Query 015687
Match_columns 402
No_of_seqs 339 out of 2056
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 16:56:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015687.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015687hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 100.0 1.2E-62 4.1E-67 477.1 35.2 399 1-400 1-409 (529)
2 4b8j_A Importin subunit alpha- 100.0 3.3E-56 1.1E-60 433.2 36.9 399 1-399 3-402 (528)
3 1wa5_B Importin alpha subunit; 100.0 1.5E-52 5.1E-57 407.4 30.3 391 8-400 13-415 (530)
4 3ul1_B Importin subunit alpha- 100.0 1.1E-50 3.7E-55 391.1 35.8 371 29-400 14-390 (510)
5 2jdq_A Importin alpha-1 subuni 100.0 2.1E-39 7.3E-44 308.6 37.8 327 72-399 21-349 (450)
6 3tpo_A Importin subunit alpha- 100.0 1.8E-39 6.1E-44 314.6 32.0 324 71-398 119-450 (529)
7 3ul1_B Importin subunit alpha- 100.0 1.2E-39 4E-44 314.2 30.5 324 71-398 100-431 (510)
8 3now_A UNC-45 protein, SD10334 100.0 8.9E-40 3E-44 322.1 25.9 320 73-399 379-739 (810)
9 3nmz_A APC variant protein; pr 100.0 2.3E-39 7.7E-44 303.0 26.5 324 68-399 29-410 (458)
10 3nmz_A APC variant protein; pr 100.0 1.4E-38 4.9E-43 297.6 26.7 326 70-399 69-452 (458)
11 2jdq_A Importin alpha-1 subuni 100.0 5.8E-37 2E-41 291.8 30.7 324 71-399 64-392 (450)
12 4b8j_A Importin subunit alpha- 100.0 1.6E-36 5.4E-41 294.7 30.9 324 71-399 117-445 (528)
13 1wa5_B Importin alpha subunit; 100.0 2.6E-36 8.9E-41 293.2 32.4 325 71-399 130-459 (530)
14 1xm9_A Plakophilin 1; armadill 100.0 5E-37 1.7E-41 291.5 26.7 320 72-399 3-451 (457)
15 3now_A UNC-45 protein, SD10334 100.0 8.5E-37 2.9E-41 300.9 24.6 326 70-399 420-784 (810)
16 3l6x_A Catenin delta-1; cateni 100.0 1.7E-35 6E-40 282.6 28.4 322 71-398 48-477 (584)
17 3nmw_A APC variant protein; AR 100.0 3.9E-34 1.3E-38 260.1 22.2 268 129-399 46-336 (354)
18 1jdh_A Beta-catenin; beta-cate 100.0 2.6E-33 8.9E-38 272.1 27.7 322 71-399 101-430 (529)
19 1xm9_A Plakophilin 1; armadill 100.0 1.2E-33 4.1E-38 268.3 24.2 282 115-399 3-362 (457)
20 3nmw_A APC variant protein; AR 100.0 3.7E-34 1.3E-38 260.3 18.6 274 85-361 46-340 (354)
21 2z6h_A Catenin beta-1, beta-ca 100.0 1E-32 3.5E-37 273.7 27.8 317 71-394 98-420 (644)
22 3l6x_A Catenin delta-1; cateni 100.0 8.1E-33 2.8E-37 264.2 22.2 291 108-400 42-387 (584)
23 1jdh_A Beta-catenin; beta-cate 100.0 1.5E-31 5.2E-36 259.7 26.5 322 71-398 59-386 (529)
24 4hxt_A De novo protein OR329; 100.0 1.2E-30 4.2E-35 228.4 28.4 244 114-401 2-245 (252)
25 2z6g_A B-catenin; FULL-length, 100.0 7E-31 2.4E-35 264.6 27.5 317 71-394 234-556 (780)
26 2z6h_A Catenin beta-1, beta-ca 100.0 1.5E-30 5.3E-35 258.1 27.9 323 71-399 56-384 (644)
27 2z6g_A B-catenin; FULL-length, 100.0 3.4E-30 1.2E-34 259.7 26.5 322 71-398 192-519 (780)
28 4db8_A Armadillo-repeat protei 100.0 2.6E-30 9E-35 226.5 20.5 239 114-355 12-251 (252)
29 4db8_A Armadillo-repeat protei 100.0 8E-30 2.7E-34 223.4 20.8 239 157-397 12-251 (252)
30 4hxt_A De novo protein OR329; 100.0 6.6E-29 2.3E-33 217.4 25.8 241 71-356 2-242 (252)
31 3opb_A SWI5-dependent HO expre 99.9 5.4E-26 1.9E-30 220.1 23.4 320 73-397 336-728 (778)
32 4db6_A Armadillo repeat protei 99.9 1.9E-25 6.6E-30 189.9 22.3 200 197-398 10-210 (210)
33 4db6_A Armadillo repeat protei 99.9 3.9E-25 1.3E-29 188.0 20.4 199 112-312 10-209 (210)
34 1xqr_A HSPBP1 protein; armadil 99.9 8.6E-25 2.9E-29 193.5 19.7 226 129-355 54-287 (296)
35 1xqr_A HSPBP1 protein; armadil 99.9 3.3E-24 1.1E-28 189.8 16.8 187 212-399 52-240 (296)
36 3tt9_A Plakophilin-2; cell adh 99.9 1.9E-23 6.5E-28 177.0 15.0 197 115-313 9-230 (233)
37 3opb_A SWI5-dependent HO expre 99.9 5.6E-22 1.9E-26 192.2 23.4 314 72-397 297-683 (778)
38 3tt9_A Plakophilin-2; cell adh 99.9 1.9E-22 6.3E-27 170.9 12.7 196 72-271 9-230 (233)
39 4fdd_A Transportin-1; heat rep 99.8 7.1E-19 2.4E-23 180.1 16.1 316 72-398 129-472 (852)
40 3grl_A General vesicular trans 99.8 2.6E-16 8.9E-21 148.9 27.3 322 71-398 21-395 (651)
41 1oyz_A Hypothetical protein YI 99.8 8.1E-17 2.8E-21 142.8 21.6 229 112-396 21-249 (280)
42 1oyz_A Hypothetical protein YI 99.8 2E-16 7E-21 140.2 23.9 255 71-394 23-279 (280)
43 4fdd_A Transportin-1; heat rep 99.7 4.8E-17 1.6E-21 166.5 20.8 309 74-398 93-430 (852)
44 3grl_A General vesicular trans 99.7 1.8E-15 6.3E-20 143.1 29.5 326 71-397 60-449 (651)
45 1b3u_A Protein (protein phosph 99.7 1.6E-15 5.6E-20 148.6 19.9 305 72-397 282-587 (588)
46 1b3u_A Protein (protein phosph 99.7 1.1E-15 3.9E-20 149.7 18.5 304 73-397 244-548 (588)
47 2vgl_B AP-2 complex subunit be 99.7 1.8E-14 6.2E-19 141.0 23.9 300 72-396 87-418 (591)
48 1ibr_B P95, importin beta-1 su 99.6 1.2E-15 4.2E-20 144.9 14.4 310 74-398 93-438 (462)
49 3ltm_A Alpha-REP4; protein eng 99.6 2.2E-14 7.4E-19 121.5 18.8 189 156-400 18-206 (211)
50 2vgl_B AP-2 complex subunit be 99.6 1.8E-14 6E-19 141.1 20.7 297 71-398 13-312 (591)
51 3ltj_A Alpharep-4; protein eng 99.6 5.5E-14 1.9E-18 118.0 20.4 185 157-397 14-198 (201)
52 1qgr_A Protein (importin beta 99.6 1.9E-14 6.3E-19 147.9 21.1 317 72-398 129-480 (876)
53 1ibr_B P95, importin beta-1 su 99.6 8.2E-15 2.8E-19 139.2 14.0 278 71-356 128-438 (462)
54 3ltm_A Alpha-REP4; protein eng 99.6 7.8E-14 2.7E-18 118.0 18.5 187 113-356 18-204 (211)
55 1w63_A Adapter-related protein 99.6 5.1E-13 1.8E-17 131.2 25.6 337 17-398 20-415 (618)
56 3ltj_A Alpharep-4; protein eng 99.6 1.4E-13 4.7E-18 115.6 18.4 185 113-354 13-197 (201)
57 2bpt_A Importin beta-1 subunit 99.6 3.5E-14 1.2E-18 145.5 17.1 316 73-398 371-712 (861)
58 1qgr_A Protein (importin beta 99.6 8.3E-14 2.8E-18 143.0 19.2 311 73-397 323-722 (876)
59 2bpt_A Importin beta-1 subunit 99.6 2.1E-13 7.3E-18 139.7 22.0 316 72-398 135-483 (861)
60 1w63_A Adapter-related protein 99.5 7.4E-12 2.5E-16 123.0 24.3 294 73-399 36-381 (618)
61 1u6g_C TIP120 protein, CAND1; 99.5 6.4E-13 2.2E-17 141.2 17.7 314 72-398 7-363 (1230)
62 1u6g_C TIP120 protein, CAND1; 99.4 4.3E-12 1.5E-16 134.9 17.5 318 72-399 87-465 (1230)
63 2vgl_A Adaptor protein complex 99.4 5.3E-10 1.8E-14 109.5 30.8 339 19-397 23-433 (621)
64 4gmo_A Putative uncharacterize 99.3 4.7E-11 1.6E-15 118.5 17.3 215 114-354 35-257 (684)
65 2db0_A 253AA long hypothetical 99.3 1.9E-09 6.6E-14 84.4 21.3 217 155-397 30-246 (253)
66 4ady_A RPN2, 26S proteasome re 99.3 4.4E-10 1.5E-14 111.8 21.7 272 72-399 393-678 (963)
67 4gmo_A Putative uncharacterize 99.2 1.5E-10 5.1E-15 114.9 12.7 195 200-396 35-257 (684)
68 2vgl_A Adaptor protein complex 99.2 2.6E-09 8.8E-14 104.7 20.8 255 73-355 148-433 (621)
69 3tjz_B Coatomer subunit gamma; 99.1 1.4E-08 4.8E-13 91.1 20.0 277 73-394 70-350 (355)
70 4ady_A RPN2, 26S proteasome re 99.1 2.4E-08 8.4E-13 99.4 23.4 274 73-399 431-721 (963)
71 2db0_A 253AA long hypothetical 99.0 1.7E-07 5.7E-12 73.6 21.6 216 112-355 30-246 (253)
72 2qk2_A LP04448P; mini spindles 99.0 7E-09 2.4E-13 89.3 13.4 185 202-397 18-205 (242)
73 2qk2_A LP04448P; mini spindles 98.9 4.8E-09 1.6E-13 90.4 10.5 186 160-355 18-205 (242)
74 2qk1_A Protein STU2; STU2P, XM 98.9 2.1E-08 7.1E-13 86.4 13.7 191 118-312 20-220 (249)
75 3tjz_B Coatomer subunit gamma; 98.9 1.4E-07 4.7E-12 84.7 18.0 279 78-397 32-316 (355)
76 3b2a_A TON_1937, putative unch 98.9 1.6E-07 5.5E-12 76.9 16.6 186 72-271 34-219 (265)
77 3b2a_A TON_1937, putative unch 98.9 6.6E-08 2.3E-12 79.2 14.2 188 114-314 33-220 (265)
78 1te4_A Conserved protein MTH18 98.9 3.3E-10 1.1E-14 87.7 0.4 121 240-395 11-131 (131)
79 2qk1_A Protein STU2; STU2P, XM 98.8 7.8E-08 2.7E-12 82.8 14.1 194 161-355 20-220 (249)
80 2iw3_A Elongation factor 3A; a 98.8 7.6E-07 2.6E-11 89.8 22.7 304 71-397 14-324 (986)
81 1te4_A Conserved protein MTH18 98.7 2.8E-09 9.5E-14 82.4 1.2 121 113-268 11-131 (131)
82 4hat_C Exportin-1; heat repeat 98.7 8.9E-06 3E-10 83.9 26.9 296 82-399 206-571 (1023)
83 1ho8_A Vacuolar ATP synthase s 98.7 6.4E-06 2.2E-10 75.7 22.5 320 72-398 78-477 (480)
84 1ho8_A Vacuolar ATP synthase s 98.6 5.1E-06 1.8E-10 76.3 18.8 234 118-355 171-476 (480)
85 1wa5_C Importin alpha RE-expor 98.4 5.4E-05 1.8E-09 78.3 23.6 305 82-395 416-789 (960)
86 3dad_A FH1/FH2 domain-containi 98.3 1.3E-05 4.4E-10 70.1 14.6 157 73-232 120-289 (339)
87 1wa5_C Importin alpha RE-expor 98.3 0.00012 4E-09 75.9 24.4 257 130-397 376-670 (960)
88 3m1i_C Exportin-1; heat repeat 98.2 0.00079 2.7E-08 70.3 28.6 297 83-398 207-570 (1049)
89 2x1g_F Cadmus; transport prote 98.1 5.2E-05 1.8E-09 78.6 17.1 302 83-398 256-616 (971)
90 3ibv_A Exportin-T; karyopherin 98.1 2E-05 6.9E-10 81.1 13.0 304 81-400 203-569 (980)
91 2iw3_A Elongation factor 3A; a 98.1 0.0011 3.8E-08 67.2 25.1 265 72-354 55-323 (986)
92 3gjx_A Exportin-1; transport, 98.1 0.0037 1.3E-07 64.5 28.9 297 82-400 218-598 (1073)
93 2x1g_F Cadmus; transport prote 98.1 0.00038 1.3E-08 72.2 21.3 251 131-397 437-722 (971)
94 3dad_A FH1/FH2 domain-containi 98.0 7.1E-05 2.4E-09 65.5 12.4 154 244-399 121-288 (339)
95 2x19_B Importin-13; nuclear tr 98.0 0.00018 6.2E-09 74.5 17.0 306 74-398 244-600 (963)
96 3oc3_A Helicase MOT1, MOT1; re 97.9 0.00026 8.7E-09 65.8 14.4 230 69-354 172-403 (800)
97 4hat_C Exportin-1; heat repeat 97.9 0.0028 9.6E-08 65.5 23.2 154 242-399 452-620 (1023)
98 4ffb_C Protein STU2; tubulin f 97.8 0.00062 2.1E-08 59.4 15.8 192 71-271 10-213 (278)
99 3m1i_C Exportin-1; heat repeat 97.8 0.0018 6E-08 67.7 20.4 234 157-397 344-618 (1049)
100 1upk_A MO25 protein; transfera 97.7 0.006 2.1E-07 53.3 19.1 240 153-395 74-330 (341)
101 2x19_B Importin-13; nuclear tr 97.7 0.0011 3.9E-08 68.5 17.5 220 167-397 459-714 (963)
102 2of3_A ZYG-9; multifunctional 97.5 0.0018 6.3E-08 55.3 13.1 185 162-365 51-246 (266)
103 4ffb_C Protein STU2; tubulin f 97.5 0.0018 6.1E-08 56.5 13.1 184 204-396 14-211 (278)
104 2of3_A ZYG-9; multifunctional 97.4 0.0089 3E-07 51.1 16.3 177 74-270 49-236 (266)
105 1upk_A MO25 protein; transfera 97.4 0.008 2.7E-07 52.5 15.4 201 193-398 72-284 (341)
106 1lrv_A LRV, leucine-rich repea 97.2 0.0003 1E-08 59.7 5.0 46 328-393 197-242 (244)
107 3l9t_A Putative uncharacterize 97.1 0.018 6.1E-07 47.8 14.4 144 116-281 73-218 (240)
108 3ibv_A Exportin-T; karyopherin 97.1 0.01 3.5E-07 61.1 15.9 236 129-378 457-748 (980)
109 1lrv_A LRV, leucine-rich repea 97.0 0.00055 1.9E-08 58.1 4.8 67 246-350 175-241 (244)
110 3oc3_A Helicase MOT1, MOT1; re 96.8 0.0029 9.8E-08 59.0 7.4 188 128-350 241-431 (800)
111 3gjx_A Exportin-1; transport, 96.7 0.3 1E-05 50.5 22.3 222 70-313 27-276 (1073)
112 2fv2_A RCD1 required for cell 96.6 0.038 1.3E-06 46.2 12.5 143 254-397 14-174 (268)
113 3a6p_A Exportin-5; exportin-5, 96.6 0.74 2.5E-05 48.6 25.1 300 72-397 12-380 (1204)
114 2fv2_A RCD1 required for cell 96.5 0.039 1.3E-06 46.2 11.9 140 89-230 74-225 (268)
115 3u0r_A Apoptosis inhibitor 5; 96.5 0.47 1.6E-05 43.6 19.8 245 129-400 42-301 (507)
116 3u0r_A Apoptosis inhibitor 5; 96.4 0.088 3E-06 48.3 14.1 124 168-311 39-162 (507)
117 2f31_A Diaphanous protein homo 96.2 0.16 5.6E-06 42.5 14.3 138 91-230 21-181 (233)
118 3l9t_A Putative uncharacterize 96.1 0.081 2.8E-06 43.9 11.5 141 203-366 74-218 (240)
119 3eg5_B Protein diaphanous homo 96.0 0.31 1.1E-05 44.2 16.2 157 74-232 69-249 (383)
120 3ebb_A Phospholipase A2-activa 95.9 0.3 1E-05 42.7 15.2 173 116-294 105-287 (304)
121 3ebb_A Phospholipase A2-activa 95.4 0.14 4.9E-06 44.7 11.2 139 86-230 117-264 (304)
122 3c2g_A SYS-1 protein; beta-cat 95.4 0.23 7.9E-06 43.5 11.9 110 181-292 266-376 (619)
123 1lsh_A Lipovitellin (LV-1N, LV 95.3 2.3 8E-05 44.1 21.5 133 201-352 393-540 (1056)
124 3c2g_A SYS-1 protein; beta-cat 95.3 1.4 4.8E-05 38.7 21.5 129 266-396 267-402 (619)
125 1lsh_A Lipovitellin (LV-1N, LV 95.0 1 3.5E-05 46.8 17.7 202 115-357 357-578 (1056)
126 2bnx_A Diaphanous protein homo 95.0 1.2 4.1E-05 40.4 16.2 141 91-233 25-188 (386)
127 3o2t_A Symplekin; heat repeat, 94.6 2.5 8.4E-05 38.1 18.9 88 86-184 40-127 (386)
128 3a6p_A Exportin-5; exportin-5, 94.6 1.2 4.2E-05 47.0 17.4 247 129-396 27-330 (1204)
129 2f31_A Diaphanous protein homo 94.5 1.8 6.1E-05 36.1 16.7 166 147-344 34-217 (233)
130 3gs3_A Symplekin, LD45768P; he 94.3 2.1 7.3E-05 36.2 21.4 101 73-184 17-117 (257)
131 3eg5_B Protein diaphanous homo 94.1 2.5 8.7E-05 38.2 16.3 145 147-294 100-275 (383)
132 2p8q_B Snurportin-1; heat repe 94.1 0.036 1.2E-06 31.4 2.4 38 11-50 2-40 (40)
133 2npp_B PP2A, B subunit, serine 91.9 5 0.00017 36.9 14.7 231 73-317 164-404 (449)
134 3o2t_A Symplekin; heat repeat, 91.7 3.7 0.00013 37.0 13.3 162 199-365 63-266 (386)
135 3qml_C Protein SLS1, nucleotid 91.7 3 0.0001 35.9 12.0 137 254-396 41-188 (315)
136 2bnx_A Diaphanous protein homo 91.2 5 0.00017 36.3 14.0 132 254-385 71-220 (386)
137 3fga_B Serine/threonine-protei 90.0 6.5 0.00022 35.5 13.3 229 73-315 131-369 (403)
138 3fga_B Serine/threonine-protei 89.1 13 0.00043 33.7 17.3 234 152-397 124-366 (403)
139 2npp_B PP2A, B subunit, serine 86.7 19 0.00065 33.1 18.5 234 149-396 154-398 (449)
140 1x5b_A Signal transducing adap 85.0 1.6 5.3E-05 34.2 5.5 74 71-144 52-125 (163)
141 3ldz_A STAM-1, signal transduc 84.8 1.1 3.9E-05 33.9 4.5 73 71-144 42-114 (140)
142 1mhq_A ADP-ribosylation factor 84.3 1.9 6.4E-05 33.1 5.5 74 71-144 38-116 (148)
143 1vsy_5 Proteasome activator BL 83.5 4.5 0.00015 41.6 9.5 188 158-355 134-365 (997)
144 3g2s_A C-terminal fragment of 83.0 2.3 7.9E-05 32.6 5.6 73 71-144 48-126 (149)
145 3zyq_A Hepatocyte growth facto 80.7 1.5 5.1E-05 36.4 4.1 74 71-144 45-118 (226)
146 1x5b_A Signal transducing adap 80.7 3.8 0.00013 31.9 6.2 74 158-231 53-127 (163)
147 1juq_A ADP-ribosylation factor 77.9 3.1 0.00011 32.7 4.9 74 71-144 50-128 (171)
148 1vsy_5 Proteasome activator BL 76.9 2 6.8E-05 44.2 4.4 182 200-395 761-964 (997)
149 1dvp_A HRS, hepatocyte growth 76.1 2.3 8E-05 35.0 3.9 74 71-144 42-115 (220)
150 3zyq_A Hepatocyte growth facto 74.8 10 0.00035 31.3 7.4 74 158-231 46-120 (226)
151 2b6c_A Hypothetical protein EF 73.7 35 0.0012 27.8 11.2 134 210-366 65-199 (220)
152 2jak_A Serine/threonine-protei 72.5 9.6 0.00033 34.3 7.1 72 73-146 176-247 (392)
153 3gae_A Protein DOA1; UFD3, CDC 71.3 25 0.00087 29.5 9.2 134 132-272 71-219 (253)
154 3pst_A Protein DOA1; protein d 70.8 58 0.002 29.6 11.8 131 132-273 243-392 (425)
155 2jak_A Serine/threonine-protei 70.8 60 0.002 29.2 11.9 192 151-350 168-362 (392)
156 1dvp_A HRS, hepatocyte growth 69.5 8.2 0.00028 31.7 5.7 74 158-231 43-117 (220)
157 3qml_C Protein SLS1, nucleotid 68.2 42 0.0014 29.0 9.7 100 297-399 42-152 (315)
158 3gae_A Protein DOA1; UFD3, CDC 65.4 4.8 0.00017 33.9 3.6 103 294-399 101-219 (253)
159 3l3f_X Protein DOA1, DOA1/UFD3 65.3 65 0.0022 28.6 10.9 131 132-273 180-329 (362)
160 3g2s_A C-terminal fragment of 63.5 38 0.0013 25.7 8.0 70 115-185 49-125 (149)
161 1elk_A Target of MYB1; superhe 60.9 14 0.00049 28.4 5.3 74 71-144 53-130 (157)
162 3pst_A Protein DOA1; protein d 60.2 16 0.00054 33.2 6.1 103 293-398 272-390 (425)
163 3ldz_A STAM-1, signal transduc 60.2 46 0.0016 24.9 7.9 94 293-396 19-113 (140)
164 3l3f_X Protein DOA1, DOA1/UFD3 58.2 11 0.00039 33.4 4.7 103 293-398 209-327 (362)
165 4atg_A TAF6; transcription, TF 58.1 46 0.0016 26.6 7.8 113 157-270 40-162 (196)
166 3jxy_A Alkylpurine DNA glycosy 57.7 78 0.0027 26.0 10.8 77 284-368 132-208 (232)
167 1mhq_A ADP-ribosylation factor 55.5 35 0.0012 25.9 6.5 73 240-312 37-116 (148)
168 3gjx_B Snurportin-1; transport 55.1 2.7 9.1E-05 36.9 0.2 44 8-52 28-71 (365)
169 1juq_A ADP-ribosylation factor 52.4 30 0.001 27.0 5.8 73 240-312 49-128 (171)
170 2b6c_A Hypothetical protein EF 50.0 1E+02 0.0035 25.0 12.3 141 117-281 58-199 (220)
171 3gs3_A Symplekin, LD45768P; he 49.7 1.1E+02 0.0039 25.5 17.8 69 238-311 50-118 (257)
172 3vld_A DNA mismatch repair pro 49.6 1.6E+02 0.0055 27.2 12.7 128 91-230 96-226 (500)
173 1elk_A Target of MYB1; superhe 45.9 37 0.0013 26.0 5.4 73 158-230 54-131 (157)
174 3s4w_B Protein FACD2, fanconi 43.1 2.9E+02 0.01 29.3 12.8 260 115-396 158-466 (1323)
175 1vdy_A Hypothetical protein (R 42.7 61 0.0021 24.3 5.9 92 298-398 26-131 (140)
176 3jxy_A Alkylpurine DNA glycosy 41.9 1.4E+02 0.0048 24.3 12.0 141 118-282 65-207 (232)
177 1vsy_4 Proteasome activator BL 39.4 1.6E+02 0.0053 29.5 9.9 117 151-269 334-454 (799)
178 1t06_A Hypothetical protein; s 34.8 69 0.0024 26.4 5.7 76 285-366 110-191 (235)
179 1a92_A Delta antigen; leucine 34.0 37 0.0013 19.8 2.6 19 24-42 11-29 (50)
180 1sz9_A PCF11 protein; RNA poly 30.8 1.7E+02 0.0057 21.9 7.4 65 327-392 45-109 (144)
181 1sz9_A PCF11 protein; RNA poly 30.7 1.3E+02 0.0044 22.6 6.1 88 253-351 23-110 (144)
182 3vld_A DNA mismatch repair pro 30.2 3.3E+02 0.011 25.2 18.3 188 72-272 117-319 (500)
183 3rru_A TOM1L1 protein; structu 29.9 47 0.0016 25.3 3.6 75 71-145 53-131 (152)
184 1vsy_4 Proteasome activator BL 26.7 4.2E+02 0.014 26.4 10.6 100 210-312 349-455 (799)
185 4flb_A Regulation of nuclear P 24.4 54 0.0018 24.1 3.0 62 242-313 9-70 (132)
186 4flb_A Regulation of nuclear P 22.6 1.3E+02 0.0044 21.9 4.8 60 201-270 10-69 (132)
187 1vdy_A Hypothetical protein (R 22.3 96 0.0033 23.2 3.9 32 369-400 50-81 (140)
188 4fu3_A Regulation of nuclear P 22.2 1.6E+02 0.0056 21.4 5.3 57 202-268 10-66 (135)
189 4fu3_A Regulation of nuclear P 20.1 2.4E+02 0.0081 20.5 5.9 60 243-312 9-68 (135)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.2e-62 Score=477.12 Aligned_cols=399 Identities=48% Similarity=0.775 Sum_probs=322.2
Q ss_pred CCCCCCC-ccHHHhhhccC-CCCchHHhhhhHHHHHHHHHHhhhHHHHhhhhccccCCCC-Ccchh--hhhhhhhccHHH
Q 015687 1 MSLRPNA-RTEVRRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQP-LTNSA--ALDNKKLESLPA 75 (402)
Q Consensus 1 ~~~~~~~-~~~~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~~~~kr~~~~~~~~~-~~~~~--~~~~~~~~~i~~ 75 (402)
|++++|. .+++|+++||+ |++++|+||||++++++|||+||||++.|||++....++. ++... .........++.
T Consensus 1 ~~~~~~~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (529)
T 3tpo_A 1 MSTNENANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVED 80 (529)
T ss_dssp -------------------------------------------CCSCSCCCCCC---------------CGGGSSCCHHH
T ss_pred CCCCCCCCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHH
Confidence 7776655 67899999998 9999999999999999999999999999999875432222 22111 111111246899
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHh
Q 015687 76 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID 155 (402)
Q Consensus 76 l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 155 (402)
+++.++|+|++.++.|+..++++++.+++++++.+++.|++|.|+++|..++++.++..|+|+|+||+.++++++..+++
T Consensus 81 lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~ 160 (529)
T 3tpo_A 81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD 160 (529)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999889999999999999999999987666899999999999999999999999999
Q ss_pred CCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccch----hhHHHHHHHHHHHHhhhCC
Q 015687 156 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 156 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~----~~~~~~~a~~~L~~l~~~~ 231 (402)
.|++|.|+.+|.+++.++++.|+|+|+||+.+++.+|+.+.+.|++++|+.++.... ...+++.++|++++++.+.
T Consensus 161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 240 (529)
T 3tpo_A 161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 240 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999995432 3467899999999999987
Q ss_pred -CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 015687 232 -PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (402)
Q Consensus 232 -~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl 310 (402)
+........+++|.|+.++.+++++++..++|+|++++.+.++..+.+.+.|+++.|+.+|.++++.++.+++++|+|+
T Consensus 241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl 320 (529)
T 3tpo_A 241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320 (529)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 6666777789999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred hcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHH
Q 015687 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW 390 (402)
Q Consensus 311 ~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 390 (402)
+.+++..+..+++.|+++.|+.+|.++ ++.++++|+|+|+||+.++++++..+++.|++|.|+.++.+++++++++|+|
T Consensus 321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~ 399 (529)
T 3tpo_A 321 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAW 399 (529)
T ss_dssp TTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHH
Confidence 999999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCC
Q 015687 391 AISNATSGGS 400 (402)
Q Consensus 391 aL~nl~~~~~ 400 (402)
+|+|++.+|+
T Consensus 400 aL~nl~~~~~ 409 (529)
T 3tpo_A 400 AITNYTSGGT 409 (529)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHcCCC
Confidence 9999998765
No 2
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=3.3e-56 Score=433.18 Aligned_cols=399 Identities=87% Similarity=1.305 Sum_probs=319.5
Q ss_pred CCCCCCCccHHHhhhccCCCCchHHhhhhHHHHHHHHHHhhhHHHHhhhhccccCCCC-CcchhhhhhhhhccHHHHHHh
Q 015687 1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQP-LTNSAALDNKKLESLPAMVAG 79 (402)
Q Consensus 1 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lRk~~r~~~~~~kr~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~ 79 (402)
|++.++.+++.|+++||++++++|+|+||+++.++|||+||+|++.|||++....+.. ++.......+....+|.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~ 82 (528)
T 4b8j_A 3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAATGVDKKLESLPAMIGG 82 (528)
T ss_dssp ------------------------CCCCC-----------------CCCC----------------------CHHHHHHH
T ss_pred CCCCCCCChHHHHHhhcccCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCcccccccccccchhhhHHHHHHHHHH
Confidence 6777777889999999999999999999999999999999999999999974322221 110011111233579999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCch
Q 015687 80 VWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAV 159 (402)
Q Consensus 80 l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i 159 (402)
|.++++..+..|++.|+++++.+.+++.+.+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|++
T Consensus 83 L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i 162 (528)
T 4b8j_A 83 VYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAV 162 (528)
T ss_dssp HTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred HcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcH
Confidence 99999999999999999999877558889999999999999999987658999999999999999889999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhh
Q 015687 160 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239 (402)
Q Consensus 160 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 239 (402)
+.|+.+|.++++.+++.|+|+|+||+.+.+.++..+...|++++|+.++..+.+..++..++|+|.+|+...+.......
T Consensus 163 ~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 242 (528)
T 4b8j_A 163 PIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 242 (528)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH
Confidence 99999999999999999999999999999989999999999999999997678899999999999999999877777778
Q ss_pred hchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 015687 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 319 (402)
Q Consensus 240 ~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~ 319 (402)
.+++|.|+.+|.+++++++..++|+|++++.+.+..++.+++.|+++.|+.+|.++++.++..|+++|+|++.+++...+
T Consensus 243 ~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 322 (528)
T 4b8j_A 243 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ 322 (528)
T ss_dssp TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999888888899999999999999999999999999999999999999999
Q ss_pred HHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 320 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 320 ~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
.+++.|++|.|+.+|.++.++.++++|+|+|+||+.++++++..+++.|++|.|+.+|.+++++++.+|+|+|+|++.+|
T Consensus 323 ~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~ 402 (528)
T 4b8j_A 323 CIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGG 402 (528)
T ss_dssp HHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999987657899999999999999999999999999999999999999999999999999999999875
No 3
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=1.5e-52 Score=407.40 Aligned_cols=391 Identities=55% Similarity=0.826 Sum_probs=340.8
Q ss_pred ccHHHhhhccC-C-CCchHHhhhhHHHHHHHHHHhhhHHHHhhhhcccc---CCCCCcch-----hhhhh-hhhccHHHH
Q 015687 8 RTEVRRSKYKV-A-VDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQ---AHQPLTNS-----AALDN-KKLESLPAM 76 (402)
Q Consensus 8 ~~~~~~~~~k~-~-~~~~~~r~~r~~~~~~lRk~~r~~~~~~kr~~~~~---~~~~~~~~-----~~~~~-~~~~~i~~l 76 (402)
+++.|++.||+ | ++++|+||||+++.++|||+||++++.|||++... .+..++.+ ..... ...+.++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 92 (530)
T 1wa5_B 13 VPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQM 92 (530)
T ss_dssp CCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHH
T ss_pred chHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHHHHH
Confidence 55789999999 8 99999999999999999999999999999997542 11111100 00110 122579999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhC
Q 015687 77 VAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH 156 (402)
Q Consensus 77 ~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 156 (402)
++.|+++++..+..|+..|+++++.+.+++.+.+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.
T Consensus 93 v~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~ 172 (530)
T 1wa5_B 93 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA 172 (530)
T ss_dssp HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHC
Confidence 99999999999999999999998876567788899999999999999987338999999999999999888899999999
Q ss_pred CchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC-CCCc
Q 015687 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPL 235 (402)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~ 235 (402)
|+++.|+.+|.++++.+++.|+|+|++++.+.+..++.+...|+++.|+.++ .+.+..++..++|+|.+|+.+. +...
T Consensus 173 g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~ 251 (530)
T 1wa5_B 173 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPD 251 (530)
T ss_dssp TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence 9999999999999999999999999999999888999999999999999999 5588899999999999999987 6667
Q ss_pred hhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 015687 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 315 (402)
Q Consensus 236 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~ 315 (402)
.....+++|.|+.+|.++++.++..++|+|.+++...++..+.+++.|+++.|+.+|.++++.++..|+++|++++.+++
T Consensus 252 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~ 331 (530)
T 1wa5_B 252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND 331 (530)
T ss_dssp HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH
Confidence 77778999999999999999999999999999998888888889999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 316 ~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
...+.+++.|++|.|+.+|.++ ++.++..|+|+|+|++.+++++++.+++.|+++.|+.+|.+++++++..|+|+|+|+
T Consensus 332 ~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l 410 (530)
T 1wa5_B 332 LQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA 410 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 8889999999999999999998 999999999999999999899999999999999999999999999999999999999
Q ss_pred hcCCC
Q 015687 396 TSGGS 400 (402)
Q Consensus 396 ~~~~~ 400 (402)
+.+|+
T Consensus 411 ~~~~~ 415 (530)
T 1wa5_B 411 SSGGL 415 (530)
T ss_dssp HHHTT
T ss_pred HhcCC
Confidence 98764
No 4
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.1e-50 Score=391.12 Aligned_cols=371 Identities=47% Similarity=0.789 Sum_probs=310.5
Q ss_pred hHHHHHHHHHHhhhHHHHhhhhccccCCCCCcchhhhhhhhh-ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCch
Q 015687 29 REDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKL-ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPI 107 (402)
Q Consensus 29 r~~~~~~lRk~~r~~~~~~kr~~~~~~~~~~~~~~~~~~~~~-~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~ 107 (402)
|....++.|+++++......++....+++.+..+........ ..++.+++.++|+|++.|+.|+..+|+++|.+++||+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi 93 (510)
T 3ul1_B 14 RGSGMLETAAALFERNHMDSPDLGTDDDDLAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPI 93 (510)
T ss_dssp ---------------------------------------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCH
T ss_pred CCcccHHHHHHHHHhhccCCccccCCccccchhhhccccchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchH
Confidence 334556777777777766666654433332111111111111 2589999999999999999999999999999989999
Q ss_pred hHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCC
Q 015687 108 NEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187 (402)
Q Consensus 108 ~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~ 187 (402)
+.+++.|++|.|+++|++++++.+|.+|+|+|+||++++++++..+++.|++|.|+.+|.+++.+++++|+|+|+||+.+
T Consensus 94 ~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d 173 (510)
T 3ul1_B 94 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 173 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999998766689999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHhcCChHHHHHHhccch----hhHHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHHHhccCCChhHHHHHH
Q 015687 188 SPKCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDAC 262 (402)
Q Consensus 188 ~~~~~~~~~~~g~i~~L~~~l~~~~----~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~ 262 (402)
++.+|+.+.+.|++++|+.++.... ...+++.++|++++++.+. +........+++|.|+.++.+++++++..++
T Consensus 174 ~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~ 253 (510)
T 3ul1_B 174 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 253 (510)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred CHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999999999995432 3457899999999999987 6666677789999999999999999999999
Q ss_pred HHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhH
Q 015687 263 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSI 342 (402)
Q Consensus 263 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v 342 (402)
|+|++++.+.++..+.+.+.|+++.|+.+|.+++..++.+++++|+|++.+++..+..+++.|+++.|..+|.++ ++.+
T Consensus 254 ~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v 332 (510)
T 3ul1_B 254 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNI 332 (510)
T ss_dssp HHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHH
T ss_pred HHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHH
Confidence 999999999988888899999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCCC
Q 015687 343 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 343 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 400 (402)
++.|+|+|+||+.++++++..+++.|++|.|+.++.+++++++++|+|+|+|++.+|+
T Consensus 333 ~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~ 390 (510)
T 3ul1_B 333 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT 390 (510)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999999999999999999998764
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=2.1e-39 Score=308.65 Aligned_cols=327 Identities=62% Similarity=0.968 Sum_probs=302.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhc-CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~-g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
.++.+++.++++++..+..|+..|+++++...+++.+.+++. |+++.|+++|.+++++.++..|+++|++++.++++..
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 378999999999999999999999999875546677778888 9999999999998338999999999999999878888
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
..+++.|++|.|+.+|.++++.+++.|+++|++++.+.+..++.+.+.|+++.++.++..+.+..++..++|+|.+++.+
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 88899999999999999999999999999999999999889999999999999999995557899999999999999988
Q ss_pred C-CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 015687 231 K-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (402)
Q Consensus 231 ~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~n 309 (402)
. +........+++|.|+.++.++|+.++..++|+|.+++...++....+.+.|+++.|+.+|.++++.++..|+++|++
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 6 655666668999999999999999999999999999998887777888899999999999999999999999999999
Q ss_pred hhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHH
Q 015687 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA 389 (402)
Q Consensus 310 l~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 389 (402)
++.+.+...+.+++.|+++.|+.++.++ ++.++..|+|+|+|++.++++.++.+++.|+++.|+.++.+++++++.+|+
T Consensus 261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~ 339 (450)
T 2jdq_A 261 IVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 339 (450)
T ss_dssp HTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred HhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 9999988888899999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCC
Q 015687 390 WAISNATSGG 399 (402)
Q Consensus 390 ~aL~nl~~~~ 399 (402)
|+|+|++.++
T Consensus 340 ~~L~~l~~~~ 349 (450)
T 2jdq_A 340 WAITNATSGG 349 (450)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHcCC
Confidence 9999998764
No 6
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.8e-39 Score=314.65 Aligned_cols=324 Identities=28% Similarity=0.440 Sum_probs=294.0
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 71 ~~i~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
|.+|.|++.|.+ +++.+++.|+++|.++++++ ......+++.|++|.|+.+|.+++ ++++..|+|+|+||+.++++.
T Consensus 119 G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~~ 196 (529)
T 3tpo_A 119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSAF 196 (529)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHHH
Confidence 789999999975 56899999999999998764 556678999999999999999998 999999999999999988999
Q ss_pred hHHHHhCCchHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHH
Q 015687 150 TRVVIDHGAVPIFVRLLSSPT-----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL 224 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L 224 (402)
+..+++.|+++.|+.+|..++ ..+...++|+|.|++.+...........|+++.|+.++ .+++++++..++|+|
T Consensus 197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~aL 275 (529)
T 3tpo_A 197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI 275 (529)
T ss_dssp HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHHH
Confidence 999999999999999998643 45788999999999987765555666677899999999 788899999999999
Q ss_pred HHhhhCCCCC-chhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHH
Q 015687 225 SNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPA 303 (402)
Q Consensus 225 ~~l~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a 303 (402)
++++.+.+.. ......+++|.|+.+|.++++.++..++++|++++.+++.....+++.|+++.|+.+|.++++.++..|
T Consensus 276 ~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a 355 (529)
T 3tpo_A 276 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 355 (529)
T ss_dssp HHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHH
T ss_pred HHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHH
Confidence 9999875322 223347899999999999999999999999999999999888899999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCCH
Q 015687 304 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEF 382 (402)
Q Consensus 304 ~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~ 382 (402)
+++|+|++.+++.+...+++.|++|.|+.++.++ ++.++++|+|+|+|++. ++++++..+++.|+++.|+++|.+.|+
T Consensus 356 ~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~ 434 (529)
T 3tpo_A 356 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 434 (529)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred HHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCH
Confidence 9999999999999999999999999999999999 99999999999999997 688999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 015687 383 EIKKEAAWAISNATSG 398 (402)
Q Consensus 383 ~v~~~a~~aL~nl~~~ 398 (402)
+++..++++|.|+...
T Consensus 435 ~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 435 KIIQVILDAISNIFQA 450 (529)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998753
No 7
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.2e-39 Score=314.19 Aligned_cols=324 Identities=28% Similarity=0.444 Sum_probs=293.5
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 71 ~~i~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
|.+|.|++.|++ +++.+|+.|+++|.++++++ .+..+.+++.|++|.|+++|.+++ ++++..|+|+|+||+.++++.
T Consensus 100 G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~~ 177 (510)
T 3ul1_B 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAF 177 (510)
T ss_dssp THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence 789999999985 56899999999999998765 667788999999999999999988 999999999999999988899
Q ss_pred hHHHHhCCchHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHH
Q 015687 150 TRVVIDHGAVPIFVRLLSSPT-----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL 224 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L 224 (402)
+..+.+.|+++.|+.++.+++ ..+...++|++.|++.+...........|+++.|+.++ .+.+++++..++|+|
T Consensus 178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL 256 (510)
T 3ul1_B 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI 256 (510)
T ss_dssp HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHH
Confidence 999999999999999998754 45778999999999987655555556677899999999 788899999999999
Q ss_pred HHhhhCCCCC-chhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHH
Q 015687 225 SNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPA 303 (402)
Q Consensus 225 ~~l~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a 303 (402)
++|+.+.+.. ......+++|.|+.+|.+.+..++..++++|++++.+++.....+++.|+++.|+.+|.+++..++..|
T Consensus 257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A 336 (510)
T 3ul1_B 257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 336 (510)
T ss_dssp HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHH
T ss_pred HHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHH
Confidence 9999875322 223347899999999999999999999999999999999888899999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCCH
Q 015687 304 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEF 382 (402)
Q Consensus 304 ~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~ 382 (402)
+++|+|++.+++.+...+++.|++|.|+.++.++ ++.++++|+|+|+|++. ++++++..+++.|+++.|+++|.+.|+
T Consensus 337 ~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~ 415 (510)
T 3ul1_B 337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 415 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred HHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCH
Confidence 9999999999999999999999999999999999 99999999999999997 688999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 015687 383 EIKKEAAWAISNATSG 398 (402)
Q Consensus 383 ~v~~~a~~aL~nl~~~ 398 (402)
+++..++++|.|+...
T Consensus 416 ~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 416 KIIQVILDAISNIFQA 431 (510)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998753
No 8
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=8.9e-40 Score=322.06 Aligned_cols=320 Identities=16% Similarity=0.171 Sum_probs=278.1
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHHHHHHhccCCCCchhHHh-hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 73 LPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 73 i~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
++.++++|.++ |++.+..|++.|..+.. . .+....++ +.|++|.|+++|++++ +.+++.|+|+|+||+.++++.
T Consensus 379 v~~l~~lL~~~~~d~~v~~~AveaLayLS~-~-~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~q 455 (810)
T 3now_A 379 AEACRRFLIKPGKDKDIRRWAADGLAYLTL-D-AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEKQ 455 (810)
T ss_dssp HHHHHHHHHCSSCCSSHHHHHHHHHHHHTT-S-HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCCC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHhC-C-cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchhh
Confidence 57788888887 89999999999999943 2 34444444 6899999999999988 899999999999999865321
Q ss_pred --------------------------------hHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHh
Q 015687 150 --------------------------------TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS 197 (402)
Q Consensus 150 --------------------------------~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 197 (402)
.+.+++.|++|.|+.+++++++.++++|+|+|+||+.+. .+|..+++
T Consensus 456 ~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~-~~r~~Vv~ 534 (810)
T 3now_A 456 EMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK-ELRGKVVQ 534 (810)
T ss_dssp CCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH-HHHHHHHH
T ss_pred hhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHH
Confidence 267899999999999999999999999999999999764 58999999
Q ss_pred cCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC-CCCch--hhhhchHHHHHHhccCCC-hhHHHHHHHHHHHhccCCh
Q 015687 198 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLF--EQTRPALPALERLIHSND-DEVLTDACWALSYLSDGTN 273 (402)
Q Consensus 198 ~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~--~~~~~~l~~L~~lL~~~~-~~v~~~a~~~l~~l~~~~~ 273 (402)
.|++++|+.++ .+.+...++.|+|+|.+|+.+. |...+ ....+++|.|+.+|.+++ ......++|+|.||+..++
T Consensus 535 ~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d 613 (810)
T 3now_A 535 EGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNE 613 (810)
T ss_dssp TTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred CCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCH
Confidence 99999999999 6667788999999999999864 22211 123568999999998663 3445789999999999988
Q ss_pred HHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHh-CCChHHHHHHhcCCCchhHHHHHHHHHHH
Q 015687 274 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQNYKKSIKKEACWTISN 352 (402)
Q Consensus 274 ~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~-~~~l~~L~~ll~~~~~~~v~~~a~~~L~n 352 (402)
+..+.+++.|+++.|+.+|.++++.++.+|+++|+|++.+++.+.. +++ .|.++.|+.++.++ +..++++|+|+|+|
T Consensus 614 ~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~-~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALan 691 (810)
T 3now_A 614 SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKM-FEGNNDRVKFLALLCEDE-DEETATACAGALAI 691 (810)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHH-HHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHH-HHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999999999997665444 554 79999999999998 99999999999999
Q ss_pred HhcCCHHHHHHHHH-cCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 353 ITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 353 l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
|+.+++.+++.+++ .|+++.|+++|.++++++++.|+|+|.|++.++
T Consensus 692 Lt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s 739 (810)
T 3now_A 692 ITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAG 739 (810)
T ss_dssp HHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCC
Confidence 99988999999998 899999999999999999999999999999864
No 9
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=2.3e-39 Score=302.95 Aligned_cols=324 Identities=20% Similarity=0.197 Sum_probs=258.2
Q ss_pred hhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCch-hHHhhcCcHHHHHHhhcCCCC-----------HHHHHHH
Q 015687 68 KKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPI-NEVIQSGVVPRFIEFLSRDDF-----------PQLQFEA 135 (402)
Q Consensus 68 ~~~~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~-~~~~~~g~i~~L~~lL~~~~~-----------~~~~~~a 135 (402)
++++.++.++..+.+.|+.. .++++++.+.++++ ..+++.|++|.|+++|+..+. ++++.+|
T Consensus 29 ~~~~~~~~l~~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a 102 (458)
T 3nmz_A 29 TKVEMVYSLLSMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARA 102 (458)
T ss_dssp ----------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHH
T ss_pred chHHHHHHHHHHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHH
Confidence 45577899999999888773 44444444445555 779999999999999997542 6999999
Q ss_pred HHHHHHhhcCCCcchHHHHhCCch----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhCCCchh
Q 015687 136 AWALTNIASGTSENTRVVIDHGAV----------PIFVRLLSSPT--DD-----VRE-------QAVWALGNVAGDSPKC 191 (402)
Q Consensus 136 ~~~L~~l~~~~~~~~~~~~~~g~i----------~~L~~lL~~~~--~~-----v~~-------~a~~~L~nl~~~~~~~ 191 (402)
+|+|+||+.++++.+....+.|++ +.+++++.+.. .+ +++ +|+|+|+|++.+ +++
T Consensus 103 ~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~ 181 (458)
T 3nmz_A 103 SAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEH 181 (458)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHH
Confidence 999999999999999999998888 77777787642 22 555 999999999776 779
Q ss_pred hHHHHhcCChHHHHHHhcc----------chhhHHHHHHHHHHHHhhhCCCCCchhh--hhchHHHHHHhccCCChhHHH
Q 015687 192 RDLVLSNGALMPLLAQFNE----------HAKLSMLRNATWTLSNFCRGKPQPLFEQ--TRPALPALERLIHSNDDEVLT 259 (402)
Q Consensus 192 ~~~~~~~g~i~~L~~~l~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~l~~L~~lL~~~~~~v~~ 259 (402)
|+.+.+.|++++|+.++.. +.++.+++.++|+|.|||.+++...... ..+++|.|+.+|.+++++++.
T Consensus 182 R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~ 261 (458)
T 3nmz_A 182 RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQ 261 (458)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHH
Confidence 9999999999999999942 2457899999999999998864333222 356799999999999999999
Q ss_pred HHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhc-CCCChhhHHHHHHHHHHhhcCChHHHHHHH-hCCChHHHHHHhcC
Q 015687 260 DACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQ 336 (402)
Q Consensus 260 ~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~~L-~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~-~~~~l~~L~~ll~~ 336 (402)
.++|+|.||+.. +++....+.+.|+++.|+.+| .+.+..++..|+.+|+|++.++++....+. ..|++|.|+.+|.+
T Consensus 262 ~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~ 341 (458)
T 3nmz_A 262 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY 341 (458)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcC
Confidence 999999999985 556678889999999999975 667889999999999999996655555565 78999999999987
Q ss_pred CCch----hHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 337 NYKK----SIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 337 ~~~~----~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
+ ++ .+++.|+|+|.||+. +++++++.+++.|+++.|+.+|.+++.+++++|+|+|+|++.+.
