHH
Confidence 44455677888888876522 22222111 012233444422233344555666666666554321 1223333333
Q ss_pred hccCCChhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhC---
Q 015687 249 LIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH--- 324 (402)
Q Consensus 249 lL~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~--- 324 (402)
.--..+..-..-.+.-+..+...-+ .... -+...++..+...+.+++..|.+.|+....|- ....++..
T Consensus 263 ~WP~t~s~Kev~FL~el~~il~~~~~~~f~-~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~------~~~~li~~~~~ 335 (409)
T PF01603_consen 263 HWPKTNSQKEVLFLNELEEILEVLPPEEFQ-KIMVPLFKRLAKCISSPHFQVAERALYFWNNE------YFLSLISQNSR 335 (409)
T ss_dssp HS-SS-HHHHHHHHHHHHHHHTT--HHHHH-HHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSH------HHHHHHHCTHH
T ss_pred hCCCCCchhHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCH------HHHHHHHhChH
Confidence 3333444434444455555554322 2222 22234677888888999999999888776442 22223322
Q ss_pred CChHHHHHHhcCC----CchhHHHHHHHHHHHHhcCCHHHHHH
Q 015687 325 QALPCLLDLLTQN----YKKSIKKEACWTISNITAGNVNQIQA 363 (402)
Q Consensus 325 ~~l~~L~~ll~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~ 363 (402)
.++|.+..-|... =+..|+..|..++.-+..-+++.-..
T Consensus 336 ~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 336 VILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp HHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 3677777766432 15689999999999998877775444
No 198
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=96.07 E-value=0.19 Score=50.88 Aligned_cols=197 Identities=13% Similarity=0.102 Sum_probs=136.8
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhh
Q 015687 160 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239 (402)
Q Consensus 160 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 239 (402)
+.|..-+.+.+..-|-.|+..+.-+..... .....-..|.+..++.....+.+..+...++.+|..++..-......+.
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 334444556777778888888887776654 1112222345556666666778888999999999999988655566667
Q ss_pred hchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChH-HH
Q 015687 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM-QT 318 (402)
Q Consensus 240 ~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~-~~ 318 (402)
...+|.+++.+......++..+..++-.++....- ....+.+...+.+.++.++..+...+.......+. ..
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 88899999999888887777776666555532211 12467788899999999999988888888765541 11
Q ss_pred HHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHH
Q 015687 319 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAII 365 (402)
Q Consensus 319 ~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~ 365 (402)
..---.+++|.++....+. +..||..|.-+++-+.. +..+.+..++
T Consensus 408 ~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L 454 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMKVHGEEVFKKLL 454 (815)
T ss_pred chhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1112237788999999888 99999999999998775 3344344333
No 199
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.93 E-value=0.23 Score=48.35 Aligned_cols=258 Identities=13% Similarity=0.152 Sum_probs=160.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHH
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 153 (402)
-.++..++..+.+.+..-...|...+. ..-+.++...+++.|+..+.-++...-....+.-++..... .+
T Consensus 257 ~~fLeel~lks~~eK~~Ff~~L~~~l~----~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~-~e----- 326 (690)
T KOG1243|consen 257 LLFLEELRLKSVEEKQKFFSGLIDRLD----NFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDE-EE----- 326 (690)
T ss_pred HHHHHhcccCcHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccc-cc-----
Confidence 455556666666666665555555332 12234555667777777776554111122222333333332 22
Q ss_pred HhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCC
Q 015687 154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 233 (402)
Q Consensus 154 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 233 (402)
...+++|.|++++.+++..+|-..+.-+-+.. +...+.+++..+++.+..-+ .++++.++...+.++..|+.--..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i---~~Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI---DHLTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHh---hhcCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhch
Confidence 55689999999999999999955554444443 33445667777888888888 788899999998888888754321
Q ss_pred CchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCc-HHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 015687 234 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV-CPRLVELLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 234 ~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~-i~~L~~~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
. ......+..+..+=.+++..++.+..-+++.++....... ..++ ......-+.++-..-|..+...+.....
T Consensus 403 ~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 403 R--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred h--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 1 2224455566555556678899988888888876543221 2333 2333344666666778888777766655
Q ss_pred CChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 313 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 313 ~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
..+. .-+...++|.+..+.-++ +..+|..|..++.....
T Consensus 477 ~~~~---~~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 477 YFDQ---SEVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFLE 515 (690)
T ss_pred ccch---hhhhhhccccccccccCc-ccchhhHHHHHHHHHHh
Confidence 4332 123447888888888887 78888877777665543
No 200
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.90 E-value=0.58 Score=45.87 Aligned_cols=137 Identities=15% Similarity=0.196 Sum_probs=96.4
Q ss_pred hhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-CCCChhhHHHHHHHHHHhhcCC
Q 015687 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGD 314 (402)
Q Consensus 236 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L-~~~~~~v~~~a~~~l~nl~~~~ 314 (402)
......++|.|...+++.+..+++.++..+..+++.-+. ..+..-++|++-.+. .+.+..++..++-|++.++..-
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l 460 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL 460 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH
Confidence 344577889888999999999999999999988866552 255566788887764 5677899999999999998322
Q ss_pred hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCC
Q 015687 315 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE 381 (402)
Q Consensus 315 ~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 381 (402)
+ ...++ ..+..+.+..+.. +|.+......+..++....+.. ..++...++|.++-+...+.
T Consensus 461 D--~~~v~--d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 461 D--KAAVL--DELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred H--HHHhH--HHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence 2 11122 2355566666677 8888888888877777643332 33444568888887766544
No 201
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.89 E-value=1.1 Score=39.32 Aligned_cols=218 Identities=15% Similarity=0.163 Sum_probs=127.3
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhhHHHH
Q 015687 119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVL 196 (402)
Q Consensus 119 L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 196 (402)
|=..|.+++ +.+|..|+.+|+.+...-+... ....-+..|+.++.+ .|......++.++..|.....-.....
T Consensus 4 Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~- 78 (262)
T PF14500_consen 4 LGEYLTSED-PIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA- 78 (262)
T ss_pred hhhhhCCCC-HHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH-
Confidence 445677877 8999999999998877544221 222335666665543 455555566777777764332111111
Q ss_pred hcCChHHHHHHhc-cchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccC-CChhHHHHHHHHHHHhccCChH
Q 015687 197 SNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTND 274 (402)
Q Consensus 197 ~~g~i~~L~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~~ 274 (402)
..++..+..... +......+..+...+..+.......-......++..+++.+.. .||.-...+...+..+...-+-
T Consensus 79 -~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 79 -VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred -HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 112333332221 1224556777778888777664222222335667777777755 4888888887777776543321
Q ss_pred HHHHHHHhCcHHHHHHhcC--------C-C-Ch--hhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhH
Q 015687 275 KIQAVIEAGVCPRLVELLR--------H-P-SP--SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSI 342 (402)
Q Consensus 275 ~~~~~~~~~~i~~L~~~L~--------~-~-~~--~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v 342 (402)
....+.+.+.+. . + ++ -.++.--..|.+....++... .-.+|.|+.-|.++ .+.+
T Consensus 158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~-~~~~ 224 (262)
T PF14500_consen 158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDST-SPSV 224 (262)
T ss_pred -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCC-CcHH
Confidence 122233333331 1 1 21 234444555555555556433 36789999999999 8899
Q ss_pred HHHHHHHHHHHhc
Q 015687 343 KKEACWTISNITA 355 (402)
Q Consensus 343 ~~~a~~~L~nl~~ 355 (402)
|..+..+|...+.
T Consensus 225 K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 225 KLDSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998775
No 202
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=95.88 E-value=0.29 Score=45.22 Aligned_cols=143 Identities=17% Similarity=0.174 Sum_probs=84.2
Q ss_pred HHHHHHhccCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc---CCCChhhHHHHHHHHHHhhcCChH--
Q 015687 243 LPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL---RHPSPSVLIPALRTVGNIVTGDDM-- 316 (402)
Q Consensus 243 l~~L~~lL~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L---~~~~~~v~~~a~~~l~nl~~~~~~-- 316 (402)
.+.+-.-+..+ ...-+..|+..+..++..-......++. +.+..++.-. .+.++.-+..|++.++.++.....
T Consensus 212 ~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~ 290 (370)
T PF08506_consen 212 EEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTK 290 (370)
T ss_dssp HHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BT
T ss_pred HHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhcccc
Confidence 33344444333 3446777888888887543322221211 1222222211 234677888999999999875531
Q ss_pred ----------HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHH
Q 015687 317 ----------QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK 386 (402)
Q Consensus 317 ----------~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 386 (402)
+...++...++|-|. - ..+..|-++..|++.+..+-..-+. +.+. +++|.++..|.+++.-|..
T Consensus 291 ~Gvt~~~~~v~v~~Ff~~~v~peL~-~-~~~~~piLka~aik~~~~Fr~~l~~--~~l~--~~~~~l~~~L~~~~~vv~t 364 (370)
T PF08506_consen 291 SGVTQTNELVDVVDFFSQHVLPELQ-P-DVNSHPILKADAIKFLYTFRNQLPK--EQLL--QIFPLLVNHLQSSSYVVHT 364 (370)
T ss_dssp TB-S-B-TTS-HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-H--HHHH--HHHHHHHHHTTSS-HHHHH
T ss_pred CCcccccccccHHHHHHHHhHHHhc-c-cCCCCcchHHHHHHHHHHHHhhCCH--HHHH--HHHHHHHHHhCCCCcchhh
Confidence 234555666777666 1 2223788999999999988764332 1222 2789999999999999999
Q ss_pred HHHHHH
Q 015687 387 EAAWAI 392 (402)
Q Consensus 387 ~a~~aL 392 (402)
.|+.++
T Consensus 365 yAA~~i 370 (370)
T PF08506_consen 365 YAAIAI 370 (370)
T ss_dssp HHHHHH
T ss_pred hhhhhC
Confidence 998875
No 203
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=95.88 E-value=1.1 Score=39.41 Aligned_cols=225 Identities=13% Similarity=0.135 Sum_probs=141.7
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHh--cCChHHHHHHhccch-hhHHHHHHHHHHHHh
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS--NGALMPLLAQFNEHA-KLSMLRNATWTLSNF 227 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~--~g~i~~L~~~l~~~~-~~~~~~~a~~~L~~l 227 (402)
+.+.++|....|++.+...+-+-+.-++....|+-...-+.|....+ ..-.+.+-.++.... .+++.-++...|...
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEc 152 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLREC 152 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 34667789999999998888788878888888775433222222111 012233333332222 256666666666666
Q ss_pred hhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCc---HHH-HHHhcCCCChhhHHHH
Q 015687 228 CRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV---CPR-LVELLRHPSPSVLIPA 303 (402)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~---i~~-L~~~L~~~~~~v~~~a 303 (402)
.++..-.........+.......+.+.-++..+|..+...+.......+..++..+. ++. --.++.+++.-.+..+
T Consensus 153 irhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs 232 (342)
T KOG1566|consen 153 IRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQS 232 (342)
T ss_pred HhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHH
Confidence 665433333333455556666667777788899999888876554444444554433 233 5556788888889999
Q ss_pred HHHHHHhhcCCh---HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC--CHHHHHHHH-HcCCHHHHHHHh
Q 015687 304 LRTVGNIVTGDD---MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG--NVNQIQAII-EAGIIGPLVNLL 377 (402)
Q Consensus 304 ~~~l~nl~~~~~---~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~-~~~~i~~L~~ll 377 (402)
+..+|.+..+.+ .-++++-+..-+..++.+|..+ +..++-+|..+..-..+. .+.-+..++ .+ =+.|++++
T Consensus 233 ~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvAnpnK~q~V~~IL~~N--r~KLl~~l 309 (342)
T KOG1566|consen 233 LKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVANPNKPQPVRDILVRN--RPKLLELL 309 (342)
T ss_pred HHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhcCCCCCchHHHHHHhC--cHHHHHHH
Confidence 999999987554 2344444556788999999998 899999999988877773 333333333 32 24455554
Q ss_pred c
Q 015687 378 L 378 (402)
Q Consensus 378 ~ 378 (402)
.
T Consensus 310 ~ 310 (342)
T KOG1566|consen 310 H 310 (342)
T ss_pred H
Confidence 3
No 204
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.87 E-value=1.4 Score=44.76 Aligned_cols=238 Identities=17% Similarity=0.190 Sum_probs=138.0
Q ss_pred hcCcHHHHHHhhcCCC----CHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhC----CCC----HHHHHHHHH
Q 015687 112 QSGVVPRFIEFLSRDD----FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS----SPT----DDVREQAVW 179 (402)
Q Consensus 112 ~~g~i~~L~~lL~~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~----~~~----~~v~~~a~~ 179 (402)
+.|++..+++++.+-. ...+....+..|...+.. +.+++.+++.|+++.|+..+. ... .++.+..+.
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 4677888888887532 135556667777777765 899999999999999998774 333 678888888
Q ss_pred HHHHhhCCCchhhH----HHHhc--------CChHHHHHHhccc---hhhHHHHHHHHHHHHhhhCCCCCchhhhhchHH
Q 015687 180 ALGNVAGDSPKCRD----LVLSN--------GALMPLLAQFNEH---AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 244 (402)
Q Consensus 180 ~L~nl~~~~~~~~~----~~~~~--------g~i~~L~~~l~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~ 244 (402)
++-.+..+...... ..... ..+..+++.+... .++.+....+.+|-+|+.+.+......+..+-|
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~p 273 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFKP 273 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHH
Confidence 77777643321100 00111 1266666666432 368889999999999998864332222222222
Q ss_pred HHHHhcc-----CCChhHHHHHHHHHHHhcc----C--ChHHHHHHHHhCcHHHHHHhcCCC--------Chh-------
Q 015687 245 ALERLIH-----SNDDEVLTDACWALSYLSD----G--TNDKIQAVIEAGVCPRLVELLRHP--------SPS------- 298 (402)
Q Consensus 245 ~L~~lL~-----~~~~~v~~~a~~~l~~l~~----~--~~~~~~~~~~~~~i~~L~~~L~~~--------~~~------- 298 (402)
.+ ++=. ..+..+. +.+++.++. . .....+.+++.|++...+.+|... ++.
T Consensus 274 ~l-~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ 349 (802)
T PF13764_consen 274 YL-DFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSR 349 (802)
T ss_pred hc-ChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcC
Confidence 22 1111 1122222 333344332 2 135567788999999998887321 111
Q ss_pred -hHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 299 -VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 299 -v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
-...+++.|.-++.+.. .++..+..++++.+..+=+.+.+..|=.-|=.+|-.+..
T Consensus 350 psLp~iL~lL~GLa~gh~-~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 350 PSLPYILRLLRGLARGHE-PTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred CcHHHHHHHHHHHHhcCH-HHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 23456777777777655 344556677776655554433233333333334434433
No 205
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=95.85 E-value=0.26 Score=45.70 Aligned_cols=194 Identities=17% Similarity=0.237 Sum_probs=121.5
Q ss_pred HHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHH---HhhhCCCCCchhhhhchHHHHHHhccC
Q 015687 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS---NFCRGKPQPLFEQTRPALPALERLIHS 252 (402)
Q Consensus 176 ~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~---~l~~~~~~~~~~~~~~~l~~L~~lL~~ 252 (402)
.|+.+|-.+....+..-..+.+.+++..+++.+. ..- ..++. +-..+...+. ........ ...+..
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~-~Ev-------~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~i~~ 71 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQ-YEV-------DFALEENKNEEAGSGIPP-EYKESSVD--GYSISY 71 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHH-HHH-------HHHHhcccccCCCCCCCC-Cccccccc--ccccCH
Confidence 4566666676666556677889999999999983 221 11111 1111110000 00000000 000111
Q ss_pred CChhHHHHHHHHHHHhcc---CChHHHHHHHH-hCcHHHHHHhcCCCC---hhhHHHHHHHHHHhhcCChHHHHHHHhCC
Q 015687 253 NDDEVLTDACWALSYLSD---GTNDKIQAVIE-AGVCPRLVELLRHPS---PSVLIPALRTVGNIVTGDDMQTQCIINHQ 325 (402)
Q Consensus 253 ~~~~v~~~a~~~l~~l~~---~~~~~~~~~~~-~~~i~~L~~~L~~~~---~~v~~~a~~~l~nl~~~~~~~~~~i~~~~ 325 (402)
.....+...++.+..+.. +..+....+++ ..++..|..++.+.. +.+-..|+.++..+....|.....+.+.|
T Consensus 72 ~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~G 151 (379)
T PF06025_consen 72 QRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAG 151 (379)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcC
Confidence 122334445555555544 34455555677 566777777777654 68889999999999999998888889999
Q ss_pred ChHHHHHHhc-CC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCC
Q 015687 326 ALPCLLDLLT-QN--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE 381 (402)
Q Consensus 326 ~l~~L~~ll~-~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 381 (402)
+.+.+++.+. .. .+.++-...--+++.||-+ ....+.+.+.+.++.+++++.+.+
T Consensus 152 l~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN-~~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 152 LIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN-NRGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred ChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC-HHHHHHHHhcChHHHHHHHhCCHH
Confidence 9999999887 33 2345555556677777764 667888889999999999987644
No 206
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.85 E-value=0.31 Score=45.87 Aligned_cols=233 Identities=14% Similarity=0.092 Sum_probs=137.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
+..|+..+.|+|+..+......+.++... .......+...+...|.+++.......-..+.+.+++.+..|..-....
T Consensus 135 i~~Ll~l~~S~D~rER~~lk~~l~~iy~k--~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~ 212 (409)
T PF01603_consen 135 IKKLLELFDSPDPRERDYLKTILHRIYGK--FPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKE 212 (409)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--H
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcH
Confidence 67888999999999999998999988653 4566677777778888998886654566778889999988864322212
Q ss_pred HHhCCchHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 153 VIDHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
....-....|+.|...+. .....+-..++..++..+|..... ++..+++.- ...+..-....+.-+..+...-
T Consensus 213 eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~llk~W-P~t~s~Kev~FL~el~~il~~~ 286 (409)
T PF01603_consen 213 EHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKGLLKHW-PKTNSQKEVLFLNELEEILEVL 286 (409)
T ss_dssp HHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHHHHHHS--SS-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhC-CCCCchhHHHHHHHHHHHHHhc
Confidence 111112344444555432 233455556666666555543222 233444444 3333333333444455555443
Q ss_pred CCCch-hhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhcCC-----CChhhHHH
Q 015687 232 PQPLF-EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRH-----PSPSVLIP 302 (402)
Q Consensus 232 ~~~~~-~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~~L~~-----~~~~v~~~ 302 (402)
+...+ .....++..+..++.+.+-.|.+.|+....| +.. -.++.. .+++.+.+-|.. =+..++..
T Consensus 287 ~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~-~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~ 360 (409)
T PF01603_consen 287 PPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYF-LSLISQNSRVILPIIFPALYRNSKNHWNQTVRNL 360 (409)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHH-HHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHH-HHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 32222 2336677788888899999998888755422 211 222222 256677776643 25689999
Q ss_pred HHHHHHHhhcCChHHHH
Q 015687 303 ALRTVGNIVTGDDMQTQ 319 (402)
Q Consensus 303 a~~~l~nl~~~~~~~~~ 319 (402)
|..++.-+...++...+
T Consensus 361 a~~vl~~l~~~d~~lf~ 377 (409)
T PF01603_consen 361 AQNVLKILMEMDPKLFD 377 (409)
T ss_dssp HHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHhCHHHHH
Confidence 99999988887765433
No 207
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.84 E-value=0.41 Score=48.55 Aligned_cols=185 Identities=15% Similarity=0.124 Sum_probs=128.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHH
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 153 (402)
+.+-..+.+.+...+..|+..+...++... ....-...|.+-.++.....+.+..+...|+.+|..|+..........
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence 344456668899999999999999987542 111122344555666655544447888999999999998655443333
Q ss_pred HhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC-
Q 015687 154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP- 232 (402)
Q Consensus 154 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~- 232 (402)
.. +.+|.|+.-+......+++.+..++-.++...+. ....+.++..+ .+.++.++..+...+....+...
T Consensus 334 ~~-~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~l-k~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 334 AK-NVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEAL-KGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred HH-hhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHh-cCCChhhHHHHHHHHHHHHhhcCC
Confidence 32 6789999999888888988888877766653221 11455666677 77888887776666655555432
Q ss_pred -CCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhc
Q 015687 233 -QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (402)
Q Consensus 233 -~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~ 269 (402)
.........++|.++....+.+.+|+..+..+++-+.
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 2333455788999999999999999999999887765
No 208
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.82 E-value=0.15 Score=44.03 Aligned_cols=101 Identities=17% Similarity=0.134 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHh
Q 015687 86 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL 165 (402)
Q Consensus 86 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 165 (402)
.....|+..|.-++-.. ++....+-+...+..|+++|.....+.++..++.+|..+.-+++.+...+-+.+++..++.+
T Consensus 106 ~li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 34555677777665443 45555677888999999999665448999999999999999999999999999999999999
Q ss_pred hCC--CCHHHHHHHHHHHHHhhCC
Q 015687 166 LSS--PTDDVREQAVWALGNVAGD 187 (402)
Q Consensus 166 L~~--~~~~v~~~a~~~L~nl~~~ 187 (402)
+++ .+.+++-.++..|.-...+
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHcc
Confidence 986 5778888888888776543
No 209
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.79 E-value=2 Score=41.42 Aligned_cols=249 Identities=15% Similarity=0.110 Sum_probs=136.5
Q ss_pred CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCH---HHHHHHHHHHHHhhcCCCcchHHHHhCCchH
Q 015687 84 DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFP---QLQFEAAWALTNIASGTSENTRVVIDHGAVP 160 (402)
Q Consensus 84 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~---~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 160 (402)
..+.+..+...+..++........ ... ..+.+.+.....+ ..+.+|+.+| +.+..+. ...+.++.+
T Consensus 42 p~e~R~~~~~ll~~~i~~~~~~~~--~~R----~~fF~~I~~~~~~~d~~~~l~aL~~L---T~~Grdi--~~~~~~i~~ 110 (464)
T PF11864_consen 42 PSEARRAALELLIACIKRQDSSSG--LMR----AEFFRDISDPSNDDDFDLRLEALIAL---TDNGRDI--DFFEYEIGP 110 (464)
T ss_pred CHHHHHHHHHHHHHHHHccccccH--HHH----HHHHHHHhcCCCchhHHHHHHHHHHH---HcCCcCc--hhcccchHH
Confidence 467888888888888765422111 111 1233333333213 3455555555 4443333 235667788
Q ss_pred HHHHhhCC---------------------------CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchh
Q 015687 161 IFVRLLSS---------------------------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAK 213 (402)
Q Consensus 161 ~L~~lL~~---------------------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~ 213 (402)
.|...+.. .+.......+..+.|+.+.+...-+.-.-.+.+..++.+.....+
T Consensus 111 ~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~ 190 (464)
T PF11864_consen 111 FLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSS 190 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCc
Confidence 88877631 122333455566666665544322222223456666666555555
Q ss_pred hHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC
Q 015687 214 LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR 293 (402)
Q Consensus 214 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~ 293 (402)
......+..++-.+.... ..+......++..|....... +....+-.++.||+...... ..+..|..+|.
T Consensus 191 ~~di~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~ 260 (464)
T PF11864_consen 191 EDDIEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILR 260 (464)
T ss_pred HHHHHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-------HHHHHHHHHHc
Confidence 556677777777666653 222233345555555553222 66667777888888544322 13566777773
Q ss_pred C------CChhhHHHHHHHHHHhhcCChHHHHHHHhC---CChHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 015687 294 H------PSPSVLIPALRTVGNIVTGDDMQTQCIINH---QALPCLLDLLTQNYKKSIKKEACWTISNIT 354 (402)
Q Consensus 294 ~------~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~---~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 354 (402)
+ .+..+..-|+..++.+..+..+....-+.. -+++.+...++.+ ++.+--+....+.++.
T Consensus 261 ~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 261 SPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLL 329 (464)
T ss_pred ccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHH
Confidence 2 234566788999999887763222212221 2677888888877 6666666666666666
No 210
>PRK14707 hypothetical protein; Provisional
Probab=95.78 E-value=3.6 Score=45.75 Aligned_cols=308 Identities=14% Similarity=0.077 Sum_probs=162.5
Q ss_pred cHHHHHHhhcC--CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 72 SLPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 72 ~i~~l~~~l~s--~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
+|-.+++.+.. +++.-+ .++..|...+..+ ..-...+-..|+-..|-.+-+-++.+.....+.++=..++.+ +..
T Consensus 206 ~ia~~lNa~sKWp~~~~c~-~aa~~la~~l~~~-~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~-~~l 282 (2710)
T PRK14707 206 GVATVLNALCKWPDTPDCG-NAVSALAERLADE-SRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDD-PGL 282 (2710)
T ss_pred HHHHHHHHHhcCCCChhHH-HHHHHHHHHHcCc-HHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhh-HHH
Confidence 45556666654 334333 4444454444433 233344444444444444445555344444444444556643 555
Q ss_pred hHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
++.+-..++-..|-.+-+-++..+...|...|..=..++++.+..+ +.-.+...++-|.+.+|..+-+.++.+|..=..
T Consensus 283 ~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~ 361 (2710)
T PRK14707 283 RKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLV 361 (2710)
T ss_pred HHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhc
Confidence 5544443433333334444777777777777766555666655443 334566777778788877777777666654443
Q ss_pred CCCCCchhh-hhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHH
Q 015687 230 GKPQPLFEQ-TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308 (402)
Q Consensus 230 ~~~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~ 308 (402)
.++...... ..++-..|..+-+-++..+...+...|..=...+.+..+.+-..|+-..|-.+-+-++..+...+...+.
T Consensus 362 ~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA 441 (2710)
T PRK14707 362 ADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALA 441 (2710)
T ss_pred cCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHH
Confidence 333222222 2333334433335577777777777776544455555444444455455555556677666666666666
Q ss_pred HhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHH
Q 015687 309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 384 (402)
Q Consensus 309 nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 384 (402)
--...+.+..+.+--.++...|..+-+-+ +..+..+++-.|..=..+.++..+.+--.++...|-.+=+.++...
T Consensus 442 ~~la~d~~l~~~~~p~~va~~LnalSKWP-d~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~ 516 (2710)
T PRK14707 442 GRLAHDTELCKALDPINVTQALDALSKWP-DTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPI 516 (2710)
T ss_pred HHHhccHHHHhhcChHHHHHHHHHhhcCC-CChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHH
Confidence 55555554444333334444555555666 6666666666665444444554444433444444444444455433
No 211
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=95.74 E-value=1.3 Score=39.05 Aligned_cols=201 Identities=12% Similarity=0.097 Sum_probs=139.8
Q ss_pred HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCc---hhhh---hchHHHHHHhccCCChhHHHHHHHHHH
Q 015687 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL---FEQT---RPALPALERLIHSNDDEVLTDACWALS 266 (402)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~---~~~l~~L~~lL~~~~~~v~~~a~~~l~ 266 (402)
..+.+.|.+..++..+ ...+-+.+..++..+.++-+...... ..+. ...++.|+..-.. .+++.-.+-..+.
T Consensus 73 qef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR 150 (342)
T ss_pred HHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence 4566788889999988 77788888999999999987752221 1222 3444455444111 2555444444444
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCC----hHHHHHHhcCCCchhH
Q 015687 267 YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQA----LPCLLDLLTQNYKKSI 342 (402)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~----l~~L~~ll~~~~~~~v 342 (402)
....+ +.....+..+.-+.....++..+.-++...|..+...+.+........++..+. .++--.++.++ +.-+
T Consensus 151 Ecirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvt 228 (342)
T KOG1566|consen 151 ECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVT 228 (342)
T ss_pred HHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceeh
Confidence 44433 334456777777888888888888899999999999988776666666665433 34466788888 9999
Q ss_pred HHHHHHHHHHHhcC--CHHHHHHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 343 KKEACWTISNITAG--NVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 343 ~~~a~~~L~nl~~~--~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
+..+...++.+..+ +.......+ +..-+..+..+|.++...+|.+|-....-.+.
T Consensus 229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvA 286 (342)
T KOG1566|consen 229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVA 286 (342)
T ss_pred HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhc
Confidence 99999999998863 444444444 45678999999999999999999876654443
No 212
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.68 E-value=0.12 Score=41.41 Aligned_cols=144 Identities=19% Similarity=0.165 Sum_probs=95.2
Q ss_pred HHHHHhcc--CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHH
Q 015687 244 PALERLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCI 321 (402)
Q Consensus 244 ~~L~~lL~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i 321 (402)
+.++..|. ...++++..+.-++..+-+.. ..-...-+-+.+-..+...+.+-...++.++..+-.+.++....+
T Consensus 6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~----~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 6 DTLLTSLDMLRQPEEVRSHALVILSKLLDAA----REEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CHHHHHHHCTTTSCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHhcccCCCHhHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 34444443 467788888888888774211 112222233444445555555567788899999998888777666
Q ss_pred H-hCCChHHHHHHhc--CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhc-cCCHH-HHHHHHHHHHH
Q 015687 322 I-NHQALPCLLDLLT--QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFE-IKKEAAWAISN 394 (402)
Q Consensus 322 ~-~~~~l~~L~~ll~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~-v~~~a~~aL~n 394 (402)
+ ..|+++.+..++. +. +..+...++-+|+.-|. +...+..+.++ +++.|-+.+. +++.. +|..|+-+|+.
T Consensus 82 ~~~eg~~~~l~~~~~~~~~-~~~~~~~~lell~aAc~-d~~~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSK-DRKVQKAALELLSAACI-DKSCRTFISKN-YVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS--HHHHHHHHHHHHHHTT-SHHHHHCCHHH-CHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHc-cHHHHHHHHHH-HHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 5 6699999999998 55 77777777777775554 45555555544 8899999995 45555 78888887764
No 213
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.61 E-value=0.28 Score=47.86 Aligned_cols=128 Identities=18% Similarity=0.167 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC
Q 015687 216 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 295 (402)
Q Consensus 216 ~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~ 295 (402)
+.+.++.++..+-..+ .....+.+.+..+++...+.|..|+..+|..|..+.+.... +...+-.++...+..-+.+.
T Consensus 62 Il~fla~fv~sl~q~d--~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~Dr 138 (892)
T KOG2025|consen 62 ILSFLARFVESLPQLD--KEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKDR 138 (892)
T ss_pred HHHHHHHHHHhhhccC--chhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhcc
Confidence 4444444444444332 22235678888888888899999999999999999874332 23334456677788888889
Q ss_pred ChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 015687 296 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (402)
Q Consensus 296 ~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 351 (402)
.+.||..|+.+|+.+=..+.+. +..+...+..+++++++++||+.|...+.
T Consensus 139 ep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 139 EPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred CchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 9999999999999986322111 12445677888877768899998755544
No 214
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.25 Score=46.94 Aligned_cols=122 Identities=18% Similarity=0.209 Sum_probs=86.6
Q ss_pred chHHHHHHh-ccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-CCChhhHHHHHHHHHHhhcCChHHH
Q 015687 241 PALPALERL-IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQT 318 (402)
Q Consensus 241 ~~l~~L~~l-L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~-~~~~~v~~~a~~~l~nl~~~~~~~~ 318 (402)
+++..+++. ..+.+.+|+..|+-+|+.+|..+.+ .+...+++|. +.+..||.....+||-.|.+...+.
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~ 621 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV 621 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH
Confidence 455566666 4667899999999999998866543 3456667664 5688999999999999998876432
Q ss_pred HHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCC
Q 015687 319 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAE 381 (402)
Q Consensus 319 ~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~ 381 (402)
.++.|-.++.+. ..-||+.|+-+++.|.. ++++-...+ .++...+.+++.+..
T Consensus 622 -------a~diL~~L~~D~-~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~Kh 675 (926)
T COG5116 622 -------ATDILEALMYDT-NDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIVDKH 675 (926)
T ss_pred -------HHHHHHHHhhCc-HHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHhhhh
Confidence 245666777777 88899999999998886 333321111 235666777776543
No 215
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.50 E-value=4.4 Score=43.50 Aligned_cols=81 Identities=12% Similarity=0.144 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHHhhcCCh-----------HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015687 298 SVLIPALRTVGNIVTGDD-----------MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 366 (402)
Q Consensus 298 ~v~~~a~~~l~nl~~~~~-----------~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 366 (402)
......++++|-++...+ .+....+..+++..|.-+.... +..+|..|.-.++.+|..+|. .+.+
T Consensus 1187 p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~-~~~lR~~al~~Lg~~ci~hp~---l~~~ 1262 (1692)
T KOG1020|consen 1187 PKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDK-DGELRRKALINLGFICIQHPS---LFTS 1262 (1692)
T ss_pred HHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhCch---hhhh
Confidence 456678899999987322 1112234557777888888887 889999999999999985554 3334
Q ss_pred cCCHHHHHHHhccCCH
Q 015687 367 AGIIGPLVNLLLNAEF 382 (402)
Q Consensus 367 ~~~i~~L~~ll~~~~~ 382 (402)
..+...+...|.+.+.
T Consensus 1263 ~~v~nly~~ila~~n~ 1278 (1692)
T KOG1020|consen 1263 REVLNLYDEILADDNS 1278 (1692)
T ss_pred HHHHHHHHHHHhhhcc
Confidence 4455555666665443
No 216
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.42 E-value=0.53 Score=45.95 Aligned_cols=187 Identities=11% Similarity=0.062 Sum_probs=125.4
Q ss_pred HhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHH
Q 015687 196 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK 275 (402)
Q Consensus 196 ~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~ 275 (402)
+..++++.|++++ ...|..++-..+.-+-....+ -........++|.+...+.+.++.+++.++.++..++..-..+
T Consensus 327 yq~~i~p~l~kLF-~~~Dr~iR~~LL~~i~~~i~~--Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLF-KSPDRQIRLLLLQYIEKYIDH--LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred cccchhhhHHHHh-cCcchHHHHHHHHhHHHHhhh--cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 4566899999999 777888877766655555544 3334455789999999999999999999999998887543322
Q ss_pred HHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 276 IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 276 ~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
.+....+..+..+-.++...+|.....|+|.+........ .+.-..-.+.+-+.++ -..-|..+.|.+.....
T Consensus 404 ---~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdp-f~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 404 ---NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDP-FVPARKAGVLALAATQE 476 (690)
T ss_pred ---hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCC-CCCchhhhhHHHhhccc
Confidence 2222233444444445667899999999999987644322 2222233444556666 56678888888886655
Q ss_pred CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 356 GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 356 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
.-+ +.=+...++|.++-+.-+.+..++..|-.++..+
T Consensus 477 ~~~---~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 477 YFD---QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred ccc---hhhhhhhccccccccccCcccchhhHHHHHHHHH
Confidence 211 1122344788888888888888888777776544
No 217
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.31 E-value=0.064 Score=36.45 Aligned_cols=66 Identities=20% Similarity=0.334 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcC
Q 015687 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNG 199 (402)
Q Consensus 132 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g 199 (402)
...|+|+++++++. +.....+.+.++++.++++.. ++...+|-.|.++|+-++.... ..+.+.+.|
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~-G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEE-GAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHH-HHHHHHHcC
Confidence 56799999999984 666666667899999999887 5788999999999998886655 345554443
No 218
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.25 E-value=0.19 Score=41.62 Aligned_cols=81 Identities=19% Similarity=0.125 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHh--Cc--HHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHh---CCCh
Q 015687 255 DEVLTDACWALSYLSDGTNDKIQAVIEA--GV--CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN---HQAL 327 (402)
Q Consensus 255 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~--i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~---~~~l 327 (402)
..-.......++|++.....+ +.+++. +. +..|+.++.+.+..-|.-++.+|.|+|...+.... ++. .+++
T Consensus 72 ~~~~~yla~vl~NlS~~~~gR-~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~-LL~~~~~~iL 149 (192)
T PF04063_consen 72 KDNYDYLASVLANLSQLPEGR-QFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEW-LLSDDEVDIL 149 (192)
T ss_pred CcchhHHHHHHHHhcCCHHHH-HHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHH-hcCchhhhhH
Confidence 444567778889999766644 556654 34 78899999988777778899999999997765533 443 3677
Q ss_pred HHHHHHhcCC
Q 015687 328 PCLLDLLTQN 337 (402)
Q Consensus 328 ~~L~~ll~~~ 337 (402)
|.|+--|..+
T Consensus 150 p~LLlPLaGp 159 (192)
T PF04063_consen 150 PYLLLPLAGP 159 (192)
T ss_pred HHHHhhccCC
Confidence 7777776644
No 219
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=95.25 E-value=2.7 Score=39.45 Aligned_cols=229 Identities=14% Similarity=0.112 Sum_probs=130.2
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCc--hhHHhhcCcHHHHHHhhcCCC----CH--HHHHHHHHHHHHhhcC
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP--INEVIQSGVVPRFIEFLSRDD----FP--QLQFEAAWALTNIASG 145 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~--~~~~~~~g~i~~L~~lL~~~~----~~--~~~~~a~~~L~~l~~~ 145 (402)
..+...+...+.+.++.|+....+++.+.+-.. .+.+.+.-+.+.+-+++.+.+ .+ -.+..++.+|+-.|..
T Consensus 14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 456666777788899999999999987653222 334677777888888887642 22 2344556677777765
Q ss_pred CCcch--HHHHhCCchHHHHHhhCC-CC------HHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccch---h
Q 015687 146 TSENT--RVVIDHGAVPIFVRLLSS-PT------DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA---K 213 (402)
Q Consensus 146 ~~~~~--~~~~~~g~i~~L~~lL~~-~~------~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~---~ 213 (402)
++.. ..++ ..||.|..+++. .+ ..+.+-+..+|..++...+. ...++..|+++.+.++-.-.. |
T Consensus 94 -pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~~~~d 169 (698)
T KOG2611|consen 94 -PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPDGSHD 169 (698)
T ss_pred -hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCCCchh
Confidence 4332 3344 469999998874 22 33788899999999988664 567788999999987652211 2
Q ss_pred hHHHHHHHHHHHHhhhC-C-CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCCh-------HH---HHHHHH
Q 015687 214 LSMLRNATWTLSNFCRG-K-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-------DK---IQAVIE 281 (402)
Q Consensus 214 ~~~~~~a~~~L~~l~~~-~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~-------~~---~~~~~~ 281 (402)
..+ +.-.+.-+... . -.........++..+..-+...+.......|..|..+..... .. ...-..
T Consensus 170 ~al---al~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~ 246 (698)
T KOG2611|consen 170 MAL---ALKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLR 246 (698)
T ss_pred HHH---HHHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHH
Confidence 221 11111111111 1 111111112234444444455566677778888874432221 11 011122
Q ss_pred hCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 015687 282 AGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 282 ~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
.|+...|-.-+ .+.-+.+|+....|+..
T Consensus 247 ~G~~~IL~~kv---~p~qr~pAL~Laa~~~h 274 (698)
T KOG2611|consen 247 TGVVAILQNKV---APSQRLPALILAANMMH 274 (698)
T ss_pred HHHHHHHhccc---CchhcChHHHHHHHHHH
Confidence 34433333333 34446677777766654
No 220
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.22 E-value=2.9 Score=41.15 Aligned_cols=106 Identities=18% Similarity=0.154 Sum_probs=79.1
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhh
Q 015687 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (402)
Q Consensus 113 ~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (402)
.|++..++....+.+ ..+++.++.+|..+.....+ ....+-.++...+..=+.+..+.||.+|+.+|..+=++...-
T Consensus 84 ~~~f~hlLRg~Eskd-k~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKD-KKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE- 160 (892)
T ss_pred HHHHHHHHhcccCcc-hhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC-
Confidence 456777777777777 89999999999998874333 333343477777777777888999999999999997543221
Q ss_pred HHHHhcCChHHHHHHhccchhhHHHHHHHHHHH
Q 015687 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS 225 (402)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~ 225 (402)
+..+...+..++..++++++++.++..+.
T Consensus 161 ----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 ----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred ----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 23367788888888899999998875544
No 221
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=95.14 E-value=1.1 Score=44.92 Aligned_cols=196 Identities=16% Similarity=0.118 Sum_probs=111.2
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC----CCHHHHHHHHHHHHHhhC----
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS----PTDDVREQAVWALGNVAG---- 186 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~---- 186 (402)
.+..+.+++.+.. ---..|+..|..+......-... .+..+..++.+ .++.++..|+-+++.+..
T Consensus 396 av~~i~~~I~~~~--~~~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKK--LTDDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT---S-HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC--CCHHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 4666777777754 12334555565555432233332 35555556654 467788888888888863
Q ss_pred CC-----chhhHHHHhcCChHHHHHHhc---cchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCC---Ch
Q 015687 187 DS-----PKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN---DD 255 (402)
Q Consensus 187 ~~-----~~~~~~~~~~g~i~~L~~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~---~~ 255 (402)
.. ............++.+...+. ...+..-+..++.+|.|+-.. ..++.+.+++... +.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-H
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccch
Confidence 21 001122223346777777774 234557778889999998643 6788888888766 67
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHH
Q 015687 256 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL 333 (402)
Q Consensus 256 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~--~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~l 333 (402)
.++..|++++..+....++.+ .+.+.+++.+ .+.++|..|+.+|-. ..|.. ..+..+...
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~---~~P~~-------~~l~~i~~~ 600 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMR---CNPSP-------SVLQRIAQS 600 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHH---T---H-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHh---cCCCH-------HHHHHHHHH
Confidence 899999999999877666543 3667777744 356788888766644 22211 234456777
Q ss_pred hcCCCchhHHHH
Q 015687 334 LTQNYKKSIKKE 345 (402)
Q Consensus 334 l~~~~~~~v~~~ 345 (402)
+....+..|...
T Consensus 601 l~~E~~~QV~sf 612 (618)
T PF01347_consen 601 LWNEPSNQVASF 612 (618)
T ss_dssp HTT-S-HHHHHH
T ss_pred HhhCchHHHHHH
Confidence 765535555443
No 222
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.10 E-value=0.4 Score=39.77 Aligned_cols=124 Identities=15% Similarity=0.117 Sum_probs=83.8
Q ss_pred CCChhHHHHHHHHHHHhccCChHHHHHHHH----------------hCcHHHHHHhcCC------CChhhHHHHHHHHHH
Q 015687 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIE----------------AGVCPRLVELLRH------PSPSVLIPALRTVGN 309 (402)
Q Consensus 252 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~----------------~~~i~~L~~~L~~------~~~~v~~~a~~~l~n 309 (402)
+.+......++..|+|++..+... ..+++ ...+..|+..+.. ....-......++.|
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGC-EKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHH-HHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 344455667788888888755433 22222 2356677777644 223455677889999
Q ss_pred hhcCChHHHHHHHhC--CC--hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---cCCHHHHHHHhcc
Q 015687 310 IVTGDDMQTQCIINH--QA--LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLLLN 379 (402)
Q Consensus 310 l~~~~~~~~~~i~~~--~~--l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~~ 379 (402)
++.. ++.++.+++. +. +..|+.++.+. +..-|..++.+|-|+|-....+ ..++. .+++|.|+--|..
T Consensus 85 lS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLaG 158 (192)
T PF04063_consen 85 LSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLAG 158 (192)
T ss_pred hcCC-HHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhccC
Confidence 9874 5567777754 34 77888888888 7777888999999999876665 44443 4788888877754
No 223
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.10 E-value=0.47 Score=44.31 Aligned_cols=163 Identities=12% Similarity=0.141 Sum_probs=94.3
Q ss_pred HHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-CCCChhh
Q 015687 221 TWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSV 299 (402)
Q Consensus 221 ~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L-~~~~~~v 299 (402)
...++.+..............++..+..-..+++..++..|++.|.+.+.+.++........ .+..++.-| ...+.+|
T Consensus 238 ~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V 316 (533)
T KOG2032|consen 238 IAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEV 316 (533)
T ss_pred HHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHH
Confidence 33444444443222223334455555555567788999999999999998866554433332 345555544 4456789
Q ss_pred HHHHHHHHHHhhcCCh--HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc--CC--HHHHHHHHHcCCHHHH
Q 015687 300 LIPALRTVGNIVTGDD--MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GN--VNQIQAIIEAGIIGPL 373 (402)
Q Consensus 300 ~~~a~~~l~nl~~~~~--~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~--~~~~~~l~~~~~i~~L 373 (402)
...++.+|..+...-. .....++ .+--.+..+..+. ++++|..|...++.++. |. .+.....+..+.. ++
T Consensus 317 ~leam~~Lt~v~~~~~~~~l~~~~l--~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~-~l 392 (533)
T KOG2032|consen 317 QLEAMKCLTMVLEKASNDDLESYLL--NIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLA-PL 392 (533)
T ss_pred HHHHHHHHHHHHHhhhhcchhhhch--hHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccc-cc
Confidence 9999998887764211 1111111 2334566677777 99999999998888775 21 2211112233333 34
Q ss_pred HHHhccCCHHHHHHH
Q 015687 374 VNLLLNAEFEIKKEA 388 (402)
Q Consensus 374 ~~ll~~~~~~v~~~a 388 (402)
+-.+++.++.+-.++
T Consensus 393 llhl~d~~p~va~AC 407 (533)
T KOG2032|consen 393 LLHLQDPNPYVARAC 407 (533)
T ss_pred eeeeCCCChHHHHHH
Confidence 444666777655443
No 224
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.93 E-value=3.4 Score=38.92 Aligned_cols=265 Identities=12% Similarity=0.091 Sum_probs=134.3
Q ss_pred hcCcHHHHHHhh----cCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHH-hhCCCCHHHHHHHHHHHHHhhC
Q 015687 112 QSGVVPRFIEFL----SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAG 186 (402)
Q Consensus 112 ~~g~i~~L~~lL----~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~ 186 (402)
+.|.+..++..+ .+++ ..++..|+.+|++.+++-|......... .+..++. +....+.+|.-.++.+|..+..
T Consensus 252 ~~~lL~s~~~~la~ka~dp~-a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~ 329 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPS-AKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLE 329 (533)
T ss_pred ccccHHHHHHHHHHhccCch-hHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence 345555444444 3445 6889999999999999855544443332 3444444 4455678899999998887764
Q ss_pred CCc--hhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCch-hh---hhchHHHHHHhccCCChhHHHH
Q 015687 187 DSP--KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF-EQ---TRPALPALERLIHSNDDEVLTD 260 (402)
Q Consensus 187 ~~~--~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~---~~~~l~~L~~lL~~~~~~v~~~ 260 (402)
... .....++. +...+..+. .+.+++++.++...+..|+........ .+ +.+....++-.+.+.++.+. .
