Query 015689
Match_columns 402
No_of_seqs 187 out of 801
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 08:39:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2761 START domain-containin 100.0 2.1E-42 4.5E-47 322.8 23.5 207 83-292 5-218 (219)
2 cd08870 START_STARD2_7-like Li 100.0 6.2E-40 1.3E-44 307.7 26.7 200 85-289 2-209 (209)
3 cd08910 START_STARD2-like Lipi 100.0 2.1E-39 4.6E-44 304.3 25.3 199 84-289 3-207 (207)
4 cd08871 START_STARD10-like Lip 100.0 9.3E-38 2E-42 294.9 27.3 199 84-292 5-206 (222)
5 cd08911 START_STARD7-like Lipi 100.0 1.8E-37 3.9E-42 291.1 24.8 183 104-289 19-207 (207)
6 cd08904 START_STARD6-like Lipi 100.0 1.7E-35 3.6E-40 277.7 24.9 192 87-287 7-204 (204)
7 cd08868 START_STARD1_3_like Ch 100.0 1.4E-33 3.1E-38 263.9 24.2 189 88-288 11-207 (208)
8 cd08872 START_STARD11-like Cer 100.0 7.8E-33 1.7E-37 264.8 24.9 195 87-288 8-226 (235)
9 cd08906 START_STARD3-like Chol 100.0 9.3E-33 2E-37 259.9 23.8 190 88-288 11-208 (209)
10 cd08903 START_STARD5-like Lipi 100.0 2.3E-32 4.9E-37 256.8 25.8 192 88-288 8-207 (208)
11 cd08867 START_STARD4_5_6-like 100.0 1.6E-32 3.4E-37 256.5 24.5 190 88-286 8-205 (206)
12 smart00234 START in StAR and p 100.0 4.4E-32 9.6E-37 251.0 24.3 180 104-289 17-203 (206)
13 cd08902 START_STARD4-like Lipi 100.0 3E-32 6.4E-37 253.2 20.9 176 104-287 21-202 (202)
14 cd08905 START_STARD1-like Chol 100.0 1.5E-31 3.3E-36 251.4 21.7 190 87-287 10-207 (209)
15 PF01852 START: START domain; 100.0 1.3E-30 2.7E-35 240.7 26.0 182 104-291 17-205 (206)
16 cd08869 START_RhoGAP C-termina 100.0 2.2E-29 4.7E-34 234.7 22.0 173 104-287 17-195 (197)
17 cd08874 START_STARD9-like C-te 100.0 2.8E-29 6.1E-34 235.8 22.8 167 104-277 20-195 (205)
18 cd00177 START Lipid-binding ST 100.0 9.1E-29 2E-33 223.3 24.3 175 106-286 15-192 (193)
19 cd08876 START_1 Uncharacterize 100.0 5.3E-28 1.2E-32 222.4 24.0 176 105-287 16-195 (195)
20 cd08873 START_STARD14_15-like 100.0 5.4E-28 1.2E-32 231.0 24.0 172 84-268 38-212 (235)
21 cd08877 START_2 Uncharacterize 100.0 7.7E-28 1.7E-32 226.3 22.3 178 105-288 21-214 (215)
22 cd08914 START_STARD15-like Lip 100.0 2E-27 4.4E-32 226.8 22.8 172 105-290 55-233 (236)
23 cd08913 START_STARD14-like Lip 100.0 5.1E-27 1.1E-31 225.2 22.1 163 105-277 58-227 (240)
24 cd08907 START_STARD8-like C-te 99.9 3.1E-26 6.7E-31 213.5 22.2 173 103-286 24-202 (205)
25 cd08909 START_STARD13-like C-t 99.9 2.4E-25 5.2E-30 209.0 24.3 172 105-285 26-201 (205)
26 cd08908 START_STARD12-like C-t 99.9 1.4E-24 3E-29 203.8 23.8 184 89-285 13-200 (204)
27 PLN00188 enhanced disease resi 99.9 7.4E-24 1.6E-28 225.6 21.3 183 104-292 196-392 (719)
28 KOG1739 Serine/threonine prote 99.6 6.9E-15 1.5E-19 150.1 12.3 201 84-288 381-602 (611)
29 cd08875 START_ArGLABRA2_like C 99.5 1.7E-12 3.7E-17 123.9 18.3 193 87-286 8-228 (229)
30 cd08864 SRPBCC_DUF3074 DUF3074 99.5 4.2E-12 9.1E-17 119.9 19.1 122 156-279 62-199 (208)
31 cd07813 COQ10p_like Coenzyme Q 99.2 4.8E-10 1E-14 97.2 14.3 133 137-288 3-137 (138)
32 cd08866 SRPBCC_11 Ligand-bindi 99.0 2.6E-08 5.5E-13 86.4 17.1 137 136-287 2-143 (144)
33 PF11274 DUF3074: Protein of u 99.0 2.4E-08 5.2E-13 92.8 17.9 136 143-279 13-177 (184)
34 cd07819 SRPBCC_2 Ligand-bindin 98.9 1.4E-07 3E-12 80.6 15.9 134 135-286 4-140 (140)
35 cd05018 CoxG Carbon monoxide d 98.7 6.7E-07 1.5E-11 76.7 15.9 137 134-286 2-143 (144)
36 cd07821 PYR_PYL_RCAR_like Pyra 98.3 2.6E-05 5.7E-10 66.1 15.3 134 135-286 3-139 (140)
37 PF03364 Polyketide_cyc: Polyk 98.3 4.5E-05 9.7E-10 65.0 16.6 124 143-283 2-130 (130)
38 cd07817 SRPBCC_8 Ligand-bindin 98.2 8.8E-05 1.9E-09 63.3 16.0 129 136-286 3-137 (139)
39 PRK10724 hypothetical protein; 98.2 7.8E-05 1.7E-09 67.7 16.1 138 132-288 14-153 (158)
40 cd08861 OtcD1_ARO-CYC_like N-t 98.0 0.00032 6.9E-09 60.5 14.8 132 138-286 4-140 (142)
41 cd07824 SRPBCC_6 Ligand-bindin 97.9 0.0011 2.4E-08 58.1 16.6 133 135-284 3-144 (146)
42 cd08860 TcmN_ARO-CYC_like N-te 97.8 0.0023 5E-08 57.1 17.5 133 138-288 6-144 (146)
43 cd08865 SRPBCC_10 Ligand-bindi 97.7 0.003 6.5E-08 53.2 16.5 130 138-286 4-138 (140)
44 PF10604 Polyketide_cyc2: Poly 97.7 0.01 2.3E-07 50.0 18.8 130 134-286 3-138 (139)
45 cd07812 SRPBCC START/RHO_alpha 97.6 0.0038 8.3E-08 50.9 15.1 131 137-284 3-139 (141)
46 cd07822 SRPBCC_4 Ligand-bindin 97.4 0.013 2.9E-07 49.4 15.7 135 136-288 3-138 (141)
47 cd08862 SRPBCC_Smu440-like Lig 97.4 0.012 2.7E-07 49.8 15.5 129 135-286 3-136 (138)
48 cd07823 SRPBCC_5 Ligand-bindin 97.3 0.017 3.7E-07 50.6 15.4 134 138-286 4-144 (146)
49 cd07818 SRPBCC_1 Ligand-bindin 97.2 0.026 5.6E-07 49.1 16.3 135 135-287 4-149 (150)
50 cd07825 SRPBCC_7 Ligand-bindin 96.8 0.062 1.3E-06 46.2 14.3 136 136-286 3-143 (144)
51 PF06240 COXG: Carbon monoxide 96.7 0.26 5.5E-06 43.3 17.7 131 139-286 3-139 (140)
52 cd07814 SRPBCC_CalC_Aha1-like 96.5 0.27 5.9E-06 41.5 16.2 134 137-287 4-138 (139)
53 COG5637 Predicted integral mem 96.4 0.16 3.5E-06 47.4 14.9 140 132-292 69-210 (217)
54 COG3427 Carbon monoxide dehydr 96.4 0.13 2.8E-06 46.5 14.0 135 135-287 3-144 (146)
55 COG2867 Oligoketide cyclase/li 96.3 0.045 9.7E-07 49.2 10.2 134 134-287 3-136 (146)
56 cd07820 SRPBCC_3 Ligand-bindin 96.0 0.54 1.2E-05 40.6 15.8 107 138-262 4-113 (137)
57 TIGR01599 PYST-A Plasmodium yo 95.7 1.2 2.7E-05 42.4 17.8 160 87-255 17-208 (208)
58 KOG3845 MLN, STAR and related 94.9 0.0011 2.5E-08 64.2 -5.5 176 108-289 27-209 (241)
59 cd08894 SRPBCC_CalC_Aha1-like_ 94.6 2.4 5.2E-05 36.6 15.2 133 136-287 3-138 (139)
60 cd08893 SRPBCC_CalC_Aha1-like_ 94.5 2.2 4.8E-05 35.8 14.5 133 136-287 3-135 (136)
61 cd08896 SRPBCC_CalC_Aha1-like_ 94.2 3.4 7.4E-05 36.0 16.6 140 136-287 3-145 (146)
62 cd07816 Bet_v1-like Ligand-bin 94.2 3.8 8.2E-05 36.3 17.7 118 135-263 3-122 (148)
63 PF08327 AHSA1: Activator of H 94.0 3 6.5E-05 34.5 16.5 123 143-286 1-123 (124)
64 cd08899 SRPBCC_CalC_Aha1-like_ 91.9 5.2 0.00011 35.5 13.3 131 129-288 7-137 (157)
65 cd08900 SRPBCC_CalC_Aha1-like_ 87.1 19 0.00041 31.1 17.7 136 137-287 4-142 (143)
66 cd08895 SRPBCC_CalC_Aha1-like_ 87.1 19 0.00042 31.2 17.8 136 138-287 5-145 (146)
67 cd07826 SRPBCC_CalC_Aha1-like_ 83.5 29 0.00063 30.1 16.2 136 136-287 3-141 (142)
68 COG3832 Uncharacterized conser 82.7 34 0.00074 30.3 15.0 139 132-286 7-147 (149)
69 PF10698 DUF2505: Protein of u 79.5 46 0.001 29.8 17.7 139 138-289 4-158 (159)
70 KOG2200 Tumour suppressor prot 79.4 0.46 1E-05 51.3 -0.8 73 188-269 572-646 (674)
71 cd08901 SRPBCC_CalC_Aha1-like_ 76.3 49 0.0011 28.4 13.3 125 136-287 3-131 (136)
72 KOG3177 Oligoketide cyclase/li 65.9 64 0.0014 31.1 10.0 122 134-272 69-194 (227)
73 cd08898 SRPBCC_CalC_Aha1-like_ 64.7 85 0.0018 26.4 14.1 137 135-287 3-144 (145)
74 cd08897 SRPBCC_CalC_Aha1-like_ 59.6 1.1E+02 0.0024 25.9 14.3 128 136-287 3-132 (133)
75 cd08891 SRPBCC_CalC Ligand-bin 48.1 1.8E+02 0.0039 25.1 16.1 138 136-288 3-149 (149)
76 PF12273 RCR: Chitin synthesis 47.5 8.2 0.00018 33.7 0.7 14 25-38 5-18 (130)
77 PF12273 RCR: Chitin synthesis 40.9 20 0.00043 31.3 2.2 18 25-42 2-19 (130)
78 PTZ00220 Activator of HSP-90 A 37.3 2.7E+02 0.0058 23.9 13.3 122 143-287 2-127 (132)
79 PF04707 PRELI: PRELI-like fam 32.7 3.7E+02 0.008 24.1 14.6 115 161-285 14-143 (157)
80 PF03646 FlaG: FlaG protein; 23.2 93 0.002 25.9 3.3 63 83-154 31-94 (107)
81 COG3462 Predicted membrane pro 21.8 1.6E+02 0.0035 25.6 4.4 22 78-99 95-116 (117)
No 1
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=100.00 E-value=2.1e-42 Score=322.81 Aligned_cols=207 Identities=38% Similarity=0.647 Sum_probs=190.0
Q ss_pred ccCCCHHHHHHHHHHhhcc-CCCCCCCeEEEecCCcEEEEeeeeccCCCCCeEEEEEEEeccCCHHHHHHHHhCccchhH
Q 015689 83 SEIVSDADLKFLIETLEDN-FSENDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVR 161 (402)
Q Consensus 83 ~~~vsdedl~~ll~llee~-~~~~~~Wklv~ek~gikVyyka~r~~p~~G~~~yK~~~viedaspE~V~d~l~D~e~R~k 161 (402)
...|+++++.+++++++++ +.++.+|++++++.++.++|+ +.|++|+++||++++++|+||+.|+|+++|.|||++
T Consensus 5 ~~~vs~~~~~~~~~~~e~~~~~~~~~We~~~~k~~~~i~~q---~~~~~g~~~Yk~~~vfeDvtp~~~~Dv~~D~eYRkk 81 (219)
T KOG2761|consen 5 DGGVSEEDLPELLDLLEEKACDAGQGWELVMDKSTPSIWRQ---RRPKTGLYEYKSRTVFEDVTPEIVRDVQWDDEYRKK 81 (219)
T ss_pred cCcccccchHHHHHhhcccccCcccchhhhcccCCceEEEE---cccCCCCEEEEEEEEEcCCCHHHHHHHHhhhHHHHH
Confidence 5789999999999999987 456789999999999999976 478899999999999999999999999999999999
Q ss_pred HHhhcceeEEEEEecCCCeEEEEEEeecC-CCCCceEEEEeeEEEeCCCeEEEEEEeecCCCCCCCCCeEEEEEeeEEEE
Q 015689 162 WDKTVVEHKQLQVDKTNGTEIGRIIKKFP-LLTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWH 240 (402)
Q Consensus 162 WD~~v~e~evLE~~~d~~t~Ivy~v~k~P-~VS~RDFV~~rri~~~~dg~~~Iv~kSVehp~~P~~kg~VR~e~~~sgwv 240 (402)
||.++.+.++||++...|++|+||+.++| |+++||||++||+|+.+++.++|++++++||.+|+++++||+..+.+||+
T Consensus 82 WD~~vi~~e~ie~d~~tg~~vv~w~~kfP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~ 161 (219)
T KOG2761|consen 82 WDDMVIELETIEEDPVTGTEVVYWVKKFPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSYPPLKKKVRVTVYRSGWL 161 (219)
T ss_pred HHHHhhhheeeeecCCCCceEEEEEEeCCcccCCccEEEEEEEEecCCceEEEEEecccCCCcCCcCCcEEEEEEEEEEE
Confidence 99999999999997667999999999999 69999999999999988788999999999999999999999999999999
Q ss_pred EE-eeC--CCCceEEEEEEEecCCCC--hhhHhhhHHhhHHHHHHHHHHHHHhhhhh
Q 015689 241 IK-KVP--GRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALRNYAVV 292 (402)
Q Consensus 241 Ir-pv~--g~~~~kVt~i~~~DpgG~--~wLIN~a~~~g~~~~lkkL~~al~kY~~~ 292 (402)
|+ +.. +.++|.+++.++.||+|. .|++|+++.+|||+++++|.++|++|+..