T Consensus 342 ~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~ 410 (458)
T 3nmz_A 342 R-SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN 410 (458)
T ss_dssp C-CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSC
T ss_pred C-CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCC
Confidence 7 44 499999999999997 78999999999999999999999999999999999999999653
No 10
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=297.56 Aligned_cols=326 Identities=17% Similarity=0.186 Sum_probs=277.1
Q ss_pred hccHHHHHHhhcCC------------CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcH----------HHHHHhhcCCC
Q 015687 70 LESLPAMVAGVWSD------------DRNIQLDATTQFRKLLSIERSPPINEVIQSGVV----------PRFIEFLSRDD 127 (402)
Q Consensus 70 ~~~i~~l~~~l~s~------------~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i----------~~L~~lL~~~~ 127 (402)
-|.+|.|++.|+.. ++++++.|+++|.++++++ ++..+...+.|++ +.+++++.+..
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 147 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHE 147 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Confidence 38999999999963 3799999999999999986 6666777777777 77778887642
Q ss_pred -CHH-----HHH-------HHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC-----------CCHHHHHHHHHHHHH
Q 015687 128 -FPQ-----LQF-------EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWALGN 183 (402)
Q Consensus 128 -~~~-----~~~-------~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~n 183 (402)
..+ ++. .|+|+|.|++.+ ++++..+++.|++++|+.+|.. .++.++..|+|+|.|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~n 226 (458)
T 3nmz_A 148 PGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTN 226 (458)
T ss_dssp SSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred cccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHH
Confidence 012 333 899999999876 8999999999999999999941 357799999999999
Q ss_pred hhCCCchhhHHHHh-cCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC-C-CCchhhhhchHHHHHHhc-cCCChhHHH
Q 015687 184 VAGDSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-P-QPLFEQTRPALPALERLI-HSNDDEVLT 259 (402)
Q Consensus 184 l~~~~~~~~~~~~~-~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~-~-~~~~~~~~~~l~~L~~lL-~~~~~~v~~ 259 (402)
|+.+++..+..+.. .|+++.|+.+| .+++++++..++|+|.||+... + ........+++|.|+++| .+.++.++.
T Consensus 227 La~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~ 305 (458)
T 3nmz_A 227 LTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLK 305 (458)
T ss_dssp HHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHH
T ss_pred HhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHH
Confidence 99988777766654 56699999999 6788999999999999999752 2 222333478999999975 667899999
Q ss_pred HHHHHHHHhccCChHHHHHHH-HhCcHHHHHHhcCCCCh----hhHHHHHHHHHHhhc---CChHHHHHHHhCCChHHHH
Q 015687 260 DACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLRHPSP----SVLIPALRTVGNIVT---GDDMQTQCIINHQALPCLL 331 (402)
Q Consensus 260 ~a~~~l~~l~~~~~~~~~~~~-~~~~i~~L~~~L~~~~~----~v~~~a~~~l~nl~~---~~~~~~~~i~~~~~l~~L~ 331 (402)
.++.+|.||+.+.++....+. ..|+++.|+.+|.+.++ .++..|+++|.|++. +++++++.+++.|++|.|+
T Consensus 306 ~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv 385 (458)
T 3nmz_A 306 SVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLL 385 (458)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHH
Confidence 999999999985544444555 78999999999987654 489999999999997 7888999999999999999
Q ss_pred HHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 332 DLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 332 ~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
.+|.++ +..++++|+|+|+|++.++++++..+++.|++|.|+++|.++++++++.|+|+|.||+.+.
T Consensus 386 ~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 386 QHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999998 8999999999999999888999999999999999999999999999999999999999864
No 11
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=5.8e-37 Score=291.81 Aligned_cols=324 Identities=27% Similarity=0.380 Sum_probs=289.9
Q ss_pred ccHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 71 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 71 ~~i~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
+.+|.+++.++++ ++..+..|+++|.++.+.. .+....+++.|+++.|+++|++++ +.++..|+++|++++.++++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~ 141 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC 141 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence 5689999999998 8999999999999997653 455667788999999999999988 999999999999999988888
Q ss_pred hHHHHhCCchHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-chhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHh
Q 015687 150 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l 227 (402)
+..+++.|+++.|+.++.+ ++..++..++|+|++++.+. +..+..+ ..++++.|+.++ .+.++.++..++|+|.++
T Consensus 142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l 219 (450)
T 2jdq_A 142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYL 219 (450)
T ss_dssp HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence 9999999999999999995 78999999999999999765 4333333 378999999999 677889999999999999
Q ss_pred hhCCC-CCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHH
Q 015687 228 CRGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306 (402)
Q Consensus 228 ~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~ 306 (402)
+...+ ........+++|.|+.+|.++++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++++.++..|+++
T Consensus 220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~ 299 (450)
T 2jdq_A 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299 (450)
T ss_dssp TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence 98752 22223336899999999999999999999999999999888877888889999999999999999999999999
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHH
Q 015687 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIK 385 (402)
Q Consensus 307 l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 385 (402)
|++++.+++...+.+++.|++|.|+.++.++ ++.+|..|+|+|+|++.+ ++++++.+++.|+++.|+.++.+++++++
T Consensus 300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 378 (450)
T 2jdq_A 300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV 378 (450)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence 9999999988888899999999999999988 999999999999999974 78889999999999999999999999999
Q ss_pred HHHHHHHHHhhcCC
Q 015687 386 KEAAWAISNATSGG 399 (402)
Q Consensus 386 ~~a~~aL~nl~~~~ 399 (402)
..|+++|.+++..+
T Consensus 379 ~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 379 QVALNGLENILRLG 392 (450)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998654
No 12
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.6e-36 Score=294.69 Aligned_cols=324 Identities=27% Similarity=0.398 Sum_probs=293.5
Q ss_pred ccHHHHHHhhcCCC-HHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 71 ESLPAMVAGVWSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 71 ~~i~~l~~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
+.+|.|++.|.+++ +.++..|+++|.++.+.. ......+++.|+++.|+.+|.+++ +.++..|+|+|++|+.+++..
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~ 194 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKC 194 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 67999999999887 999999999999998753 556677889999999999999987 999999999999999988888
Q ss_pred hHHHHhCCchHHHHHhh-CCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhh
Q 015687 150 TRVVIDHGAVPIFVRLL-SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~ 228 (402)
+..+.+.|+++.|+.+| .+.+..++..++|+|++++...+.. ......|+++.|+.++ .+.++.++..++|+|.+++
T Consensus 195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999 6789999999999999999876543 4445688999999999 7788999999999999999
Q ss_pred hCCCCC-chhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC-ChhhHHHHHHH
Q 015687 229 RGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRT 306 (402)
Q Consensus 229 ~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~-~~~v~~~a~~~ 306 (402)
...+.. ......+++|.|+.+|.++++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++ ++.++..|+++
T Consensus 273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~ 352 (528)
T 4b8j_A 273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT 352 (528)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence 774322 2233468999999999999999999999999999998888888899999999999999988 89999999999
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHH
Q 015687 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIK 385 (402)
Q Consensus 307 l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 385 (402)
|+|++.+++.....+++.|++|.|+.+|.++ ++.++..|+|+|+|++.+ +++....+++.|+++.|+.+|.+++++++
T Consensus 353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~ 431 (528)
T 4b8j_A 353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIV 431 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence 9999999888899999999999999999998 999999999999999984 78999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCC
Q 015687 386 KEAAWAISNATSGG 399 (402)
Q Consensus 386 ~~a~~aL~nl~~~~ 399 (402)
..|+++|.+++..+
T Consensus 432 ~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 432 TVCLEGLENILKVG 445 (528)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998644
No 13
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=2.6e-36 Score=293.17 Aligned_cols=325 Identities=27% Similarity=0.376 Sum_probs=291.9
Q ss_pred ccHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 71 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 71 ~~i~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
+.+|.+++.|.++ ++.++..|+++|.++.+.. ......+++.|+++.|+.+|.+++ +.++..|+|+|++++.++++.
T Consensus 130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccc
Confidence 6899999999987 8999999999999997643 445667889999999999999887 999999999999999987888
Q ss_pred hHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
+..+...|+++.|+.++.+++..++..++|+|++++.+...........|+++.|+.++ .+.++.++..++|+|.+|+.
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD 286 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999987622345566688999999999 67789999999999999998
Q ss_pred CCCCC-chhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHH
Q 015687 230 GKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308 (402)
Q Consensus 230 ~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~ 308 (402)
..+.. ......+++|.|+.+|.+.++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++++.++..|+++|+
T Consensus 287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~ 366 (530)
T 1wa5_B 287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 366 (530)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 74322 22223589999999999999999999999999999988888888899999999999999999999999999999
Q ss_pred HhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCH--HHHHHHHHcCCHHHHHHHhccCCHHHH
Q 015687 309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNV--NQIQAIIEAGIIGPLVNLLLNAEFEIK 385 (402)
Q Consensus 309 nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~ 385 (402)
+++.+++.+.+.+++.|++|.|+.+|.++ ++.++..|+|+|+|++. +.+ ++...+++.|+++.|+.++.+++++++
T Consensus 367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 445 (530)
T 1wa5_B 367 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 445 (530)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence 99999888888899999999999999988 99999999999999997 455 788899999999999999999999999
Q ss_pred HHHHHHHHHhhcCC
Q 015687 386 KEAAWAISNATSGG 399 (402)
Q Consensus 386 ~~a~~aL~nl~~~~ 399 (402)
..|+++|.+++..+
T Consensus 446 ~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 446 EVTLDALENILKMG 459 (530)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998653
No 14
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=5e-37 Score=291.50 Aligned_cols=320 Identities=18% Similarity=0.219 Sum_probs=269.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
.+|.+++.|++++++.+..|+.+|+++...+ ++....+.+.|++|.|+++|++++ +.++..|+|+|+||+.++++++.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 5799999999999999999999999986432 344558899999999999999888 99999999999999998899999
Q ss_pred HHHhCCchHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc--------c-------hhhH
Q 015687 152 VVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--------H-------AKLS 215 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~--------~-------~~~~ 215 (402)
.+++.|++|.|+.+|. ++++++++.++|+|+||+.+ +..+..+.+ |++++|+.++.. . .+..
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence 9999999999999999 88999999999999999998 568888888 999999999931 1 3567
Q ss_pred HHHHHHHHHHHhhhCCCCCchhhh-h-chHHHHHHhccC-----------------------------------------
Q 015687 216 MLRNATWTLSNFCRGKPQPLFEQT-R-PALPALERLIHS----------------------------------------- 252 (402)
Q Consensus 216 ~~~~a~~~L~~l~~~~~~~~~~~~-~-~~l~~L~~lL~~----------------------------------------- 252 (402)
+++.++|+|+|||.+ +....... . |++|.|+.+|.+
T Consensus 159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~ 237 (457)
T 1xm9_A 159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence 888999999999986 32222222 2 666666655532
Q ss_pred ----------------------------------------------------------CChhHHHHHHHHHHHhccCChH
Q 015687 253 ----------------------------------------------------------NDDEVLTDACWALSYLSDGTND 274 (402)
Q Consensus 253 ----------------------------------------------------------~~~~v~~~a~~~l~~l~~~~~~ 274 (402)
.++.+++.++|+|+|++.+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~ 317 (457)
T 1xm9_A 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence 2356777789999999976543
Q ss_pred H---H-HHHH-HhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCc------hhHH
Q 015687 275 K---I-QAVI-EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK------KSIK 343 (402)
Q Consensus 275 ~---~-~~~~-~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~------~~v~ 343 (402)
. + +.++ +.|+++.|+.+|.+++..++..|+++|+|++.+. ....++..|++|.|+++|.++ + +++.
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~-~~~~~~~~~v~ 394 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSH-TGNTSNSEDIL 394 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSC-CSCSTTHHHHH
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCC-CCCCCCcHHHH
Confidence 2 2 3344 5799999999999999999999999999999853 344566778999999999876 3 3688
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccC-CHHHHHHHHHHHHHhhcCC
Q 015687 344 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 344 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~ 399 (402)
..++++|.|+..+++++...+.+.|+++.|++++.++ +.++++.|+|+|.|+..+.
T Consensus 395 ~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 395 SSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence 8999999999998899999999999999999999999 8999999999999998764
No 15
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=8.5e-37 Score=300.93 Aligned_cols=326 Identities=14% Similarity=0.098 Sum_probs=280.1
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCC----------------------------c---hhHHhhcCcHHH
Q 015687 70 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSP----------------------------P---INEVIQSGVVPR 118 (402)
Q Consensus 70 ~~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~----------------------------~---~~~~~~~g~i~~ 118 (402)
.+.+|.|++.++++++..++.|+++|.++..+.+.. . ++.+++.|++|.
T Consensus 420 ~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~ 499 (810)
T 3now_A 420 KASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTA 499 (810)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHH
Confidence 367999999999999999999999999998643111 0 267889999999
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhh-HHHH
Q 015687 119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCR-DLVL 196 (402)
Q Consensus 119 L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~-~~~~ 196 (402)
|+.+|.+++ +.++..|+|+|+||+.+ ++++..+++.|++|+|+.+|.++++..++.|+|+|+|++.+. +... ....
T Consensus 500 LV~LL~s~s-~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~ 577 (810)
T 3now_A 500 LCALAKTES-HNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQR 577 (810)
T ss_dssp HHHHHTCCC-HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHH
T ss_pred HHHHHcCCC-HHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchh
Confidence 999999988 99999999999999964 789999999999999999999999999999999999998643 3210 0001
Q ss_pred hcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCC-CchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHH
Q 015687 197 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK 275 (402)
Q Consensus 197 ~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~ 275 (402)
..|++++|+.+|..+.+...+..++|+|.||+...+. .......+++|.|+.+|.++++.++..|+++|+|++.+++..
T Consensus 578 ~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~ 657 (810)
T 3now_A 578 SLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI 657 (810)
T ss_dssp HHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHH
T ss_pred hhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHH
Confidence 2469999999995333444557899999999988532 223334689999999999999999999999999999876644
Q ss_pred HHHHHH-hCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHh-CCChHHHHHHhcCCCchhHHHHHHHHHHHH
Q 015687 276 IQAVIE-AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQNYKKSIKKEACWTISNI 353 (402)
Q Consensus 276 ~~~~~~-~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~-~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl 353 (402)
..+++ .|.++.|+.++.+++..++..|+++|+|++.+++.+.+.+++ .|++|.|+.++.++ ++.+++.|+|+|+|+
T Consensus 658 -~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~-d~~vq~~A~~aL~NL 735 (810)
T 3now_A 658 -KMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP-SPAVQHRGIVIILNM 735 (810)
T ss_dssp -HHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS-SHHHHHHHHHHHHHH
T ss_pred -HHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC-CHHHHHHHHHHHHHH
Confidence 44555 689999999999999999999999999999988888999998 89999999999998 999999999999999
Q ss_pred hcCCHHHHHHHHHcCCHHHHHHHhccC---CHHHHHHHHHHHHHhhcCC
Q 015687 354 TAGNVNQIQAIIEAGIIGPLVNLLLNA---EFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 354 ~~~~~~~~~~l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~nl~~~~ 399 (402)
+.+++++...+++.|+++.|++++... +.++.+.|..+|.++...|
T Consensus 736 ~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 736 INAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp HTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 998899999999999999999999765 6899999999999998655
No 16
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.7e-35 Score=282.56 Aligned_cols=322 Identities=19% Similarity=0.196 Sum_probs=264.4
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcC-CCcc
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG-TSEN 149 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~-~~~~ 149 (402)
+.+|.+++.|.++++..+..|+++|+++.... .++...+++.|+||.|+++|.+++ +.++..|+|+|+||+.+ ++++
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence 57999999999999999999999999997643 677788999999999999999988 99999999999999985 5899
Q ss_pred hHHHHhCCchHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhc-----------------cc
Q 015687 150 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-----------------EH 211 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~-----------------~~ 211 (402)
+..+++.|+||.|+.+|.+ .+.++++.++++|+||+.. +.++..+.+ ++++.|+.++. ..
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999996 6889999999999999985 457777775 57999999762 11
Q ss_pred hhhHHHHHHHHHHHHhhhCCCC-Cchhh----------------------------------------------------
Q 015687 212 AKLSMLRNATWTLSNFCRGKPQ-PLFEQ---------------------------------------------------- 238 (402)
Q Consensus 212 ~~~~~~~~a~~~L~~l~~~~~~-~~~~~---------------------------------------------------- 238 (402)
.++.++.+++++|.||+...+. .....
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 2457777777777777654311 00000
Q ss_pred ----------------------hhchHHHHHHhcc-CCChhHHHHHHHHHHHhccCChH---HHH-HHHHhCcHHHHHHh
Q 015687 239 ----------------------TRPALPALERLIH-SNDDEVLTDACWALSYLSDGTND---KIQ-AVIEAGVCPRLVEL 291 (402)
Q Consensus 239 ----------------------~~~~l~~L~~lL~-~~~~~v~~~a~~~l~~l~~~~~~---~~~-~~~~~~~i~~L~~~ 291 (402)
-.++++.++.+|. +.++.++++|+|+|.||+.+... ..+ .+.+.++++.|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 0123445566664 45688889999999999866421 222 33456889999999
Q ss_pred cCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCC-------chhHHHHHHHHHHHHhcCCHHHHHHH
Q 015687 292 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-------KKSIKKEACWTISNITAGNVNQIQAI 364 (402)
Q Consensus 292 L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~-------~~~v~~~a~~~L~nl~~~~~~~~~~l 364 (402)
|.+++..++..|+++|+|++.+... +.++..|++|.|+.+|.++. ...+...|||+|+||+.+++++.+.+
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~~~~--~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I 441 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVDARN--KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKL 441 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTCSC--HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHhCChhH--HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999999999999987653 34567899999999998762 25688999999999999999999999
Q ss_pred HHcCCHHHHHHHhccC--CHHHHHHHHHHHHHhhcC
Q 015687 365 IEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSG 398 (402)
Q Consensus 365 ~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~ 398 (402)
++.|+++.|+.++.++ .+++++.|+|+|+|++.+
T Consensus 442 ~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 442 RETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp HHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred HHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 9999999999999986 789999999999999864
No 17
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=3.9e-34 Score=260.14 Aligned_cols=268 Identities=19% Similarity=0.193 Sum_probs=234.0
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCCchhhHHHHh
Q 015687 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWALGNVAGDSPKCRDLVLS 197 (402)
Q Consensus 129 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 197 (402)
...+..|+|+|.|++.+ ++++..+++.|+++.|+.+|.. .++.++..|+|+|.||+.+++..+..+..
T Consensus 46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35566899999999987 8999999999999999999942 34789999999999999888777777754
Q ss_pred -cCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC-C-CCchhhhhchHHHHHHhc-cCCChhHHHHHHHHHHHhccCCh
Q 015687 198 -NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-P-QPLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTN 273 (402)
Q Consensus 198 -~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~-~-~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~ 273 (402)
.|+++.|+.+| .+++++++..++|+|.||+... + ........+++|.|+++| .+.+++++..++++|.+|+...+
T Consensus 125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 45699999999 6788999999999999999852 2 222333478999999975 66789999999999999998665
Q ss_pred HHHHHHH-HhCcHHHHHHhcCCCCh----hhHHHHHHHHHHhhc---CChHHHHHHHhCCChHHHHHHhcCCCchhHHHH
Q 015687 274 DKIQAVI-EAGVCPRLVELLRHPSP----SVLIPALRTVGNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE 345 (402)
Q Consensus 274 ~~~~~~~-~~~~i~~L~~~L~~~~~----~v~~~a~~~l~nl~~---~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~ 345 (402)
+....+. ..|+++.|+.+|.+.++ .++..|+++|.|++. +++++++.+.+.|++|.|+.+|.++ +..++++
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~ 282 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN 282 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence 5445555 78999999999987654 489999999999997 7888999999999999999999998 9999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 346 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 346 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
|+|+|+|++.+++++++.+++.|++|.|+++|.++++++++.|+|+|.||+.+.
T Consensus 283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999888999999999999999999999999999999999999999864
No 18
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=2.6e-33 Score=272.14 Aligned_cols=322 Identities=19% Similarity=0.241 Sum_probs=274.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
+.+|.+++.++++++..+..|+.+|.++.... ......+.+.|++|.|++++.+++ +.++..++.+|.+++.++++.+
T Consensus 101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~ 178 (529)
T 1jdh_A 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence 78999999999999999999999999997754 455667789999999999999987 8999999999999999888999
Q ss_pred HHHHhCCchHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 151 RVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
..+.+.|+++.|+.++.+. ....+..++.+|.+++.+ +..+..+.+.|+++.|+.++ .+.++.++..++|+|.+++.
T Consensus 179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~ 256 (529)
T 1jdh_A 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhc
Confidence 9999999999999999864 566778899999999975 45788999999999999999 56688999999999999998
Q ss_pred CCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CChhhHHHHHHHH
Q 015687 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTV 307 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~--~~~~v~~~a~~~l 307 (402)
..+.. ....+++|.|++++.+++++++..++|+|++++.++++....+.+.|+++.|+.+|.+ +++.++..|+++|
T Consensus 257 ~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L 334 (529)
T 1jdh_A 257 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334 (529)
T ss_dssp TCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence 86432 2346899999999999999999999999999999888788889999999999999965 3478999999999
Q ss_pred HHhhcCChH---HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHH
Q 015687 308 GNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 384 (402)
Q Consensus 308 ~nl~~~~~~---~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 384 (402)
+|++.+.+. ....+.+.|++|.|+.+|.++.++.+++.++|+|+|++.+... ...+++.|++|.|+.++.++++++
T Consensus 335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v 413 (529)
T 1jdh_A 335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDT 413 (529)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhh-hHHHHHcCCHHHHHHHHHHHhHHH
Confidence 999986543 3567889999999999999883469999999999999986444 478889999999999999999999
Q ss_pred HHHHHHHHHH--hhcCC
Q 015687 385 KKEAAWAISN--ATSGG 399 (402)
Q Consensus 385 ~~~a~~aL~n--l~~~~ 399 (402)
|++|+|+++| +..++
T Consensus 414 ~~~a~~~l~n~~~~~~~ 430 (529)
T 1jdh_A 414 QRRTSMGGTQQQFVEGV 430 (529)
T ss_dssp C-----------CBTTB
T ss_pred HHHHhcccCchhhhccc
Confidence 9999999998 54443
No 19
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.2e-33 Score=268.27 Aligned_cols=282 Identities=18% Similarity=0.204 Sum_probs=239.8
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHH
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (402)
.+|.|+.+|++++ ++++..|+++|.+++.+++..+..+++.|++|.|+.+|+++++.++..|+|+|.||+.++++.+..
T Consensus 3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4899999999998 899999999999999887788889999999999999999999999999999999999988889999
Q ss_pred HHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhcc--------C--------CChhHH
Q 015687 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--------S--------NDDEVL 258 (402)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~--------~--------~~~~v~ 258 (402)
+.+.|++++|+.+|..+.++++++.++|+|+||+.+. ........+++|.|+.+|. + .++++.
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH-HhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 9999999999999954778999999999999999984 3333333499999999993 2 356778
Q ss_pred HHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhcCC------CChhhHHHHHHHHHHhhcCC-----------------
Q 015687 259 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTGD----------------- 314 (402)
Q Consensus 259 ~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~~L~~------~~~~v~~~a~~~l~nl~~~~----------------- 314 (402)
..++|+|.||+.. ++..+.+.+. |+++.|+.+|.+ .+..+.+.|+.++.|++...
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 8999999999987 6677888887 999999999975 45678889999999986321
Q ss_pred ---------------------------------hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH--
Q 015687 315 ---------------------------------DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN-- 359 (402)
Q Consensus 315 ---------------------------------~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~-- 359 (402)
+...+.+++.|+++.|+.+|.++.++.+++.|+|+|+||+.++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 112234456678999999998775789999999999999986432
Q ss_pred -HH-HHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 360 -QI-QAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 360 -~~-~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
.+ +.++ +.|++|.|+++|.+++++++++|+|+|.|++.+.
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~ 362 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence 23 4455 6899999999999999999999999999998753
No 20
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=3.7e-34 Score=260.32 Aligned_cols=274 Identities=19% Similarity=0.171 Sum_probs=237.1
Q ss_pred HHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCC----------CCHHHHHHHHHHHHHhhcCCCcchHHHH
Q 015687 85 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD----------DFPQLQFEAAWALTNIASGTSENTRVVI 154 (402)
Q Consensus 85 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 154 (402)
...+..|+++|.++. .+ .+..+.+++.|+++.|+.+|..+ +++.++..|+|+|.|++.++++.+..+.
T Consensus 46 ~~~~~~A~~aL~nls-~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~ 123 (354)
T 3nmw_A 46 EHQICPAVCVLMKLS-FD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123 (354)
T ss_dssp GGTHHHHHHHHHHHH-TS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHc-CC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345568999999994 43 57788899999999999999521 1267999999999999998666777775
Q ss_pred h-CCchHHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC-
Q 015687 155 D-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK- 231 (402)
Q Consensus 155 ~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~- 231 (402)
. .|+||.|+.+|.++++++++.|+|+|+||+.. ++..+..+.+.|++++|+.+|..+.+..+++.++++|+||+...
T Consensus 124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 4 46699999999999999999999999999985 56789999999999999998756678899999999999999854
Q ss_pred CCCchhh-hhchHHHHHHhccCCCh----hHHHHHHHHHHHhcc---CChHHHHHHHHhCcHHHHHHhcCCCChhhHHHH
Q 015687 232 PQPLFEQ-TRPALPALERLIHSNDD----EVLTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPA 303 (402)
Q Consensus 232 ~~~~~~~-~~~~l~~L~~lL~~~~~----~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a 303 (402)
....... ..+++|.|+.+|.+.++ +++..++|+|.|++. ..++..+.+.+.|+++.|+.+|.+.+..+++.|
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A 283 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA 283 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHH
Confidence 2222222 47999999999987654 599999999999997 677778889999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 015687 304 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 361 (402)
Q Consensus 304 ~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~ 361 (402)
+++|+|++.+++++.+.+++.|++|.|+.++.++ ++.+++.|+|+|.||+.+++...
T Consensus 284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~~~ 340 (354)
T 3nmw_A 284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPAKY 340 (354)
T ss_dssp HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999988899999999999999999999998 99999999999999999766643
No 21
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=1e-32 Score=273.75 Aligned_cols=317 Identities=19% Similarity=0.241 Sum_probs=272.6
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
+.++.+++.|+++++.++..|+.+|.++.+.. ......+.+.|+++.|+++|.+++ +.++..++.+|.+++.++++.+
T Consensus 98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~ 175 (644)
T 2z6h_A 98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 175 (644)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHH
Confidence 68999999999999999999999999998764 566677889999999999999987 8888889999999998888999
Q ss_pred HHHHhCCchHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 151 RVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
..+.+.|+++.|+.++.+. ...++..++.+|.|++.+ +..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus 176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999875 467889999999999965 45789999999999999999 56689999999999999998
Q ss_pred CCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC--ChhhHHHHHHHH
Q 015687 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTV 307 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~--~~~v~~~a~~~l 307 (402)
..+. .....+++|.|+.+|.+.+++++..++|+|++|+.++++..+.+.+.|+++.|+.+|.+. .+.++..|+++|
T Consensus 254 ~~~~--~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 254 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp GCTT--CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 8633 234468999999999999999999999999999998888788899999999999999763 379999999999
Q ss_pred HHhhcCCh--HH-HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHH
Q 015687 308 GNIVTGDD--MQ-TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 384 (402)
Q Consensus 308 ~nl~~~~~--~~-~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 384 (402)
+|++...+ .. ...+++.|+++.|+++|.++.++.+++.|+|+|+||+.+... ...+++.|+++.|+++|.++++++
T Consensus 332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~~i~~Lv~lL~~~~~~v 410 (644)
T 2z6h_A 332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDT 410 (644)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcCCHHHHHHHHhccchhh
Confidence 99997543 23 334778999999999999873469999999999999987554 488889999999999999888888
Q ss_pred HHHHHHHHHH
Q 015687 385 KKEAAWAISN 394 (402)
Q Consensus 385 ~~~a~~aL~n 394 (402)
|++|+|+++|
T Consensus 411 r~~a~~al~n 420 (644)
T 2z6h_A 411 QRRTSMGGTQ 420 (644)
T ss_dssp TTC-------
T ss_pred hhHhhhcccc
Confidence 8888887777
No 22
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=8.1e-33 Score=264.19 Aligned_cols=291 Identities=18% Similarity=0.200 Sum_probs=242.0
Q ss_pred hHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCC
Q 015687 108 NEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187 (402)
Q Consensus 108 ~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~ 187 (402)
..-...+.++.|+++|.+++ +++|..|+++|.+++.++++++..+++.|+||.|+.+|.+++.++++.|+|+|+||+..
T Consensus 42 ~~~~~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~ 120 (584)
T 3l6x_A 42 PPNWRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFG 120 (584)
T ss_dssp CCCCCCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSS
T ss_pred CCCcccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHcc
Confidence 33446778999999999988 99999999999999998899999999999999999999999999999999999999985
Q ss_pred -CchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhcc---------------
Q 015687 188 -SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--------------- 251 (402)
Q Consensus 188 -~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~--------------- 251 (402)
++.++..+.+.|++++|+.+|....+.++++.++++|++|+... ........+++|.|++++.
T Consensus 121 ~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k 199 (584)
T 3l6x_A 121 RDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCK 199 (584)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHHHTHHHHHHHTHHHHHCCC--------
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHhccHHHHHHHHhccccccccccccccc
Confidence 67899999999999999999965578889999999999999863 3344444678999999871
Q ss_pred ---CCChhHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhcCC------CChhhHHHHHHHHHHhhcCChHH----
Q 015687 252 ---SNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTGDDMQ---- 317 (402)
Q Consensus 252 ---~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~~L~~------~~~~v~~~a~~~l~nl~~~~~~~---- 317 (402)
.++++++.+++++|.||+..+++..+.+++. |+++.|+.++.+ .+...++.|+++|.|++......
T Consensus 200 ~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~ 279 (584)
T 3l6x_A 200 PRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQA 279 (584)
T ss_dssp --CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTC
T ss_pred ccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccch
Confidence 2367999999999999998887766777775 667899999863 46678999999999999752211
Q ss_pred ---------------------HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH---HHHHHHH-HcCCHHH
Q 015687 318 ---------------------TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV---NQIQAII-EAGIIGP 372 (402)
Q Consensus 318 ---------------------~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~---~~~~~l~-~~~~i~~ 372 (402)
...+.+.++++.|+.+|.++.++.+++.|+|+|.||+.+.. ..++..+ +.+++|.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~ 359 (584)
T 3l6x_A 280 ERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSA 359 (584)
T ss_dssp CC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHH
T ss_pred hhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHH
Confidence 11112335567889999654489999999999999998642 2334344 5788999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhcCCC
Q 015687 373 LVNLLLNAEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 373 L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 400 (402)
|+++|.+++.++++.|+|+|.||+.+..
T Consensus 360 Lv~LL~s~~~~v~~~A~~aL~nLs~~~~ 387 (584)
T 3l6x_A 360 IADLLTNEHERVVKAASGALRNLAVDAR 387 (584)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCChh
Confidence 9999999999999999999999998754
No 23
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.5e-31 Score=259.70 Aligned_cols=322 Identities=16% Similarity=0.164 Sum_probs=281.2
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 71 ~~i~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
+.++.+++.|.+ ++++.+..|+..|+++... ..+...+.+.|+++.|+++|.+++ +.++..|+++|.+++.+++..
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~ 135 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence 578999999975 4899999999999998543 357778889999999999999988 999999999999999987788
Q ss_pred hHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
+..+.+.|++|.|+.++.+++.+++..++.+|.+++..++..+..+.+.|+++.++.++....+......++.+|.+++.
T Consensus 136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 215 (529)
T 1jdh_A 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215 (529)
T ss_dssp HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999998888999999999999999999666667788889999999997
Q ss_pred CCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 015687 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~n 309 (402)
...........++++.|+.++.+++++++..++|++.+++....... ...|+++.|+.++.++++.++..|+++|++
T Consensus 216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 292 (529)
T 1jdh_A 216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 64333333447899999999999999999999999999997654321 123789999999999999999999999999
Q ss_pred hhcCChHHHHHHHhCCChHHHHHHhcCC-CchhHHHHHHHHHHHHhcCCHH---HHHHHHHcCCHHHHHHHhccCC-HHH
Q 015687 310 IVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNITAGNVN---QIQAIIEAGIIGPLVNLLLNAE-FEI 384 (402)
Q Consensus 310 l~~~~~~~~~~i~~~~~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~ll~~~~-~~v 384 (402)
++.++++....+.+.|+++.|+.++.+. .++.++..|+++|+|++.++++ ....+++.|+++.|+.+|.+++ +.+
T Consensus 293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v 372 (529)
T 1jdh_A 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372 (529)
T ss_dssp HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHH
Confidence 9998888899999999999999999763 1479999999999999986433 4567889999999999999876 599
Q ss_pred HHHHHHHHHHhhcC
Q 015687 385 KKEAAWAISNATSG 398 (402)
Q Consensus 385 ~~~a~~aL~nl~~~ 398 (402)
+++|+|+|+|++.+
T Consensus 373 ~~~a~~~l~nl~~~ 386 (529)
T 1jdh_A 373 IKATVGLIRNLALC 386 (529)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999975
No 24
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=100.00 E-value=1.2e-30 Score=228.44 Aligned_cols=244 Identities=32% Similarity=0.507 Sum_probs=219.8
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhH
Q 015687 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193 (402)
Q Consensus 114 g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 193 (402)
|.++.|+++|.+++ ++++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.++..++++|++++.+++..+.
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 56899999999998 99999999999999998778999999999999999999999999999999999999998887888
Q ss_pred HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCCh
Q 015687 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 273 (402)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~ 273 (402)
.+.+.|+++.++.++ .+++++++..++++|.+++...+
T Consensus 81 ~~~~~~~i~~l~~ll------------------------------------------~~~~~~v~~~a~~~L~~l~~~~~ 118 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLL------------------------------------------TSTDSEVQKEAARALANIASGPD 118 (252)
T ss_dssp HHHHTTHHHHHHHHT------------------------------------------TCSSHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHCCCHHHHHHHH------------------------------------------cCCCHHHHHHHHHHHHHHHcCCH
Confidence 877776666655555 44556677777777777776666
Q ss_pred HHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHH
Q 015687 274 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353 (402)
Q Consensus 274 ~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl 353 (402)
+....+.+.|+++.|+.++.++++.++..++++|++++.+++.....+.+.|+++.|+.++.++ ++.++..|+|+|+|+
T Consensus 119 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l 197 (252)
T 4hxt_A 119 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANI 197 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHH
Confidence 6667788899999999999999999999999999999999888888899999999999999988 999999999999999
Q ss_pred hcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCCCC
Q 015687 354 TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSS 401 (402)
Q Consensus 354 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~ 401 (402)
+.++++....+.+.|+++.|++++.++++++++.|+|+|.|++.....
T Consensus 198 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 198 ASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp TTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 998899999999999999999999999999999999999999987654
No 25
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.98 E-value=7e-31 Score=264.63 Aligned_cols=317 Identities=19% Similarity=0.248 Sum_probs=270.1
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
+.++.|++.|+++++.++..|+.+|.++.... ......+.+.|+++.|+++|.+++ ..++..++.+|.+++.++++.+
T Consensus 234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~ 311 (780)
T 2z6g_A 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 311 (780)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHH
Confidence 68999999999999999999999999998754 455666778999999999999987 8999999999999998888899
Q ss_pred HHHHhCCchHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 151 RVVIDHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
..+.+.|+++.|+.++++.+ ...++.++.+|.+++... ..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus 312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~ 389 (780)
T 2z6g_A 312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 389 (780)
T ss_dssp HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST-THHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhc
Confidence 99999999999999998754 556778999999999754 4788999999999999999 66688899999999999998
Q ss_pred CCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC-C-hhhHHHHHHHH
Q 015687 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-S-PSVLIPALRTV 307 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~-~-~~v~~~a~~~l 307 (402)
..+. .....+++|.|+.+|.+.++.++..++++|++|+.++++....+++.|+++.|+.+|.+. + +.++..|+++|
T Consensus 390 ~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL 467 (780)
T 2z6g_A 390 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467 (780)
T ss_dssp TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 8633 223468999999999999999999999999999998888888899999999999999753 3 48999999999
Q ss_pred HHhhcCChH---HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHH
Q 015687 308 GNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 384 (402)
Q Consensus 308 ~nl~~~~~~---~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 384 (402)
+|++....+ ....+.+.|+++.|+.+|.++..+.+++.|+|+|+||+.+. .....+++.|+++.|+.+|.++++++
T Consensus 468 ~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~ 546 (780)
T 2z6g_A 468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDT 546 (780)
T ss_dssp HHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH-HHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH-HHHHHHHHCCCHHHHHHHHHhcchhH
Confidence 999876543 23467889999999999998834599999999999999864 44578889999999999998877777
Q ss_pred HHHHHHHHHH
Q 015687 385 KKEAAWAISN 394 (402)
Q Consensus 385 ~~~a~~aL~n 394 (402)
+++|+|+++|
T Consensus 547 ~~~aa~al~n 556 (780)
T 2z6g_A 547 QRRTSMGGTQ 556 (780)
T ss_dssp HHTTC-----
T ss_pred HHHHhhcccc
Confidence 6666666655
No 26
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.98 E-value=1.5e-30 Score=258.10 Aligned_cols=323 Identities=15% Similarity=0.159 Sum_probs=279.6
Q ss_pred ccHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 71 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 71 ~~i~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
+.++.+++.|.++ +++.+..|+..|+++.. . ..+...+.+.|+++.|+++|++++ +.++..|+++|.+++...+..
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~-~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~ 132 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSH-H-REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 132 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-S-HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-C-hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence 4689999999865 89999999999998754 3 346778889999999999999988 999999999999999987788
Q ss_pred hHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
+..+.+.|+++.|+.+|.+++..++..++.+|.+++...+..+..+.+.|+++.|+.++.......++..++.+|.+++.
T Consensus 133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 212 (644)
T 2z6h_A 133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212 (644)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999988888899999999999999999666667888999999999997
Q ss_pred CCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 015687 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~n 309 (402)
...........++++.|+.++.+.+..++..++|+|.+++...... ....++++.|+.+|.++++.++..|+++|++
T Consensus 213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289 (644)
T ss_dssp CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6444344444789999999999999999999999999999754321 1123689999999999999999999999999
Q ss_pred hhcCChHHHHHHHhCCChHHHHHHhcCCCc-hhHHHHHHHHHHHHhcCCH--HH-HHHHHHcCCHHHHHHHhccCC-HHH
Q 015687 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYK-KSIKKEACWTISNITAGNV--NQ-IQAIIEAGIIGPLVNLLLNAE-FEI 384 (402)
Q Consensus 310 l~~~~~~~~~~i~~~~~l~~L~~ll~~~~~-~~v~~~a~~~L~nl~~~~~--~~-~~~l~~~~~i~~L~~ll~~~~-~~v 384 (402)
++.+++..+..+.+.|+++.|+.++.+..+ +.++..|+++|+||+..++ +. ...+++.|+++.|+++|.+++ +.+
T Consensus 290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v 369 (644)
T 2z6h_A 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 369 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence 999888888999999999999999987423 7999999999999997533 23 334778999999999999875 799
Q ss_pred HHHHHHHHHHhhcCC
Q 015687 385 KKEAAWAISNATSGG 399 (402)
Q Consensus 385 ~~~a~~aL~nl~~~~ 399 (402)
+++|+|+|+|++.+.
T Consensus 370 ~~~a~~~L~nLa~~~ 384 (644)
T 2z6h_A 370 IKATVGLIRNLALCP 384 (644)
T ss_dssp HHHHHHHHHHHTTSG
T ss_pred HHHHHHHHHHHccCH
Confidence 999999999998753
No 27
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.97 E-value=3.4e-30 Score=259.68 Aligned_cols=322 Identities=16% Similarity=0.163 Sum_probs=278.0
Q ss_pred ccHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 71 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 71 ~~i~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
+.++.|++.|.++ ++..+..|+.+|+++.. . ..+...+.+.|+++.|+++|++++ +.++..|+++|.+|+...+..
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-~-~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSH-H-REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-S-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-C-chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 4688999999854 89999999999999754 3 355677888999999999999988 999999999999999987888
Q ss_pred hHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
+..+.+.|+++.|+.+|.+++..++..++.+|.+++..+++.+..+.+.|+++.|+.++...........++.+|.+|+.
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 348 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 88898999999999999999999999999999999988888899999999999999999666666677889999999997
Q ss_pred CCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 015687 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~n 309 (402)
...........++++.|+.++.+.++.++..++|+|.+++...... ....++++.|+.+|.+.++.++..|+++|++
T Consensus 349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6433333344789999999999999999999999999999765421 1124688999999999999999999999999
Q ss_pred hhcCChHHHHHHHhCCChHHHHHHhcCCCc-hhHHHHHHHHHHHHhcCCHH---HHHHHHHcCCHHHHHHHhccCCH-HH
Q 015687 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYK-KSIKKEACWTISNITAGNVN---QIQAIIEAGIIGPLVNLLLNAEF-EI 384 (402)
Q Consensus 310 l~~~~~~~~~~i~~~~~l~~L~~ll~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~ll~~~~~-~v 384 (402)
++.+++.....+.+.|+++.|+.+|.+..+ +.++..|+|+|+||+..+++ ....+.+.|+++.|+.+|.+++. .+
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v 505 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 505 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence 999988889999999999999999976313 48999999999999975433 23467789999999999998774 99
Q ss_pred HHHHHHHHHHhhcC
Q 015687 385 KKEAAWAISNATSG 398 (402)
Q Consensus 385 ~~~a~~aL~nl~~~ 398 (402)
+++|+|+|+|++.+
T Consensus 506 ~~~A~~aL~nLa~~ 519 (780)
T 2z6g_A 506 IKATVGLIRNLALC 519 (780)
T ss_dssp HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999864
No 28
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.97 E-value=2.6e-30 Score=226.52 Aligned_cols=239 Identities=35% Similarity=0.556 Sum_probs=220.2
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhH
Q 015687 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193 (402)
Q Consensus 114 g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 193 (402)
...+.++..|.+++ ++++..|+++|.++.+.+++.+..+++.|+++.|+.+|.++++.++..|+++|++++.+.+..+.
T Consensus 12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 35899999999998 89999999999887766678888999999999999999999999999999999999998888999
Q ss_pred HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCC-chhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCC
Q 015687 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (402)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~ 272 (402)
.+.+.|+++.|+.++ .++++.++..++|+|.+++.+.+.. ......+++|.|+.+|.++++.++..++|+|++++...
T Consensus 91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6678999999999999999886443 34445789999999999999999999999999999988
Q ss_pred hHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHH
Q 015687 273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352 (402)
Q Consensus 273 ~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~n 352 (402)
++....+.+.|+++.|+.+|.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++ ++.++..|+|+|+|
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999998998999999999999999999998 99999999999999
Q ss_pred Hhc
Q 015687 353 ITA 355 (402)
Q Consensus 353 l~~ 355 (402)
|+.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 975
No 29
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.97 E-value=8e-30 Score=223.42 Aligned_cols=239 Identities=35% Similarity=0.515 Sum_probs=218.5
Q ss_pred CchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC-CCc
Q 015687 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPL 235 (402)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~ 235 (402)
..++.++..|.+++++++..|+++|.++....+..+..+.+.|+++.|+.++ .++++.++..++|+|.+++.+.+ ...
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4689999999999999999999999887665666788899999999999999 66779999999999999998653 233
Q ss_pred hhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 015687 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 315 (402)
Q Consensus 236 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~ 315 (402)
.....+++|.|+.+|.++++.++..++++|++++...+.....+.+.|+++.|+.+|.++++.++..|+++|++++.+++
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 33347899999999999999999999999999999888776889999999999999999999999999999999999998
Q ss_pred HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 316 ~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
.....+.+.|++|.|+.++.++ ++.++..|+|+|+|++.++++....+++.|+++.|+.++.+++++++..|+|+|.|+
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8888899999999999999998 999999999999999998899999999999999999999999999999999999999
Q ss_pred hc
Q 015687 396 TS 397 (402)
Q Consensus 396 ~~ 397 (402)
+.
T Consensus 250 ~~ 251 (252)
T 4db8_A 250 QS 251 (252)
T ss_dssp C-
T ss_pred hc
Confidence 85
No 30
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.97 E-value=6.6e-29 Score=217.40 Aligned_cols=241 Identities=29% Similarity=0.465 Sum_probs=217.5
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
+.++.+++.|++++++.+..|++.|.++.+.. ......+++.|+++.|+++|.+++ +.++..|+++|++++.++++.+
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHHH
Confidence 56899999999999999999999999997654 346778899999999999999988 9999999999999999889999
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
..+.+.|+++.|+.++.+++++++..|+++|++++...+..+..+.+.|+++.|+.++
T Consensus 80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l---------------------- 137 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL---------------------- 137 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT----------------------
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH----------------------
Confidence 9999999999999999999999999999999999988777777777777777777766
Q ss_pred CCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 015687 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (402)
Q Consensus 231 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl 310 (402)
.++++.++..++++|++++...+...+.+.+.|+++.|+.++.++++.++..|+++|+++
T Consensus 138 --------------------~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 197 (252)
T 4hxt_A 138 --------------------TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 197 (252)
T ss_dssp --------------------TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred --------------------cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 235677888888888888877777777888999999999999999999999999999999
Q ss_pred hcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 015687 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (402)
Q Consensus 311 ~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 356 (402)
+.+++.....+.+.|+++.|+.++.++ ++.+++.|+|+|+|++..
T Consensus 198 ~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 198 ASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALENIKSG 242 (252)
T ss_dssp TTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHHHHcC
Confidence 998888899999999999999999988 999999999999999974
No 31
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.4e-26 Score=220.07 Aligned_cols=320 Identities=11% Similarity=0.136 Sum_probs=256.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHh-hcCcHHHHHHhhcC-CCCHHHHHHHHHHHHHhhcCCCc--
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSR-DDFPQLQFEAAWALTNIASGTSE-- 148 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~i~~L~~lL~~-~~~~~~~~~a~~~L~~l~~~~~~-- 148 (402)
.+.+.+.|.+++.+.+..|+..|..+ +.. ......+. +.|+++.|+++++. .+ ..+.+.++.+|.|++...+.
T Consensus 336 a~~~~~~L~~~~~~~~~~AvEgLaYL-Sl~-~~VKe~L~~d~~~L~~Lv~llk~~~d-~s~~Ygal~IL~NLt~~~~~~~ 412 (778)
T 3opb_A 336 SEIFINAISRRIVPKVEMSVEALAYL-SLK-ASVKIMIRSNESFTEILLTMIKSQKM-THCLYGLLVIMANLSTLPEEXX 412 (778)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHH-TTS-SHHHHHHHHCHHHHHHHHHHHTTTCC-TTHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHH-hCC-HHHHHHHHhCHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCCcccc
Confidence 46677788887777799999999998 432 33333444 56789999999996 45 78999999999999975431
Q ss_pred ------------------------------------chHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhh
Q 015687 149 ------------------------------------NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (402)
Q Consensus 149 ------------------------------------~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (402)
.+..+.+.|++|.|+.++.++++.+++.++|+|+||+.+ +..|
T Consensus 413 ~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R 491 (778)
T 3opb_A 413 XXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFI 491 (778)
T ss_dssp CCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGH
T ss_pred hhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHH
Confidence 345678899999999999999999999999999999977 5689
Q ss_pred HHHHhcCChHHHHHHhccchhh--HHHHHHHHHHHHhhhCC-CCCchh--hhhchHHHHHHhccC-CCh-----------
Q 015687 193 DLVLSNGALMPLLAQFNEHAKL--SMLRNATWTLSNFCRGK-PQPLFE--QTRPALPALERLIHS-NDD----------- 255 (402)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~--~~~~~a~~~L~~l~~~~-~~~~~~--~~~~~l~~L~~lL~~-~~~----------- 255 (402)
..+.++|++++|+.++....+. ..+..|+.+|.+++... |...+. ...+++|.|+.+|.. ++.
T Consensus 492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~ 571 (778)
T 3opb_A 492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI 571 (778)
T ss_dssp HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence 9999999999999999655433 37899999999999653 221111 113899999999983 211
Q ss_pred --hHHHHHHHHHHHhccCCh----HHHHHHHHh-CcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhC----
Q 015687 256 --EVLTDACWALSYLSDGTN----DKIQAVIEA-GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH---- 324 (402)
Q Consensus 256 --~v~~~a~~~l~~l~~~~~----~~~~~~~~~-~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~---- 324 (402)
--...|+.+|.||+..++ +....++.. |+++.|..+|.+++..++..|+++++|++.+.....+.+.+.
T Consensus 572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~ 651 (778)
T 3opb_A 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ 651 (778)
T ss_dssp CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence 126799999999998762 334567774 999999999999999999999999999998554221334332
Q ss_pred --CChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHHhcc--CCHHHHHHHHHHHHHhhc
Q 015687 325 --QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA-GIIGPLVNLLLN--AEFEIKKEAAWAISNATS 397 (402)
Q Consensus 325 --~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~ 397 (402)
+.++.|+.++.++ +..+|+.|+|+|+|++.+++...+.+++. ++++.++.++.+ ++++++..++.++.|++.
T Consensus 652 ~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 652 SLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred hhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 2388999999988 99999999999999988778888888875 799999999999 899999999999999996
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.94 E-value=1.9e-25 Score=189.88 Aligned_cols=200 Identities=36% Similarity=0.530 Sum_probs=181.4
Q ss_pred hcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCC-chhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHH
Q 015687 197 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK 275 (402)
Q Consensus 197 ~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~ 275 (402)
..|..+.|+.++ .++++.++..++|+|.+++...+.. ......+++|.|+.+|.+++++++..++++|++++.+.++.
T Consensus 10 ~~~~~~~l~~LL-~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQL-NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHh-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 456888999999 7889999999999999999775322 23344689999999999999999999999999999888888
Q ss_pred HHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 276 IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 276 ~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
...+++.|+++.|+.+|.++++.++..|+++|+|++.+++.....+++.|+++.|+.++.++ ++.++..|+|+|+|++.
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence 88899999999999999999999999999999999999998888899999999999999998 99999999999999999
Q ss_pred CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 356 GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 356 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
++++....+.+.|+++.|+.++.++++++++.|+++|.+++.+
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999863
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.94 E-value=3.9e-25 Score=187.99 Aligned_cols=199 Identities=33% Similarity=0.526 Sum_probs=181.2
Q ss_pred hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 015687 112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191 (402)
Q Consensus 112 ~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 191 (402)
..|..+.|+.+|++++ +.++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.++..|+++|+|++.+.+..