T Consensus 330 ~~~~~~l~~~~l~--ialrlR~l~-~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ 405 (533)
T KOG2032|consen 330 KASNDDLESYLLN--IALRLRTLF-DSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-R 405 (533)
T ss_pred hhhhcchhhhchh--HHHHHHHHH-HhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-H
Confidence 322 12222221 233334444 677888998888888877765422221 11 22222233334455666554 4
Q ss_pred HHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHH---HHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC
Q 015687 261 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL---RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN 337 (402)
Q Consensus 261 a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~---~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~ 337 (402)
||......+.-.-.. +.+ .++++... +.+.. +-.++ |++ .+....++....... ...-++++.
T Consensus 406 ACr~~~~~c~p~l~r-ke~--~~~~q~~l----d~~~~-~~q~Fyn~~c~-~L~~i~~d~l~~~~t-----~~~~~f~ss 471 (533)
T KOG2032|consen 406 ACRSELRTCYPNLVR-KEL--YHLFQESL----DTDMA-RFQAFYNQWCI-QLNHIHPDILMLLLT-----EDQHIFSSS 471 (533)
T ss_pred HHHHHHHhcCchhHH-HHH--HHHHhhhh----HHhHH-HHHHHHHHHHH-HHhhhCHHHHHHHHH-----hchhheecc
Confidence 555555544322211 111 12222221 11110 11110 111 111122222222221 233344444
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 338 YKKSIKKEACWTISNITAGNVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 338 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
-+.++..+...-.+...+..+...... -.-+...|-.+..++-++++..|..|+.-+..
T Consensus 472 -we~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 472 -WEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred -hHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 566777776666666543222222222 12245566666677889999999999887653
No 225
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.85 E-value=2.3 Score=36.67 Aligned_cols=202 Identities=19% Similarity=0.184 Sum_probs=119.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHH
Q 015687 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV 195 (402)
Q Consensus 116 i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 195 (402)
++.|+.-+....++..+...+..|..++.+..... .-++..|..+.+.+..+.+..+.+.+..+...++..-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~-----~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCV-----PPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccch-----hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 34455434444348999999999999998642211 1246667777777777777778888888876654321
Q ss_pred HhcCChHHHHHHh---------ccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhc-cCCChhHHHHHHHHH
Q 015687 196 LSNGALMPLLAQF---------NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLTDACWAL 265 (402)
Q Consensus 196 ~~~g~i~~L~~~l---------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l 265 (402)
+.+..++..+ ......+.......++..+|...|. ....+++.+..+| +++++.++..++.++
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 3444444441 1122344555566788899988765 4456778888888 788899999999999
Q ss_pred HHhccCChHHHHHHHHhCcHHHHHHhcCCC-ChhhHHHHHHHHHHhhcCCh-HHHHHHHhCCChHHHHHHhcCC
Q 015687 266 SYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLLTQN 337 (402)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~-~~~v~~~a~~~l~nl~~~~~-~~~~~i~~~~~l~~L~~ll~~~ 337 (402)
..++...- ++ +. .....+.+.|+.+ .+.+....+..++.+..+.- ..........++..+.++..+.
T Consensus 147 ~~Lc~~~v--vd-~~--s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~ 215 (234)
T PF12530_consen 147 APLCEAEV--VD-FY--SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS 215 (234)
T ss_pred HHHHHHhh--cc-HH--HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence 99994322 11 11 1223344444333 34454444444444433321 1112224446666777777665
No 226
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.85 E-value=0.17 Score=49.19 Aligned_cols=143 Identities=17% Similarity=0.203 Sum_probs=104.5
Q ss_pred chHHHHHHhccC----CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-CCChhhHHHHHHHHHHhhcCCh
Q 015687 241 PALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDD 315 (402)
Q Consensus 241 ~~l~~L~~lL~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~-~~~~~v~~~a~~~l~nl~~~~~ 315 (402)
.+-|.+.+...+ +|++++..|.-+|..+-.-+.+... .-+|.++..+. +++|.+|..|.-.+|.++.+-.
T Consensus 892 ~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN 966 (1128)
T COG5098 892 NFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN 966 (1128)
T ss_pred hhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehh
Confidence 344555555544 6889998888888776543332221 23688888886 8999999999999999987655
Q ss_pred HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 316 ~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
..++.. -..|..-|.+. +..||+.+..++.++.... .+--.|-++.+..+|.++|..+...|-..+..+
T Consensus 967 ~~~de~-----t~yLyrrL~De-~~~V~rtclmti~fLilag-----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~ 1035 (1128)
T COG5098 967 TTADEH-----THYLYRRLGDE-DADVRRTCLMTIHFLILAG-----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQI 1035 (1128)
T ss_pred hhhHHH-----HHHHHHHhcch-hhHHHHHHHHHHHHHHHcc-----ceeeccchhhhHhhccCCcchHHHHHHHHHHHH
Confidence 444433 34677778777 8999999999999887531 122257788899999999999999888888887
Q ss_pred hcCC
Q 015687 396 TSGG 399 (402)
Q Consensus 396 ~~~~ 399 (402)
+...
T Consensus 1036 a~Kd 1039 (1128)
T COG5098 1036 AKKD 1039 (1128)
T ss_pred Hhcc
Confidence 7654
No 227
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.77 E-value=5 Score=40.15 Aligned_cols=315 Identities=12% Similarity=0.090 Sum_probs=177.4
Q ss_pred HHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHhh--cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 73 LPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQ--SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 73 i~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~--~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
...+++.++.+ |..++..++..++-++..- +-.-+.+.. ......+.+++..-..-+.+...+..|+-+.....+.
T Consensus 528 Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~-nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~ 606 (978)
T KOG1993|consen 528 YCAFLNLLQDQNDLVVRLTTARTLKLVVDDW-NFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEH 606 (978)
T ss_pred HHHHHHhcCccccceeehHHHHHHHHhhhhc-cCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 46777888875 7788888999998887543 222222221 2233444455544322455667777777666543333
Q ss_pred hHHHHhCCchHHHHHhh--CCCCHHHHHHHHHHHHHhhCC----CchhhHHHHhcCChHHHHHHhcc---chhhHHHHHH
Q 015687 150 TRVVIDHGAVPIFVRLL--SSPTDDVREQAVWALGNVAGD----SPKCRDLVLSNGALMPLLAQFNE---HAKLSMLRNA 220 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~----~~~~~~~~~~~g~i~~L~~~l~~---~~~~~~~~~a 220 (402)
...... .++..|-.+= .++.+-++.+.+.+|.|+... ++.+.. ++-+++.+-.+ .++.-+.+.+
T Consensus 607 I~P~~~-~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~------fL~pVIel~~D~~sP~hv~L~EDg 679 (978)
T KOG1993|consen 607 IAPYAS-TIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYP------FLYPVIELSTDPSSPEHVYLLEDG 679 (978)
T ss_pred hhHHHH-HHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchH------HHHHHHHHhcCCCCCceeehhhhH
Confidence 221110 1122222221 225566788888888888622 221111 22333443312 2233455666
Q ss_pred HHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHH-HHhccCChHHHHHHHHhCcHHHHHHhcCCCChhh
Q 015687 221 TWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWAL-SYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299 (402)
Q Consensus 221 ~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l-~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v 299 (402)
.........+.+.-. ...-.++|.++..+..+.+.+. -++.++ +|+.-.+... -.....|++..+..++.+-..+-
T Consensus 680 meLW~~~L~n~~~l~-p~ll~L~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~~f-l~~y~~~i~k~~~~~l~dvr~eg 756 (978)
T KOG1993|consen 680 MELWLTTLMNSQKLT-PELLLLFPHLLYIIEQSTENLP-TVLMIISSYILLDNTVF-LNDYAFGIFKKLNDLLDDVRNEG 756 (978)
T ss_pred HHHHHHHHhcccccC-HHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhccHHH-HHHHHHHHHHHHHHHHHHhhHHH
Confidence 666555555543322 2335678888888865544433 334444 3333223222 22344588888999887666666
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhc-CCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHH---
Q 015687 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLV--- 374 (402)
Q Consensus 300 ~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~--- 374 (402)
....+.++-.+...++ ........+++|.+..-+- ....|.+...-..+++.+.--+++....+++ ..-...++
T Consensus 757 l~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~~l 835 (978)
T KOG1993|consen 757 LQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIAML 835 (978)
T ss_pred HHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHHHH
Confidence 6677777777776555 3444556688888887552 2226777778888888888777887777764 22222333
Q ss_pred -----HHhcc-CCHHHHHHHHHHHHHhhcCC
Q 015687 375 -----NLLLN-AEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 375 -----~ll~~-~~~~v~~~a~~aL~nl~~~~ 399 (402)
.+..+ .+++-|+--+-|+..+...|
T Consensus 836 i~~WI~~~~~I~~~k~rKl~~LalsSll~t~ 866 (978)
T KOG1993|consen 836 IGNWILLFDHINHPKDRKLNTLALSSLLRTN 866 (978)
T ss_pred HHHHHHHcccCCCHHHhhHHHHHHHHHhccC
Confidence 33332 56788888888888776654
No 228
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.77 E-value=1.9 Score=41.12 Aligned_cols=157 Identities=12% Similarity=0.142 Sum_probs=111.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCC---HHHHHHHHHHHHHhhcCCCcc
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF---PQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~---~~~~~~a~~~L~~l~~~~~~~ 149 (402)
...+.+.+.+++...+..|+..+..+ |.+ .....+++...++..|.+++.+++. .++....+.++..+..+.- .
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sl-s~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-v 161 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSL-SLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-V 161 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhc-ccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-e
Confidence 46788899999999998888888887 432 5566889999999999999988762 3556666666666655422 1
Q ss_pred hHHHHhCCchHHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHh
Q 015687 150 TRVVIDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l 227 (402)
.=..+....|.....+.+ ..+..+-..|+..|-++...++..++.+.+.--+..++..+ +..+..++..|...+..+
T Consensus 162 sW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~nal 240 (713)
T KOG2999|consen 162 SWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNAL 240 (713)
T ss_pred eeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHHH
Confidence 111112223333333332 34566778889999999888887888998888899999999 667777777777777777
Q ss_pred hhCCCC
Q 015687 228 CRGKPQ 233 (402)
Q Consensus 228 ~~~~~~ 233 (402)
....|.
T Consensus 241 ~~~a~~ 246 (713)
T KOG2999|consen 241 FRKAPD 246 (713)
T ss_pred HhhCCh
Confidence 776543
No 229
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.73 E-value=0.72 Score=37.80 Aligned_cols=113 Identities=17% Similarity=0.128 Sum_probs=78.5
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHh----c---------------CChHHHHHHhccchhhHHHHH
Q 015687 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS----N---------------GALMPLLAQFNEHAKLSMLRN 219 (402)
Q Consensus 159 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~----~---------------g~i~~L~~~l~~~~~~~~~~~ 219 (402)
.+.+.-++.++++.+|..|+.++..+..+...+-...-+ . ..-..|+..+....+..+...
T Consensus 42 ~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q 121 (182)
T PF13251_consen 42 PSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQ 121 (182)
T ss_pred cchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 344445778899999999999999987554322111110 0 123344555555667888889
Q ss_pred HHHHHHHhhhCCCCCc--hhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccC
Q 015687 220 ATWTLSNFCRGKPQPL--FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG 271 (402)
Q Consensus 220 a~~~L~~l~~~~~~~~--~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~ 271 (402)
++.++..|...-|... ......++..+..++.+.|.+++..++.+++.+...
T Consensus 122 ~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 122 LLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 9999999998865433 344466777777888899999999999998887644
No 230
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.57 E-value=0.28 Score=35.18 Aligned_cols=83 Identities=18% Similarity=0.173 Sum_probs=63.8
Q ss_pred hHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 015687 201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 280 (402)
Q Consensus 201 i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 280 (402)
+...+..+ .++.+.++..+...|..|..... ........++..+...|+++|+.|--+|+.+++.|+...++.
T Consensus 5 ~~~al~~L-~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~----- 77 (92)
T PF10363_consen 5 LQEALSDL-NDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE----- 77 (92)
T ss_pred HHHHHHHc-cCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH-----
Confidence 34455556 67788899999999999998865 344455788889999999999999999999999999766542
Q ss_pred HhCcHHHHHHhcC
Q 015687 281 EAGVCPRLVELLR 293 (402)
Q Consensus 281 ~~~~i~~L~~~L~ 293 (402)
+++.|++...
T Consensus 78 ---vl~~L~~~y~ 87 (92)
T PF10363_consen 78 ---VLPILLDEYA 87 (92)
T ss_pred ---HHHHHHHHHh
Confidence 3455555543
No 231
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.55 E-value=2.8 Score=36.20 Aligned_cols=203 Identities=17% Similarity=0.191 Sum_probs=116.0
Q ss_pred hHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchh
Q 015687 159 VPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 237 (402)
Q Consensus 159 i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 237 (402)
++.|+. +-+..++++....+.+|..++.....+... ++..+..+. ..++......+...+..+-...+ ..+
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~-~~~~~~~~~~~~rLl~~lw~~~~-r~f- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLV-EQGSLELRYVALRLLTLLWKAND-RHF- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHH-cCCchhHHHHHHHHHHHHHHhCc-hHH-
Confidence 344555 455688999999999999999876212222 233444444 44444444445555555554422 222
Q ss_pred hhhchHHHHHHh-----c---c--CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-CCCChhhHHHHHHH
Q 015687 238 QTRPALPALERL-----I---H--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRT 306 (402)
Q Consensus 238 ~~~~~l~~L~~l-----L---~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L-~~~~~~v~~~a~~~ 306 (402)
+.+..++.. . . +...+.......++..+|...++. ...+++.+..+| .+.++.++..++.+
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-----g~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-----GVDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 222222222 1 1 122344555566777787666552 224577888888 78888899999999
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHcCCHHHHHHHhccCCHH
Q 015687 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG--NVNQIQAIIEAGIIGPLVNLLLNAEFE 383 (402)
Q Consensus 307 l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~ 383 (402)
+..+|...--... .....+.+-+..+..|.+.+..|..+..+..+ +.+. .......++..+.+...+.+.+
T Consensus 146 l~~Lc~~~vvd~~-----s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~-~~~~~~~~l~~lW~~~~~~~~~ 218 (234)
T PF12530_consen 146 LAPLCEAEVVDFY-----SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEE-YEELKRQILQLLWEYTSSSDVN 218 (234)
T ss_pred HHHHHHHhhccHH-----HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhh-hhHHHHHHHHHHHhhccccccc
Confidence 9999943221111 22334555555555677777666656555543 2222 2334455788888888776643
No 232
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.53 E-value=0.19 Score=36.11 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=58.3
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH
Q 015687 285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359 (402)
Q Consensus 285 i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~ 359 (402)
+...+..+.++.+.+|..++..|+.++.... ....-..+++..+...|+++ ++-|--.|+.+|+.++...++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChH
Confidence 4567778889999999999999999998766 11122237788888999999 999999999999999986555
No 233
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.49 E-value=1.8 Score=42.47 Aligned_cols=186 Identities=15% Similarity=0.098 Sum_probs=114.4
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhcCC-C----cchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 015687 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGT-S----ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191 (402)
Q Consensus 117 ~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~-~----~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 191 (402)
|.|..-|+-.+ ..+|..|+..+.+.---. + +..+.+++. -...+-.+|+++-+.+|..|..-+..+...-.+.
T Consensus 177 p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~ 254 (1005)
T KOG1949|consen 177 PILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM 254 (1005)
T ss_pred HHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 34444555666 799999999998875321 2 223445543 3678889999999999998888777765331111
Q ss_pred --hHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhc
Q 015687 192 --RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (402)
Q Consensus 192 --~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~ 269 (402)
...+.+ .+..+..-+..++..+++......|..+..++ ........++|.+-..|+++...|+.++...|..+-
T Consensus 255 iP~~i~~~--ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 255 IPPTILID--LLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred cCHHHHHH--HHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 011111 23333344444556678888888888887662 233445677888888889999999999988887775
Q ss_pred cCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 015687 270 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (402)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~ 311 (402)
....-. +.+---.+.++.-|..++..+...-+..|-+.+
T Consensus 331 ~vra~~---f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 331 AVRAAK---FWKICPMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred hhhhhh---hhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 432211 211112344555565555555555555555544
No 234
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=94.43 E-value=3.2 Score=36.44 Aligned_cols=221 Identities=15% Similarity=0.114 Sum_probs=131.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc-chhhHHHHHHHHHHHHhhhCCCCCchhh
Q 015687 160 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKPQPLFEQ 238 (402)
Q Consensus 160 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 238 (402)
..|-..|.++++.+|..|+..|+.+...-+.. .+...-+..|+..+.. -.|......++.++..|.... ......
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~-~~~~~~ 77 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK-NFSPES 77 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc-CCChhh
Confidence 34566788999999999999999988665521 1222235555555422 235555656677777777543 222222
Q ss_pred hhchHHHHHHhcc--CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHHHhhcCCh
Q 015687 239 TRPALPALERLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDD 315 (402)
Q Consensus 239 ~~~~l~~L~~lL~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~nl~~~~~ 315 (402)
...++..+.+-.+ .-....|..+...+..+.....+..+. ...+.+..++..+.. .||.-...+...+..+...-+
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 3344444443322 224567888888888887654433321 223566777777754 467666677777776665433
Q ss_pred HHHHHHHhCCChHHHHHHhc--------CC-Cch--hHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHH
Q 015687 316 MQTQCIINHQALPCLLDLLT--------QN-YKK--SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 384 (402)
Q Consensus 316 ~~~~~i~~~~~l~~L~~ll~--------~~-~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 384 (402)
. ....+.+...+. .+ .+| -.+..-...|.+....++... .-.+|.|++-|.++.+.+
T Consensus 157 ~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~ 224 (262)
T PF14500_consen 157 I-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSV 224 (262)
T ss_pred c-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHH
Confidence 1 222333333332 11 122 234455555655555444432 237899999999999999
Q ss_pred HHHHHHHHHHhhc
Q 015687 385 KKEAAWAISNATS 397 (402)
Q Consensus 385 ~~~a~~aL~nl~~ 397 (402)
+..++.+|..++.
T Consensus 225 K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 225 KLDSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 235
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.40 E-value=0.82 Score=46.10 Aligned_cols=196 Identities=18% Similarity=0.202 Sum_probs=120.4
Q ss_pred HHHHhhcCCCcchHHHHhCCchHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChH--HHHHHhccchhh
Q 015687 138 ALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM--PLLAQFNEHAKL 214 (402)
Q Consensus 138 ~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~--~L~~~l~~~~~~ 214 (402)
+|.++...+++....+++.|++..+...++. ...+++..++..++|++...+ .+........+. .+-..+....+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~-~~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLE-LRELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHhhcchh
Confidence 6668888889999999999999999999985 678899999999999986554 222222222222 333344445555
Q ss_pred HHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-
Q 015687 215 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR- 293 (402)
Q Consensus 215 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~- 293 (402)
+.-..++..|+.+..+.+...... . -+.+......++.+...... ......-..+.+..++.
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~~---~-----------r~~~~~~l~e~i~~~~~~~~---~~~~~~~f~~~~~~il~~ 635 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTECV---F-----------RNSVNELLVEAISRWLTSEI---RVINDRSFFPRILRILRL 635 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCcccc---c-----------hHHHHHHHHHHhhccCccce---eehhhhhcchhHHHHhcc
Confidence 777888888888877643211000 0 01112222222222221111 11111111121444443
Q ss_pred CCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 015687 294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (402)
Q Consensus 294 ~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 351 (402)
+..+..+..|++++.+++...+++...+.+.++++.+.++-.......++.++...+-
T Consensus 636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 693 (699)
T KOG3665|consen 636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE 693 (699)
T ss_pred cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence 3456678999999999999988888888999999988887765534455555554443
No 236
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.28 E-value=4.8 Score=37.85 Aligned_cols=191 Identities=13% Similarity=0.133 Sum_probs=118.7
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhcCCC---cchHHHHhCCchHHHHHhhCC-------CCHHHHHHHHHHHHHhhC
Q 015687 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTS---ENTRVVIDHGAVPIFVRLLSS-------PTDDVREQAVWALGNVAG 186 (402)
Q Consensus 117 ~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~g~i~~L~~lL~~-------~~~~v~~~a~~~L~nl~~ 186 (402)
..+..++...+ ++-++.|+...+..+.+.+ .++..+.++-+++.+-+++.+ ++...+..++..|.-+|.
T Consensus 14 ~~~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~ 92 (698)
T KOG2611|consen 14 DDCLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR 92 (698)
T ss_pred hhHHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence 33566666666 6789999999999988643 245667887778989998865 345667788888888887
Q ss_pred CCchh-hHHHHhcCChHHHHHHhccchhhH------HHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCC----h
Q 015687 187 DSPKC-RDLVLSNGALMPLLAQFNEHAKLS------MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND----D 255 (402)
Q Consensus 187 ~~~~~-~~~~~~~g~i~~L~~~l~~~~~~~------~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~----~ 255 (402)
+.+-. ...+++ .||.|+..+.+..|++ +...+..+|..++...+........|.++.+.++-.-.+ .
T Consensus 93 ~pElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ 170 (698)
T KOG2611|consen 93 VPELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDM 170 (698)
T ss_pred ChhhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhH
Confidence 65421 233333 6889999986655544 788899999999988666666666899999987654332 2
Q ss_pred hHHHHHHHHH-HHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 015687 256 EVLTDACWAL-SYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 313 (402)
Q Consensus 256 ~v~~~a~~~l-~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~ 313 (402)
.+.--++..+ +.+-..++. +..+.. ++..+..-+...+....-..|+.+..+...
T Consensus 171 alal~Vlll~~~~~~cw~e~-~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~~ 226 (698)
T KOG2611|consen 171 ALALKVLLLLVSKLDCWSET-IERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLSS 226 (698)
T ss_pred HHHHHHHHHHHHhcccCcCC-HHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHhC
Confidence 2222221111 111122221 122221 133343334444455666777888765543
No 237
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.25 E-value=0.49 Score=38.34 Aligned_cols=111 Identities=21% Similarity=0.218 Sum_probs=79.7
Q ss_pred CcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhC--CChHHHHHHhcCCCchhHHHHHHHHHHHHhc---CC
Q 015687 283 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH--QALPCLLDLLTQNYKKSIKKEACWTISNITA---GN 357 (402)
Q Consensus 283 ~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~--~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~---~~ 357 (402)
..+.++..+|.+.++.-+-.++..++.++..++. +.+.+. ..+..++.+|+.+..+.+++.++.++..|.. +.
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3567888999998888899999999988876532 223232 5688899999887677889999999998885 55
Q ss_pred HHHHHHHHHc---CCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 358 VNQIQAIIEA---GIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 358 ~~~~~~l~~~---~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
++-.+.+... ++++.++.+++. ......++.+|..+..
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 6655555432 345666666654 5677788888877754
No 238
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.20 E-value=0.66 Score=44.41 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=80.3
Q ss_pred hhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 015687 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 315 (402)
Q Consensus 236 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~ 315 (402)
...+.+.+..++..+.+.|..|+..+|.+|+.+.+.-.+ ++..+-.|++..|.+-+.+..+.||..|+.+|+.+-..+.
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 456678888888888999999999999999998865443 3556667888999998989999999999999988864322
Q ss_pred HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHH
Q 015687 316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT 349 (402)
Q Consensus 316 ~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~ 349 (402)
.-.. .+...|..+++..++.+||..|..-
T Consensus 165 neen-----~~~n~l~~~vqnDPS~EVRr~alln 193 (885)
T COG5218 165 NEEN-----RIVNLLKDIVQNDPSDEVRRLALLN 193 (885)
T ss_pred ChHH-----HHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 1111 2233566777766577888876443
No 239
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=94.18 E-value=2 Score=42.65 Aligned_cols=135 Identities=20% Similarity=0.196 Sum_probs=80.6
Q ss_pred chHHHHHHhccCC----ChhHHHHHHHHHHHhcc----CChHHHHHHHHhCcHHHHHHhc----CCCChhhHHHHHHHHH
Q 015687 241 PALPALERLIHSN----DDEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLVELL----RHPSPSVLIPALRTVG 308 (402)
Q Consensus 241 ~~l~~L~~lL~~~----~~~v~~~a~~~l~~l~~----~~~~~~~~~~~~~~i~~L~~~L----~~~~~~v~~~a~~~l~ 308 (402)
..+..+..++.++ .+.+...++-+++.+.. ..+.. ...+-..+++.+...| ...+...+..++++||
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSC-PDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 4455666666543 45677777777766642 22110 0111122445555544 3445566788999999
Q ss_pred HhhcCChHHHHHHHhCCChHHHHHHhc--CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc--CCHHH
Q 015687 309 NIVTGDDMQTQCIINHQALPCLLDLLT--QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEI 384 (402)
Q Consensus 309 nl~~~~~~~~~~i~~~~~l~~L~~ll~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v 384 (402)
|+.... .++.+..++. ...+..+|..|+|+|..++...+..++ +.|+.++.+ .++++
T Consensus 472 N~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~Ev 532 (574)
T smart00638 472 NAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPEV 532 (574)
T ss_pred ccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChHH
Confidence 987532 2344555554 112568999999999999875555433 345555544 56789
Q ss_pred HHHHHHHHHHh
Q 015687 385 KKEAAWAISNA 395 (402)
Q Consensus 385 ~~~a~~aL~nl 395 (402)
|..|..+|...
T Consensus 533 RiaA~~~lm~t 543 (574)
T smart00638 533 RMAAVLVLMET 543 (574)
T ss_pred HHHHHHHHHhc
Confidence 99888877643
No 240
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.15 E-value=0.56 Score=38.82 Aligned_cols=83 Identities=12% Similarity=0.140 Sum_probs=62.6
Q ss_pred cCChHHHHHHHHhCcHHHHHHhcC---------CCChhhHHHHHHHHHHhhcCChHHHHHHHh-CCChHHHHHHhcCCCc
Q 015687 270 DGTNDKIQAVIEAGVCPRLVELLR---------HPSPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQNYK 339 (402)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~L~~~L~---------~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~-~~~l~~L~~ll~~~~~ 339 (402)
..+...++.+++.|++..|+.+|. ..+......+++|+..++.... ....+++ .+++..|...|.++ +
T Consensus 94 t~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~-G~~~v~~~~~~v~~i~~~L~s~-~ 171 (187)
T PF06371_consen 94 TNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKY-GLEAVLSHPDSVNLIALSLDSP-N 171 (187)
T ss_dssp HS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHH-HHHHHHCSSSHHHHHHHT--TT-S
T ss_pred cCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHH-HHHHHHcCcHHHHHHHHHHCCC-C
Confidence 455567888999999999999873 1345677889999988886544 4555665 58899999999988 9
Q ss_pred hhHHHHHHHHHHHHh
Q 015687 340 KSIKKEACWTISNIT 354 (402)
Q Consensus 340 ~~v~~~a~~~L~nl~ 354 (402)
..+|..++-+|+.+|
T Consensus 172 ~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 172 IKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999886
No 241
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=93.88 E-value=4.2 Score=35.67 Aligned_cols=216 Identities=18% Similarity=0.129 Sum_probs=117.8
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhccCC--CC-chhHHh-----------hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 015687 77 VAGVWSDDRNIQLDATTQFRKLLSIER--SP-PINEVI-----------QSGVVPRFIEFLSRDDFPQLQFEAAWALTNI 142 (402)
Q Consensus 77 ~~~l~s~~~~~~~~a~~~l~~l~s~~~--~~-~~~~~~-----------~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l 142 (402)
+.+|.+..+..-..|+..+.++++.-+ .+ ..+.+. -.|+.+.+++=+.++. ....++..|..+
T Consensus 13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~---t~e~tl~lL~~L 89 (262)
T PF14225_consen 13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS---TYELTLRLLSRL 89 (262)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC---cHHHHHHHHHHH
Confidence 446666666666667777776655421 11 111111 1233333444444443 344555666665
Q ss_pred hcCC-------CcchHHHHhCCchHHHHHhhCCCC----HHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccc
Q 015687 143 ASGT-------SENTRVVIDHGAVPIFVRLLSSPT----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH 211 (402)
Q Consensus 143 ~~~~-------~~~~~~~~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~ 211 (402)
+... ++.+-.+.=.+.+|.++.-+++++ ......++..|+.+|.... ...+..++....++
T Consensus 90 ~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~ 161 (262)
T PF14225_consen 90 TPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKG 161 (262)
T ss_pred hcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhc
Confidence 5431 222222222356778888777766 2344466788888874322 12344445444333
Q ss_pred hhhHHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH
Q 015687 212 AKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 290 (402)
Q Consensus 212 ~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ 290 (402)
.-.+.......+...++... |. .....+-.+..+|.+.-+.++..++.+|..+....+-... ...+++..+.+
T Consensus 162 ~fr~~~dfl~~v~~~l~~~f~P~----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispllr 235 (262)
T PF14225_consen 162 RFRDKDDFLSQVVSYLREAFFPD----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPLLR 235 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHHHH
Confidence 22222233333334444432 32 2245667788899888899999999999998765443322 44567888999
Q ss_pred hcCCCChhhHHHHHHHHHHhhc
Q 015687 291 LLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 291 ~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
++..+-. ..|+.++-++..
T Consensus 236 lL~t~~~---~eAL~VLd~~v~ 254 (262)
T PF14225_consen 236 LLQTDLW---MEALEVLDEIVT 254 (262)
T ss_pred HhCCccH---HHHHHHHHHHHh
Confidence 9876653 456666655543
No 242
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=93.62 E-value=2.9 Score=34.36 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=78.9
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhC
Q 015687 245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH 324 (402)
Q Consensus 245 ~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~ 324 (402)
.+..++.++++.++..|+.++..|.++........-+.+ ...... .+--..+|.+..
T Consensus 44 Llt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~----------~~~~sF-tslS~tLa~~i~------------ 100 (182)
T PF13251_consen 44 LLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESK----------GPSGSF-TSLSSTLASMIM------------ 100 (182)
T ss_pred hhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcC----------CCCCCc-ccHHHHHHHHHH------------
Confidence 344455677888888888888888877654332222111 111111 111222333222
Q ss_pred CChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC----HHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 325 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI----IGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 325 ~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~----i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
.+-..|+..|+.+.+..+....+.++..+...+|.+.-. .|+ +..+..++.+.|.+++..+..+++.+.+..
T Consensus 101 ~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~---~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 101 ELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLP---PGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcC---HhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 122346666766657788889999999999876665432 234 455555667789999999999998887643
No 243
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.56 E-value=0.45 Score=41.77 Aligned_cols=145 Identities=15% Similarity=0.190 Sum_probs=91.6
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhh
Q 015687 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 238 (402)
Q Consensus 159 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 238 (402)
+...+..|.+.+.+...-++..+..|+...++.....+.. .+..+++-+ ++....+-+.||.++..+...........
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvksl-KNlRS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSL-KNLRSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666666777777765554332222221 455556666 66777888999999998887743332222
Q ss_pred hhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 015687 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 239 ~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
...++-.|..--..++.-|++++-.+|..+..+.... .+++.|+..+.+.++.++..++.++.+...
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCVI 234 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccce
Confidence 2333333222223345678999999999888665432 246788888999999998888877766654
No 244
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=93.47 E-value=1.1 Score=36.04 Aligned_cols=146 Identities=11% Similarity=0.105 Sum_probs=86.7
Q ss_pred hchHHHHHHhccCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-CCCChhhHHHHHHHHHHhhcCChHH
Q 015687 240 RPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQ 317 (402)
Q Consensus 240 ~~~l~~L~~lL~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L-~~~~~~v~~~a~~~l~nl~~~~~~~ 317 (402)
..+++.|..+|+++ +..++..++++++.|..-++...+.+... . + ..- ...........+...+ .....++.
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~-~-~---~~~~~~~~~~~~~~~l~~~~-~~~~~ee~ 82 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS-L-D---SKSSENSNDESTDISLPMMG-ISPSSEEY 82 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc-C-C---ccccccccccchhhHHhhcc-CCCchHHH
Confidence 57788888999765 68999999999999987777554422111 0 1 000 1111222222222222 21122222
Q ss_pred HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 015687 318 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 318 ~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 396 (402)
.. ..++..|+.+|+++.-..-...++.++.++... ...+ -..+.. ++|.+++.+...+...++.-.+-|+.+.
T Consensus 83 y~----~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~-viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 83 YP----TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQ-VIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HH----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHH-HhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 22 234567888887763344455677777777742 1222 333333 8999999999877788888888888775
Q ss_pred c
Q 015687 397 S 397 (402)
Q Consensus 397 ~ 397 (402)
.
T Consensus 157 ~ 157 (160)
T PF11865_consen 157 S 157 (160)
T ss_pred H
Confidence 3
No 245
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.46 E-value=1.1 Score=44.12 Aligned_cols=134 Identities=18% Similarity=0.121 Sum_probs=97.0
Q ss_pred CCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCc
Q 015687 156 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235 (402)
Q Consensus 156 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 235 (402)
..++|.|..-+++.+..+++.++..+..++..-+ -..+..-++|.+-.+.....+..++.+++-++..+... .+
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~---lD 461 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR---LD 461 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH---HH
Confidence 3577888888888999999999999999986543 13344557788888776788999999999999998833 22
Q ss_pred hhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC
Q 015687 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296 (402)
Q Consensus 236 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~ 296 (402)
...+...++.+....+..|+.+....+.+...+....... ..+....++|.++.+...+.
T Consensus 462 ~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 462 KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence 2223344455566667789999998888888776443332 34556678899888876554
No 246
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.44 E-value=0.56 Score=47.11 Aligned_cols=152 Identities=19% Similarity=0.207 Sum_probs=84.2
Q ss_pred HHHHHHHhhhCCCCCchhhhhchHHHHHHhccC----CChhHHHHHHHHHHHhcc---CCh------HHHHHHHHhCcHH
Q 015687 220 ATWTLSNFCRGKPQPLFEQTRPALPALERLIHS----NDDEVLTDACWALSYLSD---GTN------DKIQAVIEAGVCP 286 (402)
Q Consensus 220 a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~----~~~~v~~~a~~~l~~l~~---~~~------~~~~~~~~~~~i~ 286 (402)
+...|..+......+.. ..+..+..++.+ .++.+...++-+++.+.. ... ......+...+++
T Consensus 414 a~~~l~~l~~~~~~Pt~----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~ 489 (618)
T PF01347_consen 414 AAQLLASLPFHVRRPTE----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVP 489 (618)
T ss_dssp HHHHHHHHHHT-----H----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTH
T ss_pred HHHHHHHHHhhcCCCCH----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHH
Confidence 44445555544323333 334444455543 356677777777776642 110 0001112223455
Q ss_pred HHHHhcC----CCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC--CchhHHHHHHHHHHHHhcCCHHH
Q 015687 287 RLVELLR----HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN--YKKSIKKEACWTISNITAGNVNQ 360 (402)
Q Consensus 287 ~L~~~L~----~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~--~~~~v~~~a~~~L~nl~~~~~~~ 360 (402)
.+...+. ..+...+..++++|||+.. + ..++.+..++... ....+|..|+|+|..++...++.
T Consensus 490 ~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~ 558 (618)
T PF01347_consen 490 YLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK 558 (618)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH
Confidence 5555553 4566778899999999964 2 3456666666544 25689999999999998777765
Q ss_pred HHHHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHH
Q 015687 361 IQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISN 394 (402)
Q Consensus 361 ~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~n 394 (402)
+. +.|+.++.+ .++++|..|..+|..
T Consensus 559 v~--------~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 559 VR--------EILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HH--------HHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred HH--------HHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 43 455666654 567899888877764
No 247
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=93.43 E-value=3.7 Score=38.05 Aligned_cols=228 Identities=16% Similarity=0.146 Sum_probs=119.5
Q ss_pred hHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh-CCCCCch
Q 015687 159 VPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR-GKPQPLF 236 (402)
Q Consensus 159 i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~-~~~~~~~ 236 (402)
+.+++.=+. +....+|..++--|+.-+.+. .++..+..+|....+++.+...++..+...++.++..+.. +.+....
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~-~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADP-QFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCH-HHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 455555444 345678888888888887754 4899999999999999999555554355555445544444 4344444
Q ss_pred hhhhchHHHHHHhccCC---C--hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc---------CCCChhhHHH
Q 015687 237 EQTRPALPALERLIHSN---D--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL---------RHPSPSVLIP 302 (402)
Q Consensus 237 ~~~~~~l~~L~~lL~~~---~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L---------~~~~~~v~~~ 302 (402)
.........+..++.-+ + ......-...+.... + +.+..+.+.+ .+....-+..
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~-------~-----~~~~~~~~~~~~~~~~~~~~~~~lsp~~l 169 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQ-------Q-----KSRSLCKELLSSGSSWKSPKPPELSPQTL 169 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchhhhhhhhhhHHH-------H-----HHHHHHHHHHhccccccccCCcccccccH
Confidence 33355566666666511 1 000000000011100 0 1111122222 1223345566
Q ss_pred HHHHHHHhhcC--------------ChHHHHHHHhCCChHHHHHHhcC----CC------c-----hhHHHHHHHHHHHH
Q 015687 303 ALRTVGNIVTG--------------DDMQTQCIINHQALPCLLDLLTQ----NY------K-----KSIKKEACWTISNI 353 (402)
Q Consensus 303 a~~~l~nl~~~--------------~~~~~~~i~~~~~l~~L~~ll~~----~~------~-----~~v~~~a~~~L~nl 353 (402)
|+.++-.++.. .+...+.+.+.|+++.++.++.. .. . ...-..+.++|=|.
T Consensus 170 all~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~ 249 (361)
T PF07814_consen 170 ALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESV 249 (361)
T ss_pred HHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHH
Confidence 77776666411 01123445566889999988852 10 1 11234566777777
Q ss_pred hcCCHHHHHHHHH--cCCHHHHHHH----hccCCHHHHHHHHHHHHHhhcCC
Q 015687 354 TAGNVNQIQAIIE--AGIIGPLVNL----LLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 354 ~~~~~~~~~~l~~--~~~i~~L~~l----l~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
+..+.++...++. .+.++.+... .......+...++..+.|++.+.
T Consensus 250 T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n 301 (361)
T PF07814_consen 250 TFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN 301 (361)
T ss_pred HhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC
Confidence 7655554445543 2233332222 22233445677888888887654
No 248
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.30 E-value=4 Score=39.02 Aligned_cols=155 Identities=14% Similarity=0.137 Sum_probs=110.6
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccch---hhHHHHHHHHHHHHhhhCCCCCc
Q 015687 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPL 235 (402)
Q Consensus 159 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~---~~~~~~~a~~~L~~l~~~~~~~~ 235 (402)
...+...+.+++..-+..+...|..++.+.. +...++...++..|..++.+.. ..++....+.+++.+-.+.- ..
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~-fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs 162 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPT-FAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS 162 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHH-HHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence 4456667777777777778888888887765 5677788888999999985443 45677788888888776642 11
Q ss_pred hhhh-hchHHHHHHh--ccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 015687 236 FEQT-RPALPALERL--IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 236 ~~~~-~~~l~~L~~l--L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
.... ..++-....+ .+..+..+...|+..+-++.-+++...+.+.+.--++.|+..+...+..++..|+..+..+..
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 1111 1222222222 233467788899999999888888777778888889999999999998899888888887776
Q ss_pred CCh
Q 015687 313 GDD 315 (402)
Q Consensus 313 ~~~ 315 (402)
..+
T Consensus 243 ~a~ 245 (713)
T KOG2999|consen 243 KAP 245 (713)
T ss_pred hCC
Confidence 544
No 249
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=93.18 E-value=13 Score=41.87 Aligned_cols=276 Identities=13% Similarity=0.063 Sum_probs=144.9
Q ss_pred CCCHHHHHHHHHHHHHHhccC--CCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCC--
Q 015687 82 SDDRNIQLDATTQFRKLLSIE--RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG-- 157 (402)
Q Consensus 82 s~~~~~~~~a~~~l~~l~s~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g-- 157 (402)
+.+..+...|+..|+++...- ..+....-.+..++..|..++.+..+.+++...+.|+.++..... .-+..|
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~----~nIkSGWk 1223 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV----NNVKSGWK 1223 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH----hhhhcCcH
Confidence 345678888888888864421 111111122345678888877766558999999999998876422 222334
Q ss_pred -chHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch-h----hHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHh----
Q 015687 158 -AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK-C----RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF---- 227 (402)
Q Consensus 158 -~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~----~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l---- 227 (402)
++..|.....+.++.+.+.|..++..++.+.-. . .+.+.+ .+..+.....+..+..+--.++..|+++
T Consensus 1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~D--lV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076 1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTD--CVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHH--HHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence 233333333457788999999988887654211 0 011111 3444444443333333333444444433
Q ss_pred hhCC----------C-------------CC------ch---hhhhchHHHHHHhccCCChhHHHHHHHHHHHhccC----
Q 015687 228 CRGK----------P-------------QP------LF---EQTRPALPALERLIHSNDDEVLTDACWALSYLSDG---- 271 (402)
Q Consensus 228 ~~~~----------~-------------~~------~~---~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~---- 271 (402)
.... . .. .. ..--.++..|..+..++.++|+..|+.+|..+...
T Consensus 1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence 1110 0 00 00 01122333444555677899999999988776532
Q ss_pred -ChHHHHHHHHhCcHHHHHHhcCCC------------------C-h----hhHHHHHHHHHHhhcCChHHH---HHHHhC
Q 015687 272 -TNDKIQAVIEAGVCPRLVELLRHP------------------S-P----SVLIPALRTVGNIVTGDDMQT---QCIINH 324 (402)
Q Consensus 272 -~~~~~~~~~~~~~i~~L~~~L~~~------------------~-~----~v~~~a~~~l~nl~~~~~~~~---~~i~~~ 324 (402)
+.+....++. +++-+++..+++. + . -..+.+..++.+++.--..+. ..+++
T Consensus 1382 Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~- 1459 (1780)
T PLN03076 1382 FSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK- 1459 (1780)
T ss_pred CCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 2233333333 4555555554311 0 0 123444444444443222222 22222
Q ss_pred CChHHHHHHhcCCCchhHHHHHHHHHHHHhc-----CCHHHHHHHHH
Q 015687 325 QALPCLLDLLTQNYKKSIKKEACWTISNITA-----GNVNQIQAIIE 366 (402)
Q Consensus 325 ~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-----~~~~~~~~l~~ 366 (402)
+++..|...+..+ +..+-+.++.+|.++.. -++++...+++
T Consensus 1460 ~~l~ll~~ci~q~-n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~ 1505 (1780)
T PLN03076 1460 KVLMLLVSFIKRP-HQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVL 1505 (1780)
T ss_pred HHHHHHHHHHcCc-hHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 4555555666666 78888888888888875 25666655544
No 250
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.17 E-value=13 Score=41.25 Aligned_cols=230 Identities=13% Similarity=0.112 Sum_probs=129.7
Q ss_pred CchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC-CCCc
Q 015687 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPL 235 (402)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~ 235 (402)
-.+..++..+..+++..+..+..+++.++...+.. . .-.+..+.++..+....|+-.+....-++..+-++. ....
T Consensus 876 ~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~-f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s 952 (2067)
T KOG1822|consen 876 SALTLIVNSLINPNPKLRCAAAEALARLAQVVGSA--P-FVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGS 952 (2067)
T ss_pred HHHHHHhhhhccCChHHHHHHHHHHHHHHHhcccc--c-hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCC
Confidence 34566666777789999999999999998654421 1 112356667777766667766767777777777765 3344
Q ss_pred hhhhhchHHHHHHhccCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCh---hhHH----------
Q 015687 236 FEQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP---SVLI---------- 301 (402)
Q Consensus 236 ~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~---~v~~---------- 301 (402)
.......+..+..+..++ +|.|+..++.++..+.+.........++. -+..+..+|-+..+ ++..
T Consensus 953 ~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~-tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~ 1031 (2067)
T KOG1822|consen 953 GQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEP-TLSLCLKLLLSVPTSHVEVHQCYNRCFNGDD 1031 (2067)
T ss_pred chhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHH-HHHHHHHHcCCCCcchhhhhhhhccccccch
Confidence 444556677777777665 56999999999999986554443333332 23334444432211 1111
Q ss_pred ---HHHHHHHHhhcCChH--HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH
Q 015687 302 ---PALRTVGNIVTGDDM--QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNL 376 (402)
Q Consensus 302 ---~a~~~l~nl~~~~~~--~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l 376 (402)
....++|+=..++.. .+.. +..-.+-...-++.++ ++-++.++..++-++-...|.+... .-+++.|..+
T Consensus 1032 ~~~alittlgpeL~~N~~~d~t~~-~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~ 1106 (2067)
T KOG1822|consen 1032 DEDALITTLGPELGPNGDKDSTST-LRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSL 1106 (2067)
T ss_pred hHHHHHHhcccccCCCCcccchhH-HHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHH
Confidence 222233333322221 1111 1111222333344555 8889999999999887644432211 1146666666
Q ss_pred hccCCHHHHHHHHHHHHHh
Q 015687 377 LLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 377 l~~~~~~v~~~a~~aL~nl 395 (402)
+.+...-.|.....++..+
T Consensus 1107 l~s~~~i~r~~~~~clrql 1125 (2067)
T KOG1822|consen 1107 LSSSYLILRRASFSCLRQL 1125 (2067)
T ss_pred hcchhhhhhhhHHhhhhHH
Confidence 6655444444444444433
No 251
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.92 E-value=1.8 Score=41.65 Aligned_cols=100 Identities=16% Similarity=0.149 Sum_probs=72.1
Q ss_pred CcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc--CCHHH
Q 015687 283 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQ 360 (402)
Q Consensus 283 ~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~ 360 (402)
|.+..++..+.+.+..||..++.+|+.+...-.+ ++..+-.|++..|..-+-+. .+.||.+|+.+|+.+-. +++++
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DR-E~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDR-EKAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhccCChHH
Confidence 5677777788889999999999999988764432 33344447777888777777 88999999999999875 45553
Q ss_pred HHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHH
Q 015687 361 IQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWA 391 (402)
Q Consensus 361 ~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~a 391 (402)
. +...|..+++. ++.+||..|+--
T Consensus 169 ~-------~~n~l~~~vqnDPS~EVRr~alln 193 (885)
T COG5218 169 R-------IVNLLKDIVQNDPSDEVRRLALLN 193 (885)
T ss_pred H-------HHHHHHHHHhcCcHHHHHHHHHHH
Confidence 2 33456666654 556888876543
No 252
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=92.88 E-value=0.98 Score=41.83 Aligned_cols=148 Identities=14% Similarity=0.130 Sum_probs=85.1
Q ss_pred HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhcc------CCChhHHHHHHHHHHH
Q 015687 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH------SNDDEVLTDACWALSY 267 (402)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~------~~~~~v~~~a~~~l~~ 267 (402)
.+.+..-.+.+=.-+..+....-++.|+..+..|++..+......+.+ .+..++. +.+..-...|+..++.