T Consensus 162 I~~~~~~~~~~~~~~~~~~~~~p~~~iP~~~v~~~~~~gmp~~vkKm~~a~~~Y~~~ 218 (219)
T KOG2761|consen 162 IRVESRSGDEQGCACEYLYFHNPGGGIPKWVVKLAVRKGMPGAVKKMEKALLAYQEK 218 (219)
T ss_pred EEcccccCCCCccEEEEEEEECCCCCCcHHHHHHHHHhcChHHHHHHHHHHHhhhhc
Confidence 99 332 334777777777788777 89999999999999999999999999864
No 2
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=100.00 E-value=6.2e-40 Score=307.67 Aligned_cols=200 Identities=38% Similarity=0.678 Sum_probs=181.8
Q ss_pred CCCHHHHHHHHHHhhccCCCCCCCeEEEecCC----cEEEEeeeeccCCCCCeEEEEEEEeccCCHHHHHHHHhCccchh
Q 015689 85 IVSDADLKFLIETLEDNFSENDKWENVIDKRN----NLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRV 160 (402)
Q Consensus 85 ~vsdedl~~ll~llee~~~~~~~Wklv~ek~g----ikVyyka~r~~p~~G~~~yK~~~viedaspE~V~d~l~D~e~R~ 160 (402)
.|+|+||++|++++++... .++|+++++++| ++||.+ ..+++|+.+||++++|+++|+++|+++++|.++|+
T Consensus 2 ~~~~~d~~~~~~~~~~~~~-~~~W~~~~~k~~~~~~i~vy~r---~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~ 77 (209)
T cd08870 2 HVSEEDLRDLVQELQEGAE-GQAWQQVMDKSTPDMSYQAWRR---KPKGTGLYEYLVRGVFEDCTPELLRDFYWDDEYRK 77 (209)
T ss_pred CCCHHHHHHHHHHhcCcCC-CCcceEhhhccCCCceEEEEec---ccCCCCceEEEEEEEEcCCCHHHHHHHHcChhhHh
Confidence 6899999999999988633 378999999999 999843 34557889999999998899999999999999999
Q ss_pred HHHhhcceeEEEEEecCCCeEEEEEEeecC-CCCCceEEEEeeEEEeCCCeEEEEEEeecCCCCCCCCCeEEEEEeeEEE
Q 015689 161 RWDKTVVEHKQLQVDKTNGTEIGRIIKKFP-LLTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGW 239 (402)
Q Consensus 161 kWD~~v~e~evLE~~~d~~t~Ivy~v~k~P-~VS~RDFV~~rri~~~~dg~~~Iv~kSVehp~~P~~kg~VR~e~~~sgw 239 (402)
+||+++.++++|+.+.+++++|+|++.++| ++++||||+.+++++..++.++|+.++++||.+|+. |+||++.+.++|
T Consensus 78 ~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~-~~vRv~~~~~~~ 156 (209)
T cd08870 78 KWDETVIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDRSYVCVTKGVPYPSVPRS-GRKRVDDYESSL 156 (209)
T ss_pred hhhhheeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCC-CcEEEEEEEeEE
Confidence 999999999999984333799999999999 499999999998887767889999999999999999 999999999999
Q ss_pred EEEeeC-CCCceEEEEEEEecCCCC--hhhHhhhHHhhHHHHHHHHHHHHHhh
Q 015689 240 HIKKVP-GRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALRNY 289 (402)
Q Consensus 240 vIrpv~-g~~~~kVt~i~~~DpgG~--~wLIN~a~~~g~~~~lkkL~~al~kY 289 (402)
+|+|++ ++++|+++++++.||||+ .||+|+++.+++|++|++|+++|++|
T Consensus 157 ~i~p~~~~~~~t~~~~~~~~dp~G~IP~wlvN~~~~~~~~~~l~~l~~a~~~Y 209 (209)
T cd08870 157 VIRAVKGDGQGSACEVTYFHNPDGGIPRELAKLAVKRGMPGFLKKLENALRKY 209 (209)
T ss_pred EEEEecCCCCceEEEEEEEECCCCCCCHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 999985 455899999999999999 89999999999999999999999988
No 3
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=100.00 E-value=2.1e-39 Score=304.34 Aligned_cols=199 Identities=21% Similarity=0.415 Sum_probs=178.5
Q ss_pred cCCCHHHHHHHHHHhhccCCCCCCCeEEEecCCcEEEEeeeeccCCCCCeEEEEEEEeccCCHHHHHHHHhCccchhHHH
Q 015689 84 EIVSDADLKFLIETLEDNFSENDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWD 163 (402)
Q Consensus 84 ~~vsdedl~~ll~llee~~~~~~~Wklv~ek~gikVyyka~r~~p~~G~~~yK~~~viedaspE~V~d~l~D~e~R~kWD 163 (402)
+.|||+||.+++.+++++..++++|+++++++|++||.+ ..+++|+.+||++++|+++++++++++++|.++|++||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~W~l~~~~~~i~Vy~r---~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd 79 (207)
T cd08910 3 GTFSEEQFREACAELQQPALDGAAWELLVESSGISIYRL---LDEQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWD 79 (207)
T ss_pred cccCHHHHHHHHHHhcCCCCCCCCeEEEEecCCeEEEEe---ccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHH
Confidence 679999999999999987777889999999999999944 47788899999999999899999999999999999999
Q ss_pred hhcceeEEEEEecCCCeEEEEEEeecC-CCCCceEEEEeeEEEe--CCCe-EEEEEEeecCCCCCCCCCeEEEEEeeEEE
Q 015689 164 KTVVEHKQLQVDKTNGTEIGRIIKKFP-LLTPREYVLAWRLWEG--RDQT-FYCFSKECDHPLAPPQRKYVRVTYFRSGW 239 (402)
Q Consensus 164 ~~v~e~evLE~~~d~~t~Ivy~v~k~P-~VS~RDFV~~rri~~~--~dg~-~~Iv~kSVehp~~P~~kg~VR~e~~~sgw 239 (402)
+++.+ +++. .+++++|+|+..++| |+++||||+.++.... +++. ++++.++++||.+|+++|+||+..+.++|
T Consensus 80 ~~~~~--~~~~-~~~~~~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~ 156 (207)
T cd08910 80 QYVKE--LYEK-ECDGETVIYWEVKYPFPLSNRDYVYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSL 156 (207)
T ss_pred HHHHh--heee-cCCCCEEEEEEEEcCCCCCCceEEEEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEE
Confidence 99987 5666 567889999999999 4999999998765432 2333 45678999999999999999999999999
Q ss_pred EEEeeCCCCceEEEEEEEecCCCC--hhhHhhhHHhhHHHHHHHHHHHHHhh
Q 015689 240 HIKKVPGRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALRNY 289 (402)
Q Consensus 240 vIrpv~g~~~~kVt~i~~~DpgG~--~wLIN~a~~~g~~~~lkkL~~al~kY 289 (402)
+|+|. ++++|+++|++|.||||+ .|++|++++++++.++++|+++|++|
T Consensus 157 ~i~p~-~~~~t~i~~~~~~DPgG~IP~wlvN~~~~~~~~~~l~~l~ka~~~y 207 (207)
T cd08910 157 AIESD-GKKGSKVFMYYFDNPGGMIPSWLINWAAKNGVPNFLKDMQKACQNY 207 (207)
T ss_pred EEEeC-CCCceEEEEEEEeCCCCcchHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 99997 666899999999999999 89999999999999999999999998
No 4
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=100.00 E-value=9.3e-38 Score=294.88 Aligned_cols=199 Identities=21% Similarity=0.324 Sum_probs=181.9
Q ss_pred cCCCHHHHHHHHHHhhccCCCCCCCeEEEecCCcEEEEeeeeccCCCCCeEEEEEEEeccCCHHHHHHHHhCccchhHHH
Q 015689 84 EIVSDADLKFLIETLEDNFSENDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWD 163 (402)
Q Consensus 84 ~~vsdedl~~ll~llee~~~~~~~Wklv~ek~gikVyyka~r~~p~~G~~~yK~~~viedaspE~V~d~l~D~e~R~kWD 163 (402)
.++|+|+|+.|++++++ +++|++.++++|++||++. .++++...||++++|+++++++++++++|.++|++||
T Consensus 5 ~~~~~~~~~~~~~~~~~----~~~W~~~~~~~gi~iy~r~---~~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd 77 (222)
T cd08871 5 RLPTDADFEEFKKLCDS----TDGWKLKYNKNNVKVWTKN---PENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWD 77 (222)
T ss_pred cCCCHHHHHHHHHHhcC----CCCcEEEEcCCCeEEEEee---CCCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhh
Confidence 57899999999999865 3589999999999999753 4556688999999998899999999999999999999
Q ss_pred hhcceeEEEEEecCCCeEEEEEEeecC-CCCCceEEEEeeEEEeCCCeEEEEEEeecCCCCCCCCCeEEEEEeeEEEEEE
Q 015689 164 KTVVEHKQLQVDKTNGTEIGRIIKKFP-LLTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIK 242 (402)
Q Consensus 164 ~~v~e~evLE~~~d~~t~Ivy~v~k~P-~VS~RDFV~~rri~~~~dg~~~Iv~kSVehp~~P~~kg~VR~e~~~sgwvIr 242 (402)
+++.++++|++ .+++++|+|+..++| ++++||||+.+++...+ +.++++..|++||++|+++|+|||+.+.+||+|+
T Consensus 78 ~~~~e~~~ie~-~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~ 155 (222)
T cd08871 78 SNMIESFDICQ-LNPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIR 155 (222)
T ss_pred hhhceeEEEEE-cCCCCEEEEEEeECCCCCCCCeEEEEEEEEeCC-CEEEEEeccccCCCCCCCCCeEEeEEEccEEEEE
Confidence 99999999999 788899999999999 49999999997665544 7888999999999999999999999999999999
Q ss_pred eeCCCCceEEEEEEEecCCCC--hhhHhhhHHhhHHHHHHHHHHHHHhhhhh
Q 015689 243 KVPGRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALRNYAVV 292 (402)
Q Consensus 243 pv~g~~~~kVt~i~~~DpgG~--~wLIN~a~~~g~~~~lkkL~~al~kY~~~ 292 (402)
|+ ++++|+++|+.|+||||+ .||+|+++.+.++.+|++|+++|++|++.