T Consensus 10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 4678999999999988 999999999999999888899999999999999999999999999999999999999888888
Q ss_pred hHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCC-chhhhhchHHHHHHhccCCChhHHHHHHHHHHHhcc
Q 015687 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 270 (402)
Q Consensus 192 ~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~ 270 (402)
+..+.+.|+++.|+.++ .++++.++..++|+|.+++.+.+.. ......+++|.|+.++.+++++++..++++|.+++.
T Consensus 89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999 7778999999999999999865322 223347899999999999999999999999999999
Q ss_pred CChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 015687 271 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 271 ~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
.+++....+.+.|+++.|+.++.++++.++..|+++|++++.
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 878888889999999999999999999999999999999975
No 34
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.93 E-value=8.6e-25 Score=193.53 Aligned_cols=226 Identities=17% Similarity=0.147 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHH
Q 015687 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ 207 (402)
Q Consensus 129 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~ 207 (402)
.+-+..|+..|.+++.. .++...+.+.|++|.|+. +|.++++.+++.|+|+|+|++.+++.+++.+++.|++++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 46788999999999985 668888899999999999 9999999999999999999999999999999999999999999
Q ss_pred hccchhhHHHHHHHHHHHHhhhCCCCCc-hhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 015687 208 FNEHAKLSMLRNATWTLSNFCRGKPQPL-FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 286 (402)
Q Consensus 208 l~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~ 286 (402)
|..+++..+++.++|+|++++++.+... .....+++|.|+.+|++++..++..++|+|++++.++++.++.+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 9555678999999999999999864322 233368999999999999999999999999999988888889999999999
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhC--CC---hHHHHHHhcCCC-chhHHHHHHHHHHHHhc
Q 015687 287 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH--QA---LPCLLDLLTQNY-KKSIKKEACWTISNITA 355 (402)
Q Consensus 287 ~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~--~~---l~~L~~ll~~~~-~~~v~~~a~~~L~nl~~ 355 (402)
.|+.+|.+++..+++.|+++|++++.+.+......-.. .+ +..-..-+++.+ ..++.+.+..++-++..
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999865433322211 11 112233333221 24556666666665553
No 35
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.92 E-value=3.3e-24 Score=189.76 Aligned_cols=187 Identities=14% Similarity=0.179 Sum_probs=168.7
Q ss_pred hhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHH-hccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH
Q 015687 212 AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER-LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 290 (402)
Q Consensus 212 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ 290 (402)
.+.+-+..|+..|.+++...+........|++|.++. +|.++++.++..|+|+|++++.+++...+.+++.|+++.|+.
T Consensus 52 ~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 52 ADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 3456678888999999876433332334688999999 999999999999999999999988888888999999999999
Q ss_pred hcCC-CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 015687 291 LLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 369 (402)
Q Consensus 291 ~L~~-~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 369 (402)
+|.+ ++..++..|+|+|+|++.+++...+.+.+.|++|.|+.+|.++ ++.++..|+|+|+|++.++++.+..+++.|+
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~ 210 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 210 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence 9985 4789999999999999999988888899999999999999998 9999999999999999988999999999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 370 IGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 370 i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
++.|+.+|.+++++++..|+++|+||+.++
T Consensus 211 i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 211 VQQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999874
No 36
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.90 E-value=1.9e-23 Score=176.99 Aligned_cols=197 Identities=19% Similarity=0.141 Sum_probs=171.4
Q ss_pred cHHHHHHhhcCCCCH--HHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhh
Q 015687 115 VVPRFIEFLSRDDFP--QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (402)
.+|.|+++|.+++ + +++..|+++|.+++.++++++..+++.|+||.|+++|.++++++++.|+|+|.||+.++++.+
T Consensus 9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 4899999999988 6 899999999999998888999999999999999999999999999999999999999888899
Q ss_pred HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhcc----------------CCChh
Q 015687 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----------------SNDDE 256 (402)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~----------------~~~~~ 256 (402)
..+.+.|++++|+.+|..+.+.++++.++.+|+||+..... ......+++|.|+.++. ..+++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~-k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL-KNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGG-HHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhh-HHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999995567889999999999999977433 33444678999988763 13679
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhcCC------CChhhHHHHHHHHHHhhcC
Q 015687 257 VLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTG 313 (402)
Q Consensus 257 v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~~L~~------~~~~v~~~a~~~l~nl~~~ 313 (402)
+++++..+|.||+..+++..+.+.+. |+++.|+.+++. .+.+.++.|+.+|.|++..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998776677778776 778999999853 3567899999999999864
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5.6e-22 Score=192.20 Aligned_cols=314 Identities=15% Similarity=0.129 Sum_probs=243.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
.++.|.+.+++ ...+..|+..|+++.+..+... ..+. ...+.+.++|.+++ .+-+..|++.|..++.+ ++.+.
T Consensus 297 ~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~-~si~--~La~~~~~~L~~~~-~~~~~~AvEgLaYLSl~-~~VKe 369 (778)
T 3opb_A 297 YLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTC-INLK--QLSEIFINAISRRI-VPKVEMSVEALAYLSLK-ASVKI 369 (778)
T ss_dssp HHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTT-CCHH--HHHHHHHHHTTTCC-HHHHHHHHHHHHHHTTS-SHHHH
T ss_pred HHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCc-CcHH--HHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCC-HHHHH
Confidence 34666666654 4678889999999876542221 1122 26788889998876 56699999999999886 77777
Q ss_pred HHHhC-CchHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCch--------------------------------------h
Q 015687 152 VVIDH-GAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPK--------------------------------------C 191 (402)
Q Consensus 152 ~~~~~-g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~--------------------------------------~ 191 (402)
.+.+. |+++.|+.++++ .+..+...++.+|.|++.+.+. .
T Consensus 370 ~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~ 449 (778)
T 3opb_A 370 MIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFN 449 (778)
T ss_dssp HHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHH
Confidence 77765 669999999995 7788899999999999864431 3
Q ss_pred hHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChh---HHHHHHHHHHHh
Q 015687 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDE---VLTDACWALSYL 268 (402)
Q Consensus 192 ~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~---v~~~a~~~l~~l 268 (402)
+..+.+.|+++.|+.++ .+.++.++..++|+|.+|+..........-.|+++.|+++|.+.... .+..|+.+|+++
T Consensus 450 ~~~l~eaGvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL 528 (778)
T 3opb_A 450 EKYILRTELISFLKREM-HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM 528 (778)
T ss_dssp HHHTTTTTHHHHHHHHG-GGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 45678899999999999 77889999999999999997754444555589999999999877544 899999999999
Q ss_pred ccCChHHHHHHHH----hCcHHHHHHhcCC-CCh-------------hhHHHHHHHHHHhhcCCh----HHHHHHHhC-C
Q 015687 269 SDGTNDKIQAVIE----AGVCPRLVELLRH-PSP-------------SVLIPALRTVGNIVTGDD----MQTQCIINH-Q 325 (402)
Q Consensus 269 ~~~~~~~~~~~~~----~~~i~~L~~~L~~-~~~-------------~v~~~a~~~l~nl~~~~~----~~~~~i~~~-~ 325 (402)
+...+... ++. .|++++|+.+|.. +.. --+.+|+.+|+|++..++ +....++.. |
T Consensus 529 lis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~g 606 (778)
T 3opb_A 529 LIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKV 606 (778)
T ss_dssp HHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHH
T ss_pred HhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcC
Confidence 85443221 221 3899999999983 221 126789999999999862 345668885 9
Q ss_pred ChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHH-HHHHHc------CCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 326 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI-QAIIEA------GIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 326 ~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~-~~l~~~------~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
++|.|..+|.++ ++.+|+.|+|+++|++.+ ++.+ +.+.+. +.++.|+.++..+|.++|.+|+|+|+|+++
T Consensus 607 a~~~L~~LL~s~-n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 607 YWSTIENLMLDE-NVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683 (778)
T ss_dssp HHHHHHHGGGCS-SHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 999999999988 899999999999999984 5544 344322 237899999999999999999999999974
No 38
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.88 E-value=1.9e-22 Score=170.93 Aligned_cols=196 Identities=18% Similarity=0.185 Sum_probs=165.5
Q ss_pred cHHHHHHhhcCCCH--HHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 72 SLPAMVAGVWSDDR--NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 72 ~i~~l~~~l~s~~~--~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
.+|.+++.|+++++ +.+..|+..++++.... +++...+++.|++|.|+++|.+++ +++|..|+|+|+||+.+++++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence 68999999999988 88999999999986543 567778999999999999999988 999999999999999988999
Q ss_pred hHHHHhCCchHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc---------------chh
Q 015687 150 TRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE---------------HAK 213 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~---------------~~~ 213 (402)
+..+.+.|+||.|+.+|. +++.+++++|+.+|+||+.... ++..+.+. ++++|+.++.. ..+
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHhc-cHHHHHHHHhccccCCcccccccccccch
Confidence 999999999999999998 5799999999999999997654 57777764 69999886520 126
Q ss_pred hHHHHHHHHHHHHhhhCCC-CCchhh-hhchHHHHHHhccC------CChhHHHHHHHHHHHhccC
Q 015687 214 LSMLRNATWTLSNFCRGKP-QPLFEQ-TRPALPALERLIHS------NDDEVLTDACWALSYLSDG 271 (402)
Q Consensus 214 ~~~~~~a~~~L~~l~~~~~-~~~~~~-~~~~l~~L~~lL~~------~~~~v~~~a~~~l~~l~~~ 271 (402)
+.++.+++++|.||+...+ ...... ..|+++.|+.+++. .+...+++++.+|.||+..
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 6899999999999998752 222222 25789999999965 2668899999999999864
No 39
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.79 E-value=7.1e-19 Score=180.08 Aligned_cols=316 Identities=16% Similarity=0.186 Sum_probs=228.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhH-H---hhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCC
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINE-V---IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 147 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~-~---~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~ 147 (402)
-++.+++.+.++++..+..++.+|..++... .+.... . .-..+++.|++++.+++ +.++..|+++|.++....+
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~-~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDS-AEILDSDVLDRPLNIMIPKFLQFFKHSS-PKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHH-TTHHHHCSSSSCHHHHHHHHTTTTTCSS-HHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-HHHhchhhhcchHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhccc
Confidence 4788888999999999999999999886532 121111 0 01236788888888877 8999999999998886543
Q ss_pred cchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHh
Q 015687 148 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (402)
Q Consensus 148 ~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l 227 (402)
......+ .++++.+..++.++++.++..++++|++++...+..-...+. ++++.++..+ .+.++.++..+++++..+
T Consensus 207 ~~~~~~~-~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~-~~~~~~vr~~a~e~l~~l 283 (852)
T 4fdd_A 207 QALMLHI-DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRT-QDQDENVALEACEFWLTL 283 (852)
T ss_dssp HHHHTSH-HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHc-cCCcHHHHHHHHHHHHHH
Confidence 2211111 257888999999999999999999999999766543111111 3566777777 667889999999999999
Q ss_pred hhCCCCCc--hhhhhchHHHHHHhcc-----------C-----------CChhHHHHHHHHHHHhccCChHHHHHHHHhC
Q 015687 228 CRGKPQPL--FEQTRPALPALERLIH-----------S-----------NDDEVLTDACWALSYLSDGTNDKIQAVIEAG 283 (402)
Q Consensus 228 ~~~~~~~~--~~~~~~~l~~L~~lL~-----------~-----------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 283 (402)
+....... ......++|.++..+. + .+..++..+..++..++....+. ++ ..
T Consensus 284 ~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~ 359 (852)
T 4fdd_A 284 AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PH 359 (852)
T ss_dssp TTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-HH
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HH
Confidence 97631111 1233567777777772 2 12246888888888887543221 11 23
Q ss_pred cHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 015687 284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA 363 (402)
Q Consensus 284 ~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 363 (402)
+++.+...+.++++.+|..|++++|+++.+........+ .+++|.++..+.++ ++.||..|+|++++++...+.....
T Consensus 360 l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~ 437 (852)
T 4fdd_A 360 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPPD 437 (852)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhccchHH
Confidence 577888888999999999999999999998875444322 37889999999988 9999999999999998632221111
Q ss_pred HHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 364 IIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 364 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
..-.++++.|+..+.++++.++..|+++|.+++.+
T Consensus 438 ~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 438 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 11234788999999999999999999999999864
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.77 E-value=2.6e-16 Score=148.91 Aligned_cols=322 Identities=16% Similarity=0.129 Sum_probs=249.4
Q ss_pred ccHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCC-CCHHHHHHHHHHHHHhhcCCCc
Q 015687 71 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTNIASGTSE 148 (402)
Q Consensus 71 ~~i~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~~~~~~a~~~L~~l~~~~~~ 148 (402)
+.|+.|+..+.+. -.+-+..|+..|+.+.. + ....+-.++++.|+..|+.+ ++.++...++.+|.++....++
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk----~-y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSK----K-YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTT----T-TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHH----H-hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 5688999999864 57899999999999842 1 22333455799999999764 3478888899999887764332
Q ss_pred -----------------chHHH-HhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch-hhHHHHhc-CChHHHHHHh
Q 015687 149 -----------------NTRVV-IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK-CRDLVLSN-GALMPLLAQF 208 (402)
Q Consensus 149 -----------------~~~~~-~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~~-g~i~~L~~~l 208 (402)
+++.+ -+.+.|+.|+.+|++.+..+|..++.+|..|+...+. .++.++.. ++++.|+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 12233 3457899999999999999999999999999988876 77777744 9999999999
Q ss_pred ccchhhHHHHHHHHHHHHhhhCCCCCchhh-hhchHHHHHHhccCCC----hhHHHHHHHHHHHhccCChHHHHHHHHhC
Q 015687 209 NEHAKLSMLRNATWTLSNFCRGKPQPLFEQ-TRPALPALERLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAG 283 (402)
Q Consensus 209 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~l~~L~~lL~~~~----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 283 (402)
.+....++..++..|.+|+.+++..+... ..++++.|+.++..+. ..+..+++.++.+|...+......+.+.|
T Consensus 176 -~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~ 254 (651)
T 3grl_A 176 -ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS 254 (651)
T ss_dssp -GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred -hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 66778899999999999999975544443 3699999999997654 47889999999999999887778899999
Q ss_pred cHHHHHHhcCCCChh------hHH---HHHHHHHHhhcCC------hHHHHHHHhCCChHHHHHHhcCCC-chhHHHHHH
Q 015687 284 VCPRLVELLRHPSPS------VLI---PALRTVGNIVTGD------DMQTQCIINHQALPCLLDLLTQNY-KKSIKKEAC 347 (402)
Q Consensus 284 ~i~~L~~~L~~~~~~------v~~---~a~~~l~nl~~~~------~~~~~~i~~~~~l~~L~~ll~~~~-~~~v~~~a~ 347 (402)
+++.|..+|..+.+. ... .++.++.-++..+ ......+.+.|+++.|++++.++. ...++.+|.
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al 334 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI 334 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence 999999999754321 222 3667777777652 234566789999999999987542 457999999
Q ss_pred HHHHHHhcCCHHHHHHHHHcC---------CHHHHHHHhcc-CCHHHHHHHHHHHHHhhcC
Q 015687 348 WTISNITAGNVNQIQAIIEAG---------IIGPLVNLLLN-AEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 348 ~~L~nl~~~~~~~~~~l~~~~---------~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~ 398 (402)
.+++.+..+++.....+.+.. ++..|+.++.+ ...++|.+|+.++..+..+
T Consensus 335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~ 395 (651)
T 3grl_A 335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYK 395 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhC
Confidence 999999999988777776532 33444444544 4589999999999888754
No 41
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.76 E-value=8.1e-17 Score=142.83 Aligned_cols=229 Identities=14% Similarity=0.145 Sum_probs=175.3
Q ss_pred hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 015687 112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191 (402)
Q Consensus 112 ~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 191 (402)
..+.++.|+..|.+++ +.++..|+++|+++.. .++++.|+.++.++++.++..|+++|+.+.......
T Consensus 21 ~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~ 88 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHN-SLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE 88 (280)
T ss_dssp HTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred HHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence 4567899999999887 8999999999998863 246889999999999999999999999986433221
Q ss_pred hHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccC
Q 015687 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG 271 (402)
Q Consensus 192 ~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~ 271 (402)
. . .++.+...+..++++.++..++++|..+....+ .....+++.|..++.++++.++..++++|+++..
T Consensus 89 ~-~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~- 157 (280)
T 1oyz_A 89 D-N-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND- 157 (280)
T ss_dssp H-H-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred h-H-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-
Confidence 1 1 223333333367788999999999999986432 1234678889999999999999999999988753
Q ss_pred ChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 015687 272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (402)
Q Consensus 272 ~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 351 (402)
.+.++.|+.++.++++.++..|+++|+.+....+ .+++.|..++.++ ++.+|..|+++|+
T Consensus 158 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL~ 217 (280)
T 1oyz_A 158 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGLS 217 (280)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 2468889999999999999999999999854333 3467888888888 8899999999999
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 015687 352 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 352 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 396 (402)
++.. ...++.|+..+.+++ ++..|+++|+.+.
T Consensus 218 ~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 218 YRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELG 249 (280)
T ss_dssp HTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHC
T ss_pred HhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcC
Confidence 8852 236777777776543 7778888887764
No 42
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.76 E-value=2e-16 Score=140.23 Aligned_cols=255 Identities=15% Similarity=0.123 Sum_probs=202.2
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
..++.+++.|.++++..+..|+..|..+.. .+.++.|+.++.+++ +.++..|+++|+.+... +...
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~-~~~~ 88 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKIC-KKCE 88 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCC-TTTH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccc-cccc
Confidence 478999999999999999999999998841 235889999999988 89999999999998753 2211
Q ss_pred HHHHhCCchHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 151 RVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 151 ~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
. .+++.|.. +++++++.++..++++|+++....+... ...++.|+..+ .++++.++..++++|.++..
T Consensus 89 ~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 89 D-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITA-FDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp H-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred h-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC
Confidence 1 13445543 5678999999999999999975433221 12577888888 78899999999999998764
Q ss_pred CCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 015687 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~n 309 (402)
. ..+|.|..++.++++.++..++++|+.+....+ .+++.|+..+.++++.++..|+++|++
T Consensus 158 ~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 158 K----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred H----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2 478999999999999999999999999854333 246789999999999999999999999
Q ss_pred hhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHH
Q 015687 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEA 388 (402)
Q Consensus 310 l~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a 388 (402)
+.. ...++.|...+.++ + ++..++++|+.+.. + .++|.|..++.+ .++++...+
T Consensus 219 ~~~-----------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~--~---------~~~~~L~~~l~~~~~~~~~~~~ 273 (280)
T 1oyz_A 219 RKD-----------KRVLSVLCDELKKN-T--VYDDIIEAAGELGD--K---------TLLPVLDTMLYKFDDNEIITSA 273 (280)
T ss_dssp TTC-----------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC--G---------GGHHHHHHHHTTSSCCHHHHHH
T ss_pred hCC-----------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc--h---------hhhHHHHHHHhcCCCcHHHHHH
Confidence 862 35788999999765 3 89999999999853 2 478899999965 567888888
Q ss_pred HHHHHH
Q 015687 389 AWAISN 394 (402)
Q Consensus 389 ~~aL~n 394 (402)
..+|.+
T Consensus 274 ~~~l~~ 279 (280)
T 1oyz_A 274 IDKLKR 279 (280)
T ss_dssp HHHHTC
T ss_pred HHHhhc
Confidence 887754
No 43
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.75 E-value=4.8e-17 Score=166.55 Aligned_cols=309 Identities=14% Similarity=0.169 Sum_probs=231.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHH
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 153 (402)
+.+++.+.++++.++..++.++..++..+ .+ .. -.++++.|++.+.+++ +.++..++.+|+.++...+.....-
T Consensus 93 ~~ll~~l~~~~~~vr~~~a~~i~~ia~~~-~~--~~--wp~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~~ 166 (852)
T 4fdd_A 93 SECLNNIGDSSPLIRATVGILITTIASKG-EL--QN--WPDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDSD 166 (852)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHHHT-TT--TT--CTTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhc-Cc--cc--cHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhchh
Confidence 56777888888999999999999998754 11 11 2457999999999988 8999999999999987544332110
Q ss_pred H----hCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 154 I----DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 154 ~----~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
. -.++++.|++++.++++.+|..|+++|++++...+..-... -.++++.++..+ .++++.++..++++|..++.
T Consensus 167 ~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~~ 244 (852)
T 4fdd_A 167 VLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH-IDSFIENLFALA-GDEEPEVRKNVCRALVMLLE 244 (852)
T ss_dssp SSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHH
Confidence 0 12467888888999999999999999999886544211000 113566777766 67788999999999999998
Q ss_pred CCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhc-----------CC-
Q 015687 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELL-----------RH- 294 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~~L-----------~~- 294 (402)
..+..-.....++++.+...+.+.++.++..+++.+..++..... ...+.. .+++.++..+ .+
T Consensus 245 ~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~--~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~ 322 (852)
T 4fdd_A 245 VRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC--KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDV 322 (852)
T ss_dssp HCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH--HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--
T ss_pred hCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCc
Confidence 764333344567888899999999999999999999999865421 112221 3456666666 23
Q ss_pred ----------CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 015687 295 ----------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 364 (402)
Q Consensus 295 ----------~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 364 (402)
.++.++..|..+++.++...++. ++. .++|.+...+.++ ++.+|..|++++++++.+..+.....
T Consensus 323 ~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~~-~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~ 397 (852)
T 4fdd_A 323 EGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LLP-HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPY 397 (852)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHHHGGG---GHH-HHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGG
T ss_pred ccccccccccccchHHHHHHHHHHHHHHhccHH---HHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 34567899999999998643321 222 4678888888888 99999999999999999877766554
Q ss_pred HHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 365 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 365 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
+ .++++.++..+.++++.||..|+|+|++++..
T Consensus 398 l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 398 L-PELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred H-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 4 34899999999999999999999999998863
No 44
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.75 E-value=1.8e-15 Score=143.14 Aligned_cols=326 Identities=14% Similarity=0.184 Sum_probs=242.2
Q ss_pred ccHHHHHHhhcC--CCHHHHHHHHHHHHHHhccCCCC----------------chhHHh-hcCcHHHHHHhhcCCCCHHH
Q 015687 71 ESLPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSP----------------PINEVI-QSGVVPRFIEFLSRDDFPQL 131 (402)
Q Consensus 71 ~~i~~l~~~l~s--~~~~~~~~a~~~l~~l~s~~~~~----------------~~~~~~-~~g~i~~L~~lL~~~~~~~~ 131 (402)
.+++.++..|+. +|.+....++..|..+++.+..+ ..+.++ +.+.++.|+.+|++.+ -.+
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~v 138 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHV 138 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHH
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHH
Confidence 478999999986 57888889999999887754221 112333 5678999999999988 899
Q ss_pred HHHHHHHHHHhhcCCCc-chHHHHh-CCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhc
Q 015687 132 QFEAAWALTNIASGTSE-NTRVVID-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN 209 (402)
Q Consensus 132 ~~~a~~~L~~l~~~~~~-~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~ 209 (402)
+..++.+|..++...++ ..+.+.. .++++.|+.+|++....+|..++..|.+|+.++++.++.+.-.|+++.|+.++.
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999987777 6676775 499999999999999999999999999999999999999999999999999994
Q ss_pred cch---hhHHHHHHHHHHHHhhhCCCCCc-hhhhhchHHHHHHhccCCChh------HHHH---HHHHHHHhccCC----
Q 015687 210 EHA---KLSMLRNATWTLSNFCRGKPQPL-FEQTRPALPALERLIHSNDDE------VLTD---ACWALSYLSDGT---- 272 (402)
Q Consensus 210 ~~~---~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~------v~~~---a~~~l~~l~~~~---- 272 (402)
... ...+...++.++.||.+.++..+ .....+++|.|.++|..+++. ...+ ++.++.-++..+
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~ 298 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG 298 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 332 23688999999999999974333 334478999999999754322 3333 555565555432
Q ss_pred --hHHHHHHHHhCcHHHHHHhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHhCC---------ChHHHHHHhcCCCc
Q 015687 273 --NDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQ---------ALPCLLDLLTQNYK 339 (402)
Q Consensus 273 --~~~~~~~~~~~~i~~L~~~L~~~--~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~---------~l~~L~~ll~~~~~ 339 (402)
......+.+.|+++.|+.++... ...++..|+.+++.++.+++.....+.+.. ++..|+.++.+...
T Consensus 299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~ 378 (651)
T 3grl_A 299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP 378 (651)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence 13345678899999999998765 568999999999999999987777666532 33334444655546
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHc----------CCH---HHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 340 KSIKKEACWTISNITAGNVNQIQAIIEA----------GII---GPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 340 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~----------~~i---~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
..+|..|+.++..+..++++....++.. +.+ ..|...+-+.|+--.--|+.++..+..
T Consensus 379 ~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~ 449 (651)
T 3grl_A 379 FVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQ 449 (651)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHc
Confidence 7899999999999999887655555543 001 123444444555333336666665554
No 45
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.68 E-value=1.6e-15 Score=148.64 Aligned_cols=305 Identities=13% Similarity=0.099 Sum_probs=227.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
.++.+++.++.+++.++..|+..+..+...-............++|.+..++++++ +.++..++++|+.++..-.. .
T Consensus 282 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~-~~vR~~a~~~l~~l~~~~~~--~ 358 (588)
T 1b3u_A 282 LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN-QHVKSALASVIMGLSPILGK--D 358 (588)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSC-HHHHHHHHTTGGGGHHHHCH--H
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhhH--h
Confidence 35677778888888899889888888876432211111223457889999998888 89999999999998753221 1
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
.....++|.+..++.+++++++..++.+++.++..... . ......++.+..++ .+.+..++..++.++..++...
T Consensus 359 -~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~-~~~~~~lp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~ 433 (588)
T 1b3u_A 359 -NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--R-QLSQSLLPAIVELA-EDAKWRVRLAIIEYMPLLAGQL 433 (588)
T ss_dssp -HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--H-HHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH--H-HHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHc
Confidence 11234789999999999999999999999988754321 1 12233677777777 6678889999999999998653
Q ss_pred CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 015687 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (402)
Q Consensus 232 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~ 311 (402)
+.. .....++|.+..++.+++..++..++.+++.++...... .....+++.+..++.++++.+|..++.+++.++
T Consensus 434 ~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~ 508 (588)
T 1b3u_A 434 GVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLS 508 (588)
T ss_dssp CGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred CHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 221 122467899999999999999999999999987542221 123457888888888889999999999999998
Q ss_pred cCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHH
Q 015687 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW 390 (402)
Q Consensus 312 ~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 390 (402)
..... ......++|.+...+.++ ++.+|..++++++.++.. .++. ....++|.|..++.+.+.++|..|++
T Consensus 509 ~~~~~---~~~~~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~----~~~~~~p~l~~l~~d~d~~vr~~a~~ 580 (588)
T 1b3u_A 509 EVCGQ---DITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGPILDNST----LQSEVKPILEKLTQDQDVDVKYFAQE 580 (588)
T ss_dssp HHHHH---HHHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGGGSCHHH----HHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HhcCH---HHHHHHHHHHHHhhCCCC-CchHHHHHHHHHHHHHHHhchhh----hHHHHHHHHHHHcCCCchhHHHHHHH
Confidence 64221 123347899999999988 899999999999999963 2322 22347788888888999999999999
Q ss_pred HHHHhhc
Q 015687 391 AISNATS 397 (402)
Q Consensus 391 aL~nl~~ 397 (402)
++..+..
T Consensus 581 al~~l~~ 587 (588)
T 1b3u_A 581 ALTVLSL 587 (588)
T ss_dssp HHHHTTC
T ss_pred HHHHhhc
Confidence 9998754
No 46
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.68 E-value=1.1e-15 Score=149.74 Aligned_cols=304 Identities=12% Similarity=0.109 Sum_probs=222.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc-hH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN-TR 151 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~-~~ 151 (402)
+|.+.+.+.++++.++..++..|..+...-. .......+++.+++++++++ +.++..|+++|+.++...+.. ..
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~ 318 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVG----PEITKTDLVPAFQNLMKDCE-AEVRAAASHKVKEFCENLSADCRE 318 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC----HHHHHHTHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhC----cccchhHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHhChhhhh
Confidence 4445555566667777777777776654210 11223457889999998887 899999999999998754322 11
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
...-..++|.+..++.++++.+|..++++|+.++..... ......+++.+...+ .+.++.++..++.++..++...
T Consensus 319 ~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~ 394 (588)
T 1b3u_A 319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQL-KDECPEVRLNIISNLDCVNEVI 394 (588)
T ss_dssp HHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHH-TCSCHHHHHHHHTTCHHHHHHS
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHHHHhc
Confidence 122336789999999999999999999999999743221 111223677888888 6678899999999999988753
Q ss_pred CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 015687 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (402)
Q Consensus 232 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~ 311 (402)
+ .......++|.+..++.+.+..++..++.++..++...... .....+++.+...+.++++.++..|+.+++.++
T Consensus 395 ~--~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 469 (588)
T 1b3u_A 395 G--IRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLV 469 (588)
T ss_dssp C--HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 2 12234678899999999899999999999999887421110 111235788888999999999999999999998
Q ss_pred cCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHH
Q 015687 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA 391 (402)
Q Consensus 312 ~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 391 (402)
...... .....++|.|..++.++ ++.+|..++++++.++...... . ....++|.|...+.++++.||..++++
T Consensus 470 ~~~~~~---~~~~~llp~l~~~~~~~-~~~~R~~a~~~l~~l~~~~~~~--~-~~~~~~~~l~~~l~d~~~~Vr~~a~~~ 542 (588)
T 1b3u_A 470 EKFGKE---WAHATIIPKVLAMSGDP-NYLHRMTTLFCINVLSEVCGQD--I-TTKHMLPTVLRMAGDPVANVRFNVAKS 542 (588)
T ss_dssp HHHCHH---HHHHHTHHHHHHTTTCS-CHHHHHHHHHHHHHHHHHHHHH--H-HHHHTHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHhCch---hHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHhhCCCCCchHHHHHHHH
Confidence 643221 12346788898888877 8999999999999998632221 1 233589999999999999999999999
Q ss_pred HHHhhc
Q 015687 392 ISNATS 397 (402)
Q Consensus 392 L~nl~~ 397 (402)
|+.++.
T Consensus 543 l~~l~~ 548 (588)
T 1b3u_A 543 LQKIGP 548 (588)
T ss_dssp HHHHGG
T ss_pred HHHHHH
Confidence 999875
No 47
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.65 E-value=1.8e-14 Score=141.02 Aligned_cols=300 Identities=17% Similarity=0.151 Sum_probs=202.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
.++.+.+.++++++..+..|+..+.++.. +... ..+++.+.+++.+++ +.++..|++++.++...+++..
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~----~~~~----~~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~- 156 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIRV----DKIT----EYLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMV- 156 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCCS----GGGH----HHHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCH-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCh----HHHH----HHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhc-
Confidence 34566666777788888777777766631 1111 224677899999888 9999999999999998766643
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
.+.+.++.|..+|.++++.++..|+++|+.++.+.+..+......+.+..|+..+ ...++-.+..++.++..++..
T Consensus 157 --~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~- 232 (591)
T 2vgl_B 157 --EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPK- 232 (591)
T ss_dssp --HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCC-
T ss_pred --ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCC-
Confidence 2347889999999999999999999999999988764311111122466677776 445666666677777666532
Q ss_pred CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHH
Q 015687 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308 (402)
Q Consensus 232 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~ 308 (402)
.......+++.+..++++.++.|+..|++++.++... +++..+.+. ..+.+.|+.++. +++.++..|+.+|+
T Consensus 233 ---~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~ 307 (591)
T 2vgl_B 233 ---DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNIN 307 (591)
T ss_dssp ---SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred ---ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHH
Confidence 2233467889999999999999999999999998742 233333332 345566776554 67888888888888
Q ss_pred HhhcCChH-----------------H-HHHHH-------hC----CChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH
Q 015687 309 NIVTGDDM-----------------Q-TQCII-------NH----QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359 (402)
Q Consensus 309 nl~~~~~~-----------------~-~~~i~-------~~----~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~ 359 (402)
.++...+. . +...+ +. .+++.|..++.+. +..+|..+++++++++...+.
T Consensus 308 ~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~~~ 386 (591)
T 2vgl_B 308 LIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEV-DVDFVRKAVRAIGRCAIKVEQ 386 (591)
T ss_dssp HHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhChh
Confidence 88742111 0 01111 11 2455666777777 889999999999999986554
Q ss_pred HHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 015687 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 360 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 396 (402)
.... +++.|++++.+....++.++..++.++.
T Consensus 387 ~~~~-----~v~~Ll~ll~~~~~~v~~e~i~~l~~ii 418 (591)
T 2vgl_B 387 SAER-----CVSTLLDLIQTKVNYVVQEAIVVIRDIF 418 (591)
T ss_dssp HHHH-----HHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 3322 3445555555555555555555555553
No 48
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.65 E-value=1.2e-15 Score=144.95 Aligned_cols=310 Identities=13% Similarity=0.097 Sum_probs=217.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCC--CCHHHHHHHHHHHHHhhcCC-Ccch
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD--DFPQLQFEAAWALTNIASGT-SENT 150 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~~~~~~a~~~L~~l~~~~-~~~~ 150 (402)
..+++.+.++++.. ..++.++..++... . +.. .-.++++.|++.+.++ + +.++..++.+|+.++... ++..
T Consensus 93 ~~ll~~l~~~~~~v-~~~~~~i~~ia~~~-~-~~~--~w~~ll~~L~~~l~~~~~~-~~~r~~al~~l~~l~~~~~~~~~ 166 (462)
T 1ibr_B 93 NYVLQTLGTETYRP-SSASQCVAGIACAE-I-PVN--QWPELIPQLVANVTNPNST-EHMKESTLEAIGYICQDIDPEQL 166 (462)
T ss_dssp HHHHHHTTCCCSSS-CSHHHHHHHHHHHH-G-GGT--CCTTHHHHHHHHHHCTTCC-HHHHHHHHHHHHHHHHHSCGGGT
T ss_pred HHHHHHhCCCCchh-hHHHHHHHHHHHHh-c-ccc--ccHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHHHHhCCchhh
Confidence 34667777777666 67777777776542 1 111 1246899999999987 6 899999999999998743 2221
Q ss_pred HHHHhCCchHHHHHhhCCC--CHHHHHHHHHHHHHhhCCCchhh-HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHh
Q 015687 151 RVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDSPKCR-DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~-~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l 227 (402)
.... ..+++.+..++.++ +..+|..|+++++++.......- ......-+++.+...+ .+.+..++..++++|..+
T Consensus 167 ~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~vr~~~~~~l~~l 244 (462)
T 1ibr_B 167 QDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKI 244 (462)
T ss_dssp GGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHH
T ss_pred HhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHH
Confidence 2112 24788899999887 79999999999999764322110 0000111244444444 667889999999999999
Q ss_pred hhCCCCCchhhhh-chHHHHHHhccCCChhHHHHHHHHHHHhccCChH---------------------HHHHHHHhCcH
Q 015687 228 CRGKPQPLFEQTR-PALPALERLIHSNDDEVLTDACWALSYLSDGTND---------------------KIQAVIEAGVC 285 (402)
Q Consensus 228 ~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~---------------------~~~~~~~~~~i 285 (402)
+...+..-..... .+++.+...+.+.+++++..+++.+..++..... ...... ..++
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 323 (462)
T 1ibr_B 245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLV 323 (462)
T ss_dssp HHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhcc
Confidence 9875432223445 7888888888889999999999998888753210 111011 2356
Q ss_pred HHHHHhcCC-------CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH
Q 015687 286 PRLVELLRH-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358 (402)
Q Consensus 286 ~~L~~~L~~-------~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 358 (402)
+.++..+.. .++.++..|+.+++.++....+ .++ ..++|.+...+.++ +..+|..|+++++.++.+..
T Consensus 324 p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~ 398 (462)
T 1ibr_B 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPE 398 (462)
T ss_dssp HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSC
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCc
Confidence 667777743 3467899999999999875442 122 25678888888888 99999999999999998643
Q ss_pred -HHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 359 -NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 359 -~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
+.+...+ ..++|.|+..+.++++.||..|+|+|++++..
T Consensus 399 ~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 399 PSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp TTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 3222222 45899999999999999999999999999864
No 49
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.63 E-value=2.2e-14 Score=121.48 Aligned_cols=189 Identities=20% Similarity=0.229 Sum_probs=158.7
Q ss_pred CCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCc
Q 015687 156 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235 (402)
Q Consensus 156 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 235 (402)
.+.++.|+.+|.++++.++..++++|+.+.. .+.++.|+..+ .++++.++..++++|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC------
Confidence 4679999999999999999999999998743 24688899999 67799999999999998863
Q ss_pred hhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 015687 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 315 (402)
Q Consensus 236 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~ 315 (402)
...++.|..+|.++++.++..++++|+.+.. .+.++.|+.++.++++.++..|+++|+++.. +
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~ 142 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--E 142 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--H
Confidence 3678999999999999999999999998863 2457889999999999999999999999843 2
Q ss_pred HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 316 ~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
..++.|..++.++ ++.+|..|+++|+.+.. ++ +++.|..++.++++.||..|..+|.++
T Consensus 143 ---------~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~--~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 143 ---------RAVEPLIKALKDE-DGWVRQSAADALGEIGG--ER---------VRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp ---------GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS--HH---------HHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred ---------HHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--hh---------HHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 4678899999888 99999999999999943 22 577888899999999999999999998
Q ss_pred hcCCC
Q 015687 396 TSGGS 400 (402)
Q Consensus 396 ~~~~~ 400 (402)
...+.
T Consensus 202 ~~~~~ 206 (211)
T 3ltm_A 202 KSFNH 206 (211)
T ss_dssp -----
T ss_pred CCCCC
Confidence 87654
No 50
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.63 E-value=1.8e-14 Score=141.11 Aligned_cols=297 Identities=18% Similarity=0.182 Sum_probs=221.4
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
+.+..+.+.|++++...+..++..+..+...+ .+. ..+++.+++++.+++ ..++..+...+..++..+++..
T Consensus 13 ~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G-~d~------~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~e~~ 84 (591)
T 2vgl_B 13 GEIFELKAELNNEKKEKRKEAVKKVIAAMTVG-KDV------SSLFPDVVNCMQTDN-LELKKLVYLYLMNYAKSQPDMA 84 (591)
T ss_dssp SHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTT-CCC------GGGHHHHHHTTSSSC-HHHHHHHHHHHHHHHHHSHHHH
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCC-CCh------HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccCchHH
Confidence 46788889999999888888877776665443 221 224677888998888 8999988888888876433321
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
. -+++.+.+-|.++++.+|..|+.+|+++. .++.... .++.+..++ .+.++.+++.|++++..++..
T Consensus 85 ---~--l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~-----l~~~l~~~L-~d~~~~VRk~A~~al~~i~~~ 151 (591)
T 2vgl_B 85 ---I--MAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEY-----LCEPLRKCL-KDEDPYVRKTAAVCVAKLHDI 151 (591)
T ss_dssp ---H--TTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHH-----HHHHHHHHS-SCSCHHHHHHHHHHHHHHHHS
T ss_pred ---H--HHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHH-----HHHHHHHHc-CCCChHHHHHHHHHHHHHHhh
Confidence 1 35778888899999999999999999995 3332222 466788888 788999999999999999986
Q ss_pred CCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 015687 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (402)
Q Consensus 231 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl 310 (402)
.|.. ....+.++.+..+|.++|+.|+..|+++|..++...++....-...+.+..|+..+.+.++..+...+++++.+
T Consensus 152 ~p~~--~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l 229 (591)
T 2vgl_B 152 NAQM--VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY 229 (591)
T ss_dssp SCCC--HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS
T ss_pred Chhh--cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh
Confidence 5432 22247889999999999999999999999999876542200001123456777777777888888999999999
Q ss_pred hcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC---CHHHHHHHHHcCCHHHHHHHhccCCHHHHHH
Q 015687 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG---NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE 387 (402)
Q Consensus 311 ~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 387 (402)
+..++.... .+++.+..++++. ++.|+.+|++++.++... +++..+.+.. .+.+.|+.++. +++.+|..
T Consensus 230 ~~~~~~~~~-----~~l~~l~~~l~~~-~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~~-~d~~vr~~ 301 (591)
T 2vgl_B 230 NPKDDREAQ-----SICERVTPRLSHA-NSAVVLSAVKVLMKFLELLPKDSDYYNMLLK-KLAPPLVTLLS-GEPEVQYV 301 (591)
T ss_dssp CCCSHHHHH-----HHHHHHTTCSCSS-TTHHHHHHHHHHHHSCCSCCBTTBSHHHHHH-HTHHHHHHHTT-SCHHHHHH
T ss_pred CCCChHHHH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHhhccCCCHHHHHHHHH-HHHHHHHHHhc-CCccHHHH
Confidence 876554433 4567888888888 999999999999999742 3444444443 36777776664 78899999
Q ss_pred HHHHHHHhhcC
Q 015687 388 AAWAISNATSG 398 (402)
Q Consensus 388 a~~aL~nl~~~ 398 (402)
|+.+|..++..
T Consensus 302 aL~~l~~i~~~ 312 (591)
T 2vgl_B 302 ALRNINLIVQK 312 (591)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988753
No 51
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.62 E-value=5.5e-14 Score=118.01 Aligned_cols=185 Identities=21% Similarity=0.241 Sum_probs=158.8
Q ss_pred CchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCch
Q 015687 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236 (402)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 236 (402)
+..+.++.+|.++++.++..|+++|+.+.. .+.++.|+..+ .++++.++..++++|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence 568899999999999999999999998753 23688899999 77899999999999988753
Q ss_pred hhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChH
Q 015687 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 316 (402)
Q Consensus 237 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~ 316 (402)
...++.|..+|.++++.++..++++|+.+.. ...++.|+.++.++++.++..|+++|+.+..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 2678999999999999999999999998753 2357889999999999999999999999853
Q ss_pred HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 015687 317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 317 ~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 396 (402)
...++.|..++.++ ++.+|..|+++|+.+. .++ .++.|..++.++++.+|..|.++|.++.
T Consensus 137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GER---------VRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SHH---------HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--chh---------HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 25688899999988 9999999999999993 333 5678888899999999999999999875
Q ss_pred c
Q 015687 397 S 397 (402)
Q Consensus 397 ~ 397 (402)
.
T Consensus 198 ~ 198 (201)
T 3ltj_A 198 S 198 (201)
T ss_dssp -
T ss_pred h
Confidence 3
No 52
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.62 E-value=1.9e-14 Score=147.85 Aligned_cols=317 Identities=17% Similarity=0.224 Sum_probs=222.9
Q ss_pred cHHHHHHhhcCC--CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhcCCCc
Q 015687 72 SLPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSE 148 (402)
Q Consensus 72 ~i~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~l~~~~~~ 148 (402)
-++.+++.+.++ ++..+..++.++..++..- .+..-.-.-..+++.+.+.+.+++ +..++..|+.+++.++..-..
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~-~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDI-DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS-CHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc-CHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888 8999999999999987532 111101112346777888888762 379999999999998763221
Q ss_pred ch-HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHh
Q 015687 149 NT-RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (402)
Q Consensus 149 ~~-~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l 227 (402)
.. .......+++.+..++.+++.+++..++.+|..++...+..-...+...+++.++..+ .+.++.++..+++++..+
T Consensus 208 ~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~al~~l~~l 286 (876)
T 1qgr_A 208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNV 286 (876)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHH
Confidence 11 0111113677788888888999999999999999865543322223335677777766 567788999999999888
Q ss_pred hhCC----------------C---CCch--hhhhchHHHHHHhccC-------CChhHHHHHHHHHHHhccCChHHHHHH
Q 015687 228 CRGK----------------P---QPLF--EQTRPALPALERLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAV 279 (402)
Q Consensus 228 ~~~~----------------~---~~~~--~~~~~~l~~L~~lL~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~ 279 (402)
+... | .... .....++|.++..+.. ++..++..+..++..++....+. +
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---~ 363 (876)
T 1qgr_A 287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---I 363 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---G
T ss_pred HHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh---h
Confidence 7641 1 1111 1235677888887742 34678889999998887543221 1
Q ss_pred HHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH
Q 015687 280 IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358 (402)
Q Consensus 280 ~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~-~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 358 (402)
+ ..+++.+...+.++++.++..|+++++.++.+.. +.....+ .+++|.++..+.++ ++.+|..|+|++++++...+
T Consensus 364 ~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCG
T ss_pred H-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCc
Confidence 1 2456777788888999999999999999998765 3333333 36899999999988 89999999999999997433
Q ss_pred HHH--HHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 359 NQI--QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 359 ~~~--~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
... ...+ ..+++.|+..+.++ +.++..|+|+|.+++..
T Consensus 441 ~~~~~~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 441 EAAINDVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp GGTSSTTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred hhcccHHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 211 1112 23678888888774 89999999999999854
No 53
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.59 E-value=8.2e-15 Score=139.24 Aligned_cols=278 Identities=17% Similarity=0.215 Sum_probs=195.9
Q ss_pred ccHHHHHHhhcCC--CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhcCCC
Q 015687 71 ESLPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTS 147 (402)
Q Consensus 71 ~~i~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~l~~~~~ 147 (402)
+.+|.+++.+.++ ++..+..++..|..+............. ..+++.++.++.++. ++.++..|+++++++.....
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3578889999988 9999999999999987532111111111 247888999998872 38999999999999765321
Q ss_pred cchH-HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHH
Q 015687 148 ENTR-VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (402)
Q Consensus 148 ~~~~-~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~ 226 (402)
+... .....-+++.+...+.+++..++..++++|..++...+..-...+..++++.++..+ .+.+..++..+++++..
T Consensus 207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~a~~~l~~ 285 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSN 285 (462)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH-HCSSHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHH
Confidence 1110 011112467777788889999999999999999865443211111114566666666 66788899999999999
Q ss_pred hhhCC-------------------CCCch--hhhhchHHHHHHhccCC-------ChhHHHHHHHHHHHhccCChHHHHH
Q 015687 227 FCRGK-------------------PQPLF--EQTRPALPALERLIHSN-------DDEVLTDACWALSYLSDGTNDKIQA 278 (402)
Q Consensus 227 l~~~~-------------------~~~~~--~~~~~~l~~L~~lL~~~-------~~~v~~~a~~~l~~l~~~~~~~~~~ 278 (402)
++... ..... .....++|.++..+... +..++..++.+|..++....+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~--- 362 (462)
T 1ibr_B 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD--- 362 (462)
T ss_dssp HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---
T ss_pred HHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHH---
Confidence 88652 11111 12356778787777432 3578999999999988543321
Q ss_pred HHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 015687 279 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (402)
Q Consensus 279 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~-~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 356 (402)
++ ..+++.+...+.++++.++..|+.++|.++.+.. ......+ ..++|.++..+.++ ++.||..|+|+|++++..
T Consensus 363 ~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHh
Confidence 22 2467888888999999999999999999998654 2111112 47899999999998 899999999999999973
No 54
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.59 E-value=7.8e-14 Score=118.01 Aligned_cols=187 Identities=21% Similarity=0.220 Sum_probs=158.5
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhh
Q 015687 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (402)
Q Consensus 113 ~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (402)
.+.++.|+++|.+++ +.++..|++.|+.+.. .++++.|+.++.++++.++..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 456899999999888 9999999999998764 2579999999999999999999999999852
Q ss_pred HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCC
Q 015687 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (402)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~ 272 (402)
.+.++.|+..+ .++++.++..++++|..+.. ...++.|..++.++++.++..++++|+.+..
T Consensus 80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 23678888888 77889999999999998853 3578999999999999999999999999853
Q ss_pred hHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHH
Q 015687 273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352 (402)
Q Consensus 273 ~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~n 352 (402)
...++.|..++.++++.++..|+.+|+.+.. + ..++.|..+++++ ++.+|..|..+|.+
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVAVNYLET 200 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 2357889999999999999999999999843 2 3567888999888 99999999999999
Q ss_pred HhcC
Q 015687 353 ITAG 356 (402)
Q Consensus 353 l~~~ 356 (402)
+...
T Consensus 201 ~~~~ 204 (211)
T 3ltm_A 201 HKSF 204 (211)
T ss_dssp ----
T ss_pred cCCC
Confidence 9764
No 55
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.58 E-value=5.1e-13 Score=131.22 Aligned_cols=337 Identities=18% Similarity=0.143 Sum_probs=227.2
Q ss_pred cCCCCchHHhhhhHHHHHHHHHHhhhHHHHhhhh-------ccccCCCCCcchhhhhhhhhccHHHHHHhhcCCCHHHHH
Q 015687 17 KVAVDAEEGRRRREDNMVEIRKNKREESLLKKRR-------EGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQL 89 (402)
Q Consensus 17 k~~~~~~~~r~~r~~~~~~lRk~~r~~~~~~kr~-------~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~~~~ 89 (402)
++.++.+|.+++-.....+||+.-++.-..+|+. ..+...+.+ .....+++.+.+++...+.