T Consensus 205 ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~---~i~~~l~~y~~~~~~~w~~KD~Al~Li~a 281 (370)
T PF08506_consen 205 ELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQ---YIQQLLQQYASNPSNNWRSKDGALYLIGA 281 (370)
T ss_dssp HHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-TTT-HHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHhhCCcccHHHHHHHHHHHHH
Confidence 344444555555555333345567888899999997633222222222 2333332 2456667778888888
Q ss_pred hccCChH------------HHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhc
Q 015687 268 LSDGTND------------KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT 335 (402)
Q Consensus 268 l~~~~~~------------~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~ 335 (402)
++..... .+..+....++|.|. -=.+..+-++..|++.+..+-..-+. +.+ .+++|.++..|.
T Consensus 282 la~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--~~l--~~~~~~l~~~L~ 356 (370)
T PF08506_consen 282 LASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--EQL--LQIFPLLVNHLQ 356 (370)
T ss_dssp HHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--HHH--HHHHHHHHHHTT
T ss_pred HHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--HHH--HHHHHHHHHHhC
Confidence 8754321 223455555666555 11234566888899998887664332 112 258999999999
Q ss_pred CCCchhHHHHHHHHH
Q 015687 336 QNYKKSIKKEACWTI 350 (402)
Q Consensus 336 ~~~~~~v~~~a~~~L 350 (402)
++ +..|+.+|+.++
T Consensus 357 ~~-~~vv~tyAA~~i 370 (370)
T PF08506_consen 357 SS-SYVVHTYAAIAI 370 (370)
T ss_dssp SS--HHHHHHHHHHH
T ss_pred CC-CcchhhhhhhhC
Confidence 99 888999998875
No 253
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=92.85 E-value=4.8 Score=33.34 Aligned_cols=145 Identities=18% Similarity=0.176 Sum_probs=93.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
++.+++...+++...+..|+..+..++...=-.|.. .+|.++.+..+++ +.++..|...+..+....+.....
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHHH
Confidence 578888888999999999999999988765344444 4899999999988 999999999999998764444433
Q ss_pred HHhCCchHHHHHhh---C-CCCHHH---HHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccch-------hhHHHH
Q 015687 153 VIDHGAVPIFVRLL---S-SPTDDV---REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-------KLSMLR 218 (402)
Q Consensus 153 ~~~~g~i~~L~~lL---~-~~~~~v---~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~-------~~~~~~ 218 (402)
-...| +..-..+- . +..... ....+..+..+...+...|..+ +..+++.+.... ...-..
T Consensus 83 ~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~ 156 (187)
T PF12830_consen 83 RYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLD 156 (187)
T ss_pred HHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHH
Confidence 33333 32222221 1 111111 4455666667776555555554 455666663321 334455
Q ss_pred HHHHHHHHhhhC
Q 015687 219 NATWTLSNFCRG 230 (402)
Q Consensus 219 ~a~~~L~~l~~~ 230 (402)
...++..||+.-
T Consensus 157 ~~~Fla~nLA~l 168 (187)
T PF12830_consen 157 FLLFLAENLATL 168 (187)
T ss_pred HHHHHHHHHhcC
Confidence 566666666654
No 254
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=7.5 Score=38.17 Aligned_cols=243 Identities=15% Similarity=0.200 Sum_probs=118.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCC--HHHHHHHHHHHHHhhCCCchhhH
Q 015687 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT--DDVREQAVWALGNVAGDSPKCRD 193 (402)
Q Consensus 116 i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~~~ 193 (402)
+-.|.+.+++++ ..++..|+.-|+-.-++ .+++.+.. .|..++.+.+ .++.-.|..+||.+...+-. .
T Consensus 454 lALLsdyv~~~~-s~~ri~aIlGLglayaG--sq~e~V~~-----lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn--~ 523 (878)
T KOG2005|consen 454 LALLSDYLQSSS-SIHRIGAILGLGLAYAG--SQREEVLE-----LLSPIMFDTKSPMEVVAFASLSLGMIFVGSCN--E 523 (878)
T ss_pred HHHHHHhccCCC-ceeehHHhhhhHHhhcC--CchHHHHH-----HHhHHhcCCCCchhHHHHHHhhcceeEEecCC--h
Confidence 455667777777 67777777777644333 23343332 5566666644 45777777778877543321 1
Q ss_pred HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhc---c
Q 015687 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS---D 270 (402)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~---~ 270 (402)
.+ ...+++.++..=.........+...-.|.-+.-+.. ..++..+..+..-...++..+--.+..++ .
T Consensus 524 dv-ts~ilqtlmekse~El~d~~~RFL~LGL~llflgkq--------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGT 594 (878)
T KOG2005|consen 524 DV-TSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQ--------ESVDAVVETIKAIEGPIRKHESILVKSCAYAGT 594 (878)
T ss_pred HH-HHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhccc--------chHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Confidence 11 111344444433212234445555555555554432 11222222222222222222222221111 1
Q ss_pred CChHHHHHHHHhCcHHHHHHhcCCCC---hhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHH
Q 015687 271 GTNDKIQAVIEAGVCPRLVELLRHPS---PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC 347 (402)
Q Consensus 271 ~~~~~~~~~~~~~~i~~L~~~L~~~~---~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~ 347 (402)
++.-.++. ..+..+-.... ..-+..|+--++-++.+.+-..+.. +..+-.+|..+ ++.+|+..-
T Consensus 595 Gnvl~Iq~-------q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~-----lR~f~h~l~yg-e~~iRravP 661 (878)
T KOG2005|consen 595 GNVLKIQS-------QLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMV-----LRHFGHLLHYG-EPHIRRAVP 661 (878)
T ss_pred CceEEech-------hhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHH-----HHHHHHHHHcC-CHHHHHHHH
Confidence 11111110 11222222111 1223355555556666555444433 23455666666 777777777
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 348 WTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 348 ~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
.+++-++..+|.. +++..|-+..++.|.++..+|+.+++-+-.
T Consensus 662 Lal~llsvSNPq~-------~vlDtLsk~shd~D~eva~naIfamGLiGA 704 (878)
T KOG2005|consen 662 LALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAMNAIFAMGLIGA 704 (878)
T ss_pred HHHhhhccCCCcc-------hHHHHHHHhccCcchHHHHHHHHHhccccC
Confidence 7777776655542 356666777777777777777777665544
No 255
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.81 E-value=5.3 Score=39.71 Aligned_cols=194 Identities=17% Similarity=0.198 Sum_probs=106.3
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC----CCHHHHHHHHHHHHHhhC----
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS----PTDDVREQAVWALGNVAG---- 186 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~---- 186 (402)
.+..+.+.+.+..-.. .+++..+..+...-..... ..+..+..++.+ ....++..|+-+++++..
T Consensus 358 a~~~i~~~i~~~~~~~--~ea~~~~~~~~~~~~~Pt~-----~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~ 430 (574)
T smart00638 358 ALKFIKQWIKNKKITP--LEAAQLLAVLPHTARYPTE-----EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCV 430 (574)
T ss_pred HHHHHHHHHHcCCCCH--HHHHHHHHHHHHhhhcCCH-----HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhc
Confidence 4566666776654111 2233333333222111111 245666667664 456788888888888763
Q ss_pred CCchhhHHHHhcCChHHHHHHhcc---chhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhcc-C--CChhHHHH
Q 015687 187 DSPKCRDLVLSNGALMPLLAQFNE---HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-S--NDDEVLTD 260 (402)
Q Consensus 187 ~~~~~~~~~~~~g~i~~L~~~l~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~-~--~~~~v~~~ 260 (402)
+.+.+. ..+....++.+...|.. ..+..-+..++.+|.|+-.. ..++.+.+++. . .+..++..
T Consensus 431 ~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~ 499 (574)
T smart00638 431 NTPSCP-DFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLA 499 (574)
T ss_pred CCCCCC-hhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHH
Confidence 222211 11122356666665532 23444456667777776643 44556666665 2 24679999
Q ss_pred HHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCC
Q 015687 261 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY 338 (402)
Q Consensus 261 a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~--~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~ 338 (402)
|+++|..++...+..++ +.+.+++.+ .++++|..|+..+-.. +|.. ..+..+...+....
T Consensus 500 Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~t---~P~~-------~~l~~ia~~l~~E~ 561 (574)
T smart00638 500 AILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPEVRMAAVLVLMET---KPSV-------ALLQRIAELLNKEP 561 (574)
T ss_pred HHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhc---CCCH-------HHHHHHHHHHhhcC
Confidence 99999998865554433 556666644 4567888887766432 2211 22445666666553
Q ss_pred chhHHH
Q 015687 339 KKSIKK 344 (402)
Q Consensus 339 ~~~v~~ 344 (402)
+..|+.
T Consensus 562 ~~QV~s 567 (574)
T smart00638 562 NLQVAS 567 (574)
T ss_pred cHHHHH
Confidence 555543
No 256
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=92.81 E-value=11 Score=37.55 Aligned_cols=132 Identities=15% Similarity=0.102 Sum_probs=83.8
Q ss_pred HHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC--------CCHHHHHHHHHHHHHhhC--CCchhhHHHHhcCChHH
Q 015687 134 EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--------PTDDVREQAVWALGNVAG--DSPKCRDLVLSNGALMP 203 (402)
Q Consensus 134 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~nl~~--~~~~~~~~~~~~g~i~~ 203 (402)
.|+.++..+.+..++.+ + .|+++.+...|.. .+..-.+.|++.++++.. ..+..-.-+++.=+++.
T Consensus 389 aal~fl~~~~sKrke~T--f--qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~h 464 (970)
T COG5656 389 AALFFLIISKSKRKEET--F--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNH 464 (970)
T ss_pred HHHHHHHHHhcccchhh--h--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 35555555555333222 2 3899999998832 234455677787777754 21111223334334555
Q ss_pred HHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCC
Q 015687 204 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (402)
Q Consensus 204 L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~ 272 (402)
++..+ +++..-++..+|.+++.+..+.+. ......+.+....++.+++-.+...|+-++..+..+.
T Consensus 465 v~P~f-~s~ygfL~Srace~is~~eeDfkd--~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~ 530 (970)
T COG5656 465 VIPAF-RSNYGFLKSRACEFISTIEEDFKD--NGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE 530 (970)
T ss_pred hhHhh-cCcccchHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch
Confidence 55566 667777889999999999655332 3334566777778888888889999998888877544
No 257
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.73 E-value=17 Score=39.32 Aligned_cols=112 Identities=17% Similarity=0.205 Sum_probs=70.7
Q ss_pred CcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 015687 283 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ 362 (402)
Q Consensus 283 ~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 362 (402)
|++|.|-.-|.+++..+|..|...+|.+......+... -........+.-+.+. ++.||.+++....++...+|+...
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~-~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSE-TYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcc-cchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence 78888888889999999999999999998765533220 0112233344444455 667777777776666654433322
Q ss_pred HH-----------------------------------HHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 363 AI-----------------------------------IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 363 ~l-----------------------------------~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
.. +.. ++..+.+.+.+.-..||+.|+..|..+-.
T Consensus 337 ~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 337 ASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred HHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 11 111 33444445566788999999988876543
No 258
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.64 E-value=8.9 Score=37.99 Aligned_cols=175 Identities=14% Similarity=0.131 Sum_probs=109.5
Q ss_pred cchhhHHHHHHHHHHHHhhhCC-CCCchhh----hhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 015687 210 EHAKLSMLRNATWTLSNFCRGK-PQPLFEQ----TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 284 (402)
Q Consensus 210 ~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~----~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 284 (402)
+-.+..++.+|+..+.++.--. |...... +..-...+.++|.++-+.|+..|..-++.+... ...++-..+
T Consensus 184 ~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~----fWe~iP~~i 259 (1005)
T KOG1949|consen 184 KARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSK----FWEMIPPTI 259 (1005)
T ss_pred ccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH----HHHHcCHHH
Confidence 5678899999999999887543 3332222 245566788999999999999998877776532 112222222
Q ss_pred ----HHHHHHhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH
Q 015687 285 ----CPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359 (402)
Q Consensus 285 ----i~~L~~~L~-~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~ 359 (402)
+..+..-+. ++..+||......|..+...... ..+++ .++|.+-..|.++ ...||..+.-.|.-|-....-
T Consensus 260 ~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s--h~~le-~~Lpal~~~l~D~-se~VRvA~vd~ll~ik~vra~ 335 (1005)
T KOG1949|consen 260 LIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS--HPLLE-QLLPALRYSLHDN-SEKVRVAFVDMLLKIKAVRAA 335 (1005)
T ss_pred HHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc--hhHHH-HHHHhcchhhhcc-chhHHHHHHHHHHHHHhhhhh
Confidence 233333333 34568999999999888875432 22333 4567777777777 888999988888877554333
Q ss_pred HHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 360 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
+...++ -...++..|..++..+.+.-+..|.|.
T Consensus 336 ~f~~I~---~~d~~l~~L~~d~~~v~rr~~~li~~s 368 (1005)
T KOG1949|consen 336 KFWKIC---PMDHILVRLETDSRPVSRRLVSLIFNS 368 (1005)
T ss_pred hhhccc---cHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 333332 234455556666655555555444443
No 259
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=92.62 E-value=5.2 Score=33.15 Aligned_cols=73 Identities=19% Similarity=0.247 Sum_probs=56.6
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhH
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 193 (402)
.++.++++..+++ ..++..|+.++.-+....--+- ...+|.|+.+..++++.++..|...+..+....+..-.
T Consensus 9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 4677778777888 8999999999988776321111 12689999999999999999999999999876654433
No 260
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=92.54 E-value=0.6 Score=39.01 Aligned_cols=106 Identities=14% Similarity=0.227 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCC----CCHHHHHHHHHHHHHhhcCCC-cchHHHHhCCch
Q 015687 85 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD----DFPQLQFEAAWALTNIASGTS-ENTRVVIDHGAV 159 (402)
Q Consensus 85 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~----~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i 159 (402)
..-...|+..|..++|. ++....+++..+--.+..+|... ..+-++..++.+++.+...++ +....+....++
T Consensus 114 snRvcnaL~lLQclaSh--Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeiv 191 (315)
T COG5209 114 SNRVCNALNLLQCLASH--PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIV 191 (315)
T ss_pred hhHHHHHHHHHHHHhcC--cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHH
Confidence 34445566667666652 33344466665443444555432 236788899999999988544 344566677999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhh
Q 015687 160 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (402)
Q Consensus 160 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (402)
|.++++++.+++--+..|+..++.+..++.+.+
T Consensus 192 PLcLrIme~gSElSktvaifI~qkil~dDvGLq 224 (315)
T COG5209 192 PLCLRIMELGSELSKTVAIFIFQKILGDDVGLQ 224 (315)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccchhHH
Confidence 999999999988889999999999988876543
No 261
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.35 E-value=2.2 Score=43.06 Aligned_cols=311 Identities=15% Similarity=0.121 Sum_probs=156.5
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHH------HhC
Q 015687 83 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV------IDH 156 (402)
Q Consensus 83 ~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~------~~~ 156 (402)
+|..+...++..++.++.. ......+++.|++..|+..=.-+ +.-...-.||..|.+. ....+.+ +-.
T Consensus 365 ~d~~l~~~~~k~~~~l~~h--~kfa~~fv~~~gi~kll~vpr~s---~~~~g~s~cly~~~~~-q~~mervc~~p~~v~~ 438 (1516)
T KOG1832|consen 365 DDSPLLPDVMKLICALAAH--RKFAAMFVERRGILKLLAVPRVS---ETFYGLSSCLYTIGSL-QGIMERVCALPLVVIH 438 (1516)
T ss_pred ccccccHHHHHHHHHHHHh--hHHHHHHHHhhhhHHHhcCCCch---hhhhhHHHHHHHHhhh-hhHHHHHhhccHHHHH
Confidence 4556667778888887653 35566788888887776654322 2333344455555542 1122111 112
Q ss_pred CchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc-------c-----------hhhHHHH
Q 015687 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-------H-----------AKLSMLR 218 (402)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~-------~-----------~~~~~~~ 218 (402)
.++..-+.+|.-....-+..+...+. +|..-...-+.+-.+..+..|+.+++. + .+.+...
T Consensus 439 ~vv~~~~~l~~cs~~~~~~~~~~ff~-~~f~frail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~ 517 (1516)
T KOG1832|consen 439 QVVKLAIELLDCSQDQARKNSALFFA-AAFVFRAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAF 517 (1516)
T ss_pred HHHHHHHHHHhcchhhccchHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhh
Confidence 34455555555322222222211111 110000111333344566666666621 1 1223445
Q ss_pred HHHHHHHHhhhCCC-----C-CchhhhhchHHHHHHhccCC------ChhHHHHHHHHHHHhccCCh-------HHHHHH
Q 015687 219 NATWTLSNFCRGKP-----Q-PLFEQTRPALPALERLIHSN------DDEVLTDACWALSYLSDGTN-------DKIQAV 279 (402)
Q Consensus 219 ~a~~~L~~l~~~~~-----~-~~~~~~~~~l~~L~~lL~~~------~~~v~~~a~~~l~~l~~~~~-------~~~~~~ 279 (402)
..|.+|....+..- . .......+..+..++-+... ..+..+..+|-+-.+....+ ...+.+
T Consensus 518 htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenf 597 (1516)
T KOG1832|consen 518 HTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENF 597 (1516)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHH
Confidence 56666654443320 0 01111122223333322211 12344555665554433222 223456
Q ss_pred HHhCcHHHHHHhcCCC--------ChhhHHHHHHHHHHhhcCChHHHHHHHh-----C--CChHHHHHHhcCC---Cchh
Q 015687 280 IEAGVCPRLVELLRHP--------SPSVLIPALRTVGNIVTGDDMQTQCIIN-----H--QALPCLLDLLTQN---YKKS 341 (402)
Q Consensus 280 ~~~~~i~~L~~~L~~~--------~~~v~~~a~~~l~nl~~~~~~~~~~i~~-----~--~~l~~L~~ll~~~---~~~~ 341 (402)
...+++..++++..-+ -.+....|+.+|..+..-.+-+.+..-. . .++..++..-.-. .+|+
T Consensus 598 lkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpe 677 (1516)
T KOG1832|consen 598 LKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPE 677 (1516)
T ss_pred HHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHH
Confidence 6677777777776422 2245566777776666555544332211 1 1333333332211 2789
Q ss_pred HHHHHHHHHHHHhcCCHHHH-----------------------------------HHHHHcCCHHHHHHHhccCC-----
Q 015687 342 IKKEACWTISNITAGNVNQI-----------------------------------QAIIEAGIIGPLVNLLLNAE----- 381 (402)
Q Consensus 342 v~~~a~~~L~nl~~~~~~~~-----------------------------------~~l~~~~~i~~L~~ll~~~~----- 381 (402)
+++.|..+|.|+....|+.. ..+..+++|..|+.+|+...
T Consensus 678 i~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~a 757 (1516)
T KOG1832|consen 678 IIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTA 757 (1516)
T ss_pred HHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcH
Confidence 99999999999887542211 12234678999999998754
Q ss_pred HHHHHHHHHHHHHhhcCCC
Q 015687 382 FEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 382 ~~v~~~a~~aL~nl~~~~~ 400 (402)
..+|.-||.+|.-|+.+.+
T Consensus 758 D~IRalAc~~L~GLaR~~t 776 (1516)
T KOG1832|consen 758 DCIRALACRVLLGLARDDT 776 (1516)
T ss_pred HHHHHHHHHHHhccccCcH
Confidence 3689999999998887654
No 262
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=92.34 E-value=1.6 Score=38.59 Aligned_cols=157 Identities=18% Similarity=0.155 Sum_probs=92.8
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCC--chHHHHHhhC----CCCHHHHHHHHHHHHHhhCCCch
Q 015687 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG--AVPIFVRLLS----SPTDDVREQAVWALGNVAGDSPK 190 (402)
Q Consensus 117 ~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~lL~----~~~~~v~~~a~~~L~nl~~~~~~ 190 (402)
..+...+..=+ ++-+.-++..++-++.+ +.....+...+ +...+..++. +..+..+-.++++++|+.....
T Consensus 66 ~~~~~~~~~Wp-~~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~- 142 (268)
T PF08324_consen 66 ILLLKILLSWP-PESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP- 142 (268)
T ss_dssp HHHHHHHCCS--CCC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHhCC-CccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-
Confidence 34444443322 24467777777766664 44434443322 2344444432 3577888899999999988766
Q ss_pred hhHHHHhcC--ChHHHHHHhccch---hhHHHHHHHHHHHHhhhCC-CCC-chhhhhchHHHHHHhcc-C-CChhHHHHH
Q 015687 191 CRDLVLSNG--ALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGK-PQP-LFEQTRPALPALERLIH-S-NDDEVLTDA 261 (402)
Q Consensus 191 ~~~~~~~~g--~i~~L~~~l~~~~---~~~~~~~a~~~L~~l~~~~-~~~-~~~~~~~~l~~L~~lL~-~-~~~~v~~~a 261 (402)
.+..+.... .+...+..+.... +..++..++..+.|++-.. ... .......++..+.+.+. . .|++....+
T Consensus 143 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~ 222 (268)
T PF08324_consen 143 GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRL 222 (268)
T ss_dssp CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHH
T ss_pred cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHH
Confidence 456665532 2333333332332 7788889999999997654 111 22233345666666442 2 689999999
Q ss_pred HHHHHHhccCChHHH
Q 015687 262 CWALSYLSDGTNDKI 276 (402)
Q Consensus 262 ~~~l~~l~~~~~~~~ 276 (402)
+-+++++...++...
T Consensus 223 LvAlGtL~~~~~~~~ 237 (268)
T PF08324_consen 223 LVALGTLLSSSDSAK 237 (268)
T ss_dssp HHHHHHHHCCSHHHH
T ss_pred HHHHHHHhccChhHH
Confidence 999999996665443
No 263
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=92.32 E-value=9.6 Score=35.52 Aligned_cols=223 Identities=11% Similarity=0.054 Sum_probs=118.2
Q ss_pred CHHHHHHHHHHHHHhhCCCchhhHHHHhc---CChHHHHHHhc-cchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHH
Q 015687 170 TDDVREQAVWALGNVAGDSPKCRDLVLSN---GALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 245 (402)
Q Consensus 170 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~---g~i~~L~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~ 245 (402)
+..+..+|+.+|+.+..+..-. ..+-+. -++...+..+. ...+..+...+.|+|+.---............++..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~-~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIV-STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA 137 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHH-hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence 7789999999999987554321 111111 13445555552 234556777777777653322111111122223333
Q ss_pred HHHhcc-CCChhHHHHHHHHHHHhccCChHHHHHHHHhC-cHHHHHHhcCCCChhhHHHHHHHHHHhhc--CCh-HHH--
Q 015687 246 LERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAG-VCPRLVELLRHPSPSVLIPALRTVGNIVT--GDD-MQT-- 318 (402)
Q Consensus 246 L~~lL~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-~i~~L~~~L~~~~~~v~~~a~~~l~nl~~--~~~-~~~-- 318 (402)
+..+-. -+...+....+.++.++....+.. .....+ .++.++..+-+....++..|....-.+.. +.. ...
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~--M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~ 215 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQ--MIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKS 215 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence 333322 356778889999999988665533 122223 67788887777777777776555544432 221 111
Q ss_pred -HHHHhC----C-----ChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHcCCHHHHHHHhccCCHHHHHH
Q 015687 319 -QCIINH----Q-----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN-QIQAIIEAGIIGPLVNLLLNAEFEIKKE 387 (402)
Q Consensus 319 -~~i~~~----~-----~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 387 (402)
....+. + +.+.|..++.+. +...-.--+|...-+.-+++. .....+ +..+...-..++++|+.+|.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~d~~~k~~ 293 (372)
T PF12231_consen 216 VLEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSSDPQVKIQ 293 (372)
T ss_pred HHHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCCCHHHHHH
Confidence 112222 2 334467777764 333333445655544434331 111111 113444444567899999999
Q ss_pred HHHHHHHhhc
Q 015687 388 AAWAISNATS 397 (402)
Q Consensus 388 a~~aL~nl~~ 397 (402)
|..+-..++.
T Consensus 294 A~~aW~~liy 303 (372)
T PF12231_consen 294 AFKAWRRLIY 303 (372)
T ss_pred HHHHHHHHHH
Confidence 9888776653
No 264
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=91.78 E-value=11 Score=35.10 Aligned_cols=305 Identities=15% Similarity=0.165 Sum_probs=154.2
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCch-hHHhhcCcHHHHHHhhc----C------CCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 82 SDDRNIQLDATTQFRKLLSIERSPPI-NEVIQSGVVPRFIEFLS----R------DDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 82 s~~~~~~~~a~~~l~~l~s~~~~~~~-~~~~~~g~i~~L~~lL~----~------~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
+.+.+.+..|-..|.+.+...++.+. ..+.+ -++.|+++++ + +.+..+..+|+.+|+.+... ++..
T Consensus 4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~-~~i~ 80 (372)
T PF12231_consen 4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYH-PEIV 80 (372)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHcc-HHHH
Confidence 45566667777667666655433332 22222 2455555443 1 11267889999999998864 4433
Q ss_pred HHHHhCC---chHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc----chhhHHHHHHH
Q 015687 151 RVVIDHG---AVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE----HAKLSMLRNAT 221 (402)
Q Consensus 151 ~~~~~~g---~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~----~~~~~~~~~a~ 221 (402)
..+-+.- ++...+..+.+ .+..+....+|+|..--.. ..++....+..++..+.. -+...+....+
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~-----~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL 155 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS-----PKIMTSDRVERLLAALHNIKNRFPSKSIISERL 155 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC-----CcccchhhHHHHHHHHHHhhccCCchhHHHHHH
Confidence 3333221 34445555543 4566777777777653222 223444455555555421 34567778888
Q ss_pred HHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhcc--CCh-HHHH---HHHHh----C-----cHH
Q 015687 222 WTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD--GTN-DKIQ---AVIEA----G-----VCP 286 (402)
Q Consensus 222 ~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~--~~~-~~~~---~~~~~----~-----~i~ 286 (402)
.++.+|....|..-......=+|.++..+-+....++..|...+..+.. +.. .... ...+. + +.+
T Consensus 156 ~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 235 (372)
T PF12231_consen 156 NIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCE 235 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHH
Confidence 8888888775544333334456666666666677777666555544431 111 1111 11111 2 233
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHhhcCChH-HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHh---cCCHHHHH
Q 015687 287 RLVELLRHPSPSVLIPALRTVGNIVTGDDM-QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT---AGNVNQIQ 362 (402)
Q Consensus 287 ~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~-~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~---~~~~~~~~ 362 (402)
.+..++.+.+......-+|..--..-+... .....+ ...+...-..++++ ++.+|..|..+=..+. ..++....
T Consensus 236 ~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy~~~~~~~~~~ 313 (372)
T PF12231_consen 236 RLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIYASNPNELTSP 313 (372)
T ss_pred HHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcCCccccH
Confidence 455555553333333333433333223221 111111 13444555566777 8888887754333222 22222223
Q ss_pred HHHHcCCHHHHHHHhcc-CCH----HHHHHHHHHHHHhhc
Q 015687 363 AIIEAGIIGPLVNLLLN-AEF----EIKKEAAWAISNATS 397 (402)
Q Consensus 363 ~l~~~~~i~~L~~ll~~-~~~----~v~~~a~~aL~nl~~ 397 (402)
..+.- +..++...++. ... .++..+...++|+..
T Consensus 314 k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 314 KRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred HHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence 33332 23333444443 233 677778888877754
No 265
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=91.65 E-value=13 Score=35.48 Aligned_cols=273 Identities=10% Similarity=0.101 Sum_probs=124.1
Q ss_pred HHHHHHhhcC---CCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC-CCHHHHHHHHHHHHHhhC----C
Q 015687 116 VPRFIEFLSR---DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAG----D 187 (402)
Q Consensus 116 i~~L~~lL~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~----~ 187 (402)
+..|..++.. ..++.+-....+++..+-.+-......+++ ..+..+....++ .++.--.....+++.+.. .
T Consensus 28 l~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~-~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~ 106 (435)
T PF03378_consen 28 LQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQ-HLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEA 106 (435)
T ss_dssp HHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHH-HHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GG
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCC
Confidence 4445555543 222444444455544433332233333332 133333333344 355555555555555543 2
Q ss_pred CchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC-CCchhhhhchHHHHHHhc-cCCChhHHHHHHHHH
Q 015687 188 SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLI-HSNDDEVLTDACWAL 265 (402)
Q Consensus 188 ~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l 265 (402)
+++.. .-++...+|.+..+| +.+-.+....+...++.|.+..+ .........++|.|+.-. -.....+ -...+.|
T Consensus 107 ~~~~v-~~~E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL 183 (435)
T PF03378_consen 107 DPEAV-SQFEEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLL 183 (435)
T ss_dssp GHH----HHHHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHH
T ss_pred ChhHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHH
Confidence 22211 123455777888888 55556677777888888877655 222233345555544322 1111222 3333444
Q ss_pred HHhccCChHHHHHHHHhCc----HHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH-HHHHHhCCChHHHHHHhcCCCch
Q 015687 266 SYLSDGTNDKIQAVIEAGV----CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-TQCIINHQALPCLLDLLTQNYKK 340 (402)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~----i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~-~~~i~~~~~l~~L~~ll~~~~~~ 340 (402)
..+....... +...|- +...-.++.+... -..+...|..+...-+.. .+..+. .++..+..-|+++..+
T Consensus 184 ~a~i~k~~~~---i~~~~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~ 257 (435)
T PF03378_consen 184 QAYIKKDPSF---IVANNQLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTE 257 (435)
T ss_dssp HHHHHHHGGG-------S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--H
T ss_pred HHHHHhCchh---hcchhhHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcH
Confidence 4433222222 122222 2223334444432 245777777777655431 121121 3444555555544366
Q ss_pred hHHHHHHHHHHHHhc-CCHHHHHHHHH---cCCHHHHHHHh-----cc-CCHHHHHHHHHHHHHhhcC
Q 015687 341 SIKKEACWTISNITA-GNVNQIQAIIE---AGIIGPLVNLL-----LN-AEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 341 ~v~~~a~~~L~nl~~-~~~~~~~~l~~---~~~i~~L~~ll-----~~-~~~~v~~~a~~aL~nl~~~ 398 (402)
...+.-+..++.++. .+++..-..++ .|++..++.-+ .. ..+.=|+-++-+++++...
T Consensus 258 kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~e 325 (435)
T PF03378_consen 258 KFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCE 325 (435)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhc
Confidence 666666666666654 45666655554 56655555532 11 3344477777777776643
No 266
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=91.53 E-value=0.54 Score=39.86 Aligned_cols=85 Identities=13% Similarity=0.180 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHhccCCCCchhHHhhcC-------cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch-HHHHhC
Q 015687 85 RNIQLDATTQFRKLLSIERSPPINEVIQSG-------VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT-RVVIDH 156 (402)
Q Consensus 85 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g-------~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~ 156 (402)
.+-|..|+.+|+++.-. +.+++.++..+ ++..|+++|....++..++-|+-.|.+++.++.... ....+.
T Consensus 138 lSPqrlaLEaLcKLsV~--e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~ 215 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVI--ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQK 215 (257)
T ss_pred CCHHHHHHHHHHHhhee--ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhh
Confidence 45788999999998543 34444444333 566777778776658899999999999999866655 444557
Q ss_pred CchHHHHHhhCCCCH
Q 015687 157 GAVPIFVRLLSSPTD 171 (402)
Q Consensus 157 g~i~~L~~lL~~~~~ 171 (402)
+.|..|+.++++...
T Consensus 216 ~~i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 216 PCISHLIAFIEDAEQ 230 (257)
T ss_pred chHHHHHHHHHHHHH
Confidence 899999999976443
No 267
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=91.45 E-value=5.1 Score=40.39 Aligned_cols=158 Identities=16% Similarity=0.202 Sum_probs=110.5
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
..|..++..|.|.|......+-..+...+..++.+ + ++..|+++.-+..+ ..|+.+|..+-. |..+
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~----~----l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K 69 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREP----W----LVNGLVDYYLSTNS----QRALEILVGVQE--PHDK 69 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH----H----HHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH
Confidence 35789999999999988888888888887654222 1 36777776544442 235556654422 3212
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
..+..|-.++.. +.-|-.++..|+.+....|..--.+.+...+..|+.+|..+.+..+...|+.+|.-|.-.
T Consensus 70 ------~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 70 ------HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred ------HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 234555556654 466778999999999887766778888899999999998888999999999998888765
Q ss_pred CCCCchhhhhchHHHHHHhc
Q 015687 231 KPQPLFEQTRPALPALERLI 250 (402)
Q Consensus 231 ~~~~~~~~~~~~l~~L~~lL 250 (402)
-|..-......++.++..++
T Consensus 142 ip~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 142 IPSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred ccchhhHHHHHHHHHHHHHH
Confidence 55444444455555555555
No 268
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.43 E-value=2.2 Score=37.71 Aligned_cols=139 Identities=16% Similarity=0.166 Sum_probs=93.2
Q ss_pred HHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHh
Q 015687 203 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA 282 (402)
Q Consensus 203 ~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 282 (402)
..+..| .+.+-......+-.+..|+...+..-......++..+++-+++....|...||.+++.+...-.+.+...
T Consensus 92 ~~l~~L-~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~--- 167 (334)
T KOG2933|consen 92 QALKKL-SSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE--- 167 (334)
T ss_pred HHHHHh-chHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 344444 4555555556666666666655544444556777888888888888899999999998876555444432
Q ss_pred CcHHHHHHhc-C---CCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 283 GVCPRLVELL-R---HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 283 ~~i~~L~~~L-~---~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
++.++..| . .++--+++.|-.+|..++..-..+ .+++.|+..+.+. .+.++..++.+..+...
T Consensus 168 --ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~-n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 168 --LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHS-NPRVRAKAALCFSRCVI 234 (334)
T ss_pred --HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhh-chhhhhhhhccccccce
Confidence 33344433 2 234458888999998887653322 4567788888888 89999988888877664
No 269
>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []. Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.
Probab=91.40 E-value=0.18 Score=29.44 Aligned_cols=38 Identities=34% Similarity=0.394 Sum_probs=25.3
Q ss_pred HHhhhccCCCCchHHhhhhHHHHHHHHHHhhhHHHHhhh
Q 015687 11 VRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKR 49 (402)
Q Consensus 11 ~~~~~~k~~~~~~~~r~~r~~~~~~lRk~~r~~~~~~kr 49 (402)
+|...||+..++.+.-+|| +...+.-|.+|-+.++.-|
T Consensus 2 PR~sqYK~~~~~~~Q~eRR-~~~Le~QK~kR~d~~~~aR 39 (40)
T PF11538_consen 2 PRLSQYKNKGSALDQEERR-REFLERQKNKRLDYVNHAR 39 (40)
T ss_dssp TTCSCTT-TTTSCSHHHHH-HHHHHHHHSHHSHHHHHHH
T ss_pred ccHHHhhcccchHhHHHHH-HHHHHHHHHHhHHHHHhcc
Confidence 5788999854555555545 4556777888888777655
No 270
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.25 E-value=18 Score=36.50 Aligned_cols=265 Identities=12% Similarity=0.130 Sum_probs=120.6
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHh--CCchHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCch-hhHH
Q 015687 119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID--HGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPK-CRDL 194 (402)
Q Consensus 119 L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~-~~~~ 194 (402)
+++++++.++--++..++..+.-...+-.-..+.+.. ......+.+++.. +.-+.+...+.+|+.+.....+ .+..
T Consensus 531 ~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~ 610 (978)
T KOG1993|consen 531 FLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPY 610 (978)
T ss_pred HHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHH
Confidence 3445554433445555555555554432222222221 1223333344432 3445566666777766543221 1111
Q ss_pred HHhcCChHHHHHHhccc-hhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCCh---hHHHHHH--H--HHH
Q 015687 195 VLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD---EVLTDAC--W--ALS 266 (402)
Q Consensus 195 ~~~~g~i~~L~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~---~v~~~a~--~--~l~ 266 (402)
... ++..+-.+-..+ .++-++.....++.|+...-.........-++|++--...-+.| ...+++. | .|.
T Consensus 611 ~~~--ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~ 688 (978)
T KOG1993|consen 611 AST--IVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLM 688 (978)
T ss_pred HHH--HHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHh
Confidence 111 122222222222 34455666677888888765444443334444444333322222 2344443 2 233
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhc-CChHHHHHHHhCCChHHHHHHhcCCCchhHHHH
Q 015687 267 YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT-GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE 345 (402)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~-~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~ 345 (402)
|...-.++ +. +++|.+..++....+..+ .++.++..-.- .+....+ -...|+...+..++.+- ..+-...
T Consensus 689 n~~~l~p~----ll--~L~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~~fl~-~y~~~i~k~~~~~l~dv-r~egl~a 759 (978)
T KOG1993|consen 689 NSQKLTPE----LL--LLFPHLLYIIEQSTENLP-TVLMIISSYILLDNTVFLN-DYAFGIFKKLNDLLDDV-RNEGLQA 759 (978)
T ss_pred cccccCHH----HH--HHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHHh-hHHHHHH
Confidence 33222222 22 457777777754443332 33333333222 2221111 12236777777777655 4444445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHh
Q 015687 346 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNA 395 (402)
Q Consensus 346 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl 395 (402)
.+.++.++...++ ........+++|.+...+-. +.|-+-..-+..++.+
T Consensus 760 vLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi 810 (978)
T KOG1993|consen 760 VLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARI 810 (978)
T ss_pred HHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHH
Confidence 5555555555443 45555667777777776533 3344444444444433
No 271
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=91.07 E-value=2.7 Score=47.85 Aligned_cols=203 Identities=13% Similarity=0.152 Sum_probs=112.1
Q ss_pred HHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC
Q 015687 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 232 (402)
....+.+..+...+.++.-.+++.+...+|+++..+|.+.-..+....+..+-.+. .+.-.-+...+..-+..+....+
T Consensus 561 laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~-~sg~~r~~~~~a~~~~~~i~~~~ 639 (2341)
T KOG0891|consen 561 LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELE-FSGMARTKEESAKLLCELIISSP 639 (2341)
T ss_pred hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhh-hcchHHhHHHHHHHhhHHHHHHH
Confidence 44455666677777888889999999999999987774322211111111111111 11111111111111111111111
Q ss_pred CCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-CCChhhHHHHHHHHHHhh
Q 015687 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIV 311 (402)
Q Consensus 233 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~-~~~~~v~~~a~~~l~nl~ 311 (402)
.-....+...+..++..+...+..+...+..++..|+..........++ ..++.+.+.+. ..+..-+..+++++++++
T Consensus 640 ~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~ 718 (2341)
T KOG0891|consen 640 VLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLE 718 (2341)
T ss_pred HHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhh
Confidence 1122233455567777778888888888888888888544433333333 44555555553 345567788999999998
Q ss_pred cCChHHHHHHHh-CCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCC
Q 015687 312 TGDDMQTQCIIN-HQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357 (402)
Q Consensus 312 ~~~~~~~~~i~~-~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~ 357 (402)
+..........+ .-++..+...+.......++.++...++++....
T Consensus 719 s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d 765 (2341)
T KOG0891|consen 719 SSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALD 765 (2341)
T ss_pred cccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccc
Confidence 754321111111 1345556666666656678888888888776643
No 272
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=90.88 E-value=13 Score=34.08 Aligned_cols=110 Identities=20% Similarity=0.207 Sum_probs=81.8
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHhhc-CChHHHHHHHhC-C-ChHHHHHHhcCCC----c--------hhHHHHHHHH
Q 015687 285 CPRLVELLRHPSPSVLIPALRTVGNIVT-GDDMQTQCIINH-Q-ALPCLLDLLTQNY----K--------KSIKKEACWT 349 (402)
Q Consensus 285 i~~L~~~L~~~~~~v~~~a~~~l~nl~~-~~~~~~~~i~~~-~-~l~~L~~ll~~~~----~--------~~v~~~a~~~ 349 (402)
+..+...|+.....+..++++.+..++. .+......++.. + -.+.+.+++.... . +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6788888988888899999999999999 665666667654 2 2445666663321 1 2788887765
Q ss_pred HHHHh-cCCHHHHHHHHH-cCCHHHHHHHhccCCHHHHHHHHHHHHH
Q 015687 350 ISNIT-AGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISN 394 (402)
Q Consensus 350 L~nl~-~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~n 394 (402)
+..+. .+++.....+++ .+.+..+..-|..+++++....+.+|..
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~ 184 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKD 184 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHH
Confidence 55444 578888888775 6678889999988889999888888875
No 273
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=90.59 E-value=0.78 Score=38.93 Aligned_cols=87 Identities=20% Similarity=0.236 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHhhcCChHHHHHHHh-------CCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HcCC
Q 015687 298 SVLIPALRTVGNIVTGDDMQTQCIIN-------HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII-EAGI 369 (402)
Q Consensus 298 ~v~~~a~~~l~nl~~~~~~~~~~i~~-------~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~ 369 (402)
.-+..|+.+++.++-... +.+.++. +.++..|.+++...+++..|+-|+-.|.|++.++......+. +.+.
T Consensus 139 SPqrlaLEaLcKLsV~e~-NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIEN-NVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhheecc-CcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 457889999999886432 3333332 245667888887777889999999999999998776665544 6889
Q ss_pred HHHHHHHhccCCHHHH
Q 015687 370 IGPLVNLLLNAEFEIK 385 (402)
Q Consensus 370 i~~L~~ll~~~~~~v~ 385 (402)
+..|+.++++.+...+
T Consensus 218 i~~Li~FiE~a~~~~~ 233 (257)
T PF12031_consen 218 ISHLIAFIEDAEQNAH 233 (257)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999987665433
No 274
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=90.49 E-value=2.7 Score=37.42 Aligned_cols=138 Identities=12% Similarity=0.169 Sum_probs=81.2
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch-HHHHhCCchHHHHH----hhC--------CCCHHHHHHHHHHH
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT-RVVIDHGAVPIFVR----LLS--------SPTDDVREQAVWAL 181 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~----lL~--------~~~~~v~~~a~~~L 181 (402)
++|.++.++++.+ +.++..++.+|..+....+... ..+...|..+.+-. ++. .++..+...+.-+|
T Consensus 120 iiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 6899999999988 9999999999999988543332 23566675544433 333 34566778888888
Q ss_pred HHhhCC----CchhhHHHHhcCChHHHHHHhccc---hhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCC
Q 015687 182 GNVAGD----SPKCRDLVLSNGALMPLLAQFNEH---AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN 253 (402)
Q Consensus 182 ~nl~~~----~~~~~~~~~~~g~i~~L~~~l~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~ 253 (402)
..++.- +...+......-.-+.++.-+... ..+.+....+..+..+...-..........+++.+.+.+.+.
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 887431 111122221111112122222122 246666666666666665533344455567777777766554
No 275
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=90.44 E-value=1 Score=35.44 Aligned_cols=74 Identities=12% Similarity=0.080 Sum_probs=59.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~ 144 (402)
+++..+.+.|++.++..+..|+..|-.++..-.......+...+++..|++++....++.++..++..+...+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999887653234456677889999999999854448899999988887664
No 276
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=90.20 E-value=15 Score=33.68 Aligned_cols=155 Identities=17% Similarity=0.119 Sum_probs=101.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhc-CCCcchHHHHhC--CchHHHHHhhCC-----CC--------HHHHHHHHH
Q 015687 116 VPRFIEFLSRDDFPQLQFEAAWALTNIAS-GTSENTRVVIDH--GAVPIFVRLLSS-----PT--------DDVREQAVW 179 (402)
Q Consensus 116 i~~L~~lL~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~--g~i~~L~~lL~~-----~~--------~~v~~~a~~ 179 (402)
++.+...|.+.. ..+...++..|..++. ........+... --.+.|..++.- .. +.+|...+.
T Consensus 58 ~k~lyr~L~~~~-~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSSK-PSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcCc-HHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 778888888888 7888999999999998 655666666653 223455666532 11 278888887
Q ss_pred HHHHhhC-CCchhhHHHHh-cCChHHHHHHhccchhhHHHHHHHHHHH-HhhhCCC--CCch--hhhhchHHHHHHhccC
Q 015687 180 ALGNVAG-DSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLS-NFCRGKP--QPLF--EQTRPALPALERLIHS 252 (402)
Q Consensus 180 ~L~nl~~-~~~~~~~~~~~-~g~i~~L~~~l~~~~~~~~~~~a~~~L~-~l~~~~~--~~~~--~~~~~~l~~L~~lL~~ 252 (402)
.+..+.. .++..+..+++ .+.+..+.+-+ ..++.++....+.+|. ++..+.. .... .....++..|..+...
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l-~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGL-RKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcc-cCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence 7666654 45555555554 45677777777 4466677777777776 4554431 1111 2236678888887776
Q ss_pred CCh----hHHHHHHHHHHHhccCC
Q 015687 253 NDD----EVLTDACWALSYLSDGT 272 (402)
Q Consensus 253 ~~~----~v~~~a~~~l~~l~~~~ 272 (402)
.++ .+...+-..|..+|..+
T Consensus 216 ~~~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 216 DGEDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred cCCcccchHHHHHHHHHHHHhcCC
Confidence 666 67777777777766543
No 277
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=90.04 E-value=1.2 Score=35.15 Aligned_cols=75 Identities=16% Similarity=0.134 Sum_probs=61.2
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcC
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG 145 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~ 145 (402)
+++..+.+.|++.++.++..|+..|-.++..-......++...+++..|++++....++.++..++..+...+..