T Consensus 156 p~-~~~~t~vt~~~~~Dp~G~IP~~lvN~~~~~~~~~~l~~l~k~~~~y~~~ 206 (222)
T cd08871 156 PT-GPKGCTLTYVTQNDPKGSLPKWVVNKATTKLAPKVMKKLHKAALKYPEW 206 (222)
T ss_pred EC-CCCCEEEEEEEecCCCCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 98 456899999999999999 89999999999999999999999999986
No 5
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=100.00 E-value=1.8e-37 Score=291.06 Aligned_cols=183 Identities=26% Similarity=0.407 Sum_probs=166.1
Q ss_pred CCCCCeEEEecCCcEEEEeeeeccCCCCCeEEEEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEE
Q 015689 104 ENDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIG 183 (402)
Q Consensus 104 ~~~~Wklv~ek~gikVyyka~r~~p~~G~~~yK~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Iv 183 (402)
+.++|+++++++|++||.+ ..+++|+.+||++++|.++|+++++++++|.++|.+||+++.++++|+++.+++++|+
T Consensus 19 ~~~~W~l~~~~~~i~Vy~r---~~~~s~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~ 95 (207)
T cd08911 19 EPDGWEPFIEKKDMLVWRR---EHPGTGLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEII 95 (207)
T ss_pred cCCCcEEEEEcCceEEEEe---ccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEEE
Confidence 4567999999999999954 4566788999999999889999999999999999999999999999998444589999
Q ss_pred EEEeecC-CCCCceEEEEeeEEEeC-CCeEEEEEEeecCCCCCCCCCeEEEEEeeEEEEEEeeC--CCCceEEEEEEEec
Q 015689 184 RIIKKFP-LLTPREYVLAWRLWEGR-DQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVP--GRDACEIRIFHQED 259 (402)
Q Consensus 184 y~v~k~P-~VS~RDFV~~rri~~~~-dg~~~Iv~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~--g~~~~kVt~i~~~D 259 (402)
|+..++| ++++||||+.++++..+ ++.++|..++++||.+|+.+|+||+..+.++|+|+|.+ ++++|++++++|.|
T Consensus 96 y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~d 175 (207)
T cd08911 96 YWEMQWPKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDN 175 (207)
T ss_pred EEEEECCCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeC
Confidence 9999999 59999999999876654 45667888999999999999999999999999999985 35689999999999
Q ss_pred CCCC--hhhHhhhHHhhHHHHHHHHHHHHHhh
Q 015689 260 AGLN--VGMAKLAFAKGIWSYVCKMDNALRNY 289 (402)
Q Consensus 260 pgG~--~wLIN~a~~~g~~~~lkkL~~al~kY 289 (402)
|||+ .|++|+++++++++||++|++||++|
T Consensus 176 PgG~IP~~lvN~~~~~~~~~~l~~l~~a~~~y 207 (207)
T cd08911 176 PGVNIPSYITSWVAMSGMPDFLERLRNAALKY 207 (207)
T ss_pred CCCccCHHHHHHHHHhhccHHHHHHHHHHhcC
Confidence 9999 89999999999999999999999987
No 6
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=100.00 E-value=1.7e-35 Score=277.71 Aligned_cols=192 Identities=16% Similarity=0.258 Sum_probs=170.0
Q ss_pred CHHHHHHHHHHhhccCCCCCCCeEEEecCCcEEEEeeeeccCCCCCeEEEEEEEeccCCHHHHHHHHhCccchhHHHhhc
Q 015689 87 SDADLKFLIETLEDNFSENDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTV 166 (402)
Q Consensus 87 sdedl~~ll~llee~~~~~~~Wklv~ek~gikVyyka~r~~p~~G~~~yK~~~viedaspE~V~d~l~D~e~R~kWD~~v 166 (402)
.++.++++++..+ +.++|++.+++++++||++ ..++.+...||++++++ +++|++++++.|.+.|.+||+++
T Consensus 7 ~~~~~~~~l~~~~----~~~gWk~~k~~~~~~v~~k---~~~~~~gkl~k~egvi~-~~~e~v~~~l~~~e~r~~Wd~~~ 78 (204)
T cd08904 7 AQETSQEVLGYSR----DTSGWKVVKTSKKITVSWK---PSRKYHGNLYRVEGIIP-ESPAKLIQFMYQPEHRIKWDKSL 78 (204)
T ss_pred HHHHHHHHHhhhh----cccCCeEEecCCceEEEEE---EcCCCCceEEEEEEEec-CCHHHHHHHHhccchhhhhcccc
Confidence 4555666665544 3479999999999999954 34556668999999998 89999999999999999999999
Q ss_pred ceeEEEEEecCCCeEEEEEEee---cCCCCCceEEEEeeEEEeCCCeEEEEEEeecCCCCCCCCCeEEEEEeeEEEEEEe
Q 015689 167 VEHKQLQVDKTNGTEIGRIIKK---FPLLTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKK 243 (402)
Q Consensus 167 ~e~evLE~~~d~~t~Ivy~v~k---~P~VS~RDFV~~rri~~~~dg~~~Iv~kSVehp~~P~~kg~VR~e~~~sgwvIrp 243 (402)
.++++||+ ++++|+|+|.+.+ +++|+|||||.+|++++.+++.+++...|++||.+|+++|+|||+++++||+|+|
T Consensus 79 ~~~~iie~-Id~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~p 157 (204)
T cd08904 79 QVYKMLQR-IDSDTFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSP 157 (204)
T ss_pred cceeeEEE-eCCCcEEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEE
Confidence 99999999 8999999998874 3469999999998877777788888899999999999999999999999999999
Q ss_pred eCCCC-ceEEEEEEEecCCCC--hhhHhhhHHhhHHHHHHHHHHHHH
Q 015689 244 VPGRD-ACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALR 287 (402)
Q Consensus 244 v~g~~-~~kVt~i~~~DpgG~--~wLIN~a~~~g~~~~lkkL~~al~ 287 (402)
+++++ +|.++++.++||+|+ +|+||+++++.|.+|+.+|+++++
T Consensus 158 l~~~p~~t~l~~~~~~DlkG~lP~~vv~~~~~~~~~~f~~~~~~~~~ 204 (204)
T cd08904 158 LPENPAYSKLVMFVQPELRGNLSRSVIEKTMPTNLVNLILDAKDGIK 204 (204)
T ss_pred CCCCCCceEEEEEEEeCCCCCCCHHHHHHHhHHHHHHHHHHHHHhcC
Confidence 97664 799999999999999 899999999999999999999873
No 7
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=100.00 E-value=1.4e-33 Score=263.93 Aligned_cols=189 Identities=20% Similarity=0.363 Sum_probs=162.6
Q ss_pred HHHHHHHHHHhhccCCCCCCCeEEEecC-CcEEEEeeeeccCCCCCeEEEEEEEeccCCHHHHHHH-HhCccchhHHHhh
Q 015689 88 DADLKFLIETLEDNFSENDKWENVIDKR-NNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDF-YMDNDYRVRWDKT 165 (402)
Q Consensus 88 dedl~~ll~llee~~~~~~~Wklv~ek~-gikVyyka~r~~p~~G~~~yK~~~viedaspE~V~d~-l~D~e~R~kWD~~ 165 (402)
++.+++++++++ .++|++.++++ |++||++. .++.+ ..||++++++ ++++++++. +.|.++|++||++
T Consensus 11 ~~~~~~~~~~~~-----~~~W~l~~~~~~~i~i~~r~---~~~~~-~~~k~~~~i~-~~~~~v~~~l~~d~~~~~~Wd~~ 80 (208)
T cd08868 11 AEALARAWSILT-----DPGWKLEKNTTWGDVVYSRN---VPGVG-KVFRLTGVLD-CPAEFLYNELVLNVESLPSWNPT 80 (208)
T ss_pred HHHHHHHHHHhc-----CCCceEEEecCCCCEEEEEE---cCCCc-eEEEEEEEEc-CCHHHHHHHHHcCccccceecCc
Confidence 445555555543 24899999998 99999763 44444 7899999996 999999875 4689999999999
Q ss_pred cceeEEEEEecCCCeEEEEEEeecC---CCCCceEEEEeeEEEeCCCeEEEEEEeecCCCCCCCCCeEEEEEeeEEEEEE
Q 015689 166 VVEHKQLQVDKTNGTEIGRIIKKFP---LLTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIK 242 (402)
Q Consensus 166 v~e~evLE~~~d~~t~Ivy~v~k~P---~VS~RDFV~~rri~~~~dg~~~Iv~kSVehp~~P~~kg~VR~e~~~sgwvIr 242 (402)
+.++++|+. ++++++|+|.+.+.| ++++||||+++++.+. ++.++++..|++||.+|+++|+|||+.+.+||+|+
T Consensus 81 ~~~~~~i~~-~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~-~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~ 158 (208)
T cd08868 81 VLECKIIQV-IDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIR-ENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILR 158 (208)
T ss_pred ccceEEEEE-ecCCcEEEEEEecCcCCCcccccceEEEEEEEec-CCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEE
Confidence 999999999 688899999888643 5899999999776554 46788889999999999999999999999999999
Q ss_pred eeCCC-CceEEEEEEEecCCCC--hhhHhhhHHhhHHHHHHHHHHHHHh
Q 015689 243 KVPGR-DACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALRN 288 (402)
Q Consensus 243 pv~g~-~~~kVt~i~~~DpgG~--~wLIN~a~~~g~~~~lkkL~~al~k 288 (402)
|++++ +.|.++|+.|+||||+ .|++|++++.+++.++++|+++|.+
T Consensus 159 p~~~~~~~t~v~~~~~~Dp~G~iP~~lvN~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 159 PLPNNPNKCNFTWLLNTDLKGWLPQYLVDQALASVLLDFMKHLRKRIAT 207 (208)
T ss_pred ECCCCCCceEEEEEEEECCCCCCcceeeehhhHHHHHHHHHHHHHHHhh
Confidence 98643 5899999999999999 8999999999999999999999875
No 8
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=100.00 E-value=7.8e-33 Score=264.85 Aligned_cols=195 Identities=14% Similarity=0.211 Sum_probs=167.7
Q ss_pred CHHHHHHHHHHhhccCCCCCCCeEEEecCCcEEEEeeeeccCCCCCe--EEEEEEEeccCCHHHHHHHHhCccchhHHHh
Q 015689 87 SDADLKFLIETLEDNFSENDKWENVIDKRNNLLYYNARCCKPKVGPL--KYLSVTVFENCTPEILRDFYMDNDYRVRWDK 164 (402)
Q Consensus 87 sdedl~~ll~llee~~~~~~~Wklv~ek~gikVyyka~r~~p~~G~~--~yK~~~viedaspE~V~d~l~D~e~R~kWD~ 164 (402)
.|+.+++.+..+.+. .++++|++..+++|++||.+ ..+++|.. .||+++++++++++++.++++|.++|.+||.
T Consensus 8 ~~~~~~~~~~~~~~~-~~~~~W~l~~~~~gikVy~r---~~~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~ 83 (235)
T cd08872 8 VDEKVQEQLTYALED-VGADGWQLFAEEGEMKVYRR---EVEEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWET 83 (235)
T ss_pred HHHHHHHHHHHHHcc-CCCCCCEEEEeCCceEEEEE---ECCCCCceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHh
Confidence 466777777777774 34558999999999999954 46666755 7999999999999999999999999999999
Q ss_pred hcceeEEEEEecCCCeEEEEEEeecC-CCCCceEEEEeeEEEeCC-------CeEEEEEEeecCCCCCCCCCeEEEEEee
Q 015689 165 TVVEHKQLQVDKTNGTEIGRIIKKFP-LLTPREYVLAWRLWEGRD-------QTFYCFSKECDHPLAPPQRKYVRVTYFR 236 (402)
Q Consensus 165 ~v~e~evLE~~~d~~t~Ivy~v~k~P-~VS~RDFV~~rri~~~~d-------g~~~Iv~kSVehp~~P~~kg~VR~e~~~ 236 (402)
++.+.++||+ +++++.|+|+..+.| |+++||||+.+++.+.++ +.+++++.|++||.+|+++|+||+....
T Consensus 84 ~~~~~~vie~-l~~~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~ 162 (235)
T cd08872 84 TLENFHVVET-LSQDTLIFHQTHKRVWPAAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTV 162 (235)
T ss_pred hhheeEEEEe-cCCCCEEEEEEccCCCCCCCcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEe
Confidence 9999999999 788899999999999 599999999988765543 5677889999999999999999999744
Q ss_pred ----EE--------EEEEeeCCCCceEEEEEEEecCCCC--hhhHhhhHHhhHHHHHHHHHHHHHh
Q 015689 237 ----SG--------WHIKKVPGRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALRN 288 (402)
Q Consensus 237 ----sg--------wvIrpv~g~~~~kVt~i~~~DpgG~--~wLIN~a~~~g~~~~lkkL~~al~k 288 (402)
++ |.+.| ++..|+++|+.|.||||+ .|++|++.++.+|+||++|.+.+.+
T Consensus 163 ~~~~~~~i~~~~g~~~~t~--~~~~~~ity~~~~dPgG~iP~wvvn~~~k~~~P~~l~~~~~~~~~ 226 (235)
T cd08872 163 AMICQTFVSPPDGNQEITR--DNILCKITYVANVNPGGWAPASVLRAVYKREYPKFLKRFTSYVQE 226 (235)
T ss_pred eeeeeeeeecCCCcccccC--CCCeEEEEEEEEeCCCCCccHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 22 44444 245899999999999999 8999999999999999999999875
No 9
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=100.00 E-value=9.3e-33 Score=259.88 Aligned_cols=190 Identities=18% Similarity=0.342 Sum_probs=163.6
Q ss_pred HHHHHHHHHHhhccCCCCCCCeEEEe-cCCcEEEEeeeeccCCCCCeEEEEEEEeccCCHHHHH-HHHhCccchhHHHhh
Q 015689 88 DADLKFLIETLEDNFSENDKWENVID-KRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILR-DFYMDNDYRVRWDKT 165 (402)
Q Consensus 88 dedl~~ll~llee~~~~~~~Wklv~e-k~gikVyyka~r~~p~~G~~~yK~~~viedaspE~V~-d~l~D~e~R~kWD~~ 165 (402)
.|.|++++++|.+ .++|++..+ ++|++||++ ..+++| ..||++++++ +|++.++ +++.|.+++.+||++
T Consensus 11 ~~~~~~~~~~l~~----~~~W~l~~~~~~gi~V~s~---~~~~~~-~~fk~~~~v~-~~~~~l~~~ll~D~~~~~~W~~~ 81 (209)
T cd08906 11 KEALAVVEQILAQ----EENWKFEKNNDNGDTVYTL---EVPFHG-KTFILKAFMQ-CPAELVYQEVILQPEKMVLWNKT 81 (209)
T ss_pred HHHHHHHHHHhhc----ccCCEEEEecCCCCEEEEe---ccCCCC-cEEEEEEEEc-CCHHHHHHHHHhChhhccccCcc
Confidence 5677788777765 368999876 599999965 355666 8899999997 9999997 688999999999999
Q ss_pred cceeEEEEEecCCCeEEEEEEee-cC--CCCCceEEEEeeEEEeCCCeEEEEEEeecCCCCCCCCCeEEEEEeeEEEEEE
Q 015689 166 VVEHKQLQVDKTNGTEIGRIIKK-FP--LLTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIK 242 (402)
Q Consensus 166 v~e~evLE~~~d~~t~Ivy~v~k-~P--~VS~RDFV~~rri~~~~dg~~~Iv~kSVehp~~P~~kg~VR~e~~~sgwvIr 242 (402)
+.++++|++ +++++.|+|.+.. ++ ++++||||.++++.+.++ .++++..++.|+.+|+++|||||++..+||.+.
T Consensus 82 ~~~~~vi~~-~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~-~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~ 159 (209)
T cd08906 82 VSACQVLQR-VDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRRD-RYVSAGISTTHSHKPPLSKYVRGENGPGGFVVL 159 (209)
T ss_pred chhhhheee-ccCCcEEEEEEccccccCCCCCCceEEEEEEEecCC-cEEEEEEEEecCCCCCCCCeEEEeeeccEEEEE
Confidence 999999999 7888999984442 21 489999999987666554 477788999999999999999999999999999
Q ss_pred ee-CCCCceEEEEEEEecCCCC--hhhHhhhHHhhHHHHHHHHHHHHHh
Q 015689 243 KV-PGRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALRN 288 (402)
Q Consensus 243 pv-~g~~~~kVt~i~~~DpgG~--~wLIN~a~~~g~~~~lkkL~~al~k 288 (402)
|. .+++.|+++|+.|+||||+ +||+|+++.+.+..++.+|++.+..