T Consensus 20 r~~~~~~~e~~~i~~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~~-----------~~~~~vik~~~s~~~~~Kr 88 (618)
T 1w63_A 20 RTARTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAH-----------FGQLECLKLIASQKFTDKR 88 (618)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCCG-----------GGHHHHHHHHHSSSHHHHH
T ss_pred HcCCChHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCCc-----------chHHHHHHHHcCCchHHHH
Confidence 4455556666666666777877654432222221 111111110 3567888888999999888
Q ss_pred HHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCC
Q 015687 90 DATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP 169 (402)
Q Consensus 90 ~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~ 169 (402)
.+.-.+..++..+ + +.++ -+++.|.+-|.+++ +.++..|+++|+++.. ++ +.+ .+++.+..+|.++
T Consensus 89 l~Yl~~~~~~~~~--~--e~~~--l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~----~~~-~l~~~l~~~L~~~ 154 (618)
T 1w63_A 89 IGYLGAMLLLDER--Q--DVHL--LMTNCIKNDLNHST-QFVQGLALCTLGCMGS--SE----MCR-DLAGEVEKLLKTS 154 (618)
T ss_dssp HHHHHHHHHCCCC--H--HHHH--HHHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HH----HHH-HHHHHHHHHHHSC
T ss_pred HHHHHHHHHhCCC--c--HHHH--HHHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HH----HHH-HHHHHHHHHHcCC
Confidence 8888888876422 1 1111 14778888888888 8999999999999984 32 222 4688889999999
Q ss_pred CHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHh
Q 015687 170 TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL 249 (402)
Q Consensus 170 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~l 249 (402)
++.+|..|+.+++++....|+... +.++.+..++ .+.++.++..|+++|..++...+.. ......++|.++.+
T Consensus 155 ~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l~~~ 227 (618)
T 1w63_A 155 NSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLL-NEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQLVRI 227 (618)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTST-TCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHH
Confidence 999999999999999876664322 4677777777 6788999999999999998664321 12234556666655
Q ss_pred ccC---------------CChhHHHHHHHHHHHhccCChHHHH-------HHH---------------------------
Q 015687 250 IHS---------------NDDEVLTDACWALSYLSDGTNDKIQ-------AVI--------------------------- 280 (402)
Q Consensus 250 L~~---------------~~~~v~~~a~~~l~~l~~~~~~~~~-------~~~--------------------------- 280 (402)
|.. .++..+..++.++..++..+++... .+.
T Consensus 228 L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~ 307 (618)
T 1w63_A 228 LKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE 307 (618)
T ss_dssp HHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC
Confidence 532 3566666666666666654332110 000
Q ss_pred ---HhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCC
Q 015687 281 ---EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357 (402)
Q Consensus 281 ---~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~ 357 (402)
...+++.|..++.++++.++..|+.+|+.++...+. .+. ...+.++..+.++ +..+|..|..+|..++...
T Consensus 308 ~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~----~~~-~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~ 381 (618)
T 1w63_A 308 SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN----AVQ-RHRSTIVDCLKDL-DVSIKRRAMELSFALVNGN 381 (618)
T ss_dssp HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH----HHG-GGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH----HHH-HHHHHHHHHccCC-ChhHHHHHHHHHHHHcccc
Confidence 012456677777778888888888888888865442 222 3566788888887 8899999999999988642
Q ss_pred HHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 358 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 358 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
. +.. +++.|...+.+.+.+++..++.+|+.++..
T Consensus 382 n--v~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 382 N--IRG-----MMKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp S--THH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred c--HHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 1 222 356777778888999999999999999874
No 56
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.58 E-value=1.4e-13 Score=115.56 Aligned_cols=185 Identities=22% Similarity=0.232 Sum_probs=158.9
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhh
Q 015687 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (402)
Q Consensus 113 ~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (402)
.+..+.++++|.+++ +.++..|+++|+.+.. .+.++.|+.+|.++++.++..++++|+.+..
T Consensus 13 ~~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp HHHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred CcchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 356889999999998 9999999999998764 2578999999999999999999999999842
Q ss_pred HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCC
Q 015687 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (402)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~ 272 (402)
.+.++.|+..+ .++++.++..++++|..+.. ...++.|..++.++++.++..++++|+.+..
T Consensus 75 -----~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 136 (201)
T 3ltj_A 75 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 136 (201)
T ss_dssp -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--
Confidence 13678888888 77899999999999998753 2578899999999999999999999999853
Q ss_pred hHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHH
Q 015687 273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352 (402)
Q Consensus 273 ~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~n 352 (402)
.+.++.|..++.++++.++..|+++|+.+. .+ ..++.|..++.++ ++.+|..|.++|..
T Consensus 137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIG--GE---------RVRAAMEKLAETG-TGFARKVAVNYLET 195 (201)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHHC-CHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 246788999999999999999999999993 22 3567888899888 99999999999998
Q ss_pred Hh
Q 015687 353 IT 354 (402)
Q Consensus 353 l~ 354 (402)
+.
T Consensus 196 l~ 197 (201)
T 3ltj_A 196 HK 197 (201)
T ss_dssp CC
T ss_pred HH
Confidence 74
No 57
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.57 E-value=3.5e-14 Score=145.49 Aligned_cols=316 Identities=13% Similarity=0.163 Sum_probs=219.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc--h
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN--T 150 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~--~ 150 (402)
++.+.+.+.+.++..+..|+.++..++...........+. .+++.++..+.+++ +.++..++|+++.++...... .
T Consensus 371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~ 448 (861)
T 2bpt_A 371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDP 448 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCC
Confidence 3445556678889999999999999975321112222222 47889999998887 999999999999988642111 0
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-----chhhHHHHhcCChHHHHHHhcc-chhhHHHHHHHHHH
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-----PKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTL 224 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-----~~~~~~~~~~g~i~~L~~~l~~-~~~~~~~~~a~~~L 224 (402)
.... ..+++.++..+.++ +.++..++++|.+++... ......+ ..+++.++..+.. +.+..++..++.++
T Consensus 449 ~~~~-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al 524 (861)
T 2bpt_A 449 QQHL-PGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSAL 524 (861)
T ss_dssp TTTH-HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence 0111 14678888888776 899999999999997532 1122222 2256677777743 33478999999999
Q ss_pred HHhhhCCCCCchhhhhchHHHHHHhccC---------------CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 015687 225 SNFCRGKPQPLFEQTRPALPALERLIHS---------------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 289 (402)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~l~~L~~lL~~---------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~ 289 (402)
..++...+.........++|.++..+.. ....++..++.++..++........... ..+++.+.
T Consensus 525 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~ 603 (861)
T 2bpt_A 525 TTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFF 603 (861)
T ss_dssp HHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHH
T ss_pred HHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHH
Confidence 9999886544444556677777776642 1355778899999988854433211111 24667778
Q ss_pred HhcCCCCh-hhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 015687 290 ELLRHPSP-SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 368 (402)
Q Consensus 290 ~~L~~~~~-~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 368 (402)
..+.+.+. .++..++.+++.++..........+. .++|.+...+.++ ++.++..++++++.++....+.....+. .
T Consensus 604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~ 680 (861)
T 2bpt_A 604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYSD-A 680 (861)
T ss_dssp HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHHH-H
T ss_pred HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchHH-H
Confidence 88877766 89999999999998654332222232 4788999999777 8889999999999998743333444443 3
Q ss_pred CHHHHHHHhccCC--HHHHHHHHHHHHHhhcC
Q 015687 369 IIGPLVNLLLNAE--FEIKKEAAWAISNATSG 398 (402)
Q Consensus 369 ~i~~L~~ll~~~~--~~v~~~a~~aL~nl~~~ 398 (402)
+++.++..+.+.+ ++++..++.+++.++..
T Consensus 681 l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~ 712 (861)
T 2bpt_A 681 MMNVLAQMISNPNARRELKPAVLSVFGDIASN 712 (861)
T ss_dssp HHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence 7888888888764 88999999999988753
No 58
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.57 E-value=8.3e-14 Score=143.02 Aligned_cols=311 Identities=16% Similarity=0.179 Sum_probs=204.2
Q ss_pred HHHHHHhhcC-------CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcC
Q 015687 73 LPAMVAGVWS-------DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG 145 (402)
Q Consensus 73 i~~l~~~l~s-------~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~ 145 (402)
++.+++.+.. ++...+..|+.++..+...- . +.++ ..+++.+...+.+++ +.++..|+++|+.++.+
T Consensus 323 l~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~-~---~~~~-~~~l~~l~~~l~~~~-~~~r~~a~~~l~~i~~~ 396 (876)
T 1qgr_A 323 VPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC-E---DDIV-PHVLPFIKEHIKNPD-WRYRDAAVMAFGCILEG 396 (876)
T ss_dssp HHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH-G---GGGH-HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSS
T ss_pred hHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHC-c---HhhH-HHHHHHHHHHccCCC-hHHHHHHHHHHHHHHcC
Confidence 5666777652 34567778888888776432 1 1222 246777788888877 89999999999999986
Q ss_pred CC-cchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh---hHHHHhcCChHHHHHHhccchhhHHHHHHH
Q 015687 146 TS-ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC---RDLVLSNGALMPLLAQFNEHAKLSMLRNAT 221 (402)
Q Consensus 146 ~~-~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~ 221 (402)
.. +...... .+++|.++..+.++++.+|..|+|+|++++...+.. ...+ ..+++.++..+.+ ++.++..++
T Consensus 397 ~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~--~~~v~~~a~ 471 (876)
T 1qgr_A 397 PEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSA--EPRVASNVC 471 (876)
T ss_dssp SCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTS--CHHHHHHHH
T ss_pred CCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcC--CHHHHHHHH
Confidence 54 3232333 358999999999999999999999999998654321 1111 1356777777733 378899999
Q ss_pred HHHHHhhhCCC--------------CCchhhhhchHHHHHHhccCC---ChhHHHHHHHHHHHhc---------------
Q 015687 222 WTLSNFCRGKP--------------QPLFEQTRPALPALERLIHSN---DDEVLTDACWALSYLS--------------- 269 (402)
Q Consensus 222 ~~L~~l~~~~~--------------~~~~~~~~~~l~~L~~lL~~~---~~~v~~~a~~~l~~l~--------------- 269 (402)
|++.+++.... ..-..+...++|.|..++... +..++..++.++..++
T Consensus 472 ~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~ 551 (876)
T 1qgr_A 472 WAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTT 551 (876)
T ss_dssp HHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHH
Confidence 99999986521 112234466777777777543 2344444444444333
Q ss_pred -----------------------------------------cCCh-HHHHHHHHhCcHHHHHHhcCCCC--hhhHHHHHH
Q 015687 270 -----------------------------------------DGTN-DKIQAVIEAGVCPRLVELLRHPS--PSVLIPALR 305 (402)
Q Consensus 270 -----------------------------------------~~~~-~~~~~~~~~~~i~~L~~~L~~~~--~~v~~~a~~ 305 (402)
.... ...... -..+++.++..+.+.. +.++..++.
T Consensus 552 ~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~~v~~~a~~ 630 (876)
T 1qgr_A 552 LVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQI-SDVVMASLLRMFQSTAGSGGVQEDALM 630 (876)
T ss_dssp HHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTT-HHHHHHHHHHHC-----CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHH-HHHHHHHHHHHHHhccCCCCccHHHHH
Confidence 2211 111100 1135667777777664 478999999
Q ss_pred HHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc--CCHH
Q 015687 306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFE 383 (402)
Q Consensus 306 ~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~ 383 (402)
+++.++..........+. .++|.+...+.+..++.+|..++++++.++......+...+. .+++.|+..+.+ .+.+
T Consensus 631 ~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~ 708 (876)
T 1qgr_A 631 AVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCD-EVMQLLLENLGNENVHRS 708 (876)
T ss_dssp HHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHTCTTSCGG
T ss_pred HHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHhCCccccHH
Confidence 999998643222222222 367888888876546889999999999998643333444443 478889999987 4678
Q ss_pred HHHHHHHHHHHhhc
Q 015687 384 IKKEAAWAISNATS 397 (402)
Q Consensus 384 v~~~a~~aL~nl~~ 397 (402)
++..+++++++++.
T Consensus 709 ~~~~~~~~l~~i~~ 722 (876)
T 1qgr_A 709 VKPQILSVFGDIAL 722 (876)
T ss_dssp GHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 99999999999875
No 59
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.56 E-value=2.1e-13 Score=139.67 Aligned_cols=316 Identities=14% Similarity=0.183 Sum_probs=218.0
Q ss_pred cHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCc--hhHHhhcCcHHHHHHhhcCC--CCHHHHHHHHHHHHHhhcCC
Q 015687 72 SLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPP--INEVIQSGVVPRFIEFLSRD--DFPQLQFEAAWALTNIASGT 146 (402)
Q Consensus 72 ~i~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~--~~~~~~~g~i~~L~~lL~~~--~~~~~~~~a~~~L~~l~~~~ 146 (402)
-++.+++.+.++ ++..+..++..+..+...-.... ... ....+++.+...+.++ + +.++..|+.+++.+...-
T Consensus 135 ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~-~~vr~~al~~l~~~~~~~ 212 (861)
T 2bpt_A 135 LMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVS-SSNNILIAIVQGAQSTETS-KAVRLAALNALADSLIFI 212 (861)
T ss_dssp HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGG-GHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHH-HHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHHHHHHH
Confidence 467888888888 99999999999988865321110 111 1223677778888876 5 899999999999875421
Q ss_pred Ccch-HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHH
Q 015687 147 SENT-RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS 225 (402)
Q Consensus 147 ~~~~-~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~ 225 (402)
.... .......+++.|...+.+++.+++..++.+|..++...+..-...+...+++.++..+ .+.+..++..++.++.
T Consensus 213 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~vr~~a~~~l~ 291 (861)
T 2bpt_A 213 KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATM-KSPNDKVASMTVEFWS 291 (861)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHT-TCSSHHHHHHHHHHHH
T ss_pred HHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHH
Confidence 1110 0000113577778888889999999999999999865432211111214555666666 5678899999999999
Q ss_pred HhhhCCC---------------CCc--hhhhhchHHHHHHhccCC-------ChhHHHHHHHHHHHhccCChHHHHHHHH
Q 015687 226 NFCRGKP---------------QPL--FEQTRPALPALERLIHSN-------DDEVLTDACWALSYLSDGTNDKIQAVIE 281 (402)
Q Consensus 226 ~l~~~~~---------------~~~--~~~~~~~l~~L~~lL~~~-------~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 281 (402)
.++.... ... ......++|.++..+... +..++..+..++..++....+. ++
T Consensus 292 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~---~~- 367 (861)
T 2bpt_A 292 TICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH---IL- 367 (861)
T ss_dssp HHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG---GH-
T ss_pred HHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHh---HH-
Confidence 8887521 111 123367788888888642 3468889999998887532211 11
Q ss_pred hCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHH
Q 015687 282 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 360 (402)
Q Consensus 282 ~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~-~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~ 360 (402)
..+++.+...+.+.++.++..|+++++.++.+.. ......+. .+++.++..+.++ ++.+|..++|+++.++...+..
T Consensus 368 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~ 445 (861)
T 2bpt_A 368 EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQ-SLQVKETTAWCIGRIADSVAES 445 (861)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHhhhh
Confidence 1356777778888899999999999999998753 44433443 5788999999888 9999999999999998631111
Q ss_pred H--HHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 361 I--QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 361 ~--~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
. ...+ ..+++.|+..+.++ +.++..|+|+|.+++.+
T Consensus 446 ~~~~~~~-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 483 (861)
T 2bpt_A 446 IDPQQHL-PGVVQACLIGLQDH-PKVATNCSWTIINLVEQ 483 (861)
T ss_dssp SCTTTTH-HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHH
T ss_pred cCCHHHH-HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHh
Confidence 0 0111 22678888888765 99999999999998764
No 60
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.48 E-value=7.4e-12 Score=123.00 Aligned_cols=294 Identities=15% Similarity=0.165 Sum_probs=208.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
+..+-+.+++++...+..++..+..+.... .+. ..+....++++.+++ ...+..+...+..++..+++...
T Consensus 36 ~~~ir~~l~~~~~~~k~~~l~kli~~~~~G-~d~------~~~~~~vik~~~s~~-~~~Krl~Yl~~~~~~~~~~e~~~- 106 (618)
T 1w63_A 36 CAAIRSSFREEDNTYRCRNVAKLLYMHMLG-YPA------HFGQLECLKLIASQK-FTDKRIGYLGAMLLLDERQDVHL- 106 (618)
T ss_dssp HHHHHHHHTTTCTTTHHHHHHHHHHHHHTT-CCC------GGGHHHHHHHHHSSS-HHHHHHHHHHHHHHCCCCHHHHH-
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHcC-CCC------cchHHHHHHHHcCCc-hHHHHHHHHHHHHHhCCCcHHHH-
Confidence 456666777766666666666665554433 221 224667778888887 78888888888888875443211
Q ss_pred HHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC
Q 015687 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 232 (402)
-++..|.+-|.++++.++..|+++|+++.. ++. . ...++.+...+ .+.++.+++.|+.++..+....|
T Consensus 107 ----l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~----~-~~l~~~l~~~L-~~~~~~VRk~A~~al~~l~~~~p 174 (618)
T 1w63_A 107 ----LMTNCIKNDLNHSTQFVQGLALCTLGCMGS--SEM----C-RDLAGEVEKLL-KTSNSYLRKKAALCAVHVIRKVP 174 (618)
T ss_dssp ----HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHH----H-HHHHHHHHHHH-HSCCHHHHHHHHHHHHHHHHHCG
T ss_pred ----HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHH----H-HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHCh
Confidence 257888888999999999999999999973 221 1 23577788888 77899999999999999998754
Q ss_pred CCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC---------------CCh
Q 015687 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH---------------PSP 297 (402)
Q Consensus 233 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~---------------~~~ 297 (402)
. ...++++.+..+|.+.|+.|+..|++++..++..+++....+ ..+++.++.+|.+ .++
T Consensus 175 ~----~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~ 248 (618)
T 1w63_A 175 E----LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDP 248 (618)
T ss_dssp G----GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCH
T ss_pred H----HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCC
Confidence 2 335788889999999999999999999999997655432222 2566777766532 366
Q ss_pred hhHHHHHHHHHHhhcCChHHHHH-------H----------------------Hh--------CCChHHHHHHhcCCCch
Q 015687 298 SVLIPALRTVGNIVTGDDMQTQC-------I----------------------IN--------HQALPCLLDLLTQNYKK 340 (402)
Q Consensus 298 ~v~~~a~~~l~nl~~~~~~~~~~-------i----------------------~~--------~~~l~~L~~ll~~~~~~ 340 (402)
-.+..++++++.++..++..... + +. ..+++.|..++.++ ++
T Consensus 249 ~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~-d~ 327 (618)
T 1w63_A 249 FLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNN-DK 327 (618)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCS-ST
T ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCC-CC
Confidence 67777888888887655432110 0 00 02456777777777 88
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 341 SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 341 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
.+|..|..+|+.++...+..+ . ...+.++..+.+++..+|..|+.+|..++...
T Consensus 328 ~vr~~aL~~L~~i~~~~p~~~----~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~ 381 (618)
T 1w63_A 328 NIRYVALTSLLKTVQTDHNAV----Q-RHRSTIVDCLKDLDVSIKRRAMELSFALVNGN 381 (618)
T ss_dssp TTHHHHHHHHHHHHHHHHHHH----G-GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS
T ss_pred chHHHHHHHHHHHHhhCHHHH----H-HHHHHHHHHccCCChhHHHHHHHHHHHHcccc
Confidence 888888888888876544422 2 25667888888889999999999999988754
No 61
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.48 E-value=6.4e-13 Score=141.23 Aligned_cols=314 Identities=15% Similarity=0.155 Sum_probs=221.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
.++.+++.+.+.|++.+..|...|.+.+... ....+.-....+++.+++.|.+.+ +.+|..|+.+|+.++...++ .
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~--~ 82 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKE--Y 82 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCH--H
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHccc-ccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCH--H
Confidence 4789999999999999999999999886543 111111122346888999998877 89999999999999976444 1
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhh-----HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHH
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR-----DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~-----~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~ 226 (402)
.+ ..+++.|+..+.++++.+|..++.+|+.++...+... ..-....+++.|+..+.++++..++..++.+|..
T Consensus 83 ~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 83 QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD 160 (1230)
T ss_dssp HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 11 2468888888888899999999999999985433210 0111223788888888435778999999999999
Q ss_pred hhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC-ChhhHHHHHH
Q 015687 227 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALR 305 (402)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~-~~~v~~~a~~ 305 (402)
++...+..-......+++.+...|.++++.++..++.+++.++....+. + -..+++.++..|.+. ++.++..++.
T Consensus 161 ~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~~~~~~r~~a~~ 236 (1230)
T 1u6g_C 161 MLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYIQ 236 (1230)
T ss_dssp HHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccCCchhHHHHHHH
Confidence 9976433333355788899999999999999999999999998765432 1 124577777777543 3467888999
Q ss_pred HHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc------
Q 015687 306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN------ 379 (402)
Q Consensus 306 ~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~------ 379 (402)
+++.++...+...... -..++|.+...+.+. ++.+|..+++++..++...++.+...+. .+++.++..+..
T Consensus 237 ~l~~l~~~~~~~~~~~-l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~~ 313 (1230)
T 1u6g_C 237 CIAAISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNY 313 (1230)
T ss_dssp HHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC-----
T ss_pred HHHHHHHHhHHHHHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCCC
Confidence 9999886543321111 136889999999887 8999999999999998743332222222 144444444321
Q ss_pred -------------------------------CCHHHHHHHHHHHHHhhcC
Q 015687 380 -------------------------------AEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 380 -------------------------------~~~~v~~~a~~aL~nl~~~ 398 (402)
...++|..|+.++..++..
T Consensus 314 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~ 363 (1230)
T 1u6g_C 314 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVST 363 (1230)
T ss_dssp -------------------------------CTTHHHHHHHHHHHHHHTT
T ss_pred cccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHh
Confidence 1245799999999988763
No 62
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.40 E-value=4.3e-12 Score=134.92 Aligned_cols=318 Identities=12% Similarity=0.166 Sum_probs=218.9
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCc----hhHHhhcCcHHHHHHhhcC-CCCHHHHHHHHHHHHHhhcCC
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP----INEVIQSGVVPRFIEFLSR-DDFPQLQFEAAWALTNIASGT 146 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~----~~~~~~~g~i~~L~~lL~~-~~~~~~~~~a~~~L~~l~~~~ 146 (402)
.++.++..+.++++..+..|+.++..++..-.... ...-....++|.|++.+.+ ++ +.++..|+.+|..++...
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~ 165 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQ 165 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHh
Confidence 35677788888888888889999988875431110 1111233578999999984 55 899999999999998532
Q ss_pred CcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHH
Q 015687 147 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (402)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~ 226 (402)
+....... ..+++.|...+.++++.+|..|+.+|+.++...+. .+ -...++.++..+....+..++..++.++..
T Consensus 166 ~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~ 240 (1230)
T 1u6g_C 166 GGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAA 240 (1230)
T ss_dssp CSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred HhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 22111111 24678888888999999999999999999976542 12 223578888888554445677788999999
Q ss_pred hhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC------------
Q 015687 227 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH------------ 294 (402)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~------------ 294 (402)
++...+..-......++|.+...+.+++++++..+++++..++..........+ ..+++.++..+..
T Consensus 241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~ 319 (1230)
T 1u6g_C 241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDED 319 (1230)
T ss_dssp HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-----------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccc
Confidence 987754322334578999999999989999999999999888754332111111 2234444444421
Q ss_pred -------------------------CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHH
Q 015687 295 -------------------------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT 349 (402)
Q Consensus 295 -------------------------~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~ 349 (402)
..+.++..|+.+++.++...+.....++ ..++|.+...+.+. ++.+|..++.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~ 397 (1230)
T 1u6g_C 320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHA 397 (1230)
T ss_dssp -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHH
T ss_pred cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHH
Confidence 1245788999999999875543333333 36788888888777 88999999998
Q ss_pred HHHHhc--CC-----------------HHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 350 ISNITA--GN-----------------VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 350 L~nl~~--~~-----------------~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
+..++. +. ...+..++. .+++.+...+.+.++.+|..++.+|+.++.++
T Consensus 398 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~ 465 (1230)
T 1u6g_C 398 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVP-NIVKALHKQMKEKSVKTRQCCFNMLTELVNVL 465 (1230)
T ss_dssp HHHHHHHHCCC------------CCCHHHHHHHHTT-HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhccccccccCccccccccchHHHHHHHhh-HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Confidence 887764 11 122223332 36777778899999999999999999987653
No 63
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.40 E-value=5.3e-10 Score=109.53 Aligned_cols=339 Identities=14% Similarity=0.173 Sum_probs=219.1
Q ss_pred CCCchHHhhhhHHHHHHHHHHhhh----HHHHhhhhc------cccCCCCCcchhhhhhhhhccHHHHHHhhcCCCHHHH
Q 015687 19 AVDAEEGRRRREDNMVEIRKNKRE----ESLLKKRRE------GLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQ 88 (402)
Q Consensus 19 ~~~~~~~r~~r~~~~~~lRk~~r~----~~~~~kr~~------~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~~~ 88 (402)
..+.++.+++-.....+||++-+. ..-.|++.+ .+...+.+ .....+++.+.+++...+
T Consensus 23 ~~~~~~e~~~i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s-----------~~~~~vvkl~~s~~~~~K 91 (621)
T 2vgl_A 23 CKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDID-----------FGHMEAVNLLSSNRYTEK 91 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCC-----------SCHHHHHHGGGCSCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCCc-----------hhHHHHHHHhcCCCHHHH
Confidence 455566676666677788877652 222232221 11111111 356888999999999999
Q ss_pred HHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhh--
Q 015687 89 LDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL-- 166 (402)
Q Consensus 89 ~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL-- 166 (402)
..+.-.+..++..+ + +.++- +++.+.+=|.+++ +.++-.|+.+|+++.. ++ +.+ .+++.+.+++
T Consensus 92 rl~YL~l~~~~~~~--~--e~~~L--~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e----~~~-~l~~~v~~~l~~ 157 (621)
T 2vgl_A 92 QIGYLFISVLVNSN--S--ELIRL--INNAIKNDLASRN-PTFMGLALHCIANVGS--RE----MAE-AFAGEIPKILVA 157 (621)
T ss_dssp HHHHHHHHHSCCCC--H--HHHHH--HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HH----HHH-HHTTHHHHHHHC
T ss_pred HHHHHHHHHHccCC--c--HHHHH--HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HH----HHH-HHHHHHHHHHhC
Confidence 98888888876432 1 21111 3677888888888 8999999999999965 33 222 4678889999
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHH
Q 015687 167 SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPAL 246 (402)
Q Consensus 167 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L 246 (402)
.+.++-||..|+.++.++....|+. +...+.++.+..+| .+.++.++.+++.++..++...+..-......++..|
T Consensus 158 ~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L 233 (621)
T 2vgl_A 158 GDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRL 233 (621)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 8899999999999999998766542 22247889999999 7788999999999999998765321001111122222
Q ss_pred HHhccCC-------------ChhHHHHHHHHHHHhccCC-hHHHHHH-------H-------------------------
Q 015687 247 ERLIHSN-------------DDEVLTDACWALSYLSDGT-NDKIQAV-------I------------------------- 280 (402)
Q Consensus 247 ~~lL~~~-------------~~~v~~~a~~~l~~l~~~~-~~~~~~~-------~------------------------- 280 (402)
..++... ++-.+...+..+..++..+ ++....+ +
T Consensus 234 ~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea 313 (621)
T 2vgl_A 234 SRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEA 313 (621)
T ss_dssp HHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHH
Confidence 2222110 3334444444444443211 1111100 0
Q ss_pred -------------HhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhc-CCCchhHHHHH
Q 015687 281 -------------EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEA 346 (402)
Q Consensus 281 -------------~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~-~~~~~~v~~~a 346 (402)
-..++..|..+|.+.++.++..++.+|..++...+. .. .+. ...+.++..+. ++ +..+|..+
T Consensus 314 ~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~-~~~-~~~~~i~~~L~~d~-d~~Ir~~a 389 (621)
T 2vgl_A 314 ISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HE-AVK-THIETVINALKTER-DVSVRQRA 389 (621)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HH-HHH-TTHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HH-HHH-HHHHHHHHHhccCC-CHhHHHHH
Confidence 012455667777777788888888888888765531 11 222 45677778887 77 88899999
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 347 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 347 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
.-+|..++. +.++..+ +..|...+...+.+++.+++.+++.++.
T Consensus 390 L~lL~~l~~--~~Nv~~I-----v~eL~~yl~~~d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 390 VDLLYAMCD--RSNAQQI-----VAEMLSYLETADYSIREEIVLKVAILAE 433 (621)
T ss_dssp HHHHHHHCC--HHHHHHH-----HHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--hhhHHHH-----HHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 999988874 4555554 4566777777888999999999988874
No 64
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.31 E-value=4.7e-11 Score=118.49 Aligned_cols=215 Identities=17% Similarity=0.138 Sum_probs=157.2
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHH-HHhhCCCCHHHHHHHHHHHHHhhCC-Cchh
Q 015687 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF-VRLLSSPTDDVREQAVWALGNVAGD-SPKC 191 (402)
Q Consensus 114 g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L-~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~ 191 (402)
.++| +++.|++++ +..|..|+++|++|+.+ +..+..+...|+|..+ ..+|.+++.++|..|+++|+||+.+ .+..
T Consensus 35 ~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 35 KILP-VLKDLKSPD-AKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp TTHH-HHHHHSSSC-CSHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hHHH-HHHHcCCCC-HHHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 3444 567789888 89999999999999974 7888888888888775 5588999999999999999999965 4667
Q ss_pred hHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccC
Q 015687 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG 271 (402)
Q Consensus 192 ~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~ 271 (402)
++.+...|++++|..++.+. ...+..+........ ......+ .++...++.+|.+|+.+
T Consensus 112 ~~~l~~~~il~~L~~~l~~~---------~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~l~lL~~L~e~ 170 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAV---------LETLTTSEPPFSKLL-KAQQRLV-----------WDITGSLLVLIGLLALA 170 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHH---------HHHHHCBTTBGGGSC-HHHHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhh---------HHHHhhhcccccccc-HHHHHHH-----------HHHHHHHHHHHHHHHhC
Confidence 88899999999999998321 122222221110000 0001111 12446677888888888
Q ss_pred ChHHHHHHHHhCcHHHHHHhcCC---CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChH---HHHHHhcCCCchhHHHH
Q 015687 272 TNDKIQAVIEAGVCPRLVELLRH---PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALP---CLLDLLTQNYKKSIKKE 345 (402)
Q Consensus 272 ~~~~~~~~~~~~~i~~L~~~L~~---~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~---~L~~ll~~~~~~~v~~~ 345 (402)
+++....+...+.++.|+..|.+ ....++..|+.+|..++..++...+.+.+.+... .+..+.. . +...+..
T Consensus 171 s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~-~~~~~~l 248 (684)
T 4gmo_A 171 RDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-G-TDPRAVM 248 (684)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-S-SCTTHHH
T ss_pred CHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-C-CcHHHHH
Confidence 88877788888999999998843 2457999999999999999998888888876543 3333333 3 4456889
Q ss_pred HHHHHHHHh
Q 015687 346 ACWTISNIT 354 (402)
Q Consensus 346 a~~~L~nl~ 354 (402)
++++|.|+.
T Consensus 249 a~giL~Ni~ 257 (684)
T 4gmo_A 249 ACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhHh
Confidence 999999985
No 65
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.28 E-value=1.9e-09 Score=84.41 Aligned_cols=217 Identities=14% Similarity=0.189 Sum_probs=178.1
Q ss_pred hCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCC
Q 015687 155 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 234 (402)
Q Consensus 155 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 234 (402)
+..++..++.+|.+.-..++.+|+..+.+++...|+.... .+..|+.++..+....+......++..++...|
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-- 102 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-- 102 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence 3457889999999988999999999999999988876444 355778888778888888889999999998754
Q ss_pred chhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCC
Q 015687 235 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 314 (402)
Q Consensus 235 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~ 314 (402)
..+.+.+|.+..-..-.|+.++.+..++|..++...+.... +++.-+..++.+++..-+..|+..|+.+..+.
T Consensus 103 --e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~ 175 (253)
T 2db0_A 103 --ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS 175 (253)
T ss_dssp --HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred --HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence 45578888888888888999999999999999987775433 56778899999999888899999999988776
Q ss_pred hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHH
Q 015687 315 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394 (402)
Q Consensus 315 ~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~n 394 (402)
..+.. -.+|.|..+|.+. +.-||..|+-+|.+++..++..+..+. .-+.-+++.+..+++....+|+.
T Consensus 176 ~~yv~-----PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 176 FKYVN-----PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp HHHHG-----GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHH
T ss_pred ccccC-----cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHH
Confidence 65443 6789999999999 999999999999999998888544333 33566778888899888888887
Q ss_pred hhc
Q 015687 395 ATS 397 (402)
Q Consensus 395 l~~ 397 (402)
++.
T Consensus 244 l~l 246 (253)
T 2db0_A 244 LLL 246 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 66
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.27 E-value=4.4e-10 Score=111.75 Aligned_cols=272 Identities=14% Similarity=0.141 Sum_probs=193.9
Q ss_pred cHHHHHHhhc---CCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCC-------CHHHHHHHHHHHHH
Q 015687 72 SLPAMVAGVW---SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-------FPQLQFEAAWALTN 141 (402)
Q Consensus 72 ~i~~l~~~l~---s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~-------~~~~~~~a~~~L~~ 141 (402)
++..+-+.|. ++++..+.-|+..|.-+-++.. +. ++..|...|.+++ .+.++..|+..|+-
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~----~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG----RD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT----HH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc----HH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 3455555665 5677888888888888755431 11 4667777776543 26788899999998
Q ss_pred hhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHH
Q 015687 142 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT 221 (402)
Q Consensus 142 l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~ 221 (402)
+..++... .+++.|..++.+.+..+++.|+.+||-+..+... .+ ++..|+..+....+..+++.++
T Consensus 464 a~~GS~~e-------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-~~------ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 464 AAMGSANI-------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-PE------AIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp HSTTCCCH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-HH------HHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhcCCCCH-------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-HH------HHHHHHHHHhccCcHHHHHHHH
Confidence 77664321 3577788888887888888999999987433321 11 3556666665566788999999
Q ss_pred HHHHHhhhCCCCCchhhhhchHHHHHHhcc-CCChhHHHHHHHHHHH--hccCChHHHHHHHHhCcHHHHHHhc-CCCCh
Q 015687 222 WTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSY--LSDGTNDKIQAVIEAGVCPRLVELL-RHPSP 297 (402)
Q Consensus 222 ~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~l~~--l~~~~~~~~~~~~~~~~i~~L~~~L-~~~~~ 297 (402)
.+|..+..+.+ ..++.++..|. +.++-++..++.+++. ...++... ++.|+..+ .+.+.
T Consensus 530 lgLGll~~g~~--------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---------Iq~LL~~~~~d~~d 592 (963)
T 4ady_A 530 VGLALINYGRQ--------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA---------VKRLLHVAVSDSND 592 (963)
T ss_dssp HHHHHHTTTCG--------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---------HHHHHHHHHHCSCH
T ss_pred HHHHhhhCCCh--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---------HHHHHHHhccCCcH
Confidence 99998876532 45666776665 4678888888877754 33444433 34444443 46678
Q ss_pred hhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh
Q 015687 298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 377 (402)
Q Consensus 298 ~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 377 (402)
.+|..|+.+||.+..+++ ..++.++.+|.+.+++.+|..|+++|+.++++++.. .++..|..++
T Consensus 593 ~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~ 656 (963)
T 4ady_A 593 DVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHc
Confidence 899999999999988775 345667765554449999999999999999876531 1566778888
Q ss_pred ccCCHHHHHHHHHHHHHhhcCC
Q 015687 378 LNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 378 ~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
.+.+..|+..|+.+|+.+..+.
T Consensus 657 ~D~d~~Vrq~Ai~ALG~Ig~gt 678 (963)
T 4ady_A 657 KDPVDFVRQAAMIALSMILIQQ 678 (963)
T ss_dssp TCSSHHHHHHHHHHHHHHSTTC
T ss_pred cCCCHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999988764
No 67
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.17 E-value=1.5e-10 Score=114.87 Aligned_cols=195 Identities=14% Similarity=0.105 Sum_probs=151.5
Q ss_pred ChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHH-HHHhccCCChhHHHHHHHHHHHhccC-ChHHHH
Q 015687 200 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA-LERLIHSNDDEVLTDACWALSYLSDG-TNDKIQ 277 (402)
Q Consensus 200 ~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~-L~~lL~~~~~~v~~~a~~~l~~l~~~-~~~~~~ 277 (402)
.+.++++.| +++++..+..||++|++|+.+..........++++. +..+|.+++.+|+..|+++|.||+.. ..+...
T Consensus 35 ~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 566788888 788999999999999999976433333344566654 56788999999999999999999854 566778
Q ss_pred HHHHhCcHHHHHHhcCCCC---------------------hhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC
Q 015687 278 AVIEAGVCPRLVELLRHPS---------------------PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 336 (402)
Q Consensus 278 ~~~~~~~i~~L~~~L~~~~---------------------~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~ 336 (402)
.++..|+++.|..++.... +.+...++.+|.+++.+++.....+...+.++.|+..|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 8999999999998874210 1244568889999999888888888889999999998854
Q ss_pred C--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCH---HHHHHHhccCCHHHHHHHHHHHHHhh
Q 015687 337 N--YKKSIKKEACWTISNITAGNVNQIQAIIEAGII---GPLVNLLLNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 337 ~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i---~~L~~ll~~~~~~v~~~a~~aL~nl~ 396 (402)
. ....++..|+.+|.+++.++++.++.+.+.+.. ..+..+ ..++...+..+++.|.|+.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~-~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKL-ATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHH-HHSSCTTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHH-hcCCcHHHHHHHHHHHhHh
Confidence 3 135799999999999999999999998887653 333333 3344556778999999975
No 68
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.16 E-value=2.6e-09 Score=104.71 Aligned_cols=255 Identities=15% Similarity=0.151 Sum_probs=179.0
Q ss_pred HHHHHHhh--cCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 73 LPAMVAGV--WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 73 i~~l~~~l--~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
++.+.+.+ .+.++.++..|+.++.++.... + +.+...++++.+.++|.+.+ +.++..|+.++..++..+++.
T Consensus 148 ~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~--p--~~~~~~~~~~~l~~lL~d~d-~~V~~~a~~~l~~i~~~~~~~- 221 (621)
T 2vgl_A 148 AGEIPKILVAGDTMDSVKQSAALCLLRLYRTS--P--DLVPMGDWTSRVVHLLNDQH-LGVVTAATSLITTLAQKNPEE- 221 (621)
T ss_dssp TTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC--G--GGCCCCSCHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCHHH-
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC--h--hhcCchhHHHHHHHHhCCCC-ccHHHHHHHHHHHHHHhChHH-
Confidence 46667777 6778888888888888887532 2 11222578999999998888 899999999999999865432
Q ss_pred HHHHhCCchHHHH----HhhCC-------------CCHHHHHHHHHHHHHhhCC-CchhhHHHHhcCChHHHHHHhc---
Q 015687 151 RVVIDHGAVPIFV----RLLSS-------------PTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFN--- 209 (402)
Q Consensus 151 ~~~~~~g~i~~L~----~lL~~-------------~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~~l~--- 209 (402)
+. ..+|.++ +++.. +++-.+...+..|+.++.. ++..+..+.+ .+..++..+.
T Consensus 222 --~~--~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ 295 (621)
T 2vgl_A 222 --FK--TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPP 295 (621)
T ss_dssp --HT--THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCC
T ss_pred --HH--HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCc
Confidence 11 2344444 44322 1678898999999998863 3444444443 4444444321
Q ss_pred -----cchh--hHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHh
Q 015687 210 -----EHAK--LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA 282 (402)
Q Consensus 210 -----~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 282 (402)
++.+ ..+...++.++..+. ........++..|..+|.+.+++++..++.++..++...+.. . ++ .
T Consensus 296 ks~~l~~~n~~~aVl~ea~~~i~~l~-----~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~-~-~~-~ 367 (621)
T 2vgl_A 296 KSKKVQHSNAKNAVLFEAISLIIHHD-----SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSH-E-AV-K 367 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH-H-HH-H
T ss_pred ccccccccchHHHHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH-H-HH-H
Confidence 1223 377888888888774 123445678888999999999999999999999998765321 1 22 2
Q ss_pred CcHHHHHHhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 283 GVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 283 ~~i~~L~~~L~-~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
.....++..|. +++..++..++.++..++. +.....+ +..|...+.+. +.+++.+++..++.++.
T Consensus 368 ~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~I-----v~eL~~yl~~~-d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 368 THIETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQQI-----VAEMLSYLETA-DYSIREEIVLKVAILAE 433 (621)
T ss_dssp TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHHH-----HHHHHHHHHHC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHHH-----HHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 45677888888 8999999999999999974 3444433 44677777777 88888888888888774
No 69
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.08 E-value=1.4e-08 Score=91.13 Aligned_cols=277 Identities=14% Similarity=0.066 Sum_probs=164.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
...+++.++++|...+...--.+..+... .++ ++ =+++.|.+=+++++ +-++-.|+++|++|... +..+
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e----~i--Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~~--~m~~- 138 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AED----VI--IVTSSLTKDMTGKE-DSYRGPAVRALCQITDS--TMLQ- 138 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSC----GG--GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCCT--TTHH-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHH----HH--HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCCH--HHHH-
Confidence 56778899999999999888888777532 122 22 14788889999988 89999999999999873 3333
Q ss_pred HHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC
Q 015687 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 232 (402)
.+.+.+.+.|.+.++-||..|+.+...+....|+. + .++++.+-+++ .+.++.++.+|..++..++..+
T Consensus 139 ----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~---v--~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d- 207 (355)
T 3tjz_B 139 ----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV---V--KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND- 207 (355)
T ss_dssp ----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH---H--HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC-
T ss_pred ----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH---H--HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc-
Confidence 35677888999999999999999999999887753 2 25888888888 7778889999999999998753
Q ss_pred CCchhhhhchHHHHHHhccCC---ChhHHHHHHHHHHHhccCC-hHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHH
Q 015687 233 QPLFEQTRPALPALERLIHSN---DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308 (402)
Q Consensus 233 ~~~~~~~~~~l~~L~~lL~~~---~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~ 308 (402)
...+..++..+... ++-.+...++.+..++..+ +. ....+++.+.++|++.++.|...|+++|.
T Consensus 208 -------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~ 275 (355)
T 3tjz_B 208 -------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAIV 275 (355)
T ss_dssp -------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHT
T ss_pred -------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 11333444444332 4555566666665655443 21 12356788889999999999999999998
Q ss_pred HhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHH
Q 015687 309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA 388 (402)
Q Consensus 309 nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 388 (402)
.+...+.. .. ..++..|..++.++ ++.+|-.|...|..+....|+.++. .-..+.+++.+++..+.--|
T Consensus 276 ~l~~~~~~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~A 344 (355)
T 3tjz_B 276 NLPGCSAK----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATLA 344 (355)
T ss_dssp C----------------CCCTHHHHHHSS-SSSSHHHHHHCC--------------------------------------
T ss_pred hccCCCHH----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHHH
Confidence 88652221 12 24567788888888 9999999999999998877776543 33456778888888777766
Q ss_pred HHHHHH
Q 015687 389 AWAISN 394 (402)
Q Consensus 389 ~~aL~n 394 (402)
+.+|..
T Consensus 345 ittllk 350 (355)
T 3tjz_B 345 ITTLLK 350 (355)
T ss_dssp ------
T ss_pred HHHhhh
Confidence 666543
No 70
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.07 E-value=2.4e-08 Score=99.40 Aligned_cols=274 Identities=16% Similarity=0.137 Sum_probs=192.8
Q ss_pred HHHHHHhhcCCC--------HHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 015687 73 LPAMVAGVWSDD--------RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144 (402)
Q Consensus 73 i~~l~~~l~s~~--------~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~ 144 (402)
+..|...|.+++ +.++..|+..|.....+..++ .+++.|...|.+++ ...+..|+.+|+.+..
T Consensus 431 ~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e--------ev~e~L~~~L~dd~-~~~~~~AalALGli~v 501 (963)
T 4ady_A 431 TDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI--------EVYEALKEVLYNDS-ATSGEAAALGMGLCML 501 (963)
T ss_dssp HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH--------HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhc
Confidence 455556665544 567777777777764443211 24677888888777 6777789999998755
Q ss_pred CCCcchHHHHhCCchHHHHHhh-CCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHH
Q 015687 145 GTSENTRVVIDHGAVPIFVRLL-SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWT 223 (402)
Q Consensus 145 ~~~~~~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~ 223 (402)
++... .++..|++.+ ++.+..++..++.+|+.+....++ .++.+++.|....++.++..++.+
T Consensus 502 GTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~a 565 (963)
T 4ady_A 502 GTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFT 565 (963)
T ss_dssp TCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHH
T ss_pred ccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 53321 2345555543 456889999999999998776664 577788888667788888888888
Q ss_pred HHHhhhCCCCCchhhhhchHHHHHHhc-cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-CCCChhhHH
Q 015687 224 LSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLI 301 (402)
Q Consensus 224 L~~l~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L-~~~~~~v~~ 301 (402)
+.--+.+..+ ...++.|++.+ .+.+..++..|+.+|+.+..+.++ .++.++.+| .+.++.+|.
T Consensus 566 lglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~ 630 (963)
T 4ady_A 566 IALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRC 630 (963)
T ss_dssp HHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHH
T ss_pred HHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHH
Confidence 8755554222 23455444444 456788999999999998766542 356677654 577899999
Q ss_pred HHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHH----HHHHHHcCCHHHHHHHh
Q 015687 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ----IQAIIEAGIIGPLVNLL 377 (402)
Q Consensus 302 ~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~----~~~l~~~~~i~~L~~ll 377 (402)
.+..++|.++.+++.. .+++.|..++.++ ++.||..|+.+|+.+..++.+. +.. +...|....
T Consensus 631 gAalALGli~aGn~~~-------~aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~-----~l~~L~~~~ 697 (963)
T 4ady_A 631 GTAFALGIACAGKGLQ-------SAIDVLDPLTKDP-VDFVRQAAMIALSMILIQQTEKLNPQVAD-----INKNFLSVI 697 (963)
T ss_dssp HHHHHHHHHTSSSCCH-------HHHHHHHHHHTCS-SHHHHHHHHHHHHHHSTTCCTTTCTTHHH-----HHHHHHHHH
T ss_pred HHHHHHHHhccCCCcH-------HHHHHHHHHccCC-CHHHHHHHHHHHHHHhcCCccccchHHHH-----HHHHHHHHH
Confidence 9999999999887631 2455777888888 9999999999999999865443 333 334456666
Q ss_pred cc--CCHHHHHHHHHHHHHhhcCC
Q 015687 378 LN--AEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 378 ~~--~~~~v~~~a~~aL~nl~~~~ 399 (402)
.+ .|+..+-.|..|.+-+-.||
T Consensus 698 ~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 698 TNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred hcccccHHHHHHHHHHHHHHhcCC
Confidence 54 56788888888888876665
No 71
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.04 E-value=1.7e-07 Score=73.61 Aligned_cols=216 Identities=17% Similarity=0.204 Sum_probs=165.0
Q ss_pred hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCch
Q 015687 112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPK 190 (402)
Q Consensus 112 ~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~ 190 (402)
+..++..++.+|.++- ..++..|+.++..++...++.... .+..|+.+++ ++...+.+....++|.++...|+
T Consensus 30 d~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 30 DESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp CHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence 5568899999998877 699999999999999876765544 3455666654 67777878889999999988776
Q ss_pred hhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhcc
Q 015687 191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 270 (402)
Q Consensus 191 ~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~ 270 (402)
..+. .+|.+..-. .-.++.++-+..++|..+.+.+| ....+++.-+..++.+.|..-+..++..++-+..
T Consensus 104 ~v~~-----vVp~lfany-rigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 104 LVKS-----MIPVLFANY-RIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp HHHH-----HHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred HHHh-----hHHHHHHHH-hcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 3222 344444444 44599999999999999998865 3445677788889998887777777777777776
Q ss_pred CChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHH
Q 015687 271 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 350 (402)
Q Consensus 271 ~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L 350 (402)
+..... ...+|+|..+|.+.+.-+|..|..++++++.-++..+..+. ..+.-+++. +..+++..--.|
T Consensus 174 n~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~-S~lv~~~V~egL 241 (253)
T 2db0_A 174 NSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDT-SSLVNKTVKEGI 241 (253)
T ss_dssp TTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCS-CHHHHHHHHHHH
T ss_pred cCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCc-HHHHHHHHHHHH
Confidence 655432 35789999999999999999999999999999997555433 355566666 777777777777
Q ss_pred HHHhc
Q 015687 351 SNITA 355 (402)
Q Consensus 351 ~nl~~ 355 (402)
+.++.
T Consensus 242 ~rl~l 246 (253)
T 2db0_A 242 SRLLL 246 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77764
No 72
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.98 E-value=7e-09 Score=89.35 Aligned_cols=185 Identities=15% Similarity=0.236 Sum_probs=142.4
Q ss_pred HHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhcc-CCChhHHHHHHHHHHHhccCChHHHHHHH
Q 015687 202 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVI 280 (402)
Q Consensus 202 ~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 280 (402)
+.+...+ .+.+...+..++..|..++...+.........+++.|...+. +.+..++..++.++..++..-.......+
T Consensus 18 ~~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3466777 678899999999999999887332111223577888999995 89999999999999999854322222222
Q ss_pred HhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHH
Q 015687 281 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVN 359 (402)
Q Consensus 281 ~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~ 359 (402)
..+++.++..+.+.+..++..|..++..++.... .. .++|.+...+++. ++.+|..++..|+.+.. ..++
T Consensus 97 -~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 97 -SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp -HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGG
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCC
Confidence 2478999999999999999999999999987543 11 3578899999988 99999999999999765 3333
Q ss_pred H-HHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 360 Q-IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 360 ~-~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
. ....+. .++|.|+.++.+.++++|..|..+++.++.
T Consensus 168 ~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 168 ALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 2 223333 389999999999999999999999998763
No 73
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.93 E-value=4.8e-09 Score=90.39 Aligned_cols=186 Identities=14% Similarity=0.187 Sum_probs=142.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhh
Q 015687 160 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239 (402)
Q Consensus 160 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 239 (402)
+.+...+.+.+...|..++..|..++...+.....-. ..+++.|...+.++.+..++..++.++..|+..-...-....
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4577888999999999999999999865332111000 124556666673377889999999999999976432223455
Q ss_pred hchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCC-hHH-
Q 015687 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD-DMQ- 317 (402)
Q Consensus 240 ~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~-~~~- 317 (402)
..++|.++..+.+.++.++..+..++..+..... .. .+++.+...+.+.++.++..++..|+.+.... +..
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 7899999999999999999999999999886543 12 25788899999999999999999999976543 321
Q ss_pred HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 318 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 318 ~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
....+. .++|.|..++.++ ++.+|..|..+++.++.