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 467888899999999999999999999876543344567788899999999998844489999999999887653
No 278
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=89.92 E-value=12 Score=32.41 Aligned_cols=135 Identities=20% Similarity=0.214 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHH--------HHHHHHHHHHHhhCCCchhhHHHHhcCCh
Q 015687 130 QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD--------VREQAVWALGNVAGDSPKCRDLVLSNGAL 201 (402)
Q Consensus 130 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~--------v~~~a~~~L~nl~~~~~~~~~~~~~~g~i 201 (402)
.....|+..|+.+-. ..+++.++++++.++.. +.+....++..+ -.|-+
T Consensus 57 ~~~~~a~~LLaq~re-----------~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv------------~~G~~ 113 (249)
T PF06685_consen 57 NLHFYALYLLAQFRE-----------ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASV------------GDGDI 113 (249)
T ss_pred HHHHHHHHHHHHHhh-----------hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHH------------hCCCH
Confidence 345556666655433 25799999999765442 122222233333 24556
Q ss_pred HHHHHHhccc-hhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhcc-CChHHHHHH
Q 015687 202 MPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD-GTNDKIQAV 279 (402)
Q Consensus 202 ~~L~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~ 279 (402)
+.|..++.+. -+.-++..++.+|..+....+......+.-+-..+-..+..++..+....+..+..|.. .-...+..+
T Consensus 114 ~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~ 193 (249)
T PF06685_consen 114 EPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKA 193 (249)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHH
Confidence 6777777443 36678889999999999987665555544444444444544444433333333333321 122344556
Q ss_pred HHhCcHHH
Q 015687 280 IEAGVCPR 287 (402)
Q Consensus 280 ~~~~~i~~ 287 (402)
.+.|.++.
T Consensus 194 f~~~lVd~ 201 (249)
T PF06685_consen 194 FEDGLVDP 201 (249)
T ss_pred HHcCCCCc
Confidence 66666654
No 279
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=89.44 E-value=5 Score=36.87 Aligned_cols=209 Identities=19% Similarity=0.165 Sum_probs=108.1
Q ss_pred hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 015687 112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191 (402)
Q Consensus 112 ~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 191 (402)
...++..|..++..+.++......+.+|..-...- ..-+...++..+..-+.+..+.+|..-+..++.+....+..
T Consensus 20 s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~ 95 (339)
T PF12074_consen 20 SSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNS 95 (339)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCc
Confidence 34457777888876554676777777776544321 01112245677777778777779988888888887511110
Q ss_pred hHHHHhcCChHHHHHHhcc---chhhHHH---HHHHHHHHHhhhCC-----------------CCCchhhhhchHHHHHH
Q 015687 192 RDLVLSNGALMPLLAQFNE---HAKLSML---RNATWTLSNFCRGK-----------------PQPLFEQTRPALPALER 248 (402)
Q Consensus 192 ~~~~~~~g~i~~L~~~l~~---~~~~~~~---~~a~~~L~~l~~~~-----------------~~~~~~~~~~~l~~L~~ 248 (402)
...-.-..+++.|+..+.. ++-+... -.++.++..++... +.+.+.... +
T Consensus 96 ~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~-------k 168 (339)
T PF12074_consen 96 DSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSE-------K 168 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCH-------H
Confidence 0111122367777777632 1111111 11111111111111 111111111 1
Q ss_pred hccC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHhCC
Q 015687 249 LIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQ 325 (402)
Q Consensus 249 lL~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~--~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~ 325 (402)
++.. .+++.....+.++..+..+.......-.....-..++.++.+. .+.+|..|+.++..+...++.. +...
T Consensus 169 vyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~ 244 (339)
T PF12074_consen 169 VYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKS 244 (339)
T ss_pred HHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHH
Confidence 2222 3444455566666555543332211111223456677777777 7899999999999999887763 2333
Q ss_pred ChHHHHHHhc
Q 015687 326 ALPCLLDLLT 335 (402)
Q Consensus 326 ~l~~L~~ll~ 335 (402)
++..+...+.
T Consensus 245 li~~l~~~l~ 254 (339)
T PF12074_consen 245 LISGLWKWLS 254 (339)
T ss_pred HHHHHHHHHH
Confidence 4445555553
No 280
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.12 E-value=5.9 Score=41.10 Aligned_cols=282 Identities=17% Similarity=0.151 Sum_probs=155.7
Q ss_pred hhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcC-CCcchHHHHhCC
Q 015687 79 GVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG-TSENTRVVIDHG 157 (402)
Q Consensus 79 ~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g 157 (402)
.|++++.+.+-..+..+.++.+.. ..+....-+.--+|.|+.-+..-. ..+|...+.+|..-... +.--.+.
T Consensus 475 FLkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvncvPeqE----- 547 (2799)
T KOG1788|consen 475 FLKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVNCVPEQE----- 547 (2799)
T ss_pred HHHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhccCcHHH-----
Confidence 445778888888888888887643 333333445566888888887666 57777777766543321 0000111
Q ss_pred chHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccch---hhHHHHHHHHHHHHhhhCCC-
Q 015687 158 AVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKP- 232 (402)
Q Consensus 158 ~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~---~~~~~~~a~~~L~~l~~~~~- 232 (402)
+-.|+-+|+.+ ...+....+.....+...+..+++.+.+-|.++.|-..+.++. .++- ....+.....+|
T Consensus 548 -LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdq----ysgvsehydrnps 622 (2799)
T KOG1788|consen 548 -LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQ----YSGVSEHYDRNPS 622 (2799)
T ss_pred -HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcch----hhhHHHHhhcCCC
Confidence 22345566654 3445555666666666777778899999999999888775422 0000 011112222221
Q ss_pred CCchhhh---hchHHHHHHhccCCC--hhH------HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHH
Q 015687 233 QPLFEQT---RPALPALERLIHSND--DEV------LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301 (402)
Q Consensus 233 ~~~~~~~---~~~l~~L~~lL~~~~--~~v------~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~ 301 (402)
.+.+... ...+-.--.++++.. ..+ ....-.+|..+.....+....+.+..++..+++++ -++..|.
T Consensus 623 s~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfl--indehRS 700 (2799)
T KOG1788|consen 623 SPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFL--INDEHRS 700 (2799)
T ss_pred CchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEee--echHHHH
Confidence 1111110 011101111222211 011 11112345556666666667788888888888888 3455688
Q ss_pred HHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCC-----------chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCH
Q 015687 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-----------KKSIKKEACWTISNITAGNVNQIQAIIEAGII 370 (402)
Q Consensus 302 ~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~-----------~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i 370 (402)
..++++..+....+.+.. ++-+-.++..|+++. ..........++..+..-+......+-+++++
T Consensus 701 slLrivscLitvdpkqvh----hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGF 776 (2799)
T KOG1788|consen 701 SLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGF 776 (2799)
T ss_pred HHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccH
Confidence 889999988876664322 223445666666531 12344555566666664334444455577888
Q ss_pred HHHHHHhc
Q 015687 371 GPLVNLLL 378 (402)
Q Consensus 371 ~~L~~ll~ 378 (402)
..|...|.
T Consensus 777 slLlttLh 784 (2799)
T KOG1788|consen 777 SLLLTTLH 784 (2799)
T ss_pred HHHHHHHH
Confidence 77777764
No 281
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.07 E-value=22 Score=36.09 Aligned_cols=156 Identities=13% Similarity=0.066 Sum_probs=77.5
Q ss_pred HhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHH-hhCC--CCHHHHHHHHHHHHHhhC
Q 015687 110 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSS--PTDDVREQAVWALGNVAG 186 (402)
Q Consensus 110 ~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~--~~~~v~~~a~~~L~nl~~ 186 (402)
+.+.+.+...-.-|..+|...-+..|+..+..++...+.....++.. .+..+++ +..+ .+..-.+.+++....++.
T Consensus 357 lFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~-~v~~~l~~y~~nPS~nWk~kd~aiyL~talai 435 (960)
T KOG1992|consen 357 LFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSS-EVQRLLDQYSKNPSGNWKKKDRAIYLVTALAI 435 (960)
T ss_pred HhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHhccCCCccccccchhhhhhHHHHh
Confidence 33444444444555544423345667777777887654444444432 2333333 4443 344445667777777764
Q ss_pred CCchhhHHHHhcC----ChHHHHH----Hhcc---chhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCCh
Q 015687 187 DSPKCRDLVLSNG----ALMPLLA----QFNE---HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD 255 (402)
Q Consensus 187 ~~~~~~~~~~~~g----~i~~L~~----~l~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 255 (402)
.....+.-+.... .+..+.. -|.+ ...+-++..+. ..+..............++|.++..|+.+..
T Consensus 436 k~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aI---Ky~~~FR~ql~~~~lm~~~p~li~~L~a~s~ 512 (960)
T KOG1992|consen 436 KGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAI---KYIYTFRNQLGKEHLMALLPRLIRFLEAESR 512 (960)
T ss_pred hcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhccc---ceeeeecccCChHHHHHHHHHHHHhccCcch
Confidence 4332211111111 1111111 1111 11122222221 1221111233334556789999999999999
Q ss_pred hHHHHHHHHHHHhc
Q 015687 256 EVLTDACWALSYLS 269 (402)
Q Consensus 256 ~v~~~a~~~l~~l~ 269 (402)
-+...|+.++-.+.
T Consensus 513 vvhsYAA~aiEkil 526 (960)
T KOG1992|consen 513 VVHSYAAIAIEKLL 526 (960)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887764
No 282
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=88.90 E-value=2.7 Score=32.98 Aligned_cols=75 Identities=13% Similarity=0.051 Sum_probs=62.3
Q ss_pred CchHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
.++..|.+-|.+.++.++-.|+..|-.+..+. ..+...+.+.++++.|+.++....++.++..++..+...+...
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 35777777788889999999999999888774 5578888889999999999966778889999998888887665
No 283
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=88.68 E-value=9.1 Score=29.64 Aligned_cols=75 Identities=12% Similarity=0.009 Sum_probs=61.7
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch-hhHHHHhcCChHHHHHHhcc--chhhHHHHHHHHHHHHhhhCCC
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK-CRDLVLSNGALMPLLAQFNE--HAKLSMLRNATWTLSNFCRGKP 232 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~~g~i~~L~~~l~~--~~~~~~~~~a~~~L~~l~~~~~ 232 (402)
++..|.+-|.++++.++..|+.+|-.+..++.. ++..+....++..++.++.. ..+..++..+...+.......+
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 577778888889999999999999999877654 77777777888889999865 4688899999999888887653
No 284
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=88.51 E-value=7.2 Score=41.25 Aligned_cols=237 Identities=20% Similarity=0.250 Sum_probs=132.3
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCc--------HHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGV--------VPRFIEFLSRDDFPQLQFEAAWALTNI 142 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~--------i~~L~~lL~~~~~~~~~~~a~~~L~~l 142 (402)
+.+..|++.+-+...+.+.-++.+++.++...........++.-+ +..+=++..++-...++..++|+|+.+
T Consensus 77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~ 156 (1549)
T KOG0392|consen 77 SFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAY 156 (1549)
T ss_pred HHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHH
Confidence 456788888889999999999999999986542222122222211 122222222222246888899999887
Q ss_pred hcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHh--cCChHHHHHHhccchhhHHHHHH
Q 015687 143 ASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS--NGALMPLLAQFNEHAKLSMLRNA 220 (402)
Q Consensus 143 ~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~--~g~i~~L~~~l~~~~~~~~~~~a 220 (402)
..+..+. .+. ..+..+.+++..++.+++...+..+..... ..++.+.. ..+++..+.-+ .+.+..++..+
T Consensus 157 l~~~~~s--~~~--~~~~il~q~~~q~~w~ir~Ggll~iky~~a---ir~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~a 228 (1549)
T KOG0392|consen 157 LKHMDES--LIK--ETLDILLQMLRQPNWEIRHGGLLGIKYNVA---IRQDLLFQLLNLVLDFVIEGL-EDSDDDVRSVA 228 (1549)
T ss_pred HHhhhhH--hhH--HHHHHHHHHHcCcchhheechHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhh-hhcchHHHHHH
Confidence 7642221 111 356777788877777776665555543321 11222221 01233344444 56677888888
Q ss_pred HHHHHHhhhCCCCCchhhhhchHHHHHHhccCCCh-hH-HHHHHHHHHHhccCCh--HH-HHHHHHhCcHHHHHHhcCCC
Q 015687 221 TWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD-EV-LTDACWALSYLSDGTN--DK-IQAVIEAGVCPRLVELLRHP 295 (402)
Q Consensus 221 ~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~v-~~~a~~~l~~l~~~~~--~~-~~~~~~~~~i~~L~~~L~~~ 295 (402)
+.++.......+......+..++..+...+..-|. .- .......+..++...+ +. .+.-.+.|++|.+..++.+.
T Consensus 229 a~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~ 308 (1549)
T KOG0392|consen 229 AQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHT 308 (1549)
T ss_pred HHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHH
Confidence 88877766654333333334444444444432222 00 1111122233333221 00 11123358999999999998
Q ss_pred ChhhHHHHHHHHHHhhcCCh
Q 015687 296 SPSVLIPALRTVGNIVTGDD 315 (402)
Q Consensus 296 ~~~v~~~a~~~l~nl~~~~~ 315 (402)
-..++..++..+..+....+
T Consensus 309 i~sv~~a~l~~l~~lle~~~ 328 (1549)
T KOG0392|consen 309 ISSVRRAALETLAMLLEADD 328 (1549)
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 88899999999988876543
No 285
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=88.21 E-value=1.8 Score=33.58 Aligned_cols=74 Identities=9% Similarity=0.021 Sum_probs=57.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHH-HHHHHHHHHHHhhc
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ-LQFEAAWALTNIAS 144 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~-~~~~a~~~L~~l~~ 144 (402)
+++..+.+.|++.++..+..|+..|-.++..-..+...++...+++..|+.++....... ++..++..+...+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 467888889999999999999999999876533344466778889999999998765333 88888888876654
No 286
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=87.99 E-value=3.1 Score=34.92 Aligned_cols=98 Identities=9% Similarity=0.075 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC----CCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHH
Q 015687 299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ----NYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPL 373 (402)
Q Consensus 299 v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~----~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L 373 (402)
-...|+..+.-++++ ++....++++.+--.+..+|.. +....+|-.+..+++.+.. ++++.+..+....++|.+
T Consensus 116 RvcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 116 RVCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred HHHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 345667777666664 4455556666553344444432 2235688899999999997 688888999999999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhc
Q 015687 374 VNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 374 ~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
+++++.++.-.+--|+..+..+..
T Consensus 195 LrIme~gSElSktvaifI~qkil~ 218 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILG 218 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhc
Confidence 999999888778778877776654
No 287
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=87.84 E-value=18 Score=31.73 Aligned_cols=181 Identities=19% Similarity=0.193 Sum_probs=102.3
Q ss_pred CchHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-------chhhHHHHhcCChHHHHHHhccch---hhHHHHHHHHHHHH
Q 015687 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-------PKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSN 226 (402)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-------~~~~~~~~~~g~i~~L~~~l~~~~---~~~~~~~a~~~L~~ 226 (402)
|+-+.+.+-+.+ +...+.++..|..++... ++.|-.+.-.+.+|.++..+.+.. .......++..|+.
T Consensus 64 Glq~Ll~KGL~S--s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~ 141 (262)
T PF14225_consen 64 GLQPLLLKGLRS--SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQ 141 (262)
T ss_pred hHHHHHhCccCC--CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence 333444444443 334556677777766321 112333333345666666663333 12455677788888
Q ss_pred hhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHH
Q 015687 227 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306 (402)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~ 306 (402)
+|........ ..++....+-=..+..+....++..|..-.. ++ . +..++..+..+|.+.-+.++..++.+
T Consensus 142 ~a~~~~~~~L---a~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~-~-----~~~~l~~Ll~lL~n~~~w~~~~~L~i 211 (262)
T PF14225_consen 142 VAEAQGLPNL---ARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PD-H-----EFQILTFLLGLLENGPPWLRRKTLQI 211 (262)
T ss_pred HHHhCCCccH---HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-ch-h-----HHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 8865432221 1222222222123345556666666654221 11 1 12346778999988888999999999
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 307 l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
|..+....+-... ...+++.++.++++++ .-.+|.-+|-++..
T Consensus 212 L~~ll~~~d~~~~--~~~dlispllrlL~t~----~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 212 LKVLLPHVDMRSP--HGADLISPLLRLLQTD----LWMEALEVLDEIVT 254 (262)
T ss_pred HHHHhccccCCCC--cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence 9999876553322 5556888999999876 34456666655543
No 288
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=87.67 E-value=2 Score=37.93 Aligned_cols=133 Identities=17% Similarity=0.133 Sum_probs=75.5
Q ss_pred hhhHHHHHHHHHHHHhhhCCCCCchhhh--h-chHHHHHHhccCC---ChhHHHHHHHHHHHhccCChHHH-HHHHHhCc
Q 015687 212 AKLSMLRNATWTLSNFCRGKPQPLFEQT--R-PALPALERLIHSN---DDEVLTDACWALSYLSDGTNDKI-QAVIEAGV 284 (402)
Q Consensus 212 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~-~~l~~L~~lL~~~---~~~v~~~a~~~l~~l~~~~~~~~-~~~~~~~~ 284 (402)
..+..+--++.+++|+..+.+....... . .++..+..+..+. +..++..+...+.|++....... ..-....+
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 4566777889999999987544332222 2 2333343333333 78899999999998863211000 00011123
Q ss_pred HHHHHHhcC-C-CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHH
Q 015687 285 CPRLVELLR-H-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 344 (402)
Q Consensus 285 i~~L~~~L~-~-~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~ 344 (402)
+..+.+.+. . .+++....++-++|+++...+.........|+-..+...-....++.++.
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~ 263 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKE 263 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHH
Confidence 556666432 2 57889999999999999877654443333344444444443332444443
No 289
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=87.61 E-value=18 Score=31.41 Aligned_cols=117 Identities=26% Similarity=0.347 Sum_probs=65.9
Q ss_pred hchHHHHHHhccCCChh--------HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC--ChhhHHHHHHHHHH
Q 015687 240 RPALPALERLIHSNDDE--------VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGN 309 (402)
Q Consensus 240 ~~~l~~L~~lL~~~~~~--------v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~--~~~v~~~a~~~l~n 309 (402)
..++|.++++++.++.. +.+..-.++..++. |=++.|..++.++ +..+|..|+.++..
T Consensus 72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~------------G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD------------GDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC------------CCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 47789999999665431 22233333444443 3455666666555 46789999999999
Q ss_pred hhcCChHHHHHHHhCCChHHHHHH-hcCCCchhHHHHHHHHHHHHhcC----CHHHHHHHHHcCCHHHHH
Q 015687 310 IVTGDDMQTQCIINHQALPCLLDL-LTQNYKKSIKKEACWTISNITAG----NVNQIQAIIEAGIIGPLV 374 (402)
Q Consensus 310 l~~~~~~~~~~i~~~~~l~~L~~l-l~~~~~~~v~~~a~~~L~nl~~~----~~~~~~~l~~~~~i~~L~ 374 (402)
++...+..+..+++. +..++.. +... ++. .-.+.+++++.- --..++.+.+.|+++.-+
T Consensus 140 l~~~~~~~Re~vi~~--f~~ll~~~l~~~--~~~--~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~~~ 203 (249)
T PF06685_consen 140 LVHEGPISREEVIQY--FRELLNYFLERN--PSF--LWGSLVADICDLYPEELLPEIRKAFEDGLVDPSF 203 (249)
T ss_pred HHHcCCCCHHHHHHH--HHHHHHHHhccC--chH--HHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCccc
Confidence 999888777766642 3333332 3332 222 112233444442 233455556677765533
No 290
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=87.57 E-value=3.1 Score=32.24 Aligned_cols=75 Identities=15% Similarity=0.095 Sum_probs=58.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCC--CCHHHHHHHHHHHHHhhcC
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD--DFPQLQFEAAWALTNIASG 145 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~~~~~~a~~~L~~l~~~ 145 (402)
+++..+.+.|+++++..+..|+..|-.++..-..+....+....++..|++++... .++.++..++..+...+..
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999999987654223344555668888899999763 3378999999988877653
No 291
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=87.51 E-value=13 Score=30.08 Aligned_cols=116 Identities=15% Similarity=0.175 Sum_probs=71.6
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhC--CchHHHHHhhCC-CCHHHHHHHHHHHHHhh---CCC
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH--GAVPIFVRLLSS-PTDDVREQAVWALGNVA---GDS 188 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~---~~~ 188 (402)
.+..+..+|++.+ +.-+-.++..+..++..++ .+.+.+. .-+..++.+|+. +...+.+.++.+|..|. .+.
T Consensus 26 l~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 26 LVTRINSLLQSKS-AYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4667788888887 7778888888877776432 2344333 357788888886 45667888888888876 344
Q ss_pred chhhHHHHhcCChHHHHHHhccc-hhhHHHHHHHHHHHHhhhCCCCC
Q 015687 189 PKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQP 234 (402)
Q Consensus 189 ~~~~~~~~~~g~i~~L~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~ 234 (402)
|+....+... .++.++..+.+- .+......++.+|..+....|..
T Consensus 103 p~l~Rei~tp-~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 103 PTLTREIATP-NLPKFIQSLLQLLQDSSCPETALDALATLLPHHPTT 148 (165)
T ss_pred CchHHHHhhc-cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCcc
Confidence 4443333322 234433333111 11566677777787777765443
No 292
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=87.41 E-value=2.4 Score=33.11 Aligned_cols=74 Identities=12% Similarity=0.023 Sum_probs=58.1
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcC-----CCCHHHHHHHHHHHHHhhc
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR-----DDFPQLQFEAAWALTNIAS 144 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~~~~~~a~~~L~~l~~ 144 (402)
+++..+.+.|++.++..+..|+..|-.++..-.......+...+++..|++++.. ..++.++..++..+..-+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4678888999999999999999999988764333445667788899999999963 1237899988888877664
No 293
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=86.92 E-value=61 Score=36.83 Aligned_cols=266 Identities=12% Similarity=0.106 Sum_probs=143.5
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCcc---hHHHHhCCchHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCC
Q 015687 125 RDDFPQLQFEAAWALTNIASGTSEN---TRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 200 (402)
Q Consensus 125 ~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~ 200 (402)
+.+ ..+...|+..|..++..--+. ...-.+...+.+|..++. +.+.++++..+.++.++..... ..+ .. +
T Consensus 1148 ~~n-~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~nI-kS-G 1221 (1780)
T PLN03076 1148 SEN-LSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---NNV-KS-G 1221 (1780)
T ss_pred Ccc-hhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---hhh-hc-C
Confidence 334 678888888888777532211 111122346677777665 4788999999999999874322 122 22 5
Q ss_pred hHHHHHHhc---cchhhHHHHHHHHHHHHhhhCC-CCC---chhhhhchHHHHHHhccCC-ChhHHHHHHHHHHHhc---
Q 015687 201 LMPLLAQFN---EHAKLSMLRNATWTLSNFCRGK-PQP---LFEQTRPALPALERLIHSN-DDEVLTDACWALSYLS--- 269 (402)
Q Consensus 201 i~~L~~~l~---~~~~~~~~~~a~~~L~~l~~~~-~~~---~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~l~~l~--- 269 (402)
...+..++. ...++.+...+..++..++.+. +.. .......++..+..+.... +.++--.++..|.+++
T Consensus 1222 WktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076 1222 WKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred cHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence 556666553 3456778888888888777653 211 1233345555555555333 4555555555555331
Q ss_pred -cCCh-----------------------HHH-----HHHHHhCcHHHHHHh---cCCCChhhHHHHHHHHHHhhcC----
Q 015687 270 -DGTN-----------------------DKI-----QAVIEAGVCPRLVEL---LRHPSPSVLIPALRTVGNIVTG---- 313 (402)
Q Consensus 270 -~~~~-----------------------~~~-----~~~~~~~~i~~L~~~---L~~~~~~v~~~a~~~l~nl~~~---- 313 (402)
.+.. ... ........++.|..+ ..++..+||..|+.+|-.+...
T Consensus 1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence 1100 000 000011233333333 4567789999999988777632
Q ss_pred -ChHHHHHHHhCCChHHHHHHhcCCC----------------------chhHHHHHHHHHHHHhc---CCHHHHHHHHHc
Q 015687 314 -DDMQTQCIINHQALPCLLDLLTQNY----------------------KKSIKKEACWTISNITA---GNVNQIQAIIEA 367 (402)
Q Consensus 314 -~~~~~~~i~~~~~l~~L~~ll~~~~----------------------~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~ 367 (402)
+++....++. +++-++...+.+.. +..+...+..+|.+++. .--+.+..+++
T Consensus 1382 Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~- 1459 (1780)
T PLN03076 1382 FSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK- 1459 (1780)
T ss_pred CCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 2233444444 45555555443210 00123333344444443 22333333333
Q ss_pred CCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 368 GIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 368 ~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
+++..|...+..++..+...++.+|.+++..
T Consensus 1460 ~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ 1490 (1780)
T PLN03076 1460 KVLMLLVSFIKRPHQSLAGIGIAAFVRLMSN 1490 (1780)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 3566666666668888888888888887653
No 294
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=86.54 E-value=13 Score=28.86 Aligned_cols=74 Identities=16% Similarity=0.111 Sum_probs=58.7
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchhhHHHHhcCChHHHHHHhccchhhH-HHHHHHHHHHHhhhCC
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLS-MLRNATWTLSNFCRGK 231 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~~l~~~~~~~-~~~~a~~~L~~l~~~~ 231 (402)
++..|.+-|.++++.++..|+..|-.+..+ ++.++..+...++++.|..++....+.. ++..++..+.......
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 566677777889999999999999999877 4557788888889999999986555444 8888888887777654
No 295
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=86.26 E-value=8.7 Score=31.46 Aligned_cols=76 Identities=17% Similarity=0.184 Sum_probs=53.7
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcC-CCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 015687 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASG-TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191 (402)
Q Consensus 114 g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 191 (402)
..+|.|.+=|...+ ...+..|...+..+... ..+..-.++ ..+|.++...|++.++++...++.+|..|+..++..
T Consensus 38 ~~Lpif~dGL~Et~-~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 38 HYLPIFFDGLRETE-HPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hHHHHHHhhhhccC-ccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 35788888887777 56677777777777654 222222222 256777888889999999999999999996555433
No 296
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=86.06 E-value=5.5 Score=31.36 Aligned_cols=74 Identities=12% Similarity=0.112 Sum_probs=61.5
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
++..|..=|.+.++.++..|+..|-.+..++. .++..+...+++..|+.++....+..++..+...+...+...
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 56777777788899999999999999987654 477788888899999999966578899999998888887765
No 297
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=85.82 E-value=27 Score=31.61 Aligned_cols=155 Identities=12% Similarity=0.043 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHhCC-----------chHHHHHhhC------CCCHHHHHHHHHHHHHhhCCCchh
Q 015687 129 PQLQFEAAWALTNIASGTSENTRVVIDHG-----------AVPIFVRLLS------SPTDDVREQAVWALGNVAGDSPKC 191 (402)
Q Consensus 129 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g-----------~i~~L~~lL~------~~~~~v~~~a~~~L~nl~~~~~~~ 191 (402)
-++|..|+.|+.....++++.+..+++.- ....|+..|- +.|+--...|+.+|.++..+++..
T Consensus 52 f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~~ 131 (312)
T PF04869_consen 52 FDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPEA 131 (312)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHHH
Confidence 57889999999999988888777766521 1112333222 223333445666666666666655
Q ss_pred hHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhc----c-CCChhHHHHHHHHHH
Q 015687 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI----H-SNDDEVLTDACWALS 266 (402)
Q Consensus 192 ~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL----~-~~~~~v~~~a~~~l~ 266 (402)
++.+..- .......... ....++.+..+| . +.|+.+...-+..|+
T Consensus 132 Ke~al~V--------------------------~~~~~~~ge~----~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~ 181 (312)
T PF04869_consen 132 KEQALRV--------------------------TEGDESSGEE----PVTLIQTVSELLIASLRRNSDPRIQIGYLMLLI 181 (312)
T ss_dssp HHHHTT----------------------------EE--STTS------EEHHHHHHHHTTT----T--HHHHHHHHHHHH
T ss_pred HHHHHcc--------------------------cCCCCCCCCC----cccHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Confidence 4444331 0000000111 122334444433 2 446777777778887
Q ss_pred HhccCChHHHHHHHHh-CcHHHHHHhcC---CCChhhHHHHHHHHHHhhcC
Q 015687 267 YLSDGTNDKIQAVIEA-GVCPRLVELLR---HPSPSVLIPALRTVGNIVTG 313 (402)
Q Consensus 267 ~l~~~~~~~~~~~~~~-~~i~~L~~~L~---~~~~~v~~~a~~~l~nl~~~ 313 (402)
....+++..+..+++. ..++.|+.... +.+..++--+...||-+...
T Consensus 182 ~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef 232 (312)
T PF04869_consen 182 VWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEF 232 (312)
T ss_dssp HHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHh
Confidence 7777777777777776 47888888753 33456777777778877653
No 298
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=85.65 E-value=9.5 Score=33.97 Aligned_cols=136 Identities=15% Similarity=0.164 Sum_probs=73.1
Q ss_pred ChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCch--hhhhc----hHHHHHHhcc--------CCChhHHHHHHHHH
Q 015687 200 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF--EQTRP----ALPALERLIH--------SNDDEVLTDACWAL 265 (402)
Q Consensus 200 ~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~----~l~~L~~lL~--------~~~~~v~~~a~~~l 265 (402)
++|+++.++ ++.++.++..++.+|..+....+.... ....| +.+.+.+++. .+...+...+.-++
T Consensus 120 iiP~iL~ll-DD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLL-DDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHh-cCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 688999999 777999999999999999987654440 11122 2334445554 33456777777777
Q ss_pred HHhcc-----CCh---HHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC
Q 015687 266 SYLSD-----GTN---DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN 337 (402)
Q Consensus 266 ~~l~~-----~~~---~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~ 337 (402)
..++. ... .....++..|++..+...-+...+.++...+..+..++..-....-.-++ .+++.+.+.+.++
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~-rii~~l~~~l~np 277 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQ-RIIPVLSQILENP 277 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHhcCC
Confidence 77632 111 11222233333332222222223566666666666665431111111111 4566666666554
No 299
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.36 E-value=42 Score=33.43 Aligned_cols=291 Identities=11% Similarity=0.105 Sum_probs=144.2
Q ss_pred ccHHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 71 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 71 ~~i~~l~~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
..++.+.+.|. +.|+..+..|-..|+.+. .+ ++ .+....-++..++.+--+..|..+|..+.++.. .
T Consensus 5 aqLe~lCk~LY~s~D~~~R~~AE~~L~e~s-~s-pe---------clskCqlll~~gs~pYs~mlAst~L~Klvs~~t-~ 72 (1082)
T KOG1410|consen 5 AQLESLCKDLYESTDPTARHRAEKALAELS-ES-PE---------CLSKCQLLLERGSYPYSQMLASTCLMKLVSRKT-P 72 (1082)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHc-cC-HH---------HHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-C
Confidence 34567776665 689999999999999883 22 12 233444445555546667788888888777533 1
Q ss_pred hHHHHhCCchHHHHHhhCCCCHH----HHHHHHHHHHHhhCCCch--hhHHHHhcCChHHHHHHhccchhhHHHHHHHHH
Q 015687 150 TRVVIDHGAVPIFVRLLSSPTDD----VREQAVWALGNVAGDSPK--CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWT 223 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~~~----v~~~a~~~L~nl~~~~~~--~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~ 223 (402)
........+-.+++.++....|+ +....+..++.+.+-... .++...-...+..+.+.+ +..+.+--..+...
T Consensus 73 lpl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl-~~~~ve~~~igv~i 151 (1082)
T KOG1410|consen 73 LPLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFL-QMDNVEHCIIGVQI 151 (1082)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHh-ccCchHHHHHHHHH
Confidence 11122223455666666654433 333444445555432111 111111222455556666 33333333334444
Q ss_pred HHHhhhCC-------CCCchh---------hhhchHHHHHHhccCC------C---hhHHHHHHHHHHHhc---------
Q 015687 224 LSNFCRGK-------PQPLFE---------QTRPALPALERLIHSN------D---DEVLTDACWALSYLS--------- 269 (402)
Q Consensus 224 L~~l~~~~-------~~~~~~---------~~~~~l~~L~~lL~~~------~---~~v~~~a~~~l~~l~--------- 269 (402)
|..|...- |..... ....++..-..+|+.. | ..+...++..-.++.
T Consensus 152 LsqLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~ 231 (1082)
T KOG1410|consen 152 LSQLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSST 231 (1082)
T ss_pred HHHHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhcccccccccc
Confidence 44444321 110000 0111222222222211 1 122233332222211
Q ss_pred c----------CChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcC------ChHHHHHHHhCCChHHHHHH
Q 015687 270 D----------GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG------DDMQTQCIINHQALPCLLDL 333 (402)
Q Consensus 270 ~----------~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~------~~~~~~~i~~~~~l~~L~~l 333 (402)
+ -+......+.+...++...++..+-.+..-..++.++..+++- +++. ...+. .++.-...+
T Consensus 232 DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeR-a~yl~-~Lv~Gvk~i 309 (1082)
T KOG1410|consen 232 DESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAER-AKYLQ-HLVEGVKRI 309 (1082)
T ss_pred ccccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHH-HHHHH-HHHHHHHHH
Confidence 1 1122333455667788888888888888888899999888752 2222 22222 344445556
Q ss_pred hcCC---CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhc
Q 015687 334 LTQN---YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 378 (402)
Q Consensus 334 l~~~---~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 378 (402)
+.++ .++.--.+-|..|+.+-. ..+...++.....|.+++++.
T Consensus 310 l~np~~LsD~~nyHeFCRllaRlkt--NYQL~ELv~v~~Y~e~irLiA 355 (1082)
T KOG1410|consen 310 LENPQGLSDPANYHEFCRLLARLKT--NYQLGELVKVECYPEVIRLIA 355 (1082)
T ss_pred HhCCcCCCCcchHHHHHHHHHHHHh--hhhhHhhhccCCcHHHHHHHH
Confidence 6554 245555666777666543 244555555555555555553
No 300
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=85.07 E-value=4.1 Score=41.70 Aligned_cols=130 Identities=13% Similarity=0.116 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhc
Q 015687 171 DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 250 (402)
Q Consensus 171 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL 250 (402)
+.++.++.-+|+++|-...... ...+|.+++-|..+....++.+..-++..+|... .......+|.+...|
T Consensus 945 ~~vra~~vvTlakmcLah~~La-----Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLA-----KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAASL 1015 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHHh
Confidence 5688899999999986544322 2268899999988888889999998888888662 234467899999999
Q ss_pred cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 015687 251 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 313 (402)
Q Consensus 251 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~ 313 (402)
.++++-|+..++-.|++|....-.+.. -.++-+++--|-+.+++++..|=++++.+...
T Consensus 1016 ~Dp~~iVRrqt~ilL~rLLq~~~vKw~----G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFGIVKWN----GELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred cCchHHHHHHHHHHHHHHHhhhhhhcc----hhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 999999999999999998854321111 11233334444456777888888888877653
No 301
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=84.84 E-value=28 Score=40.26 Aligned_cols=212 Identities=13% Similarity=0.079 Sum_probs=124.6
Q ss_pred HHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCC----Cch--hhhhchHHHHH
Q 015687 174 REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ----PLF--EQTRPALPALE 247 (402)
Q Consensus 174 ~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~----~~~--~~~~~~l~~L~ 247 (402)
...|.++++++-...... .-.+..++.-.....+.+++.++..+++.+....+. .+. ..+...+..+.
T Consensus 461 ~~~a~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll 534 (2341)
T KOG0891|consen 461 IQLAFKTLGGFKFSGYSL------TLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALL 534 (2341)
T ss_pred HHHHHHHHhhhhhhhhhH------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHH
Confidence 556888888875432211 113344344333667888888887666666555322 111 11333344433
Q ss_pred Hhc-cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCC
Q 015687 248 RLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQA 326 (402)
Q Consensus 248 ~lL-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~ 326 (402)
.+- .+.++.++......+. ......+...+.+..+...+....-.++..+...+|+++..++.+.-.-+....
T Consensus 535 ~~aia~~~~~i~~~v~~~l~------~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~ 608 (2341)
T KOG0891|consen 535 TVAIADTDPDIRIRVLSSLN------ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTL 608 (2341)
T ss_pred HHhccCCCcchhhhHHhhhc------cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHH
Confidence 332 3456776666555443 222234555566666777778888889999999999999988855544444444
Q ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 327 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 327 l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
+..+-.+-.+. -..++..+..-+..+..+.+..+...++. .+..++..+.+.+..+.+.+..++..|+..|
T Consensus 609 l~~~s~l~~sg-~~r~~~~~a~~~~~~i~~~~~~i~~~v~~-~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~ 679 (2341)
T KOG0891|consen 609 LELLTELEFSG-MARTKEESAKLLCELIISSPVLISPYVGP-ILLVLLPKLQDPSSGVEKAVLETIGELCAVG 679 (2341)
T ss_pred HHHhchhhhcc-hHHhHHHHHHHhhHHHHHHHHHHHhhcCc-hHHHHHHHHhccchhhHHHHHHHHHHHHHhc
Confidence 44444444444 34444444444444444455555555544 4566777778888888888888888887654
No 302
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=84.48 E-value=13 Score=29.14 Aligned_cols=74 Identities=15% Similarity=0.112 Sum_probs=58.1
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhhHHHHhcCChHHHHHHhccchhhH---HHHHHHHHHHHhhhCC
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLS---MLRNATWTLSNFCRGK 231 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~~l~~~~~~~---~~~~a~~~L~~l~~~~ 231 (402)
++..|.+-|.+.++.++..|+.+|-.+..++ +.++..+....++..|..++....... ++..+...+.......
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 5677777888899999999999999998775 567778877788899999885444333 8888888877777665
No 303
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=83.87 E-value=17 Score=27.65 Aligned_cols=93 Identities=16% Similarity=0.101 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHH-cCCHHHHHHHh
Q 015687 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIE-AGIIGPLVNLL 377 (402)
Q Consensus 300 ~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~-~~~i~~L~~ll 377 (402)
--..+.-|.+++..+......+ .+.|.+-|++. ++.|+..+..+|-++|. |+++....+.. ..+|..+.+.-
T Consensus 18 pgy~~~Eia~~t~~s~~~~~ei-----~d~L~kRL~~~-~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~ 91 (122)
T cd03572 18 PGYLYEEIAKLTRKSVGSCQEL-----LEYLLKRLKRS-SPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYK 91 (122)
T ss_pred chHHHHHHHHHHHcCHHHHHHH-----HHHHHHHhcCC-CCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcC
Confidence 3345556667776665555534 45788999988 89999999999999997 67777666664 33444444443
Q ss_pred ccCC--------HHHHHHHHHHHHHhhcC
Q 015687 378 LNAE--------FEIKKEAAWAISNATSG 398 (402)
Q Consensus 378 ~~~~--------~~v~~~a~~aL~nl~~~ 398 (402)
...| ..||.+|-.++.-|...
T Consensus 92 g~~Dp~~Gd~~~~~VR~~A~El~~~if~~ 120 (122)
T cd03572 92 GPPDPLKGDSLNEKVREEAQELIKAIFSY 120 (122)
T ss_pred CCCCcccCcchhHHHHHHHHHHHHHHhcc
Confidence 3122 36888888887766543
No 304
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=83.50 E-value=24 Score=36.34 Aligned_cols=143 Identities=17% Similarity=0.186 Sum_probs=90.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHH
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 153 (402)
..+...+.++++......+.++..+...+.-++.. ...-++.-..-.+..- ..+......+|..++...++....+
T Consensus 444 ~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~-~~~~~~~~~il~rls~~~~~~L~~l 519 (727)
T PF12726_consen 444 KALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSL-GQITDLISQILERLSDFDPSHLKEL 519 (727)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 45566666777777777777777775554222222 1111111122222211 4566777889999998877777666
Q ss_pred Hh-CCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 154 ID-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 154 ~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
.. .++...++.++-+++.++.+.|...|....... .|.. .+-.++ +..-........+.+..+....
T Consensus 520 ~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~--~R~e--------~i~~ll-~~~~~~tL~ai~~~l~~~~~~~ 587 (727)
T PF12726_consen 520 LSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD--GRLE--------AIQALL-QSNFSPTLSAINWSLRQLTKLK 587 (727)
T ss_pred HcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC--cHHH--------HHHHHH-HHhHHHHHHHHHHHHHHHHhhh
Confidence 65 688999999999999999999999999987532 2222 223333 3334455677777887777664
No 305
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.79 E-value=61 Score=33.26 Aligned_cols=252 Identities=13% Similarity=0.119 Sum_probs=146.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
...+=++++++....+-.++..+-++.... +.+ .++.+ .+=.|.+....++ ..++...+++...- ..+...
T Consensus 26 ~~~ldkGlr~~~t~eqpeavvr~~RLFek~-Pfp--ifiNs-~llrLaDaF~~Gn-~llRf~V~rv~~q~----g~hln~ 96 (970)
T KOG1988|consen 26 LMELDKGLRSGKTSEQPEAVVRFPRLFEKY-PFP--IFINS-QLLRLADAFPVGN-NLLRFAVLRVDQQS----GKHLNK 96 (970)
T ss_pred HHHHhhcccccccccchHHHHHHHHHHhhC-Cch--hhhhH-HHHHHHHHhccCc-HHHHHHHHHHHhhc----cccchh
Confidence 345556788777777778887777775432 222 34333 2345666667777 67888777777632 222233
Q ss_pred HHh-CCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 153 VID-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 153 ~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
+.. ...+........+.|+.-+..++..+|.+..--| +..-...++..=..+.+.--.+.++.+....+...
T Consensus 97 v~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lip-------Efn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~s 169 (970)
T KOG1988|consen 97 VLNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIP-------EFNQVHHLIRISLDSHHELEVEAAEFAAACFAAQS 169 (970)
T ss_pred hhhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcc-------cccchhHHHHHHhcCccchhhHHHHHHHhhhhhhh
Confidence 332 2344455555667899999999999998864444 33445556655334444445566677766666542
Q ss_pred CCCchhhhhchHHHHHHhccCCC--hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-CCChhhHHHHHHHHH
Q 015687 232 PQPLFEQTRPALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVG 308 (402)
Q Consensus 232 ~~~~~~~~~~~l~~L~~lL~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~-~~~~~v~~~a~~~l~ 308 (402)
. ....++...+..++...+ +...-..+.+++.+..... ....+......++. .+..+....-+.++.
T Consensus 170 k----~FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at------~A~ra~~l~m~lv~~tps~d~~v~fL~stT 239 (970)
T KOG1988|consen 170 K----DFACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHAT------GASRAFGLCMSLVSGTPSIDRVVAFLYSTT 239 (970)
T ss_pred h----hhHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhh------hhHHHHHHHHHHhcCCCcccceeeehhhhH
Confidence 1 111233334445554443 3445566677777764322 11223445555553 334445556677777
Q ss_pred HhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 309 nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
+++...-.. -.+-++.+.+.++.+....++..+.|.+.+++.
T Consensus 240 ~Lasrs~~a-----i~eq~d~l~q~~ked~~kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 240 NLASRSLVA-----ISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK 281 (970)
T ss_pred HHHHHHHHH-----hHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence 777533221 224566788888866466778888888888875
No 306
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=82.19 E-value=39 Score=31.42 Aligned_cols=154 Identities=16% Similarity=0.084 Sum_probs=90.9
Q ss_pred HHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhcc----------CCChhHHHHHHHHHHHhccCC
Q 015687 203 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----------SNDDEVLTDACWALSYLSDGT 272 (402)
Q Consensus 203 ~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~----------~~~~~v~~~a~~~l~~l~~~~ 272 (402)
.++..|.+......+..++.++.-|+++...-.-....+.+..|+.+-. ..|..+...++.+|+|+..++
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S 128 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS 128 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence 4455553333344455666667777776533333333444444444321 135678999999999999998
Q ss_pred hHHHHHHHHhCcHHHHHHhcCCC-----ChhhHHHHHHHHHHhhc-CChHHHHHHHhCCChHHHHHHhcCCC--------
Q 015687 273 NDKIQAVIEAGVCPRLVELLRHP-----SPSVLIPALRTVGNIVT-GDDMQTQCIINHQALPCLLDLLTQNY-------- 338 (402)
Q Consensus 273 ~~~~~~~~~~~~i~~L~~~L~~~-----~~~v~~~a~~~l~nl~~-~~~~~~~~i~~~~~l~~L~~ll~~~~-------- 338 (402)
....+...+......+.+.+... -..+...=++.|--+.. ..+...+.+.+.++++.+-+++.+..
T Consensus 129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~ 208 (532)
T KOG4464|consen 129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINV 208 (532)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCC
Confidence 88877788887777777765211 11122222222222222 22445556678899999999996541
Q ss_pred ------chhHHHHHHHHHHHHhcC
Q 015687 339 ------KKSIKKEACWTISNITAG 356 (402)
Q Consensus 339 ------~~~v~~~a~~~L~nl~~~ 356 (402)
+-..-.++..++.|++.+
T Consensus 209 ~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 209 PPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred CCCCHHHHHHHHHHHHHHhheeec
Confidence 113446778888888863
No 307
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.08 E-value=57 Score=34.47 Aligned_cols=254 Identities=13% Similarity=0.143 Sum_probs=140.9
Q ss_pred HHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC----
Q 015687 93 TQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS---- 168 (402)
Q Consensus 93 ~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~---- 168 (402)
.+|..++... ..+.+.+.+..++..++.++-+ ++-+...++++..+....+.+.. ..-+-.++..|++
T Consensus 664 DcLisllKnn-teNqklFreanGvklilpflin---dehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt 735 (2799)
T KOG1788|consen 664 DCLISLLKNN-TENQKLFREANGVKLILPFLIN---DEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVT 735 (2799)
T ss_pred HHHHHHHhcc-chhhHHHHhhcCceEEEEeeec---hHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhccee
Confidence 4455555443 6667777787778777777743 34466666666666554454322 1224445555554
Q ss_pred ----CC----HHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc---------chhh----HHHHHHHHHHH-H
Q 015687 169 ----PT----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE---------HAKL----SMLRNATWTLS-N 226 (402)
Q Consensus 169 ----~~----~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~---------~~~~----~~~~~a~~~L~-~ 226 (402)
++ ..+....+.+++.+.+-+...+..+-+.|++..|+..|.. ..|. ++.......+. .