T Consensus 160 ~~~~~~~~t~vt~~~~~Dp~G~lP~~lvN~~~~~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 160 KSASNPSVCTFIWILNTDLKGRLPRYLIHQSLAATMFEFASHLRQRIRD 208 (209)
T ss_pred ECCCCCCceEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 96 3556899999999999999 8999999999999999999999864
No 10
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=100.00 E-value=2.3e-32 Score=256.81 Aligned_cols=192 Identities=18% Similarity=0.307 Sum_probs=163.9
Q ss_pred HHHHHHHHHHhhccCCCCCCCeEEEecCCcEEEEeeeeccCCCCCeEEEEEEEeccCCHHHHHHHHhCcc--chhHHHhh
Q 015689 88 DADLKFLIETLEDNFSENDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDND--YRVRWDKT 165 (402)
Q Consensus 88 dedl~~ll~llee~~~~~~~Wklv~ek~gikVyyka~r~~p~~G~~~yK~~~viedaspE~V~d~l~D~e--~R~kWD~~ 165 (402)
++.+.++++.. .+.++|++.++++|++||++. .++.....||++++++ +++++++++++|.+ +|.+||++
T Consensus 8 ~~~~~~~l~~~----~~~~~W~~~~~~~~i~v~~~~---~~~~~~~~~k~e~~i~-~s~~~~~~~l~d~~~~~r~~W~~~ 79 (208)
T cd08903 8 ESVADKMLLYR----RDESGWKTCRRTNEVAVSWRP---SAEFAGNLYKGEGIVY-ATLEQVWDCLKPAAGGLRVKWDQN 79 (208)
T ss_pred HHHHHHHHhhh----ccccCCEEEEcCCCEEEEeee---cCCCCCcEEEEEEEec-CCHHHHHHHHHhccchhhhhhhhc
Confidence 44445554443 235789999999999999652 3343335599999997 99999999998754 67999999
Q ss_pred cceeEEEEEecCCCeEEEEEEeecC---CCCCceEEEEeeEEEeCCCeEEEEEEeecCCCCCCCCCeEEEEEeeEEEEEE
Q 015689 166 VVEHKQLQVDKTNGTEIGRIIKKFP---LLTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIK 242 (402)
Q Consensus 166 v~e~evLE~~~d~~t~Ivy~v~k~P---~VS~RDFV~~rri~~~~dg~~~Iv~kSVehp~~P~~kg~VR~e~~~sgwvIr 242 (402)
+.++++||+ +++++.|+|....+| ++++||||+++++.+.+|+.+++...+++||.+|+++|+|||+..++||.++
T Consensus 80 ~~~~~vle~-id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~ 158 (208)
T cd08903 80 VKDFEVVEA-ISDDVSVCRTVTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCE 158 (208)
T ss_pred cccEEEEEE-ecCCEEEEEEecchhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEE
Confidence 999999999 788899988866555 4899999999888788888777777899999999999999999999999999
Q ss_pred eeCC-CCceEEEEEEEecCCCC--hhhHhhhHHhhHHHHHHHHHHHHHh
Q 015689 243 KVPG-RDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALRN 288 (402)
Q Consensus 243 pv~g-~~~~kVt~i~~~DpgG~--~wLIN~a~~~g~~~~lkkL~~al~k 288 (402)
|+++ +++|.++|+.|.||||+ +|++|.++.+.+..|+.+|++++++
T Consensus 159 ~~~~~~~~t~v~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08903 159 PVPGEPDKTQLVSFFQTDLSGYLPQTVVDSFFPASMAEFYNNLTKAVKA 207 (208)
T ss_pred ECCCCCCceEEEEEEEeccCCCcCHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 9874 35899999999999999 8999999999999999999999875
No 11
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=100.00 E-value=1.6e-32 Score=256.48 Aligned_cols=190 Identities=17% Similarity=0.309 Sum_probs=162.9
Q ss_pred HHHHHHHHHHhhccCCCCCCCeEEEecCCcEEEEeeeeccCCCCCeEEEEEEEeccCCHHHHHHHHhC--ccchhHHHhh
Q 015689 88 DADLKFLIETLEDNFSENDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMD--NDYRVRWDKT 165 (402)
Q Consensus 88 dedl~~ll~llee~~~~~~~Wklv~ek~gikVyyka~r~~p~~G~~~yK~~~viedaspE~V~d~l~D--~e~R~kWD~~ 165 (402)
|+..+++++.++ .+++|++.++++|++||++. ..+.....||++++++ ++++++++++.| .++|.+||++
T Consensus 8 ~~~~~~~~~~~~----~~~~W~~~~~~~~i~v~~~~---~~~~~~~~~k~~~~i~-~~~~~v~~~l~d~~~~~r~~Wd~~ 79 (206)
T cd08867 8 EKLANEALQYIN----DTDGWKVLKTVKNITVSWKP---STEFTGHLYRAEGIVD-ALPEKVIDVIIPPCGGLRLKWDKS 79 (206)
T ss_pred HHHHHHHHHHhc----CcCCcEEEEcCCCcEEEEec---CCCCCCEEEEEEEEEc-CCHHHHHHHHHhcCcccccccccc
Confidence 334444444433 34789999999999999752 2333346799999997 899999999998 8999999999
Q ss_pred cceeEEEEEecCCCeEEEEEEeecC---CCCCceEEEEeeEEEeCCCeEEEEEEeecCCCCCCCCCeEEEEEeeEEEEEE
Q 015689 166 VVEHKQLQVDKTNGTEIGRIIKKFP---LLTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIK 242 (402)
Q Consensus 166 v~e~evLE~~~d~~t~Ivy~v~k~P---~VS~RDFV~~rri~~~~dg~~~Iv~kSVehp~~P~~kg~VR~e~~~sgwvIr 242 (402)
+.++++|+. +++++.|+|...++| ++++||||+++.+.+.+++.+++...|++||.+|+.+|+|||++..+||.|+
T Consensus 80 ~~~~~~le~-id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~ 158 (206)
T cd08867 80 LKHYEVLEK-ISEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCS 158 (206)
T ss_pred ccceEEEEE-eCCCeEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEE
Confidence 999999999 688899999876543 5899999999877777777788888999999999999999999999999999
Q ss_pred eeCC-CCceEEEEEEEecCCCC--hhhHhhhHHhhHHHHHHHHHHHH
Q 015689 243 KVPG-RDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNAL 286 (402)
Q Consensus 243 pv~g-~~~~kVt~i~~~DpgG~--~wLIN~a~~~g~~~~lkkL~~al 286 (402)
|.++ ++.|.++|+.|+||||+ .|++|.++.+.+..|+++|++++
T Consensus 159 p~~~~~~~t~~~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 159 PLKGSPDKSFLVLYVQTDLRGMIPQSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred ECCCCCCceEEEEEEEeccCCCCcHHHHHhhhhhhHHHHHHHHHHhc
Confidence 9864 35899999999999999 89999999999999999999986
No 12
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=100.00 E-value=4.4e-32 Score=250.97 Aligned_cols=180 Identities=21% Similarity=0.297 Sum_probs=159.3
Q ss_pred CCCCCeEEEe-cCCcEEEEeeeeccCC-CCCeEEEEEEEeccCCHH-HHHHHHhCccchhHHHhhcceeEEEEEecCCCe
Q 015689 104 ENDKWENVID-KRNNLLYYNARCCKPK-VGPLKYLSVTVFENCTPE-ILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGT 180 (402)
Q Consensus 104 ~~~~Wklv~e-k~gikVyyka~r~~p~-~G~~~yK~~~viedaspE-~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t 180 (402)
+.++|++..+ ++|+.+|++ ..++ ++...||+++++++ +++ .+.+++.|.++|++||+++.++++||. .++++
T Consensus 17 ~~~~W~~~~~~~~~~~~~~~---~~~~~~~~~~~k~~~~v~~-~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~-~~~~~ 91 (206)
T smart00234 17 SEPGWVLSSENENGDEVRSI---LSPGRSPGEASRAVGVVPM-VCADLVEELMDDLRYRPEWDKNVAKAETLEV-IDNGT 91 (206)
T ss_pred CCCccEEccccCCcceEEEE---ccCCCCceEEEEEEEEEec-ChHHHHHHHHhcccchhhCchhcccEEEEEE-ECCCC
Confidence 4578999997 788888865 2333 46889999999984 555 588899999999999999999999999 67889
Q ss_pred EEEEEEeecC--CCCCceEEEEeeEEEeCCCeEEEEEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEe
Q 015689 181 EIGRIIKKFP--LLTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQE 258 (402)
Q Consensus 181 ~Ivy~v~k~P--~VS~RDFV~~rri~~~~dg~~~Iv~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~ 258 (402)
.|+|++.++| ++++||||+++++++.+++.++++.+|++||.+|+.+|+|||+.+.+||+|+|++ ++.|+++|+.|+
T Consensus 92 ~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~-~~~t~vt~~~~~ 170 (206)
T smart00234 92 VIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLG-NGPSKVTWVSHA 170 (206)
T ss_pred eEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECC-CCCeEEEEEEEE
Confidence 9999999888 5899999999888776778888888999999999999999999999999999984 446999999999
Q ss_pred cCCCC--hhhHhhhHHhhHHHHHHHHHHHHHhh
Q 015689 259 DAGLN--VGMAKLAFAKGIWSYVCKMDNALRNY 289 (402)
Q Consensus 259 DpgG~--~wLIN~a~~~g~~~~lkkL~~al~kY 289 (402)
||||+ .|++|.+++.+++.+++.|++++++.
T Consensus 171 D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~ 203 (206)
T smart00234 171 DLKGWLPHWLVRSLIKSGLAEFAKTWVATLQKH 203 (206)
T ss_pred ecCCCccceeehhhhhhhHHHHHHHHHHHHHHH
Confidence 99999 89999999999999999999988764
No 13
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=100.00 E-value=3e-32 Score=253.24 Aligned_cols=176 Identities=16% Similarity=0.219 Sum_probs=159.6
Q ss_pred CCCCCeEEEecCCcEEEEeeeeccCCCCCeEEEEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEE
Q 015689 104 ENDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIG 183 (402)
Q Consensus 104 ~~~~Wklv~ek~gikVyyka~r~~p~~G~~~yK~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Iv 183 (402)
++++|++.++++|+.|| ++..++.+.+.||++++++ ..+++|++.+.+..+|.+||++++++++||+ +++++.|+
T Consensus 21 ~~~~Wkl~k~~~~~~v~---~k~~~ef~gkl~R~Egvv~-~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~-Id~dt~I~ 95 (202)
T cd08902 21 LEEEWRVAKKSKDVTVW---RKPSEEFGGYLYKAQGVVE-DVYNRIVDHIRPGPYRLDWDSLMTSMDIIEE-FEENCCVM 95 (202)
T ss_pred cccCcEEEEeCCCEEEE---EecCCcCCCceEEEEEEec-CCHHHHHHHHhcccchhcccchhhheeHhhh-hcCCcEEE
Confidence 46799999999999999 4457788889999999997 7889999999999999999999999999999 89999999
Q ss_pred EEEe-ecC--CCCCceEEEEeeEEEeCCCeEEEEEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCC-ceEEEEEEEec
Q 015689 184 RIIK-KFP--LLTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRD-ACEIRIFHQED 259 (402)
Q Consensus 184 y~v~-k~P--~VS~RDFV~~rri~~~~dg~~~Iv~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~-~~kVt~i~~~D 259 (402)
++++ +.| +|+|||||.++++.+.+|+. +.+..|++|+..|+ |+|||+++++||+++|+++++ .|.++|+.|+|
T Consensus 96 ~yvt~~~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~~pp--g~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~D 172 (202)
T cd08902 96 RYTTAGQLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYEEARP--NFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTD 172 (202)
T ss_pred EEEcccCCcCccCccceEEEEEEEEeCCCe-EEEEeeecCCCCCC--CeEeecccccEEEEEECCCCCCceEEEEEEEec
Confidence 6666 444 58999999999998888885 55689999998887 999999999999999998774 89999999999
Q ss_pred CCCC--hhhHhhhHHhhHHHHHHHHHHHHH
Q 015689 260 AGLN--VGMAKLAFAKGIWSYVCKMDNALR 287 (402)
Q Consensus 260 pgG~--~wLIN~a~~~g~~~~lkkL~~al~ 287 (402)
++|+ +.+||++++++|.+|+.+|+++++
T Consensus 173 LkG~LPqsiIdq~~~~~~~~F~~~Lrk~~~ 202 (202)
T cd08902 173 LRGMLPQSAVDTAMASTLVNFYSDLKKALK 202 (202)
T ss_pred CCCCccHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 9999 899999999999999999999874
No 14
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=100.00 E-value=1.5e-31 Score=251.36 Aligned_cols=190 Identities=14% Similarity=0.196 Sum_probs=162.8
Q ss_pred CHHHHHHHHHHhhccCCCCCCCeEEE-ecCCcEEEEeeeeccCCCCCeEEEEEEEeccCCHHHHH-HHHhCccchhHHHh
Q 015689 87 SDADLKFLIETLEDNFSENDKWENVI-DKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILR-DFYMDNDYRVRWDK 164 (402)
Q Consensus 87 sdedl~~ll~llee~~~~~~~Wklv~-ek~gikVyyka~r~~p~~G~~~yK~~~viedaspE~V~-d~l~D~e~R~kWD~ 164 (402)
.++.++++++.++ +.++|++.+ +++|++||++ ..+++| ..||++++++ ++++.++ .++.|.+.+++||+
T Consensus 10 ~~~~~~~~~~~~~----~~~~W~~~~~~~~gi~v~s~---~~~~~~-k~~k~e~~i~-~~~~~l~~~l~~d~e~~~~W~~ 80 (209)
T cd08905 10 GEEALQKSLSILQ----DQEGWKTEIVAENGDKVLSK---VVPDIG-KVFRLEVVVD-QPLDNLYSELVDRMEQMGEWNP 80 (209)
T ss_pred HHHHHHHHHHHhc----cccCCEEEEecCCCCEEEEE---EcCCCC-cEEEEEEEec-CCHHHHHHHHHhchhhhceecc
Confidence 4567777777764 346899995 5899999975 356666 8999999997 9999999 45558899999999
Q ss_pred hcceeEEEEEecCCCeEEEEEEe-ecC--CCCCceEEEEeeEEEeCCCeEEEEEEeecCCCCCCCCCeEEEEEeeEEEEE
Q 015689 165 TVVEHKQLQVDKTNGTEIGRIIK-KFP--LLTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHI 241 (402)
Q Consensus 165 ~v~e~evLE~~~d~~t~Ivy~v~-k~P--~VS~RDFV~~rri~~~~dg~~~Iv~kSVehp~~P~~kg~VR~e~~~sgwvI 241 (402)
++.++++|++ +++++.|+|... .+| +|++||||.++++.+.+ +.++++..+++||.+|+++|+|||+...+||+|
T Consensus 81 ~~~~~~vl~~-id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~-~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l 158 (209)
T cd08905 81 NVKEVKILQR-IGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRG-STCVLAGMATHFGLMPEQKGFIRAENGPTCIVL 158 (209)
T ss_pred cchHHHHHhh-cCCCceEEEEEeccCCCCccCccceEEEEEEEEcC-CcEEEEEEeecCCCCCCCCCeEEEEeeccEEEE
Confidence 9999999999 788899999843 333 38999999987665554 556777899999999999999999999999999
Q ss_pred EeeCCC-CceEEEEEEEecCCCC--hhhHhhhHHhhHHHHHHHHHHHHH
Q 015689 242 KKVPGR-DACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALR 287 (402)
Q Consensus 242 rpv~g~-~~~kVt~i~~~DpgG~--~wLIN~a~~~g~~~~lkkL~~al~ 287 (402)
+|++++ +.|+++|+.|+||||+ .||+|.++.+.+..++.+|++.+.
