BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015689
         (402 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1LN1|A Chain A, Crystal Structure Of Human Phosphatidylcholine Transfer
           Protein In Complex With Dilinoleoylphosphatidylcholine
          Length = 214

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 88/189 (46%), Gaps = 15/189 (7%)

Query: 108 WENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVV 167
           W+ +++     +Y   R    K G  +Y    V E+C+P +L D YMD+DYR +WD+ V 
Sbjct: 30  WQLLVETSGISIY---RLLDKKTGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYV- 85

Query: 168 EHKQLQVDKTNGTEIGRIIKKFPL-LTPREYVLAWRL----WEGRDQTFYCFSKECDHPL 222
             K+L   + NG  +     K+P  ++ R+YV   +      EGR +     ++    P 
Sbjct: 86  --KELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGR-KIHVILARSTSMPQ 142

Query: 223 APPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLNVG--MAKLAFAKGIWSYVC 280
              +   +RV  ++    I+   G+   ++ +++ ++ G  +   +   A   G+ +++ 
Sbjct: 143 LGERSGVIRVKQYKQSLAIES-DGKKGSKVFMYYFDNPGGQIPSWLINWAAKNGVPNFLK 201

Query: 281 KMDNALRNY 289
            M  A +NY
Sbjct: 202 DMARACQNY 210


>pdb|1LN2|A Chain A, Crystal Structure Of Human Phosphatidylcholine Transfer
           Protein In Complex With Dilinoleoylphosphatidylcholine
           (Seleno-Met Protein)
 pdb|1LN2|B Chain B, Crystal Structure Of Human Phosphatidylcholine Transfer
           Protein In Complex With Dilinoleoylphosphatidylcholine
           (Seleno-Met Protein)
 pdb|1LN3|A Chain A, Structure Of Human Phosphatidylcholine Transfer Protein In
           Complex With Palmitoyl-Linoleoyl Phosphatidylcholine
           (Seleno-Met Protein)
 pdb|1LN3|B Chain B, Structure Of Human Phosphatidylcholine Transfer Protein In
           Complex With Palmitoyl-Linoleoyl Phosphatidylcholine
           (Seleno-Met Protein)
          Length = 214

 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 7/92 (7%)

Query: 108 WENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVV 167
           W+ +++     +Y   R    K G  +Y    V E+C+P +L D Y D+DYR +WD+ V 
Sbjct: 30  WQLLVETSGISIY---RLLDKKTGLYEYKVFGVLEDCSPTLLADIYXDSDYRKQWDQYV- 85

Query: 168 EHKQLQVDKTNGTEIGRIIKKFPL-LTPREYV 198
             K+L   + NG  +     K+P   + R+YV
Sbjct: 86  --KELYEQECNGETVVYWEVKYPFPXSNRDYV 115


>pdb|2R55|A Chain A, Human Star-Related Lipid Transfer Protein 5
 pdb|2R55|B Chain B, Human Star-Related Lipid Transfer Protein 5
          Length = 231

 Score = 38.5 bits (88), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 5/136 (3%)

Query: 159 RVRWDKTVVEHKQLQ--VDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCFSK 216
           RV+WD+ V   + +Q   D    +          L++PR++V    +    D T    + 
Sbjct: 94  RVKWDENVTGFEIIQSITDTLCVSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNAT 153

Query: 217 ECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACE--IRIFHQEDAG-LNVGMAKLAFAK 273
             +HPL PP+  +VR      G   + +PG       +  FH + +G L   +    F +
Sbjct: 154 HVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGYLPQNVVDSFFPR 213

Query: 274 GIWSYVCKMDNALRNY 289
            +  +   +  A++ +
Sbjct: 214 SMTRFYANLQKAVKQF 229


>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
          Length = 212

 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 193 TPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEI 252
           +PR   + W+  +G      C++ +   P A       RVT+  SG     V  +D  E 
Sbjct: 30  SPR---VEWKFVQGSTTALVCYNSQITAPYAD------RVTFSSSGITFSSVTRKDNGEY 80

Query: 253 RIFHQEDAGLNVGMAKL 269
                E+ G N G   +
Sbjct: 81  TCMVSEEGGQNYGEVSI 97


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,036,461
Number of Sequences: 62578
Number of extensions: 373283
Number of successful extensions: 640
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 636
Number of HSP's gapped (non-prelim): 5
length of query: 402
length of database: 14,973,337
effective HSP length: 101
effective length of query: 301
effective length of database: 8,652,959
effective search space: 2604540659
effective search space used: 2604540659
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)