T Consensus 736 ~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTla 815 (2799)
T KOG1788|consen 736 RISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLA 815 (2799)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHH
Confidence 12 2234445566777776666677888888888888776621 1121 11111111111 1
Q ss_pred hhhCCCCCchhh---hh----------c---------hHHHHH----HhccCCChhHHHHHHHHHHHhcc----------
Q 015687 227 FCRGKPQPLFEQ---TR----------P---------ALPALE----RLIHSNDDEVLTDACWALSYLSD---------- 270 (402)
Q Consensus 227 l~~~~~~~~~~~---~~----------~---------~l~~L~----~lL~~~~~~v~~~a~~~l~~l~~---------- 270 (402)
.|.+..+..... .. + .+..+. +.+-+++-.--..||..+..+-+
T Consensus 816 vcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsG 895 (2799)
T KOG1788|consen 816 VCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSG 895 (2799)
T ss_pred HhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCC
Confidence 222221111100 00 1 111111 11122222222334444433321
Q ss_pred CChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhc---CCCchhHHHHHH
Q 015687 271 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT---QNYKKSIKKEAC 347 (402)
Q Consensus 271 ~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~---~~~~~~v~~~a~ 347 (402)
......+.+...|++..++..+-...++.+..-++.+..++..++......-..|.++.|+.++. ++ +......+.
T Consensus 896 qfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsg-sspfLshal 974 (2799)
T KOG1788|consen 896 QFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSG-SSPFLSHAL 974 (2799)
T ss_pred CcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcC-CchHhhccH
Confidence 11123456788999999999988888999999999999999998877776777788888887763 23 334555666
Q ss_pred HHHHHHhc
Q 015687 348 WTISNITA 355 (402)
Q Consensus 348 ~~L~nl~~ 355 (402)
.++..+++
T Consensus 975 kIvemLga 982 (2799)
T KOG1788|consen 975 KIVEMLGA 982 (2799)
T ss_pred HHHHHHhh
Confidence 66666665
No 308
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=82.03 E-value=57 Score=32.41 Aligned_cols=160 Identities=18% Similarity=0.164 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHH---hCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHH
Q 015687 129 PQLQFEAAWALTNIASGTSENTRVVI---DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 205 (402)
Q Consensus 129 ~~~~~~a~~~L~~l~~~~~~~~~~~~---~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~ 205 (402)
.+++.-|+.+|+-+..+.+-+....- .+..+..++..+. .++..+-.++++|.|+..+ +..+..+... ...++
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~ 633 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESIL 633 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHh
Confidence 57888888888887775443332222 1234455555554 4567777899999999888 4456665543 33333
Q ss_pred HHhc---cchhhHHHHHHHHHHHHhhhCC--CCCchhhhhchHHHHHHhccC-CChhHHHHHHHHHHHhccCChHHHHHH
Q 015687 206 AQFN---EHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAV 279 (402)
Q Consensus 206 ~~l~---~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~ 279 (402)
..+. ..++..++....-...|++-.- ...+......+...+..++.. +|-+.....+-+|++|+..+...++ +
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~-~ 712 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQ-L 712 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHH-H
Confidence 3331 2233344444333333333221 122222222222333333332 2445566777888888877655444 4
Q ss_pred HHhCcHHHHHHhcC
Q 015687 280 IEAGVCPRLVELLR 293 (402)
Q Consensus 280 ~~~~~i~~L~~~L~ 293 (402)
...--++.++..+.
T Consensus 713 A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 713 AKNRSVDSIAKKLK 726 (745)
T ss_pred HHhcCHHHHHHHHH
Confidence 33334566666553
No 309
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=81.08 E-value=29 Score=28.47 Aligned_cols=73 Identities=10% Similarity=0.081 Sum_probs=53.9
Q ss_pred cHHHHHHhcCCCChhhHHHHHHHHHHhhcC-ChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH
Q 015687 284 VCPRLVELLRHPSPSVLIPALRTVGNIVTG-DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358 (402)
Q Consensus 284 ~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~-~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 358 (402)
.++.+++-|...+...+--|...+..+... ..+.+-.++ ..++..|...|++. ++++...+..+|..|+..++
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTR-DPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhh
Confidence 567777777777777777777777777765 333333333 37788888999999 99999999999999965433
No 310
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=80.79 E-value=45 Score=32.58 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 169 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 169 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
.+...|..+..+||.|+...|.. ..-+.+.+..|..-| ..++++++.++-.+|+.+....
T Consensus 386 ~~~~lR~~aYe~lG~L~~~~p~l--~~~d~~li~~LF~sL-~~~~~evr~sIqeALssl~~af 445 (501)
T PF13001_consen 386 EDIELRSLAYETLGLLAKRAPSL--FSKDLSLIEFLFDSL-EDESPEVRVSIQEALSSLAPAF 445 (501)
T ss_pred ccHHHHHHHHHHHHHHHccCccc--ccccHHHHHHHHHHh-hCcchHHHHHHHHHHHHHHHHH
Confidence 57889999999999999887753 112345778888888 7778889999888998888775
No 311
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=79.91 E-value=45 Score=33.86 Aligned_cols=91 Identities=15% Similarity=0.182 Sum_probs=65.1
Q ss_pred cHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 015687 284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA 363 (402)
Q Consensus 284 ~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 363 (402)
++..|-.++. .+..|..++..|+.++...+.....+.+..+++.|++.|..+.+..+...|+.+|..|.=.-+.....
T Consensus 71 ~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~ 148 (668)
T PF04388_consen 71 LFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGP 148 (668)
T ss_pred HHHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhH
Confidence 3444445454 34578999999999999888888889999999999999987767778888888888877554443333
Q ss_pred HHHcCCHHHHHHHh
Q 015687 364 IIEAGIIGPLVNLL 377 (402)
Q Consensus 364 l~~~~~i~~L~~ll 377 (402)
.+. .++....+++
T Consensus 149 ~L~-~Lf~If~Rl~ 161 (668)
T PF04388_consen 149 HLP-DLFNIFGRLL 161 (668)
T ss_pred HHH-HHHHHHHHHH
Confidence 222 1444444444
No 312
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=79.37 E-value=3.1 Score=32.62 Aligned_cols=74 Identities=16% Similarity=0.114 Sum_probs=55.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHH---HHHHHHHHHHHhhc
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ---LQFEAAWALTNIAS 144 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~---~~~~a~~~L~~l~~ 144 (402)
+++..+.+.|++.++..+..|+..|-.++..-.......+....++..|.+++.+..... ++..++..|...+.
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 467788889999999999999999998876542344456667788999999887654333 78888877766554
No 313
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=79.08 E-value=22 Score=25.85 Aligned_cols=68 Identities=13% Similarity=0.182 Sum_probs=51.9
Q ss_pred hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHH
Q 015687 112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWAL 181 (402)
Q Consensus 112 ~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L 181 (402)
..+++..|++..+.++ ...+..++..+..++.. +.....+.+-|+...|.++-..-++..+...-..+
T Consensus 28 ~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4556778888888877 56788999999998885 77888888999999988877666666665544443
No 314
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=78.45 E-value=64 Score=30.83 Aligned_cols=214 Identities=10% Similarity=0.064 Sum_probs=104.3
Q ss_pred CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC----CCchhhhhchHH
Q 015687 169 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP----QPLFEQTRPALP 244 (402)
Q Consensus 169 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~----~~~~~~~~~~l~ 244 (402)
+|+-+-....+++..+-.+-......++.. .+..+....++..++..-.....+++.+.+... .........++|
T Consensus 42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P 120 (435)
T PF03378_consen 42 ENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP 120 (435)
T ss_dssp C-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 466666667777666554443333443332 233333333344577777777777777766532 222245577889
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHH-hcCCCCh---hhHHHHHHHHHHhhcCChHHHH
Q 015687 245 ALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVE-LLRHPSP---SVLIPALRTVGNIVTGDDMQTQ 319 (402)
Q Consensus 245 ~L~~lL~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~-~L~~~~~---~v~~~a~~~l~nl~~~~~~~~~ 319 (402)
.+..+|+.+-.+....+...++.+.+... .... .....|.. ++...-| .-.-+..+.|.++....+...
T Consensus 121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p-----~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i- 194 (435)
T PF03378_consen 121 PFQEILQQDVQEFIPYVFQILAQLLELRPSSPLP-----DAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFI- 194 (435)
T ss_dssp HHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S-------TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-----HHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhh-
Confidence 99999998888888888888888875433 1111 11122222 2221111 112344556666554433222
Q ss_pred HHHhC----CChHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHH
Q 015687 320 CIINH----QALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAIS 393 (402)
Q Consensus 320 ~i~~~----~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~ 393 (402)
... +++..+-+++.+. .. -.++...|..+... ..+.....+.. ++..|+.-|++ ..++..+.-+..++
T Consensus 195 --~~~~~l~~iLgvFQkLi~sk-~~--D~~gF~LL~~iv~~~p~~~l~~yl~~-I~~lll~RLq~skT~kf~~~fv~F~~ 268 (435)
T PF03378_consen 195 --VANNQLEPILGVFQKLIASK-AN--DHYGFDLLESIVENLPPEALEPYLKQ-IFTLLLTRLQSSKTEKFVKRFVVFLS 268 (435)
T ss_dssp -----S-CHHHHHHHHHHHT-T-TC--HHHHHHHHHHHHHHS-HHHHGGGHHH-HHHHHHHHHHHC--HHHHHHHHHHHH
T ss_pred --cchhhHHHHHHHHHHHHCCC-Cc--chHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHhhCCcHHHHHHHHHHHH
Confidence 211 3344455666665 22 24566666666653 33334444433 55555555553 44555555444444
Q ss_pred Hh
Q 015687 394 NA 395 (402)
Q Consensus 394 nl 395 (402)
.+
T Consensus 269 ~~ 270 (435)
T PF03378_consen 269 LF 270 (435)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 315
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.28 E-value=79 Score=34.44 Aligned_cols=225 Identities=16% Similarity=0.115 Sum_probs=123.7
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhc---c---chhhHHHHHHHHHHHHhhhCC-CCCchhhh
Q 015687 167 SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---E---HAKLSMLRNATWTLSNFCRGK-PQPLFEQT 239 (402)
Q Consensus 167 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~---~---~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~ 239 (402)
..+..+++...+.++.++.....+ .++ +| -+.+.+++. . .....+.+.+..+|.-++.+. +..+...+
T Consensus 852 s~~~~evr~~sl~~l~silet~ge---~ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci 926 (1610)
T KOG1848|consen 852 SSRGVEVRISSLEALVSILETVGE---HLL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCI 926 (1610)
T ss_pred cCccceeeHHHHHHHHHHHhccch---hhc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHH
Confidence 446677888888888888754432 111 12 344444432 1 124567788888888888887 77777777
Q ss_pred hchHHHHHHhc-cCCChhHHHHHHHHHHHhccCC---------hHHH-------------HHHHHhCcHH----HHHHhc
Q 015687 240 RPALPALERLI-HSNDDEVLTDACWALSYLSDGT---------NDKI-------------QAVIEAGVCP----RLVELL 292 (402)
Q Consensus 240 ~~~l~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~---------~~~~-------------~~~~~~~~i~----~L~~~L 292 (402)
.++++.++.+- +..|..+--.|+..+..+++.- +... +.+.-.++.- .|.++-
T Consensus 927 ~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~ 1006 (1610)
T KOG1848|consen 927 LDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLC 1006 (1610)
T ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHh
Confidence 88888877766 3456666555555554444311 1000 0011111111 122222
Q ss_pred CCCChhhHHHHHHHHHHhhcCC-hHHHHHHHhCCChHHHHHHhcCCC--------chhH----HHHHHHHHHHHhcCCHH
Q 015687 293 RHPSPSVLIPALRTVGNIVTGD-DMQTQCIINHQALPCLLDLLTQNY--------KKSI----KKEACWTISNITAGNVN 359 (402)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~~-~~~~~~i~~~~~l~~L~~ll~~~~--------~~~v----~~~a~~~L~nl~~~~~~ 359 (402)
.++-..||..|++++-.+.... ........+.=+...++.+|.+.. ..++ -+..+.+|+-|+.--++
T Consensus 1007 ~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e 1086 (1610)
T KOG1848|consen 1007 EDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSE 1086 (1610)
T ss_pred ccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHH
Confidence 3445677777777776665321 111111222223445666665210 1223 24577888888876677
Q ss_pred HHHHHHHc-CC-------HHHHHHHhccCCHHHHHHHHHHHHHhh
Q 015687 360 QIQAIIEA-GI-------IGPLVNLLLNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 360 ~~~~l~~~-~~-------i~~L~~ll~~~~~~v~~~a~~aL~nl~ 396 (402)
+...+... |+ +..|-.+..+.++++...|..++..+.
T Consensus 1087 ~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1087 NFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 77777653 32 344444445678889888888776543
No 316
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=75.99 E-value=5.2 Score=21.50 Aligned_cols=18 Identities=17% Similarity=0.543 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHhcCCHHH
Q 015687 341 SIKKEACWTISNITAGNVNQ 360 (402)
Q Consensus 341 ~v~~~a~~~L~nl~~~~~~~ 360 (402)
.+|.+|+++|+++ ++++.
T Consensus 2 ~vR~~aa~aLg~~--~~~~a 19 (30)
T smart00567 2 LVRHEAAFALGQL--GDEEA 19 (30)
T ss_pred HHHHHHHHHHHHc--CCHhH
Confidence 5799999999998 44553
No 317
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=75.78 E-value=5.2 Score=41.02 Aligned_cols=92 Identities=14% Similarity=0.234 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh
Q 015687 298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 377 (402)
Q Consensus 298 ~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 377 (402)
.++..+.-+++++|-..+...+ ..+|.|++-|.......+|.+.+.+++.+|.+- ..+++. .+|.+...|
T Consensus 946 ~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~-YiP~I~~~L 1015 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDR-YIPMIAASL 1015 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHH-hhHHHHHHh
Confidence 3677788888888876554333 567888887776645677777777777777531 123333 677888888
Q ss_pred ccCCHHHHHHHHHHHHHhhcCC
Q 015687 378 LNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 378 ~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
.++++-||+.+...|.+|...|
T Consensus 1016 ~Dp~~iVRrqt~ilL~rLLq~~ 1037 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFG 1037 (1529)
T ss_pred cCchHHHHHHHHHHHHHHHhhh
Confidence 8888888888888888876543
No 318
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=75.66 E-value=28 Score=25.28 Aligned_cols=69 Identities=17% Similarity=0.148 Sum_probs=52.8
Q ss_pred hCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHH
Q 015687 323 NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 393 (402)
Q Consensus 323 ~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 393 (402)
...++..|+...+.+ +...+.++.-.+..+..+ +...+.+.+-|....|-++-...++..+...-..+.
T Consensus 28 ~~~Ll~~LleWFnf~-~~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFP-PVPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILD 96 (98)
T ss_pred HHHHHHHHHHHhCCC-CCccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 446778888999888 777888888899998775 555778888999998888777777777766555443
No 319
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=74.98 E-value=3.6 Score=30.30 Aligned_cols=43 Identities=28% Similarity=0.318 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHH
Q 015687 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175 (402)
Q Consensus 132 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~ 175 (402)
....+..+..++.. |+.-..+++.|+++.|+.+|.++|.+|..
T Consensus 63 Ld~~Ik~l~~La~~-P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLATA-PELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHccCC-hhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 45567778888875 78888899999999999999999887753
No 320
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=74.59 E-value=21 Score=27.81 Aligned_cols=125 Identities=18% Similarity=0.245 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhhhCC-CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccC------C---hHHHHHH----HH
Q 015687 216 MLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG------T---NDKIQAV----IE 281 (402)
Q Consensus 216 ~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~------~---~~~~~~~----~~ 281 (402)
++...+.+++.++... |.. -..+++.++..+.++ +.-....+..|..+... . ..+...+ .+
T Consensus 4 i~~kl~~~l~~i~~~~~P~~----Wp~~l~~l~~~~~~~-~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQ----WPDFLEDLLQLLQSS-PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTT----STTHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhh----CchHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH
Confidence 4556667777776654 321 134566666666553 44444444444443311 0 1111111 11
Q ss_pred h--CcHHHHHHhcCCCC----hhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHH
Q 015687 282 A--GVCPRLVELLRHPS----PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 350 (402)
Q Consensus 282 ~--~~i~~L~~~L~~~~----~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L 350 (402)
. .+++.+...+.... ..+...++.+++..+..-+ ...+.+.++++.+.+++.+ +.++..|+-+|
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~---~~~~~~A~~cl 148 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQS---PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTS---CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCC---HHHHHHHHHhC
Confidence 1 33444444443322 7788999999999988444 4557777899999999954 45687777664
No 321
>PLN03205 ATR interacting protein; Provisional
Probab=74.50 E-value=64 Score=29.95 Aligned_cols=160 Identities=19% Similarity=0.243 Sum_probs=92.3
Q ss_pred hchHHHHHHhccCCChhHHHHHHHHHHHhcc---CChHHHHHHHHhCcHHHHHHhc-----CCCChhhHHHHHHHHHHhh
Q 015687 240 RPALPALERLIHSNDDEVLTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELL-----RHPSPSVLIPALRTVGNIV 311 (402)
Q Consensus 240 ~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~~L-----~~~~~~v~~~a~~~l~nl~ 311 (402)
..+++.|+.+-.-++..+...+++.|..+.. ++..+.+.-.+.+.+. |.+++ .+..+.++..|+.++.-+.
T Consensus 322 qtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvs-LfElm~QiAv~~TEE~VrLEAvSIMnVIl 400 (652)
T PLN03205 322 KSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHS-LFELMNQIASIRTEEDVKLEALSIMNIIV 400 (652)
T ss_pred HHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHH-HHHHHHHHHhccchhheeeehhhhhHHhh
Confidence 4455566666666666666666666655432 2222223333333322 22222 4567788889988888777
Q ss_pred cCChHHH--HHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-----------H------------
Q 015687 312 TGDDMQT--QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII-----------E------------ 366 (402)
Q Consensus 312 ~~~~~~~--~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-----------~------------ 366 (402)
..++.++ ..+....+++.+.++|+......|+++|...|.-+.. +|.-...+. +
T Consensus 401 mssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN-CpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~ 479 (652)
T PLN03205 401 MSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN-CPKLYDRFDSLHEEKNSSDTENDSEGNFFALEA 479 (652)
T ss_pred hccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc-CcHHHHHHhcCCccccccccccccccccccHHH
Confidence 6655433 3344456778888888766466888888765543321 122111111 0
Q ss_pred -cCCHHHHHHHhcc-----CCHHHHHHHHHHHHHhhcCCCC
Q 015687 367 -AGIIGPLVNLLLN-----AEFEIKKEAAWAISNATSGGSS 401 (402)
Q Consensus 367 -~~~i~~L~~ll~~-----~~~~v~~~a~~aL~nl~~~~~~ 401 (402)
..++.-|.+.+.. .+-++++.|+..|.-+++.|..
T Consensus 480 fSsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk~ 520 (652)
T PLN03205 480 FGKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGNS 520 (652)
T ss_pred HHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCC
Confidence 0134455555543 4568899999999999998863
No 322
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=74.30 E-value=26 Score=28.35 Aligned_cols=108 Identities=15% Similarity=0.136 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHhccC-----CCC---chhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHH-hC
Q 015687 86 NIQLDATTQFRKLLSIE-----RSP---PINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI-DH 156 (402)
Q Consensus 86 ~~~~~a~~~l~~l~s~~-----~~~---~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~ 156 (402)
..+..++..+..++... +.+ ....++...+.+.+.+.+.+++ ..+-..+++++..+... .+..+. +.
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~~---~~~~Lk~el 112 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLSR---FRSHLKLEL 112 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 44455556555554432 122 4555667778899999888877 88888999999998853 222222 11
Q ss_pred C-chHHHHH-hhCCCC--HHHHHHHHHHHHHhhCCCchhhHHHHh
Q 015687 157 G-AVPIFVR-LLSSPT--DDVREQAVWALGNVAGDSPKCRDLVLS 197 (402)
Q Consensus 157 g-~i~~L~~-lL~~~~--~~v~~~a~~~L~nl~~~~~~~~~~~~~ 197 (402)
+ .++.++. ++++++ ..-++.++.++..++.++.-..+....
T Consensus 113 e~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~lf~N 157 (168)
T PF12783_consen 113 EVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDLFVN 157 (168)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 2 3344444 566543 468888999999999877655554443
No 323
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=73.94 E-value=28 Score=35.78 Aligned_cols=166 Identities=14% Similarity=0.141 Sum_probs=97.7
Q ss_pred CchhHHhhcCcHHHHHHhhcCCC-C------HHHHHHHHHHHHHhhcCCCcchHHHHhC--------CchHHHHHhhCC-
Q 015687 105 PPINEVIQSGVVPRFIEFLSRDD-F------PQLQFEAAWALTNIASGTSENTRVVIDH--------GAVPIFVRLLSS- 168 (402)
Q Consensus 105 ~~~~~~~~~g~i~~L~~lL~~~~-~------~~~~~~a~~~L~~l~~~~~~~~~~~~~~--------g~i~~L~~lL~~- 168 (402)
++...+...+.+..++++..-+. | .++...|+.+|.-+..- |..+..+... .+|..++..-.-
T Consensus 592 ~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~ 670 (1516)
T KOG1832|consen 592 PAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGS 670 (1516)
T ss_pred hHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeeccccc
Confidence 44556777778888888876432 1 35666777777766654 4444443321 245544443321
Q ss_pred ---CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCCh--HHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchH
Q 015687 169 ---PTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL--MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPAL 243 (402)
Q Consensus 169 ---~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i--~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l 243 (402)
.+++++..|+.+|-|.....|.+|...+..=+- ..=-..+...+......+...-.++-.+. ..++
T Consensus 671 ~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~---------ndGI 741 (1516)
T KOG1832|consen 671 NSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRG---------NDGI 741 (1516)
T ss_pred ccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhc---------CccH
Confidence 489999999999999988887766544321000 00000111222333444555445555544 4567
Q ss_pred HHHHHhccCCC-----hhHHHHHHHHHHHhccCChHHHHHHHH
Q 015687 244 PALERLIHSND-----DEVLTDACWALSYLSDGTNDKIQAVIE 281 (402)
Q Consensus 244 ~~L~~lL~~~~-----~~v~~~a~~~l~~l~~~~~~~~~~~~~ 281 (402)
.+|+++|+... ..++.-||.+|.-|+..+.. .+.+.+
T Consensus 742 kiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tV-rQIltK 783 (1516)
T KOG1832|consen 742 KILLKLLQYKNPPTTADCIRALACRVLLGLARDDTV-RQILTK 783 (1516)
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHH-HHHHHh
Confidence 88888887543 45888899999999876653 354443
No 324
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=73.34 E-value=79 Score=31.49 Aligned_cols=143 Identities=11% Similarity=0.090 Sum_probs=74.5
Q ss_pred ccCCChhHHHHHHHHHHHhccCChHHHHHHHH----hCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhC-
Q 015687 250 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIE----AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH- 324 (402)
Q Consensus 250 L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~----~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~- 324 (402)
+..-..+..-.|+-+|..+..+.... ..+.. ..++..++..+. .++.-+..++|+|.|+..+ +...+.+...
T Consensus 553 l~~wp~~~~fPalDilRl~v~h~~~~-s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~~ 629 (745)
T KOG0301|consen 553 LLQWPVEMMFPALDILRLAVKHHSSN-SLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSRL 629 (745)
T ss_pred HhcCCHHHhhhHHHHHHHHHhccchh-hhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHHH
Confidence 33445666677777777766554322 11222 235556666665 5667788999999999887 4344433321
Q ss_pred -CChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-----CCHHHHHHHHHHHHHhhcC
Q 015687 325 -QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-----AEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 325 -~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-----~~~~v~~~a~~aL~nl~~~ 398 (402)
.++..+...-..+ +..++...+-...|++.. .++.--+.+..+.|...+.. +|.+....++.||++++..
T Consensus 630 ~~i~~~~~~~~s~~-~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~ 705 (745)
T KOG0301|consen 630 ESILDPVIEASSLS-NKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV 705 (745)
T ss_pred HHHhhhhhhhhccc-chhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc
Confidence 2222233222222 445555444444454421 01111113444444444432 3444566778888888876
Q ss_pred C
Q 015687 399 G 399 (402)
Q Consensus 399 ~ 399 (402)
+
T Consensus 706 ~ 706 (745)
T KOG0301|consen 706 D 706 (745)
T ss_pred c
Confidence 5
No 325
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.82 E-value=1.8e+02 Score=33.17 Aligned_cols=214 Identities=16% Similarity=0.075 Sum_probs=109.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhhHH
Q 015687 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDL 194 (402)
Q Consensus 116 i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (402)
...++..|...+ +..+..+..+++.++..-++ ..++. +..+.++.-+.+ .++..|..-.-++|.+-.+....-..
T Consensus 878 ~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~--~~f~a-~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 878 LTLIVNSLINPN-PKLRCAAAEALARLAQVVGS--APFVA-SLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHhhhhccCC-hHHHHHHHHHHHHHHHhccc--cchHH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 344445555555 67777777777777653221 11111 234455554444 55555655556666665433222222
Q ss_pred HHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCC---hhHHHHHH---------
Q 015687 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND---DEVLTDAC--------- 262 (402)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~---~~v~~~a~--------- 262 (402)
-.....+..++.+..++.++.++..+..++..+...........+...+..+..+|.+.. .++...--
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence 122224556666665566779999999999988876533334455566666666664321 22221111
Q ss_pred ----HHHHHhccCCh--HHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC
Q 015687 263 ----WALSYLSDGTN--DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 336 (402)
Q Consensus 263 ----~~l~~l~~~~~--~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~ 336 (402)
.+++.=...+. +.+. .+..-.+-...-++.++++-++..+..++.++-...+.+.. -.-+++.+..++.+
T Consensus 1034 ~alittlgpeL~~N~~~d~t~-~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTS-TLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSS 1109 (2067)
T ss_pred HHHHHhcccccCCCCcccchh-HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcc
Confidence 11111111111 1111 12222233334445677888888999999888766553221 11345556666655
Q ss_pred C
Q 015687 337 N 337 (402)
Q Consensus 337 ~ 337 (402)
+
T Consensus 1110 ~ 1110 (2067)
T KOG1822|consen 1110 S 1110 (2067)
T ss_pred h
Confidence 4
No 326
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=72.82 E-value=70 Score=31.25 Aligned_cols=213 Identities=15% Similarity=0.082 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhc--C--------CCCHHHHHHHHHHHHHh--hcCCCcchHH
Q 015687 85 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS--R--------DDFPQLQFEAAWALTNI--ASGTSENTRV 152 (402)
Q Consensus 85 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~--~--------~~~~~~~~~a~~~L~~l--~~~~~~~~~~ 152 (402)
.++...|-..|.++... +-+..++..|..+.. . +-.+.+|...+..|+.- |.....
T Consensus 251 ~~V~~~ae~~LKr~~~~--------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~~~---- 318 (501)
T PF13001_consen 251 SSVSDRAEDLLKRLSVS--------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATSFP---- 318 (501)
T ss_pred chHHHHHHHHHhhcCCC--------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhCCc----
Confidence 44444455555554211 234456777777766 2 11367787777777652 221122
Q ss_pred HHhCCchHHHHHhhCCC--CHHHHHHHHHHH---HHhhCCCchhhHH----HHhcCChHHHHHHh----ccchhhHHHHH
Q 015687 153 VIDHGAVPIFVRLLSSP--TDDVREQAVWAL---GNVAGDSPKCRDL----VLSNGALMPLLAQF----NEHAKLSMLRN 219 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L---~nl~~~~~~~~~~----~~~~g~i~~L~~~l----~~~~~~~~~~~ 219 (402)
.++..+..-+.+. +..++..++..+ .......+...-. .+..++.+.+ ..- ....+...+..
T Consensus 319 ----~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~-~~~~~~~~~~~~~~lR~~ 393 (501)
T PF13001_consen 319 ----NILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLI-QDSSSQSNSSEDIELRSL 393 (501)
T ss_pred ----cHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCcccc-ccccccCCCcccHHHHHH
Confidence 2333333344444 667777777777 5555443321111 1122233222 100 12346788999
Q ss_pred HHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHH--HHHHhCcHH-HHHHhcCCCC
Q 015687 220 ATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ--AVIEAGVCP-RLVELLRHPS 296 (402)
Q Consensus 220 a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~--~~~~~~~i~-~L~~~L~~~~ 296 (402)
+..+|..|+...|..- ......+..|..-|..++++++..+-.+|+.++..-..... ......... .+.....+..
T Consensus 394 aYe~lG~L~~~~p~l~-~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~ 472 (501)
T PF13001_consen 394 AYETLGLLAKRAPSLF-SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEV 472 (501)
T ss_pred HHHHHHHHHccCcccc-cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchh
Confidence 9999999998865432 12245666777777888899988888888887642211100 000000111 1112223344
Q ss_pred hhhHHHHHHHHHHhhcCCh
Q 015687 297 PSVLIPALRTVGNIVTGDD 315 (402)
Q Consensus 297 ~~v~~~a~~~l~nl~~~~~ 315 (402)
..+|..|++....+-..++
T Consensus 473 ~~~R~~avk~an~~fpf~d 491 (501)
T PF13001_consen 473 RSCRYAAVKYANACFPFSD 491 (501)
T ss_pred HHHHHHHHHHHHHhCCccc
Confidence 5667777776666555444
No 327
>KOG3132 consensus m3G-cap-specific nuclear import receptor (Snurportin1) [RNA processing and modification]
Probab=72.51 E-value=2.9 Score=35.27 Aligned_cols=46 Identities=26% Similarity=0.401 Sum_probs=37.0
Q ss_pred cHHHhhhccCCCCchHHhhhhHHHHHHHHHHhhhHHHHhhhhcccc
Q 015687 9 TEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQ 54 (402)
Q Consensus 9 ~~~~~~~~k~~~~~~~~r~~r~~~~~~lRk~~r~~~~~~kr~~~~~ 54 (402)
..+|..+||+-.+..|.|.||.+...++.|.+|-+...+-|+....
T Consensus 23 ~hpR~sQykn~~s~aeQ~arrr~~llelQks~r~D~~~~~r~lA~d 68 (325)
T KOG3132|consen 23 SHPRQSQYKNLTSDAEQRARRRASLLELQKSSRPDVDPEIRSLAVD 68 (325)
T ss_pred cCchhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCccHHHHhhccc
Confidence 3489999999555567777777779999999999999999987543
No 328
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=72.50 E-value=90 Score=33.73 Aligned_cols=176 Identities=13% Similarity=0.114 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC
Q 015687 214 LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR 293 (402)
Q Consensus 214 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~ 293 (402)
..+++.++|+|..+..+-. .......+..+..++..+.-+++...+..+.+....-.+....+. ..+++..++.|.
T Consensus 143 apVre~caq~L~~~l~~~~---~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~-~~vl~~~i~~L~ 218 (1549)
T KOG0392|consen 143 APVREACAQALGAYLKHMD---ESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLL-NLVLDFVIEGLE 218 (1549)
T ss_pred hhhHHHHHHHHHHHHHhhh---hHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhh
Confidence 4788899999998887632 223355667777777777777777666666554432112222111 246778888888
Q ss_pred CCChhhHHHHHHHHHHhhcCChH---HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-----
Q 015687 294 HPSPSVLIPALRTVGNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII----- 365 (402)
Q Consensus 294 ~~~~~v~~~a~~~l~nl~~~~~~---~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~----- 365 (402)
+.+..++..|...+.-++..-.. +.-..+.+.+...+..+..-+ +. .......+..++... +...+.
T Consensus 219 ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~--~s-~~si~~ll~~l~~~~--evl~l~~~~n~ 293 (1549)
T KOG0392|consen 219 DSDDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLS--SS-TASIMHLLDELCIEN--EVLDLFEQQNL 293 (1549)
T ss_pred hcchHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcc--hh-hHHHHHHHHHHhhhH--HHHHHHHHhhh
Confidence 88888998888887766654311 111111112222222222211 10 111112223333321 122221
Q ss_pred HcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 366 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 366 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
+.|++|.+.-.+.+.=..++..++..+..+.+.
T Consensus 294 ~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~ 326 (1549)
T KOG0392|consen 294 EVGLVPRLWPFLRHTISSVRRAALETLAMLLEA 326 (1549)
T ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 257888888888877777888888777766553
No 329
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=71.69 E-value=66 Score=33.19 Aligned_cols=127 Identities=13% Similarity=0.080 Sum_probs=85.9
Q ss_pred hchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 015687 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 319 (402)
Q Consensus 240 ~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~ 319 (402)
..+-..+...+.+++.......+.++..++.-..-.... ...-.+.-....+..-..+.....++|+.++...++...
T Consensus 440 ~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~ 517 (727)
T PF12726_consen 440 PNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLK 517 (727)
T ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 455566677777788888888888888876422110000 111112222222222345677889999999998888877
Q ss_pred HHHh-CCChHHHHHHhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCC
Q 015687 320 CIIN-HQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAIIEAGI 369 (402)
Q Consensus 320 ~i~~-~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~ 369 (402)
.++. .+....++.++-++ ++++...|.-.|..+.. +..+.++.+++...
T Consensus 518 ~l~~d~~~~~~i~s~lfsp-~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~~ 569 (727)
T PF12726_consen 518 ELLSDPDAAQAIWSLLFSP-DDDLYQAAQDLLKQAFDVDGRLEAIQALLQSNF 569 (727)
T ss_pred HHHcCcchhhHHHhheeCC-ChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhH
Confidence 7775 57888899999888 88999999999998885 56677777776543
No 330
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=71.47 E-value=7.2 Score=28.75 Aligned_cols=44 Identities=27% Similarity=0.445 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHH
Q 015687 258 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP 302 (402)
Q Consensus 258 ~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~ 302 (402)
....+..+..++..+ +....+++.|+++.|+.+|.|++.++...
T Consensus 63 Ld~~Ik~l~~La~~P-~LYp~lv~l~~v~sL~~LL~HeN~DIai~ 106 (108)
T PF08216_consen 63 LDEEIKKLSVLATAP-ELYPELVELGAVPSLLGLLSHENTDIAID 106 (108)
T ss_pred HHHHHHHHHHccCCh-hHHHHHHHcCCHHHHHHHHCCCCcceehc
Confidence 455677778888766 56788999999999999999998776543
No 331
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.33 E-value=57 Score=30.27 Aligned_cols=114 Identities=15% Similarity=0.126 Sum_probs=80.6
Q ss_pred hHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHH
Q 015687 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCI 321 (402)
Q Consensus 242 ~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i 321 (402)
.+.-++..+.+.+.+++.+++..+-.+....+.... .--..+++.+.++..+.+..+|......+-.+...........
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 355677778999999999999988777655333322 2223567888888888888999999888888665433222222
Q ss_pred HhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCC
Q 015687 322 INHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357 (402)
Q Consensus 322 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~ 357 (402)
.-.=+.+++...+.+. .+.++..+...+.-+....
T Consensus 138 ~~~l~~~yi~~AMThi-t~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHI-TPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred hHHHHHHHHHHHHhhc-cHHHHHhhHHHHHHHHHHc
Confidence 2223466777777787 8999999999999888643
No 332
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=71.17 E-value=66 Score=27.56 Aligned_cols=130 Identities=12% Similarity=0.134 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC---------C---------hhhHHHHHHHHHHhhcCChH
Q 015687 255 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP---------S---------PSVLIPALRTVGNIVTGDDM 316 (402)
Q Consensus 255 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~---------~---------~~v~~~a~~~l~nl~~~~~~ 316 (402)
......+|..+..|...++ ....+.+.++++.+.+.|... + ......=...||.++. ++.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~e-G~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~-~~~ 155 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPE-GIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSS-TPN 155 (226)
T ss_pred hHHHHHHHHHHHHHHcCcH-HHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhC-Chh
Confidence 5556677777777776644 345666788888888877422 1 1122334566788865 555
Q ss_pred HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 015687 317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 317 ~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 396 (402)
..+.+-+.+++..+..+...+..+.+ ...++.++=.+.+.+...++ -..|.+++..+|..|..-|..+.
T Consensus 156 Gl~lLe~~~if~~l~~i~~~~~~~~l---~klil~~LDY~~~~~~R~iL--------sKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 156 GLKLLERWNIFTMLYHIFSLSSRDDL---LKLILSSLDYSVDGHPRIIL--------SKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHHCCHHHHHHHHHccCchHHH---HHHHHhhCCCCCccHHHHHH--------HHHHhcCCHHHHHHHHHHHHHHh
Confidence 67777788999999999987623332 22355555444444444443 34788899999999999998775
Q ss_pred c
Q 015687 397 S 397 (402)
Q Consensus 397 ~ 397 (402)
.
T Consensus 225 r 225 (226)
T PF14666_consen 225 R 225 (226)
T ss_pred c
Confidence 3
No 333
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=71.01 E-value=62 Score=27.15 Aligned_cols=141 Identities=17% Similarity=0.144 Sum_probs=88.3
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC-CCHHHHHHH-HHHHHHhhCCCchhhHH
Q 015687 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQA-VWALGNVAGDSPKCRDL 194 (402)
Q Consensus 117 ~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a-~~~L~nl~~~~~~~~~~ 194 (402)
..+..++.++. .+.+..|+.++...... ... ..++.+-.++.. .+-.+.+.. ..+++.+....+
T Consensus 54 ~l~~~L~~~~~-~E~~~la~~il~~~~~~---~~~-----~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~~----- 119 (213)
T PF08713_consen 54 ELADELWESGY-REERYLALLILDKRRKK---LTE-----EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKHP----- 119 (213)
T ss_dssp HHHHHHHCSSC-HHHHHHHHHHHHHCGGG-----H-----HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHHG-----
T ss_pred HHHHHHcCCch-HHHHHHHHHHhHHHhhh---hhH-----HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhH-----
Confidence 34455667766 78888888888654421 110 135566666664 566676666 445555532211
Q ss_pred HHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChH
Q 015687 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 274 (402)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~ 274 (402)
...+.+...+ .++++=.++.++-++...... .....++..+...+.+++..|+..+.|+|..++...++
T Consensus 120 ----~~~~~~~~W~-~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 120 ----EALELLEKWA-KSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp ----GHHHHHHHHH-HCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred ----HHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHH
Confidence 1233444444 677777888887666555544 33345666777778888999999999999999988887
Q ss_pred HHHHHHHh
Q 015687 275 KIQAVIEA 282 (402)
Q Consensus 275 ~~~~~~~~ 282 (402)
....++..
T Consensus 189 ~v~~~l~~ 196 (213)
T PF08713_consen 189 EVLEFLQK 196 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666554
No 334
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=70.86 E-value=10 Score=26.80 Aligned_cols=71 Identities=8% Similarity=0.095 Sum_probs=45.4
Q ss_pred HhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHH
Q 015687 196 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALS 266 (402)
Q Consensus 196 ~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~ 266 (402)
.+..++.|+..++....+.+++.....++.++.......-...-..++..+.....++++.+...|..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 34456788888886778999999999999999876431111111233334444445567777777766553
No 335
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=70.66 E-value=33 Score=27.02 Aligned_cols=99 Identities=16% Similarity=0.156 Sum_probs=50.3
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHhc-cCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHH
Q 015687 243 LPALERLIHSNDDEVLTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCI 321 (402)
Q Consensus 243 l~~L~~lL~~~~~~v~~~a~~~l~~l~-~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i 321 (402)
...++.+|..+...-....+..|.+=. .+-++. .-++.+.+..++.-=.....--...|+..||.+..|..
T Consensus 24 t~~lielLk~~~~~~~~~lldLL~~RV~PGVD~A--A~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYN------ 95 (154)
T PF11791_consen 24 TAELIELLKNPPAGEEAFLLDLLTNRVPPGVDEA--AYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYN------ 95 (154)
T ss_dssp HHHHHHHHHS--TT-HHHHHHHHHHSS--TT-HH--HHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTT------
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHhcCCCCCChH--HHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCc------
Confidence 345566665554333334444444433 222221 23344444444433222222345678888888876544
Q ss_pred HhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 322 INHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 322 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
+..|+.+|.++ ++.+...|+-+|.+..-
T Consensus 96 -----V~~LI~~L~~~-d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 96 -----VQPLIDLLKSD-DEELAEEAAEALKNTLL 123 (154)
T ss_dssp -----HHHHHHGG--G--TTTHHHHHHHHHT--T
T ss_pred -----HHHHHHHHcCC-cHHHHHHHHHHHHhhHH
Confidence 66899999888 89999999999997764
No 336
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=70.63 E-value=94 Score=29.09 Aligned_cols=81 Identities=11% Similarity=0.038 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCCchhh-HHHHhcCChH
Q 015687 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDSPKCR-DLVLSNGALM 202 (402)
Q Consensus 129 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~~~~~-~~~~~~g~i~ 202 (402)
..+..+++.||+|+...++..+....+......+++.+.. ....+.-.-++.|.-+..-.+..| +.+.+.++++
T Consensus 111 ~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~ 190 (532)
T KOG4464|consen 111 MHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLE 190 (532)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccH
Confidence 4789999999999999988889988888877777776532 111122222223332322222344 4456678888
Q ss_pred HHHHHhc
Q 015687 203 PLLAQFN 209 (402)
Q Consensus 203 ~L~~~l~ 209 (402)
.+.+.+.
T Consensus 191 ~lt~~le 197 (532)
T KOG4464|consen 191 LLTNWLE 197 (532)
T ss_pred HHHHHhh
Confidence 8888874
No 337
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=70.56 E-value=4.7 Score=21.21 Aligned_cols=14 Identities=14% Similarity=0.404 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhc
Q 015687 342 IKKEACWTISNITA 355 (402)
Q Consensus 342 v~~~a~~~L~nl~~ 355 (402)
||..|+|+|+++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 68899999998854
No 338
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=70.48 E-value=27 Score=27.11 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHH
Q 015687 255 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307 (402)
Q Consensus 255 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l 307 (402)
.++...++.++.......+ ...+...++++.+..+|.++ ..+..|+.+|
T Consensus 100 ~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 7788888888888776544 34567778899999988444 3577777664
No 339
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=68.48 E-value=34 Score=27.03 Aligned_cols=122 Identities=14% Similarity=0.128 Sum_probs=82.5
Q ss_pred CcchHHHHhCCchHHHHHhhCC-CCHHHHHHHHHHHHHhhCC--CchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHH
Q 015687 147 SENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGD--SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWT 223 (402)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~--~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~ 223 (402)
++.-+.+.+...+..+++++.. ....++.+.+.++.-+..+ ++..-..+...+.+..++..--+-.++++.......
T Consensus 16 ~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIsf 95 (149)
T PF09758_consen 16 PSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYISF 95 (149)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHHH
Confidence 4455677788899999998886 6778888888887776533 222334566778888888776566788899999999
Q ss_pred HHHhhhCCCCCchhh--h--hchHH---HHHHhccCCChhHHHHHHHHHHHh
Q 015687 224 LSNFCRGKPQPLFEQ--T--RPALP---ALERLIHSNDDEVLTDACWALSYL 268 (402)
Q Consensus 224 L~~l~~~~~~~~~~~--~--~~~l~---~L~~lL~~~~~~v~~~a~~~l~~l 268 (402)
|..++-.-....... . .+-+| .-+++..++|.-++.++-..+-++
T Consensus 96 LK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 96 LKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 998886642222111 1 23344 445666788888877766655554
No 340
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=68.16 E-value=1.2e+02 Score=29.53 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=49.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCH--HHHHHHHHHHHHhhCCC--chh
Q 015687 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD--DVREQAVWALGNVAGDS--PKC 191 (402)
Q Consensus 116 i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~--~v~~~a~~~L~nl~~~~--~~~ 191 (402)
+-.|.+.+++++ ......|+.-|+..-++ .+.+.+ ...|..++.+.+. ++.-.|..+|+.+.... ...
T Consensus 452 lalLs~yl~s~s-~k~~~aaiLGlg~afsG--t~~eev-----l~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~ 523 (881)
T COG5110 452 LALLSNYLQSSS-SKHVIAAILGLGAAFSG--TQAEEV-----LELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDL 523 (881)
T ss_pred HHHHHHhccCCc-hHHHHHHHhhhHHhhcC--CcHHHH-----HHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchH
Confidence 444555566655 44444444444433332 233332 3344445555554 56666667777764322 111
Q ss_pred hHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 192 ~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
... +++.++..-....+.+..+..+..|..|..+.
T Consensus 524 ts~-----ilqtf~Er~~~e~~tqw~RFlaLgLa~Lf~g~ 558 (881)
T COG5110 524 TSL-----ILQTFVERGKIESETQWFRFLALGLASLFYGR 558 (881)
T ss_pred HHH-----HHHHHHHhhhhhhhhHHHHHHHHHHHHHHccc
Confidence 111 34444444322334555666666666666553
No 341
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.23 E-value=8.5 Score=34.78 Aligned_cols=63 Identities=8% Similarity=0.062 Sum_probs=53.8
Q ss_pred HHHHHHHhhcCCCcchHHHHhCCchHHHHHh--hCCCCHHHHHHHHHHHHHhhCCCchhhHHHHh
Q 015687 135 AAWALTNIASGTSENTRVVIDHGAVPIFVRL--LSSPTDDVREQAVWALGNVAGDSPKCRDLVLS 197 (402)
Q Consensus 135 a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l--L~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 197 (402)
..+.+++++...++..+.+.+.|+++.++.- +++.+|-+++-.+.++.+|..++.++++.+.+
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 5678899999999999999999999988773 45688999999999999999998887666543
No 342
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=67.08 E-value=82 Score=29.01 Aligned_cols=110 Identities=13% Similarity=0.129 Sum_probs=65.9
Q ss_pred ChHHHHHHhccc-----h-hhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccC----------CChhHHHHHHH
Q 015687 200 ALMPLLAQFNEH-----A-KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS----------NDDEVLTDACW 263 (402)
Q Consensus 200 ~i~~L~~~l~~~-----~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~----------~~~~v~~~a~~ 263 (402)
.+|.++..+... . +.......+.++..|..+..-....+...++|.++.++-. +...++..|+.