T Consensus 159 ~p~~~~~~~t~v~~~~~~DpkG~iP~~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 159 RPLAGDPSKTKLTWLLSIDLKGWLPKSIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred EECCCCCCceEEEEEEeecCCCCCCHHHHHHHhHHhHHHHHHHHHHHHh
Confidence 998543 5899999999999999 899999999999999999999886
No 15
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.98 E-value=1.3e-30 Score=240.67 Aligned_cols=182 Identities=24% Similarity=0.421 Sum_probs=156.8
Q ss_pred CCCCCeEEEecCCcEEEEeeeeccCCC-CCeEEEEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEE
Q 015689 104 ENDKWENVIDKRNNLLYYNARCCKPKV-GPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEI 182 (402)
Q Consensus 104 ~~~~Wklv~ek~gikVyyka~r~~p~~-G~~~yK~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~I 182 (402)
++++|++..++++..++++. ...... +...||++++++ +++++++..++|... +||+++.++++||. ++++++|
T Consensus 17 ~~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~~v~-~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~-~~~~~~i 91 (206)
T PF01852_consen 17 DEDGWKLYKDKKNGDVYYKK-VSPSDSCPIKMFKAEGVVP-ASPEQVVEDLLDDRE--QWDKMCVEAEVLEQ-IDEDTDI 91 (206)
T ss_dssp TCTTCEEEEEETTTCEEEEE-EECSSSTSCEEEEEEEEES-SCHHHHHHHHHCGGG--HHSTTEEEEEEEEE-EETTEEE
T ss_pred CCCCCeEeEccCCCeEEEEE-eCccccccceEEEEEEEEc-CChHHHHHHHHhhHh--hcccchhhheeeee-cCCCCeE
Confidence 46799999988877777663 222222 678999999997 788877777776555 99999999999999 6788999
Q ss_pred EEEEeecCC---CCCceEEEEeeEEEeCCCeEEEEEEeecCCCCCC-CCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEe
Q 015689 183 GRIIKKFPL---LTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPP-QRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQE 258 (402)
Q Consensus 183 vy~v~k~P~---VS~RDFV~~rri~~~~dg~~~Iv~kSVehp~~P~-~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~ 258 (402)
+|++.++|+ +++||||++++++...++.++++.+|++||.+|+ .+|+|||+.+.+||+|+|+ +++.|+|+|+.|+
T Consensus 92 ~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~-~~~~~~vt~~~~~ 170 (206)
T PF01852_consen 92 VYFVMKSPWPGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPL-GDGRTRVTYVSQV 170 (206)
T ss_dssp EEEEEE-CTTTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEE-TTCEEEEEEEEEE
T ss_pred EEEEecccCCCCCCCcEEEEEEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEc-cCCCceEEEEEEE
Confidence 999987764 8999999998777767889999999999999999 9999999999999999999 5557999999999
Q ss_pred cCCCC--hhhHhhhHHhhHHHHHHHHHHHHHhhhh
Q 015689 259 DAGLN--VGMAKLAFAKGIWSYVCKMDNALRNYAV 291 (402)
Q Consensus 259 DpgG~--~wLIN~a~~~g~~~~lkkL~~al~kY~~ 291 (402)
||||+ .|++|+++.++++.++++|++++++|.+
T Consensus 171 D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
T PF01852_consen 171 DPKGWIPSWLVNMVVKSQPPNFLKNLRKALKKQKK 205 (206)
T ss_dssp ESSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred CCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 99999 8999999999999999999999998754
No 16
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=99.97 E-value=2.2e-29 Score=234.70 Aligned_cols=173 Identities=15% Similarity=0.158 Sum_probs=149.1
Q ss_pred CCCCCeEEEecCCcEEEEeeeeccCCC-CCeEEEEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEE
Q 015689 104 ENDKWENVIDKRNNLLYYNARCCKPKV-GPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEI 182 (402)
Q Consensus 104 ~~~~Wklv~ek~gikVyyka~r~~p~~-G~~~yK~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~I 182 (402)
..++|++..+++||+||+|. .+++ .+..||++++++ +++++|++.++| .|.+||+++.++++|++ ++++++|
T Consensus 17 ~~~~W~~~~~~~gi~I~~k~---~~~~~~l~~~K~~~~v~-a~~~~v~~~l~d--~r~~Wd~~~~~~~vie~-id~~~~i 89 (197)
T cd08869 17 KSKGWVSVSSSDHVELAFKK---VDDGHPLRLWRASTEVE-APPEEVLQRILR--ERHLWDDDLLQWKVVET-LDEDTEV 89 (197)
T ss_pred ccCCceEEecCCcEEEEEEe---CCCCCcEEEEEEEEEeC-CCHHHHHHHHHH--HHhccchhhheEEEEEE-ecCCcEE
Confidence 46899999999999999873 3333 477899999997 899999999986 58999999999999999 6888999
Q ss_pred EEEEeecC-CCCCceEEEEeeEE-EeCCCeEEEEEEeecCC-CCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEec
Q 015689 183 GRIIKKFP-LLTPREYVLAWRLW-EGRDQTFYCFSKECDHP-LAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQED 259 (402)
Q Consensus 183 vy~v~k~P-~VS~RDFV~~rri~-~~~dg~~~Iv~kSVehp-~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~D 259 (402)
+|++.+.| ++++||||+.+.+. +.+++.+++..+|++|| .+|+ |+|||..+.+||.|+|+ ++++|+|||+.|+|
T Consensus 90 ~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~--g~VR~~~~~~g~~i~p~-~~~~t~vty~~~~D 166 (197)
T cd08869 90 YQYVTNSMAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPL--GGVRAVVLASRYLIEPC-GSGKSRVTHICRVD 166 (197)
T ss_pred EEEEeeCCCCCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCC--CCEEEEEEeeeEEEEEC-CCCCeEEEEEEEEC
Confidence 99998777 59999999997544 34567888999999996 6666 99999999999999998 55689999999999
Q ss_pred CCCC--hhhHhhhHHhhHHHHHHHHHHHHH
Q 015689 260 AGLN--VGMAKLAFAKGIWSYVCKMDNALR 287 (402)
Q Consensus 260 pgG~--~wLIN~a~~~g~~~~lkkL~~al~ 287 (402)
|||+ .|++|..- ..++.-|++|+.-.+
T Consensus 167 p~G~iP~wl~N~~~-~~~~~~~~~l~~~~~ 195 (197)
T cd08869 167 LRGRSPEWYNKVYG-HLCARELLRIRDSFR 195 (197)
T ss_pred CCCCCCceeecchH-hHHHHHHHHHHhhcc
Confidence 9999 89988765 888899999887543
No 17
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=99.97 E-value=2.8e-29 Score=235.80 Aligned_cols=167 Identities=12% Similarity=0.131 Sum_probs=144.0
Q ss_pred CCCCCeEEEecCCcEEEEeeeeccCCCCCeEEEEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEE
Q 015689 104 ENDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIG 183 (402)
Q Consensus 104 ~~~~Wklv~ek~gikVyyka~r~~p~~G~~~yK~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Iv 183 (402)
++++|++..+++||+||++. .++ ....|+++++++ +++++|++++.|.++|++||+++.++++|++ .++++.|+
T Consensus 20 ~~~gW~l~~~~~gI~Vy~k~---~~~-~~~~~~ge~~v~-as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~-~~~d~~i~ 93 (205)
T cd08874 20 ATAGWSYQCLEKDVVIYYKV---FNG-TYHGFLGAGVIK-APLATVWKAVKDPRTRFLYDTMIKTARIHKT-FTEDICLV 93 (205)
T ss_pred ccCCcEEEecCCCEEEEEec---CCC-CcceEEEEEEEc-CCHHHHHHHHhCcchhhhhHHhhhheeeeee-cCCCeEEE
Confidence 35799999999999999752 233 577899999995 9999999999999999999999999999998 78889999
Q ss_pred EEEeecC-CC--CCceEEEEeeEEEeCCCeEEEEEEeecCCCCCCCC-CeEEEEEeeEEEEEEeeCCC--CceEEEEEEE
Q 015689 184 RIIKKFP-LL--TPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQR-KYVRVTYFRSGWHIKKVPGR--DACEIRIFHQ 257 (402)
Q Consensus 184 y~v~k~P-~V--S~RDFV~~rri~~~~dg~~~Iv~kSVehp~~P~~k-g~VR~e~~~sgwvIrpv~g~--~~~kVt~i~~ 257 (402)
|++...| ++ ++||||+++. +..+++.++|..+|++||.+|+.+ |||||+...+||.|+|++++ +.|++||+.|
T Consensus 94 y~~~~~Pwp~~~~~RDfV~l~~-~~~~~~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q 172 (205)
T cd08874 94 YLVHETPLCLLKQPRDFCCLQV-EAKEGELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQ 172 (205)
T ss_pred EEEecCCCCCCCCCCeEEEEEE-EEECCCcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEE
Confidence 9998766 34 9999999975 445555566888999999999986 99999999999999997433 4799999999
Q ss_pred ecCC-CC--hhhHhhhHHhhHHH
Q 015689 258 EDAG-LN--VGMAKLAFAKGIWS 277 (402)
Q Consensus 258 ~Dpg-G~--~wLIN~a~~~g~~~ 277 (402)
+||| |. .|++|.++..++..
T Consensus 173 ~DPggg~iP~~l~N~~~~~~p~~ 195 (205)
T cd08874 173 VALCGPDVPAQLLSSLSKRQPLV 195 (205)
T ss_pred ECCCCCCCCHHHHhHHHHhccHH
Confidence 9999 56 89999998766544
No 18
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.97 E-value=9.1e-29 Score=223.29 Aligned_cols=175 Identities=25% Similarity=0.355 Sum_probs=158.5
Q ss_pred CCCeEEEecCCcEEEEeeeeccCCCCCeEEEEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEEE
Q 015689 106 DKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRI 185 (402)
Q Consensus 106 ~~Wklv~ek~gikVyyka~r~~p~~G~~~yK~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy~ 185 (402)
++|+++.+++|+++|++ ..+.++...+|++++++ +|++++++++.|.+.|++||+.+.++++|+. .+++..++|+
T Consensus 15 ~~W~~~~~~~~v~vy~~---~~~~~~~~~~k~~~~i~-~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~-~~~~~~i~~~ 89 (193)
T cd00177 15 EGWKLVKEKDGVKIYTK---PYEDSGLKLLKAEGVIP-ASPEQVFELLMDIDLRKKWDKNFEEFEVIEE-IDEHTDIIYY 89 (193)
T ss_pred CCeEEEEECCcEEEEEe---cCCCCCceeEEEEEEEC-CCHHHHHHHHhCCchhhchhhcceEEEEEEE-eCCCeEEEEE
Confidence 58999999999999965 34555788999999998 7999999999999999999999999999999 5677999999
Q ss_pred EeecCC-CCCceEEEEeeEEEeCCCeEEEEEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC-
Q 015689 186 IKKFPL-LTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN- 263 (402)
Q Consensus 186 v~k~P~-VS~RDFV~~rri~~~~dg~~~Iv~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~- 263 (402)
..+.|+ +++||||+++.....+++.++++..|++|+.+|+.+++||++.+.+||+|+|+ +++.|+++++.+.||+|+
T Consensus 90 ~~~~p~p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~-~~~~~~vt~~~~~D~~g~i 168 (193)
T cd00177 90 KTKPPWPVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPL-DPGKTKVTYVLQVDPKGSI 168 (193)
T ss_pred EeeCCCccCCccEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEEC-CCCCEEEEEEEeeCCCCCc
Confidence 998884 99999999987766666889999999999999999999999999999999998 667999999999999999
Q ss_pred -hhhHhhhHHhhHHHHHHHHHHHH
Q 015689 264 -VGMAKLAFAKGIWSYVCKMDNAL 286 (402)
Q Consensus 264 -~wLIN~a~~~g~~~~lkkL~~al 286 (402)
.|++|+++...+..+++.++...