T Consensus 170 ~~~~l~-~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 170 NKKLLK-LLTTSLVKTLNEP-DPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CHHHHH-HHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred cHHHHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence 122233 6789999999988 99999999999999986
No 74
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.91 E-value=2.1e-08 Score=86.44 Aligned_cols=191 Identities=13% Similarity=0.185 Sum_probs=141.6
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHH-hhcCCCcchHHHHh-CCchHHHHHhh-CCCCHHHHHHHHHHHHHhhCCC--chhh
Q 015687 118 RFIEFLSRDDFPQLQFEAAWALTN-IASGTSENTRVVID-HGAVPIFVRLL-SSPTDDVREQAVWALGNVAGDS--PKCR 192 (402)
Q Consensus 118 ~L~~lL~~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~-~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~--~~~~ 192 (402)
.+.+.+.+.+ ...|..|+..|.. ++.+.++......+ ..++..|...+ .+.+..++..|+.+|+.++.+- +.+.
T Consensus 20 ~f~~~l~s~~-w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 20 DFQERITSSK-WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp THHHHHTCSS-HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred hHHHHhhcCC-HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc
Confidence 3566678888 7889999999999 88654443210001 13577888888 7899999999999999998432 2232
Q ss_pred -HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhcc
Q 015687 193 -DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 270 (402)
Q Consensus 193 -~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~ 270 (402)
..... +++.++..+ .+....++..+..++..++..- +.........+++.|...|.+.++.++..++.+|..++.
T Consensus 99 ~~y~~~--llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 99 KDYVSL--VFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp HHHHHH--HHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 22222 688888888 6666889999999999999864 222111256789999999999999999999999999885
Q ss_pred CCh---HHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 015687 271 GTN---DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 271 ~~~---~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
... ......+...+++.+..++.+++..+|..|..+++.++.
T Consensus 176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 443 222223335789999999999999999999999999874
No 75
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.87 E-value=1.4e-07 Score=84.69 Aligned_cols=279 Identities=11% Similarity=0.086 Sum_probs=177.5
Q ss_pred HhhcCC--CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHh
Q 015687 78 AGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID 155 (402)
Q Consensus 78 ~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 155 (402)
+.++.. |+.-...++..+..+.....+-+..++ ..+....++++.+.+ ..++.-....+.+++...++. +.
T Consensus 32 r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~--t~lf~~v~kl~~s~d-~~lKrLvYLyl~~~~~~~~e~---iL- 104 (355)
T 3tjz_B 32 RVFNETPINPRKCAHILTKILYLINQGEHLGTTEA--TEAFFAMTKLFQSND-PTLRRMCYLTIKEMSCIAEDV---II- 104 (355)
T ss_dssp GGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHH--HHHHHHHHGGGGCCC-HHHHHHHHHHHHHHTTTSSCG---GG-
T ss_pred HHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHH--HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCCHHHH---HH-
Confidence 455543 454444455444444333323222222 235677789999998 899999888888888763332 22
Q ss_pred CCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCc
Q 015687 156 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235 (402)
Q Consensus 156 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 235 (402)
++..|.+=+.++++-+|-.|+++|+++.... .-+. ..+.+-+.+ .+.++-+++.|+.+...|....|
T Consensus 105 --v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m~~~-----l~~~lk~~L-~d~~pyVRk~A~l~~~kL~~~~p--- 171 (355)
T 3tjz_B 105 --VTSSLTKDMTGKEDSYRGPAVRALCQITDST--MLQA-----IERYMKQAI-VDKVPSVSSSALVSSLHLLKCSF--- 171 (355)
T ss_dssp --GHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT--THHH-----HHHHHHHHH-TCSSHHHHHHHHHHHHHHTTTCH---
T ss_pred --HHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH--HHHH-----HHHHHHHHc-CCCCHHHHHHHHHHHHHHhccCH---
Confidence 5778888889999999999999999996443 1111 344555666 78899999999999999986643
Q ss_pred hhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC---ChhhHHHHHHHHHHhhc
Q 015687 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP---SPSVLIPALRTVGNIVT 312 (402)
Q Consensus 236 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~---~~~v~~~a~~~l~nl~~ 312 (402)
..+.++++.+-.++.+.++.+..+|+.++..+...+... +..++..+... ++-.+...++.++.++.
T Consensus 172 -e~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a---------~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~ 241 (355)
T 3tjz_B 172 -DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLA---------VSKMISKFTRHGLKSPFAYCMMIRVASRQLE 241 (355)
T ss_dssp -HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHH---------HHHHHHHHHSSCCSCHHHHHHHHHHHTCC--
T ss_pred -HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHH---------HHHHHHHHhcCCCcChHHHHHHHHHHHHhcc
Confidence 234678999999999999999999999999998765322 23344444332 45555667777777766
Q ss_pred CC-hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHH
Q 015687 313 GD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA 391 (402)
Q Consensus 313 ~~-~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 391 (402)
.+ +.. ...+++.+..+|++. ++.|.-+|+.++..+...... +. ..++..|..++.++++.+|..|+..
T Consensus 242 ~d~~~~-----~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~ 310 (355)
T 3tjz_B 242 DEDGSR-----DSPLFDFIESCLRNK-HEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRT 310 (355)
T ss_dssp --------------------CCCCCS-SHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHC
T ss_pred ccchhh-----HHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHH
Confidence 54 222 236677888889988 999999999999998652222 22 2245677778888899999998887
Q ss_pred HHHhhc
Q 015687 392 ISNATS 397 (402)
Q Consensus 392 L~nl~~ 397 (402)
|..++.
T Consensus 311 L~~l~~ 316 (355)
T 3tjz_B 311 LNKVAM 316 (355)
T ss_dssp C-----
T ss_pred HHHHHH
Confidence 776654
No 76
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.87 E-value=1.6e-07 Score=76.91 Aligned_cols=186 Identities=15% Similarity=0.131 Sum_probs=151.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
.+..++..|+..|+..+..++.++..+++.. +...+...-..+++.++.++.+.+ +.+...|+.||..+..+.|-...
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCHH
Confidence 5678889999999999999999999999864 334444444557999999999888 99999999999999998776666
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
.+.. ++.+|..++.++++-++..++..++.+---.+ . . +++..+..++ .+.+..++..+..++.+++...
T Consensus 112 ~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~-~-~-----~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 112 TFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED-S-K-----LVRTYINELV-VSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-C-H-----HHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-h-H-----HHHHHHHHHH-hCCChhHHHHHHHHHHHhhccc
Confidence 6664 68899999999999999999999999932221 1 1 2466778888 8999999999999999999874
Q ss_pred CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccC
Q 015687 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG 271 (402)
Q Consensus 232 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~ 271 (402)
. +......++.-+-.+|.+.|+.++.-|+.++-.+...
T Consensus 182 ~--D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 182 A--DSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp S--SCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred C--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 2 2233456667777888999999999999999988765
No 77
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.86 E-value=6.6e-08 Score=79.18 Aligned_cols=188 Identities=19% Similarity=0.203 Sum_probs=150.6
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhH
Q 015687 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193 (402)
Q Consensus 114 g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 193 (402)
+.+..|..+|.+.| +.++..|+.+|..+...-+.......-...++.++.++.+.|..+.-.|+.+|+.|..+.|--..
T Consensus 33 ~~l~~L~~LL~dkD-~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDD-ETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 35888999998888 89999999999999886444444444346899999999999999999999999999988775444
Q ss_pred HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCCh
Q 015687 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 273 (402)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~ 273 (402)
.+.. ....+..++ ..++.-+...++..+.-+- + ......++..+..++.+.|..+...++.++.+++..+.
T Consensus 112 ~y~K--l~~aL~dli-k~~~~il~~eaae~Lgklk---v---~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 112 TFLK--AAKTLVSLL-ESPDDMMRIETIDVLSKLQ---P---LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHH--HHHHHHHHT-TSCCHHHHHHHHHHHHHCC---B---SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHH--HHHHHHHHh-cCCCchHHHHHHHHhCcCC---c---ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 4444 677888888 5888889999999998881 1 12235677888899999999999999999999986544
Q ss_pred HHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCC
Q 015687 274 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 314 (402)
Q Consensus 274 ~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~ 314 (402)
+. -+-.+++.-+-.+|+++++.+++.|+..+-.+.+..
T Consensus 183 D~---~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 183 DS---GHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp SC---CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred CH---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 22 011357788889999999999999999999998753
No 78
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.85 E-value=3.3e-10 Score=87.67 Aligned_cols=121 Identities=18% Similarity=0.167 Sum_probs=93.7
Q ss_pred hchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 015687 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 319 (402)
Q Consensus 240 ~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~ 319 (402)
...++.+..+|.++++.++..++++|+.+... .++.|+..|.++++.+|..|+++|+++.. +
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---- 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H----
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H----
Confidence 56678899999999999999999999876431 15788999999999999999999999863 2
Q ss_pred HHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 320 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 320 ~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
..++.|...+.++ ++.||..|+|+|+++.. ++ .++.|+.++.++++.|+..|+++|.+|
T Consensus 73 -----~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~--~~---------a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 -----RAVEPLIKLLEDD-SGFVRSGAARSLEQIGG--ER---------VRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -----HHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS--HH---------HHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -----HHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--HH---------HHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 2478899999888 99999999999999852 22 578889999999999999999998754
No 79
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.81 E-value=7.8e-08 Score=82.83 Aligned_cols=194 Identities=10% Similarity=0.118 Sum_probs=142.2
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHH-hhCCCchhhHHHHh-cCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC-CCch-
Q 015687 161 IFVRLLSSPTDDVREQAVWALGN-VAGDSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLF- 236 (402)
Q Consensus 161 ~L~~lL~~~~~~v~~~a~~~L~n-l~~~~~~~~~~~~~-~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~- 236 (402)
.+...+.+.+..-|..|+..|+. ++.+.+.......+ ..++..|...+..+.+..++..++.++..++.+-. ..-.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35567788999999999999999 87544332100001 12455666666567788899999999999997644 3333
Q ss_pred hhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-
Q 015687 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD- 315 (402)
Q Consensus 237 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~- 315 (402)
.+...++|.++..+.+..+.|+..+..++..++...+.....-.-..+++.|...|.+.++.++..++.+|+.++....
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 5667899999999998889999988888887775331100000001256888999999999999999999999996544
Q ss_pred --HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 316 --MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 316 --~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
......+...++|.|.+++.++ ++.+|..|.-+++.++.
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 3333344358999999999998 99999999999999875
No 80
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.80 E-value=7.6e-07 Score=89.84 Aligned_cols=304 Identities=13% Similarity=0.144 Sum_probs=218.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCc--
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE-- 148 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~-- 148 (402)
..+..+++.+...+......++..+..++.++ .. ...+..+++..|.+.+.+.. .. +.|+.++..|+.....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~ 87 (986)
T 2iw3_A 14 KVLEELFQKLSVATADNRHEIASEVASFLNGN-II--EHDVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSP 87 (986)
T ss_dssp HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSS-CS--SSSCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCT
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHhcc-cc--ccccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCC
Confidence 34566777777655666678888888887643 11 11222367888888887765 23 8899999999954321
Q ss_pred chHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhh
Q 015687 149 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (402)
Q Consensus 149 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~ 228 (402)
..+.++ .+.+|.++..+.+....++..|..++..++..-+...- ..+++.|+..+.....-+.+..++.++..|+
T Consensus 88 ~~e~~~-~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~ 162 (986)
T 2iw3_A 88 SVEPYI-VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMV 162 (986)
T ss_dssp TTHHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred Ccccch-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 222222 26789999998888899999999888888755443211 2368899999955557788999999999999
Q ss_pred hCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccC--ChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHH
Q 015687 229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG--TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306 (402)
Q Consensus 229 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~--~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~ 306 (402)
...|..-...+..++|.+...+.+..++|...+..++..+|.. +.+. ...+|.|+..+.+++. ...++..
T Consensus 163 ~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~--~~~~~~~ 234 (986)
T 2iw3_A 163 DAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTE--VPETVHL 234 (986)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTH--HHHHHHH
T ss_pred HHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhh--hHHHHHH
Confidence 8754333445588999999999999999999999988888742 2222 2467999999988754 4566777
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHhcc-CCHH
Q 015687 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLN-AEFE 383 (402)
Q Consensus 307 l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~-~~~~ 383 (402)
|+..+.-..-... .+. =++|.|.+-|... ...+++.++-++-|+|. .+|.....++.. ++|.|-...+. .+|+
T Consensus 235 l~~~tfv~~v~~~-~l~-~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~-l~p~~~~~~~~~~~pe 310 (986)
T 2iw3_A 235 LGATTFVAEVTPA-TLS-IMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLGK-LLPGLKSNFATIADPE 310 (986)
T ss_dssp HTTCCCCSCCCHH-HHH-HHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHTT-THHHHHHHTTTCCSHH
T ss_pred hhcCeeEeeecch-hHH-HHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhhh-hhhHHHHHhhccCCHH
Confidence 7666543321111 111 2468888888887 88899999999999997 788888777754 88888887765 7899
Q ss_pred HHHHHHHHHHHhhc
Q 015687 384 IKKEAAWAISNATS 397 (402)
Q Consensus 384 v~~~a~~aL~nl~~ 397 (402)
+|..|..|+..|..
T Consensus 311 ~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 311 AREVTLRALKTLRR 324 (986)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99888888877743
No 81
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.70 E-value=2.8e-09 Score=82.41 Aligned_cols=121 Identities=18% Similarity=0.184 Sum_probs=93.1
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhh
Q 015687 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (402)
Q Consensus 113 ~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (402)
...++.++.+|++++ +.++..|+++|+.+... .++.|+.+|.++++.+|..|+++|+++.. +
T Consensus 11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~--- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E--- 72 (131)
T ss_dssp ----------CCSSC-CCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence 345788999999888 78999999998876431 36899999999999999999999999852 1
Q ss_pred HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHh
Q 015687 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 268 (402)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l 268 (402)
..++.|+..+ .++++.++..++|+|..+.. ...++.|..++.++++.++..++++|..+
T Consensus 73 ------~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 ------RAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ------HHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 2478888888 77889999999999998862 36788999999999999999999988653
No 82
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.69 E-value=8.9e-06 Score=83.87 Aligned_cols=296 Identities=11% Similarity=0.093 Sum_probs=173.9
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHH-HhhcCCCCHHHHHHHHHHHHHhhcCC--Cc---chHHHHh
Q 015687 82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFI-EFLSRDDFPQLQFEAAWALTNIASGT--SE---NTRVVID 155 (402)
Q Consensus 82 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~~~~~~a~~~L~~l~~~~--~~---~~~~~~~ 155 (402)
+++++....++.++...++ --+...+++.++++.+. .+|.. ++++..|+.||..+.... .+ ....+..
T Consensus 206 ~~~~~l~~~~L~~l~s~l~---WI~i~~i~~~~ll~~l~~~~L~~---~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~ 279 (1023)
T 4hat_C 206 GASSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMTS---PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL 279 (1023)
T ss_dssp CSSCHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHHS---HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH---hCCHHHhcchhHHHHHHHHHcCC---HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence 3566777778888888875 35677788899999999 88853 789999999999998732 12 1111111
Q ss_pred C--CchHHH--------------HHhhCCCCHHHHHHHHHHHHHhhC-------CCchhhHHHHhcCChHHHHHHhccch
Q 015687 156 H--GAVPIF--------------VRLLSSPTDDVREQAVWALGNVAG-------DSPKCRDLVLSNGALMPLLAQFNEHA 212 (402)
Q Consensus 156 ~--g~i~~L--------------~~lL~~~~~~v~~~a~~~L~nl~~-------~~~~~~~~~~~~g~i~~L~~~l~~~~ 212 (402)
. +.++.+ ..--...+.+..+..+..+..+.. ..+..+..+. .++..|+.+- ..+
T Consensus 280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~ 356 (1023)
T 4hat_C 280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE 356 (1023)
T ss_dssp HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence 0 111111 111122345666666666654432 1122222221 1233444433 456
Q ss_pred hhHHHHHHHHHHHHhhhCCC-C-Cchhh----hhchHHHHHHhccCCC--------------------hh-HH----HHH
Q 015687 213 KLSMLRNATWTLSNFCRGKP-Q-PLFEQ----TRPALPALERLIHSND--------------------DE-VL----TDA 261 (402)
Q Consensus 213 ~~~~~~~a~~~L~~l~~~~~-~-~~~~~----~~~~l~~L~~lL~~~~--------------------~~-v~----~~a 261 (402)
+.++...++..+..+...-- . ..... ...+++.++.-+..++ ++ .. .++
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~ 436 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence 78888888888777776421 1 11122 2344555555443321 00 11 123
Q ss_pred HHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC---
Q 015687 262 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ--- 336 (402)
Q Consensus 262 ~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~--~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~--- 336 (402)
+..+.++.. ++..+. +++.+...+.+ .++..++.+++++|.++.+..+....-.-..+++.|+.++.+
T Consensus 437 L~~l~~l~~--~~~~~~-----~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~ 509 (1023)
T 4hat_C 437 LVYLTHLNV--IDTEEI-----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG 509 (1023)
T ss_dssp HHHHHHHCH--HHHHHH-----HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHhccCH--HHHHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc
Confidence 322322221 122221 23444444443 578999999999999998765442322333678888888864
Q ss_pred --CCchhHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 337 --NYKKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 337 --~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
+ ...++..++|+++.++. .+++.... ++..|+..+.+++++++..||+++.+|+..+
T Consensus 510 ~d~-k~~v~~t~~~~lGry~~wl~~~~~~L~~-----vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c 571 (1023)
T 4hat_C 510 KDN-KAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKC 571 (1023)
T ss_dssp HHH-HHHHHHHHHHHHHTCHHHHHHCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred Ccc-hHHHHHHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 2 45677789999998875 34554333 5667888888788999999999999998753
No 83
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.67 E-value=6.4e-06 Score=75.70 Aligned_cols=320 Identities=13% Similarity=0.097 Sum_probs=194.1
Q ss_pred cHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCC---ch-hHHhhcC-cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcC
Q 015687 72 SLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSP---PI-NEVIQSG-VVPRFIEFLSRDDFPQLQFEAAWALTNIASG 145 (402)
Q Consensus 72 ~i~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~---~~-~~~~~~g-~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~ 145 (402)
....+++.|.. ...+.....+..+..++..+ + .. ..+.+.. ....+.....+.+++-.+..+..+++.++..
T Consensus 78 ~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~--~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 78 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSD--KYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCS--SSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHHHhcC--cchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 45778888884 66888888889999998753 3 22 2333322 2222333222344245556666666666543
Q ss_pred CCcchHHHHhCCchH--HHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhhHHHHhcC--ChHHHHHHhcc----------
Q 015687 146 TSENTRVVIDHGAVP--IFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNG--ALMPLLAQFNE---------- 210 (402)
Q Consensus 146 ~~~~~~~~~~~g~i~--~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~~L~~~l~~---------- 210 (402)
.+...+.+- ..+. -++..|.+ ++...+..++.+|..+....+ +|..+.+.+ .+++++.++..
T Consensus 156 ~~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~-~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~ 232 (480)
T 1ho8_A 156 GLHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRI 232 (480)
T ss_dssp TTCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred CCccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchh-HHHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence 333211111 1222 34444544 345556678888888887654 788877643 36666654421
Q ss_pred ------chhhHHHHHHHHHHHHhhhCCCCCchhhhhc--hHHHHHHhccC-CChhHHHHHHHHHHHhccCCh----HHHH
Q 015687 211 ------HAKLSMLRNATWTLSNFCRGKPQPLFEQTRP--ALPALERLIHS-NDDEVLTDACWALSYLSDGTN----DKIQ 277 (402)
Q Consensus 211 ------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~l~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~----~~~~ 277 (402)
....+++..++.+++-|+..++......... .++.|+.+++. ..+++..-++.++.|+..... ..+.
T Consensus 233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~ 312 (480)
T 1ho8_A 233 VATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK 312 (480)
T ss_dssp ------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred ccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence 1146778899999999987743111111122 23566666654 468899999999999987652 2222
Q ss_pred -HHHHhCcHHHHHHhcCC---CChhhHHHHHHHHHHhh----------------------cCChHHHH-HHH--------
Q 015687 278 -AVIEAGVCPRLVELLRH---PSPSVLIPALRTVGNIV----------------------TGDDMQTQ-CII-------- 322 (402)
Q Consensus 278 -~~~~~~~i~~L~~~L~~---~~~~v~~~a~~~l~nl~----------------------~~~~~~~~-~i~-------- 322 (402)
.++..++ .+++..|.. .|+++.... ..+.... .-+|.... .+.
T Consensus 313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~edl-~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~ 390 (480)
T 1ho8_A 313 QLLLLGNA-LPTVQSLSERKYSDEELRQDI-SNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFK 390 (480)
T ss_dssp HHHHHHCH-HHHHHHHHSSCCSSHHHHHHH-HHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGS
T ss_pred HHHHHccc-hHHHHHHhhCCCCcHHHHHHH-HHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHH
Confidence 2333444 455666532 344433221 1111111 11111111 111
Q ss_pred --hCCChHHHHHHhcC---------CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHH
Q 015687 323 --NHQALPCLLDLLTQ---------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA 391 (402)
Q Consensus 323 --~~~~l~~L~~ll~~---------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 391 (402)
+..++..|+++|.+ +.++.+..-||.=++.++.+.|..+..+-+.|+-..+++++.++|++|+.+|+.|
T Consensus 391 e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~a 470 (480)
T 1ho8_A 391 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKA 470 (480)
T ss_dssp SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence 12467889999973 2278899999999999999888887777788999999999999999999999999
Q ss_pred HHHhhcC
Q 015687 392 ISNATSG 398 (402)
Q Consensus 392 L~nl~~~ 398 (402)
+..+..+
T Consensus 471 vQklm~~ 477 (480)
T 1ho8_A 471 TQAIIGY 477 (480)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9887653
No 84
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.57 E-value=5.1e-06 Score=76.31 Aligned_cols=234 Identities=14% Similarity=0.120 Sum_probs=158.1
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCC--chHHHHHhhC----C-------------CCHHHHHHHH
Q 015687 118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG--AVPIFVRLLS----S-------------PTDDVREQAV 178 (402)
Q Consensus 118 ~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~lL~----~-------------~~~~v~~~a~ 178 (402)
.++..|........+..++.+|..+... ++.|..+.+.+ .++.++.++. + ....++-+++
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 4566666532256678899999999885 88888887653 3666654332 1 1356788889
Q ss_pred HHHHHhhCCCchhhHHHHhcCCh--HHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchh-----hh-hchHHHHHHhc
Q 015687 179 WALGNVAGDSPKCRDLVLSNGAL--MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE-----QT-RPALPALERLI 250 (402)
Q Consensus 179 ~~L~nl~~~~~~~~~~~~~~g~i--~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-----~~-~~~l~~L~~lL 250 (402)
.+++-++.+.+ ..+.+...++. ..|+.++.....+.+.+-++.+|.|+....+..... .. .++ +.++..|
T Consensus 250 l~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L 327 (480)
T 1ho8_A 250 LLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSL 327 (480)
T ss_dssp HHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHH
T ss_pred HHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHH
Confidence 99998887766 44555555543 567777867778999999999999999875322221 11 234 4455555
Q ss_pred cC---CChhHHHHHHHHHHHhcc---------------------CChHH-HHHHHH----------hCcHHHHHHhcCC-
Q 015687 251 HS---NDDEVLTDACWALSYLSD---------------------GTNDK-IQAVIE----------AGVCPRLVELLRH- 294 (402)
Q Consensus 251 ~~---~~~~v~~~a~~~l~~l~~---------------------~~~~~-~~~~~~----------~~~i~~L~~~L~~- 294 (402)
.. +|+++..+.-.....|-. .++.. -+.+.. ..++..|+.+|.+
T Consensus 328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~ 407 (480)
T 1ho8_A 328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK 407 (480)
T ss_dssp HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence 33 577766554332222211 11100 001111 1357788888863
Q ss_pred ---------CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 295 ---------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 295 ---------~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
.++.+..-||.=||.++...|..+..+-+.|+-..++.++.++ +++||.+|..++.-+..
T Consensus 408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~-d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 3577888899999999999998888777889999999999999 99999999999987754
No 85
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.39 E-value=5.4e-05 Score=78.34 Aligned_cols=305 Identities=10% Similarity=0.060 Sum_probs=163.0
Q ss_pred CCCHHHHHHHHHHHHHHhccCC--CCchhHH-hhcCcHHH----HHHhhcCC--CCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 82 SDDRNIQLDATTQFRKLLSIER--SPPINEV-IQSGVVPR----FIEFLSRD--DFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 82 s~~~~~~~~a~~~l~~l~s~~~--~~~~~~~-~~~g~i~~----L~~lL~~~--~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
+++...+..|+.++..++.+.. ..+.... ....+.+. ++..|.++ .++.+|..|+|+++.++..- ...
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~- 492 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKA- 492 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHH-
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHH-
Confidence 5667788889999988864320 1111100 00012222 33344555 13899999999999998752 122
Q ss_pred HHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-------chh-hHHHHh--cCChHHHHHHhccc----hhhHHHH
Q 015687 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-------PKC-RDLVLS--NGALMPLLAQFNEH----AKLSMLR 218 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-------~~~-~~~~~~--~g~i~~L~~~l~~~----~~~~~~~ 218 (402)
.. ..+++.++..|.+++..|+..|+++|.+++... +.+ +..+.. ..+++.|+.++... .+.....
T Consensus 493 ~l-~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e 571 (960)
T 1wa5_C 493 QL-IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE 571 (960)
T ss_dssp HH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred HH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence 22 247888999888889999999999999998631 121 222211 11344445555332 1111234
Q ss_pred HHHHHHHHhhhCCCCCchhhhhchHHHHHHhcc----C-CChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhc
Q 015687 219 NATWTLSNFCRGKPQPLFEQTRPALPALERLIH----S-NDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL 292 (402)
Q Consensus 219 ~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~----~-~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~~L 292 (402)
.+..++..++...+..-..+...+++.+...+. + +++.....++.+++.++.. .++... -+...+++.+...|
T Consensus 572 ~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~~~~~~~p~~~~iL 650 (960)
T 1wa5_C 572 FLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTFLTVF 650 (960)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHHH
Confidence 555666555543322223344455555555542 2 3567777788888888765 222222 23344667777777
Q ss_pred CCCChhhHHHHHHHHHHhhcCC----h---HHHHHHH------hCCCh---------------------HHHH----HHh
Q 015687 293 RHPSPSVLIPALRTVGNIVTGD----D---MQTQCII------NHQAL---------------------PCLL----DLL 334 (402)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~~----~---~~~~~i~------~~~~l---------------------~~L~----~ll 334 (402)
..........++.+++.+.... + .....+. ..|.+ +.+. +++
T Consensus 651 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~ 730 (960)
T 1wa5_C 651 SEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLI 730 (960)
T ss_dssp HTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHH
T ss_pred HhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHHHhcCCCCchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 6555555656666655554211 0 0000000 00111 2222 233
Q ss_pred cCCCchhHHHHHHHHHHHHhcCCHHH-HHHHHHcCCHHHHHHHhccC-CHHHHHHHHHHHHHh
Q 015687 335 TQNYKKSIKKEACWTISNITAGNVNQ-IQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNA 395 (402)
Q Consensus 335 ~~~~~~~v~~~a~~~L~nl~~~~~~~-~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl 395 (402)
.+. . ....++++++.++...+.. ....+.. +++.++..+... ..++++..+..++.+
T Consensus 731 ~~~-~--~~~~a~~ll~~i~~~~~~~~~~~yl~~-i~~~l~~~l~~~~~~~~~~~~l~~~~~~ 789 (960)
T 1wa5_C 731 ASK-A--YEVHGFDLLEHIMLLIDMNRLRPYIKQ-IAVLLLQRLQNSKTERYVKKLTVFFGLI 789 (960)
T ss_dssp TCT-T--THHHHHHHHHHHHHHSCHHHHGGGHHH-HHHHHHHGGGSSCCHHHHHHHHHHHHHH
T ss_pred CCC-c--ccchHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHhhCCcHhHHHHHHHHHHHH
Confidence 333 2 2478999999888744444 4444443 666777777654 456665555555444
No 86
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.34 E-value=1.3e-05 Score=70.06 Aligned_cols=157 Identities=14% Similarity=0.105 Sum_probs=126.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
...+++.|++++......++..|..+++.+ .....+++..+++..|+......+ ...+..++.+|.++... ......
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D-~~Fa~EFI~~~GL~~Li~vi~~~~-gN~q~Y~L~AL~~LM~~-v~Gm~g 196 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQED-KDLVPEFVHSEGLSCLIRVGAAAD-HNYQSYILRALGQLMLF-VDGMLG 196 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTC-TTHHHHHHHTTHHHHHHHHHTTSC-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcc-hHHHHHHHHhccHHHHHHHHHhcC-hHHHHHHHHHHHHHHhc-cccccc
Confidence 467888999888889999999999977754 788899999999999999999887 89999999999999986 444444
Q ss_pred HH-hCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhc--------C--ChHHHHHHhc--cchhhHHHHH
Q 015687 153 VI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN--------G--ALMPLLAQFN--EHAKLSMLRN 219 (402)
Q Consensus 153 ~~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~--------g--~i~~L~~~l~--~~~~~~~~~~ 219 (402)
++ ....|..+..++.+.+..|...|+..|..++..++.....+.+. | .+..++.+|. ...|.+++.+
T Consensus 197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~ 276 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY 276 (339)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence 44 44678889999999999999999999999987776444443321 1 3778899994 2568889999
Q ss_pred HHHHHHHhhhCCC
Q 015687 220 ATWTLSNFCRGKP 232 (402)
Q Consensus 220 a~~~L~~l~~~~~ 232 (402)
+...+-.+....|
T Consensus 277 amtLIN~lL~~ap 289 (339)
T 3dad_A 277 TVTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHHHHHhcCC
Confidence 8888877776644
No 87
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.33 E-value=0.00012 Score=75.85 Aligned_cols=257 Identities=9% Similarity=0.049 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhC------CCCHHHHHHHHHHHHHhhCCCchhhHHHH---h-cC
Q 015687 130 QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS------SPTDDVREQAVWALGNVAGDSPKCRDLVL---S-NG 199 (402)
Q Consensus 130 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~------~~~~~v~~~a~~~L~nl~~~~~~~~~~~~---~-~g 199 (402)
..+..|..+|..++...+ +.++. .+++.+...+. +++...++.|+.+++.++........... . ..
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 456677777777776422 22221 23444444454 56778999999999999854211100000 0 01
Q ss_pred ChH----HHHHHhccch---hhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCC
Q 015687 200 ALM----PLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (402)
Q Consensus 200 ~i~----~L~~~l~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~ 272 (402)
..+ .++..+ .++ ++-++..++|+++.++..- .......+++.++..|.+++..|+..|++++.+++...
T Consensus 452 l~~~l~~~v~p~l-~~~~~~~p~vr~~a~~~lg~~~~~~---~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~ 527 (960)
T 1wa5_C 452 VVDFFTKEIAPDL-TSNNIPHIILRVDAIKYIYTFRNQL---TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIR 527 (960)
T ss_dssp HHHHHHHHTHHHH-HCSSCSCHHHHHHHHHHHHHTGGGS---CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHhHHHh-cCCCCCCceehHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence 112 223334 333 7889999999999999874 23456788999999998888999999999999988631
Q ss_pred h-----------HHHHHHHHhCcHHHHHHhcCCCC-----hhhHHHHHHHHHHhhcCCh----HHHHHHHhCCChHHHHH
Q 015687 273 N-----------DKIQAVIEAGVCPRLVELLRHPS-----PSVLIPALRTVGNIVTGDD----MQTQCIINHQALPCLLD 332 (402)
Q Consensus 273 ~-----------~~~~~~~~~~~i~~L~~~L~~~~-----~~v~~~a~~~l~nl~~~~~----~~~~~i~~~~~l~~L~~ 332 (402)
+ +.....+ ..+++.|..++.... ......++.+|+.++.... .+...++. .++..+..
T Consensus 528 ~~~~~~~~~~~~~~l~p~l-~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~-~L~~~l~~ 605 (960)
T 1wa5_C 528 ESNTSPAFIFHKEDISNST-EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLA-QFIEIVTI 605 (960)
T ss_dssp SCSSSCCBSSCGGGTTTTH-HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHH-HHHHHHHH
T ss_pred cccccccccccHHHhhhhH-HHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHH
Confidence 1 1111111 135566666665531 1133566667766654211 12222221 12222222
Q ss_pred HhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 333 LLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 333 ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
..+++.++..+..++-+++.++.. .++....+.+ .++|.+..+|.....+....+...+..+..
T Consensus 606 ~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~-~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 606 MAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVD-SMMPTFLTVFSEDIQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHH-HHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHH-HHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 233443667777788888888864 4554444444 378999999987666777777777776654
No 88
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.25 E-value=0.00079 Score=70.30 Aligned_cols=297 Identities=11% Similarity=0.106 Sum_probs=165.0
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHH-hhcCCCCHHHHHHHHHHHHHhhcCCC-cc----hHHHHh-
Q 015687 83 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIE-FLSRDDFPQLQFEAAWALTNIASGTS-EN----TRVVID- 155 (402)
Q Consensus 83 ~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~~~~~~a~~~L~~l~~~~~-~~----~~~~~~- 155 (402)
++..++..++.++..+++ -.+...+.+..+++.+.+ ++. + ++++..|+.||..+..... .. ...+..
T Consensus 207 ~~~~~~~~aL~~l~~~l~---wi~~~~~~~~~ll~~l~~~~l~--~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l 280 (1049)
T 3m1i_C 207 SSSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF 280 (1049)
T ss_dssp CCHHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh---hCCHHHHhhhhHHHHHHHHhCC--C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Confidence 456777788888887764 233445666778888874 443 4 7999999999999987521 11 111111
Q ss_pred -CCchHHHHH-hh-------------CCCCHHHHHHHHHHHHHhhC-------CCchhhHHHHhcCChHHHHHHhccchh
Q 015687 156 -HGAVPIFVR-LL-------------SSPTDDVREQAVWALGNVAG-------DSPKCRDLVLSNGALMPLLAQFNEHAK 213 (402)
Q Consensus 156 -~g~i~~L~~-lL-------------~~~~~~v~~~a~~~L~nl~~-------~~~~~~~~~~~~g~i~~L~~~l~~~~~ 213 (402)
.+++..+.. ++ .+.+.+.....+..+..+.. ..+..+..+ ..+++.++... ..++
T Consensus 281 ~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d 357 (1049)
T 3m1i_C 281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEE 357 (1049)
T ss_dssp HHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSC
T ss_pred HHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCc
Confidence 122222222 11 12344444455555543321 111122222 12455555554 4557
Q ss_pred hHHHHHHHHHHHHhhh----CCCCC--chhhhhchHHHHHHhccCC-------------------Ch---hHHHHHHHHH
Q 015687 214 LSMLRNATWTLSNFCR----GKPQP--LFEQTRPALPALERLIHSN-------------------DD---EVLTDACWAL 265 (402)
Q Consensus 214 ~~~~~~a~~~L~~l~~----~~~~~--~~~~~~~~l~~L~~lL~~~-------------------~~---~v~~~a~~~l 265 (402)
.++...++..+..+++ ..... .......+++.++..+..+ |. ..+..+..+|
T Consensus 358 ~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L 437 (1049)
T 3m1i_C 358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL 437 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHH
Confidence 7888888888888877 32111 1123355566666655321 00 1222344455
Q ss_pred HHhccCChHHHHHHHHhCcHHHHHHhcC--CCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC-----CC
Q 015687 266 SYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-----NY 338 (402)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~i~~L~~~L~--~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~-----~~ 338 (402)
..++......+- .-+.+.+-..+. +.++..++.+++++|.++.+.......-.-..+++.+..+... +
T Consensus 438 ~~l~~~~~~~~l----~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~- 512 (1049)
T 3m1i_C 438 VYLTHLNVIDTE----EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN- 512 (1049)
T ss_dssp HHHHHHCHHHHH----HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH-
T ss_pred HHHHccCHHHHH----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc-
Confidence 555432221111 112344444454 3578889999999999986544321111111344455554332 2
Q ss_pred chhHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 339 KKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 339 ~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
.+.++..++|+++.++. .+++.... +++.|+..+.++++.|+..|++++.+++..
T Consensus 513 ~~~v~~~~~~~lgry~~~~~~~~~~l~~-----vl~~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 513 KAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 45566679999998875 23333222 577788888888999999999999999864
No 89
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.15 E-value=5.2e-05 Score=78.62 Aligned_cols=302 Identities=10% Similarity=0.040 Sum_probs=170.2
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHh-------hcCCCC--HHHHHHHHHHHHHhhcCCCcch---
Q 015687 83 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEF-------LSRDDF--PQLQFEAAWALTNIASGTSENT--- 150 (402)
Q Consensus 83 ~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~l-------L~~~~~--~~~~~~a~~~L~~l~~~~~~~~--- 150 (402)
++++.+..|+.++..+++..........+. .+++.++.+ +...+. ++.....+..+..++.......
T Consensus 256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 334 (971)
T 2x1g_F 256 DENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG 334 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999999987531111111111 123443332 223331 2666666777776664212110
Q ss_pred ---------HHHHhCCchHHHHHhhCC-----CCHHHHHHHHHHHHHhhCC---------CchhhHHHHh--cCChHHHH
Q 015687 151 ---------RVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGD---------SPKCRDLVLS--NGALMPLL 205 (402)
Q Consensus 151 ---------~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~---------~~~~~~~~~~--~g~i~~L~ 205 (402)
..+. ..++.++.+... .++++...+++.+..++.+ .+.....+.. ...++.++
T Consensus 335 ~~~~~~~~~~~l~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 412 (971)
T 2x1g_F 335 ITSADPELSILVH--RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV 412 (971)
T ss_dssp HHTCCHHHHHHHH--HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH
T ss_pred hccCcccccHHHH--HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 1111 345566665533 4778899999998887641 1111111111 12344444
Q ss_pred HHhccchh--------------hHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccC-----CChhHHHHHHHHHH
Q 015687 206 AQFNEHAK--------------LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-----NDDEVLTDACWALS 266 (402)
Q Consensus 206 ~~l~~~~~--------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~-----~~~~v~~~a~~~l~ 266 (402)
..+...++ ...+..+..++..++...+ ......+++.+...+.+ .+...++.++.+++
T Consensus 413 ~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~ 489 (971)
T 2x1g_F 413 RKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQ 489 (971)
T ss_dssp HHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence 44421111 1355667777777775433 23334444555555543 56778999999999
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHH
Q 015687 267 YLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE 345 (402)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~i~~L~~~L~-~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~ 345 (402)
.++.+........+. .+++.+..+.. +..+.++..+++++|.++..-....+ .+. .+++.|+..|+ +.++..
T Consensus 490 ~iae~~~~~~~~~l~-~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l~-~vl~~l~~~l~----~~v~~~ 562 (971)
T 2x1g_F 490 SVAEHFGGEEKRQIP-RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YIP-PAINLLVRGLN----SSMSAQ 562 (971)
T ss_dssp HTTTC------CHHH-HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHH-HHHHHHHHHHH----SSCHHH
T ss_pred HHHhhcChhhhHHHH-HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HHH-HHHHHHHHHhC----hHHHHH
Confidence 998775533211111 12332222222 34788999999999999853221111 111 34566666662 679999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHhhcC
Q 015687 346 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 346 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~~ 398 (402)
|++++.+++......+...++. ++..|..++.. .+.+.+..+..+++.++..
T Consensus 563 A~~al~~l~~~~~~~l~p~~~~-ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 563 ATLGLKELCRDCQLQLKPYADP-LLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccccHHH-HHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 9999999998666666665554 77888888887 3578899999999888753
No 90
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.12 E-value=2e-05 Score=81.07 Aligned_cols=304 Identities=11% Similarity=0.014 Sum_probs=167.8
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCc--chHHHHhCCc
Q 015687 81 WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE--NTRVVIDHGA 158 (402)
Q Consensus 81 ~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~g~ 158 (402)
.+.++.....++.++...++ -.+...++..++++.+.++|.+ ++++..|+.||..|...... ....++..=.
T Consensus 203 ~~~~~~l~~~~L~~l~s~i~---wi~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~ 276 (980)
T 3ibv_A 203 NAKNYGTVGLCLQVYAQWVS---WININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILN 276 (980)
T ss_dssp HTTCHHHHHHHHHHHHHHTT---TSCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHh---hcCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHh
Confidence 34778888899999999985 3566777788899999999865 78999999999999875433 1122222100
Q ss_pred hHHHHHhhC--CCCHHHHHHHHHHHHHhh------CCCc-----hhhHH--HHhcCChHHHHHHhccchhhHHHHHHHHH
Q 015687 159 VPIFVRLLS--SPTDDVREQAVWALGNVA------GDSP-----KCRDL--VLSNGALMPLLAQFNEHAKLSMLRNATWT 223 (402)
Q Consensus 159 i~~L~~lL~--~~~~~v~~~a~~~L~nl~------~~~~-----~~~~~--~~~~g~i~~L~~~l~~~~~~~~~~~a~~~ 223 (402)
+...+.-+. ..|.+..+..+..+..++ ...+ +.+.. -.-.+.++.++.++ .+++.++...++.+
T Consensus 277 L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~F 355 (980)
T 3ibv_A 277 LNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPF 355 (980)
T ss_dssp HHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHH
Confidence 111122122 467776655554443332 1111 10100 11124777778887 55566777767666
Q ss_pred HHHhhhCC---CC----Cc--hhhhhchHHHHHHhccCC-----C-----------hhHHHHHHHHHHHh-ccCChHH-H
Q 015687 224 LSNFCRGK---PQ----PL--FEQTRPALPALERLIHSN-----D-----------DEVLTDACWALSYL-SDGTNDK-I 276 (402)
Q Consensus 224 L~~l~~~~---~~----~~--~~~~~~~l~~L~~lL~~~-----~-----------~~v~~~a~~~l~~l-~~~~~~~-~ 276 (402)
+..+.... +. .. ......+++.++.-+..+ + .+.|.... .+... +.-.++. .
T Consensus 356 w~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l 434 (980)
T 3ibv_A 356 LSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFS 434 (980)
T ss_dssp HHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHH
Confidence 66655321 11 11 123345555555555321 1 12344444 33222 2212211 1
Q ss_pred HHHHHhCcHHHHHHhcC---CCChhhHHHHHHHHHHhhcCChHHHHHHH-h----CCChHHHHHHhc-----CCCchhHH
Q 015687 277 QAVIEAGVCPRLVELLR---HPSPSVLIPALRTVGNIVTGDDMQTQCII-N----HQALPCLLDLLT-----QNYKKSIK 343 (402)
Q Consensus 277 ~~~~~~~~i~~L~~~L~---~~~~~v~~~a~~~l~nl~~~~~~~~~~i~-~----~~~l~~L~~ll~-----~~~~~~v~ 343 (402)
..+.+ -+.+.+...+. +.++..++.++.+++.++.+-......+. . ..+++.+..+++ .+ .|.|+
T Consensus 435 ~~~~~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~ 512 (980)
T 3ibv_A 435 SYMYS-AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQ 512 (980)
T ss_dssp HHHHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHH
T ss_pred HHHHH-HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHH
Confidence 11111 11222333342 34578899999999999886442111110 0 123455556654 44 78999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh------ccCCHHHHHHHHHHHHHhhcCCC
Q 015687 344 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL------LNAEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 344 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll------~~~~~~v~~~a~~aL~nl~~~~~ 400 (402)
..++|+++..+.--.. ....++.++..+ .+++.+|+..|+.++.+++..+.
T Consensus 513 ~~~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 513 LLYMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp HHHHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence 9999999998862111 112344444443 44678899999999999987543
No 91
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.11 E-value=0.0011 Score=67.18 Aligned_cols=265 Identities=11% Similarity=0.093 Sum_probs=176.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCC-CCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIER-SPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
.+..+.+.+...... ..|+..+..++.... .++... .--+.+|.+++.+.+.. ..++..|..++..++..-+...
T Consensus 55 ~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~dk~-~~v~~aa~~~~~~~~~~~~~~a 130 (986)
T 2iw3_A 55 FFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEP-YIVQLVPAICTNAGNKD-KEIQSVASETLISIVNAVNPVA 130 (986)
T ss_dssp HHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHH-HHHTTHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCccc-chHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhCCHHH
Confidence 345555555543222 777888888764331 233332 22257899999988877 7899888888777766333322
Q ss_pred HHHHhCCchHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 151 RVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
- ..++|.|+..|.+. ....+..|+.++..++...+..-...+ ..++|.+...+ -+..+++...+..++..+|.
T Consensus 131 ~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~-~d~k~~v~~~~~~~~~~~~~ 204 (986)
T 2iw3_A 131 I----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRM-PELIPVLSETM-WDTKKEVKAAATAAMTKATE 204 (986)
T ss_dssp H----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHH-HHHHHHHHHHT-TCSSHHHHHHHHHHHHHHGG
T ss_pred H----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhc-cchhcchHhhc-ccCcHHHHHHHHHHHHHHHh
Confidence 2 24689999988754 688999999999999976553211111 12566666666 67788999999999999997
Q ss_pred CCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 015687 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~n 309 (402)
--.+.+ +.+.+|.|++.+.+++. ...++..|+.-+.-.......+ +=++|.|..-|......+...++-++.|
T Consensus 205 ~~~n~d---~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n 277 (986)
T 2iw3_A 205 TVDNKD---IERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATL--SIMVPLLSRGLNERETGIKRKSAVIIDN 277 (986)
T ss_dssp GCCCTT---TGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHH
T ss_pred cCCCcc---hhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhH--HHHHHHHHhhhccCcchhheeeEEEEcc
Confidence 654433 36789999999977743 4455555555443221111111 0135777777888888888999999999
Q ss_pred hhc--CChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 015687 310 IVT--GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354 (402)
Q Consensus 310 l~~--~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 354 (402)
+|. .++.....+ -..++|-+-+....-.+|++|.-|-.++..|.
T Consensus 278 ~~~lv~~~~~~~~f-~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 278 MCKLVEDPQVIAPF-LGKLLPGLKSNFATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp HHTTCCCHHHHHHH-HTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred hhhhcCCHHHHhhh-hhhhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 996 344444433 45888888888877668999988877777663
No 92
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=98.09 E-value=0.0037 Score=64.54 Aligned_cols=297 Identities=12% Similarity=0.130 Sum_probs=165.6
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHH-HHhhcCCCCHHHHHHHHHHHHHhhcCCC-cchHHHHh--CC
Q 015687 82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF-IEFLSRDDFPQLQFEAAWALTNIASGTS-ENTRVVID--HG 157 (402)
Q Consensus 82 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L-~~lL~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~--~g 157 (402)
+++++....++.++..+++ --+...+++.++++.+ ..+|. + +.++..|+.||+.|.+... +....+.. .+
T Consensus 218 ~~~~~lv~~~L~~L~~~~s---WI~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~ 291 (1073)
T 3gjx_A 218 SQNAPLVHATLETLLRFLN---WIPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL 291 (1073)
T ss_dssp CCCHHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHH---hcCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 4677888888899999875 3467788889999988 47764 3 7899999999999887422 22222211 01
Q ss_pred chHHHHHhh-------------CCCCHHHHHHHHHHHHHhhCC-------CchhhHHHHhcCChHHHHHHhccchhhHHH
Q 015687 158 AVPIFVRLL-------------SSPTDDVREQAVWALGNVAGD-------SPKCRDLVLSNGALMPLLAQFNEHAKLSML 217 (402)
Q Consensus 158 ~i~~L~~lL-------------~~~~~~v~~~a~~~L~nl~~~-------~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~ 217 (402)
.+..+..++ .+.+.+....-+..+..+... .|..+..+.. ++..++.+- ..++.++.
T Consensus 292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~--~l~~ll~~s-~~~d~ei~ 368 (1073)
T 3gjx_A 292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALME--ALHYMLLVS-EVEETEIF 368 (1073)
T ss_dssp HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHH--HHHHHHHHT-TCSCHHHH
T ss_pred HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHH--HHHHHHHHh-CCCcHHHH
Confidence 222222222 112334444455555544321 1211222111 233344433 55688888
Q ss_pred HHHHHHHHHhhhC----CC-----CC------------chhhhhchH----HHHHHhccCCC------------------
Q 015687 218 RNATWTLSNFCRG----KP-----QP------------LFEQTRPAL----PALERLIHSND------------------ 254 (402)
Q Consensus 218 ~~a~~~L~~l~~~----~~-----~~------------~~~~~~~~l----~~L~~lL~~~~------------------ 254 (402)
+.+...+..|... .+ .+ ......+++ ..++.-+..++
T Consensus 369 kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~ 448 (1073)
T 3gjx_A 369 KICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMK 448 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECS
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHh
Confidence 8887776666542 11 00 011112333 33333332211
Q ss_pred --h-----hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CChhhHHHHHHHHHHhhcCChHHHH-HHHhC
Q 015687 255 --D-----EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQ-CIINH 324 (402)
Q Consensus 255 --~-----~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~--~~~~v~~~a~~~l~nl~~~~~~~~~-~i~~~ 324 (402)
. ++..+++..+.++. .++.... ..+.+...+.. .++...+.++|++|.++..-.+... .++ .
T Consensus 449 d~~~~~ly~~mrd~L~~lt~l~--~~~~~~i-----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L-p 520 (1073)
T 3gjx_A 449 DTDSINLYKNMRETLVYLTHLD--YVDTEII-----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL-V 520 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHC--HHHHHHH-----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-H
T ss_pred hcchHHHHHHHHHHHHHHhcCC--HHHHHHH-----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH-H
Confidence 0 12223332233222 1222221 23445444443 3588899999999999754433222 222 2
Q ss_pred CChHHHHHHhcCCC----chhHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 325 QALPCLLDLLTQNY----KKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 325 ~~l~~L~~ll~~~~----~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
.+++.|+.+..++. .+.++...+|+++..+. .+++.... ++..|++.+.+.++.|+..||.|+..++.
T Consensus 521 ~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 521 TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 56667777765441 23466677899998775 34444433 56788888888999999999999999987
Q ss_pred CCC
Q 015687 398 GGS 400 (402)
Q Consensus 398 ~~~ 400 (402)
.+.