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 466666666321 1 5667778888888888886555556667888988877722 23468889999
Q ss_pred HHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC-h-hhHHHHHHHHHHh
Q 015687 264 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS-P-SVLIPALRTVGNI 310 (402)
Q Consensus 264 ~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~-~-~v~~~a~~~l~nl 310 (402)
++..++..-..... -+...+...+...|.++. + ....-|+..|+.+
T Consensus 291 ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 291 LLAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99988854322211 123334445555554433 2 2244455555554
No 343
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.20 E-value=2.1e+02 Score=31.55 Aligned_cols=254 Identities=11% Similarity=0.141 Sum_probs=133.1
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHH----HHHHhhcCCCCHHHHHHHHHHHHHhhcCCC
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVP----RFIEFLSRDDFPQLQFEAAWALTNIASGTS 147 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~----~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~ 147 (402)
.+..+++.|...|+..+..|+..|..+....+.+.. .|++| .+.++..+++ ..+|...-.++..+...-.
T Consensus 42 el~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~-----~~il~~w~~i~~kl~~d~~-~~VR~~t~~v~s~l~t~lk 115 (1312)
T KOG0803|consen 42 ELDIIVKKLLKRDETTKIKALQELSELIDTSDTEEL-----KGILPEWLVIYAKLIIDED-RTVRLLTHDVFSKLLTKLK 115 (1312)
T ss_pred HHHHHHHHHhccChHHHHHHHHhHHHhcccccchHH-----hhhHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999764422222 22333 3345556666 8999999999988876422
Q ss_pred cchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhc--CChHHHHHHhc-c--------------
Q 015687 148 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN--GALMPLLAQFN-E-------------- 210 (402)
Q Consensus 148 ~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~--g~i~~L~~~l~-~-------------- 210 (402)
.......+ ..+|.....-.+.+..+...|-..+...... ...+...... .+...+.+.+- .
T Consensus 116 k~lsp~LK-~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~-ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~E 193 (1312)
T KOG0803|consen 116 KKLSPFLK-SLIPPWLGGQFDLDYPVSEAAKASFKDGFAE-EKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSE 193 (1312)
T ss_pred HHhhHHHH-hhhhhhhheecccchHHHHHHHHHHHhhcCh-hhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchH
Confidence 22222222 3455555444556666766666666655431 1122222211 11222222210 0
Q ss_pred ---chhhHHHHHHHHHHHHhhhCC-CCCchh----hhhc--hHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 015687 211 ---HAKLSMLRNATWTLSNFCRGK-PQPLFE----QTRP--ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 280 (402)
Q Consensus 211 ---~~~~~~~~~a~~~L~~l~~~~-~~~~~~----~~~~--~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 280 (402)
.....+...+.-++..+.... +..... .... .-..+-+++.+..+.+..+...++..+++.-.... .-.
T Consensus 194 e~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~-~~~ 272 (1312)
T KOG0803|consen 194 ELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRV-MES 272 (1312)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhc-chh
Confidence 011234444455555444322 222111 1111 22356677888889999999888888886544331 111
Q ss_pred HhCcHHHHHHh-cCCCChhhHHHHHHHHHHhhcC-ChHHHHH--HHhCCChHHHHHHhc
Q 015687 281 EAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTG-DDMQTQC--IINHQALPCLLDLLT 335 (402)
Q Consensus 281 ~~~~i~~L~~~-L~~~~~~v~~~a~~~l~nl~~~-~~~~~~~--i~~~~~l~~L~~ll~ 335 (402)
+...+...+.. ..+.+ .+......++...... .+..... ....|++|.+..++.
T Consensus 273 ~~~~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir 330 (1312)
T KOG0803|consen 273 EKNYLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR 330 (1312)
T ss_pred hhhHhhHHHHccccccc-cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence 22333333333 33333 4444444444422222 2222221 145578888888887
No 344
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=66.20 E-value=24 Score=29.72 Aligned_cols=77 Identities=13% Similarity=0.207 Sum_probs=54.6
Q ss_pred CcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 015687 283 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ 362 (402)
Q Consensus 283 ~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 362 (402)
...+.+...+.++++-++..++.++.......+ .. .++..+...+.++ +..|++...|+|..++..+++...
T Consensus 120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~~--~~-----~~l~~~~~~~~d~-~~~vq~ai~w~L~~~~~~~~~~v~ 191 (213)
T PF08713_consen 120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRKED--FD-----ELLEIIEALLKDE-EYYVQKAIGWALREIGKKDPDEVL 191 (213)
T ss_dssp GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGGCH--HH-----HHHHHHHHCTTGS--HHHHHHHHHHHHHHCTT-HHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhcC--HH-----HHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHhCHHHHH
Confidence 345777888889998888888777655554421 22 2234455566677 889999999999999999899888
Q ss_pred HHHHc
Q 015687 363 AIIEA 367 (402)
Q Consensus 363 ~l~~~ 367 (402)
..++.
T Consensus 192 ~~l~~ 196 (213)
T PF08713_consen 192 EFLQK 196 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77764
No 345
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=64.04 E-value=1.2e+02 Score=27.70 Aligned_cols=160 Identities=10% Similarity=0.009 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHH-hhCC--------CCHHHHHHHHHHHHHhhCCCchhhHHHHhcC
Q 015687 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSS--------PTDDVREQAVWALGNVAGDSPKCRDLVLSNG 199 (402)
Q Consensus 129 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~--------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g 199 (402)
..++.+.+..+.......+ .... +....+|+|+. +|.+ .++++-......+..+-....+.-..+.+ .
T Consensus 41 r~iKkeIL~Li~t~i~~~~-~~~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~ 117 (319)
T PF08767_consen 41 RTIKKEILKLIETFISKAE-DPEE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-A 117 (319)
T ss_dssp HHHHHHHHHHHHHHHHT-S--HHH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHhccC-CHHH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-H
Confidence 3566777777777666433 2233 33356777776 4432 35666655555555554322223344443 3
Q ss_pred ChHHHHHHhccc--hhhHHHHHHHHHHHHhhhCCCC----CchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccC--
Q 015687 200 ALMPLLAQFNEH--AKLSMLRNATWTLSNFCRGKPQ----PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG-- 271 (402)
Q Consensus 200 ~i~~L~~~l~~~--~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~-- 271 (402)
++.+.+.++.++ .-|+.+......+..+....+. -+......++..++..+++.+.++...++.++..+...
T Consensus 118 vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~ 197 (319)
T PF08767_consen 118 VFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVS 197 (319)
T ss_dssp HHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 677777787543 2477888877777777776321 12233356777888888999999999999988877642
Q ss_pred --ChHHHHHHHHhCcHHHHHHh
Q 015687 272 --TNDKIQAVIEAGVCPRLVEL 291 (402)
Q Consensus 272 --~~~~~~~~~~~~~i~~L~~~ 291 (402)
+++....+...-.++.+...
T Consensus 198 ~~~~~~~~~F~~~y~~~il~~i 219 (319)
T PF08767_consen 198 KTNPEFANQFYQQYYLDILQDI 219 (319)
T ss_dssp H-SHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHH
Confidence 34445556655444444444
No 346
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=63.91 E-value=1.2e+02 Score=27.81 Aligned_cols=193 Identities=11% Similarity=0.098 Sum_probs=95.1
Q ss_pred CChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhcc--CChHHH
Q 015687 199 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD--GTNDKI 276 (402)
Q Consensus 199 g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~--~~~~~~ 276 (402)
.++..+..++.+..++..+...+.++..=+... .......++..+.+-+.+..+.+|..-+..++.+.. .+.+..
T Consensus 22 ~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~ 98 (339)
T PF12074_consen 22 KIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL 98 (339)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence 356677777767777777777776665444332 112225677788888888877788877777777654 111111
Q ss_pred HHHHHhCcHHHHHHhc----CCCChhhH----HHHHHHHHHhhcCChHHHHH--H----HhCCChHHHH---HHhcC-CC
Q 015687 277 QAVIEAGVCPRLVELL----RHPSPSVL----IPALRTVGNIVTGDDMQTQC--I----INHQALPCLL---DLLTQ-NY 338 (402)
Q Consensus 277 ~~~~~~~~i~~L~~~L----~~~~~~v~----~~a~~~l~nl~~~~~~~~~~--i----~~~~~l~~L~---~ll~~-~~ 338 (402)
. +. ..+++.|...+ .++-+..+ ..+.-.+. +.......... + +..+-=|.++ ++++. .
T Consensus 99 ~-~~-~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~- 174 (339)
T PF12074_consen 99 K-FA-EPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA- 174 (339)
T ss_pred H-HH-HHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccC-
Confidence 1 22 23567777766 33322211 12222222 21111111110 0 0000001100 22222 1
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccC--CHHHHHHHHHHHHHhhcC
Q 015687 339 KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSG 398 (402)
Q Consensus 339 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~ 398 (402)
+++-....+.++..+..+.++....-.....-..++.++-+. .+++|+.|..++..+...
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~ 236 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYAS 236 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 223333334444444433222211111122456677888777 789999999999887654
No 347
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=63.79 E-value=34 Score=26.79 Aligned_cols=74 Identities=7% Similarity=0.015 Sum_probs=53.6
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHH-HHHhhcCCC--CHHHHHHHHHHHHHhhc
Q 015687 71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPR-FIEFLSRDD--FPQLQFEAAWALTNIAS 144 (402)
Q Consensus 71 ~~i~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~-L~~lL~~~~--~~~~~~~a~~~L~~l~~ 144 (402)
+++..+.+.|++ .++.++..|+..|-.++..-......++...+++.. |++++.... +..++..++..+...+.
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 467778888874 588899999888888876433344566777888987 899986321 25788888888877664
No 348
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=63.69 E-value=1.5e+02 Score=28.91 Aligned_cols=144 Identities=14% Similarity=0.135 Sum_probs=86.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCC-------CHHHHHHHHHHHHHhhcC
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-------FPQLQFEAAWALTNIASG 145 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~-------~~~~~~~a~~~L~~l~~~ 145 (402)
+.++.+.+.++|+..+..|+..|.. ++.++. ++|.|+.++..+- +-.+....+..+..|...
T Consensus 209 y~~It~a~~g~~~~~r~eAL~sL~T------DsGL~~-----LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~N 277 (576)
T KOG2549|consen 209 YKEITEACTGSDEPLRQEALQSLET------DSGLQQ-----LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDN 277 (576)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhhcc------CccHHH-----HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcC
Confidence 5677778888888888888876643 233433 4788888886532 234555566666666654
Q ss_pred CCcchHHHHhCCchHHHHHhhCC----------CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccc-hhh
Q 015687 146 TSENTRVVIDHGAVPIFVRLLSS----------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKL 214 (402)
Q Consensus 146 ~~~~~~~~~~~g~i~~L~~lL~~----------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~-~~~ 214 (402)
+...-.-.=+..+|.++.++-+ ....+|+.|+..+..++.+-...-+. +...++..+.+.+.+. .+.
T Consensus 278 -p~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~ 355 (576)
T KOG2549|consen 278 -PNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPL 355 (576)
T ss_pred -CccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCc
Confidence 3332222223567777776532 34568999999999988664433222 3344566666666443 344
Q ss_pred HHHHHHHHHHHHhhh
Q 015687 215 SMLRNATWTLSNFCR 229 (402)
Q Consensus 215 ~~~~~a~~~L~~l~~ 229 (402)
....-++..|..|..
T Consensus 356 st~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 356 STHYGAIAGLSELGH 370 (576)
T ss_pred hhhhhHHHHHHHhhh
Confidence 455555555555544
No 349
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=63.49 E-value=1.7e+02 Score=29.31 Aligned_cols=58 Identities=16% Similarity=0.304 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 015687 82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144 (402)
Q Consensus 82 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~ 144 (402)
+.++++....+..+..++ .--|.+.+.+.+++..+..-+.+. ++.+..++.||+.++.
T Consensus 204 ~~~~SLi~ATLesllrfl---~wiPl~yIfeTnIieLv~~~f~s~--pd~r~~tl~CLtEi~~ 261 (1053)
T COG5101 204 SRDESLIEATLESLLRFL---EWIPLDYIFETNIIELVLEHFNSM--PDTRVATLSCLTEIVD 261 (1053)
T ss_pred cCChHHHHHHHHHHHHHH---hhCchhHHHHHHHHHHHHHHhccC--CchhHHHHHHHHHHHh
Confidence 568888888888888876 357788888888888887766554 3667888888888775
No 350
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=62.96 E-value=2e+02 Score=30.05 Aligned_cols=182 Identities=18% Similarity=0.185 Sum_probs=89.6
Q ss_pred hhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC-----CCCCchhh--hhchHHHHHHhccCC--ChhHHHHH
Q 015687 191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-----KPQPLFEQ--TRPALPALERLIHSN--DDEVLTDA 261 (402)
Q Consensus 191 ~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~~--~~~~l~~L~~lL~~~--~~~v~~~a 261 (402)
+.+.+.+...++.++.++....++.++.++..+|+.+.+. .|.+-... ....+..|+..+-.+ ........
T Consensus 182 Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~s~lVs~ 261 (838)
T KOG2073|consen 182 VIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGTSLSVLVSG 261 (838)
T ss_pred HHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCcchhhHHHH
Confidence 3445566778999999998777899999999999988887 33322222 245555555444332 22333333
Q ss_pred HHHHHHhccCChHHHHHHHHhC-cHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCC---ChHHHHHHhcCC
Q 015687 262 CWALSYLSDGTNDKIQAVIEAG-VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ---ALPCLLDLLTQN 337 (402)
Q Consensus 262 ~~~l~~l~~~~~~~~~~~~~~~-~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~---~l~~L~~ll~~~ 337 (402)
+..+..+....-.... .. ....+.+-....++.+....+.++..-.. ...+.+.+.. .++.=...+..+
T Consensus 262 i~vlI~ll~~~r~~~~----~~~~~~i~~q~~~~~d~~~~~~~l~~~~p~L~---dF~~lL~~~~~~~~l~tt~g~l~pP 334 (838)
T KOG2073|consen 262 IIVLISLLNPRRDTVE----TNSTTTILSQPPSERDPIVLNELLGAMEPRLG---DFVQLLLEPEKLDLLETTYGELEPP 334 (838)
T ss_pred HHHHHHhcCccccccc----ccceeeeecCCccccCccchHHHHHHHHHHHH---HHHHHhcCCccchhhhhhhhccCCC
Confidence 3333222221111100 00 00111111122234444444444433221 1122122111 222222222222
Q ss_pred CchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccC
Q 015687 338 YKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNA 380 (402)
Q Consensus 338 ~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~ 380 (402)
-...|...|-.++-+.. ++..-.+.+...+++..+++++...
T Consensus 335 -LG~~Rlki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y 377 (838)
T KOG2073|consen 335 -LGFERLKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEY 377 (838)
T ss_pred -cchHHHHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhc
Confidence 23456667777776654 5666667777777777777776553
No 351
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=62.74 E-value=1.3e+02 Score=27.76 Aligned_cols=112 Identities=13% Similarity=0.078 Sum_probs=69.3
Q ss_pred CchHHHHHhhCC------C-CHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc---------chhhHHHHHH
Q 015687 157 GAVPIFVRLLSS------P-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE---------HAKLSMLRNA 220 (402)
Q Consensus 157 g~i~~L~~lL~~------~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~---------~~~~~~~~~a 220 (402)
..+|.|+.++.+ . +..+....+..+..|..+.. ..-...-+..++.++.++-. ..+-.++..+
T Consensus 210 ~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~-l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~A 288 (343)
T cd08050 210 QLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPN-LHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYA 288 (343)
T ss_pred hhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCC-CchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHH
Confidence 367888888754 2 45556666677777765544 22222223367777776621 2346889999
Q ss_pred HHHHHHhhhCCCCCchhhhhchHHHHHHhccCCC--hhHHHHHHHHHHHhc
Q 015687 221 TWTLSNFCRGKPQPLFEQTRPALPALERLIHSND--DEVLTDACWALSYLS 269 (402)
Q Consensus 221 ~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~--~~v~~~a~~~l~~l~ 269 (402)
+.++..+|+............+...+.+.|.++. .....-|+..|..+.
T Consensus 289 A~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 289 ARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 9999999988644443444566667777665543 233566666666654
No 352
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=62.74 E-value=72 Score=24.92 Aligned_cols=94 Identities=10% Similarity=0.010 Sum_probs=64.1
Q ss_pred CCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHH
Q 015687 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN-VNQIQAIIEAGIIG 371 (402)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~ 371 (402)
..+++......|..+..= +.... .++..|.+-|.++ ++.+...|...|-.+...+ +.....+...+++.
T Consensus 15 ~~~dw~~ileicD~In~~----~~~~k-----~a~rai~krl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (139)
T cd03567 15 REEDWEAIQAFCEQINKE----PEGPQ-----LAVRLLAHKIQSP-QEKEALQALTVLEACMKNCGERFHSEVGKFRFLN 84 (139)
T ss_pred CCCCHHHHHHHHHHHHcC----CccHH-----HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHH
Confidence 455666666666666431 11111 2455678888888 8999999988888888743 44445666778898
Q ss_pred HHHHHhcc------CCHHHHHHHHHHHHHhh
Q 015687 372 PLVNLLLN------AEFEIKKEAAWAISNAT 396 (402)
Q Consensus 372 ~L~~ll~~------~~~~v~~~a~~aL~nl~ 396 (402)
.|+.++.. .+..|+..++..+..-+
T Consensus 85 el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 85 ELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 99999953 46789988887776543
No 353
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=61.22 E-value=69 Score=28.52 Aligned_cols=131 Identities=16% Similarity=0.095 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC------CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChH
Q 015687 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM 202 (402)
Q Consensus 129 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~ 202 (402)
.+.+..|+.+|.+=.. . +..+|+++.++.. .+.+.....+...+.+..+...+-+--+ +..+|
T Consensus 212 ~~~r~aAl~sLr~dsG----l------hQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~-hqlmP 280 (450)
T COG5095 212 EQTRDAALESLRNDSG----L------HQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYL-HQLMP 280 (450)
T ss_pred HHHHHHHHHHhccCcc----H------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHH-HHHHH
Confidence 5666666666654221 0 1357888888764 3444444444444444444322222211 12455
Q ss_pred HHHHHhc-----c----chhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccC-C-ChhHHHHHHHHHHHhcc
Q 015687 203 PLLAQFN-----E----HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-N-DDEVLTDACWALSYLSD 270 (402)
Q Consensus 203 ~L~~~l~-----~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~-~-~~~v~~~a~~~l~~l~~ 270 (402)
.++.++. . +..-.++..|+..+...+...+..-...-..+...+.+.+-+ . .......|+..++-+..
T Consensus 281 SilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~k 359 (450)
T COG5095 281 SILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILSK 359 (450)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhch
Confidence 5555542 1 223357888888888888776544333334445555544422 2 23456667777766653
No 354
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=61.13 E-value=40 Score=25.15 Aligned_cols=72 Identities=14% Similarity=0.069 Sum_probs=49.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhc-----CCCCHHHHHHHHHHHHHhh
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS-----RDDFPQLQFEAAWALTNIA 143 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~-----~~~~~~~~~~a~~~L~~l~ 143 (402)
.+..+...|.+.++..++.|+..|-.++.....+....+....++..++.+.. ...+..++..+...+...+
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 46677778888899999999999999987654444555666666666655311 1113678888777766543
No 355
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=60.85 E-value=56 Score=31.61 Aligned_cols=82 Identities=21% Similarity=0.202 Sum_probs=55.4
Q ss_pred hHHHHhCCchHHHHHhhC-CCCHHHHHHHHHHHHHhhC---CC----------chhhHHHHhcCChHHHHHHhccchhhH
Q 015687 150 TRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAG---DS----------PKCRDLVLSNGALMPLLAQFNEHAKLS 215 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~---~~----------~~~~~~~~~~g~i~~L~~~l~~~~~~~ 215 (402)
.+.+.+.+.|+.|+.+|. +.+.+++..|+.+|..|.. +. ...-..+.....+..|+..+.......
T Consensus 55 lewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s 134 (475)
T PF04499_consen 55 LEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGS 134 (475)
T ss_pred HHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcc
Confidence 344556899999999997 4678889899888877752 11 223344555667777887765433366
Q ss_pred HHHHHHHHHHHhhhCC
Q 015687 216 MLRNATWTLSNFCRGK 231 (402)
Q Consensus 216 ~~~~a~~~L~~l~~~~ 231 (402)
...+++.++-.|.+..
T Consensus 135 ~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 135 SLVNGVSILIELIRKN 150 (475)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 6777777777776554
No 356
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=60.55 E-value=61 Score=23.92 Aligned_cols=87 Identities=15% Similarity=0.229 Sum_probs=54.4
Q ss_pred CcHHHHHHhcCC----CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC-CchhHHHHHHHHHHHHhc-C
Q 015687 283 GVCPRLVELLRH----PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNITA-G 356 (402)
Q Consensus 283 ~~i~~L~~~L~~----~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~-~ 356 (402)
|++..+-..+.+ .+...+..+++.++.+..-...... .+.|.+...|++. ..++++..|+.+-..+.. -
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 455555555544 4556788899999999874443333 3455666666543 245788888877777765 3
Q ss_pred CHHHHHHHHHcCCHHHHHH
Q 015687 357 NVNQIQAIIEAGIIGPLVN 375 (402)
Q Consensus 357 ~~~~~~~l~~~~~i~~L~~ 375 (402)
+++....+++. ++..++.
T Consensus 86 ~~~~l~~ll~~-~~~~l~~ 103 (107)
T PF08064_consen 86 DEEDLGPLLDQ-IFAILLP 103 (107)
T ss_pred CHHHHHHHHHH-HHHHHHH
Confidence 56777777664 3444443
No 357
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=59.86 E-value=1.3e+02 Score=29.07 Aligned_cols=110 Identities=13% Similarity=0.215 Sum_probs=66.2
Q ss_pred CcHHHHHHhcCCCChhhHHHHHHHHHHhhcC---ChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCC--
Q 015687 283 GVCPRLVELLRHPSPSVLIPALRTVGNIVTG---DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN-- 357 (402)
Q Consensus 283 ~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~---~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~-- 357 (402)
++++.++..+.. +.+..--++.++ +.. .....+-+.+.++++.|+.+|...+++.++..|+-+|+.|..-+
T Consensus 21 ~~v~~llkHI~~--~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n 96 (475)
T PF04499_consen 21 NFVDNLLKHIDT--PAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRN 96 (475)
T ss_pred cHHHHHHHhcCC--cHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 677777777743 345555555555 221 12333444567999999999986668889999999888776421
Q ss_pred -----------HHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHhh
Q 015687 358 -----------VNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNAT 396 (402)
Q Consensus 358 -----------~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~ 396 (402)
..-...+.....+..|+..+-. .....-..++..+..+.
T Consensus 97 ~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLI 147 (475)
T PF04499_consen 97 APQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELI 147 (475)
T ss_pred cccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 2223445555667777776542 22334444444444443
No 358
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.68 E-value=1.1e+02 Score=28.47 Aligned_cols=111 Identities=12% Similarity=0.138 Sum_probs=79.1
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHH
Q 015687 285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQA 363 (402)
Q Consensus 285 i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~ 363 (402)
+.-|+..+.|.+..++..|+..|..+....+.... .--.-+++.+..+..+. +..+|......+-++.. ..++....
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~-~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDD-DSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCc-cccHHHHHHHHHHHHHhhcchhhhcc
Confidence 56688888999999999999999988876443222 11224566777777777 88899988888887664 33444333
Q ss_pred HHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 364 IIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 364 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
++.- +++.+...+..-.+.+|..++..+.-++..
T Consensus 138 ~~~l-~~~yi~~AMThit~~i~~dslkfL~~Ll~~ 171 (393)
T KOG2149|consen 138 MVSL-LMPYISSAMTHITPEIQEDSLKFLSLLLER 171 (393)
T ss_pred hHHH-HHHHHHHHHhhccHHHHHhhHHHHHHHHHH
Confidence 3332 567777778888888998888888776653
No 359
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=59.01 E-value=1.3e+02 Score=26.57 Aligned_cols=189 Identities=17% Similarity=0.226 Sum_probs=96.0
Q ss_pred hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCc
Q 015687 69 KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 148 (402)
Q Consensus 69 ~~~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 148 (402)
.++.+..|.+.|+.+|+... .....+... .+++.+++|.|+..=. + +.+-..++..|.+++- |-
T Consensus 11 cl~~LkdL~r~lr~dd~~~~-~v~r~lg~~----------~iv~~DLiPiL~~~~~--~-~~l~~~~l~LLV~LT~--P~ 74 (266)
T PF04821_consen 11 CLECLKDLKRFLRRDDEDQR-DVRRQLGEW----------NIVQKDLIPILISYKD--D-DKLFLACLRLLVNLTW--PI 74 (266)
T ss_pred HHHHHHHHHHHHHHhCcchH-HHHHHHHHh----------chhhhhHHHHHHhccC--c-hHHHHHHHHHHHHhCC--CH
Confidence 34678888888988777655 333333321 1344556776665533 3 7888999999999886 21
Q ss_pred chHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhc----------cchhhHHHH
Q 015687 149 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN----------EHAKLSMLR 218 (402)
Q Consensus 149 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~----------~~~~~~~~~ 218 (402)
... . +-.| .+..-+.........+. .++..+.+.+++..++.++. ...|..+.+
T Consensus 75 ~~~--~--~~~~--------~~~~~~~~~~~l~~~l~----~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~ 138 (266)
T PF04821_consen 75 ELL--V--ESQP--------KDKNQRRNIPELLKYLQ----SYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIE 138 (266)
T ss_pred HHh--c--cCCC--------CChHHHHHHHHHHHHHH----HHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHH
Confidence 110 0 0000 12222222222222222 13444444455555555441 123556777
Q ss_pred HHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC-Ch
Q 015687 219 NATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SP 297 (402)
Q Consensus 219 ~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~-~~ 297 (402)
.++..+.|+..-++.+....... .+...+. ..+..+.+.|+.+.|+.+.++. ..
T Consensus 139 lvL~LiRNlL~Ip~~~~~~~~~~-----------~~~~~~d--------------~li~~l~~~~v~~lLL~l~s~~~~~ 193 (266)
T PF04821_consen 139 LVLTLIRNLLAIPDPPSASKRSD-----------EDSSLHD--------------QLIWALFESGVLDLLLTLASSPQES 193 (266)
T ss_pred HHHHHHHHHhcCCCCcccccccc-----------hhHHHHH--------------HHHHHHHHcCHHHHHHHHHhCcccc
Confidence 77777788776642221111100 1112222 2334455667778888877665 23
Q ss_pred hhHHHHHHHHHHhhcCC
Q 015687 298 SVLIPALRTVGNIVTGD 314 (402)
Q Consensus 298 ~v~~~a~~~l~nl~~~~ 314 (402)
......+.++.-+..+.
T Consensus 194 ~f~~~lLEIi~ll~k~~ 210 (266)
T PF04821_consen 194 DFNLLLLEIIYLLFKGQ 210 (266)
T ss_pred chhhHHHHHHHHHHcCC
Confidence 33345566666665543
No 360
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=58.98 E-value=60 Score=24.02 Aligned_cols=86 Identities=15% Similarity=0.227 Sum_probs=53.1
Q ss_pred CcHHHHHHhcCCCC----hhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC-CchhHHHHHHHHHHHHhc-C
Q 015687 283 GVCPRLVELLRHPS----PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNITA-G 356 (402)
Q Consensus 283 ~~i~~L~~~L~~~~----~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~-~ 356 (402)
|++..+-..+.+.+ ..-+..++++++.+......... .+.|.+...|++. +.++++..|+.+-..+.. -
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~-----~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS-----SALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 55666666665543 24578899999988873332222 3455555555543 256788888877777765 3
Q ss_pred CHHHHHHHHHcCCHHHHH
Q 015687 357 NVNQIQAIIEAGIIGPLV 374 (402)
Q Consensus 357 ~~~~~~~l~~~~~i~~L~ 374 (402)
+++.+..+++. .+..++
T Consensus 86 ~~~~l~~ll~~-~~~~i~ 102 (107)
T smart00802 86 KEEELGPLLDQ-IFAAIL 102 (107)
T ss_pred CHHHHHHHHHH-HHHHHH
Confidence 56777777764 333333
No 361
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=57.81 E-value=19 Score=28.33 Aligned_cols=27 Identities=37% Similarity=0.544 Sum_probs=20.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhh
Q 015687 370 IGPLVNLLLNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 370 i~~L~~ll~~~~~~v~~~a~~aL~nl~ 396 (402)
+..|+++|.+++..+...|+.+|.+..
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 678999999999999999999998753
No 362
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=57.76 E-value=3e+02 Score=30.41 Aligned_cols=72 Identities=11% Similarity=0.142 Sum_probs=53.2
Q ss_pred CChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 325 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 325 ~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
+++|.|-.-|.+. +..+|..|...++.+......+.. =-...+....+.-+.+.+++||-+++....++...
T Consensus 259 ~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 259 AVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred HHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence 8899999988888 899999999999999875333222 00123455666667788899999988887776543
No 363
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=57.60 E-value=2.3e+02 Score=29.05 Aligned_cols=121 Identities=15% Similarity=0.216 Sum_probs=78.2
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchh--HHhh-----------------------------cCcHHH
Q 015687 70 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPIN--EVIQ-----------------------------SGVVPR 118 (402)
Q Consensus 70 ~~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~--~~~~-----------------------------~g~i~~ 118 (402)
+..+..|+....+......+.++.+|..++-..--|.++ .+-+ ..+|..
T Consensus 229 lk~lEtLls~c~KKsk~~a~~~l~~LkdlfI~~LLPdRKLk~f~qrp~~~l~~~~~~~k~Ll~WyfE~~LK~ly~rfiev 308 (988)
T KOG2038|consen 229 LKSLETLLSSCKKKSKRDALQALPALKDLFINGLLPDRKLKYFSQRPLLELTNKRLRDKILLMWYFEHELKILYFRFIEV 308 (988)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCcchhhHHHhhChhhhccccccccceehHHHHHHHHHHHHHHHHHH
Confidence 345677777777666666666777666554332111111 0100 012333
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHH
Q 015687 119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL 196 (402)
Q Consensus 119 L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 196 (402)
|..+-.++- +.++..++..+..+....|++-.. ++..|+.-|.+++..+...|...|-+|....|..+..++
T Consensus 309 Le~lS~D~L-~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vvi 380 (988)
T KOG2038|consen 309 LEELSKDPL-EEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVVI 380 (988)
T ss_pred HHHHccccH-HHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeehH
Confidence 334433444 788899999999988877776543 566778888899999999999999999888887665543
No 364
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=57.56 E-value=2e+02 Score=28.25 Aligned_cols=220 Identities=14% Similarity=0.166 Sum_probs=126.1
Q ss_pred CchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhH------HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD------LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~------~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
|-+..|++-+++++++++..++..|..+...+...-. .++.. ....++....+..+....+..+.+|+.||..
T Consensus 47 ~dLellVeriqd~d~~l~~~sLn~LkeviksStSsmtavpkplkfLrp-~y~dl~~iydkw~~~n~K~~LaDilS~l~m~ 125 (881)
T COG5110 47 GDLELLVERIQDPDIDLQNNSLNMLKEVIKSSTSSMTAVPKPLKFLRP-NYLDLLEIYDKWLEGNKKRWLADILSALCMV 125 (881)
T ss_pred ccHHHHHHHhhCCChHHHHHHHHHHHHHHhccccccccCCchhhhcCC-CcchHHHHHhhccCcchhhHHHHHHHHHeee
Confidence 6789999999999999999999999988765432111 11111 2234455554666777888889999988876
Q ss_pred CCCCc-hh-------------------hhhchHHHHHHhccCC-------ChhHHHHHHHHHHHhccC--ChHHHHHHHH
Q 015687 231 KPQPL-FE-------------------QTRPALPALERLIHSN-------DDEVLTDACWALSYLSDG--TNDKIQAVIE 281 (402)
Q Consensus 231 ~~~~~-~~-------------------~~~~~l~~L~~lL~~~-------~~~v~~~a~~~l~~l~~~--~~~~~~~~~~ 281 (402)
..... .. ++..+...+.....+. -.+.+.-++.++-++..+ ..+.++.+++
T Consensus 126 yse~~kh~sL~YRl~g~i~D~~~WGHeYvrhLa~eI~ev~n~~~e~daps~~dt~~l~l~ivpfflkHNaE~dAiDlL~E 205 (881)
T COG5110 126 YSENGKHKSLAYRLEGNIIDLKEWGHEYVRHLAGEIAEVKNDQNEMDAPSFADTRDLGLEIVPFFLKHNAEFDAIDLLVE 205 (881)
T ss_pred cccccchhhHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhcchhhccCCchhHHHHHHHHHhHHHHhcccchHHHHHHHH
Confidence 53211 10 1111122222222211 145666777777777654 3466788899
Q ss_pred hCcHHHHHHhcCCCChh-hHHHH---------------HHHHHHhhcCChHHHHHH---HhCCChHHHHHHhcCCCchhH
Q 015687 282 AGVCPRLVELLRHPSPS-VLIPA---------------LRTVGNIVTGDDMQTQCI---INHQALPCLLDLLTQNYKKSI 342 (402)
Q Consensus 282 ~~~i~~L~~~L~~~~~~-v~~~a---------------~~~l~nl~~~~~~~~~~i---~~~~~l~~L~~ll~~~~~~~v 342 (402)
-|.++.++++....+.. +.... +++.-.+-..-.+.++++ +..+--..+........+|..
T Consensus 206 vg~Iekv~~fVd~~n~~RvclYl~~cv~llp~pedVa~l~ta~~IYlk~~~lt~av~~aiRl~~~~~i~e~~~a~~Dp~~ 285 (881)
T COG5110 206 VGGIEKVLDFVDTHNYNRVCLYLEDCVPLLPPPEDVALLETALKIYLKMGDLTRAVVGAIRLQKSKEIIEYVRAIEDPDY 285 (881)
T ss_pred hcchhhhhhhhcccchhHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccHHHHHHHHHhccChHH
Confidence 99999999998654421 11111 111111111111122222 223334445555555558899
Q ss_pred HHHHHHHHHH--Hhc-CCHHHHHHHHHcCCHHHHHHHh
Q 015687 343 KKEACWTISN--ITA-GNVNQIQAIIEAGIIGPLVNLL 377 (402)
Q Consensus 343 ~~~a~~~L~n--l~~-~~~~~~~~l~~~~~i~~L~~ll 377 (402)
++.+.++|+. +.. .+.+..+.++.+|-+..-+.-+
T Consensus 286 kKQ~~YiLArq~~~~e~~dee~~dil~Ng~lsdhf~yl 323 (881)
T COG5110 286 KKQCLYILARQNLYYEASDEEEKDILSNGYLSDHFRYL 323 (881)
T ss_pred HHHHHHHHHhccCCcccCCHHHHHHhcCCcHHHHHHHH
Confidence 9999999884 332 2345567788887766555544
No 365
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=56.68 E-value=1.9e+02 Score=27.78 Aligned_cols=80 Identities=20% Similarity=0.303 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHH
Q 015687 85 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR 164 (402)
Q Consensus 85 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 164 (402)
...+..|+.+|..+++.-..+....+.+ +.|+..|++.. ..-|..|+-++...+.........-.-....+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~s-a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPS-ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchh-HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 4567778888888877532333333222 26888998887 666778888888887653322111101134566666
Q ss_pred hhCCC
Q 015687 165 LLSSP 169 (402)
Q Consensus 165 lL~~~ 169 (402)
.|..+
T Consensus 176 ~L~~~ 180 (441)
T PF12054_consen 176 ILENP 180 (441)
T ss_pred HHcCC
Confidence 77643
No 366
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=56.58 E-value=2.7e+02 Score=34.09 Aligned_cols=176 Identities=8% Similarity=0.046 Sum_probs=89.4
Q ss_pred cCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHH-----HHhccCCChhHHHHHHHHHHHhccCC
Q 015687 198 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPAL-----ERLIHSNDDEVLTDACWALSYLSDGT 272 (402)
Q Consensus 198 ~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L-----~~lL~~~~~~v~~~a~~~l~~l~~~~ 272 (402)
.+++.+++.-+ .+++..++..+...|.+++............+.-+.+ .+-+..-.-.++...+.++.++....
T Consensus 1125 ~~~~~~lv~eL-~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~ 1203 (3550)
T KOG0889|consen 1125 MNVFSPLVLEL-FNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLG 1203 (3550)
T ss_pred HHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcC
Confidence 34677777777 6677799999999999998775222222222222222 22222223333433344443333211
Q ss_pred h-------HHHHHHHHhCc-----HHH---HHHhcCCC----ChhhHHHHHHHHHHhhcCChHHHHH--HHhCCChHHHH
Q 015687 273 N-------DKIQAVIEAGV-----CPR---LVELLRHP----SPSVLIPALRTVGNIVTGDDMQTQC--IINHQALPCLL 331 (402)
Q Consensus 273 ~-------~~~~~~~~~~~-----i~~---L~~~L~~~----~~~v~~~a~~~l~nl~~~~~~~~~~--i~~~~~l~~L~ 331 (402)
+ +........+. -.. +....... ....+..|...++..+...+-.... -...+++..+.
T Consensus 1204 p~~f~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~f 1283 (3550)
T KOG0889|consen 1204 PCLFDFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFF 1283 (3550)
T ss_pred CcccCchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHH
Confidence 1 11110000000 001 11111111 2235677777777766555432221 23347778888
Q ss_pred HHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH
Q 015687 332 DLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVN 375 (402)
Q Consensus 332 ~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ 375 (402)
+.+..+ .+++...+.-++......++..-...++.+.=|.|..
T Consensus 1284 k~l~~~-~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~ 1326 (3550)
T KOG0889|consen 1284 KSLYKR-SSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMN 1326 (3550)
T ss_pred HHHcCC-hHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHh
Confidence 888888 8888888888888877754444444444433333333
No 367
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=56.27 E-value=2.3e+02 Score=28.58 Aligned_cols=248 Identities=13% Similarity=0.107 Sum_probs=115.2
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHh-----CCchHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID-----HGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDS 188 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-----~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~ 188 (402)
=+..+++-+++++ ++++..|+..+......+......+.+ ..-...|..+-.+ .+++.+...+.+|.-||...
T Consensus 49 dLellVervqdpd-~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~~~~~~n~Kk~laDIlSvLamt~ 127 (878)
T KOG2005|consen 49 DLELLVERVQDPD-PDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYESMADSNLKKWLADILSVLAMTM 127 (878)
T ss_pred hHHHHHHHhcCCC-hHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHHhccCchhHhHHHHHHHHHheee
Confidence 3788999999999 999999999998876543222111111 0112333333333 45677888888888888554
Q ss_pred chhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC-C-CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHH
Q 015687 189 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-K-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALS 266 (402)
Q Consensus 189 ~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~-~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~ 266 (402)
.+-... +..........+- ...+. ..++.+..+..--.. . ..+.+.....+...++.+.-..+.+ ..|+..|.
T Consensus 128 se~~~~-l~YRl~G~~~d~~-~WGHe-YVRhLageIaee~~~~~~e~~~~~dl~~l~~~iV~f~mkHNAE--~eAiDlL~ 202 (878)
T KOG2005|consen 128 SERGEH-LAYRLLGSIIDLG-SWGHE-YVRHLAGEIAEEYNNREMEAPSKADLLDLVQEIVPFHMKHNAE--FEAIDLLM 202 (878)
T ss_pred cccchh-eeeeeccccCChh-hhHHH-HHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHhccch--hHHHHHHH
Confidence 432222 1111111111110 12222 233333333332222 1 2222232333333333333222222 22333333
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhcC-------CCC-hhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCC
Q 015687 267 YLSDGTNDKIQAVIEAGVCPRLVELLR-------HPS-PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY 338 (402)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~i~~L~~~L~-------~~~-~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~ 338 (402)
.+-.- +..-..++..-..+++.+|. .++ ..+...|+.+.-.+...+. .....+..+=.+.+.+...+..
T Consensus 203 Eve~i--d~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~-al~~ai~l~~~~~v~~vf~s~~ 279 (878)
T KOG2005|consen 203 EVEGI--DLLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPR-ALVGAIRLDDMKEVKEVFTSCT 279 (878)
T ss_pred HhhhH--hHHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHH-HHHHHHhcCcHHHHHHHHHhcc
Confidence 22110 11111222222233333321 111 2234444444444443322 2222344455677777777766
Q ss_pred chhHHHHHHHHHHHHh--c--CCHHHHHHHHHcCCHH
Q 015687 339 KKSIKKEACWTISNIT--A--GNVNQIQAIIEAGIIG 371 (402)
Q Consensus 339 ~~~v~~~a~~~L~nl~--~--~~~~~~~~l~~~~~i~ 371 (402)
++..++..++.|+.-- . +..+..+.++.+|-+.
T Consensus 280 D~~~kKQ~~ymLaR~~i~~e~~~~e~l~di~sN~~Ls 316 (878)
T KOG2005|consen 280 DPLLKKQMAYMLARHGIYFELSEDEELQDILSNGKLS 316 (878)
T ss_pred CHHHHHHHHHHHHhcCCceecCcCHHHHHHHccccHH
Confidence 8999999999998433 2 2235567777665543
No 368
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=55.67 E-value=51 Score=23.21 Aligned_cols=66 Identities=12% Similarity=0.120 Sum_probs=43.6
Q ss_pred hCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh----ccCCHHHHHHHHHHHH
Q 015687 323 NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL----LNAEFEIKKEAAWAIS 393 (402)
Q Consensus 323 ~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll----~~~~~~v~~~a~~aL~ 393 (402)
+..++.++..++.+..+.++|.-..-++.++.....+.+ .+| =+.++.++ .+++..+...|..++.
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i----~SG-W~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENI----KSG-WKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHH----Hhc-cHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 345677888887655588999999999999987544433 333 33444443 4466777777766654
No 369
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=54.96 E-value=1e+02 Score=24.15 Aligned_cols=74 Identities=11% Similarity=0.075 Sum_probs=54.1
Q ss_pred chHHHHHhhC-CCCHHHHHHHHHHHHHhhCCC-chhhHHHHhcCChHH-HHHHhccc--hhhHHHHHHHHHHHHhhhCC
Q 015687 158 AVPIFVRLLS-SPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMP-LLAQFNEH--AKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 158 ~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~-L~~~l~~~--~~~~~~~~a~~~L~~l~~~~ 231 (402)
++..|.+=|. +.++.++..|+..|-.+..+. ..+...+...+++.. |+.++... .+..++..++..+...+...
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 4555555555 468888888888888887654 457778888889997 89998532 34578888888888777664
No 370
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=54.80 E-value=52 Score=22.13 Aligned_cols=66 Identities=18% Similarity=0.210 Sum_probs=45.1
Q ss_pred HHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 015687 220 ATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 286 (402)
Q Consensus 220 a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~ 286 (402)
..|+++.|--. |.........+...+...+..-++....+++|.++.+-..+.+.++.+.+...+.
T Consensus 4 il~~fa~LNy~-P~~~~~f~~~~~~~L~~~l~~~~p~~ll~~v~Sl~~l~~~p~~~l~~vf~~~Fl~ 69 (71)
T PF06743_consen 4 ILLPFARLNYQ-PPNAEEFFEKLIERLESYLDEFSPEDLLDLVWSLCLLQRFPEDLLNKVFSPDFLQ 69 (71)
T ss_pred HHHHHHhcCCC-CCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhCCHHHHHHHcCHHHHh
Confidence 44555555533 4433444456666777777777899999999999999888887777776554443
No 371
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=54.32 E-value=2.2e+02 Score=27.85 Aligned_cols=138 Identities=13% Similarity=0.108 Sum_probs=83.9
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc----c---hhhHHHHHHHHHHHHhhhCCCCCc
Q 015687 163 VRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE----H---AKLSMLRNATWTLSNFCRGKPQPL 235 (402)
Q Consensus 163 ~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~----~---~~~~~~~~a~~~L~~l~~~~~~~~ 235 (402)
+..+-+.++..+..|+..|.. | +.... .++.++.++.. + .+-..+.++....+.|..++.-.-
T Consensus 213 t~a~~g~~~~~r~eAL~sL~T---D-sGL~~------LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~l 282 (576)
T KOG2549|consen 213 TEACTGSDEPLRQEALQSLET---D-SGLQQ------LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFL 282 (576)
T ss_pred HHHHhcCCHHHHHHHHHhhcc---C-ccHHH------HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccch
Confidence 333334566666666665543 2 11211 35666666532 2 466778888888888888855445
Q ss_pred hhhhhchHHHHHHhccC----------CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC--ChhhHHHH
Q 015687 236 FEQTRPALPALERLIHS----------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPA 303 (402)
Q Consensus 236 ~~~~~~~l~~L~~lL~~----------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~--~~~v~~~a 303 (402)
..++..++|.++.++-+ +...++.-++..+..++....+.... +...++..+...+.++ ......-+
T Consensus 283 epYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~YGa 361 (576)
T KOG2549|consen 283 EPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHYGA 361 (576)
T ss_pred hhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhhhH
Confidence 56678888888877632 22457888888898888765554443 4556667777776554 23444455
Q ss_pred HHHHHHhh
Q 015687 304 LRTVGNIV 311 (402)
Q Consensus 304 ~~~l~nl~ 311 (402)
+..|..+.