T Consensus 169 P~~~~~~~~~~~~~~~~~~~~~~~ 192 (193)
T cd00177 169 PKSLVNSAAKKQLASFLKDLRKAK 192 (193)
T ss_pred cHHHHHhhhhhccHHHHHHHHHhh
Confidence 89999999999999988877653
No 19
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.96 E-value=5.3e-28 Score=222.44 Aligned_cols=176 Identities=15% Similarity=0.234 Sum_probs=155.9
Q ss_pred CCCCeEEEecCCcEEEEeeeeccCCCCCeEEEEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEE
Q 015689 105 NDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGR 184 (402)
Q Consensus 105 ~~~Wklv~ek~gikVyyka~r~~p~~G~~~yK~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy 184 (402)
+.+|+++++++|++||++. .++++...||++++++ ++|+++++++.|.+.+++||+.+.++++||+ .+++..++|
T Consensus 16 ~~~W~~~~~~~~v~v~~~~---~~~~~~~~~k~~~~i~-~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~-~~~~~~i~~ 90 (195)
T cd08876 16 DGDWQLVKDKDGIKVYTRD---VEGSPLKEFKAVAEVD-ASIEAFLALLRDTESYPQWMPNCKESRVLKR-TDDNERSVY 90 (195)
T ss_pred CCCCEEEecCCCeEEEEEE---CCCCCeEEEEEEEEEe-CCHHHHHHHHhhhHhHHHHHhhcceEEEeec-CCCCcEEEE
Confidence 3569999999999999763 4455668999999997 8999999999999999999999999999999 566689999
Q ss_pred EEeecCC-CCCceEEEEeeEEEeC-CCeEEEEEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCC
Q 015689 185 IIKKFPL-LTPREYVLAWRLWEGR-DQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGL 262 (402)
Q Consensus 185 ~v~k~P~-VS~RDFV~~rri~~~~-dg~~~Iv~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG 262 (402)
...+.|+ +++||||+.++.+... ++.+++...+++|+ +|+++++||+....++|.|+|+ ++++|+++|+.+.||+|
T Consensus 91 ~~~~~p~pvs~Rdfv~~~~~~~~~~~~~~~i~~~s~~~~-~P~~~~~vR~~~~~~~~~i~~~-~~~~t~vt~~~~~dp~g 168 (195)
T cd08876 91 TVIDLPWPVKDRDMVLRSTTEQDADDGSVTITLEAAPEA-LPEQKGYVRIKTVEGQWTFTPL-GNGKTRVTYQAYADPGG 168 (195)
T ss_pred EEEecccccCCceEEEEEEEEEcCCCCEEEEEeecCCcc-CCCCCCeEEceeceeeEEEEEC-CCCeEEEEEEEEeCCCC
Confidence 9888885 9999999987655433 57777888888887 8999999999999999999998 45689999999999999
Q ss_pred C--hhhHhhhHHhhHHHHHHHHHHHHH
Q 015689 263 N--VGMAKLAFAKGIWSYVCKMDNALR 287 (402)
Q Consensus 263 ~--~wLIN~a~~~g~~~~lkkL~~al~ 287 (402)
+ .|++|.++.+.++.++.+|++.++
T Consensus 169 ~iP~~lv~~~~~~~~~~~l~~l~~~~~ 195 (195)
T cd08876 169 SIPGWLANAFAKDAPYNTLENLRKQLK 195 (195)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9 899999999999999999998864
No 20
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=99.96 E-value=5.4e-28 Score=231.01 Aligned_cols=172 Identities=15% Similarity=0.161 Sum_probs=145.5
Q ss_pred cCCCHHHHHHHHHHhhccCCCCCCCeEEEecCCcEEEEeeeeccCCCCCeEEEEEEEeccCCHHHHHHHHhCccchhHHH
Q 015689 84 EIVSDADLKFLIETLEDNFSENDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWD 163 (402)
Q Consensus 84 ~~vsdedl~~ll~llee~~~~~~~Wklv~ek~gikVyyka~r~~p~~G~~~yK~~~viedaspE~V~d~l~D~e~R~kWD 163 (402)
...+...++.|..+. .+++|++..+++||+||++ +.++...||++++++ +++++++++|.|.++|++||
T Consensus 38 ~~~~~~~~~~l~~l~-----~~~~W~l~~~k~gIkVytr-----~~s~~l~fk~e~~vd-~s~~~v~dlL~D~~~R~~WD 106 (235)
T cd08873 38 MYLSYGNVTALKRLA-----AKSDWTVASSTTSVTLYTL-----EQDGVLSFCVELKVQ-TCASDAFDLLSDPFKRPEWD 106 (235)
T ss_pred EEEeeCCHHHHhhcc-----ccCCCEEEEcCCCEEEEEe-----cCCCceEEEEEEEec-CCHHHHHHHHhCcchhhhhh
Confidence 344555555454332 2479999999999999975 256678899999986 99999999999999999999
Q ss_pred hhcceeEEEEEecCCCeEEEEEEeecC-CCCCceEEEEeeEEE-eCC-CeEEEEEEeecCCCCCCCCCeEEEEEeeEEEE
Q 015689 164 KTVVEHKQLQVDKTNGTEIGRIIKKFP-LLTPREYVLAWRLWE-GRD-QTFYCFSKECDHPLAPPQRKYVRVTYFRSGWH 240 (402)
Q Consensus 164 ~~v~e~evLE~~~d~~t~Ivy~v~k~P-~VS~RDFV~~rri~~-~~d-g~~~Iv~kSVehp~~P~~kg~VR~e~~~sgwv 240 (402)
+++.++++|++ ++++..|+|+..++| +++|||||+.+.+++ .++ +.+.|..+|++||.+|+++|||||+...+||.
T Consensus 107 ~~~~e~evI~~-id~d~~iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~ 185 (235)
T cd08873 107 PHGRSCEEVKR-VGEDDGIYHTTMPSLTSEKPNDFVLLVSRRKPATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFV 185 (235)
T ss_pred hcccEEEEEEE-eCCCcEEEEEEcCCCCCCCCceEEEEEEEEeccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEE
Confidence 99999999999 677788889888888 599999999977665 333 44788899999999999999999999999999
Q ss_pred EEeeCCCCceEEEEEEEecCCCChhhHh
Q 015689 241 IKKVPGRDACEIRIFHQEDAGLNVGMAK 268 (402)
Q Consensus 241 Irpv~g~~~~kVt~i~~~DpgG~~wLIN 268 (402)
|+|. +++.|+|+|+.|+|||...++.-
T Consensus 186 I~p~-~~~~t~VtY~~~~dPg~~~~~~~ 212 (235)
T cd08873 186 IRQD-CGTCTEVSYYNETNPKLLSYVTC 212 (235)
T ss_pred EEEC-CCCcEEEEEEEEcCCCccceeee
Confidence 9997 66789999999999998865543
No 21
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.96 E-value=7.7e-28 Score=226.26 Aligned_cols=178 Identities=16% Similarity=0.167 Sum_probs=159.1
Q ss_pred CCCCeEEEecCCcEEEEeeeeccCCCCCeEEEEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEE
Q 015689 105 NDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGR 184 (402)
Q Consensus 105 ~~~Wklv~ek~gikVyyka~r~~p~~G~~~yK~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy 184 (402)
+++|++..+++|+++||+. .++++...+|++++++ ++++.+++++.|.+.+++|++++.+.+.|++ .+.++.++|
T Consensus 21 ~~~W~~~~~~~~i~v~~r~---~~~~~~~~~k~e~~i~-~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~-~~~~~~v~y 95 (215)
T cd08877 21 SDGWTLQKESEGIRVYYKF---EPDGSLLSLRMEGEID-GPLFNLLALLNEVELYKTWVPFCIRSKKVKQ-LGRADKVCY 95 (215)
T ss_pred CCCcEEeccCCCeEEEEEe---CCCCCEEEEEEEEEec-CChhHeEEEEehhhhHhhhcccceeeEEEee-cCCceEEEE
Confidence 5789999999999999873 5555588999999997 7999999999999999999999999999998 677789999
Q ss_pred EEeecCC-CCCceEEEEeeE-EEe-CCCeEEEEEEeecCCC---------CCCCC-CeEEEEEeeEEEEEEeeCCCCceE
Q 015689 185 IIKKFPL-LTPREYVLAWRL-WEG-RDQTFYCFSKECDHPL---------APPQR-KYVRVTYFRSGWHIKKVPGRDACE 251 (402)
Q Consensus 185 ~v~k~P~-VS~RDFV~~rri-~~~-~dg~~~Iv~kSVehp~---------~P~~k-g~VR~e~~~sgwvIrpv~g~~~~k 251 (402)
+..++|+ +++||+|+.... .+. ++|.+++...|++|+. +|+.+ |+||++...+||.|+|+ +++.|.
T Consensus 96 ~~~~~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~-~~~~t~ 174 (215)
T cd08877 96 LRVDLPWPLSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPI-SPTKCY 174 (215)
T ss_pred EEEeCceEecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEc-CCCCeE
Confidence 9999995 999999986332 233 6788889999998765 79998 99999999999999998 566899
Q ss_pred EEEEEEecCCCC---hhhHhhhHHhhHHHHHHHHHHHHHh
Q 015689 252 IRIFHQEDAGLN---VGMAKLAFAKGIWSYVCKMDNALRN 288 (402)
Q Consensus 252 Vt~i~~~DpgG~---~wLIN~a~~~g~~~~lkkL~~al~k 288 (402)
++|+.+.||||+ .|++|.++++.++.++.+|++++++
T Consensus 175 v~~~~~~DP~g~~IP~~liN~~~k~~~~~~~~~l~k~~~~ 214 (215)
T cd08877 175 LRFVANVDPKMSLVPKSLLNFVARKFAGLLFEKIQKAAKN 214 (215)
T ss_pred EEEEEEcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999987 8999999999999999999999875
No 22
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=99.96 E-value=2e-27 Score=226.78 Aligned_cols=172 Identities=16% Similarity=0.199 Sum_probs=143.3
Q ss_pred CCCCeEEEecCCcEEEEeeeeccCCCCCeEEEEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEE
Q 015689 105 NDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGR 184 (402)
Q Consensus 105 ~~~Wklv~ek~gikVyyka~r~~p~~G~~~yK~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy 184 (402)
+++|++..+++||+||++ ++++...||+++.++ +|+++++++|.|.++|++||+++.++++|++ .++++. +|
T Consensus 55 ~~~W~l~~dkdgIkVytr-----~~s~~l~fk~e~~vd-vs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~q-ld~~~~-vY 126 (236)
T cd08914 55 KSGWEVTSTVEKIKIYTL-----EEHDVLSVWVEKHVK-RPAHLAYRLLSDFTKRPLWDPHFLSCEVIDW-VSEDDQ-IY 126 (236)
T ss_pred cCCCEEEEccCCEEEEEe-----cCCCcEEEEEEEEEc-CCHHHHHHHHhChhhhchhHHhhceEEEEEE-eCCCcC-EE
Confidence 479999999999999975 366678999999985 9999999999999999999999999999999 566666 66
Q ss_pred EEeecC--CCCCceEEEEeeEEEeC-CCe-EEEEEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecC
Q 015689 185 IIKKFP--LLTPREYVLAWRLWEGR-DQT-FYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDA 260 (402)
Q Consensus 185 ~v~k~P--~VS~RDFV~~rri~~~~-dg~-~~Iv~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~Dp 260 (402)
++++.| ++++||||+.+..+... ++. +.|..+|++||.+|+.+||||++.+..||.|+|+ +++.|+|+|+.|+||
T Consensus 127 ~~~~pPw~Pvk~RD~V~~~s~~~~~~dg~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~~I~pl-~~~~~~VtY~~~~dP 205 (236)
T cd08914 127 HITCPIVNNDKPKDLVVLVSRRKPLKDGNTYVVAVKSVILPSVPPSPQYIRSEIICAGFLIHAI-DSNSCTVSYFNQISA 205 (236)
T ss_pred EEecCCCCCCCCceEEEEEEEEecCCCCCEEEEEEeecccccCCCCCCcEEeEEEEEEEEEEEc-CCCcEEEEEEEEcCC
Confidence 677766 48999999987665444 554 7788999999999999999999999999999997 667999999999999
Q ss_pred CCC--hhhHhhh-HHhhHHHHHHHHHHHHHhhh
Q 015689 261 GLN--VGMAKLA-FAKGIWSYVCKMDNALRNYA 290 (402)
Q Consensus 261 gG~--~wLIN~a-~~~g~~~~lkkL~~al~kY~ 290 (402)
|+ .|.+|.+ ..+++...+ ++|.+|.
T Consensus 206 -g~lp~~~~n~~~~~~~~~~~~----~~~~~~~ 233 (236)
T cd08914 206 -SILPYFAGNLGGWSKSIEETA----ASCIQFL 233 (236)
T ss_pred -ccchheEEecchhhhHHHHHH----HHHHHHH
Confidence 66 7888853 344444444 4444443
No 23
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=99.95 E-value=5.1e-27 Score=225.24 Aligned_cols=163 Identities=16% Similarity=0.175 Sum_probs=138.7
Q ss_pred CCCCeEEEecCCcEEEEeeeeccCCCCCeEEEEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEE
Q 015689 105 NDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGR 184 (402)
Q Consensus 105 ~~~Wklv~ek~gikVyyka~r~~p~~G~~~yK~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy 184 (402)
+++|++.++++||+||++ +.+....||+++.++ +++++++++|.|.++|++||+++.++++|++ ++++.. +|
T Consensus 58 ~~~W~l~~~~~gI~Vyt~-----~~s~~~~fK~e~~vd-~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~-id~~~~-vY 129 (240)
T cd08913 58 KDNWVLSSEKNQVRLYTL-----EEDKFLSFKVEMVVH-VDAAQAFLLLSDLRRRPEWDKHYRSCELVQQ-VDEDDA-IY 129 (240)
T ss_pred cCCCEEEEccCCEEEEEE-----eCCCccEEEEEEEEc-CCHHHHHHHHhChhhhhhhHhhccEEEEEEe-cCCCcE-EE
Confidence 468999999999999974 234456899999886 9999999999999999999999999999999 566554 57
Q ss_pred EEeecC---CCCCceEEEEeeEEEe-CC-CeEEEEEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEec
Q 015689 185 IIKKFP---LLTPREYVLAWRLWEG-RD-QTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQED 259 (402)
Q Consensus 185 ~v~k~P---~VS~RDFV~~rri~~~-~d-g~~~Iv~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~D 259 (402)
.+...| ++++||||+++.+... ++ +.|+|..+++.||++|+++|||||+...+||+|+|. +++.|+++|+.|+|
T Consensus 130 ~v~~~p~~~pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~-~~~~t~vtY~~~~d 208 (240)
T cd08913 130 HVTSPSLSGHGKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEE-SDQLTKVSYYNQAT 208 (240)
T ss_pred EEecCCCCCCCCCCeEEEEEEEEeccCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEEC-CCCcEEEEEEEEeC
Confidence 666444 5899999999766443 33 356678899999999999999999999999999997 66689999999999
Q ss_pred CCCC--hhhHhhhHHhhHHH
Q 015689 260 AGLN--VGMAKLAFAKGIWS 277 (402)
Q Consensus 260 pgG~--~wLIN~a~~~g~~~ 277 (402)
|| . .|++|.++...+..