T Consensus 596 ~C~ 598 (1073)
T 3gjx_A 596 KCR 598 (1073)
T ss_dssp HTG
T ss_pred HHH
Confidence 654
No 93
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.05 E-value=0.00038 Score=72.16 Aligned_cols=251 Identities=10% Similarity=0.105 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHH
Q 015687 131 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 205 (402)
Q Consensus 131 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~ 205 (402)
.+..+..+|..++...++. +.. -+++.+...+.+ .+...++.++++++.++....... ...++.++
T Consensus 437 ~R~~~~~~l~~~~~~~~~~---~l~-~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~ 507 (971)
T 2x1g_F 437 YRQDISDTFMYCYDVLNDY---ILE-ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLM 507 (971)
T ss_dssp HHHHHHHHHHHHHTTCTTH---HHH-HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHH---HHH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHH
Confidence 4556666777766543311 111 122333333332 567789999999999987654321 12344444
Q ss_pred HHh---cc-chhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHH
Q 015687 206 AQF---NE-HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 281 (402)
Q Consensus 206 ~~l---~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 281 (402)
.++ .. +.++.++..++|+++.++..-.. .......+++.++..| + +.++..|++++.+++..........+
T Consensus 508 ~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~-~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~- 582 (971)
T 2x1g_F 508 RVLAEIPYEKLNVKLLGTALETMGSYCNWLME-NPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYA- 582 (971)
T ss_dssp HHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHH-
T ss_pred HHHHhcCccccCHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccH-
Confidence 433 21 24788999999999999976422 1255678888888888 2 78999999999999965543332222
Q ss_pred hCcHHHHHHhcCC--CChhhHHHHHHHHHHhhcCCh-HHHHHHHhCCChHHHHH----HhcCCC-chhHHHHHHHHHHHH
Q 015687 282 AGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLD----LLTQNY-KKSIKKEACWTISNI 353 (402)
Q Consensus 282 ~~~i~~L~~~L~~--~~~~v~~~a~~~l~nl~~~~~-~~~~~i~~~~~l~~L~~----ll~~~~-~~~v~~~a~~~L~nl 353 (402)
..++..+..++.. .+...+..++.+++.++..-+ +.....+. .+++.++. +++... ++.-+.....++..|
T Consensus 583 ~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L 661 (971)
T 2x1g_F 583 DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMI 661 (971)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Confidence 2456667777766 356788899999999986432 22222222 23334443 333321 222344444444444
Q ss_pred hc-----CC-----------HHHHHHHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHhhc
Q 015687 354 TA-----GN-----------VNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATS 397 (402)
Q Consensus 354 ~~-----~~-----------~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~ 397 (402)
+. +. ++....+. ..+++.+..++.. .+..+.+.++++++.++.
T Consensus 662 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 662 STLFSSLNTDVDEQATDQPIVQPVLLVM-QRTMPIFKRIAEMWVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp HHHHHHHTC-------------CCHHHH-HTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCcCcccccccCCCchHHHH-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 32 11 11122222 3488888888865 367999999999998654
No 94
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.01 E-value=7.1e-05 Score=65.46 Aligned_cols=154 Identities=15% Similarity=0.125 Sum_probs=120.3
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHH-
Q 015687 244 PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII- 322 (402)
Q Consensus 244 ~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~- 322 (402)
..+++-|.+.+...+..++.-|..+...+.+....++..+++..|+....+.+...+..++++++++....+ ...-++
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~-Gm~gvvs 199 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVD-GMLGVVA 199 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHH-HHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccc-cccchhC
Confidence 345566677888889999999998665677788999999999999999999999999999999999998644 343444
Q ss_pred hCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--------cC--CHHHHHHHhc---cCCHHHHHHHH
Q 015687 323 NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE--------AG--IIGPLVNLLL---NAEFEIKKEAA 389 (402)
Q Consensus 323 ~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~~--~i~~L~~ll~---~~~~~v~~~a~ 389 (402)
...++..+..++.+. +..|.+.|...|..++..++.....+.+ .| .++.|+.+|+ +.|.+++..|.
T Consensus 200 ~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 200 HSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 446788899999976 8999999999999998755433333222 11 3789999997 68899999988
Q ss_pred HHHHHhhcCC
Q 015687 390 WAISNATSGG 399 (402)
Q Consensus 390 ~aL~nl~~~~ 399 (402)
..|-.+..++
T Consensus 279 tLIN~lL~~a 288 (339)
T 3dad_A 279 TLINKTLAAL 288 (339)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 8776665544
No 95
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.97 E-value=0.00018 Score=74.46 Aligned_cols=306 Identities=11% Similarity=0.071 Sum_probs=166.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHh----h--cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCC
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI----Q--SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 147 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~----~--~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~ 147 (402)
+.+++.+ ++++.+..|+.++..+++....+.....+ . .+..+.+.+.+...+ .+.....+..+..++...+
T Consensus 244 ~~l~~~l--~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d-~~~~~~~~~l~~~~~~~~~ 320 (963)
T 2x19_B 244 QAAFAAL--QDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD-METSHGICRIAVALGENHS 320 (963)
T ss_dssp HHHHHHT--TSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh--CCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHhH
Confidence 3444444 35667788999999998753111111111 0 011222222334444 4555556666666554211
Q ss_pred c-------chHHHHhCCchHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCC--------chhhHHHHh--cCChHHHH
Q 015687 148 E-------NTRVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDS--------PKCRDLVLS--NGALMPLL 205 (402)
Q Consensus 148 ~-------~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~--------~~~~~~~~~--~g~i~~L~ 205 (402)
. ....+. +.++.++.+... .++.+...++..+..++.+. +.....+.. ..+++.++
T Consensus 321 ~~l~~~~~~~~~~~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll 398 (963)
T 2x19_B 321 RALLDQVEHWQSFL--ALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLL 398 (963)
T ss_dssp HHHHHCGGGHHHHH--HHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCccchHHHH--HHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 1 011111 355666665554 35556667776666665411 111111110 01233334
Q ss_pred HHhccchh--------------hHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhc----cCCChhHHHHHHHHHHH
Q 015687 206 AQFNEHAK--------------LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI----HSNDDEVLTDACWALSY 267 (402)
Q Consensus 206 ~~l~~~~~--------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL----~~~~~~v~~~a~~~l~~ 267 (402)
..+....+ .+.+..+..+|..++...+ ......+++.+...+ .+.+...++.++++++.
T Consensus 399 ~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~ 475 (963)
T 2x19_B 399 HKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG---AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQS 475 (963)
T ss_dssp HHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHH
T ss_pred HHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 43421111 1234555666666664322 122233444444555 45677889999999999
Q ss_pred hccCChHHHHHHHHhCcHHHHHHhc---CCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHH
Q 015687 268 LSDGTNDKIQAVIEAGVCPRLVELL---RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 344 (402)
Q Consensus 268 l~~~~~~~~~~~~~~~~i~~L~~~L---~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~ 344 (402)
++.+..+.. ...++.++..+ ..+++.++..+++++|.++..-.... ..+ ..+++.++..|.+ +.|+.
T Consensus 476 i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~l~~~l~~---~~V~~ 545 (963)
T 2x19_B 476 IAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPLVLHALGN---PELSV 545 (963)
T ss_dssp HTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHHHHHHTTC---GGGHH
T ss_pred HHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHHHHHHhCC---chHHH
Confidence 987644211 12233333332 34578899999999999986322111 223 3788889888853 78999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHhhcC
Q 015687 345 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 345 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~~ 398 (402)
.|++++.+++...++.+...++ +++..|..++.. -+.+.+..+..+++.++..
T Consensus 546 ~A~~al~~l~~~~~~~l~p~~~-~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~ 600 (963)
T 2x19_B 546 SSVSTLKKICRECKYDLPPYAA-NIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSA 600 (963)
T ss_dssp HHHHHHHHHHHHTGGGCTTTHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHhccCCCChHHHHHHHHHHHHHHhc
Confidence 9999999999644333322222 255566666665 3568888889999888753
No 96
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.90 E-value=0.00026 Score=65.83 Aligned_cols=230 Identities=13% Similarity=0.078 Sum_probs=118.2
Q ss_pred hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCc
Q 015687 69 KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 148 (402)
Q Consensus 69 ~~~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 148 (402)
..+-...|+..|-++..+.+.-|+..||.++..... .. |-. ...+ . .-|+++++-++-+ .
T Consensus 172 PfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~-GA------GR~-------~~~N-~---DLAvRLLCVLALD--R 231 (800)
T 3oc3_A 172 VLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDN-GG------DIQ-------IRVD-S---KLFSKIYEILVTD--K 231 (800)
T ss_dssp GGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------CC-------CCCC-T---THHHHHHHHHHHB--C
T ss_pred HHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhcc-CC------cee-------cccc-H---HHHHHHHHHHHhc--c
Confidence 344567888889999999999999999999865411 00 100 1111 1 3444555544442 1
Q ss_pred chHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhh
Q 015687 149 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (402)
Q Consensus 149 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~ 228 (402)
+.+.+-+ . --..||+.|+.+||.+ ..-+.- ..++..++..+ ....-+++..++-.|.++
T Consensus 232 FGDYVSD-q-----------VVAPVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL- 290 (800)
T 3oc3_A 232 FNDFVDD-R-----------TVAPVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYL- 290 (800)
T ss_dssp CBBCSSS-S-----------CBCHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHT-
T ss_pred ccccccC-e-----------eeeehHHHHHHHHHHH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHH-
Confidence 1111111 1 1123666666666666 443321 22333333322 334456666666666666
Q ss_pred hCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC--hhhHHHHHHH
Q 015687 229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS--PSVLIPALRT 306 (402)
Q Consensus 229 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~--~~v~~~a~~~ 306 (402)
.+--. . ..++++.++..|.+.|++|+..|+.+|.-++ .. +.+.. ++..+...|.+-+ ..-....+..
T Consensus 291 ~DLL~-~---Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~p-~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdL 359 (800)
T 3oc3_A 291 KEFVE-D---KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-IT-DSLDL-----VLEKCWKNIESEELISVSKTSNLSL 359 (800)
T ss_dssp GGGCC-C---HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-CS-STHHH-----HHHHHHHHHHTCCSCCTTHHHHHHH
T ss_pred HHHHH-H---HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-ch-hhHHH-----HHHHHHHHhhhhcccchhhHHHHHH
Confidence 11110 0 4556666666666667777777777766666 21 12221 2333444443221 1223344555
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 015687 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354 (402)
Q Consensus 307 l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 354 (402)
|+.++..+.. .-.+...+|.|..++.++ -+.||..+..+|..+.
T Consensus 360 LAkL~s~p~~---a~~dp~LVPRL~PFLRHt-ITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 360 LTKIYRENPE---LSIPPERLKDIFPCFTSP-VPEVRTSILNMVKNLS 403 (800)
T ss_dssp HHHHHHHCTT---CCCCSGGGGGTGGGGTCS-SHHHHHHHHHHTTTCC
T ss_pred HHHHHcCCcc---cccChHHHHHHHhhhcCC-cHHHHHHHHHHHHHHH
Confidence 5555554321 011235666777777776 6677777766666555
No 97
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.86 E-value=0.0028 Score=65.46 Aligned_cols=154 Identities=14% Similarity=0.143 Sum_probs=95.2
Q ss_pred hHHHHHHhccC--CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-----CChhhHHHHHHHHHHhhcCC
Q 015687 242 ALPALERLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-----PSPSVLIPALRTVGNIVTGD 314 (402)
Q Consensus 242 ~l~~L~~lL~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~-----~~~~v~~~a~~~l~nl~~~~ 314 (402)
.++.+...+.+ .+...++.++|+++.++.+..+....-.-..+++.|+.++.+ +...++..+++++|..+..-
T Consensus 452 ~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl 531 (1023)
T 4hat_C 452 MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFL 531 (1023)
T ss_dssp HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHH
Confidence 34444444443 478899999999999998765432222223466777777753 23346667889999987632
Q ss_pred hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHH--------HHHHcCCHHHHHHHhccCCHHHHH
Q 015687 315 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ--------AIIEAGIIGPLVNLLLNAEFEIKK 386 (402)
Q Consensus 315 ~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~--------~l~~~~~i~~L~~ll~~~~~~v~~ 386 (402)
..... .+. .++..|...+..+ .+.++..|||++.+||..+..... ..++ .++..+...+..-+.+-+.
T Consensus 532 ~~~~~-~L~-~vl~~L~~~l~~~-~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~-~il~~l~~~~~~l~~~~~~ 607 (1023)
T 4hat_C 532 KAHWN-FLR-TVILKLFEFMHET-HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQ-TIIRDIQKTTADLQPQQVH 607 (1023)
T ss_dssp HHCHH-HHH-HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHH-HHHHTHHHHHTTSCHHHHH
T ss_pred hccHH-HHH-HHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHH-HHHHHHHHHHHhCCHHHHH
Confidence 21111 111 3445566666666 788999999999999974333221 0111 1334444444556677778
Q ss_pred HHHHHHHHhhcCC
Q 015687 387 EAAWAISNATSGG 399 (402)
Q Consensus 387 ~a~~aL~nl~~~~ 399 (402)
.+..+++.++...
T Consensus 608 ~lyeai~~vi~~~ 620 (1023)
T 4hat_C 608 TFYKACGIIISEE 620 (1023)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC
Confidence 8888888887653
No 98
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.84 E-value=0.00062 Score=59.41 Aligned_cols=192 Identities=12% Similarity=0.110 Sum_probs=128.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCch-hH-Hh-hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCC
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPI-NE-VI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 147 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~-~~-~~-~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~ 147 (402)
..+| +-+.|.+.+...+..|+..+.+++........ +. +. -....+.+...+.+.+ ..++..++.++..++....
T Consensus 10 sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~ 87 (278)
T 4ffb_C 10 TTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFA 87 (278)
T ss_dssp -CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC
T ss_pred hcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhh
Confidence 3456 66889999999999999999998865321111 11 11 1234566777888877 8999999999998875321
Q ss_pred c--c-hH--HHHhCCchHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHH
Q 015687 148 E--N-TR--VVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT 221 (402)
Q Consensus 148 ~--~-~~--~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~ 221 (402)
. . .. ...-..++|.|+. .+.+....+++.+..++..++...... .. +++.++..+ .+.++.++..++
T Consensus 88 ~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l 160 (278)
T 4ffb_C 88 SSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAA 160 (278)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHH
T ss_pred hhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHH
Confidence 1 1 11 1112246777775 578889999999999888776432211 11 234455555 677888888888
Q ss_pred HHHHHhhhCC--C-CCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccC
Q 015687 222 WTLSNFCRGK--P-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG 271 (402)
Q Consensus 222 ~~L~~l~~~~--~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~ 271 (402)
..|..+.... . ......+..+++.+..+|.+.|++||..|..++..+-..
T Consensus 161 ~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 161 NCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 8888877653 1 122334466778888999999999999999998877543
No 99
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.77 E-value=0.0018 Score=67.68 Aligned_cols=234 Identities=12% Similarity=0.134 Sum_probs=129.5
Q ss_pred CchHHHHHhhCCCCHHHHHHHHHHHHHhhCC---CchhhHHHHh--cCChHHHHHHhccch------------------h
Q 015687 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGD---SPKCRDLVLS--NGALMPLLAQFNEHA------------------K 213 (402)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~---~~~~~~~~~~--~g~i~~L~~~l~~~~------------------~ 213 (402)
.+++.++.....++.++...++..+..++.+ .+..+..... ...++.++..+.... +
T Consensus 344 ~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d 423 (1049)
T 3m1i_C 344 NAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKE 423 (1049)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhcc
Confidence 4577777777778889999999888887651 1111111111 012333343331110 0
Q ss_pred ---hHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhcc--CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 015687 214 ---LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 288 (402)
Q Consensus 214 ---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L 288 (402)
......+..+|..++...+ ......+.+.+...+. ..+...++.++++++.++.........-.-..+++.+
T Consensus 424 ~d~~~~~~~~~~~L~~l~~~~~---~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l 500 (1049)
T 3m1i_C 424 SDTIQLYKSEREVLVYLTHLNV---IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDL 500 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCH---HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHH
Confidence 0234456667777764422 1222334455555554 3467789999999999986543321111112344555
Q ss_pred HHhcCC-----CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHH-
Q 015687 289 VELLRH-----PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ- 362 (402)
Q Consensus 289 ~~~L~~-----~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~- 362 (402)
..+... +.+.++..+++++|.++..-....+ .+. .+++.++..+.++ ++.|+..||+++.+++...+....
T Consensus 501 ~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~-~l~-~vl~~ll~~l~~~-~~~V~~~A~~al~~l~~~~~~~l~~ 577 (1049)
T 3m1i_C 501 LDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-FLR-TVILKLFEFMHET-HEGVQDMACDTFIKIVQKCKYHFVI 577 (1049)
T ss_dssp HHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH-HHH-HHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHHTHHHHS
T ss_pred HHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHH-HHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 554332 2234455688999988753221111 222 4567788888877 899999999999999974333221
Q ss_pred -------HHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 363 -------AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 363 -------~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
..++ .++..+..++..-+.+-......+++.++.
T Consensus 578 ~~~~~~~p~~~-~il~~l~~~~~~~~~~~~~~~~eai~~ii~ 618 (1049)
T 3m1i_C 578 QQPRESEPFIQ-TIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1049)
T ss_dssp CCTTCSSCHHH-HHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCcHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 1122 144445555555455555566666666654
No 100
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.70 E-value=0.006 Score=53.32 Aligned_cols=240 Identities=14% Similarity=0.157 Sum_probs=163.1
Q ss_pred HHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhh----HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhh
Q 015687 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR----DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~----~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~ 228 (402)
+...+.+..|+..|..-+-+.|..+..++.++.....+.+ +.+.. -.+.+..++....++++.-.+-..|..++
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLReci 151 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRECI 151 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHHH
Confidence 4445788899999988899999999999999886654322 23332 33444444433456677777777777777
Q ss_pred hCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhcCCCChhhHHHHHH
Q 015687 229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRHPSPSVLIPALR 305 (402)
Q Consensus 229 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~~L~~~~~~v~~~a~~ 305 (402)
++..........+.+-.+.+.++.++-++..+|..++..+..........++.. .++.....+|.+++.-.+..++.
T Consensus 152 r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 152 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 764333333335566677788889999999999999988876555555555554 35677888899999999999999
Q ss_pred HHHHhhcCCh--HH-HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHH-HH--cCCHHHHHHHh
Q 015687 306 TVGNIVTGDD--MQ-TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAI-IE--AGIIGPLVNLL 377 (402)
Q Consensus 306 ~l~nl~~~~~--~~-~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l-~~--~~~i~~L~~ll 377 (402)
.||.+..... .. ..++-+..-+..++.+|.+. +..++-+|..++--+.+ ..+..+..+ +. ..++..|-++.
T Consensus 232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~ 310 (341)
T 1upk_A 232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQ 310 (341)
T ss_dssp HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTT
T ss_pred HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCC
Confidence 9999987533 22 22233445688999999999 99999999999987776 234444444 43 33455555555
Q ss_pred ccC--CHHHHHHHHHHHHHh
Q 015687 378 LNA--EFEIKKEAAWAISNA 395 (402)
Q Consensus 378 ~~~--~~~v~~~a~~aL~nl 395 (402)
.+. |.....+=...+..|
T Consensus 311 ~d~~eDeqF~dEK~~lI~~I 330 (341)
T 1upk_A 311 NDRTEDEQFNDEKTYLVKQI 330 (341)
T ss_dssp TTC-CCSHHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHH
Confidence 443 445555544444444
No 101
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.69 E-value=0.0011 Score=68.51 Aligned_cols=220 Identities=9% Similarity=0.087 Sum_probs=133.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc--chhhHHHHHHHHHHHHhhhCCCCCchhhhhchHH
Q 015687 167 SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 244 (402)
Q Consensus 167 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~ 244 (402)
.+.+...++.++++++.++....... ...++.++..+.. .+++.++..++|++..++..-.. .......+++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~-~~~~l~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLAD-HPVMINSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHH-CHHHHTTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHH
Confidence 55688899999999999997644311 1234455554422 24677999999999999875311 1256678899
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CChhhHHHHHHHHHHhhcCCh-HHHHHH
Q 015687 245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDD-MQTQCI 321 (402)
Q Consensus 245 ~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~--~~~~v~~~a~~~l~nl~~~~~-~~~~~i 321 (402)
.++..|.+ +.++..|++++.+++..........+ ..+++.+..++.. -+...+..++.+++.++...+ +.....
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~ 609 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN 609 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99988854 88999999999999854332111011 1344455555554 246788889999999986543 333333
Q ss_pred HhCCChHHHHHHh----cCCCchhHHHH---HHHHHHHHhc--CC--H------------------HHHHHHHHcCCHHH
Q 015687 322 INHQALPCLLDLL----TQNYKKSIKKE---ACWTISNITA--GN--V------------------NQIQAIIEAGIIGP 372 (402)
Q Consensus 322 ~~~~~l~~L~~ll----~~~~~~~v~~~---a~~~L~nl~~--~~--~------------------~~~~~l~~~~~i~~ 372 (402)
++ .+++.+...+ +...++..+.. ..-+|+.+.. +. + +....+.+ .+++.
T Consensus 610 ~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 687 (963)
T 2x19_B 610 LH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQ-QVFQL 687 (963)
T ss_dssp HH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHH-HHHHH
T ss_pred HH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHH-HHHHH
Confidence 32 3444444443 22224444443 3334444442 10 0 11222332 36677
Q ss_pred HHHHhcc--CCHHHHHHHHHHHHHhhc
Q 015687 373 LVNLLLN--AEFEIKKEAAWAISNATS 397 (402)
Q Consensus 373 L~~ll~~--~~~~v~~~a~~aL~nl~~ 397 (402)
+..++.. .++.+.+.++.++..++.
T Consensus 688 ~~~~l~~~~~~~~v~e~~~~~l~~~~~ 714 (963)
T 2x19_B 688 IQKVLSKWLNDAQVVEAVCAIFEKSVK 714 (963)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 7777653 567899999999888653
No 102
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.50 E-value=0.0018 Score=55.28 Aligned_cols=185 Identities=15% Similarity=0.059 Sum_probs=119.0
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhc---cchhhHHHHHHHHHHHHhh----hCCCCC
Q 015687 162 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFC----RGKPQP 234 (402)
Q Consensus 162 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~---~~~~~~~~~~a~~~L~~l~----~~~~~~ 234 (402)
+...|.+.+..-+..++..|.......+ +.+.. .++.++..+. .+++..+...++.+|..+. ......
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~---~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~ 125 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSP---RSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM 125 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCH---HHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhCh---HHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3444455566666666666665543332 22222 3333333221 2456777777777766653 322222
Q ss_pred chhhhhchHHHHHHhccCCChhHHHHHHHHHHHhcc-CChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 015687 235 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD-GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 313 (402)
Q Consensus 235 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~ 313 (402)
.......++|.|+.-+.++.+.++..+-.++..+.. .++. .+++.+.+.+.+.++..+..++..++.+...
T Consensus 126 ~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 126 SQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp CHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 233346788999999998888898888777766553 1221 2467788888999999999999999999752
Q ss_pred ChHHHHHHHhCCCh---HHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 015687 314 DDMQTQCIINHQAL---PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 365 (402)
Q Consensus 314 ~~~~~~~i~~~~~l---~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 365 (402)
.... ..+.+ |.+.+++.++ +..||..|..++..+..+-.+.+...+
T Consensus 198 ~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~~~Gd~v~k~l 246 (266)
T 2of3_A 198 AGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFKFEGDQMWKAA 246 (266)
T ss_dssp HCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred cCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 2111 23568 9999999998 999999999999977763233344433
No 103
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.0018 Score=56.49 Aligned_cols=184 Identities=13% Similarity=0.125 Sum_probs=123.3
Q ss_pred HHHHhccchhhHHHHHHHHHHHHhhhCCCCCc-----hhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCCh-----
Q 015687 204 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL-----FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN----- 273 (402)
Q Consensus 204 L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~----- 273 (402)
+-..| .+.+-..+..++..+..+....+... ........+.+...+.+.+..+...++.++..++....
T Consensus 14 l~e~l-~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERL-TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHT-TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhc-ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 45566 67788889999988888776642211 11234556777788889999999999999988764321
Q ss_pred HHHHHHHHhCcHHHHHHh-cCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHH
Q 015687 274 DKIQAVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352 (402)
Q Consensus 274 ~~~~~~~~~~~i~~L~~~-L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~n 352 (402)
.......-..+++.|+.- +.+....++..++.++..++...... . .+++.+...+.+. +|.++.+++..|..
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~-----~~~e~l~~~l~~K-npkv~~~~l~~l~~ 165 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-T-----QSVELVIPFFEKK-LPKLIAAAANCVYE 165 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-H-----HHHHHHGGGGGCS-CHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-H-----HHHHHHHHHHhcc-CHHHHHHHHHHHHH
Confidence 111112223467777764 78888899999988887776532210 1 1235666778888 99999999988887
Q ss_pred Hhc--CCHH-HHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 015687 353 ITA--GNVN-QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 353 l~~--~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 396 (402)
+.. |... .....+. .+++.+..++.+.++.||.+|..++..+-
T Consensus 166 ~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp HHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 764 2111 1122222 25667888899999999999999987764
No 104
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.42 E-value=0.0089 Score=51.07 Aligned_cols=177 Identities=10% Similarity=0.098 Sum_probs=122.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhh----cCCCCHHHHHHHHHHHHHhhc----C
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFL----SRDDFPQLQFEAAWALTNIAS----G 145 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL----~~~~~~~~~~~a~~~L~~l~~----~ 145 (402)
+.+...+.+.|......|+..|...++.. + +.++. .+..+++.+ .+++ ..+...++..|..+.. .
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~---~-~~~~~--~lDll~kw~~lr~~d~N-~~v~~~~L~~L~~l~~~l~~~ 121 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTS---P-RSLLS--NSDLLLKWCTLRFFETN-PAALIKVLELCKVIVELIRDT 121 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHC---H-HHHHH--THHHHHHHHHHHTTSCC-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhC---h-HHHHH--HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhc
Confidence 57777888899999999999999987642 1 22221 123333322 3555 7888888888877642 2
Q ss_pred CCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHH
Q 015687 146 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS 225 (402)
Q Consensus 146 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~ 225 (402)
.......-. .-.+|.|+.=+.++...+|+.+-.++..++.-.+. ..+++.+++-+ .+.+...+..++..+.
T Consensus 122 ~y~~~~~ea-~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~-ksKN~R~R~e~l~~l~ 192 (266)
T 2of3_A 122 ETPMSQEEV-SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDAL-KSKNARQRSECLLVIE 192 (266)
T ss_dssp TCCCCHHHH-HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGG-GCSCHHHHHHHHHHHH
T ss_pred cccchHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHH-ccCCHHHHHHHHHHHH
Confidence 122222111 23689999999999999999988888777542221 12466677777 7778888999988888
Q ss_pred HhhhCCCCCchhhhhchH---HHHHHhccCCChhHHHHHHHHHHHhcc
Q 015687 226 NFCRGKPQPLFEQTRPAL---PALERLIHSNDDEVLTDACWALSYLSD 270 (402)
Q Consensus 226 ~l~~~~~~~~~~~~~~~l---~~L~~lL~~~~~~v~~~a~~~l~~l~~ 270 (402)
.+....... ....+ |.+..++.+.|..|+..|+.++..+-.
T Consensus 193 ~li~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 193 YYITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 887664222 13467 999999999999999999999986643
No 105
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.36 E-value=0.008 Score=52.54 Aligned_cols=201 Identities=12% Similarity=0.111 Sum_probs=147.9
Q ss_pred HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhh---h---hchHHHHHHhccCCChhHHHHHHHHHH
Q 015687 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ---T---RPALPALERLIHSNDDEVLTDACWALS 266 (402)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~---~---~~~l~~L~~lL~~~~~~v~~~a~~~l~ 266 (402)
..+...+.+..|+..| ..-+-+.++.++.++.++.+......... + ..++..|+..- +++++.-.+-..|.
T Consensus 72 ~ei~~~dll~~Li~~l-~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLR 148 (341)
T 1upk_A 72 QELYNSGLLSTLVADL-QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLR 148 (341)
T ss_dssp HHHHHHSHHHHHHHTG-GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhc-ccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHH
Confidence 3445567788888888 77788899999999999998874333222 2 23344444433 34555455555555
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhC---CChHHHHHHhcCCCchhHH
Q 015687 267 YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH---QALPCLLDLLTQNYKKSIK 343 (402)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~---~~l~~L~~ll~~~~~~~v~ 343 (402)
.++. .+.....++..+.+-.+.+++..++-++...|..++..+.+.........+.. .++.....+|.++ +.-+|
T Consensus 149 ecir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTk 226 (341)
T 1upk_A 149 ECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTK 226 (341)
T ss_dssp HHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHH
T ss_pred HHHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhH
Confidence 5554 44456678888888999999999999999999999999988766555556543 3577788899998 99999
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHH-cCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 344 KEACWTISNITAG--NVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 344 ~~a~~~L~nl~~~--~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
+.+...|+.|... +.......+. ..-+..++.+|.+....+|.+|..+.--++..
T Consensus 227 RQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 227 RQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 9999999999864 5555555553 45688999999999999999999887665543
No 106
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.22 E-value=0.0003 Score=59.68 Aligned_cols=46 Identities=22% Similarity=0.210 Sum_probs=30.4
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHH
Q 015687 328 PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 393 (402)
Q Consensus 328 ~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 393 (402)
+.|..++.++ +..||..++..++ .+.|..+ .++++.|+..|...|+
T Consensus 197 ~~L~~Ll~D~-d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 197 DDLLELLHDP-DWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GGGGGGGGCS-SHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHHHHHHcCC-CHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 4566666666 7777777766542 2445555 8888999998876543
No 107
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.13 E-value=0.018 Score=47.78 Aligned_cols=144 Identities=17% Similarity=0.080 Sum_probs=107.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHH-hhCCCCHHHHHHHHHHHHHhhC-CCchhhH
Q 015687 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAG-DSPKCRD 193 (402)
Q Consensus 116 i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~-~~~~~~~ 193 (402)
++....+.+++. .++|..|+..|+.. . +. ..+++.+.. +-.+++-.|++.+..+++.++. ..++.
T Consensus 73 ~~la~~L~~~~~-deVR~~Av~lLg~~-~--~~-------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-- 139 (240)
T 3l9t_A 73 KKLAFLAYQSDV-YQVRMYAVFLFGYL-S--KD-------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-- 139 (240)
T ss_dssp HHHHHHHHTCSS-HHHHHHHHHHHHHT-T--TS-------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred HHHHHHHHhCcc-hHHHHHHHHHHHhc-c--Cc-------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence 555666677776 79999999998887 3 11 135677776 5667889999999999999985 44431
Q ss_pred HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCCh
Q 015687 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 273 (402)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~ 273 (402)
.++.+.... .+++..+++.++..+.-.+.. + ........++|.+..+..+++..|+..+.|.|..++...+
T Consensus 140 ------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 140 ------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp ------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred ------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 455566666 888999999999887665543 2 1223335678888888888999999999999999999888
Q ss_pred HHHHHHHH
Q 015687 274 DKIQAVIE 281 (402)
Q Consensus 274 ~~~~~~~~ 281 (402)
+.+..+++
T Consensus 211 d~V~~~~~ 218 (240)
T 3l9t_A 211 DLVKIELK 218 (240)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77665554
No 108
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.11 E-value=0.01 Score=61.12 Aligned_cols=236 Identities=15% Similarity=0.098 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHH-HhC----CchHHHHHhhC-----CCCHHHHHHHHHHHHHhhCCCchhhHHHHhc
Q 015687 129 PQLQFEAAWALTNIASGTSENTRVV-IDH----GAVPIFVRLLS-----SPTDDVREQAVWALGNVAGDSPKCRDLVLSN 198 (402)
Q Consensus 129 ~~~~~~a~~~L~~l~~~~~~~~~~~-~~~----g~i~~L~~lL~-----~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~ 198 (402)
....+.++.+|+.++++-......+ -.. .+++.+..+++ .+.+.++..++++++..+..-.. ..
T Consensus 457 W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------~~ 530 (980)
T 3ibv_A 457 WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------ES 530 (980)
T ss_dssp HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------CC
T ss_pred HHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------Cc
Confidence 4668889999999988644322211 011 13455555554 57899999999999998754321 22
Q ss_pred CChHHHHHHhcc-----chhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccC-----CCh-------------
Q 015687 199 GALMPLLAQFNE-----HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-----NDD------------- 255 (402)
Q Consensus 199 g~i~~L~~~l~~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~-----~~~------------- 255 (402)
..+++++..+.. +++..++..|+.++.++|+.....-......++..+..+|.. .+.
T Consensus 531 ~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~ 610 (980)
T 3ibv_A 531 AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRN 610 (980)
T ss_dssp TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHT
T ss_pred hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhccc
Confidence 456777776644 456789999999999999886433333444555555555542 111
Q ss_pred ---hHHHHHHHHHHHhc---cCChHHHHHHHHhCcHHHHHH----hcCCC----Chhh-HHHHHHHHHHhhcCChHH---
Q 015687 256 ---EVLTDACWALSYLS---DGTNDKIQAVIEAGVCPRLVE----LLRHP----SPSV-LIPALRTVGNIVTGDDMQ--- 317 (402)
Q Consensus 256 ---~v~~~a~~~l~~l~---~~~~~~~~~~~~~~~i~~L~~----~L~~~----~~~v-~~~a~~~l~nl~~~~~~~--- 317 (402)
+-+.....+++.+. ..+.+.....++ .++++++. .+... +... ....+.++|.++.+-+..
T Consensus 611 ~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~-~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~ 689 (980)
T 3ibv_A 611 SDFNSQLYLFETVGVLISSGNLTPEEQALYCD-SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSE 689 (980)
T ss_dssp TTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH-HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-C
T ss_pred CCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCC
Confidence 12333445555554 223333332332 23344333 33221 1111 224567778888653211
Q ss_pred ---HHHHHhCCChHHHHHHhc--CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhc
Q 015687 318 ---TQCIINHQALPCLLDLLT--QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 378 (402)
Q Consensus 318 ---~~~i~~~~~l~~L~~ll~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 378 (402)
...++. .+.+.+...+. .. +..|+..++.++..+...-...+.. .+|.++..+-
T Consensus 690 ~~p~~~~f~-~~~~~il~~l~~~~~-~~~irea~~~~~~r~i~~lg~~~~p-----~lp~~i~~ll 748 (980)
T 3ibv_A 690 EVAWLASFN-KASDEIFLILDRMGF-NEDIRGAVRFTSGRIINVVGPDMLP-----KVPQLISILL 748 (980)
T ss_dssp CCSHHHHHH-HHHHHHHHHHHHSCC-SHHHHHHHHHHHHHHTTTTHHHHTT-----THHHHHHHHH
T ss_pred CCcHHHHHH-HHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHhHHH-----HHHHHHHHHH
Confidence 111222 34555655564 33 6789999999999998754443332 4555555443
No 109
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.04 E-value=0.00055 Score=58.09 Aligned_cols=67 Identities=21% Similarity=0.250 Sum_probs=44.0
Q ss_pred HHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCC
Q 015687 246 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ 325 (402)
Q Consensus 246 L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~ 325 (402)
+..++.++++.|+..+...+ ..+.|..++.++++.|+..+...++
T Consensus 175 l~~ll~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D~d~~VR~~aa~~l~----------------- 219 (244)
T 1lrv_A 175 LGLMTQDPEPEVRRIVASRL------------------RGDDLLELLHDPDWTVRLAAVEHAS----------------- 219 (244)
T ss_dssp GGGSTTCSSHHHHHHHHHHC------------------CGGGGGGGGGCSSHHHHHHHHHHSC-----------------
T ss_pred HHHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCCCHHHHHHHHHcCC-----------------
Confidence 33455666666766665432 2356777778888888888877754
Q ss_pred ChHHHHHHhcCCCchhHHHHHHHHH
Q 015687 326 ALPCLLDLLTQNYKKSIKKEACWTI 350 (402)
Q Consensus 326 ~l~~L~~ll~~~~~~~v~~~a~~~L 350 (402)
.+.|..+ .++ ++.||..+...|
T Consensus 220 -~~~L~~L-~D~-~~~VR~aa~~~L 241 (244)
T 1lrv_A 220 -LEALREL-DEP-DPEVRLAIAGRL 241 (244)
T ss_dssp -HHHHHHC-CCC-CHHHHHHHHCCC
T ss_pred -HHHHHHc-cCC-CHHHHHHHHHHh
Confidence 2445555 666 889998886544
No 110
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.78 E-value=0.0029 Score=59.02 Aligned_cols=188 Identities=17% Similarity=0.131 Sum_probs=122.5
Q ss_pred CHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHH
Q 015687 128 FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ 207 (402)
Q Consensus 128 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~ 207 (402)
-..+|+.|+.+|+.+ ..-+.. ..++..++..+..+..+++..++-.|..+ .+-..+ -.++++.++.-
T Consensus 241 VAPVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~~---Ld~Vv~aVL~G 307 (800)
T 3oc3_A 241 VAPVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVED---KDGLCRKLVSL 307 (800)
T ss_dssp BCHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCCC---HHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHHH---HHHHHHHHHhh
Confidence 368999999999999 654443 34566666666788999999999999988 111111 12356667777
Q ss_pred hccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCC-C-hhHHHHHHHHHHHhccCChHHHHHHHHhCcH
Q 015687 208 FNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN-D-DEVLTDACWALSYLSDGTNDKIQAVIEAGVC 285 (402)
Q Consensus 208 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~-~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i 285 (402)
| .+.|.+++..|+.+|..++ .+ .....++..+-..|.+- | ..-....+..|+.|+..+... ......+
T Consensus 308 L-~D~DDDVRAVAAetLiPIA--~p----~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LV 377 (800)
T 3oc3_A 308 L-SSPDEDIKLLSAELLCHFP--IT----DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERL 377 (800)
T ss_dssp T-TCSSHHHHHHHHHHHTTSC--CS----STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGG
T ss_pred c-CCcccHHHHHHHHHhhhhc--ch----hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHH
Confidence 7 6778899999999999888 12 23455566666666442 2 122334455556655443211 1123789
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHH-HHhcCCCchhHHHHHHHHH
Q 015687 286 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL-DLLTQNYKKSIKKEACWTI 350 (402)
Q Consensus 286 ~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~-~ll~~~~~~~v~~~a~~~L 350 (402)
|+|.++|.|+-.+||..+++++..+. .. .++..+. .+|-.. +++++..+..+-
T Consensus 378 PRL~PFLRHtITSVR~AVL~TL~tfL--~~---------~~LRLIFQNILLE~-neeIl~lS~~VW 431 (800)
T 3oc3_A 378 KDIFPCFTSPVPEVRTSILNMVKNLS--EE---------SIDFLVAEVVLIEE-KDEIREMAIKLL 431 (800)
T ss_dssp GGTGGGGTCSSHHHHHHHHHHTTTCC--CH---------HHHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred HHHHhhhcCCcHHHHHHHHHHHHHHH--hh---------hHHHHHHHHHHhCC-cHHHHHHHHHHH
Confidence 99999999999999999999998887 11 2233333 344445 677776554433
No 111
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.68 E-value=0.3 Score=50.52 Aligned_cols=222 Identities=13% Similarity=0.080 Sum_probs=138.4
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCC---
Q 015687 70 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT--- 146 (402)
Q Consensus 70 ~~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~--- 146 (402)
+..+..++..+.+++.+.+..|-..|..+ .. .+ ++...+..+|..+.++.++..|+.+|.+.....
T Consensus 27 v~~Le~lv~~ly~p~~~~r~qA~~~L~q~-q~--sp--------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~ 95 (1073)
T 3gjx_A 27 INLLDNVVNCLYHGEGAQQRMAQEVLTHL-KE--HP--------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKI 95 (1073)
T ss_dssp HHHHHHHHHTTTCSSHHHHHHHHHHHHTS-SC--CS--------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH-Hc--Cc--------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 34678899998888888888888877765 22 22 224445556655545899999999999876521
Q ss_pred -CcchHHHHhCCchHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCC-chhhHHHHhcCChHHHHHHhccchhhHHHHH
Q 015687 147 -SENTRVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRN 219 (402)
Q Consensus 147 -~~~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~ 219 (402)
+......+...++..+...-.+ .++.++.+.+.++..++... |.. -.+.++.++..+. .++.....
T Consensus 96 L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-----Wp~fi~dLv~~~~--~~~~~~~~ 168 (1073)
T 3gjx_A 96 LPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-----WPTFISDIVGASR--TSESLCQN 168 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHH--HCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-----ccHHHHHHHHHhC--CCHHHHHH
Confidence 2222333333556666655433 35677788888888887432 110 1235666666662 23344566
Q ss_pred HHHHHHHhhhCCCCC------c------hhhh----hchHHHHHHhcc-CCChhHHHHHHHHHHHhccCChHHHHHHHHh
Q 015687 220 ATWTLSNFCRGKPQP------L------FEQT----RPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEA 282 (402)
Q Consensus 220 a~~~L~~l~~~~~~~------~------~~~~----~~~l~~L~~lL~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 282 (402)
.+.+|..|++.-... . ...+ ..+++.+..+|. ..++++...++.++..+...-+ +..+++.
T Consensus 169 ~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~ 246 (1073)
T 3gjx_A 169 NMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFET 246 (1073)
T ss_dssp HHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSS
T ss_pred HHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccc
Confidence 777777776652110 0 0011 233344444443 3577888889999998887765 3567788
Q ss_pred CcHHHH-HHhcCCCChhhHHHHHHHHHHhhcC
Q 015687 283 GVCPRL-VELLRHPSPSVLIPALRTVGNIVTG 313 (402)
Q Consensus 283 ~~i~~L-~~~L~~~~~~v~~~a~~~l~nl~~~ 313 (402)
++++.+ ..+| .++.++..|+.||..++..
T Consensus 247 ~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 247 KLISTLIYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp SHHHHHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 888888 4666 4667999999999999874
No 112
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.64 E-value=0.038 Score=46.20 Aligned_cols=143 Identities=13% Similarity=0.125 Sum_probs=102.8
Q ss_pred ChhHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHh-------cCCCC-----hhhHHHHHHHHHHhhcCChHHHHH
Q 015687 254 DDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVEL-------LRHPS-----PSVLIPALRTVGNIVTGDDMQTQC 320 (402)
Q Consensus 254 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~~-------L~~~~-----~~v~~~a~~~l~nl~~~~~~~~~~ 320 (402)
+++-++.|+..|+.=-+.-++....+..+ |.+..|++= ++.+. ..-...|+..+..++++ ++.+..
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAsh-petr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH-PETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHC-TTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcC-cchhhH
Confidence 45567777777766555444554455554 555554332 22222 12234566667777764 557777
Q ss_pred HHhCCChHHHHHHhcCCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 321 IINHQALPCLLDLLTQNY----KKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 321 i~~~~~l~~L~~ll~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
++++++.-.|..+|+... .+.+|-.+..+++.+.. ++++.+..+++.+++|..++.++.++.-.+.-|...+..+
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 999998888888886552 24788899999999997 7899999999999999999999999999999999988877
Q ss_pred hc
Q 015687 396 TS 397 (402)
Q Consensus 396 ~~ 397 (402)
..
T Consensus 173 L~ 174 (268)
T 2fv2_A 173 LL 174 (268)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 113
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=96.58 E-value=0.74 Score=48.64 Aligned_cols=300 Identities=10% Similarity=0.058 Sum_probs=170.0
Q ss_pred cHHHHHHhhcCC--CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhc-CCCCHHHHHHHHHHHHHhhcC---
Q 015687 72 SLPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS-RDDFPQLQFEAAWALTNIASG--- 145 (402)
Q Consensus 72 ~i~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~~~~~~a~~~L~~l~~~--- 145 (402)
.+..+++.+.++ +.+.+..|-..|..+-.. ++ ....+...|. .+.++.++..|+..|.+....
T Consensus 12 ~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~ 80 (1204)
T 3a6p_A 12 QLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--CP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN 80 (1204)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--CT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--ch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc
Confidence 355566555554 667788888888776321 11 2334444333 333389999999999987642
Q ss_pred -CCcchHHHHhCCchHHHHHhhC---CCCHHHHHHHHHHHHHhhCCC-chhhHHHHhcCChHHHHHHhccchhhHHHHHH
Q 015687 146 -TSENTRVVIDHGAVPIFVRLLS---SPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNA 220 (402)
Q Consensus 146 -~~~~~~~~~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a 220 (402)
-++.....++..++..+...-. +....++.+.+.++..++... |.. -.+.++.++..+.. +......+
T Consensus 81 ~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~-----Wp~ll~~L~~~~~~--~~~~~e~~ 153 (1204)
T 3a6p_A 81 GMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH-----WPDMLIELDTLSKQ--GETQTELV 153 (1204)
T ss_dssp GSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHHHHHT--CHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHhcC--CHHHHHHH
Confidence 1222223333345555554322 146889999999999987442 211 13467777877733 34456777
Q ss_pred HHHHHHhhhCC-C--CCchhh-----------hhchHHHHHHhccC-------------------CChhHHHHHHHHHHH
Q 015687 221 TWTLSNFCRGK-P--QPLFEQ-----------TRPALPALERLIHS-------------------NDDEVLTDACWALSY 267 (402)
Q Consensus 221 ~~~L~~l~~~~-~--~~~~~~-----------~~~~l~~L~~lL~~-------------------~~~~v~~~a~~~l~~ 267 (402)
+.+|..+++.. . ...... ...+++.+..++.. .+..+...++.++.+
T Consensus 154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence 88888887642 1 110000 11344444444432 134567777888876
Q ss_pred hccCChHHHHHHHHhC--cHHHHHHhcCCCChhhHHHHHHHHHHhhcCC--hHHHHHHHhC---CChHHHHHHhc-----
Q 015687 268 LSDGTNDKIQAVIEAG--VCPRLVELLRHPSPSVLIPALRTVGNIVTGD--DMQTQCIINH---QALPCLLDLLT----- 335 (402)
Q Consensus 268 l~~~~~~~~~~~~~~~--~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~--~~~~~~i~~~---~~l~~L~~ll~----- 335 (402)
.....+- ..+.+.. +++.+..++. ++.++..|+.+|..++... +.....++.. ..+..++..+.
T Consensus 234 ~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~ 309 (1204)
T 3a6p_A 234 YIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGG 309 (1204)
T ss_dssp TTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCC
T ss_pred HHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence 6654332 2333433 6777776665 4678999999999999754 2222222221 11234444432
Q ss_pred --CCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-----------cCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 336 --QNYKKSIKKEACWTISNITAGNVNQIQAIIE-----------AGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 336 --~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-----------~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
+..+.++.+..+..+..++. ....+++ .++++.++.++.+++..+-..++.....+..
T Consensus 310 ~~~e~d~e~~k~l~~ll~~lg~----~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~ 380 (1204)
T 3a6p_A 310 GLVEKHYVFLKRLCQVLCALGN----QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFR 380 (1204)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHH----HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHS
T ss_pred CCccHHHHHHHHHHHHHHHHHH----HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHh
Confidence 11145677777777777762 1222222 1357888888888888888877765554443
No 114
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.54 E-value=0.039 Score=46.17 Aligned_cols=140 Identities=11% Similarity=0.177 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCC----CHHHHHHHHHHHHHhhc-CCCcchHHHHhCCchHHHH
Q 015687 89 LDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD----FPQLQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFV 163 (402)
Q Consensus 89 ~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~----~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~ 163 (402)
-.|+..|..+++ .++....+++.++.-.|..+|+..+ .+.++..++.+++.+.. ++++....+.+.+++|..+
T Consensus 74 cnaLaLlQcvAs--hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 74 CNALALLQCVAS--HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHH--CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHc--CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 445556666665 3577778999998888888887654 35788999999999886 3456677788899999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCCchhhHHH------Hh-cCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 164 RLLSSPTDDVREQAVWALGNVAGDSPKCRDLV------LS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 164 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~------~~-~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
+.++.++.-.+..|...+..+..++.+..-.+ .. ..++..++..+.+.+++.+.+++..+...|+.+
T Consensus 152 rime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 152 RIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred HHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 99999999999999999998876655432111 11 124455555555677889999999999999877
No 115
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.51 E-value=0.47 Score=43.64 Aligned_cols=245 Identities=12% Similarity=0.039 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHh
Q 015687 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF 208 (402)
Q Consensus 129 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l 208 (402)
+..+..|+..|......-|+..+. ++..++.+.++.+..||.+|+..|..+|.+ +.... +.+.|+++|
T Consensus 42 ~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~k-----iaDvL~QlL 109 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPR-----VADILTQLL 109 (507)
T ss_dssp HHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhh-----HHHHHHHHH
Confidence 788999999999988877776654 678899999999999999999999999988 23222 567788888
Q ss_pred ccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhc-cCChHHHHHHHHhCcHHH
Q 015687 209 NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS-DGTNDKIQAVIEAGVCPR 287 (402)
Q Consensus 209 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~-~~~~~~~~~~~~~~~i~~ 287 (402)
+..++.-...+-++|..+...+| .+.+..+...+..+++.+++.++..|..=. .-..+....-++.-++..
T Consensus 110 -qtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ 181 (507)
T 3u0r_A 110 -QTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTE 181 (507)
T ss_dssp -TCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHH
T ss_pred -hccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHH
Confidence 66676677777777777776643 344555555555568888988887775322 211111112223334566
Q ss_pred HHHhcCCCChhhHHHHHHHHHHhhcCC-hHHHHHHHhCCChHHHHHHh------cCCCchhHHHHHHHHHHH----Hhc-
Q 015687 288 LVELLRHPSPSVLIPALRTVGNIVTGD-DMQTQCIINHQALPCLLDLL------TQNYKKSIKKEACWTISN----ITA- 355 (402)
Q Consensus 288 L~~~L~~~~~~v~~~a~~~l~nl~~~~-~~~~~~i~~~~~l~~L~~ll------~~~~~~~v~~~a~~~L~n----l~~- 355 (402)
+...|.+-...--.-.+.+|+.+-... ....+.+ ++.+.... ... +++.......|+.. ++.