T Consensus 362 i~gL~~lg 369 (576)
T KOG2549|consen 362 IAGLSELG 369 (576)
T ss_pred HHHHHHhh
Confidence 55555543
No 372
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=54.27 E-value=75 Score=29.05 Aligned_cols=78 Identities=27% Similarity=0.411 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhhcCCCcchHHHHhCC--chHHHHHhhCCC---CHHHHHHHHHHHHHhhCCCchhhHHHH------hc
Q 015687 130 QLQFEAAWALTNIASGTSENTRVVIDHG--AVPIFVRLLSSP---TDDVREQAVWALGNVAGDSPKCRDLVL------SN 198 (402)
Q Consensus 130 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~lL~~~---~~~v~~~a~~~L~nl~~~~~~~~~~~~------~~ 198 (402)
.++..|+.++..+.. .+.....++..+ ++.-|+.+++-+ ...++..|+.+|..++.+.+...+.+- .+
T Consensus 237 ~iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~H 315 (329)
T PF06012_consen 237 QIRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSH 315 (329)
T ss_pred HHHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCc
Confidence 445555555555554 356667777766 899999998753 578999999999999988776555443 35
Q ss_pred CChHHHHHHh
Q 015687 199 GALMPLLAQF 208 (402)
Q Consensus 199 g~i~~L~~~l 208 (402)
|++..+++.+
T Consensus 316 GiL~~llR~~ 325 (329)
T PF06012_consen 316 GILPQLLRKC 325 (329)
T ss_pred ccHHHHHHHH
Confidence 5566665543
No 373
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=54.12 E-value=74 Score=29.09 Aligned_cols=75 Identities=23% Similarity=0.273 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHhC--cHHHHHHhcCCCC---hhhHHHHHHHHHHhhcCChHHHHHH------HhCCC
Q 015687 258 LTDACWALSYLSDGTNDKIQAVIEAG--VCPRLVELLRHPS---PSVLIPALRTVGNIVTGDDMQTQCI------INHQA 326 (402)
Q Consensus 258 ~~~a~~~l~~l~~~~~~~~~~~~~~~--~i~~L~~~L~~~~---~~v~~~a~~~l~nl~~~~~~~~~~i------~~~~~ 326 (402)
+-.|+.++.++.. .......++..+ ++..|++++..++ ..++..|+++|..++.......+.+ ..+|+
T Consensus 239 RllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGi 317 (329)
T PF06012_consen 239 RLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGI 317 (329)
T ss_pred HHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCccc
Confidence 3344444444443 334445666666 9999999997654 5799999999999998655333322 14577
Q ss_pred hHHHHHH
Q 015687 327 LPCLLDL 333 (402)
Q Consensus 327 l~~L~~l 333 (402)
++.+++-
T Consensus 318 L~~llR~ 324 (329)
T PF06012_consen 318 LPQLLRK 324 (329)
T ss_pred HHHHHHH
Confidence 7777654
No 374
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=53.48 E-value=1.8e+02 Score=26.46 Aligned_cols=159 Identities=10% Similarity=0.074 Sum_probs=96.4
Q ss_pred hchHHHHHHhcc-C---CChhHHHHHHHHHHHhccCChHHHHHHHHh--------C---cHHHHHHhcC------CCChh
Q 015687 240 RPALPALERLIH-S---NDDEVLTDACWALSYLSDGTNDKIQAVIEA--------G---VCPRLVELLR------HPSPS 298 (402)
Q Consensus 240 ~~~l~~L~~lL~-~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~--------~---~i~~L~~~L~------~~~~~ 298 (402)
..++..|+.++- . ..-+++..|+.++.....++++....+++. . ...-|+..|- ..++.
T Consensus 33 ~pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy 112 (312)
T PF04869_consen 33 VPVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPY 112 (312)
T ss_dssp EEHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HH
T ss_pred ccHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHH
Confidence 344555555442 2 246788999999988777666655555442 0 1112344333 22443
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHhC------------CChHHHHHHhcC----CCchhHHHHHHHHHHHHhcCCHHHHH
Q 015687 299 VLIPALRTVGNIVTGDDMQTQCIINH------------QALPCLLDLLTQ----NYKKSIKKEACWTISNITAGNVNQIQ 362 (402)
Q Consensus 299 v~~~a~~~l~nl~~~~~~~~~~i~~~------------~~l~~L~~ll~~----~~~~~v~~~a~~~L~nl~~~~~~~~~ 362 (402)
-.--|+.++..+...+++.......- ..++.+..+|.. ..++.++..-...|+--..+++..+.
T Consensus 113 ~~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~ 192 (312)
T PF04869_consen 113 RCWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVN 192 (312)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHH
Confidence 44468888899998888766655421 246667766644 33666766666677766678899999
Q ss_pred HHHHc-CCHHHHHHHhcc---CCHHHHHHHHHHHHHhhcC
Q 015687 363 AIIEA-GIIGPLVNLLLN---AEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 363 ~l~~~-~~i~~L~~ll~~---~~~~v~~~a~~aL~nl~~~ 398 (402)
.+++. ..++.|+..... .+.-|+--++..|+-+...
T Consensus 193 ~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef 232 (312)
T PF04869_consen 193 DFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEF 232 (312)
T ss_dssp HHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHh
Confidence 99975 479999997533 4567888888888776553
No 375
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.67 E-value=3e+02 Score=28.99 Aligned_cols=95 Identities=17% Similarity=0.135 Sum_probs=65.5
Q ss_pred CcHHHHHHhcCCCChhhHHHHHHHHHHhh---cCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH
Q 015687 283 GVCPRLVELLRHPSPSVLIPALRTVGNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359 (402)
Q Consensus 283 ~~i~~L~~~L~~~~~~v~~~a~~~l~nl~---~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~ 359 (402)
.++.+...+|++++-.+|..++.++.-.. ...+...- -.-+..-|.++..+..+ +|-+..-|+.++-+++..+.+
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~Ll-Plvhq~W~~vie~~~~k-~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLL-PLVHQTWPSVIECLLCK-DPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHh-HHHHhhhhHHHHHHhcC-chHHHHHHHHHHHHHHHHhhh
Confidence 45566666777888888888888775432 22221211 22346678888888888 999999999999999987666
Q ss_pred HHHHHHHcCCHHHHHHHhcc
Q 015687 360 QIQAIIEAGIIGPLVNLLLN 379 (402)
Q Consensus 360 ~~~~l~~~~~i~~L~~ll~~ 379 (402)
.+..=+-.+++|.+-.++.+
T Consensus 881 Fv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 881 FVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66555545588888766654
No 376
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.64 E-value=1.3e+02 Score=33.34 Aligned_cols=205 Identities=14% Similarity=0.104 Sum_probs=117.3
Q ss_pred cchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc---chhhHHHHHHHHH-
Q 015687 148 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE---HAKLSMLRNATWT- 223 (402)
Q Consensus 148 ~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~---~~~~~~~~~a~~~- 223 (402)
+.+..+++.|....+..-+++.++.++..|.|++.-.-.+-...-......-.+..++.+... .+++.+.....-.
T Consensus 1430 ~~r~~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~ 1509 (1758)
T KOG1791|consen 1430 EIRLIFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFI 1509 (1758)
T ss_pred hcchhhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHH
Confidence 334467888999999999999999999999888776543333211222222233444444421 2233332222222
Q ss_pred --HHHhhhCCCCC-ch----------hhhhchHHHHHHhccCCChhH---HHHHHHHHHHhccCChHHHHHHHHhCcHHH
Q 015687 224 --LSNFCRGKPQP-LF----------EQTRPALPALERLIHSNDDEV---LTDACWALSYLSDGTNDKIQAVIEAGVCPR 287 (402)
Q Consensus 224 --L~~l~~~~~~~-~~----------~~~~~~l~~L~~lL~~~~~~v---~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~ 287 (402)
.+.++-.+... .. ......+|.+-..+.+..++- +.-.+..+.......++ .+.....+.+..
T Consensus 1510 A~~~~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~~D-~ql~~~~~~~~~ 1588 (1758)
T KOG1791|consen 1510 AFFSDILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSCPD-YQLLQIRNIFET 1588 (1758)
T ss_pred HHHHHHHcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCchh-hhHHhhcCcceE
Confidence 22333332111 00 011345666777776655443 34444444443333443 466777888888
Q ss_pred HHHhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCC-chhHHHH-HHHHHHHH
Q 015687 288 LVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKE-ACWTISNI 353 (402)
Q Consensus 288 L~~~L~~~--~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~-~~~v~~~-a~~~L~nl 353 (402)
+....+++ +...+.-.+.++++-+.........+-..|+...+..++.+++ ++..+++ ...++.++
T Consensus 1589 ~lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v~~~l 1658 (1758)
T KOG1791|consen 1589 LLSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISVLKVL 1658 (1758)
T ss_pred eehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhccccccchHHHhhhHHHHHHHH
Confidence 88888775 3444557788888888776666666677899999999998874 3344444 33344443
No 377
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=50.43 E-value=82 Score=31.98 Aligned_cols=106 Identities=13% Similarity=0.070 Sum_probs=60.7
Q ss_pred hchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 015687 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 319 (402)
Q Consensus 240 ~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~ 319 (402)
..++.+|..+-+..=+.+...++.++..|..+.++.-. .++..++.-|.+++..+...|-..|-+|.+..|.
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~-----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPn--- 374 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN-----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPN--- 374 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH-----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCc---
Confidence 34455555555555567777777777777665554422 3456777777777777777777777777665552
Q ss_pred HHHhCCChHHHHHHhcCC-CchhHHHHHHHHHHHHhc
Q 015687 320 CIINHQALPCLLDLLTQN-YKKSIKKEACWTISNITA 355 (402)
Q Consensus 320 ~i~~~~~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~ 355 (402)
+..-++.-+-.++-.+ -+...+-+|+..|..+.-
T Consensus 375 --MK~Vvi~EIer~~FRpn~~~ra~Yyav~fLnQ~~L 409 (988)
T KOG2038|consen 375 --MKIVVIDEIERLAFRPNVSERAHYYAVIFLNQMKL 409 (988)
T ss_pred --ceeehHHHHHHHHcccCccccceeehhhhhhhhHh
Confidence 1223355555555433 123344455555555543
No 378
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=50.20 E-value=58 Score=26.91 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=53.1
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 015687 286 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 365 (402)
Q Consensus 286 ~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 365 (402)
+.+.....+++.-++..+..++...... ..... .+++.+-.++.++ +..|++...|+|..++...++.+..++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~d~-~~~Vqkav~w~L~~~~~~~~~~v~~~l 180 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-ETDFD-----LLLEIIERLLHDE-EYFVQKAVGWALREYGKKDPERVIAFL 180 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cccHH-----HHHHHHHHhCCCH-HHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 5677788888888888887777665543 11122 2344555556666 889999999999999998788776666
Q ss_pred Hc
Q 015687 366 EA 367 (402)
Q Consensus 366 ~~ 367 (402)
+.
T Consensus 181 ~~ 182 (197)
T cd06561 181 EK 182 (197)
T ss_pred HH
Confidence 53
No 379
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=49.66 E-value=17 Score=21.58 Aligned_cols=25 Identities=8% Similarity=0.185 Sum_probs=20.2
Q ss_pred CCHHHHHHHhccCCHHHHHHHHHHH
Q 015687 368 GIIGPLVNLLLNAEFEIKKEAAWAI 392 (402)
Q Consensus 368 ~~i~~L~~ll~~~~~~v~~~a~~aL 392 (402)
.+...+...+.++++.||+.|..+|
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4567777889999999999998753
No 380
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=49.60 E-value=1e+02 Score=28.62 Aligned_cols=92 Identities=12% Similarity=0.103 Sum_probs=55.2
Q ss_pred CCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHH
Q 015687 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN-VNQIQAIIEAGIIG 371 (402)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~ 371 (402)
..+++.+...+|.-+++=-.+.. .++..|.+-|.+. ++.|...|...+..+.+.+ ......+...++..
T Consensus 22 T~enW~~IlDvCD~v~~~~~~~k---------d~lk~i~KRln~~-dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~ 91 (462)
T KOG2199|consen 22 TSENWSLILDVCDKVGSDPDGGK---------DCLKAIMKRLNHK-DPHVVLQALTLLDACVANCGKRFRLEVSSRDFTT 91 (462)
T ss_pred ccccHHHHHHHHHhhcCCCcccH---------HHHHHHHHHhcCC-CcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHH
Confidence 34556666666555544332222 3455677777777 8888888887777777643 33344555666777
Q ss_pred HHHHHhc-cCCHHHHHHHHHHHHH
Q 015687 372 PLVNLLL-NAEFEIKKEAAWAISN 394 (402)
Q Consensus 372 ~L~~ll~-~~~~~v~~~a~~aL~n 394 (402)
.|..++. ...++|++.....+-+
T Consensus 92 el~al~~~~~h~kV~~k~~~lv~e 115 (462)
T KOG2199|consen 92 ELRALIESKAHPKVCEKMRDLVKE 115 (462)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHH
Confidence 7777776 4556666555444443
No 381
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.57 E-value=58 Score=33.88 Aligned_cols=96 Identities=16% Similarity=0.088 Sum_probs=68.0
Q ss_pred hhchHHHHHHhccCCChhHHHHHHHHHHHhc----cCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCC
Q 015687 239 TRPALPALERLIHSNDDEVLTDACWALSYLS----DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 314 (402)
Q Consensus 239 ~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~----~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~ 314 (402)
+..++..-.++|.+.+..++..++.++.... .+.+.... ++. -.-+.++..+...++-+...|+.+|-+++...
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlP-lvh-q~W~~vie~~~~k~~L~v~~a~~~i~~m~~~s 878 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLP-LVH-QTWPSVIECLLCKDPLIVQRAFSCIEQMGKYS 878 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhH-HHH-hhhhHHHHHHhcCchHHHHHHHHHHHHHHHHh
Confidence 3555666677888999999999998887643 34443332 232 35688999999999999999999999999876
Q ss_pred hHHHHHHHhCCChHHHHHHhcC
Q 015687 315 DMQTQCIINHQALPCLLDLLTQ 336 (402)
Q Consensus 315 ~~~~~~i~~~~~l~~L~~ll~~ 336 (402)
.+....=+-..++|.+-.++..
T Consensus 879 gDFv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 879 GDFVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 6544433334677777766643
No 382
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=47.72 E-value=1.4e+02 Score=24.04 Aligned_cols=75 Identities=13% Similarity=0.076 Sum_probs=51.9
Q ss_pred cCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCCh
Q 015687 198 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 273 (402)
Q Consensus 198 ~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~ 273 (402)
.|.+...+..+....|..+...++.++.+.... ..-.......++|.+..+|.+..+.-...++..+..+...-.
T Consensus 27 ~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~-~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~ 101 (164)
T PF13925_consen 27 RNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKP-EKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFG 101 (164)
T ss_pred cCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCc-CcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 344555555554557777777777777654443 234445557889999999999998888888888887775433
No 383
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.57 E-value=3.7e+02 Score=27.92 Aligned_cols=317 Identities=13% Similarity=0.171 Sum_probs=163.4
Q ss_pred HHHHHhhcCC--CHHHHHHHHHHHHHHhccC---CCCchhHHhhc--CcH-HHHHHhhcCCCCHHHHHHHHHHHHHhhcC
Q 015687 74 PAMVAGVWSD--DRNIQLDATTQFRKLLSIE---RSPPINEVIQS--GVV-PRFIEFLSRDDFPQLQFEAAWALTNIASG 145 (402)
Q Consensus 74 ~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~---~~~~~~~~~~~--g~i-~~L~~lL~~~~~~~~~~~a~~~L~~l~~~ 145 (402)
-.+++.+.++ |+..+..|+..+.+.+..+ ..+....+.++ ..+ ..++.++-+.. ..+|..--.+|.-|+..
T Consensus 40 l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~-~~iQ~qlseal~~Ig~~ 118 (960)
T KOG1992|consen 40 LLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSP-FNIQKQLSEALSLIGKR 118 (960)
T ss_pred HHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHhcc
Confidence 4566666653 6888899999999887632 01111122221 123 33455555555 68888888888888853
Q ss_pred C-CcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhC-CCchhhHHHH--h----cC-ChHHHHHHhcc------
Q 015687 146 T-SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG-DSPKCRDLVL--S----NG-ALMPLLAQFNE------ 210 (402)
Q Consensus 146 ~-~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~--~----~g-~i~~L~~~l~~------ 210 (402)
+ |+.-. ..+|-|+.-+++.|-.+....+.+-..+-. ..+.+|..-+ + .+ .-.++..++.+
T Consensus 119 DFP~kWp-----tLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~ 193 (960)
T KOG1992|consen 119 DFPDKWP-----TLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQ 193 (960)
T ss_pred ccchhhH-----HHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh
Confidence 2 22222 246667777776665554444444443431 2222222111 0 00 11133333311
Q ss_pred --chhhH-------HHHHHHHHHHHhhhCC-CCCchhhhhchHHHHHHhccCCC-------------hhHHHHHHHHHHH
Q 015687 211 --HAKLS-------MLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSND-------------DEVLTDACWALSY 267 (402)
Q Consensus 211 --~~~~~-------~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~~-------------~~v~~~a~~~l~~ 267 (402)
..+.. ++.-.|..+..|+..+ |.--...+...++.+.++|..++ .+++...|..+.-
T Consensus 194 ~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~L 273 (960)
T KOG1992|consen 194 RHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNL 273 (960)
T ss_pred hcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHH
Confidence 11222 2223333444555443 32222344666777777775322 2355667777766
Q ss_pred hccCChHHHHHHHHhCcHHHHHHhcCCCC-----hhhHHHHHHHHHHhhcCChH--------------------------
Q 015687 268 LSDGTNDKIQAVIEAGVCPRLVELLRHPS-----PSVLIPALRTVGNIVTGDDM-------------------------- 316 (402)
Q Consensus 268 l~~~~~~~~~~~~~~~~i~~L~~~L~~~~-----~~v~~~a~~~l~nl~~~~~~-------------------------- 316 (402)
.+...++..+.++. ..+.....+|.+.. +.....|+..|.+++.....
T Consensus 274 Y~~kYeEef~~fl~-~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~ 352 (960)
T KOG1992|consen 274 YATKYEEEFQPFLP-DFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILRE 352 (960)
T ss_pred HHHhhHHHHHhhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccch
Confidence 66555555443332 23333444443221 34556677777777653210
Q ss_pred HHHHHHhCCChHHHHHHhcCCCchhH-HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH-Hhc--cCCHHHHHHHHHHH
Q 015687 317 QTQCIINHQALPCLLDLLTQNYKKSI-KKEACWTISNITAGNVNQIQAIIEAGIIGPLVN-LLL--NAEFEIKKEAAWAI 392 (402)
Q Consensus 317 ~~~~i~~~~~l~~L~~ll~~~~~~~v-~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~-ll~--~~~~~v~~~a~~aL 392 (402)
.-..+.+..-++++-+-|..+ |.+. |+.||-.+..++......+..++... +..+++ ... +.+.+-+..|.+.+
T Consensus 353 eDeElFED~pleYiRRDlEGs-DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~-v~~~l~~y~~nPS~nWk~kd~aiyL~ 430 (960)
T KOG1992|consen 353 EDEELFEDNPLEYIRRDLEGS-DVDTRRRAAIDLVRGLCKNFEGQVTGVFSSE-VQRLLDQYSKNPSGNWKKKDRAIYLV 430 (960)
T ss_pred hhHHHhccCHHHHHHHhcccC-CcchhHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHhccCCCccccccchhhhhh
Confidence 112233456777777777766 5554 45667778888876556666665442 222222 222 35566677777777
Q ss_pred HHhhcCC
Q 015687 393 SNATSGG 399 (402)
Q Consensus 393 ~nl~~~~ 399 (402)
..++..|
T Consensus 431 talaik~ 437 (960)
T KOG1992|consen 431 TALAIKG 437 (960)
T ss_pred HHHHhhc
Confidence 7777654
No 384
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.93 E-value=27 Score=31.73 Aligned_cols=61 Identities=8% Similarity=0.071 Sum_probs=48.9
Q ss_pred HHHHHHHhhcCChHHHHHHHhCCChHHHHHHh--cCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 015687 303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLL--TQNYKKSIKKEACWTISNITAGNVNQIQAI 364 (402)
Q Consensus 303 a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll--~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 364 (402)
..+.|+++|...++..+.+-+.|+++.++.-- ++. +|-+++....++.++...+.++...+
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~-nPfi~e~sI~c~r~Ll~nN~~NQ~~i 438 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDW-NPFIREISILCTRLLLQNNIENQKII 438 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCC-ChHHHHHHHHHHHHHHhcchhhHHHH
Confidence 67799999998888888888889998887643 444 89999999999999998766654433
No 385
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=44.87 E-value=78 Score=23.73 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=32.1
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHh
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID 155 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 155 (402)
+++.|+.-|.+++ +++...|+.+|...+... .....++.
T Consensus 9 ~i~lLv~QL~D~~-~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPS-PEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 4788999999988 899999999999999874 56665554
No 386
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=43.94 E-value=2.5e+02 Score=25.38 Aligned_cols=83 Identities=12% Similarity=0.175 Sum_probs=61.5
Q ss_pred hCcHHHHHHhcCCC--ChhhHHHHHHHHHHhhcCChH-HH-HHHHhCCChHHHHHHhcCCCc--hhHHHHHHHHHHHHhc
Q 015687 282 AGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDM-QT-QCIINHQALPCLLDLLTQNYK--KSIKKEACWTISNITA 355 (402)
Q Consensus 282 ~~~i~~L~~~L~~~--~~~v~~~a~~~l~nl~~~~~~-~~-~~i~~~~~l~~L~~ll~~~~~--~~v~~~a~~~L~nl~~ 355 (402)
.|.+..++..+..+ +...+-.-.+++-.+..+.+. .. ..+.+.|+++.++..+-++.. ..+.....=.||-+..
T Consensus 94 ~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK 173 (303)
T PF12463_consen 94 KGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIK 173 (303)
T ss_pred ccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHC
Confidence 47788888877543 456788888999999988766 23 356688999999987765522 3577888889999999
Q ss_pred CCHHHHHHH
Q 015687 356 GNVNQIQAI 364 (402)
Q Consensus 356 ~~~~~~~~l 364 (402)
+++...+.+
T Consensus 174 ~n~~~f~~l 182 (303)
T PF12463_consen 174 FNRDAFQRL 182 (303)
T ss_pred CCHHHHHHH
Confidence 877765544
No 387
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=43.11 E-value=1.8e+02 Score=23.63 Aligned_cols=110 Identities=9% Similarity=0.097 Sum_probs=59.1
Q ss_pred CcHHHHHHhcCCCChhhHHHHHHHHHHhh-cCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHH---Hhc---
Q 015687 283 GVCPRLVELLRHPSPSVLIPALRTVGNIV-TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN---ITA--- 355 (402)
Q Consensus 283 ~~i~~L~~~L~~~~~~v~~~a~~~l~nl~-~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~n---l~~--- 355 (402)
|.-+-|.+++.+....-...|..++..+. .-..+....+++ .++|.+.+.|.++.+.++ -+|+|+- ++.
T Consensus 42 ~~W~eL~d~Ils~~~~e~~kA~~IF~~L~~~l~~efl~~~~~-~L~~~~~~~L~~p~~~d~---~~W~LAl~~a~~~~Iq 117 (174)
T PF04510_consen 42 GGWDELSDCILSLSENEPVKAFHIFICLPMPLYGEFLIPFME-NLLPEISKVLLPPEEVDV---EDWVLALTGAVCMAIQ 117 (174)
T ss_pred CCchhHHHHHHHhhccchHHHHHHHHhCCchhhhhHHHHHHH-HHHHHHHHHcCCchhccH---HHHHHHHHHHHHHHHH
Confidence 44455555554333333467777777776 333444455555 488888888877733333 3343332 111
Q ss_pred --CCH---HHHHHHHHcCCHHHHHHHhccCCH-HHHHHHHHHHHHhhc
Q 015687 356 --GNV---NQIQAIIEAGIIGPLVNLLLNAEF-EIKKEAAWAISNATS 397 (402)
Q Consensus 356 --~~~---~~~~~l~~~~~i~~L~~ll~~~~~-~v~~~a~~aL~nl~~ 397 (402)
.++ +..+.++.. ++..+-++++.+.. ..-..|..-+-.+..
T Consensus 118 l~e~~~~~~~vk~L~~~-mv~Sv~elV~~g~E~~~l~rgl~~~e~~v~ 164 (174)
T PF04510_consen 118 LLESSMRVDLVKELLPK-MVKSVKELVERGMEVGFLRRGLRDFESFVS 164 (174)
T ss_pred HhccccHHHHHHHHHHH-HHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 122 333333333 56666666666665 666666666555543
No 388
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=42.27 E-value=1.2e+02 Score=22.31 Aligned_cols=67 Identities=18% Similarity=0.108 Sum_probs=43.4
Q ss_pred CChHHHHHHhcC---CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHhh
Q 015687 325 QALPCLLDLLTQ---NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNAT 396 (402)
Q Consensus 325 ~~l~~L~~ll~~---~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~ 396 (402)
|++..+...+.+ ..+...|+.+...+..+..-..+.+.. +.|.+...|+. ..++++..|+.+...+.
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~-----~~pQI~a~L~sal~~~~l~~~al~~W~~fi 82 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISS-----ARPQIMACLQSALEIPELREEALSCWNCFI 82 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 556666666655 335678889999999888743444443 34555555554 34578888887776654
No 389
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=42.10 E-value=51 Score=24.72 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=28.5
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDS 188 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~ 188 (402)
+|+.|+.-|.+++++|...|+.+|...|.+.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 5888999999999999999999999999877
No 390
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=41.34 E-value=3.6e+02 Score=30.39 Aligned_cols=128 Identities=13% Similarity=0.096 Sum_probs=63.8
Q ss_pred cchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 015687 210 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 289 (402)
Q Consensus 210 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~ 289 (402)
.+.++.++..+......+..... ...-..++..|+..+-+++..-...|+..|..|+.......... +..+..++
T Consensus 445 ~S~e~~v~~FG~~~Y~~lF~~fd---s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~f--a~~l~giL 519 (1426)
T PF14631_consen 445 RSKEPSVREFGSHLYKYLFKEFD---SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPF--ATFLKGIL 519 (1426)
T ss_dssp TSSSHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHT--HHHHHGGG
T ss_pred hCCCHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHHHH
Confidence 34556666666666666665541 11224566677666655555445677888888886444332211 12344444
Q ss_pred HhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHH
Q 015687 290 ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 344 (402)
Q Consensus 290 ~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~ 344 (402)
+++.+=+..-......+++.++........ -+...+--.+-+.|.++ ++..++
T Consensus 520 D~l~~Ls~~qiR~lf~il~~La~~~~~~~s-~i~del~ivIRKQLss~-~~~~K~ 572 (1426)
T PF14631_consen 520 DYLDNLSLQQIRKLFDILCTLAFSDSSSSS-SIQDELHIVIRKQLSSS-NPKYKR 572 (1426)
T ss_dssp GGGGG--HHHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHT-S-SHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCcccch-hhHHHHHHHHHHhhcCC-cHHHHH
Confidence 555444443344557777777653221111 12223334455677777 666664
No 391
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=41.06 E-value=2.8e+02 Score=31.27 Aligned_cols=148 Identities=13% Similarity=0.122 Sum_probs=80.4
Q ss_pred cHHHHHH----hhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 015687 115 VVPRFIE----FLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 190 (402)
Q Consensus 115 ~i~~L~~----lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 190 (402)
.++.++. ++.+.+ +.++.-+......+-...+. .....++..|+.++.+.+..-...|+.+|..|+...+.
T Consensus 432 ~f~siL~la~~Ll~S~e-~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~ 506 (1426)
T PF14631_consen 432 YFPSILSLAQSLLRSKE-PSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPS 506 (1426)
T ss_dssp SHHHHHHHHHHHHTSSS-HHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHH
Confidence 4444443 445666 78888777777766654322 23334788888888666665567999999999975543
Q ss_pred hhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHH----HHHHHHHH
Q 015687 191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVL----TDACWALS 266 (402)
Q Consensus 191 ~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~----~~a~~~l~ 266 (402)
. ...-...+..+++.+ .+-+..-.+.+...|+.++..........-..+--.+-+.|.+.++... ..++..+.
T Consensus 507 ~--l~~fa~~l~giLD~l-~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i~ 583 (1426)
T PF14631_consen 507 E--LQPFATFLKGILDYL-DNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMIK 583 (1426)
T ss_dssp H--HHHTHHHHHGGGGGG-GG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHH
Confidence 1 211122444555555 3344555666788888887654222112223333345566777776653 23444555
Q ss_pred Hhcc
Q 015687 267 YLSD 270 (402)
Q Consensus 267 ~l~~ 270 (402)
.++.
T Consensus 584 ~la~ 587 (1426)
T PF14631_consen 584 HLAA 587 (1426)
T ss_dssp HTT-
T ss_pred HHHH
Confidence 5553
No 392
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.55 E-value=59 Score=31.24 Aligned_cols=70 Identities=11% Similarity=0.050 Sum_probs=53.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCch-hHHhhcCcHHHHHHhhcCC-CCHHHHHHHHHHHHH
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPI-NEVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTN 141 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~-~~~~~~g~i~~L~~lL~~~-~~~~~~~~a~~~L~~ 141 (402)
+++..|.+.|++.++.+++.|+..|-.++.. ....+ ..+.+.++++.+|...... .+..+|..++..|-.
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkN-CG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKN-CGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 4677888888888889999999977777543 23444 4688999999999999876 447888888887754
No 393
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.38 E-value=2.1e+02 Score=27.64 Aligned_cols=93 Identities=11% Similarity=0.132 Sum_probs=64.2
Q ss_pred hcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHH-HHHHcCC
Q 015687 291 LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ-AIIEAGI 369 (402)
Q Consensus 291 ~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~-~l~~~~~ 369 (402)
.|..+++..-...|..|..--.+.. .++..|.+-+.+. .+.++..|..+|--+...+.+... .+.+.++
T Consensus 13 ~l~~pDWa~NleIcD~IN~~~~~~~---------eAvralkKRi~~k-~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~f 82 (470)
T KOG1087|consen 13 SLAEPDWALNLEICDLINSTEGGPK---------EAVRALKKRLNSK-NSKVQLLALTLLETCVKNCGYSFHLQVASKEF 82 (470)
T ss_pred cccCccHHHHHHHHHHHhcCccCcH---------HHHHHHHHHhccC-CcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3456677666666666644333322 2344677788887 778888888877666665555555 6668899
Q ss_pred HHHHHHHhccC--CHHHHHHHHHHHH
Q 015687 370 IGPLVNLLLNA--EFEIKKEAAWAIS 393 (402)
Q Consensus 370 i~~L~~ll~~~--~~~v~~~a~~aL~ 393 (402)
+..++.+.... +.+||..++..|-
T Consensus 83 L~emVk~~k~~~~~~~Vr~kiL~LI~ 108 (470)
T KOG1087|consen 83 LNEMVKRPKNKPRDLKVREKILELID 108 (470)
T ss_pred HHHHHhccccCCcchhHHHHHHHHHH
Confidence 99999998765 5789988887764
No 394
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=40.10 E-value=3.2e+02 Score=25.60 Aligned_cols=180 Identities=13% Similarity=0.099 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHH
Q 015687 169 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 248 (402)
Q Consensus 169 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ 248 (402)
+...-.+.|...+.+....-|...+. +++.-+.++ .+.|..+++.|..-|-.+|.+ .....+.+.|++
T Consensus 36 ~~~k~k~lasq~ip~~fk~fp~la~~-----a~da~~d~~-ed~d~~ir~qaik~lp~fc~~------d~~~rv~d~l~q 103 (460)
T KOG2213|consen 36 GTSKEKRLASQFIPRFFKHFPSLADE-----AIDAQLDLC-EDDDVGIRRQAIKGLPLFCKG------DALSRVNDVLVQ 103 (460)
T ss_pred cchHHHHHHHHHHHHHHhhCchhhhH-----HHHhhhccc-cccchhhHHHHHhccchhccC------chhhhhHHHHHH
Q ss_pred hccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHH-HHhhcCChHHHHHHHhCCCh
Q 015687 249 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV-GNIVTGDDMQTQCIINHQAL 327 (402)
Q Consensus 249 lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l-~nl~~~~~~~~~~i~~~~~l 327 (402)
+|. .+-+..|.....-.+..+++.++..| ..+..-.++....-++..++
T Consensus 104 LLn------------------------------k~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv 153 (460)
T KOG2213|consen 104 LLN------------------------------KASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIV 153 (460)
T ss_pred HHH------------------------------HHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHH
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhc----CCHHHHHHHHHcCCHHHHHHH--hccCCHHHHHHHHHHHH
Q 015687 328 PCLLDLLTQNYKKSIKKEACWTISNITA----GNVNQIQAIIEAGIIGPLVNL--LLNAEFEIKKEAAWAIS 393 (402)
Q Consensus 328 ~~L~~ll~~~~~~~v~~~a~~~L~nl~~----~~~~~~~~l~~~~~i~~L~~l--l~~~~~~v~~~a~~aL~ 393 (402)
..+.+.|.+- ..+--....-.|+++.. ..++..+.+++ .++.+-++ +.-.|++....-+.++.
T Consensus 154 ~eikkal~dV-tgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~--~~e~~a~ldaf~~sD~d~VdRfisCl~ 222 (460)
T KOG2213|consen 154 DEIKKALEDV-TGEEFTLFMDILASLKSLQTKAGEARLQELAE--EQEGLADLDAFNVSDADYVDRFISCLL 222 (460)
T ss_pred HHHHHHHHhc-cHHHHHHHHHHHHhhhcccCCCCHHHHHHHHH--HHhhhhccCcccCCChHHHHHHHHHHH
No 395
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=40.02 E-value=41 Score=20.26 Aligned_cols=12 Identities=33% Similarity=0.476 Sum_probs=8.3
Q ss_pred cCCCCchHHhhh
Q 015687 17 KVAVDAEEGRRR 28 (402)
Q Consensus 17 k~~~~~~~~r~~ 28 (402)
-+..|++|+++|
T Consensus 8 ~pk~DPeE~k~k 19 (51)
T PF15178_consen 8 GPKMDPEEMKRK 19 (51)
T ss_pred CCCCCHHHHHHH
Confidence 345788888774
No 396
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=39.51 E-value=87 Score=28.06 Aligned_cols=54 Identities=26% Similarity=0.254 Sum_probs=41.4
Q ss_pred CChHHHHHHhcCCCchhHHHHHHHHHHHHhcCC-------HHHH-------HHHHHcCCHHHHHHHhcc
Q 015687 325 QALPCLLDLLTQNYKKSIKKEACWTISNITAGN-------VNQI-------QAIIEAGIIGPLVNLLLN 379 (402)
Q Consensus 325 ~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~-------~~~~-------~~l~~~~~i~~L~~ll~~ 379 (402)
..+..++.-|.++ +...|..|+.+|..++.|. .+++ ..+.+.|+++.|+.+|..
T Consensus 60 ~~i~~ll~~L~~~-~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 60 DFIEKLLDQLESS-DSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4566788888888 8889999999999999753 3333 345578999999999853
No 397
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=38.09 E-value=1.7e+02 Score=21.78 Aligned_cols=41 Identities=20% Similarity=0.300 Sum_probs=31.5
Q ss_pred ChhhHHHHHHHHHHhhcC-ChHHHHHHHhCCChHHHHHHhcC
Q 015687 296 SPSVLIPALRTVGNIVTG-DDMQTQCIINHQALPCLLDLLTQ 336 (402)
Q Consensus 296 ~~~v~~~a~~~l~nl~~~-~~~~~~~i~~~~~l~~L~~ll~~ 336 (402)
+..+...++.+|..++.| ..+....+.+.++++.+..+|..
T Consensus 66 ~~~~~~q~~~tL~E~iQGPC~eNQ~~l~~s~~~~~i~~lL~~ 107 (109)
T PF08454_consen 66 NIELIIQCFDTLTEFIQGPCIENQIALANSKFLDIINDLLSK 107 (109)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHhHHHHHHccHHHHHHHHHhh
Confidence 445667788888888888 56677777888888888888753
No 398
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=38.03 E-value=3.1e+02 Score=24.91 Aligned_cols=181 Identities=11% Similarity=0.071 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc--------chhhHHHHHHHHHHHHhhhCCCCCchhhhhchH
Q 015687 172 DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--------HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPAL 243 (402)
Q Consensus 172 ~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~--------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l 243 (402)
.++...+..+.......+.. .. +....+++++..+.. ..++++..-....+..+-..-..........++
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~-~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf 119 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDP-EE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-H-HH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCH-HH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 35556666666666554432 22 344578888874421 125666666666666655543433344446677
Q ss_pred HHHHHhccCC---ChhHHHHHHHHHHHhccCChHHHHHHHH---hCcHHHHHHhcCCCChhhHHHHHHHHHHhhcC----
Q 015687 244 PALERLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIE---AGVCPRLVELLRHPSPSVLIPALRTVGNIVTG---- 313 (402)
Q Consensus 244 ~~L~~lL~~~---~~~v~~~a~~~l~~l~~~~~~~~~~~~~---~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~---- 313 (402)
...+.++..+ -|+.+..-...+..+........-.+=. ..+++.++-.++|++.++...++.++..+...
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~ 199 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKT 199 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777553 4788887777777776542221111100 12456666677999999999999999888753
Q ss_pred ChHHHHHHHhCC---ChHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 015687 314 DDMQTQCIINHQ---ALPCLLDLLTQNYKKSIKKEACWTISNIT 354 (402)
Q Consensus 314 ~~~~~~~i~~~~---~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 354 (402)
+++....+...- ++..+..++.++.....-+.-+.+|.++.
T Consensus 200 ~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 200 NPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLF 243 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 233444444432 33344444433323333334445555544
No 399
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=38.02 E-value=3.4e+02 Score=27.75 Aligned_cols=71 Identities=13% Similarity=0.097 Sum_probs=43.5
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhh-CCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 160 PIFVRLLSSPTDDVREQAVWALGNVA-GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 160 ~~L~~lL~~~~~~v~~~a~~~L~nl~-~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
.+++.-+.+....+...|+.+|.--. .-.|.+|..+...|++..+++.+.++.......-+..+|.+|...
T Consensus 335 ~yiLStlq~~~~~m~trCLSaISla~Kc~~p~FR~~lRa~G~v~~vfkalmDs~~~d~Lsl~tsalMylLs~ 406 (865)
T KOG2152|consen 335 EYILSTLQSALLPMETRCLSAISLADKCVMPDFRMHLRAHGMVDAVFKALMDSHEDDLLSLCTSALMYLLSR 406 (865)
T ss_pred HHHHhhhhhccccHHHHHHhhhhhhhhccChHHHHHHHHcccHHHHHHHHhccccchhhHHHHHHHHHHHhh
Confidence 33333333332333334444443222 235779999999999999999997666666666666666666554
No 400
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=37.45 E-value=1.7e+02 Score=21.72 Aligned_cols=67 Identities=15% Similarity=0.075 Sum_probs=41.9
Q ss_pred CChHHHHHHhcCCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHhh
Q 015687 325 QALPCLLDLLTQNY---KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNAT 396 (402)
Q Consensus 325 ~~l~~L~~ll~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~ 396 (402)
|++..+...+.+.. +..-|+.+..++..+..-...++.. +.|.+...|++ ..++++..|+.+...+.
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~-----a~pQI~acL~saL~~~eL~~~al~~W~~~i 82 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISS-----ALPQIMACLQSALEIPELRSLALRCWHVLI 82 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 56666667676552 2345888888888777632333333 34555555554 46678888888776654
No 401
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=37.29 E-value=2.1e+02 Score=23.97 Aligned_cols=78 Identities=18% Similarity=0.246 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh
Q 015687 298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 377 (402)
Q Consensus 298 ~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 377 (402)
.+...+.+.|..++.++......+.++ ++.+...+... ....--.+.-++..+..++++-...+.+. .+..+++++
T Consensus 76 ~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~-~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll 151 (207)
T PF01365_consen 76 ELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQL-QIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCC-CH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHh-hccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHH
Confidence 567889999999999987766655543 33223322221 11111245556666777666666665544 366666666
Q ss_pred cc
Q 015687 378 LN 379 (402)
Q Consensus 378 ~~ 379 (402)
..
T Consensus 152 ~~ 153 (207)
T PF01365_consen 152 RK 153 (207)
T ss_dssp --
T ss_pred HH
Confidence 54
No 402
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=36.55 E-value=1.6e+02 Score=30.78 Aligned_cols=58 Identities=17% Similarity=0.282 Sum_probs=40.8
Q ss_pred hhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCc------chHHHHhCCchHHHHH
Q 015687 107 INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE------NTRVVIDHGAVPIFVR 164 (402)
Q Consensus 107 ~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~------~~~~~~~~g~i~~L~~ 164 (402)
++.+-+...++.++.++....+++++..|...|+.|++.+.. ....+...+.|..|+.
T Consensus 183 iq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~ 246 (838)
T KOG2073|consen 183 IQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLK 246 (838)
T ss_pred HHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHH
Confidence 344557789999999998776689999999999998876332 3344444445555444
No 403
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=36.51 E-value=3.2e+02 Score=24.56 Aligned_cols=135 Identities=17% Similarity=0.184 Sum_probs=72.3
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc-----chhhHHHHHHHHHHHHhhhCCCCCchhhhh
Q 015687 166 LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-----HAKLSMLRNATWTLSNFCRGKPQPLFEQTR 240 (402)
Q Consensus 166 L~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 240 (402)
+...+...++.|+..|.+=+ ...+ .+|.++..+.. -.+.+.........+.|..+..--....+.
T Consensus 207 ~dEs~~~~r~aAl~sLr~ds----GlhQ------LvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~h 276 (450)
T COG5095 207 LDESDEQTRDAALESLRNDS----GLHQ------LVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLH 276 (450)
T ss_pred HHHHHHHHHHHHHHHhccCc----cHHH------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHH
Confidence 44456777777777766432 2211 35555555532 134556666677777777665333345566
Q ss_pred chHHHHHHhc-----cCCCh-----hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH-hcCCCC-hhhHHHHHHHHH
Q 015687 241 PALPALERLI-----HSNDD-----EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLRHPS-PSVLIPALRTVG 308 (402)
Q Consensus 241 ~~l~~L~~lL-----~~~~~-----~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~-~L~~~~-~~v~~~a~~~l~ 308 (402)
.++|.++.++ .+.+. .++.-|+..+.+.++.-..... -+...+...+.. +|..+. .....-|+.+++
T Consensus 277 qlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~Yk-tLkPRvtrTllKafLD~~k~~sT~YGalkgls 355 (450)
T COG5095 277 QLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYK-TLKPRVTRTLLKAFLDREKTESTQYGALKGLS 355 (450)
T ss_pred HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhh-hhchHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 7777766665 22222 2677777888887765443322 222333343433 333332 344555666666
Q ss_pred Hhh
Q 015687 309 NIV 311 (402)
Q Consensus 309 nl~ 311 (402)
-+.
T Consensus 356 ~l~ 358 (450)
T COG5095 356 ILS 358 (450)
T ss_pred hhc
Confidence 554
No 404
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=36.05 E-value=2.1e+02 Score=26.69 Aligned_cols=81 Identities=15% Similarity=0.096 Sum_probs=60.8
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC-CCCc
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPL 235 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~ 235 (402)
.+..+.+=|++.++.|.-+|+..+..++.++ ..+|..+....+...|..++....++.+......++.+.+... ..+.
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp~ 125 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDPS 125 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCcc
Confidence 5777778888899999999999999988654 3467777777888888888855677888888777777777654 3333
Q ss_pred hhh
Q 015687 236 FEQ 238 (402)
Q Consensus 236 ~~~ 238 (402)
+..
T Consensus 126 lsL 128 (462)
T KOG2199|consen 126 LSL 128 (462)
T ss_pred hhH
Confidence 333
No 405
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=35.62 E-value=1.9e+02 Score=22.86 Aligned_cols=123 Identities=17% Similarity=0.181 Sum_probs=72.6
Q ss_pred CchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCc---hhhhhchHHHHHHh-ccCCChhHHHHHHH
Q 015687 188 SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL---FEQTRPALPALERL-IHSNDDEVLTDACW 263 (402)
Q Consensus 188 ~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~~~l~~L~~l-L~~~~~~v~~~a~~ 263 (402)
++.+=+.+.+...+..+++++.+.....+......+++-|..+-..+. .....+.+..++.. +.-+|+++...=..
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 344567788888999999999765677777777777777776642222 22234555544433 33357777776666
Q ss_pred HHHHhccC-ChHHHHHHHHh--C---cHHHHHHhcCCCChhhHHHHHHHHHHh
Q 015687 264 ALSYLSDG-TNDKIQAVIEA--G---VCPRLVELLRHPSPSVLIPALRTVGNI 310 (402)
Q Consensus 264 ~l~~l~~~-~~~~~~~~~~~--~---~i~~L~~~L~~~~~~v~~~a~~~l~nl 310 (402)
.|-.++-. +.+.++.+... + +...-+++..+++.-+|.++-.++-|+
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 66666522 22223333332 3 334445566777776666655544443
No 406
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=35.58 E-value=1.9e+02 Score=21.68 Aligned_cols=70 Identities=20% Similarity=0.216 Sum_probs=45.3
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 188 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~ 188 (402)
++|.+.+.|..+..++.+..+.-+++.++...+ ....+++ ..+..++.-...... ...++-+|..++...
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-L~~~~l~-~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-LSDEVLN-ALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-CcHHHHH-HHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 578888889844448999999999999998533 3333332 234444443333222 478888898888544
No 407
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=35.11 E-value=1.9e+02 Score=21.42 Aligned_cols=87 Identities=10% Similarity=0.098 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh
Q 015687 212 AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 291 (402)
Q Consensus 212 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~ 291 (402)
..+.+..-..|++.+.... ..++..+.+.+....+.-+-.++..+-.++.+............+.+.+...
T Consensus 17 S~~~I~~lt~~a~~~~~~a---------~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~ 87 (114)
T cd03562 17 SQPSIQTLTKLAIENRKHA---------KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDA 87 (114)
T ss_pred cHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 4555666667777665322 4555666666666666666667776666665443333333333334444444
Q ss_pred cCCCChhhHHHHHHHH
Q 015687 292 LRHPSPSVLIPALRTV 307 (402)
Q Consensus 292 L~~~~~~v~~~a~~~l 307 (402)
....++.++....+.+
T Consensus 88 ~~~~~~~~r~kl~rl~ 103 (114)
T cd03562 88 YEKVDEKTRKKLERLL 103 (114)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 4444555554444333
No 408
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=35.11 E-value=1.6e+02 Score=23.95 Aligned_cols=77 Identities=13% Similarity=0.074 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHh
Q 015687 255 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL 334 (402)
Q Consensus 255 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll 334 (402)
-++|..|..++..+.+.....+. + ..+++.+..-|.+ +.+++..+...+.+++...+.....-++ .+++.+-..|
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~-~--~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld-~l~~~l~~~L 115 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRID-I--SEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLD-SLVEPLRKTL 115 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS--H--HHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-H--HHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHh
Confidence 57888998888888654333322 1 1236677777877 8899999999999999887755443333 6788888887
Q ss_pred cC
Q 015687 335 TQ 336 (402)
Q Consensus 335 ~~ 336 (402)
+.