T Consensus 209 PG-~LP~~~~N~~~~~~p~~ 227 (240)
T cd08913 209 PG-VLPYISTDIAGLSSEFY 227 (240)
T ss_pred Cc-cccHHHhhhhhhccchh
Confidence 97 7 89999988876654
No 24
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.95 E-value=3.1e-26 Score=213.50 Aligned_cols=173 Identities=15% Similarity=0.158 Sum_probs=152.0
Q ss_pred CCCCCCeEEEecCCcEEEEeeeeccCCCC--CeEEEEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCe
Q 015689 103 SENDKWENVIDKRNNLLYYNARCCKPKVG--PLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGT 180 (402)
Q Consensus 103 ~~~~~Wklv~ek~gikVyyka~r~~p~~G--~~~yK~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t 180 (402)
+...||....+++|+.|+||+ .++| +..+|+.+.|++.|++.+.+++.| |..||+++.+.++||. +++++
T Consensus 24 ek~kgW~~~~~~~~vev~~kk----~~d~~~l~lwk~s~ei~~~p~~vl~rvL~d---R~~WD~~m~e~~~Ie~-Ld~n~ 95 (205)
T cd08907 24 ERFKGWHSAPGPDNTELACKK----VGDGHPLRLWKVSTEVEAPPSVVLQRVLRE---RHLWDEDLLHSQVIEA-LENNT 95 (205)
T ss_pred hccCCceeecCCCCcEEEEEe----CCCCCceEEEEEEEEecCCCHHHHHHHhhc---hhhhhHHHHhhhhhee-ecCCC
Confidence 446899999999999999973 4444 678999999999999999999998 9999999999999999 78999
Q ss_pred EEEEEEeecC-CCCCceEEEEeeEE-EeCCCeEEEEEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEe
Q 015689 181 EIGRIIKKFP-LLTPREYVLAWRLW-EGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQE 258 (402)
Q Consensus 181 ~Ivy~v~k~P-~VS~RDFV~~rri~-~~~dg~~~Iv~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~ 258 (402)
+|+|++.+.| ++.+||||.+|.++ ..+.|.++|++.||+|+++|+.+| |||..+.+||.|+|. |.++|++||+.+.
T Consensus 96 dI~yY~~~~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~g-VRa~~l~sgYlIep~-g~g~s~ltyi~rv 173 (205)
T cd08907 96 EVYHYVTDSMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAG-VRAVLLTSQYLIEPC-GMGRSRLTHICRA 173 (205)
T ss_pred EEEEEEecCCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCC-eEEEEEeccEEEEEC-CCCCeEEEEEEEe
Confidence 9999998766 79999999997643 234567999999999999999999 999999999999997 6678999999999
Q ss_pred cCCCC--hhhHhhhHHhhHHHHHHHHHHHH
Q 015689 259 DAGLN--VGMAKLAFAKGIWSYVCKMDNAL 286 (402)
Q Consensus 259 DpgG~--~wLIN~a~~~g~~~~lkkL~~al 286 (402)
||+|. .|. |.+....+-.-+.+|+.-.
T Consensus 174 D~rG~~P~Wy-nk~~g~~~a~~l~~ir~sF 202 (205)
T cd08907 174 DLRGRSPDWY-NKVFGHLCAMEVARIRDSF 202 (205)
T ss_pred CCCCCCcHHH-HHhHHHHHHHHHHHHHhhc
Confidence 99999 788 9888888888887777654
No 25
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.94 E-value=2.4e-25 Score=209.05 Aligned_cols=172 Identities=15% Similarity=0.131 Sum_probs=145.2
Q ss_pred CCCCeEEEecCCcEEEEeeeeccCCCCCeEEEEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEE
Q 015689 105 NDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGR 184 (402)
Q Consensus 105 ~~~Wklv~ek~gikVyyka~r~~p~~G~~~yK~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy 184 (402)
-.+|..+...++..++|++ ..+++++..+|+.+.++ ++|++|++.+.+ .|.+||.++.+.+++|+ .+++++|+|
T Consensus 26 fk~w~~~~~~~~~e~~ykK--~~d~~~lk~~r~~~ei~-~~p~~VL~~vl~--~R~~WD~~~~~~~~ie~-ld~~tdi~~ 99 (205)
T cd08909 26 FKGWISCSSSDNTELAYKK--VGDGNPLRLWKVSVEVE-APPSVVLNRVLR--ERHLWDEDFLQWKVVET-LDKQTEVYQ 99 (205)
T ss_pred hcCCcccCCcCCeEEEEec--CCCCCceEEEEEEEEeC-CCHHHHHHHHHh--hHhhHHhhcceeEEEEE-eCCCcEEEE
Confidence 4689999889999999873 34445688999999998 788888888866 79999999999999999 688899999
Q ss_pred EEeecC-CCCCceEEEEeeEEE-eCCCeEEEEEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCC
Q 015689 185 IIKKFP-LLTPREYVLAWRLWE-GRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGL 262 (402)
Q Consensus 185 ~v~k~P-~VS~RDFV~~rri~~-~~dg~~~Iv~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG 262 (402)
+..+.| |+++||||++|+++. .++|.|+|+.+|++|+++|+. |+|||....+||.|+|. ++++|+|+|+.++||||
T Consensus 100 y~~~~~~P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~~-g~VRa~~~~~gylI~P~-~~g~trvt~i~~vDpkG 177 (205)
T cd08909 100 YVLNCMAPHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPLL-GGVRAVVLDSQYLIEPC-GSGKSRLTHICRVDLKG 177 (205)
T ss_pred EEeecCCCCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCCC-CcEEEEEEcCcEEEEEC-CCCCEEEEEEEEecCCC
Confidence 887555 699999999987653 357889999999999999985 99999999999999998 55689999999999999
Q ss_pred C--hhhHhhhHHhhHHHHHHHHHHH
Q 015689 263 N--VGMAKLAFAKGIWSYVCKMDNA 285 (402)
Q Consensus 263 ~--~wLIN~a~~~g~~~~lkkL~~a 285 (402)
+ .|++|.+ .+.+-..+.+|+..
T Consensus 178 ~~P~W~~n~~-g~~~~~~~~~~r~s 201 (205)
T cd08909 178 HSPEWYNKGF-GHLCAAEAARIRNS 201 (205)
T ss_pred CChHHHHHhH-HHHHHHHHHHHHhh
Confidence 9 8999864 55565666666554
No 26
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=99.93 E-value=1.4e-24 Score=203.82 Aligned_cols=184 Identities=16% Similarity=0.177 Sum_probs=150.9
Q ss_pred HHHHHHHHHhhccCCCCCCCeEEEecCCcEEEEeeeeccCCCCCeEEEEEEEeccCCHHHHHHHHhCccchhHHHhhcce
Q 015689 89 ADLKFLIETLEDNFSENDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVE 168 (402)
Q Consensus 89 edl~~ll~llee~~~~~~~Wklv~ek~gikVyyka~r~~p~~G~~~yK~~~viedaspE~V~d~l~D~e~R~kWD~~v~e 168 (402)
+-+++++.+..++ -.+|..+...+++.+.+++ ..+++++..+|+++.|+ +++++|++.+.|. |.+||+++.+
T Consensus 13 ~~~~~l~~e~~~k---~k~w~~~~~~~~~el~~~k--~~~gs~l~~~r~~~~i~-a~~~~vl~~lld~--~~~Wd~~~~e 84 (204)
T cd08908 13 DCVDGLFKEVKEK---FKGWVSYSTSEQAELSYKK--VSEGPPLRLWRTTIEVP-AAPEEILKRLLKE--QHLWDVDLLD 84 (204)
T ss_pred HHHHHHHHHHHHH---hcCCcccCCCCcEEEEEec--cCCCCCcEEEEEEEEeC-CCHHHHHHHHHhh--HHHHHHHhhh
Confidence 3344444444443 4689998888999999873 34445588999999998 8999999999887 9999999999
Q ss_pred eEEEEEecCCCeEEEEEEeecC-CCCCceEEEEeeEE-EeCCCeEEEEEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCC
Q 015689 169 HKQLQVDKTNGTEIGRIIKKFP-LLTPREYVLAWRLW-EGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPG 246 (402)
Q Consensus 169 ~evLE~~~d~~t~Ivy~v~k~P-~VS~RDFV~~rri~-~~~dg~~~Iv~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g 246 (402)
.++|++ .+++++|+|++.+.| ++++||||..|.+. +.+++.+++...|++|+.+|+. +|||....++|.|+|. +
T Consensus 85 ~~vIe~-ld~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~--~VR~~~~~~~w~i~P~-g 160 (204)
T cd08908 85 SKVIEI-LDSQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKGACALLATSVDHDRAPVA--GVRVNVLLSRYLIEPC-G 160 (204)
T ss_pred eEeeEe-cCCCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCCcC--ceEEEEEeeEEEEEEC-C
Confidence 999999 688899999998888 59999999996543 3467888889999999999966 7999999999999997 6
Q ss_pred CCceEEEEEEEecCCCC--hhhHhhhHHhhHHHHHHHHHHH
Q 015689 247 RDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNA 285 (402)
Q Consensus 247 ~~~~kVt~i~~~DpgG~--~wLIN~a~~~g~~~~lkkL~~a 285 (402)
+++|++||+.|+||||. .|++|.+ .+.+-..+.+|+.-
T Consensus 161 ~g~t~vtyi~~~DPgG~iP~W~~N~~-g~~~~~~~~~~r~s 200 (204)
T cd08908 161 SGKSKLTYMCRIDLRGHMPEWYTKSF-GHLCAAEVVKIRDS 200 (204)
T ss_pred CCcEEEEEEEEeCCCCCCcHHHHhhH-HHHHHHHHHHHHhh
Confidence 67899999999999999 8999975 45555555555544
No 27
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=99.92 E-value=7.4e-24 Score=225.55 Aligned_cols=183 Identities=17% Similarity=0.200 Sum_probs=149.1
Q ss_pred CCCCCeEEEecCCcEEEEeeeeccCC---CC-CeEEEEEEEeccCCHHHHHHHHhCcc-chhHHHhhcceeEEEEEecCC
Q 015689 104 ENDKWENVIDKRNNLLYYNARCCKPK---VG-PLKYLSVTVFENCTPEILRDFYMDND-YRVRWDKTVVEHKQLQVDKTN 178 (402)
Q Consensus 104 ~~~~Wklv~ek~gikVyyka~r~~p~---~G-~~~yK~~~viedaspE~V~d~l~D~e-~R~kWD~~v~e~evLE~~~d~ 178 (402)
+...|+++.-.+|..++... .+.+ .+ ...+|++++++ ++||+|++++++.+ .|.+||.++.++++||+ +++
T Consensus 196 ~~~~Wr~~~c~NGlRiF~e~--~~~~~~~~~~~~~mKavGVV~-aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~-ID~ 271 (719)
T PLN00188 196 SRKHWRLLQCQNGLRIFEEL--LEVDYLPRSCSRAMKAVGVVE-ATCEEIFELVMSMDGTRFEWDCSFQYGSLVEE-VDG 271 (719)
T ss_pred ccCCeEEEEeeccceeehhh--hccccccccCCceeEEEEEec-CCHHHHHHHHhccCcccccchhcccceEEEEE-ecC
Confidence 35689999999999998432 1111 11 46789999997 99999999998765 99999999999999999 799
Q ss_pred CeEEEEEEee---cC-CCCCceEEEEeeEEEeCCCeEEEEEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCC---CceE
Q 015689 179 GTEIGRIIKK---FP-LLTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGR---DACE 251 (402)
Q Consensus 179 ~t~Ivy~v~k---~P-~VS~RDFV~~rri~~~~dg~~~Iv~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~---~~~k 251 (402)
+++|+|...+ +| ++++||||+.|++.+.+||+|+|+.+|++||.+|+++|||||++..|||+|.|++.+ ++|.