T Consensus 182 ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeL-----v~ii~eQa~L~~~f~~s-D~e~vdRlI~C~~~ALP~FS~~ 255 (507)
T 3u0r_A 182 SKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQL-----VELVAEQADLEQTFNPS-DPDCVDRLLQCTRQAVPLFSKN 255 (507)
T ss_dssp HHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHH-----HHHHHHHHTTTSCCCSS-CHHHHHHHHHHHHHHGGGCBTT
T ss_pred HHHHhccccHHHHHHHHHHHHhcccccCchHHHHH-----HHHHHHHHhccCCCCCc-CHHHHHHHHHHHHHHHHHhccC
Confidence 677775555444444555555543332 2222222 22333332 112 33333333333332 222
Q ss_pred -CCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHhhcCCC
Q 015687 356 -GNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 356 -~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~ 400 (402)
++......+++. ++|.+-.+-.. ...+.+..-+.++.-++....
T Consensus 256 v~StkFv~y~~~k-IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~ 301 (507)
T 3u0r_A 256 VHSTRFVTYFCEQ-VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG 301 (507)
T ss_dssp BCCHHHHHHHHHH-TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred CChHHHHHHHHHh-hccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence 345555556555 77755443332 223466677777777665543
No 116
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.35 E-value=0.088 Score=48.34 Aligned_cols=124 Identities=17% Similarity=0.131 Sum_probs=96.9
Q ss_pred CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHH
Q 015687 168 SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALE 247 (402)
Q Consensus 168 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~ 247 (402)
.++...+..|+..|.....+-|..++. ++..++.++ .+.|..++..|...|..+|.+ ..+..+..+|+
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHH
Confidence 357899999999999999998887665 577899999 888999999999999999976 34678899999
Q ss_pred HhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 015687 248 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (402)
Q Consensus 248 ~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~ 311 (402)
++|+++++.-...+=++|..+...++.. .+..+...+..+++.+|+.++..|..-.
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLSTKL 162 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred HHHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 9999999887777777777776555422 2333444443457888988888885544
No 117
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=96.17 E-value=0.16 Score=42.55 Aligned_cols=138 Identities=12% Similarity=0.141 Sum_probs=85.0
Q ss_pred HHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcC----C------CCHHHHHHHHHHHHHhhcCCCcchHHHHh-CCch
Q 015687 91 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----D------DFPQLQFEAAWALTNIASGTSENTRVVID-HGAV 159 (402)
Q Consensus 91 a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~----~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~i 159 (402)
-+..|+..+..+...-++.+ ..+++..|+++|.. . .+...+..++.||..+... ......+.+ .+.+
T Consensus 21 ~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~-~~G~~~vl~~~~~i 98 (233)
T 2f31_A 21 CLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGI 98 (233)
T ss_dssp HHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSS-HHHHHHHHTSSSHH
T ss_pred HHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCC-hHHHHHHHcCcHHH
Confidence 44455544443322224556 45667777777642 1 1257789999999999875 444444444 5789
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hh-hHHHH----------hcCChHHHHHHhccchhhHHHHHHHHHHHHh
Q 015687 160 PIFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLVL----------SNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (402)
Q Consensus 160 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~~~----------~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l 227 (402)
..+...|.++++.++..++..|..+|..+. .. ...++ +..-+.+++..+....+.+....++..+-.+
T Consensus 99 ~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~l 178 (233)
T 2f31_A 99 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 178 (233)
T ss_dssp HHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 999999999999999999999998886543 12 23322 2224555666664444555555555555555
Q ss_pred hhC
Q 015687 228 CRG 230 (402)
Q Consensus 228 ~~~ 230 (402)
...
T Consensus 179 i~~ 181 (233)
T 2f31_A 179 ITP 181 (233)
T ss_dssp HTT
T ss_pred HCC
Confidence 544
No 118
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.11 E-value=0.081 Score=43.85 Aligned_cols=141 Identities=11% Similarity=0.064 Sum_probs=99.6
Q ss_pred HHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHH-hccCCChhHHHHHHHHHHHhcc-CChHHHHHHH
Q 015687 203 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER-LIHSNDDEVLTDACWALSYLSD-GTNDKIQAVI 280 (402)
Q Consensus 203 ~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~ 280 (402)
.+...|-+++..+++..|+.+|..+ . .....++.+.. +-.+++-.|++.+..++..++. ..++.
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~----- 139 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK----- 139 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-----
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-----
Confidence 3444444666668888899887776 2 11456777777 4456678899999989988874 33321
Q ss_pred HhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh--HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH
Q 015687 281 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD--MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358 (402)
Q Consensus 281 ~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~--~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 358 (402)
.++.+.....+++..+|..|...+.-.+.... .... -++|.|-.+..++ +..||+..+|.|..++..+|
T Consensus 140 ---~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~-----~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 140 ---ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPN-----EAIRRIADLKEDV-SEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp ---THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHH-----HHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTCH
T ss_pred ---HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHH-----HHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhCH
Confidence 46778889999999999998887654332211 1111 2456666667777 88999999999999999999
Q ss_pred HHHHHHHH
Q 015687 359 NQIQAIIE 366 (402)
Q Consensus 359 ~~~~~l~~ 366 (402)
+-+..+++
T Consensus 211 d~V~~~~~ 218 (240)
T 3l9t_A 211 DLVKIELK 218 (240)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98777665
No 119
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=96.03 E-value=0.31 Score=44.22 Aligned_cols=157 Identities=11% Similarity=0.112 Sum_probs=102.7
Q ss_pred HHHHHhhcCCC-HHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcC----------CCCHHHHHHHHHHHHHh
Q 015687 74 PAMVAGVWSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----------DDFPQLQFEAAWALTNI 142 (402)
Q Consensus 74 ~~l~~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~----------~~~~~~~~~a~~~L~~l 142 (402)
..++..|.++. .......+..|+..+......=++.++ .+++..|+++|.. ..+...+..++.||..+
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 34566666543 233344567777666544233356676 5668888888752 11257889999999999
Q ss_pred hcCCCcchHHHHh-CCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hh-hHHHH----------hcCChHHHHHHhc
Q 015687 143 ASGTSENTRVVID-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLVL----------SNGALMPLLAQFN 209 (402)
Q Consensus 143 ~~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~~~----------~~g~i~~L~~~l~ 209 (402)
.-. ......+++ ...+..|...|.++++.++..++..|..+|.... .. ...++ +..-+..++..+.
T Consensus 148 mN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~ 226 (383)
T 3eg5_B 148 MNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK 226 (383)
T ss_dssp TSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred hcc-hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 875 344444444 5789999999999999999999999999986653 21 23332 2344777788775
Q ss_pred cchhhHHHHHHHHHHHHhhhCCC
Q 015687 210 EHAKLSMLRNATWTLSNFCRGKP 232 (402)
Q Consensus 210 ~~~~~~~~~~a~~~L~~l~~~~~ 232 (402)
...+.+....++..+-.+....+
T Consensus 227 ~~~~~e~~~~~m~lIN~li~~~~ 249 (383)
T 3eg5_B 227 SGTSIALKVGCLQLINALITPAE 249 (383)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCC
T ss_pred ccCcHHHHHHHHHHHHHHHcCCC
Confidence 44566666666666666666544
No 120
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.94 E-value=0.3 Score=42.66 Aligned_cols=173 Identities=12% Similarity=0.061 Sum_probs=104.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCC----chHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCch
Q 015687 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG----AVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPK 190 (402)
Q Consensus 116 i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g----~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~ 190 (402)
+..+.++++.+. +.+.-++..++-.+.+ +.....+.+.+ ++..+...+.+ ..+..+-.++++++|+.....
T Consensus 105 l~~l~kil~WP~--~~~fPvLDLlRl~~l~-p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~- 180 (304)
T 3ebb_A 105 LQILWKAINCPE--DIVFPALDILRLSIKH-PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA- 180 (304)
T ss_dssp HHHHHHHHTSCT--TTCHHHHHHHHHHTTS-HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-
T ss_pred HHHHHHHHcCCH--HhHHHHHHHHHHHHcC-ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-
Confidence 556666665443 4566677777665543 44433333322 22334444443 456678899999999987765
Q ss_pred hhHHHHhcCChHHHHHHhc---cchhhHHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHHHhccC-CChhHHHHHHHHH
Q 015687 191 CRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHS-NDDEVLTDACWAL 265 (402)
Q Consensus 191 ~~~~~~~~g~i~~L~~~l~---~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~l 265 (402)
.++.+.. ....++..+. .+.+..++..++..+.|++-.. ..........++..+..++.. .|.+....++-+|
T Consensus 181 g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL 258 (304)
T 3ebb_A 181 GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL 258 (304)
T ss_dssp HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 5666654 2344444442 3456788888888888888653 222233334455666666643 5889999999999
Q ss_pred HHhccCChHHHHHHHHhCcHHHHHHhcCC
Q 015687 266 SYLSDGTNDKIQAVIEAGVCPRLVELLRH 294 (402)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~i~~L~~~L~~ 294 (402)
+++...+.+..+.....|+-..+-...+.
T Consensus 259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred HHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 99997766554434344555555555544
No 121
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.43 E-value=0.14 Score=44.69 Aligned_cols=139 Identities=14% Similarity=0.120 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHhccCCCCchhH-Hhhc----CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhC--Cc
Q 015687 86 NIQLDATTQFRKLLSIERSPPINE-VIQS----GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH--GA 158 (402)
Q Consensus 86 ~~~~~a~~~l~~l~s~~~~~~~~~-~~~~----g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--g~ 158 (402)
+.++-++..+|-.+- .+.... +.+. .++..+...+.+...+..+..++++++|+... +..+..+... .+
T Consensus 117 ~~~fPvLDLlRl~~l---~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~~~l~~~~~~i 192 (304)
T 3ebb_A 117 DIVFPALDILRLSIK---HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAGQKLMMSQRESL 192 (304)
T ss_dssp TTCHHHHHHHHHHTT---SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHHHHHHHHTHHHH
T ss_pred HhHHHHHHHHHHHHc---CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chhHHHHHHHHHHH
Confidence 445555666665542 222222 2221 12334445555443467799999999999985 5566665542 35
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhh--HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR--DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 159 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~--~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
++.+...+.+++..++..++.++.|++......+ +... ..+..+..++....|.+....++-+|.+|...
T Consensus 193 l~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~--~ll~~l~~il~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 193 MSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKA--QCLSLISTILEVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp HHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHH--HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence 5666666667899999999999999984311100 1111 13344445554456778888888888888865
No 122
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=95.42 E-value=0.23 Score=43.52 Aligned_cols=110 Identities=17% Similarity=0.117 Sum_probs=86.5
Q ss_pred HHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhc-cCCChhHHH
Q 015687 181 LGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLT 259 (402)
Q Consensus 181 L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~ 259 (402)
|.|+..+....-+-+.+..++..+...+ +.++.++.+..+..|...+..+ ..........+|.+...+ .+++.++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCcceEE
Confidence 3445555555668888889999998888 7788899999999998887653 222233467888888877 467899999
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc
Q 015687 260 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 292 (402)
Q Consensus 260 ~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L 292 (402)
.....|+|...+.....+..+..|++..|...+
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I 376 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTII 376 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHH
Confidence 999999999998888888888999999988876
No 123
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=95.30 E-value=2.3 Score=44.14 Aligned_cols=133 Identities=16% Similarity=0.131 Sum_probs=85.1
Q ss_pred hHHHHHHhccc---hhhHHHHHHHHHHHHhh----hCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCCh
Q 015687 201 LMPLLAQFNEH---AKLSMLRNATWTLSNFC----RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 273 (402)
Q Consensus 201 i~~L~~~l~~~---~~~~~~~~a~~~L~~l~----~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~ 273 (402)
+..+..++... .++.+...+..+++.|. ...+......+..+...+.+.+...+.+-..-++.+|+|+...
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-- 470 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-- 470 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence 44455555322 24556666666665554 3333333344566666777777777888889999999998742
Q ss_pred HHHHHHHHhCcHHHHHHhcCC-------CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhc-CCCchhHHHH
Q 015687 274 DKIQAVIEAGVCPRLVELLRH-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKE 345 (402)
Q Consensus 274 ~~~~~~~~~~~i~~L~~~L~~-------~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~-~~~~~~v~~~ 345 (402)
..++.|.+++.. ....++..|+++|.++....+...+ +.++++.. ..+++++|..
T Consensus 471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHH
T ss_pred ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHHH
Confidence 235666666632 1346888999999999976654433 34666663 3347899999
Q ss_pred HHHHHHH
Q 015687 346 ACWTISN 352 (402)
Q Consensus 346 a~~~L~n 352 (402)
|+..|..
T Consensus 534 A~~~Lm~ 540 (1056)
T 1lsh_A 534 SCIVFFE 540 (1056)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888853
No 124
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=95.27 E-value=1.4 Score=38.69 Aligned_cols=129 Identities=13% Similarity=0.144 Sum_probs=98.8
Q ss_pred HHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHH
Q 015687 266 SYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE 345 (402)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~ 345 (402)
.++.-++.+.++-++..+++..+......++..+....+..+-.++....- ...- -...+|.++..+.-..+.++.-.
T Consensus 267 L~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL-~~t~-L~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 267 LGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKAL-AKTP-LENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGG-GTSC-CTTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHH-hhcc-ccccchHHHHHhccCCCcceEEe
Confidence 355567778889999999999999999999999999998888777543221 1000 12568888888864447889999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-------CCHHHHHHHHHHHHHhh
Q 015687 346 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-------AEFEIKKEAAWAISNAT 396 (402)
Q Consensus 346 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-------~~~~v~~~a~~aL~nl~ 396 (402)
....|+|+.++.....+.-+.+|.++.|...+.. .+..-++.||..++|..
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~L 402 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCL 402 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHH
Confidence 9999999999988877778899999999998743 34456777888888754
No 125
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.98 E-value=1 Score=46.79 Aligned_cols=202 Identities=15% Similarity=0.172 Sum_probs=125.8
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC----CCHHHHHHHHHHHHHhh----C
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS----PTDDVREQAVWALGNVA----G 186 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nl~----~ 186 (402)
.+..+.+++.+.. -.. .+|+++|...... ..... ..+..+..++.+ .++.+++.++-++++++ .
T Consensus 357 a~~~i~~~i~~~~-l~~-~ea~~~l~~~~~~-~~Pt~-----e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~ 428 (1056)
T 1lsh_A 357 ALLFLKRTLASEQ-LTS-AEATQIVASTLSN-QQATR-----ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCA 428 (1056)
T ss_dssp HHHHHHHHHHTTC-SCH-HHHHHHHHHHHHT-CCCCH-----HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC-CCH-HHHHHHHHHhhcc-CCCCH-----HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhc
Confidence 3555666666654 121 2355555433221 11111 245566667765 56788888888888875 2
Q ss_pred CCchhhHHHHhcCChHHHHHHhc---cchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccC-------CChh
Q 015687 187 DSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-------NDDE 256 (402)
Q Consensus 187 ~~~~~~~~~~~~g~i~~L~~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~-------~~~~ 256 (402)
+.+.+.. ..++.+.+.+. ...+.+-...++.+|.|+-.. ..++.|.+++.. ....
T Consensus 429 ~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~r 493 (1056)
T 1lsh_A 429 NTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTR 493 (1056)
T ss_dssp TCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHH
T ss_pred cCCCCCH-----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchH
Confidence 3222211 23455554442 334566678888999998753 467777777742 1356
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc--CCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHh
Q 015687 257 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL 334 (402)
Q Consensus 257 v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L--~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll 334 (402)
++..|+++|..+....+..++ +.+.+++ ...++++|..|+..|-.. .++. ..+..+...+
T Consensus 494 vr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRiaA~~~Lm~t--~P~~--------~~l~~ia~~l 555 (1056)
T 1lsh_A 494 VQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES--KPSV--------ALVSMVAVRL 555 (1056)
T ss_dssp HHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT--CCCH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHHHHHHHHHHH--CcCH--------HHHHHHHHHH
Confidence 889999999999876654433 5677777 456788999998887432 2221 2345677777
Q ss_pred cCCCchhHHHHHHHHHHHHhcCC
Q 015687 335 TQNYKKSIKKEACWTISNITAGN 357 (402)
Q Consensus 335 ~~~~~~~v~~~a~~~L~nl~~~~ 357 (402)
....+..|.......|.+++..+
T Consensus 556 ~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 556 RREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTCC
T ss_pred hhCchHHHHHHHHHHHHHHHhcC
Confidence 76558889988888999998743
No 126
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=94.97 E-value=1.2 Score=40.37 Aligned_cols=141 Identities=11% Similarity=0.126 Sum_probs=91.0
Q ss_pred HHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcC----C------CCHHHHHHHHHHHHHhhcCCCcchHHHH-hCCch
Q 015687 91 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----D------DFPQLQFEAAWALTNIASGTSENTRVVI-DHGAV 159 (402)
Q Consensus 91 a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~----~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~g~i 159 (402)
.+..|+..+..+...-++.|. .+++..|+.+|.. . .+...+..++.||..+... ......++ ..+++
T Consensus 25 ~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i 102 (386)
T 2bnx_A 25 CLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGI 102 (386)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHH
T ss_pred HHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHH
Confidence 445555545433222345564 4567777777642 1 1257889999999999875 33444444 45789
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hh-hHHHH----------hcCChHHHHHHhccchhhHHHHHHHHHHHHh
Q 015687 160 PIFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLVL----------SNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (402)
Q Consensus 160 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~~~----------~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l 227 (402)
..+...|.++++.++..++..|..+|..+. .. ...++ +..-+.+++..+..+.+.+....++..+-.+
T Consensus 103 ~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~l 182 (386)
T 2bnx_A 103 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 182 (386)
T ss_dssp HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 999999999999999999999988886543 21 22222 2335667788775556667766666666666
Q ss_pred hhCCCC
Q 015687 228 CRGKPQ 233 (402)
Q Consensus 228 ~~~~~~ 233 (402)
....+.
T Consensus 183 v~~~~d 188 (386)
T 2bnx_A 183 ITPAEE 188 (386)
T ss_dssp HTTCSC
T ss_pred HCCCCC
Confidence 666443
No 127
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=94.61 E-value=2.5 Score=38.10 Aligned_cols=88 Identities=11% Similarity=0.173 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHh
Q 015687 86 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL 165 (402)
Q Consensus 86 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 165 (402)
+.+...+..++.++-.. ++. .-..+++.++++-.+.+ .+++...+..|...+....+.. . .+++.|..+
T Consensus 40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~---~--~~l~~L~~L 108 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELL---L--KLIANLNML 108 (386)
T ss_dssp THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGH---H--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHH
Confidence 46888888888875533 232 22457999999998888 8999999999988876433332 2 367888889
Q ss_pred hCCCCHHHHHHHHHHHHHh
Q 015687 166 LSSPTDDVREQAVWALGNV 184 (402)
Q Consensus 166 L~~~~~~v~~~a~~~L~nl 184 (402)
|+++++.+...++.+.+++
T Consensus 109 L~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 109 LRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp HTCSSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHH
Confidence 9999999999999988887
No 128
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=94.59 E-value=1.2 Score=47.04 Aligned_cols=247 Identities=12% Similarity=0.081 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHH-hh-CCCCHHHHHHHHHHHHHhhCC-----CchhhHHHHhcCCh
Q 015687 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LL-SSPTDDVREQAVWALGNVAGD-----SPKCRDLVLSNGAL 201 (402)
Q Consensus 129 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL-~~~~~~v~~~a~~~L~nl~~~-----~~~~~~~~~~~g~i 201 (402)
+..+.+|-..|..+-.. ++ +...+.. +. .+.+..+|..|+.+|.|.... +++.+..+. ..++
T Consensus 27 ~~~r~~Ae~~L~~~~~~-p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-~~ll 95 (1204)
T 3a6p_A 27 QRYRLEALKFCEEFKEK-CP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-NSVM 95 (1204)
T ss_dssp HHHHHHHHHHHHHHHHH-CT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-HHHH
T ss_pred hHHHHHHHHHHHHHHhC-ch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HHHH
Confidence 67888888888776543 21 3333333 33 456889999999999987632 232333332 2233
Q ss_pred HHHHHHhcc--chhhHHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccC-------
Q 015687 202 MPLLAQFNE--HAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG------- 271 (402)
Q Consensus 202 ~~L~~~l~~--~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~------- 271 (402)
..+...... ..+..++..++.+++.+.... |. .-..+++.++.++.+ ++.....++.+|..++..
T Consensus 96 ~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~----~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~ 170 (1204)
T 3a6p_A 96 ELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ----HWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTL 170 (1204)
T ss_dssp HHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCS
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccch
Confidence 333222101 135678888899999988775 31 225778888888865 455567777888777532
Q ss_pred ChHHHHH---HHHh---CcHHHHHHhcCC-------------------CChhhHHHHHHHHHHhhcCChHHHHHHHhCC-
Q 015687 272 TNDKIQA---VIEA---GVCPRLVELLRH-------------------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQ- 325 (402)
Q Consensus 272 ~~~~~~~---~~~~---~~i~~L~~~L~~-------------------~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~- 325 (402)
...+... .+.. .+++.+..++.. .+..+...++.++.+....-+. ..+.+..
T Consensus 171 ~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~~~~~ 248 (1204)
T 3a6p_A 171 PPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHITAENC 248 (1204)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHHhccc
Confidence 1111111 1111 223333333322 1234667788888877664442 2233433
Q ss_pred -ChHHHHHHhcCCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHc---CCHHHHHHHhc--------cCCHHHHHHHHHH
Q 015687 326 -ALPCLLDLLTQNYKKSIKKEACWTISNITAG--NVNQIQAIIEA---GIIGPLVNLLL--------NAEFEIKKEAAWA 391 (402)
Q Consensus 326 -~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~---~~i~~L~~ll~--------~~~~~v~~~a~~a 391 (402)
+++.+..++. ++.++..|+-+|..++.. .++....++.. ..+..++..+. +.+.++.+..+..
T Consensus 249 ~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~l 325 (1204)
T 3a6p_A 249 KLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQV 325 (1204)
T ss_dssp HHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHH
Confidence 6777776665 467899999999999973 24443333321 11234444432 2235666666666
Q ss_pred HHHhh
Q 015687 392 ISNAT 396 (402)
Q Consensus 392 L~nl~ 396 (402)
+..+.
T Consensus 326 l~~lg 330 (1204)
T 3a6p_A 326 LCALG 330 (1204)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 129
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=94.52 E-value=1.8 Score=36.14 Aligned_cols=166 Identities=11% Similarity=0.128 Sum_probs=100.6
Q ss_pred CcchHHHHhCCchHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhH
Q 015687 147 SENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLS 215 (402)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~ 215 (402)
..+.+.+ ..+++..|+.+|.. .+......++.||..+.....+....+...+.+..+...+ .++++.
T Consensus 34 ~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L-~s~~~~ 111 (233)
T 2f31_A 34 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPN 111 (233)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTC-CTTSHH
T ss_pred cHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHh-CCCCch
Confidence 3455555 34667777776642 1456778899999999877766655555556777777777 778888
Q ss_pred HHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-C
Q 015687 216 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-H 294 (402)
Q Consensus 216 ~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~-~ 294 (402)
++..++..|..+|...... |..+.++..+. +... .-+..-+..++..+. +
T Consensus 112 ~r~~~leLL~~lc~~~~~~------G~~~~VL~Al~---------------~~~~--------~~e~~RF~~lv~~l~~~ 162 (233)
T 2f31_A 112 MMIDAAKLLSALCILPQPE------DMNERVLEAMT---------------ERAE--------MDEVERFQPLLDGLKSG 162 (233)
T ss_dssp HHHHHHHHHHHHHTCSSSS------CHHHHHHHHHH---------------HHHH--------HHTSCTTHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHhCCCCC------ChHHHHHHHHH---------------HHHH--------hCCcchHHHHHHHHhcC
Confidence 9999999999998774211 10222222221 1100 012233556666675 4
Q ss_pred CChhhHHHHHHHHHHhhcCChH------HHHHHHhCCChHHHHHHhcCCCchhHHH
Q 015687 295 PSPSVLIPALRTVGNIVTGDDM------QTQCIINHQALPCLLDLLTQNYKKSIKK 344 (402)
Q Consensus 295 ~~~~v~~~a~~~l~nl~~~~~~------~~~~i~~~~~l~~L~~ll~~~~~~~v~~ 344 (402)
.+...+..++..|..++.+.++ .+..+...|+.+.+-++=... ++.+..
T Consensus 163 ~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~-~~~L~~ 217 (233)
T 2f31_A 163 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIE-NEDMKV 217 (233)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCC-CHHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccC-CHHHHH
Confidence 4567788888888888876642 234455667766666554444 554443
No 130
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=94.32 E-value=2.1 Score=36.18 Aligned_cols=101 Identities=6% Similarity=0.080 Sum_probs=71.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
+-.+++.-+....+.+...+...+.++... ++. +. ..+++.++.+..+.+ .+++...+..+...+...++...
T Consensus 17 v~~lln~A~~~~~~~kl~~L~qa~el~~~~-dp~---ll-~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~- 89 (257)
T 3gs3_A 17 VVDWCNELVIASPSTKCELLAKVQETVLGS-CAE---LA-EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLP- 89 (257)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHTTT-TGG---GH-HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-
T ss_pred HHHHHHHhhhcCcHHHHHHHHHHHHHHHcc-CHh---HH-HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHH-
Confidence 344555444433368888999999976643 222 11 236788888877766 89999999999888864333222
Q ss_pred HHhCCchHHHHHhhCCCCHHHHHHHHHHHHHh
Q 015687 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 184 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl 184 (402)
..++.|..+++++++.+...++.+.+++
T Consensus 90 ----~~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 90 ----HVINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp ----HHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3678888899999999999999888876
No 131
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=94.14 E-value=2.5 Score=38.19 Aligned_cols=145 Identities=12% Similarity=0.141 Sum_probs=92.8
Q ss_pred CcchHHHHhCCchHHHHHhhC-----------CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhH
Q 015687 147 SENTRVVIDHGAVPIFVRLLS-----------SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLS 215 (402)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~lL~-----------~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~ 215 (402)
..+...++ .+++..|+.+|. ..+......++.||..+.....+....+-..+.+..+...+ .+..+.
T Consensus 100 ~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L-~s~~~~ 177 (383)
T 3eg5_B 100 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPN 177 (383)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTC-CTTSHH
T ss_pred cHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHh-CCCchH
Confidence 45556665 466777777764 12457888899999999877666555555556788888887 778889
Q ss_pred HHHHHHHHHHHhhhCCC-CCchhhh------------hchHHHHHHhccC-CChhHHHHHHHHHHHhccCChHH------
Q 015687 216 MLRNATWTLSNFCRGKP-QPLFEQT------------RPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDK------ 275 (402)
Q Consensus 216 ~~~~a~~~L~~l~~~~~-~~~~~~~------------~~~l~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~~~------ 275 (402)
++..++..|..+|.... ..-...+ ..-+..++..|.. .+.+....++..+..+..+.++.
T Consensus 178 ~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~l 257 (383)
T 3eg5_B 178 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHI 257 (383)
T ss_dssp HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 99999999999998753 2201111 1124556777765 56777777777776666554422
Q ss_pred HHHHHHhCcHHHHHHhcCC
Q 015687 276 IQAVIEAGVCPRLVELLRH 294 (402)
Q Consensus 276 ~~~~~~~~~i~~L~~~L~~ 294 (402)
...+...|+.+.+-. |..
T Consensus 258 R~ef~~~Gl~~il~~-lr~ 275 (383)
T 3eg5_B 258 RSELMRLGLHQVLQE-LRE 275 (383)
T ss_dssp HHHHHHTTHHHHHHH-HTT
T ss_pred HHHHHHCChHHHHHH-Hhc
Confidence 122345566555544 543
No 132
>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B
Probab=94.11 E-value=0.036 Score=31.39 Aligned_cols=38 Identities=37% Similarity=0.538 Sum_probs=27.8
Q ss_pred HHhhhccC-CCCchHHhhhhHHHHHHHHHHhhhHHHHhhhh
Q 015687 11 VRRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRR 50 (402)
Q Consensus 11 ~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~~~~kr~ 50 (402)
+|...||+ +...++..++| + ..+..|++|-+.++..|+
T Consensus 2 PR~sqYK~k~~~~~q~~rRr-~-~L~~QK~~R~D~~nhaR~ 40 (40)
T 2p8q_B 2 PRLSQYKSKYSSLEQSERRR-R-LLELQKSKRLDYVNHARR 40 (40)
T ss_dssp CCGGGTTCCCCSCSTTHHHH-H-HHHHHHHHHHHHHHTTTC
T ss_pred ccHHhhccccchhhHHHHHH-H-HHHHHHHHHHHHHHHhcC
Confidence 57889999 45544444444 4 688999999999887774
No 133
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=91.94 E-value=5 Score=36.86 Aligned_cols=231 Identities=11% Similarity=0.045 Sum_probs=123.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
+..|+..+.|+|+..+..--..|..+-.. -...+.++...+-..+.+++.......-..+.+.+++.|..|-.--...
T Consensus 164 i~~Ll~lfdSeDpRERd~LktiLhrIY~K--f~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKe 241 (449)
T 2npp_B 164 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 241 (449)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHS--CTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcH
Confidence 56788888899998888888888777542 3444455544455667777655432333456778888887663211111
Q ss_pred HHhCCchHHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 153 VIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
-...=....|+.|.+.... .-..+-..++..+...++..... ++..|++.- ..++..-....+.-+..+...-
T Consensus 242 ehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~W-P~tns~KevlFL~eleeile~~ 315 (449)
T 2npp_B 242 EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYW-PKTHSPKEVMFLNELEEILDVI 315 (449)
T ss_dssp HHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTC-CSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhC-CCCCchHHHHHHHHHHHHHHhC
Confidence 1111123344444443322 12234445555555444443222 233333332 2222222222333344444432
Q ss_pred CCCch-hhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhcC-----CCChhhHHH
Q 015687 232 PQPLF-EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLR-----HPSPSVLIP 302 (402)
Q Consensus 232 ~~~~~-~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~~L~-----~~~~~v~~~ 302 (402)
+...+ .....++..+..++.+++-.|.+.|+....| +.. -.++.. .++|.+...|. |=+..++..
T Consensus 316 ~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N-----~~i-~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~l 389 (449)
T 2npp_B 316 EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN-----EYI-MSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGL 389 (449)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHH-HHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCC-----HHH-HHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHH
Confidence 22222 2335677788888899888888887644321 111 222221 24566666553 225679999
Q ss_pred HHHHHHHhhcCChHH
Q 015687 303 ALRTVGNIVTGDDMQ 317 (402)
Q Consensus 303 a~~~l~nl~~~~~~~ 317 (402)
+..++.-+...++..
T Consensus 390 a~~vlk~l~e~d~~l 404 (449)
T 2npp_B 390 IYNALKLFMEMNQKL 404 (449)
T ss_dssp HHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHCHHH
Confidence 999998887766643
No 134
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=91.71 E-value=3.7 Score=36.97 Aligned_cols=162 Identities=15% Similarity=0.173 Sum_probs=104.7
Q ss_pred CChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHh--------cc
Q 015687 199 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL--------SD 270 (402)
Q Consensus 199 g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l--------~~ 270 (402)
++++.++.+. .+.+.++++.++.++...|.. .......+++.|..+|.++|+.+...++.+..++ +.
T Consensus 63 ~fl~~il~f~-~d~~~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~ 137 (386)
T 3o2t_A 63 NFLDEIIAFQ-ADKSIEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVK 137 (386)
T ss_dssp GGHHHHHGGG-GCSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-cCCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4778888777 667899999999999999864 2334577888999999988998887777665544 22
Q ss_pred CCh--HHHHHHHH--hCcHHHHHHhcCCCChhhHHHHHHHHHHhhc----CC-h-H---------------------HHH
Q 015687 271 GTN--DKIQAVIE--AGVCPRLVELLRHPSPSVLIPALRTVGNIVT----GD-D-M---------------------QTQ 319 (402)
Q Consensus 271 ~~~--~~~~~~~~--~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~----~~-~-~---------------------~~~ 319 (402)
.+. +..+...+ ..+-..++.++.+.+..++..|+..+-.++- +. + . ...
T Consensus 138 ~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~ 217 (386)
T 3o2t_A 138 SRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYN 217 (386)
T ss_dssp C-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHH
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHH
Confidence 221 11111111 1344567777888899999999998887651 10 0 0 001
Q ss_pred HH--HhCCChHHHHHHhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHH
Q 015687 320 CI--INHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQIQAII 365 (402)
Q Consensus 320 ~i--~~~~~l~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~ 365 (402)
.+ -..+++..|+.++.++. ++..-..+..+|++|+...|.....++
T Consensus 218 ~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl 266 (386)
T 3o2t_A 218 VLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVI 266 (386)
T ss_dssp HHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHH
Confidence 11 12377888999887641 344555677888888876666555544
No 135
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=91.68 E-value=3 Score=35.93 Aligned_cols=137 Identities=11% Similarity=0.055 Sum_probs=86.3
Q ss_pred ChhHHHHHHHHHHHhccCChHHHHHHH-HhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhC--CChHHH
Q 015687 254 DDEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH--QALPCL 330 (402)
Q Consensus 254 ~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~--~~l~~L 330 (402)
|.+....++..|..++-.-....+..- +..++..|+ +.....+.+++.|.++|+....++|.....+.+. .++..+
T Consensus 41 D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l 119 (315)
T 3qml_C 41 DIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI 119 (315)
T ss_dssp HHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence 555677788888777743333333222 223444444 3344567899999999999999999888877653 444444
Q ss_pred HHHhcC----C--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccC--CHHHHHHHHHHHHHhh
Q 015687 331 LDLLTQ----N--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNAT 396 (402)
Q Consensus 331 ~~ll~~----~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~ 396 (402)
..-|.. . ....+.+.-+.+|.-|...+.. + ....+..|.+++... ++.+|..++..+..+-
T Consensus 120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 433322 1 1335666667777777765321 1 134667777777776 8889998888887765
No 136
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=91.23 E-value=5 Score=36.30 Aligned_cols=132 Identities=13% Similarity=0.105 Sum_probs=80.3
Q ss_pred ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-HH-HHHHH---------
Q 015687 254 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQ-TQCII--------- 322 (402)
Q Consensus 254 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~-~~-~~~i~--------- 322 (402)
+......++.||..+.......-..+-..+++..+...|.++++.++..++..|+.+|..+. .. ...++
T Consensus 71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~ 150 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 150 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh
Confidence 45677888899988886655543434445788999999999999999999999998887553 12 22232
Q ss_pred -hCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH--HHH----HHHHHcCCHHHHHHHhccCCHHHH
Q 015687 323 -NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV--NQI----QAIIEAGIIGPLVNLLLNAEFEIK 385 (402)
Q Consensus 323 -~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~--~~~----~~l~~~~~i~~L~~ll~~~~~~v~ 385 (402)
+..-+..++..+....+.+.+..+...+-.+..+.+ +.+ ..+...|+.+.+-.+-...++++.
T Consensus 151 ~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~ 220 (386)
T 2bnx_A 151 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMK 220 (386)
T ss_dssp HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHH
T ss_pred CchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHH
Confidence 224566677777655344555444444444444322 222 234456666555544333555443
No 137
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=90.04 E-value=6.5 Score=35.51 Aligned_cols=229 Identities=12% Similarity=0.064 Sum_probs=115.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
+..|+..+.|+|+..+...-..|..+-.. -.....++...+-..|..++.......-..+.+.+++.|..|-..-...
T Consensus 131 i~~Ll~lfdSeDprER~~LktiLhrIY~k--f~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLke 208 (403)
T 3fga_B 131 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 208 (403)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchH
Confidence 56678888888888888777777776432 2334445544445566666654331222345666777666543211111
Q ss_pred HHhCCchHHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 153 VIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
-...-....|+.|.+.... .-..+-..++......+|..... ++..+++.- ..++..-...-+.-+..+...-
T Consensus 209 ehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~W-P~tns~KevlFL~Ele~iLe~~ 282 (403)
T 3fga_B 209 EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYW-PKTHSPKEVMFLNELEEILDVI 282 (403)
T ss_dssp HHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTC-CSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhC-CCCCcHHHHHHHHHHHHHHHhC
Confidence 1111122334444443322 22245555666565555543222 223333332 2222222222333344444432
Q ss_pred CCCch-hhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhc-----CCCChhhHHH
Q 015687 232 PQPLF-EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELL-----RHPSPSVLIP 302 (402)
Q Consensus 232 ~~~~~-~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~~L-----~~~~~~v~~~ 302 (402)
+...+ .....++..+..++.+++-.|.+.|+.... ++ .+-.++.. .++|.+...| .|=+..++..
T Consensus 283 ~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wn-----Ne-~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l 356 (403)
T 3fga_B 283 EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN-----NE-YIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGL 356 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG-----CH-HHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhc-----cH-HHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 22222 233566777888888888888887764431 12 22222222 2445555444 2336788888
Q ss_pred HHHHHHHhhcCCh
Q 015687 303 ALRTVGNIVTGDD 315 (402)
Q Consensus 303 a~~~l~nl~~~~~ 315 (402)
+..++.-+...++
T Consensus 357 ~~~vlk~l~e~d~ 369 (403)
T 3fga_B 357 IYNALKLFMEMNQ 369 (403)
T ss_dssp HHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhCH
Confidence 8888887766544
No 138
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=89.10 E-value=13 Score=33.66 Aligned_cols=234 Identities=13% Similarity=0.061 Sum_probs=114.3
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
..++...+-.|+.++.++|+.=|+..-.+|.++-+.-...|..+... +-..+.+.+.......=....+.++..+..+.
T Consensus 124 ~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~-innif~~fiye~e~~~GIaeLLeilgsIinGf 202 (403)
T 3fga_B 124 KYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSIINGF 202 (403)
T ss_dssp TTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHC
T ss_pred hhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHhcCcccCCCHHHHHHHHHHHHccc
Confidence 34445567889999999999999999999998876555455444331 22333443322211111234555556666655
Q ss_pred CCCc-hhhhhchHHHHHHhccCCChh-HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 015687 232 PQPL-FEQTRPALPALERLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (402)
Q Consensus 232 ~~~~-~~~~~~~l~~L~~lL~~~~~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~n 309 (402)
..+- .....-...+|+++-....-. .......++......++.....+ +..|+.+==..+..=...-+.-+..
T Consensus 203 a~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~Ele~ 277 (403)
T 3fga_B 203 ALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELEE 277 (403)
T ss_dssp CSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCcHHHHHHHHHHHH
Confidence 2222 222222344455555443322 22333344444444444332211 2222222222233223334444555
Q ss_pred hhcCC-hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH-----HHhcCCHHHHHHHHHcCCHHHHHHHhccC-CH
Q 015687 310 IVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS-----NITAGNVNQIQAIIEAGIIGPLVNLLLNA-EF 382 (402)
Q Consensus 310 l~~~~-~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~-----nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~ 382 (402)
+.... +...+.+.. .++..+...+.++ ...|-+.|..... ++...+...+-.+ ++|.|.+....+ +.
T Consensus 278 iLe~~~~~~f~~i~~-~lf~~la~ci~S~-hfqVAErAL~~wnNe~i~~li~~n~~~IlPi----i~p~L~~~~~~HWn~ 351 (403)
T 3fga_B 278 ILDVIEPSEFVKIME-PLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLISDNAAKILPI----MFPSLYRNSKTHWNK 351 (403)
T ss_dssp HHTTCCHHHHHHHHH-HHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHHHTTHHHHHHH----HHHHHHHTTSCCSCH
T ss_pred HHHhCCHHHHHHHHH-HHHHHHHHHHCCC-CHHHHHHHHHHhccHHHHHHHHHhHHHHHHH----HHHHHHHHHHHccCH
Confidence 55433 333332322 4566777777777 7777777665432 2222222222111 233344433332 67
Q ss_pred HHHHHHHHHHHHhhc
Q 015687 383 EIKKEAAWAISNATS 397 (402)
Q Consensus 383 ~v~~~a~~aL~nl~~ 397 (402)
.++..|..++.-+..
T Consensus 352 ~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 352 TIHGLIYNALKLFME 366 (403)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 788888888776643
No 139
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=86.73 E-value=19 Score=33.06 Aligned_cols=234 Identities=14% Similarity=0.063 Sum_probs=116.5
Q ss_pred chHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhh
Q 015687 149 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (402)
Q Consensus 149 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~ 228 (402)
.....++...+-.|+.++.++|+.=|+....+|..+-+.-...|..+... +-..+.+.+.......=....+.++..+.
T Consensus 154 ~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgSIi 232 (449)
T 2npp_B 154 IAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSII 232 (449)
T ss_dssp TGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHHHH
T ss_pred hhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHHHH
Confidence 34556666788899999999999999999999988865544455544432 23334444422222222335566666666
Q ss_pred hCCCCC-chhhhhchHHHHHHhccCCChh-HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHH
Q 015687 229 RGKPQP-LFEQTRPALPALERLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306 (402)
Q Consensus 229 ~~~~~~-~~~~~~~~l~~L~~lL~~~~~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~ 306 (402)
.+...+ ......-...+|+++.....-. .......++..+...++..... ++..|+.+==..+..=...-+.-
T Consensus 233 nGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~e 307 (449)
T 2npp_B 233 NGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLNE 307 (449)
T ss_dssp SSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTCCSSCHHHHHHHHHH
T ss_pred hccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhCCCCCchHHHHHHHH
Confidence 665222 1222223344555555444322 2223334444434333333221 12223222212232222334444
Q ss_pred HHHhhcCC-hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---cCCHHHHHHHhcc---
Q 015687 307 VGNIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLLLN--- 379 (402)
Q Consensus 307 l~nl~~~~-~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~~--- 379 (402)
|..+.... +...+.+.. .++..+...++++ ...|-+.|+....| +.+..++. ..++|.++..|..
T Consensus 308 leeile~~~~~ef~~i~~-~lF~~la~ci~S~-hfqVAErAL~~w~N------~~i~~li~~n~~~IlPii~p~L~~~s~ 379 (449)
T 2npp_B 308 LEEILDVIEPSEFVKIME-PLFRQLAKCVSSP-HFQVAERALYYWNN------EYIMSLISDNAAKILPIMFPSLYRNSK 379 (449)
T ss_dssp HHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCS-CHHHHHHHHGGGGC------HHHHHHHHTTHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHhCCHHHHHHHHH-HHHHHHHHHHcCC-CHHHHHHHHHHHCC------HHHHHHHHhchhhhHHhhHHHHHHHHH
Confidence 55555432 333333322 4566777777777 77777776644321 11122221 1134555555422
Q ss_pred -C-CHHHHHHHHHHHHHhh
Q 015687 380 -A-EFEIKKEAAWAISNAT 396 (402)
Q Consensus 380 -~-~~~v~~~a~~aL~nl~ 396 (402)
+ +..++..|..++.-+.
T Consensus 380 ~HWn~~V~~la~~vlk~l~ 398 (449)
T 2npp_B 380 THWNKTIHGLIYNALKLFM 398 (449)
T ss_dssp CCSSTTHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHH
Confidence 1 4567777777765443
No 140
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=85.01 E-value=1.6 Score=34.16 Aligned_cols=74 Identities=12% Similarity=0.061 Sum_probs=56.5
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~ 144 (402)
+++..+.+.|++.++.++..|+..|-.++..-......++....++..|+.++....++.++..++..+...+.
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 46778888899999999999999999887653233344666778889999988763448899888888766554
No 141
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=84.77 E-value=1.1 Score=33.92 Aligned_cols=73 Identities=14% Similarity=0.115 Sum_probs=54.8
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~ 144 (402)
+++..+.+.|++.++..+..|+..|-.++..-......++....++..|+.++...+ +.++..++..+...+.
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~-~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGH-PKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHH
Confidence 467788888999999999999998888876432233345666678888888887666 8898888888876553
No 142
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=84.27 E-value=1.9 Score=33.07 Aligned_cols=74 Identities=14% Similarity=-0.028 Sum_probs=57.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcC-----CCCHHHHHHHHHHHHHhhc
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR-----DDFPQLQFEAAWALTNIAS 144 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~~~~~~a~~~L~~l~~ 144 (402)
+++..+.+.|++.++..+..|+..|-.++..-......++....++..|++++.. ..++.++..++..+...+.
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4678888899999999999999999998765323344667778899999999874 1237899998888877664
No 143
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=83.50 E-value=4.5 Score=41.58 Aligned_cols=188 Identities=12% Similarity=0.066 Sum_probs=113.0
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc---chhhHHHHHHHHHHHHhhhCC-CC
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE---HAKLSMLRNATWTLSNFCRGK-PQ 233 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~---~~~~~~~~~a~~~L~~l~~~~-~~ 233 (402)
++.-|+.+--+...+||..|-.+|......-+..+.. +++.+++.|.. ..+.+-.+-|+++|..=.... -.
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~ 208 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLM 208 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGG
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHh
Confidence 5667777778899999999999999998877666555 46778888755 445666677777665111111 22
Q ss_pred CchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccC--------------------C----hHHHHHH----------
Q 015687 234 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG--------------------T----NDKIQAV---------- 279 (402)
Q Consensus 234 ~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~--------------------~----~~~~~~~---------- 279 (402)
.+......+++.|+.....+.+.++.-+-.+...+... + +..++..
T Consensus 209 ~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~ 288 (997)
T 1vsy_5 209 TDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREY 288 (997)
T ss_dssp GCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHH
T ss_pred cChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 34455677888888887777766655444333222210 0 0001111
Q ss_pred -HH--hCcHHHHHHhc-CCCC--hhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHH
Q 015687 280 -IE--AGVCPRLVELL-RHPS--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353 (402)
Q Consensus 280 -~~--~~~i~~L~~~L-~~~~--~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl 353 (402)
.+ .++...++... .... +.....+++.+.++....+. .....++..+++.+.++ .|.+|+.|..++..+
T Consensus 289 ~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~----~~~~~~v~~~~~~l~~d-hp~~R~~a~~~l~~i 363 (997)
T 1vsy_5 289 YLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES----KPDKRAVFSIISQISTK-HPEIIHLVVKSLLST 363 (997)
T ss_dssp HHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC----CCCHHHHHHHHGGGGGC-CHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHHH
Confidence 00 12333444554 2234 66777777776555533220 11223455677788888 899999999888777
Q ss_pred hc
Q 015687 354 TA 355 (402)
Q Consensus 354 ~~ 355 (402)
..
T Consensus 364 l~ 365 (997)
T 1vsy_5 364 CN 365 (997)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 144
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=83.02 E-value=2.3 Score=32.58 Aligned_cols=73 Identities=11% Similarity=0.003 Sum_probs=57.4
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcC------CCCHHHHHHHHHHHHHhhc
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR------DDFPQLQFEAAWALTNIAS 144 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~------~~~~~~~~~a~~~L~~l~~ 144 (402)
+++..+.+.|++.++..+..|+..|-.++..-..+...++....++..|++++.. .+ +.++..++..+...+.
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~-~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTS-EKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCC-HHHHHHHHHHHHHHHH
Confidence 4678888899999999999999999888765423334567777889999999964 34 7899998888877665
No 145
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=80.70 E-value=1.5 Score=36.38 Aligned_cols=74 Identities=11% Similarity=0.107 Sum_probs=56.7
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~ 144 (402)
+++..|.+.|++.++.+++.|+..|-.++..-..+...++....++..|++++....++.++..++..+...+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999998887654233345566777888888888654447889888888877654
No 146
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=80.68 E-value=3.8 Score=31.92 Aligned_cols=74 Identities=12% Similarity=0.067 Sum_probs=57.3
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
++..|.+-|.+.++.++-.|+.+|-.+..+ .+.++..+....+++.++.++....++.++..+...+.......
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f 127 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF 127 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 466677777888999999999888888766 35577777777788899998865467888888888877776654
No 147
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=77.90 E-value=3.1 Score=32.74 Aligned_cols=74 Identities=14% Similarity=0.001 Sum_probs=56.7
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcC-----CCCHHHHHHHHHHHHHhhc
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR-----DDFPQLQFEAAWALTNIAS 144 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~~~~~~a~~~L~~l~~ 144 (402)
+++..+.+.|++.++.++..|+..|-.++..-......++....++..|+.++.. ..+..++..++..+...+.
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4677888899999999999999999988765323334567777889999999863 1237899998888877665
No 148
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=76.90 E-value=2 Score=44.18 Aligned_cols=182 Identities=10% Similarity=-0.051 Sum_probs=98.8
Q ss_pred ChHHHHHHhccchhhHHHHH-HHHHHHHhhhCCCCCchhhhhchHHHHHHhcc-CCChhHHHHHHHHHHH-----hccCC
Q 015687 200 ALMPLLAQFNEHAKLSMLRN-ATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSY-----LSDGT 272 (402)
Q Consensus 200 ~i~~L~~~l~~~~~~~~~~~-a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~l~~-----l~~~~ 272 (402)
++|.++.+.....+.++... +..++..++... - .......++..+..... +++. .+..++..+.. +..-.
T Consensus 761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~-~-~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~ 837 (997)
T 1vsy_5 761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMP-I-RKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLT 837 (997)
T ss_dssp TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSC-C-CHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCC-C-CHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcC
Confidence 44545555433444466666 666677776542 2 22333445555555555 3455 66666555432 22222
Q ss_pred hHHHHHHHHhCcHHHHHHhcCCCC-hhhHHHHHHHHHHhhcCC-h-HHHHHHHh---CCC-----hHHHHHHhcCCCchh
Q 015687 273 NDKIQAVIEAGVCPRLVELLRHPS-PSVLIPALRTVGNIVTGD-D-MQTQCIIN---HQA-----LPCLLDLLTQNYKKS 341 (402)
Q Consensus 273 ~~~~~~~~~~~~i~~L~~~L~~~~-~~v~~~a~~~l~nl~~~~-~-~~~~~i~~---~~~-----l~~L~~ll~~~~~~~ 341 (402)
.+.. ..+...++.+|.++. .+||+.|..+|+-+..+. + .....++. ..+ ...+.+-. +. +..