T Consensus 116 ~~ 117 (169)
T PF08623_consen 116 SK 117 (169)
T ss_dssp H-
T ss_pred hc
Confidence 53
No 409
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.61 E-value=4.2e+02 Score=29.44 Aligned_cols=95 Identities=13% Similarity=0.071 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhC----C---CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCCh
Q 015687 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS----S---PTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 201 (402)
Q Consensus 129 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~----~---~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i 201 (402)
.+++.....++.++.....+.. +. | =+.+.++++ . ....+.+.+..+|.-++.|.-.--..-.-.+.+
T Consensus 856 ~evr~~sl~~l~silet~ge~l---l~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~li 930 (1610)
T KOG1848|consen 856 VEVRISSLEALVSILETVGEHL---LH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLI 930 (1610)
T ss_pred ceeeHHHHHHHHHHHhccchhh---cc-c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHH
Confidence 5677777788888776433322 11 1 222333322 2 356677788888887776532111111223467
Q ss_pred HHHHHHhccchhhHHHHHHHHHHHHhh
Q 015687 202 MPLLAQFNEHAKLSMLRNATWTLSNFC 228 (402)
Q Consensus 202 ~~L~~~l~~~~~~~~~~~a~~~L~~l~ 228 (402)
+.++..-.+..|..+--.|...+++++
T Consensus 931 dtl~~fs~QktdlNISltAi~lfWtvs 957 (1610)
T KOG1848|consen 931 DTLLVFSRQKTDLNISLTAIGLFWTVS 957 (1610)
T ss_pred HHHHHHHhhhccccccHHHHHHHHHHH
Confidence 777777766666555555554444443
No 410
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=34.38 E-value=4.5e+02 Score=25.67 Aligned_cols=251 Identities=15% Similarity=0.135 Sum_probs=0.0
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCC----------CcchHHHHhCCchHHHHHhh--------CCCCHHHHHH
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGT----------SENTRVVIDHGAVPIFVRLL--------SSPTDDVREQ 176 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~----------~~~~~~~~~~g~i~~L~~lL--------~~~~~~v~~~ 176 (402)
+|..+.++++.+....+|-.|+|.|+.+--.+ |..-..+-+...|...+.++ ++-.+.....
T Consensus 98 vir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvkv 177 (589)
T PF11229_consen 98 VIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVKV 177 (589)
T ss_pred HHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHHH
Q ss_pred HHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChh
Q 015687 177 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDE 256 (402)
Q Consensus 177 a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 256 (402)
++.-+.......+..----.. ++.+|+++ +...+++..+...-..=+..........-.-+.|.++.-|......
T Consensus 178 vl~~ia~vgeS~qyPPVNWaa--lLsPLMRl---nfGeEvq~lCLeiAvtQaqSSqsAa~fLg~WlsPpli~sLs~~tk~ 252 (589)
T PF11229_consen 178 VLKPIATVGESYQYPPVNWAA--LLSPLMRL---NFGEEVQQLCLEIAVTQAQSSQSAAMFLGSWLSPPLIHSLSVNTKK 252 (589)
T ss_pred HHHHhhhcCCCCCCCCccHHH--HhhHHHhc---cccHHHHHHHHHHHHHhccccccHHHHHHhhcCcchhhhhhHHHHH
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHh--CCChHHHHHHh
Q 015687 257 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN--HQALPCLLDLL 334 (402)
Q Consensus 257 v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~--~~~l~~L~~ll 334 (402)
.....+.....-. +++.++.+++.-.+..+-..-...++++...++..+.. +...+.-.+.... ......+..++
T Consensus 253 ~L~~Sl~~wmkhV--sedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsq-AMKlP~P~~h~Ws~Lc~ttekIF~lL 329 (589)
T PF11229_consen 253 YLFESLSLWMKHV--SEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQ-AMKLPSPAQHCWSLLCETTEKIFDLL 329 (589)
T ss_pred HHHHHHHHHHhhC--CHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH-HhcCCChhhHHHHHHHHHHHHHHHhC
Q ss_pred ----cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHH
Q 015687 335 ----TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLV 374 (402)
Q Consensus 335 ----~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~ 374 (402)
+.. +-+.-...+.||+.++...-+.+..+-+.++-...+
T Consensus 330 Pn~i~~~-eveLYi~vAkCLSEMtd~eidrItqitK~nieKa~F 372 (589)
T PF11229_consen 330 PNKIQRN-EVELYIGVAKCLSEMTDTEIDRITQITKDNIEKAIF 372 (589)
T ss_pred cccccHH-HHHHHHHHHHHHhhcCHHHHHHHHHhhhccchhhhh
No 411
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=34.23 E-value=4.3e+02 Score=25.39 Aligned_cols=109 Identities=14% Similarity=0.121 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhhCCCchhhHHHHhcCChH-HHHHHhccchhhHHHHHHHHHHHHhhhCCCCC-chhhhhchHHHHHH
Q 015687 171 DDVREQAVWALGNVAGDSPKCRDLVLSNGALM-PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALER 248 (402)
Q Consensus 171 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~-~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~ 248 (402)
...|-.|+.+||.++..-+.. .... ... .|+..| .+....-+..++.++...+...... .......+.+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~--~~~~--~~~~~L~~~L-~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPES--SLQE--IFQPLLLPYL-NSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccc--hHHH--HHHHHHHHHh-cchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 345778899999988653221 1100 233 467777 6666666667777777777664211 11113455667777
Q ss_pred hccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 015687 249 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 284 (402)
Q Consensus 249 lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 284 (402)
+|..+.+..-.+....+..+-.........+.+.|.
T Consensus 176 ~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~ 211 (441)
T PF12054_consen 176 ILENPEPPYYDELVPSLKRLRTECQQLLATFRDVGK 211 (441)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 777554444444444445554444455555666666
No 412
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=34.14 E-value=77 Score=26.60 Aligned_cols=79 Identities=11% Similarity=0.117 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhc
Q 015687 171 DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 250 (402)
Q Consensus 171 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL 250 (402)
.++...+...|..++.+++.++..+.+ .++.++..+.... ...-..+..++..+..+++..........+..++.++
T Consensus 75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~--~~~~l~~~~~~~~-~~~~~~~~d~l~~i~~dN~~L~~~i~e~~I~~~i~ll 151 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGNRENQKYLFK--HLDFLISIFMQLQ-IGYGLGALDVLTEIFRDNPELCESISEEHIEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHH--HHH-----HHCCC-H-TTHHHHHHHHHHHTT--------------------
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHH--HHhHHHHHHHHhh-ccCCchHHHHHHHHHHCcHHHHHHhhHHHHHHHHHHH
Confidence 467788999999999998888777665 2443333331111 0011234556666666654444444445566777777
Q ss_pred cC
Q 015687 251 HS 252 (402)
Q Consensus 251 ~~ 252 (402)
..
T Consensus 152 ~~ 153 (207)
T PF01365_consen 152 RK 153 (207)
T ss_dssp --
T ss_pred HH
Confidence 55
No 413
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=33.97 E-value=3.3e+02 Score=23.99 Aligned_cols=60 Identities=15% Similarity=0.102 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHHhhcCCh----------------HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 015687 297 PSVLIPALRTVGNIVTGDD----------------MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (402)
Q Consensus 297 ~~v~~~a~~~l~nl~~~~~----------------~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 356 (402)
..+.+.++..+.|+..-++ .....+.+.|++..|+.+.++...........-++..+..+
T Consensus 134 ~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~ 209 (266)
T PF04821_consen 134 NLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKG 209 (266)
T ss_pred HHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcC
Confidence 4566677777777765422 22344557799999999998763333333555556666654
No 414
>PF11894 DUF3414: Protein of unknown function (DUF3414); InterPro: IPR021827 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 764 to 2011 amino acids in length. This protein has a conserved LLG sequence motif.
Probab=33.59 E-value=7.5e+02 Score=28.76 Aligned_cols=68 Identities=16% Similarity=0.268 Sum_probs=51.1
Q ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHhC---CChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 015687 297 PSVLIPALRTVGNIVTGDDMQTQCIINH---QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 364 (402)
Q Consensus 297 ~~v~~~a~~~l~nl~~~~~~~~~~i~~~---~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 364 (402)
......-++.++.++..++..+..+.+. ..++.|..++..+-.+.+|.....+|+.++..+++....+
T Consensus 578 ~~~L~a~L~Li~~V~~~s~~ar~~l~~~~~~~~~~~L~~L~~~~vp~~Lkaai~~~Laal~~~~~~~~~~i 648 (1691)
T PF11894_consen 578 VEMLSAYLRLISSVVRNSEQARSALLENPNWNPIDILFGLLSCPVPPSLKAAIFNALAALAAKSPEIANQI 648 (1691)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHhCCCCchHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3455778889999999877666666654 4699999999988566899999999999965445544443
No 415
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=33.01 E-value=3.2e+02 Score=23.58 Aligned_cols=83 Identities=19% Similarity=0.288 Sum_probs=52.5
Q ss_pred CcHHHHHHhcCCCChhhHHHHHHHHHHhhc----CCh--H---------------------HHHHHH--hCCChHHHHHH
Q 015687 283 GVCPRLVELLRHPSPSVLIPALRTVGNIVT----GDD--M---------------------QTQCII--NHQALPCLLDL 333 (402)
Q Consensus 283 ~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~----~~~--~---------------------~~~~i~--~~~~l~~L~~l 333 (402)
.+-..++.++.+.++.++..|+..+..++- +.. . ....+- ..+.+..|+..
T Consensus 43 ~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~ 122 (239)
T PF11935_consen 43 ELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDV 122 (239)
T ss_dssp HHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 344567777788888888888888877652 000 0 001111 23678899999
Q ss_pred hcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHH
Q 015687 334 LTQNY-KKSIKKEACWTISNITAGNVNQIQAII 365 (402)
Q Consensus 334 l~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~ 365 (402)
+.++. ++.+-..+..+|++|+...|.....++
T Consensus 123 l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il 155 (239)
T PF11935_consen 123 LQSPHISSPLLTAIINSLSNIAKQRPQFMSRIL 155 (239)
T ss_dssp HC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred HhhcccchHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 98874 467777888889999886666555543
No 416
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=32.99 E-value=90 Score=27.97 Aligned_cols=55 Identities=20% Similarity=0.270 Sum_probs=42.5
Q ss_pred HhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-------H-------HHHHHHhCCChHHHHHHhc
Q 015687 281 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-------M-------QTQCIINHQALPCLLDLLT 335 (402)
Q Consensus 281 ~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~-------~-------~~~~i~~~~~l~~L~~ll~ 335 (402)
+...+..++.-|.+.+...+..|+++|.-++.|.- + +...+.+.|+++.|..+|.
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34567888899988888899999999999987642 2 2334557899999999884
No 417
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=32.42 E-value=2.5e+02 Score=22.03 Aligned_cols=81 Identities=19% Similarity=0.184 Sum_probs=46.5
Q ss_pred CchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCch
Q 015687 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236 (402)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 236 (402)
..-..+..+|.+++++++..|+.||...- .+ .+.. .=+.|-+++. +... +.....+. +.........
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~k--~~----~l~p--Y~d~L~~Lld---d~~f-rdeL~~f~-~~~~~~~I~~ 83 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTWK--DP----YLTP--YKDNLENLLD---DKTF-RDELTTFN-LSDESSVIEE 83 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--cH----HHHh--HHHHHHHHcC---cchH-HHHHHhhc-ccCCcCCCCH
Confidence 45567788999999999999999998742 11 1111 1234455552 2222 22222221 2222223444
Q ss_pred hhhhchHHHHHHhc
Q 015687 237 EQTRPALPALERLI 250 (402)
Q Consensus 237 ~~~~~~l~~L~~lL 250 (402)
.....++|.++.+|
T Consensus 84 ehR~~l~pvvlRIL 97 (141)
T PF07539_consen 84 EHRPELMPVVLRIL 97 (141)
T ss_pred HHHhHHHHHHHHHH
Confidence 55578899998887
No 418
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=32.07 E-value=3.8e+02 Score=24.17 Aligned_cols=128 Identities=13% Similarity=0.167 Sum_probs=83.1
Q ss_pred hHHHHhcCChHHHHHHhcc----------------------chhhHHHHHHHHHHHHhhhCCCCC---------------
Q 015687 192 RDLVLSNGALMPLLAQFNE----------------------HAKLSMLRNATWTLSNFCRGKPQP--------------- 234 (402)
Q Consensus 192 ~~~~~~~g~i~~L~~~l~~----------------------~~~~~~~~~a~~~L~~l~~~~~~~--------------- 234 (402)
+..+.+.|.++.|-+++.. +++..++...+..+.++|...+..
T Consensus 2 q~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF12463_consen 2 QTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESE 81 (303)
T ss_pred hHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccc
Confidence 3456677777777766521 123346777778888888732111
Q ss_pred -------chhhhhchHHHHHHhccCC--ChhHHHHHHHHHHHhccCChH--HHHHHHHhCcHHHHHHhcCCC---ChhhH
Q 015687 235 -------LFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTND--KIQAVIEAGVCPRLVELLRHP---SPSVL 300 (402)
Q Consensus 235 -------~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l~~l~~~~~~--~~~~~~~~~~i~~L~~~L~~~---~~~v~ 300 (402)
......|.+..+++.+..+ +...+-..+.++-.+..+.+. ....+.+.|+++.++.-+-++ +..+.
T Consensus 82 ~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~ 161 (303)
T PF12463_consen 82 LNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVL 161 (303)
T ss_pred ccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHH
Confidence 0111246666677766443 556677777788777766554 223577889999999977544 24588
Q ss_pred HHHHHHHHHhhcCChHHHH
Q 015687 301 IPALRTVGNIVTGDDMQTQ 319 (402)
Q Consensus 301 ~~a~~~l~nl~~~~~~~~~ 319 (402)
..+...+|-+..++.....
T Consensus 162 Q~~FDLLGELiK~n~~~f~ 180 (303)
T PF12463_consen 162 QSNFDLLGELIKFNRDAFQ 180 (303)
T ss_pred HHHHHHHHHHHCCCHHHHH
Confidence 8999999999998875444
No 419
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.34 E-value=4.2e+02 Score=28.46 Aligned_cols=130 Identities=11% Similarity=0.013 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh-hHHHHhcCChHHHHHH
Q 015687 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC-RDLVLSNGALMPLLAQ 207 (402)
Q Consensus 129 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-~~~~~~~g~i~~L~~~ 207 (402)
+++|..++.-|+--...-| ..+++...+.++-..|++.+.+||..++.+|-.|....... .-...-..+=..++.+
T Consensus 301 ~~IRaiCiqeLgiWi~~yP---~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeM 377 (1048)
T KOG2011|consen 301 PDIRAICIQELGIWIKSYP---EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEM 377 (1048)
T ss_pred hHHHHHHHHHHHHHHHhcc---HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 7899888888887665433 45677778899999999999999999999999998663211 0011112234455555
Q ss_pred hccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHH
Q 015687 208 FNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALS 266 (402)
Q Consensus 208 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~ 266 (402)
....-+..++......+..+....- ....-+..+.+++.+.++.++..+...+.
T Consensus 378 adrd~~~~Vrav~L~~~~~~~~~g~-----L~d~di~~Vy~Li~d~~r~~~~aa~~fl~ 431 (1048)
T KOG2011|consen 378 ADRDRNVSVRAVGLVLCLLLSSSGL-----LSDKDILIVYSLIYDSNRRVAVAAGEFLY 431 (1048)
T ss_pred HhhhcchhHHHHHHHHHHHHhcccc-----cChhHHHHHHHHHhccCcchHHHHHHHHH
Confidence 5344455555555444433332210 01222344556666677776666655554
No 420
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.33 E-value=26 Score=24.99 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=23.4
Q ss_pred HHHhhhccC-CCCchHHhhhhHHHHHHHHH
Q 015687 10 EVRRSKYKV-AVDAEEGRRRREDNMVEIRK 38 (402)
Q Consensus 10 ~~~~~~~k~-~~~~~~~r~~r~~~~~~lRk 38 (402)
.+|-.-|++ -.|+.|.||||-+.+...++
T Consensus 68 gDRVEIyRPLlaDPKE~RR~Ra~~~~~~~~ 97 (99)
T COG2914 68 GDRVEIYRPLLADPKEARRKRAERAAAAKK 97 (99)
T ss_pred CCEEEEecccccChHHHHHHHHHHHHHhhc
Confidence 477888999 88999999999887765543
No 421
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=31.14 E-value=2.8e+02 Score=22.23 Aligned_cols=79 Identities=13% Similarity=0.175 Sum_probs=52.6
Q ss_pred HHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHH-HhcCCC-chhHHHHHHHHHHHHh
Q 015687 277 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD-LLTQNY-KKSIKKEACWTISNIT 354 (402)
Q Consensus 277 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~-ll~~~~-~~~v~~~a~~~L~nl~ 354 (402)
..++...+++.+...+.+++..+...+++++..+...-....+.-++ -+++.++. ++.++. ....|..+.-++..++
T Consensus 67 ~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele-~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 67 INLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE-VFLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 34566677888888887777899999999999998543222221111 23455555 666552 2356777888999998
Q ss_pred cC
Q 015687 355 AG 356 (402)
Q Consensus 355 ~~ 356 (402)
..
T Consensus 146 ~~ 147 (168)
T PF12783_consen 146 KD 147 (168)
T ss_pred hC
Confidence 75
No 422
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=30.68 E-value=5e+02 Score=25.88 Aligned_cols=24 Identities=13% Similarity=0.035 Sum_probs=14.7
Q ss_pred HhccCCChhHHHHHHHHHHHhccC
Q 015687 248 RLIHSNDDEVLTDACWALSYLSDG 271 (402)
Q Consensus 248 ~lL~~~~~~v~~~a~~~l~~l~~~ 271 (402)
.+|.+.+.-+...|+.+.++++..
T Consensus 530 ~LL~d~~Wll~q~ALeAF~~FAe~ 553 (559)
T PF14868_consen 530 MLLADRHWLLHQHALEAFGQFAER 553 (559)
T ss_pred HHhcCCcHHHHHHHHHHHHHHhcc
Confidence 344556666666677776666643
No 423
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=30.65 E-value=2e+02 Score=20.49 Aligned_cols=57 Identities=16% Similarity=0.046 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCC--ChhHHHHHHHHHHHh
Q 015687 212 AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYL 268 (402)
Q Consensus 212 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l~~l 268 (402)
.+-.++..|+..+..+|+............+...+.+.+.++ ......-|+..|..+
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 467899999999999998864443344456777788877654 455677888888777
No 424
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=30.54 E-value=18 Score=30.89 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHhhhHHHHhhhh
Q 015687 28 RREDNMVEIRKNKREESLLKKRR 50 (402)
Q Consensus 28 ~r~~~~~~lRk~~r~~~~~~kr~ 50 (402)
-|+.+..++|+.||++.+..+|.
T Consensus 11 ~r~~~~~~~~~~k~~~~~~~~r~ 33 (225)
T cd01882 11 ARQFQRTADIEEKKLHVPVVDRT 33 (225)
T ss_pred HHHHHHHHHhhhccccceeeccc
Confidence 45578889999999999999996
No 425
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=28.06 E-value=6.2e+02 Score=25.34 Aligned_cols=98 Identities=14% Similarity=0.048 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCch--hhhhchHHH
Q 015687 168 SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF--EQTRPALPA 245 (402)
Q Consensus 168 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~l~~ 245 (402)
+-++.+|-.+...|+--++.-|. .+.+-.++.+.-..| .+.+..++.....++..|+...|.... .....+-..
T Consensus 286 Dv~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~L-SDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~r 361 (740)
T COG5537 286 DVDDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSL-SDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDR 361 (740)
T ss_pred chhHHHHHHHHHHHHHHHhcchH---HHHhhhccccccccc-ccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 35677787888887776666553 444444566666666 777899999999999999999876652 233556667
Q ss_pred HHHhccCCChhHHHHHHHHHHHhc
Q 015687 246 LERLIHSNDDEVLTDACWALSYLS 269 (402)
Q Consensus 246 L~~lL~~~~~~v~~~a~~~l~~l~ 269 (402)
+++++..+..-|+..+...+.++.
T Consensus 362 ILE~~r~D~d~VRi~sik~l~~lr 385 (740)
T COG5537 362 ILEFLRTDSDCVRICSIKSLCYLR 385 (740)
T ss_pred HHHHHhhccchhhHHHHHHHHHHH
Confidence 777776664448888888777764
No 426
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=27.99 E-value=2.7e+02 Score=21.18 Aligned_cols=55 Identities=15% Similarity=0.203 Sum_probs=37.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 015687 260 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 319 (402)
Q Consensus 260 ~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~ 319 (402)
....-|+.++..+..... .+++.|..-|.+.++.|+..++++|-.+|....+...
T Consensus 20 y~~~Eia~~t~~s~~~~~-----ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~ 74 (122)
T cd03572 20 YLYEEIAKLTRKSVGSCQ-----ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFK 74 (122)
T ss_pred HHHHHHHHHHHcCHHHHH-----HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHH
Confidence 333445555555433322 3467788888888999999999999999986654433
No 427
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=27.77 E-value=3e+02 Score=22.52 Aligned_cols=67 Identities=21% Similarity=0.245 Sum_probs=48.7
Q ss_pred cchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHH
Q 015687 210 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 281 (402)
Q Consensus 210 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 281 (402)
.+++.=+++.+..++...... ......+++.+-.++.+++..|+..+.|+|..++...++....+++
T Consensus 115 ~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~ 181 (197)
T cd06561 115 KSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLE 181 (197)
T ss_pred hCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 777787888888777776655 1223556677777777788899999999999999776655444443
No 428
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=27.31 E-value=6.6e+02 Score=25.35 Aligned_cols=26 Identities=4% Similarity=0.133 Sum_probs=15.1
Q ss_pred HHhcCCCchhHHHHHHHHHHHHhcCC
Q 015687 332 DLLTQNYKKSIKKEACWTISNITAGN 357 (402)
Q Consensus 332 ~ll~~~~~~~v~~~a~~~L~nl~~~~ 357 (402)
+++-.+.-..+|-.++..|.+|+..+
T Consensus 434 rLipT~qy~PLRlhcir~Li~Ls~ss 459 (661)
T KOG2256|consen 434 RLIPTPQYYPLRLHCIRSLISLSRSS 459 (661)
T ss_pred hhcCcccchhHHHHHHHHHHHHHhhc
Confidence 33333323456777777777777643
No 429
>KOG2312 consensus Predicted transcriptional regulator, contains ARID domain [Transcription]
Probab=27.05 E-value=16 Score=36.10 Aligned_cols=123 Identities=20% Similarity=0.154 Sum_probs=76.1
Q ss_pred cCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCC--CchhhHHHHhcCCh
Q 015687 124 SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD--SPKCRDLVLSNGAL 201 (402)
Q Consensus 124 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~--~~~~~~~~~~~g~i 201 (402)
.+..|..++..|+...+|++.-+...... ...+-.+.+-+.+.+..+.-.++.+|.++|+. ++...-.++.....
T Consensus 44 a~~~ws~~~Vqal~s~~nlaqpt~~e~S~---~~~L~t~t~Gi~S~drflimr~lEIl~~lcgrEgN~qvIc~~l~~d~y 120 (847)
T KOG2312|consen 44 AQPQWSQMQVQALQSNANLAQPTSGESSL---IKQLLTPTRGISSPDRFLIMRALEILPPLCGREGNPQVICQVLSNDAY 120 (847)
T ss_pred cccccchhhhHhhhhhcccCCcchhhhhH---HHHHhhhccCCCCCCceeEeeccccCcccccCCCCceeehhhhchHHH
Confidence 34456789999999999999832222111 12345555566777888888899999999954 33333344455555
Q ss_pred HHHHHHhccchhhHHHHHHHHHHHHhhhCC--CCCchhhhhchHHHHHHhc
Q 015687 202 MPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLI 250 (402)
Q Consensus 202 ~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~L~~lL 250 (402)
..++..+ .-.|.-+.-....+|..|+... +...+..+...+..|+.+.
T Consensus 121 ~~iv~~l-tl~Dvllvi~Tle~LyalsemGdvac~~Is~v~klidqLVsl~ 170 (847)
T KOG2312|consen 121 GFIVQGL-TLADVLLVIQTLEQLYALSEMGDVACVPISNVQKLIDQLVSLS 170 (847)
T ss_pred HHHHhcc-chhHeehhhhhhhHHhcccccCCccchhhhhhhhhhhhhhccc
Confidence 5566555 4456666666666677666554 2333344466666666654
No 430
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=26.70 E-value=4.8e+02 Score=23.61 Aligned_cols=183 Identities=10% Similarity=0.005 Sum_probs=95.4
Q ss_pred HHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCch-hhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 015687 202 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF-EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 280 (402)
Q Consensus 202 ~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 280 (402)
..|.++|...-...|...|..+...+...-..... ....-..|-|.+++......|+...+..+-...-.-.... ...
T Consensus 57 krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L-~p~ 135 (307)
T PF04118_consen 57 KRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPAL-RPC 135 (307)
T ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHH-HHH
Confidence 34555554444455666666666655554311111 1112334556666677777787777777754332211121 223
Q ss_pred HhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHH-HHHHHhcC---
Q 015687 281 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW-TISNITAG--- 356 (402)
Q Consensus 281 ~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~-~L~nl~~~--- 356 (402)
-.|++..+++-|.+++.++...+...+-.+...-... -+...+...+-+ +|.+|..|.. +...+...
T Consensus 136 l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~-------~F~~~lwl~ii~--sp~~Rl~al~~l~~~l~~~~~~ 206 (307)
T PF04118_consen 136 LKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK-------YFWQCLWLCIIT--SPSRRLGALNYLLRRLPKFQND 206 (307)
T ss_pred HHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh-------HHHHHHHHHHhc--CcchhHHHHHHHHHhCCccccc
Confidence 3467777777788788888888888887776532211 122233333332 3455555543 33333321
Q ss_pred ----CHHHHHHHHH--cC-CHHHHHHHhccCCHHHHHHHHHHHHH
Q 015687 357 ----NVNQIQAIIE--AG-IIGPLVNLLLNAEFEIKKEAAWAISN 394 (402)
Q Consensus 357 ----~~~~~~~l~~--~~-~i~~L~~ll~~~~~~v~~~a~~aL~n 394 (402)
..+....++. .| ++..++..+++++.-|++.+...|.+
T Consensus 207 ~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 207 ELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred ccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 1222233332 22 35666666676666677766666544
No 431
>PLN03205 ATR interacting protein; Provisional
Probab=26.20 E-value=2.2e+02 Score=26.64 Aligned_cols=113 Identities=13% Similarity=0.189 Sum_probs=68.4
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHhhc---CChHHHHHHHhCCChH---HHHHHhcCCCchhHHHHHHHHHHHHhcC--
Q 015687 285 CPRLVELLRHPSPSVLIPALRTVGNIVT---GDDMQTQCIINHQALP---CLLDLLTQNYKKSIKKEACWTISNITAG-- 356 (402)
Q Consensus 285 i~~L~~~L~~~~~~v~~~a~~~l~nl~~---~~~~~~~~i~~~~~l~---~L~~ll~~~~~~~v~~~a~~~L~nl~~~-- 356 (402)
++.|+.+-.-++..+...+++.+..+.. ++......-.+.+++. .+.++-.......||-+|..+.--|...
T Consensus 325 lEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmssn 404 (652)
T PLN03205 325 VEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMSTD 404 (652)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhccc
Confidence 4566677667777777788887766653 2332233333444332 3333322222667888888776666543
Q ss_pred CHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHhhc
Q 015687 357 NVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATS 397 (402)
Q Consensus 357 ~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~ 397 (402)
..-.+..+...-+++.+-++|+. ....||++|+..|.-+..
T Consensus 405 a~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN 446 (652)
T PLN03205 405 AYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN 446 (652)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc
Confidence 22334445556688889999875 457899999887765543
No 432
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.15 E-value=6.5e+02 Score=28.07 Aligned_cols=118 Identities=15% Similarity=0.165 Sum_probs=69.1
Q ss_pred CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH----HHHHhcCCCChhhHHHHHHHH
Q 015687 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP----RLVELLRHPSPSVLIPALRTV 307 (402)
Q Consensus 232 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~----~L~~~L~~~~~~v~~~a~~~l 307 (402)
+.+.......-+..+++-|...|+.....|+..++.+....+.... .|+++ ...++..+.+..||...-.++
T Consensus 32 ~~~~~~~~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~----~~il~~w~~i~~kl~~d~~~~VR~~t~~v~ 107 (1312)
T KOG0803|consen 32 PDPFVLELDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEEL----KGILPEWLVIYAKLIIDEDRTVRLLTHDVF 107 (1312)
T ss_pred CChHHhccCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHH----hhhHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence 3333333455666777888888999999999999999866543222 12333 333445678899999999999
Q ss_pred HHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 308 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 308 ~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
..+.+.-.......+. .++|...-.-.+. ...+-..|--.+-+...
T Consensus 108 s~l~t~lkk~lsp~LK-~li~~wl~~~~d~-~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 108 SKLLTKLKKKLSPFLK-SLIPPWLGGQFDL-DYPVSEAAKASFKDGFA 153 (1312)
T ss_pred HHHHHHHHHHhhHHHH-hhhhhhhheeccc-chHHHHHHHHHHHhhcC
Confidence 9998754433232222 2223322222233 34444444444444433
No 433
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=26.13 E-value=80 Score=30.38 Aligned_cols=69 Identities=20% Similarity=0.249 Sum_probs=48.2
Q ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 015687 327 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 327 l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 396 (402)
...+-.+..+. ++.++.+|..+++|++-+.......+-+..+-..+++++..+.+++-+.|..|+.-+.
T Consensus 330 ~~~lk~~~a~~-n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 330 LKALKSLCAHK-NPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILG 398 (763)
T ss_pred HHHHHHHhccc-ChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhh
Confidence 33444455566 8999999999999998764333222223445567778888888999888888887654
No 434
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=26.06 E-value=4.9e+02 Score=25.90 Aligned_cols=75 Identities=15% Similarity=0.056 Sum_probs=47.8
Q ss_pred CChHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 325 QALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 325 ~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
+++-.+-.++.+.....+|-.++..++.+.. ..++..+.-+-..+....-.+|.+.+.-+...|+.|.+.++.+.
T Consensus 479 qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T 554 (559)
T PF14868_consen 479 QVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERT 554 (559)
T ss_pred HHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccC
Confidence 3444566666554355688888888888876 22332232111113333444567889999999999999999864
No 435
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=25.82 E-value=4e+02 Score=22.38 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 015687 286 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 365 (402)
Q Consensus 286 ~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 365 (402)
+.+.....+++.-.+..|+-+.-......+...- ...+..++.++ +.-|++...|+|..++..+++.+...+
T Consensus 118 ~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~~~~l-------~~~~~~~~~d~-e~fI~KAiGW~LRe~~k~d~~~V~~fl 189 (208)
T cd07064 118 PVMDEWSTDENFWLRRTAILHQLKYKEKTDTDLL-------FEIILANLGSK-EFFIRKAIGWALREYSKTNPDWVRDFV 189 (208)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHccCHHHH-------HHHHHHhCCCh-HHHHHHHHHHHHHHHhccCHHHHHHHH
Q ss_pred HcC
Q 015687 366 EAG 368 (402)
Q Consensus 366 ~~~ 368 (402)
+..
T Consensus 190 ~~~ 192 (208)
T cd07064 190 AAH 192 (208)
T ss_pred HHh
No 436
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=24.81 E-value=6e+02 Score=24.05 Aligned_cols=68 Identities=22% Similarity=0.233 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHhhcC--CCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHH
Q 015687 128 FPQLQFEAAWALTNIASG--TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV 195 (402)
Q Consensus 128 ~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 195 (402)
++.+|..--..|.-+.+. ++......++...+-.|+.++.++|+.-|+..-.+|.++.+.-...|..+
T Consensus 146 wphLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~fi 215 (457)
T KOG2085|consen 146 WPHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFI 215 (457)
T ss_pred chHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 456665555555555542 13344567777889999999999999999999999998876544444443
No 437
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.08 E-value=7e+02 Score=24.60 Aligned_cols=263 Identities=13% Similarity=0.058 Sum_probs=128.3
Q ss_pred HHHHHHhhcCCC---HHHHHHHHHHHHHHhccCCCCchhHHhhc-CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCC--
Q 015687 73 LPAMVAGVWSDD---RNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-- 146 (402)
Q Consensus 73 i~~l~~~l~s~~---~~~~~~a~~~l~~l~s~~~~~~~~~~~~~-g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~-- 146 (402)
+..+...++..+ ...-...+.++..-+... .-+.+.+... ..+..+...++ + ......|..++..+-...
T Consensus 155 L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~-~~~~d~v~a~~pLi~l~F~sl~--~-~~lhe~At~cic~ll~~~~~ 230 (559)
T KOG2081|consen 155 LVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLH-VFPPDQVLASFPLITLAFRSLS--D-DELHEEATECICALLYCSLD 230 (559)
T ss_pred HHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhc-cCCHHHHHhhhHHHHHHHHHcc--c-chhhHHHHHHHHHHHHHhhh
Confidence 344444554332 233333444444333221 2333444443 45555666666 3 467788888776654321
Q ss_pred -Ccc--h--HHHHhCCchHHHHHhh-CCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcC-ChHHHHHHh--ccchhhHHH
Q 015687 147 -SEN--T--RVVIDHGAVPIFVRLL-SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG-ALMPLLAQF--NEHAKLSML 217 (402)
Q Consensus 147 -~~~--~--~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g-~i~~L~~~l--~~~~~~~~~ 217 (402)
.+. . ..+...-.++....+- ...+.+-.+..++.+.+++.-- ........+ .++.+-.+| ..+++.++.
T Consensus 231 ~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf--~~~i~~np~~~l~~vellLl~~~h~~~evi 308 (559)
T KOG2081|consen 231 RSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAF--VVLISTNPEEFLRIVELLLLVAGHNDTEVI 308 (559)
T ss_pred hhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHH--HHHHhhCCCcchhHHHHHHHhccCCchhhh
Confidence 111 1 1111112333333322 2366777777777777765321 112222222 333322222 245667888
Q ss_pred HHHHHHHHHhhhCCCCCchh-hh---hchHHHHHHhc----cCCC------------hhHHHHHHHHHHHhc--cCChHH
Q 015687 218 RNATWTLSNFCRGKPQPLFE-QT---RPALPALERLI----HSND------------DEVLTDACWALSYLS--DGTNDK 275 (402)
Q Consensus 218 ~~a~~~L~~l~~~~~~~~~~-~~---~~~l~~L~~lL----~~~~------------~~v~~~a~~~l~~l~--~~~~~~ 275 (402)
.........+.+..-..... .. .+....+++++ +-+. .+.+..+...+..++ -++++.
T Consensus 309 e~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~ 388 (559)
T KOG2081|consen 309 EASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDEC 388 (559)
T ss_pred hhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 88888888888765222211 11 33333444443 1110 112222222222211 122222
Q ss_pred HHHHHHhCcHHHHHHhc--CCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC-CchhHHHHHHHHHHH
Q 015687 276 IQAVIEAGVCPRLVELL--RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISN 352 (402)
Q Consensus 276 ~~~~~~~~~i~~L~~~L--~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~-~~~~v~~~a~~~L~n 352 (402)
+..+...+ ....+...+.+++.+.+++..-+ .-+..++|.+++++-+- +...++..++..++.
T Consensus 389 ---------lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~-----~~e~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~ 454 (559)
T KOG2081|consen 389 ---------LKQMYIRLKENNASWEEVEAALFILRAVAKNVS-----PEENTIMPEVLKLICNLPEQAPLRYTSILLLGE 454 (559)
T ss_pred ---------HHHHHHHHccCCCchHHHHHHHHHHHHHhccCC-----ccccchHHHHHHHHhCCccchhHHHHHHHHHHH
Confidence 22222223 24567889999999999987544 23446778888877443 234588888888888
Q ss_pred Hhc
Q 015687 353 ITA 355 (402)
Q Consensus 353 l~~ 355 (402)
++.
T Consensus 455 ~~e 457 (559)
T KOG2081|consen 455 YSE 457 (559)
T ss_pred HHH
Confidence 775
No 438
>PF14750 INTS2: Integrator complex subunit 2
Probab=23.30 E-value=9e+02 Score=26.37 Aligned_cols=92 Identities=18% Similarity=0.130 Sum_probs=52.5
Q ss_pred CCchHHHHHhhCC----CC---------HHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHH
Q 015687 156 HGAVPIFVRLLSS----PT---------DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW 222 (402)
Q Consensus 156 ~g~i~~L~~lL~~----~~---------~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~ 222 (402)
.+++..|+..... .+ .+++..++..+..+.-+.|..-+.+.-+|.-..++..+ -
T Consensus 874 sa~vqiLlE~c~~~~~~~~~~~~~~~~lrei~~~iC~~iHq~FI~~p~L~klvhfQgyp~~llp~~-V------------ 940 (1049)
T PF14750_consen 874 SAAVQILLEICLPTEEDKNSDDSLLSELREIQCLICSFIHQMFIADPNLAKLVHFQGYPSELLPML-V------------ 940 (1049)
T ss_pred HHHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHhcCCCHHHhHHH-H------------
Confidence 3566777775522 11 14566666666666666665555555555555555444 1
Q ss_pred HHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccC
Q 015687 223 TLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG 271 (402)
Q Consensus 223 ~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~ 271 (402)
++ ...+.-+++.+-++|.-+|.+-+.-|+...++++..
T Consensus 941 ------~~-----IPSmHicldfi~Ell~~~~~~kqvFaI~L~s~L~~~ 978 (1049)
T PF14750_consen 941 ------EG-----IPSMHICLDFIPELLAQPDLEKQVFAIQLASHLCHK 978 (1049)
T ss_pred ------cc-----CcHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhh
Confidence 11 011223455566667777777788888888888744
No 439
>PF15573 Imm27: Immunity protein 27
Probab=23.07 E-value=3.6e+02 Score=22.97 Aligned_cols=91 Identities=18% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHhc-CCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 015687 286 PRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 364 (402)
Q Consensus 286 ~~L~~~L-~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 364 (402)
+.|++++ +..++.+.--|.|.+..+|++.+ +.+.+-+..|...-... +-.-|..++..++..
T Consensus 49 ~LLiqLMN~TkDE~vLNLCiRlFcSV~THdD-----L~~~nNl~FLs~asE~~----v~TF~s~A~~tlSye-------- 111 (259)
T PF15573_consen 49 NLLIQLMNQTKDEAVLNLCIRLFCSVATHDD-----LRDSNNLRFLSSASEFG----VFTFASGAITTLSYE-------- 111 (259)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHhhcchHh-----hhcccceehHhhhhHHH----HHHHHHHhhccchhh--------
Q ss_pred HHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHhhc
Q 015687 365 IEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATS 397 (402)
Q Consensus 365 ~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~ 397 (402)
++|.|+.+++. +..++-...-.+|..+..
T Consensus 112 ----VIPYLLaLleeWed~td~~~~Irdsld~fln 142 (259)
T PF15573_consen 112 ----VIPYLLALLEEWEDITDTEIAIRDSLDSFLN 142 (259)
T ss_pred ----HHHHHHHHHHHHhccchHHHHHHHHHHHHhh
No 440
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=22.81 E-value=3.8e+02 Score=21.81 Aligned_cols=76 Identities=13% Similarity=0.077 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc
Q 015687 213 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 292 (402)
Q Consensus 213 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L 292 (402)
--+++..|..++..+....... .....+++.+..-|.+ +.+|+.-++..+..++...+..+..-+ ..+++.+-..|
T Consensus 40 GLelRK~ayE~lytlLd~~~~~--~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~L-d~l~~~l~~~L 115 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTCLSR--IDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRL-DSLVEPLRKTL 115 (169)
T ss_dssp GGHHHHHHHHHHHHHHHSTCSS--S-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCC-TTTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHh
Confidence 4588999999999998764222 1245567888888877 899999999999999877664432221 14555555555
No 441
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=22.80 E-value=4.1e+02 Score=21.37 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 015687 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 186 (402)
Q Consensus 129 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~ 186 (402)
..+....+.++.+....+.-..+... ..+|.+..+|.+..+.-...++..|..+..
T Consensus 43 ~svlvD~L~vl~~~~~~~~~tLd~c~--~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~ 98 (164)
T PF13925_consen 43 PSVLVDVLSVLNQSLKPEKWTLDLCV--DLLPLIEELLQSKYESYISVALEMLRSILK 98 (164)
T ss_pred chHHHHHHHHHHHhcCcCcccHHHHH--HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 56666666666654443222222223 478899999999888888888888887753
No 442
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=22.72 E-value=8.4e+02 Score=25.01 Aligned_cols=80 Identities=15% Similarity=0.240 Sum_probs=50.7
Q ss_pred CcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh--HHHHHHH--hCCChHHHHHHhcCCCch----hHHHHHHHHHHHHh
Q 015687 283 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD--MQTQCII--NHQALPCLLDLLTQNYKK----SIKKEACWTISNIT 354 (402)
Q Consensus 283 ~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~--~~~~~i~--~~~~l~~L~~ll~~~~~~----~v~~~a~~~L~nl~ 354 (402)
.-++.+..+|.+++..+...++..|..+-.... -....++ ..-.+.++...+... +. .--..++..|..+|
T Consensus 310 ~~L~~i~~lL~~~~~~~~~~~v~lL~~l~~~~~~~~~~~~~L~l~~~~V~yFF~~l~~~-~~~~~~~~~~~~~~lL~~l~ 388 (696)
T PF14838_consen 310 SHLPDIAQLLLHSDPEVAHAAVKLLDLLPLPEKAPLSPSLLLKLSRALVKYFFLCLHEK-DVSGKQEGLKRCCQLLSRLC 388 (696)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCccccCCCHHHHHHHHHHHHHHHHHHHhhc-cchhhHHHHHHHHHHHHHHH
Confidence 456788888999999999999999988865441 1112221 223455566666544 22 23456778888888
Q ss_pred cCCHHHHHH
Q 015687 355 AGNVNQIQA 363 (402)
Q Consensus 355 ~~~~~~~~~ 363 (402)
..++.....
T Consensus 389 ~~s~~a~~~ 397 (696)
T PF14838_consen 389 SYSPAARKA 397 (696)
T ss_pred ccCchHHHH
Confidence 875554443
No 443
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=22.39 E-value=1.6e+02 Score=28.52 Aligned_cols=70 Identities=20% Similarity=0.229 Sum_probs=49.7
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 285 i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
...+-....+.++.++..+..++++++.+....+..+-+..+-..++.++..+ .+.+-+.+..++.-+..
T Consensus 330 ~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~-~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 330 LKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTP-EPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhccc-ccccchhhhHHHHHhhh
Confidence 34444455778899999999999999987654443333445666778888777 77777777777776543
No 444
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=21.27 E-value=1.1e+02 Score=23.96 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=23.2
Q ss_pred cCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 367 AGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 367 ~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
..+-..+..+|.++++++|+.|+.||...
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~ 44 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTW 44 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 33566778889999999999999988753
No 445
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=20.73 E-value=3.7e+02 Score=20.07 Aligned_cols=70 Identities=16% Similarity=0.072 Sum_probs=43.1
Q ss_pred ChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCC
Q 015687 200 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (402)
Q Consensus 200 ~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~ 272 (402)
.+|.+...+.....++.+..+...++.|+...+-. ......++..+.......+. ...++.++..++...
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~-~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS-DEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc-HHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 46667777754677889999999999999874322 22223334444333333323 477888888877443
No 446
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.22 E-value=5.2e+02 Score=26.03 Aligned_cols=89 Identities=16% Similarity=0.148 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCh
Q 015687 218 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP 297 (402)
Q Consensus 218 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~ 297 (402)
..|..+++.|... .+.+.....++..++.++.+....+...+|.++-++..++... -...+++..+..++...+.
T Consensus 303 ~vav~c~~~Ll~a--~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D~~g---~~sl~~Vr~i~~llK~rn~ 377 (704)
T KOG2153|consen 303 QVAVQCACELLEA--VPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFENDNGG---SGSLAIVRIINSLLKTRNY 377 (704)
T ss_pred HHHHHHHHHHHHh--hhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCCcc---chhHHHHHHHHHHhhhhcc
Confidence 3445555555543 3445566777888888888888889999999999988665521 1222456666666666666
Q ss_pred hhHHHHHHHHHHhh
Q 015687 298 SVLIPALRTVGNIV 311 (402)
Q Consensus 298 ~v~~~a~~~l~nl~ 311 (402)
.+...++.++.++=
T Consensus 378 ~v~~~~~~~~lsLr 391 (704)
T KOG2153|consen 378 EVLPDMITTFLSLR 391 (704)
T ss_pred cchhhHHHHHHhcc
Confidence 66667777766653
No 447
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=20.17 E-value=4.5e+02 Score=20.86 Aligned_cols=58 Identities=24% Similarity=0.277 Sum_probs=41.3
Q ss_pred HHHhCcHHHHHHhcCCCC--------------hhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC
Q 015687 279 VIEAGVCPRLVELLRHPS--------------PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 336 (402)
Q Consensus 279 ~~~~~~i~~L~~~L~~~~--------------~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~ 336 (402)
-.+.-+++++-.+|...- ..+|..|+..+..++..............++|.|+..|.+
T Consensus 76 ~~e~~iIdrvt~~L~E~P~~d~~~~~~t~~~i~~lRl~aL~~L~~fa~s~~G~~~LA~h~~Ai~RLv~~L~~ 147 (149)
T PF12331_consen 76 NVENYIIDRVTNLLSEPPKVDEGWAPYTPAEICTLRLEALRTLTSFAFSPFGALQLASHPTAIPRLVRALHD 147 (149)
T ss_pred hHHHHHHHHHHHHccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHHhCchhHHHHHHHHHc
Confidence 344456777777774321 3588999999999999777555555566889999988864
Done!