T Consensus 838 ~~~~-----~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~-~~-~~~ 910 (997)
T 1vsy_5 838 EEEK-----NKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKL-SK-TDI 910 (997)
T ss_dssp TTHH-----HHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHH-HH-HCH
T ss_pred HHHH-----HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhccccccccccc-ch-HHH
Confidence 2222 245778889999999 999999999999998776 4 33332322 122 12221111 11 224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh----ccCCHHHHHHHHHHHHHh
Q 015687 342 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL----LNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 342 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll----~~~~~~v~~~a~~aL~nl 395 (402)
.+..|+..|+.+....|-.+. -..-+|.++..| .++. .++..+-.+|+++
T Consensus 911 ~rH~aVLgL~AlV~a~Py~vP---~P~w~P~~l~~La~~~~~~~-~i~~tvk~tlseF 964 (997)
T 1vsy_5 911 KIHGNVLGLGAIISAFPYVFP---LPPWIPKNLSNLSSWARTSG-MTGNAAKNTISEF 964 (997)
T ss_dssp HHHHHHHHHHHHHTTCSCCSS---CCTHHHHHHHHHHTTSSSCS-SHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCCC---CCcccHHHHHHHHHHhCCCC-chHHHHHHHHHHH
Confidence 567888888888864333210 001233333333 3333 3888888888775
No 149
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=76.06 E-value=2.3 Score=35.05 Aligned_cols=74 Identities=12% Similarity=0.089 Sum_probs=55.4
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~ 144 (402)
+++..+.+.|++.++.++..|+..|-.++..-..+...++....++..|+.++.+..+..++..++..+...+.
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 46778888999999999999999999887653223335566677888888888754447888888877766553
No 150
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=74.75 E-value=10 Score=31.32 Aligned_cols=74 Identities=11% Similarity=0.147 Sum_probs=58.3
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
++..|.+-|.+.++.++..|+.+|-.+..+. +.+...+....+++.|..++....+..++..++..+.......
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 5677778888899999999999888887653 3366777777788888888866677889999888888777654
No 151
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=73.75 E-value=35 Score=27.81 Aligned_cols=134 Identities=7% Similarity=-0.044 Sum_probs=76.6
Q ss_pred cchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 015687 210 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 288 (402)
Q Consensus 210 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L 288 (402)
.++.-+.+..++..+........ ...++.+-.++.+ ++-.+....+.++..+....++. +.+.+
T Consensus 65 ~s~~~E~r~la~~~l~~~~~~~~-------~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~--------~~~~i 129 (220)
T 2b6c_A 65 QKTEREYQYVAIDLALQNVQRFS-------LEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE--------LPTIF 129 (220)
T ss_dssp TSSSHHHHHHHHHHHHHTGGGCC-------HHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG--------HHHHH
T ss_pred cCchhHHHHHHHHHHHHHHhhCC-------HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH--------HHHHH
Confidence 44445555556655554432211 1233333444433 44555555455555554333322 23567
Q ss_pred HHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015687 289 VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 366 (402)
Q Consensus 289 ~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 366 (402)
.....+++.-++..|+-.. +..........+ ++.+-.++.++ +.-|++...|+|..++..+++.+...+.
T Consensus 130 ~~W~~s~~~w~rR~ai~~~--l~~~~~~~~~~~-----~~i~~~~~~d~-~~yV~kavgW~Lr~~~k~~~~~v~~fl~ 199 (220)
T 2b6c_A 130 ALFYGAENFWNRRVALNLQ--LMLKEKTNQDLL-----KKAIIYDRTTE-EFFIQKAIGWSLRQYSKTNPQWVEELMK 199 (220)
T ss_dssp HHHTTCSSHHHHHHHHHTT--TTCGGGCCHHHH-----HHHHHHTTTCC-CHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHH--HHHHHCCCHHHH-----HHHHHHhCCCh-HHHHHHHHHHHHHHHHhhCHHHHHHHHh
Confidence 7888888888877776544 222111122212 34444466777 8899999999999999988887766664
No 152
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=72.49 E-value=9.6 Score=34.29 Aligned_cols=72 Identities=14% Similarity=0.076 Sum_probs=43.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCC
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT 146 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~ 146 (402)
+..|+..+.|+|+..+..--..|..+-.. -...+.++...+-..|.+++.......-..+.+.+++.|..+.
T Consensus 176 i~~Ll~lfdSeDpRERd~LktiLhrIY~K--f~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngf 247 (392)
T 2jak_A 176 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGF 247 (392)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcc
Confidence 55677777788887777777777666432 2344445544455666777655432233445666776666653
No 153
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=71.30 E-value=25 Score=29.46 Aligned_cols=134 Identities=11% Similarity=0.007 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhhcCCCcchHHHHhCCchHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc
Q 015687 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE 210 (402)
Q Consensus 132 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~ 210 (402)
+.-++..++-++.+.+. . +.+..++. .+.+.++..+-.++++++|+.......+..+........++..+..
T Consensus 71 ~fP~lDllRl~~~~~~~-~------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~ 143 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPY-S------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 143 (253)
T ss_dssp CHHHHHHHHHHGGGCSC-G------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHHcCCch-H------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHH
Confidence 44455555555544221 1 23333322 3335577889999999999988776345555443334445554411
Q ss_pred -------chhhHHHHHHHHHHHHhhhCC-C-CCchhhhhchHHHHHHhcc-----CCChhHHHHHHHHHHHhccCC
Q 015687 211 -------HAKLSMLRNATWTLSNFCRGK-P-QPLFEQTRPALPALERLIH-----SNDDEVLTDACWALSYLSDGT 272 (402)
Q Consensus 211 -------~~~~~~~~~a~~~L~~l~~~~-~-~~~~~~~~~~l~~L~~lL~-----~~~~~v~~~a~~~l~~l~~~~ 272 (402)
..+..++..++..+.|++-.. . .........++..+...+. ..|++....++-+++++...+
T Consensus 144 ~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 144 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred HhhhcccCCchhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 236677888888888888653 1 1112222233333333221 237788889999999887533
No 154
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=70.83 E-value=58 Score=29.58 Aligned_cols=131 Identities=12% Similarity=0.035 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhhcCCCcchHHHHhCCchHHHH-HhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhc-
Q 015687 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN- 209 (402)
Q Consensus 132 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~- 209 (402)
+.-++.+|+-++.+.+.. +.+..++ ..+.+..+..+-.++++++|+.......+..+........++..+.
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 566777777776653321 2233333 2344567889999999999998777633444433223455666552
Q ss_pred ------cchhhHHHHHHHHHHHHhhhCC--CCCchhhhhchHHHHHHhcc---------CCChhHHHHHHHHHHHhccCC
Q 015687 210 ------EHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIH---------SNDDEVLTDACWALSYLSDGT 272 (402)
Q Consensus 210 ------~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~L~~lL~---------~~~~~v~~~a~~~l~~l~~~~ 272 (402)
...+..++..++..+.|++... .... ...++.+..++. ..|++....++-+|++|....
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~----~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1235677888888888888653 1111 223344444443 258899999999999998544
Q ss_pred h
Q 015687 273 N 273 (402)
Q Consensus 273 ~ 273 (402)
+
T Consensus 392 ~ 392 (425)
T 3pst_A 392 P 392 (425)
T ss_dssp H
T ss_pred H
Confidence 3
No 155
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=70.76 E-value=60 Score=29.17 Aligned_cols=192 Identities=13% Similarity=0.056 Sum_probs=96.6
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
...++...+..|+.++.++|+.=|+....+|..+-+.-...|..+.+. +-..+.+.+.......=...+++++..+..+
T Consensus 168 k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fiye~e~~~GIaeLLeilgsIIng 246 (392)
T 2jak_A 168 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSIING 246 (392)
T ss_dssp TTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHH-HHHHHHHHHTSSCCCSCHHHHHHHHHHHHHT
T ss_pred hhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccCCCCCHHHHHHHHHHHHhc
Confidence 334455678889999999999999999999988865544455544332 3344555553332222234566666677766
Q ss_pred CCCC-chhhhhchHHHHHHhccCCChh-HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHH
Q 015687 231 KPQP-LFEQTRPALPALERLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308 (402)
Q Consensus 231 ~~~~-~~~~~~~~l~~L~~lL~~~~~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~ 308 (402)
...+ ......-...+|+++.....-. .......++......++..... ++..|+.+==..+..=...-+.-|.
T Consensus 247 fa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~ele 321 (392)
T 2jak_A 247 FALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLNELE 321 (392)
T ss_dssp CCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHSSCSSCCTTHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHH-----HHHHHHHhCCCCCchHHHHHHHHHH
Confidence 5222 2222222344555555444322 1223334443334333333221 1222332221112111223333444
Q ss_pred HhhcCC-hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHH
Q 015687 309 NIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 350 (402)
Q Consensus 309 nl~~~~-~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L 350 (402)
.+.... +.....+. ..++..+.+.+.++ ...|.+.|....
T Consensus 322 eiLe~~~~~~f~~i~-~~lF~~la~ci~S~-hfqVAErAL~~w 362 (392)
T 2jak_A 322 EILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYW 362 (392)
T ss_dssp HHHHTCCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHH-HHHHHHHHHHHcCC-cHHHHHHHHHHh
Confidence 444332 33333232 24566677777777 777777765443
No 156
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=69.49 E-value=8.2 Score=31.70 Aligned_cols=74 Identities=7% Similarity=0.082 Sum_probs=56.5
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
++..|.+-|.+.++.++..|+.+|-.+..+. +.++..+.+..+++.|+.++....+..++..++..+.......
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 117 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAF 117 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Confidence 4666777778889999999999999888764 4466777777788888888865667788888877776666543
No 157
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=68.20 E-value=42 Score=28.96 Aligned_cols=100 Identities=13% Similarity=0.109 Sum_probs=65.0
Q ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHh--cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--cCCHHH
Q 015687 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL--TQNYKKSIKKEACWTISNITAGNVNQIQAIIE--AGIIGP 372 (402)
Q Consensus 297 ~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll--~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~ 372 (402)
......|+..|--++..-....+ ++++. .+.|..++ ... .+.+++.|+.+++.....+|..+..+.+ .+.+..
T Consensus 42 ~~~le~aLD~L~ElSHDi~~G~K-I~~~e-f~lL~nL~~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~ 118 (315)
T 3qml_C 42 IARLEDSFDRIMEFAHDYKHGYK-IITHE-FALLANLSLNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSK 118 (315)
T ss_dssp HHHHHHHHHHHGGGTTSHHHHHH-HHHHH-HHHHHHHHHCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHhhhH-HHhCc-HHHHHHHHhhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHH
Confidence 34556777777777764443333 33321 33344433 333 6789999999999999999999998886 455666
Q ss_pred HHHHhcc-------CCHHHHHHHHHHHHHhhcCC
Q 015687 373 LVNLLLN-------AEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 373 L~~ll~~-------~~~~v~~~a~~aL~nl~~~~ 399 (402)
++.-|.. ...-+++.-+.+|.-|+...
T Consensus 119 lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~ 152 (315)
T 3qml_C 119 IMAALSNLNDSNHRSSNILIKRYLSILNELPVTS 152 (315)
T ss_dssp HHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh
Confidence 6655543 23456777777777776653
No 158
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=65.45 E-value=4.8 Score=33.93 Aligned_cols=103 Identities=9% Similarity=0.070 Sum_probs=62.6
Q ss_pred CCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC-------CchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015687 294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-------YKKSIKKEACWTISNITAGNVNQIQAIIE 366 (402)
Q Consensus 294 ~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 366 (402)
+..+..+.-++++++|+..+.....+.+.+....+.++..+.+. .+..++-.++..+.|++........ +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 44667889999999999886662333333322333444443221 1557888888899999862100000 1
Q ss_pred cCCHHHHHHHhcc---------CCHHHHHHHHHHHHHhhcCC
Q 015687 367 AGIIGPLVNLLLN---------AEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 367 ~~~i~~L~~ll~~---------~~~~v~~~a~~aL~nl~~~~ 399 (402)
......+++.+.. .+++....++-||+++...+
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 2233445555542 37789999999999998643
No 159
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=65.34 E-value=65 Score=28.57 Aligned_cols=131 Identities=12% Similarity=0.036 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhhcCCCcchHHHHhCCchHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhc-
Q 015687 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN- 209 (402)
Q Consensus 132 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~- 209 (402)
+.-++.+++-++.+.+. . +.+..++. .+.+..+..+-.++++++|+.......+..+........++..+.
T Consensus 180 ~FP~LDLLRl~v~~~~~-~------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPY-S------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSC-G------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCCh-H------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 56677788777765332 1 23333333 344567889999999999998777633444432212344454441
Q ss_pred ------cchhhHHHHHHHHHHHHhhhCC--CCCchhhhhchHHHHHHhcc---------CCChhHHHHHHHHHHHhccCC
Q 015687 210 ------EHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIH---------SNDDEVLTDACWALSYLSDGT 272 (402)
Q Consensus 210 ------~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~L~~lL~---------~~~~~v~~~a~~~l~~l~~~~ 272 (402)
...+..++..++..+.|++... .... ....+.+..++. ..|++....++-++++|....
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~----~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1235677888888888888653 1111 223344455444 358899999999999998543
Q ss_pred h
Q 015687 273 N 273 (402)
Q Consensus 273 ~ 273 (402)
+
T Consensus 329 ~ 329 (362)
T 3l3f_X 329 P 329 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 160
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=63.53 E-value=38 Score=25.70 Aligned_cols=70 Identities=9% Similarity=0.033 Sum_probs=51.6
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCC-cchHHHHhCCchHHHHHhhCC------CCHHHHHHHHHHHHHhh
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS-ENTRVVIDHGAVPIFVRLLSS------PTDDVREQAVWALGNVA 185 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~lL~~------~~~~v~~~a~~~L~nl~ 185 (402)
++..+.+-|.+.+ +.++..|+.+|-.+..... .+...+.+...+..|+.++.. .+..|++.++..+..-+
T Consensus 49 a~ral~krl~~~n-~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 49 ATRLLAHKIQSPQ-EWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 3667777777777 8999999998888776432 334555566678888888863 57889998888887765
No 161
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=60.94 E-value=14 Score=28.37 Aligned_cols=74 Identities=9% Similarity=-0.032 Sum_probs=52.5
Q ss_pred ccHHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHH-HHHhhcCC--CCHHHHHHHHHHHHHhhc
Q 015687 71 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPR-FIEFLSRD--DFPQLQFEAAWALTNIAS 144 (402)
Q Consensus 71 ~~i~~l~~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~-L~~lL~~~--~~~~~~~~a~~~L~~l~~ 144 (402)
+++..+.+.|+ +.++..+..|+..|-.++..-......++....++.. |++++... ....++..++..+...+.
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 46778888887 4789999999999988876542333445667778887 78888532 225788888877766553
No 162
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=60.21 E-value=16 Score=33.22 Aligned_cols=103 Identities=9% Similarity=0.064 Sum_probs=64.6
Q ss_pred CCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC-------CchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 015687 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-------YKKSIKKEACWTISNITAGNVNQIQAII 365 (402)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 365 (402)
....+..+.-+++++.|+........+.+.+....+.++..+... .+..++..++..+.|++....... .
T Consensus 272 ~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~---~ 348 (425)
T 3pst_A 272 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---S 348 (425)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC---S
T ss_pred CCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---c
Confidence 345678888999999999876552333332222345556555322 145688888888889986311100 0
Q ss_pred HcCCHHHHHHHhc---------cCCHHHHHHHHHHHHHhhcC
Q 015687 366 EAGIIGPLVNLLL---------NAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 366 ~~~~i~~L~~ll~---------~~~~~v~~~a~~aL~nl~~~ 398 (402)
+..+...+.+++. ..+++....++-||++|+..
T Consensus 349 ~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~ 390 (425)
T 3pst_A 349 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 390 (425)
T ss_dssp CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 1223455666665 35889999999999999853
No 163
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=60.15 E-value=46 Score=24.88 Aligned_cols=94 Identities=7% Similarity=0.062 Sum_probs=57.9
Q ss_pred CCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHH
Q 015687 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN-VNQIQAIIEAGIIG 371 (402)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~ 371 (402)
..+++......|..+.. .+.... .++..|.+-|.+. ++.++..|.-.|-.+...+ +.....+.+...+.
T Consensus 19 ~~~dw~~ileicD~I~~----~~~~~k-----~a~rai~Krl~~~-n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~ 88 (140)
T 3ldz_A 19 TAEDWGLILDICDKVGQ----SRTGPK-----DCLRSIMRRVNHK-DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFAS 88 (140)
T ss_dssp SSCCHHHHHHHHHHHTT----STTHHH-----HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHH
T ss_pred CCcCHHHHHHHHHHHHC----CCcCHH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH
Confidence 34555555555555432 222222 2344677778888 8888888776666666533 33333444555777
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhh
Q 015687 372 PLVNLLLNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 372 ~L~~ll~~~~~~v~~~a~~aL~nl~ 396 (402)
.|+.++...++.|+..++..+..-+
T Consensus 89 el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 89 EVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHH
Confidence 7888887788899988877776543
No 164
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=58.17 E-value=11 Score=33.41 Aligned_cols=103 Identities=9% Similarity=0.064 Sum_probs=63.1
Q ss_pred CCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC-------CchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 015687 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-------YKKSIKKEACWTISNITAGNVNQIQAII 365 (402)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 365 (402)
....+..+.-++|++.|+..+.....+.+.+....+.+...+... .+..++..++..+.|++....... .
T Consensus 209 ~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~---~ 285 (362)
T 3l3f_X 209 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---S 285 (362)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC---S
T ss_pred CCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---c
Confidence 345678888999999999876652333232211233344443211 145688888888889986311100 0
Q ss_pred HcCCHHHHHHHhc---------cCCHHHHHHHHHHHHHhhcC
Q 015687 366 EAGIIGPLVNLLL---------NAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 366 ~~~~i~~L~~ll~---------~~~~~v~~~a~~aL~nl~~~ 398 (402)
+..+...+.+++. ..+++....++-||++|+..
T Consensus 286 ~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 286 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 1223455666665 35889999999999999853
No 165
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=58.11 E-value=46 Score=26.61 Aligned_cols=113 Identities=14% Similarity=0.107 Sum_probs=69.6
Q ss_pred CchHHHHHhhCC------CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccc--hhhHHHHHHHHHHHHhh
Q 015687 157 GAVPIFVRLLSS------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH--AKLSMLRNATWTLSNFC 228 (402)
Q Consensus 157 g~i~~L~~lL~~------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~--~~~~~~~~a~~~L~~l~ 228 (402)
..+|.++.++.+ .+.......+.....|..+..-.-+ ..-+..+|+++.++-.. ....++..|+..+..+|
T Consensus 40 ~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~le-pYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~ 118 (196)
T 4atg_A 40 QLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFID-PYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIY 118 (196)
T ss_dssp TTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCG-GGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence 367777776643 3555555666666666554331111 11122577777776321 12279999999999999
Q ss_pred hCCCCCchhhhhchHHHHHHhccCC--ChhHHHHHHHHHHHhcc
Q 015687 229 RGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSD 270 (402)
Q Consensus 229 ~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l~~l~~ 270 (402)
+............+...+.+.+.++ +.....-|+..|..+..
T Consensus 119 ~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 119 DTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK 162 (196)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH
T ss_pred HHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH
Confidence 8864433334466777777777554 46677788888877753
No 166
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=57.75 E-value=78 Score=25.96 Aligned_cols=77 Identities=9% Similarity=0.109 Sum_probs=53.0
Q ss_pred cHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 015687 284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA 363 (402)
Q Consensus 284 ~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 363 (402)
..+.+.....+++.-++..|+-.+ +......... ..++.+...+.++ +.-|++...|+|..++..+++.+..
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~--l~~~~~~d~~-----~~~~~i~~~~~d~-~~yV~kAvgW~Lr~~~k~~p~~v~~ 203 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQ--LKYKQKMDEE-----LLFWIIGQLHSSK-EFFIQKAIGWVLREYAKTNPDVVWE 203 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTT--TTCGGGCCHH-----HHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHH--HHHHhCCCHH-----HHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 446677888888887777776544 2221111111 1234555667777 8899999999999999999998888
Q ss_pred HHHcC
Q 015687 364 IIEAG 368 (402)
Q Consensus 364 l~~~~ 368 (402)
.++.+
T Consensus 204 fl~~~ 208 (232)
T 3jxy_A 204 YVQNN 208 (232)
T ss_dssp HHHHS
T ss_pred HHHHC
Confidence 77653
No 167
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=55.47 E-value=35 Score=25.87 Aligned_cols=73 Identities=15% Similarity=0.055 Sum_probs=56.1
Q ss_pred hchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHH-HHHHHhCcHHHHHHhcCC------CChhhHHHHHHHHHHhhc
Q 015687 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI-QAVIEAGVCPRLVELLRH------PSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 240 ~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~-~~~~~~~~i~~L~~~L~~------~~~~v~~~a~~~l~nl~~ 312 (402)
..++..|.+-|.+.++.++..|+..|-.+..+..... ..+.+..++..|+.++.. .+..|+..++..|...+.
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5667788888899999999999999988886654444 445556788889988863 367889888888877654
No 168
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B
Probab=55.10 E-value=2.7 Score=36.86 Aligned_cols=44 Identities=27% Similarity=0.366 Sum_probs=28.8
Q ss_pred ccHHHhhhccCCCCchHHhhhhHHHHHHHHHHhhhHHHHhhhhcc
Q 015687 8 RTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREG 52 (402)
Q Consensus 8 ~~~~~~~~~k~~~~~~~~r~~r~~~~~~lRk~~r~~~~~~kr~~~ 52 (402)
...+|...||+.....+..+ |++...+..|++|.+.++..|++.
T Consensus 28 a~HPR~sqyK~k~~~~~Q~~-RR~~~Le~QK~kR~d~~~haR~La 71 (365)
T 3gjx_B 28 APHPRLSQYKSKYSSLEQSE-RRRRLLELQKSKRLDYVNHARRLA 71 (365)
T ss_dssp SCCGGGCC---CTTCCSCCH-HHHHHHHHTCCCCSCHHHHHHHHH
T ss_pred CCCcchhhcccccchhhHHH-HHHHHHHHHHHHHHHHHHHhcccc
Confidence 45689999998333333333 445667888999999999999864
No 169
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=52.36 E-value=30 Score=26.99 Aligned_cols=73 Identities=14% Similarity=0.056 Sum_probs=56.4
Q ss_pred hchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHH-HHHHhCcHHHHHHhcCC------CChhhHHHHHHHHHHhhc
Q 015687 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLRH------PSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 240 ~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~i~~L~~~L~~------~~~~v~~~a~~~l~nl~~ 312 (402)
..++..|.+-|.+.++.++..|+..|-.+..+.....+ .+.+..+++.|+.++.. .+..|+..++..|.....
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 56677888888999999999999999888877655444 45555788888888852 356888888888877664
No 170
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=49.98 E-value=1e+02 Score=24.98 Aligned_cols=141 Identities=9% Similarity=-0.044 Sum_probs=88.0
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhhHHH
Q 015687 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLV 195 (402)
Q Consensus 117 ~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 195 (402)
..+..+..++. -+.+..|+.++........+ ..++.+-.++. -.+-.+.+..+.+++.+....+..
T Consensus 58 ~~~~~L~~s~~-~E~r~la~~~l~~~~~~~~~--------~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~---- 124 (220)
T 2b6c_A 58 QEIEAYYQKTE-REYQYVAIDLALQNVQRFSL--------EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE---- 124 (220)
T ss_dssp HHHHHHHTSSS-HHHHHHHHHHHHHTGGGCCH--------HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG----
T ss_pred HHHHHHHcCch-hHHHHHHHHHHHHHHhhCCH--------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH----
Confidence 34455566555 78899999888876432111 12333333444 367788887777777776544421
Q ss_pred HhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHH
Q 015687 196 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK 275 (402)
Q Consensus 196 ~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~ 275 (402)
..+.+.... .+++.=+++.++.++..... .......++.+..++.+++.-|+..+.|+|..++...++.
T Consensus 125 ----~~~~i~~W~-~s~~~w~rR~ai~~~l~~~~------~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~ 193 (220)
T 2b6c_A 125 ----LPTIFALFY-GAENFWNRRVALNLQLMLKE------KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQW 193 (220)
T ss_dssp ----HHHHHHHHT-TCSSHHHHHHHHHTTTTCGG------GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHH
T ss_pred ----HHHHHHHHH-cCCCHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHH
Confidence 123344444 77788888888775532211 1122445666666888889999999999999999888776
Q ss_pred HHHHHH
Q 015687 276 IQAVIE 281 (402)
Q Consensus 276 ~~~~~~ 281 (402)
...++.
T Consensus 194 v~~fl~ 199 (220)
T 2b6c_A 194 VEELMK 199 (220)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555553
No 171
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=49.72 E-value=1.1e+02 Score=25.51 Aligned_cols=69 Identities=19% Similarity=0.200 Sum_probs=49.4
Q ss_pred hhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 015687 238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (402)
Q Consensus 238 ~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~ 311 (402)
....+++.++++-.+.+.+++......+...+....+.. ..+++.|..++.++++.+.+.++.+.+++-
T Consensus 50 ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~-----~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY 118 (257)
T 3gs3_A 50 LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL-----PHVINVVSMLLRDNSAQVIKRVIQACGSIY 118 (257)
T ss_dssp GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 557778888887777788888888888877774433322 234677778888888888888877777663
No 172
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=49.62 E-value=1.6e+02 Score=27.21 Aligned_cols=128 Identities=15% Similarity=0.156 Sum_probs=81.9
Q ss_pred HHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCC
Q 015687 91 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT 170 (402)
Q Consensus 91 a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~ 170 (402)
.+..+.++++. -+.+.+.+-=-+..++.-|.++. +.+...|+.++. .++-...+...+++..++.++-+++
T Consensus 96 Li~Ll~~il~~---~~Fd~VLevysve~i~~aL~S~~-~~l~~~~ckVI~-----~s~pk~lfa~t~iidiLL~lyFd~~ 166 (500)
T 3vld_A 96 LLDVVDKLVPM---ADFDDVLEVYSAEDLVKALRSEI-DPLKVAACRVIE-----NSQPKGLFATSNIIDILLDILFDEK 166 (500)
T ss_dssp HHHHHHHHHHH---SCHHHHHHHSCHHHHHHHHTSSC-HHHHHHHHHHHH-----TCSSGGGGTTSSHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhc---CCHHHHHHhCCHHHHHHHHhcCC-hHHHHHHHHHhc-----ccCchhHhccChHHHHHHHHHcCCC
Confidence 34445555442 23445555445888999999987 899999998887 2556677888899999999887643
Q ss_pred H--H-HHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 171 D--D-VREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 171 ~--~-v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
. . +....=.++..++.+ .-+|..+.+. .. +++..++...++.+.......+.-+...
T Consensus 167 t~i~~vvn~IE~~~~~Lssd-eLirrril~n-nl-~lL~~vK~~~~~i~~sRLLdll~il~~~ 226 (500)
T 3vld_A 167 VENDKLITAIEKALERLSTD-ELIRRRLFDN-NL-PYLVSVKGRMETVSFVRLIDFLTIEFQF 226 (500)
T ss_dssp CCCHHHHHHHHHHHHHHTTS-HHHHHHHHTT-TH-HHHHHHHHHCCHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHcCch-HHHHHHHHHH-hH-HHHHHHhcCCCceeHHHHHHHHHHHhcc
Confidence 3 3 776777777777644 3245666653 44 4444443445555555556555555444
No 173
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=45.87 E-value=37 Score=26.02 Aligned_cols=73 Identities=10% Similarity=0.033 Sum_probs=51.7
Q ss_pred chHHHHHhhC-CCCHHHHHHHHHHHHHhhCCC-chhhHHHHhcCChHH-HHHHhcc--chhhHHHHHHHHHHHHhhhC
Q 015687 158 AVPIFVRLLS-SPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMP-LLAQFNE--HAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 158 ~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~-L~~~l~~--~~~~~~~~~a~~~L~~l~~~ 230 (402)
++..|.+-|. +.++.++-.|+..|-.+..++ +.++..+.+..+++. |+.++.. .++..++..+...+......
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 4566677776 478888888998888887664 567777777778887 7787743 23457777777776666554
No 174
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=43.09 E-value=2.9e+02 Score=29.31 Aligned_cols=260 Identities=10% Similarity=0.013 Sum_probs=0.0
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHH
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (402)
+...+.+++.-.. ..+|.+.+..|=.|..++... .++..|..+|.. ++.+.-..+.+|+||.-+.....+.
T Consensus 158 l~~ki~~vl~vap-~~lQ~diI~sLPeIl~ds~H~-------~v~~~L~~lL~~-~~~L~~~iLdaLs~L~Ls~~~l~~v 228 (1323)
T 3s4w_B 158 LTAQMMQLISVAP-VNLQHDFITSLPEILGDSQHA-------NVGKELGELLVQ-NTSLTVPILDVFSSLRLDPNFLSKI 228 (1323)
T ss_dssp HHHHHHHHHHHSC-TTTHHHHHHTHHHHSCGGGHH-------HHHHHHHHHHHH-CSTTHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHHhCc-HHHHHHHHHHhHHHhcchhhH-------HHHHHHHHHHhc-CcchHHHHHHHHHcCCCCHHHHHHH
Q ss_pred HH---------hcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC-----------------------CCchhhhhch
Q 015687 195 VL---------SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-----------------------QPLFEQTRPA 242 (402)
Q Consensus 195 ~~---------~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~-----------------------~~~~~~~~~~ 242 (402)
.. ....+|.+++.+.+..+.+-...+...+..-..... .........+
T Consensus 229 r~~vl~~L~s~~~e~LP~lIkFLL~s~t~~~~~evI~~LR~~L~~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~~s~~~~ 308 (1323)
T 3s4w_B 229 RQLVMGKLSSVRLEDFPVIVKFLLHSVTDTTSLEVIAELRENLNVQQFILPSRIQASQSKLKSKGLASSSGNQENSDKDC 308 (1323)
T ss_dssp HHHHHHSTTSSCTTHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHCC----------------------------CHHHHH
T ss_pred HHHHHHHhccCChhhhHHHHHHHHHhCCHhhHHHHHHHHHHHcCccccccchhhhhhhhhhhccccccCCccccccccch
Q ss_pred HHHHHHhccCC---ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-CCCChhhHHHHHHHHHHhhcCChHHH
Q 015687 243 LPALERLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQT 318 (402)
Q Consensus 243 l~~L~~lL~~~---~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L-~~~~~~v~~~a~~~l~nl~~~~~~~~ 318 (402)
.-.++..+++. ...+...-+..+.++....+ ..+++.++-++ .+.+...+..+-.++.+-+....-..
T Consensus 309 ~~lild~lks~l~~~k~i~eAwlK~I~~~~~~~~--------hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~ 380 (1323)
T 3s4w_B 309 IVLVFDVIKSAIRYEKTISEAWFKAIERIESAAE--------HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQE 380 (1323)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHGGGSTT--------CCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCH
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhCCCcccc--------cchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchH
Q ss_pred HHHHh-------------CCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHH
Q 015687 319 QCIIN-------------HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 385 (402)
Q Consensus 319 ~~i~~-------------~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 385 (402)
+.+.. ..++...-.++.+. ++.++..+...-..+.....+ .....++..|+....++...=.
T Consensus 381 ~ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~-~~~v~~Fg~~lY~~lF~~fd~----~~qqeVl~~Lv~hi~sg~~~eV 455 (1323)
T 3s4w_B 381 QLLDSAFSTHYLVLKDICPSILLLAQTLFHSQ-DQRIILFGSLLYKYAFKFFDT----YCQQEVVGALVTHVCSGTEAEV 455 (1323)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHHSSCH----HHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHhhhcCCCcHHH
Q ss_pred HHHHHHHHHhh
Q 015687 386 KEAAWAISNAT 396 (402)
Q Consensus 386 ~~a~~aL~nl~ 396 (402)
..|+.+|..++
T Consensus 456 d~ALdvL~~L~ 466 (1323)
T 3s4w_B 456 DTALDVLLELI 466 (1323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
No 175
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=42.66 E-value=61 Score=24.26 Aligned_cols=92 Identities=13% Similarity=0.134 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHhhcCChHH-HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHH
Q 015687 298 SVLIPALRTVGNIVTGDDMQ-TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVN 375 (402)
Q Consensus 298 ~v~~~a~~~l~nl~~~~~~~-~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ 375 (402)
..-...+.=|++++..++.. .. .+++.|.+-|.+. ++.++-.|..+|-.|+. |++..+..+.++ . ..++
T Consensus 26 ~~pgylm~EIA~~T~~s~~~~~~-----eim~~L~kRL~~k-~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~-~--~~Ik 96 (140)
T 1vdy_A 26 VAPVYKLEEICDLLRSSHVSIVK-----EFSEFILKRLDNK-SPIVKQKALRLIKYAVGKSGSEFRREMQRN-S--VAVR 96 (140)
T ss_dssp CCCHHHHHHHHHHHHHSCHHHHH-----HHHHHHHHHHTSS-SHHHHHHHHHHHHHHTTTSCHHHHHHHHHT-T--HHHH
T ss_pred CCcHHHHHHHHHHHHhcchhHHH-----HHHHHHHHHhcCC-CcceeehHHHHHHHHHHhCCHHHHHHHHHh-H--HHHH
Confidence 33344455566666554322 23 3456888999888 88999999999999997 677777777654 2 2344
Q ss_pred Hhcc----CC--------HHHHHHHHHHHHHhhcC
Q 015687 376 LLLN----AE--------FEIKKEAAWAISNATSG 398 (402)
Q Consensus 376 ll~~----~~--------~~v~~~a~~aL~nl~~~ 398 (402)
.+.+ ++ ..||..|-.++.-|...
T Consensus 97 ~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~ 131 (140)
T 1vdy_A 97 NLFHYKGHPDPLKGDALNKAVRETAHETISAIFSE 131 (140)
T ss_dssp TTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHhcCCCCCcccccchhHHHHHHHHHHHHHHhCc
Confidence 4432 22 35888888777766543
No 176
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=41.92 E-value=1.4e+02 Score=24.34 Aligned_cols=141 Identities=13% Similarity=0.107 Sum_probs=85.2
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhC-CCCHHHHHHHH-HHHHHhhCCCchhhHHH
Q 015687 118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAV-WALGNVAGDSPKCRDLV 195 (402)
Q Consensus 118 ~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~-~~L~nl~~~~~~~~~~~ 195 (402)
.+-.+..++. .+.+..|+..+........+ ..++.+-.++. ..+-.+.+..+ .+++.+....|..
T Consensus 65 ~~~~L~~~~~-~E~r~~ai~~l~~~~k~~~~--------~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~~---- 131 (232)
T 3jxy_A 65 IIRELWDLPE-REFQAAALDIMQKYKKHINE--------THIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPEL---- 131 (232)
T ss_dssp HHHHHHTSSB-HHHHHHHHHHHHHTGGGCCG--------GGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGGG----
T ss_pred HHHHHhcCcH-HHHHHHHHHHHHHHHHhCCH--------HHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHHH----
Confidence 4455666655 78888888888654321111 12333344443 35677766553 5566665444421
Q ss_pred HhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHH
Q 015687 196 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK 275 (402)
Q Consensus 196 ~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~ 275 (402)
..+.+.... .+++.-+++.++..+..... . ......++.+..++.+++.-|+..+.|+|..++...++.
T Consensus 132 ----~~~~l~~W~-~s~~~w~rR~ai~~~l~~~~---~---~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~ 200 (232)
T 3jxy_A 132 ----ISAYIPKWI-ASDNIWLQRAAILFQLKYKQ---K---MDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDV 200 (232)
T ss_dssp ----GGGTHHHHH-HSSCHHHHHHHHHTTTTCGG---G---CCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHH
T ss_pred ----HHHHHHHHh-cCCchHHHHHHHHHHHHHHh---C---CCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHH
Confidence 233444555 67777788888765422211 1 111345566777788889999999999999999888877
Q ss_pred HHHHHHh
Q 015687 276 IQAVIEA 282 (402)
Q Consensus 276 ~~~~~~~ 282 (402)
...+++.
T Consensus 201 v~~fl~~ 207 (232)
T 3jxy_A 201 VWEYVQN 207 (232)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6656554
No 177
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=39.37 E-value=1.6e+02 Score=29.48 Aligned_cols=117 Identities=9% Similarity=0.064 Sum_probs=69.3
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc--chhhHHHHHHHHHHHHhh
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--HAKLSMLRNATWTLSNFC 228 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~--~~~~~~~~~a~~~L~~l~ 228 (402)
..+++ -..|.+...+.+.+..+...+..+|.+||.-.|.+++.++. ++++.+..-|.. -..+.-...++.+|..++
T Consensus 334 ~~fV~-~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP-~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~ 411 (799)
T 1vsy_4 334 EEIVE-IFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYD-KILIDLYDTLADQFINSRHRIISSLKQFTRVI 411 (799)
T ss_dssp HHHHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHH-HHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTH
T ss_pred HHHHH-HHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehH-HHHHHHHHHhccccccchhHHHHHHHHHHHHH
Confidence 33443 24566666678899999999999999999877755455432 234444444422 234444555566666655
Q ss_pred hCCC--CCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhc
Q 015687 229 RGKP--QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (402)
Q Consensus 229 ~~~~--~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~ 269 (402)
+.-. ..-...+..++..+++-+..+|+.-...++..+..++
T Consensus 412 r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~ 454 (799)
T 1vsy_4 412 RFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIA 454 (799)
T ss_dssp HHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHH
Confidence 4321 1112233455566666667778876666666666553
No 178
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=34.76 E-value=69 Score=26.36 Aligned_cols=76 Identities=9% Similarity=0.073 Sum_probs=52.2
Q ss_pred HHHHHHhcCCCChhhHHHHHH----HHHHhhcC--ChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH
Q 015687 285 CPRLVELLRHPSPSVLIPALR----TVGNIVTG--DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358 (402)
Q Consensus 285 i~~L~~~L~~~~~~v~~~a~~----~l~nl~~~--~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 358 (402)
.+.+...+.+++.-.+..+.. .+..+... .+.... .+++.+...+.++ +.-|++...|+|..+...++
T Consensus 110 ~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~-----~~l~~i~~~l~~~-~~~v~kAi~W~Lr~~gk~~~ 183 (235)
T 1t06_A 110 QDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKIS-----DMLEMVKDTIHHS-PERTKSAMNNFLNTVAISYV 183 (235)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHH-----HHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHH-----HHHHHHHHHccCC-hHHHHHHHHHHHHHHHhhCH
Confidence 355677778888878877777 44552211 223333 2345566678888 89999999999999998777
Q ss_pred HHHHHHHH
Q 015687 359 NQIQAIIE 366 (402)
Q Consensus 359 ~~~~~l~~ 366 (402)
+.....++
T Consensus 184 ~~~~~al~ 191 (235)
T 1t06_A 184 PLHEKAVE 191 (235)
T ss_dssp GGHHHHHH
T ss_pred HHHHHHHH
Confidence 76666554
No 179
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=34.01 E-value=37 Score=19.79 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=13.7
Q ss_pred HHhhhhHHHHHHHHHHhhh
Q 015687 24 EGRRRREDNMVEIRKNKRE 42 (402)
Q Consensus 24 ~~r~~r~~~~~~lRk~~r~ 42 (402)
+.|++.++....+||.++.
T Consensus 11 ~~Rkk~eeler~lrk~kk~ 29 (50)
T 1a92_A 11 SGRKKLEELERDLRKLKKK 29 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4577778888888877654
No 180
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=30.78 E-value=1.7e+02 Score=21.89 Aligned_cols=65 Identities=6% Similarity=0.017 Sum_probs=45.5
Q ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHH
Q 015687 327 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 392 (402)
Q Consensus 327 l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 392 (402)
+..+.+.+... .|.-|-.+.+++-.|+.............++.+.+.+.....+.+++......+
T Consensus 45 v~~i~~~i~k~-~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~ 109 (144)
T 1sz9_A 45 VDAIESRIEKC-MPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMF 109 (144)
T ss_dssp HHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHhccC-CHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34566666666 788888999999999873222235666777888888888777777776655544
No 181
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=30.75 E-value=1.3e+02 Score=22.56 Aligned_cols=88 Identities=8% Similarity=-0.036 Sum_probs=54.6
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHH
Q 015687 253 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD 332 (402)
Q Consensus 253 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ 332 (402)
+-+.|..-..|++.+.- ... .++..+...+....+.-+.++++.+-.++..........+..++.+.+..
T Consensus 23 Sk~~I~~LT~~a~~~~~-----~a~-----~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~ 92 (144)
T 1sz9_A 23 SRPIITTLTKLAEENIS-----CAQ-----YFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKR 92 (144)
T ss_dssp CHHHHHHHHHHHHHTGG-----GHH-----HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHH-----HHH-----HHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 33455555556665532 111 23455556666677888889999998888754333344666677777777
Q ss_pred HhcCCCchhHHHHHHHHHH
Q 015687 333 LLTQNYKKSIKKEACWTIS 351 (402)
Q Consensus 333 ll~~~~~~~v~~~a~~~L~ 351 (402)
..... ++.+|.....++.
T Consensus 93 ~~~~~-d~~~r~k~~rL~~ 110 (144)
T 1sz9_A 93 TYLLV-DNTTRTKLINMFK 110 (144)
T ss_dssp HHHTS-CHHHHHHHHHHHH
T ss_pred HHHhC-CHHHHHHHHHHHH
Confidence 77666 6667766555444
No 182
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=30.20 E-value=3.3e+02 Score=25.17 Aligned_cols=188 Identities=15% Similarity=0.165 Sum_probs=107.9
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCH-H-HHHHHHHHHHHhhcCCCc-
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFP-Q-LQFEAAWALTNIASGTSE- 148 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~-~-~~~~a~~~L~~l~~~~~~- 148 (402)
.++.+++.|+|+++.+...++..+. ...|...+...+++..+++++-..+.+ . +....=.++..+++ .+
T Consensus 117 sve~i~~aL~S~~~~l~~~~ckVI~------~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Lss--deL 188 (500)
T 3vld_A 117 SAEDLVKALRSEIDPLKVAACRVIE------NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLST--DEL 188 (500)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHH------TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTT--SHH
T ss_pred CHHHHHHHHhcCChHHHHHHHHHhc------ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCc--hHH
Confidence 4678899999999988888888776 257788888999999999998776522 3 55555566666764 34
Q ss_pred chHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCC--CchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHH
Q 015687 149 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD--SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (402)
Q Consensus 149 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~--~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~ 226 (402)
.+..+.+ ...|.|...=++.++.+....+..+.-+... .++++..+.-.+. ..+.+.+ + |+-+.-..+....+
T Consensus 189 irrril~-nnl~lL~~vK~~~~~i~~sRLLdll~il~~~i~~~eF~~~Lfi~~~-~Ei~k~~-d--Dil~fI~ii~yYtk 263 (500)
T 3vld_A 189 IRRRLFD-NNLPYLVSVKGRMETVSFVRLIDFLTIEFQFISGPEFKDIIFCFTK-EEILKSV-E--DILVFIELVNYYTK 263 (500)
T ss_dssp HHHHHHT-TTHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCCTTTCCHHHHCCCH-HHHHHHT-T--SHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhHHHHHHHhcCCCceeHHHHHHHHHHHhcccCcccCCcceeeccH-HHHHhhh-c--chHHHHHHHHHHHH
Confidence 3455555 4567777666566776665555555544322 3445544432211 1112222 1 32222222222222
Q ss_pred hhhCC--CCCc--hhhhhchHHHHHHhccC--CChhHHH----HHHHHHHHhccCC
Q 015687 227 FCRGK--PQPL--FEQTRPALPALERLIHS--NDDEVLT----DACWALSYLSDGT 272 (402)
Q Consensus 227 l~~~~--~~~~--~~~~~~~l~~L~~lL~~--~~~~v~~----~a~~~l~~l~~~~ 272 (402)
|.... .... ...+.+.++.+.++... .++++.. ..+..++.++..+
T Consensus 264 Ll~~~~~~~~~w~l~~i~p~l~~~~~ly~~~d~~~dv~~f~~s~l~~lfa~lSyl~ 319 (500)
T 3vld_A 264 FLLEIRNQDKYWALRHVKKILPVFAQLFEDTENYPDVRAFSTNCLLQLFAEVSRIE 319 (500)
T ss_dssp HHHHHHHTTCGGGHHHHGGGHHHHHHHHHCTTTCHHHHHHSHHHHHHHHHHHTTSS
T ss_pred HHHHhcccchHHHHHHhHHHHHHHHHHhcCchhhhHHHHHhHHHHHHHHHHHhhcc
Confidence 22110 1222 23557788888888854 4556543 4455555565433
No 183
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=29.88 E-value=47 Score=25.27 Aligned_cols=75 Identities=7% Similarity=0.005 Sum_probs=48.8
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHH-HHHhhcCC--CCHHHHHHHHHHHHHhhcC
Q 015687 71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPR-FIEFLSRD--DFPQLQFEAAWALTNIASG 145 (402)
Q Consensus 71 ~~i~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~-L~~lL~~~--~~~~~~~~a~~~L~~l~~~ 145 (402)
+++..+.+.|++ .++..+..|+..|-.++..-..+...++....++.. |++++... ....++..++..+...+..
T Consensus 53 eA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 53 DAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 456777778874 577788888888877765432233344545556653 66776532 2257888888888887753
No 184
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=26.71 E-value=4.2e+02 Score=26.43 Aligned_cols=100 Identities=9% Similarity=0.045 Sum_probs=66.1
Q ss_pred cchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccC---CChhHHHHHHHHHHHhcc----CChHHHHHHHHh
Q 015687 210 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS---NDDEVLTDACWALSYLSD----GTNDKIQAVIEA 282 (402)
Q Consensus 210 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~---~~~~v~~~a~~~l~~l~~----~~~~~~~~~~~~ 282 (402)
.+.+..+...+..++.+|+.-.|........+++..+...|.. ..+.-...++.++..++. ..... ..+.
T Consensus 349 fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~~yr-~hl~-- 425 (799)
T 1vsy_4 349 QNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDKLYR-VHIT-- 425 (799)
T ss_dssp TCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTSTTGG-GHHH--
T ss_pred CcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCcccH-HHHH--
Confidence 6778888999999999999987766667777788877777766 455556666676665542 21111 1111
Q ss_pred CcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 015687 283 GVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 283 ~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
.++..+++-++.+|+.-...++..+..++.
T Consensus 426 ~lL~l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 426 NVLSMLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp HHHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 244555555667776666667777777754
No 185
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=24.40 E-value=54 Score=24.05 Aligned_cols=62 Identities=6% Similarity=0.157 Sum_probs=40.7
Q ss_pred hHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 015687 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 313 (402)
Q Consensus 242 ~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~ 313 (402)
.+...+.-|..+.+.|...+.|++.+.-. . .. +++.+.+.+....+.-+.+.++.+..++..
T Consensus 9 ~l~~~L~~L~~s~~sI~~~s~w~l~h~~~-a----~~-----Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~n 70 (132)
T 4flb_A 9 SLDRKFQSVTNTMESIQGLSSWCIENKKH-H----ST-----IVYHWMKWLRRSAYPHRLNLFYLANDVIQN 70 (132)
T ss_dssp HHHHHHHHCCSSHHHHHHHHHHHHHTGGG-H----HH-----HHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcccHHHHHHHHHHHHHhHHH-H----HH-----HHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Confidence 34445555666778888999999987532 1 11 234555556556677788888888888754
No 186
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=22.61 E-value=1.3e+02 Score=21.90 Aligned_cols=60 Identities=7% Similarity=0.031 Sum_probs=38.7
Q ss_pred hHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhcc
Q 015687 201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 270 (402)
Q Consensus 201 i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~ 270 (402)
+...+.-| ......+.....|++.+--.. ..++..+.+.+....++-+...+..+..++.
T Consensus 10 l~~~L~~L-~~s~~sI~~~s~w~l~h~~~a---------~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ 69 (132)
T 4flb_A 10 LDRKFQSV-TNTMESIQGLSSWCIENKKHH---------STIVYHWMKWLRRSAYPHRLNLFYLANDVIQ 69 (132)
T ss_dssp HHHHHHHC-CSSHHHHHHHHHHHHHTGGGH---------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-cccHHHHHHHHHHHHHhHHHH---------HHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Confidence 34445555 456677888888988764332 4556666666766777766677766666653
No 187
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=22.28 E-value=96 Score=23.19 Aligned_cols=32 Identities=19% Similarity=0.081 Sum_probs=25.7
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHhhcCCC
Q 015687 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 369 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 400 (402)
+++.|.+-|++.++.++..|+..|..|+..|+
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs 81 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSG 81 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCC
Confidence 56677888888888888888888888887775
No 188
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=22.15 E-value=1.6e+02 Score=21.41 Aligned_cols=57 Identities=9% Similarity=0.144 Sum_probs=33.4
Q ss_pred HHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHh
Q 015687 202 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 268 (402)
Q Consensus 202 ~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l 268 (402)
...+.-| ....+.+.....|++.+--.. ..++..+.+.+....++-+...+..+..+
T Consensus 10 ~~~L~~L-~~s~~sI~~~s~w~l~~~~~a---------~~iv~~i~~~l~~~~~~~KL~~LYLindI 66 (135)
T 4fu3_A 10 EKKLSEL-SNSQQSVQTLSLWLIHHRKHA---------GPIVSVWHRELRKAKSNRKLTFLYLANDV 66 (135)
T ss_dssp HHHHHHC-CSSTTHHHHHHHHHHHTGGGH---------HHHHHHHHHHHHHSCTTTHHHHHHHHHHH
T ss_pred HHHHHHc-cccHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 3344555 455677888888888764322 34555566666555555555555555555
No 189
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=20.10 E-value=2.4e+02 Score=20.48 Aligned_cols=60 Identities=12% Similarity=0.151 Sum_probs=38.2
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 015687 243 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 243 l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
+...+.-|..+.+.|...+.|++.+.-. . .. ++..+.+.+....+.-+...++.+..++.
T Consensus 9 l~~~L~~L~~s~~sI~~~s~w~l~~~~~-a----~~-----iv~~i~~~l~~~~~~~KL~~LYLindIl~ 68 (135)
T 4fu3_A 9 LEKKLSELSNSQQSVQTLSLWLIHHRKH-A----GP-----IVSVWHRELRKAKSNRKLTFLYLANDVIQ 68 (135)
T ss_dssp HHHHHHHCCSSTTHHHHHHHHHHHTGGG-H----HH-----HHHHHHHHHHHSCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHH-H----HH-----HHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 4444555566778899999999987532 1 11 23445555554555667888888888864
Done!