T Consensus 272 htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~l 351 (719)
T PLN00188 272 HTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQ 351 (719)
T ss_pred CeEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceE
Confidence 9999997764 34 589999999999889999999999999999999999999999999999999998644 5899
Q ss_pred EEEEEEecCCCC--hhhHhhhHHhhHHHHHHHHHHHHHhhhhh
Q 015689 252 IRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALRNYAVV 292 (402)
Q Consensus 252 Vt~i~~~DpgG~--~wLIN~a~~~g~~~~lkkL~~al~kY~~~ 292 (402)
|+++.|+|++|| .+.-+ ..+.+.--|-+-.++|++|-.+
T Consensus 352 v~~~lqtDlkGW~~~y~~s--~~~~~~l~mL~~VAgLrE~~~~ 392 (719)
T PLN00188 352 VQHLMQIDLKGWGVGYIPS--FQQHCLLQMLNSVAGLREWFSQ 392 (719)
T ss_pred EEEEEEEccCccccccCcc--ccccchHHHHHHHHHHHHHHhc
Confidence 999999999999 34322 2233333344444667766554
No 28
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=99.59 E-value=6.9e-15 Score=150.07 Aligned_cols=201 Identities=11% Similarity=0.149 Sum_probs=152.8
Q ss_pred cCCCHHHHHHHHHHhhccCCCCCCCeEEEecCCcEEEEeeeeccCCCCCe--EEEEEEEeccCCHHHHHHHHhCccchhH
Q 015689 84 EIVSDADLKFLIETLEDNFSENDKWENVIDKRNNLLYYNARCCKPKVGPL--KYLSVTVFENCTPEILRDFYMDNDYRVR 161 (402)
Q Consensus 84 ~~vsdedl~~ll~llee~~~~~~~Wklv~ek~gikVyyka~r~~p~~G~~--~yK~~~viedaspE~V~d~l~D~e~R~k 161 (402)
...+++-+..-+.-..+...+.++|+++.++..+++|. |...++|.. -.|+.-.+.++++.++..+++|.++|.+
T Consensus 381 ~~~~~~~~~~~~~~~~~~~g~d~nwqlFaeegemkmy~---re~eeng~~~Dplka~hav~gvta~e~chyf~~~~~rnd 457 (611)
T KOG1739|consen 381 SSQVEEMVQNHMTYSLQDVGGDANWQLFAEEGEMKMYR---REVEENGIVLDPLKATHAVKGVTAHEVCHYFWNVDVRND 457 (611)
T ss_pred hHHHHHHHHhhhhhhcccccccchhhhhcccCCccccc---eeeccCCcccCccccchhhcchhHHHHHHHHcChhhhcc
Confidence 34444444433322222223445699999999999994 445566632 4577777788999999999999999999
Q ss_pred HHhhcceeEEEEEecCCCeEEEEEEeecC-CCCCceEEEEeeEEEe------CCCeEEEEEEeecCCCCCCCCCeEEEEE
Q 015689 162 WDKTVVEHKQLQVDKTNGTEIGRIIKKFP-LLTPREYVLAWRLWEG------RDQTFYCFSKECDHPLAPPQRKYVRVTY 234 (402)
Q Consensus 162 WD~~v~e~evLE~~~d~~t~Ivy~v~k~P-~VS~RDFV~~rri~~~------~dg~~~Iv~kSVehp~~P~~kg~VR~e~ 234 (402)
|+.+++.+.++|. +.+++-|+|+.-|-- |.++||-.++.++++. +.+.+++++.+++|.++|-.+..||+..
T Consensus 458 wettle~~~vve~-is~d~~~~~qthkrvwpasqrd~lf~shirki~~~~e~gad~wivcn~s~~~a~~pl~n~cvr~~l 536 (611)
T KOG1739|consen 458 WETTLENFHVVET-ISDDAIIIYQTHKRVWPASQRDVLFLSHIRKIPALTENGADTWIVCNFSVDHASAPLNNRCVRAKL 536 (611)
T ss_pred hhhhhhhceeeee-ecCCeEEEEecccccCCCCcchhHHHHHHhhcccccCCCCceEEEecCccccccCccCCceEEEee
Confidence 9999999999999 788888888765432 4799999888766542 2245556679999999999999999998
Q ss_pred eeEEEEEEeeCC---C-------CceEEEEEEEecCCCC--hhhHhhhHHhhHHHHHHHHHHHHHh
Q 015689 235 FRSGWHIKKVPG---R-------DACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALRN 288 (402)
Q Consensus 235 ~~sgwvIrpv~g---~-------~~~kVt~i~~~DpgG~--~wLIN~a~~~g~~~~lkkL~~al~k 288 (402)
..+.-+=.-++. + -.|+++|+.+.+|||| ......+.++..|.|++..-..+.+
T Consensus 537 tv~micqt~v~~p~~~q~l~rdd~~ckityvs~vnpggwapasalravykreypkflkrft~yv~~ 602 (611)
T KOG1739|consen 537 TVAMICQTLVSPPEGNQELSRDDILCKITYVSNVNPGGWAPASALRAVYKREYPKFLKRFTSYVQE 602 (611)
T ss_pred eeeeeeecccCCcccCCcccccceeEEEEEEeeeCCCCcccHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 776555443321 1 1799999999999999 7888999999999999888877765
No 29
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=99.49 E-value=1.7e-12 Score=123.86 Aligned_cols=193 Identities=17% Similarity=0.196 Sum_probs=145.4
Q ss_pred CHHHHHHHHHHhhccCCCCCCCeEEEecC----CcEEEEeeeeccCC----CC--CeEEEEEEEeccCCHHHHHHHHhCc
Q 015689 87 SDADLKFLIETLEDNFSENDKWENVIDKR----NNLLYYNARCCKPK----VG--PLKYLSVTVFENCTPEILRDFYMDN 156 (402)
Q Consensus 87 sdedl~~ll~llee~~~~~~~Wklv~ek~----gikVyyka~r~~p~----~G--~~~yK~~~viedaspE~V~d~l~D~ 156 (402)
.++.+++|+.+++.. +..|....+.+ |..=|.+. ..... .| .-.=|..+.+. ..+..+.++++|.
T Consensus 8 A~~am~Ell~~a~~~---~plWi~~~~~~~~~l~~dey~~~-f~~~~~~~~~~~~~eASR~~glV~-m~~~~lVe~lmD~ 82 (229)
T cd08875 8 AEEAMDELLKLAQGG---EPLWIKSPGMKPEILNPDEYERM-FPRHGGSKPGGFTTEASRACGLVM-MNAIKLVEILMDV 82 (229)
T ss_pred HHHHHHHHHHHhccC---CCCceecCCCCccccCHHHHhhc-ccCcCCCCCCCCeEEEEeeeEEEe-cCHHHHHHHHhCh
Confidence 357788888777653 46798754432 22222110 00011 11 12335566665 8999999999998
Q ss_pred cchhH-HHhhcceeEEEEEecCCC--------eEEEEEEeecC--CCCCceEEEEeeEEEeCCCeEEEEEEeecCC-CCC
Q 015689 157 DYRVR-WDKTVVEHKQLQVDKTNG--------TEIGRIIKKFP--LLTPREYVLAWRLWEGRDQTFYCFSKECDHP-LAP 224 (402)
Q Consensus 157 e~R~k-WD~~v~e~evLE~~~d~~--------t~Ivy~v~k~P--~VS~RDFV~~rri~~~~dg~~~Iv~kSVehp-~~P 224 (402)
+...+ ++..+...++++.. ..| .+++|.....| ++.+|||+.+|++.+.+||.+.|+..|+++. ..|
T Consensus 83 ~kW~~~Fp~iv~~a~tl~vi-stg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~~p 161 (229)
T cd08875 83 NKWSELFPGIVSKAKTLQVI-STGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQTAP 161 (229)
T ss_pred hhhhhhhhhhcceeeEEEEe-eCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeecccccCC
Confidence 76666 66689999999884 333 57888777666 5899999999999999999999999999988 678
Q ss_pred CCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC------hhhHhhhHHhhHHHHHHHHHHHH
Q 015689 225 PQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN------VGMAKLAFAKGIWSYVCKMDNAL 286 (402)
Q Consensus 225 ~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~------~wLIN~a~~~g~~~~lkkL~~al 286 (402)
..++++|++..+|||.|+|.+ ++.|+|||+-|+|..-+ ..+++.++..|.--++..|...|
T Consensus 162 ~~~~~~r~~~~PSGcLIq~~~-nG~SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw~a~lqRqc 228 (229)
T cd08875 162 PPASFVRCRRLPSGCLIQDMP-NGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQC 228 (229)
T ss_pred CCCCccEEEEecCcEEEEECC-CCceEEEEEEEEeccCCcccccchhhhhhhHHHHHHHHHHHHHHhc
Confidence 889999999999999999984 45899999999996654 68899999999998888777665
No 30
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=99.47 E-value=4.2e-12 Score=119.95 Aligned_cols=122 Identities=21% Similarity=0.223 Sum_probs=96.3
Q ss_pred ccchhHHHhhcc--eeEEEEEecCCCe----EEEEEEeecC-CCCCceEEEEee-EEEeC-CCeEEEEEEeecCCCCC-C
Q 015689 156 NDYRVRWDKTVV--EHKQLQVDKTNGT----EIGRIIKKFP-LLTPREYVLAWR-LWEGR-DQTFYCFSKECDHPLAP-P 225 (402)
Q Consensus 156 ~e~R~kWD~~v~--e~evLE~~~d~~t----~Ivy~v~k~P-~VS~RDFV~~rr-i~~~~-dg~~~Iv~kSVehp~~P-~ 225 (402)
.++-++|.+.+. ++++|+. .+++. .|+|...++| ++++||||.+.. .++.+ .+.++++..+++|+.+| +
T Consensus 62 ~~~E~~~i~~v~~~~~~~l~~-~~~~~~~~~~v~~~~~~~P~Pl~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~ 140 (208)
T cd08864 62 TEYEKEYVHEIGAYDLEPVEV-DGEGDGVVTYLVQLTYKFPFPLSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESL 140 (208)
T ss_pred HhhhhhchhhhccceeEEeee-cCCCccceEEEEEEEEECCCCCCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCcc
Confidence 567779999999 8999998 44455 7888888999 599999999976 34433 15688899999999999 8
Q ss_pred CCCeEEEEEeeEEEEEE--eeC--CCCceEEEEEEEecCCCC--hhhHhhhHHhhHHHHH
Q 015689 226 QRKYVRVTYFRSGWHIK--KVP--GRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYV 279 (402)
Q Consensus 226 ~kg~VR~e~~~sgwvIr--pv~--g~~~~kVt~i~~~DpgG~--~wLIN~a~~~g~~~~l 279 (402)
.+++|||. |.++..++ |.. +...++++|..+.||||+ .||+|+++++++-.=+
T Consensus 141 ~~~~Vr~~-y~SgE~~~~~p~~~~~~~~vew~maT~sDpGG~IP~wl~n~~~p~aI~~Dv 199 (208)
T cd08864 141 YENAVLGR-YASVEKISYLPDADGKSNKVEWIMATRSDAGGNIPRWLTKLTIPKAIAKDV 199 (208)
T ss_pred CCCcEEEE-EEEEEEEEEcCccCCCcCCEEEEEEEeeCCCCcCcHHHHhccCchHHHHhH
Confidence 99999999 67775555 541 233677777779999999 8999998887776544
No 31
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.20 E-value=4.8e-10 Score=97.23 Aligned_cols=133 Identities=13% Similarity=0.151 Sum_probs=103.3
Q ss_pred EEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeCCCeEEEEEE
Q 015689 137 SVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCFSK 216 (402)
Q Consensus 137 ~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~dg~~~Iv~k 216 (402)
....++ +|+++|++++.|.+..++|.+.+.+.++++.. + +...+++..++|. ..|+|+....+ . .++. +...
T Consensus 3 ~s~~i~-ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~-~-~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~--i~~~ 74 (138)
T cd07813 3 KSRLVP-YSAEQMFDLVADVERYPEFLPWCTASRVLERD-E-DELEAELTVGFGG-IRESFTSRVTL-V-PPES--IEAE 74 (138)
T ss_pred EEEEcC-CCHHHHHHHHHHHHhhhhhcCCccccEEEEcC-C-CEEEEEEEEeecc-ccEEEEEEEEe-c-CCCE--EEEE
Confidence 345565 99999999999999999999999999999973 3 4556666666664 68999875443 2 2343 2334
Q ss_pred eecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC--hhhHhhhHHhhHHHHHHHHHHHHHh
Q 015689 217 ECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALRN 288 (402)
Q Consensus 217 SVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~--~wLIN~a~~~g~~~~lkkL~~al~k 288 (402)
+++. +.....+.|.|+|+ ++++|+|+|..+.||+|+ .||+|.++.+.+...++.+++.|++
T Consensus 75 ~~~g----------~~~~~~g~w~~~p~-~~~~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~~~~ 137 (138)
T cd07813 75 LVDG----------PFKHLEGEWRFKPL-GENACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAFEKRAKQ 137 (138)
T ss_pred ecCC----------ChhhceeEEEEEEC-CCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4422 23346789999998 446899999999999998 8999999999999999999988864
No 32
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.01 E-value=2.6e-08 Score=86.40 Aligned_cols=137 Identities=9% Similarity=0.103 Sum_probs=92.1
Q ss_pred EEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEEEEeecCC--CCCceEEEEeeEEEeCC-CeEE
Q 015689 136 LSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPL--LTPREYVLAWRLWEGRD-QTFY 212 (402)
Q Consensus 136 K~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy~v~k~P~--VS~RDFV~~rri~~~~d-g~~~ 212 (402)
++...|+ +||++|++++.|.+..++|.+.+.++++|+. . ++...+++....++ ..-+.-+.. ++...++ +. .
T Consensus 2 ~~~~~i~-a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~-~ 76 (144)
T cd08866 2 VARVRVP-APPETVWAVLTDYDNLAEFIPNLAESRLLER-N-GNRVVLEQTGKQGILFFKFEARVVL-ELREREEFPR-E 76 (144)
T ss_pred eEEEEEC-CCHHHHHHHHhChhhHHhhCcCceEEEEEEc-C-CCEEEEEEeeeEEEEeeeeeEEEEE-EEEEecCCCc-e
Confidence 4566776 9999999999999999999999999999987 2 33444554322221 000111111 1111111 11 1
Q ss_pred EEEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC--hhhHhhhHHhhHHHHHHHHHHHHH
Q 015689 213 CFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALR 287 (402)
Q Consensus 213 Iv~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~--~wLIN~a~~~g~~~~lkkL~~al~ 287 (402)
+....++ |. ...+.+.|.++|.+++++|+++|..+.||++. .+++|.++...+...++.|++.+.
T Consensus 77 i~~~~~~--------g~--~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l~~lr~~ae 143 (144)
T cd08866 77 LDFEMVE--------GD--FKRFEGSWRLEPLADGGGTLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNLLAIRAEAE 143 (144)
T ss_pred EEEEEcC--------Cc--hhceEEEEEEEECCCCCeEEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111111 11 13568999999984425899999999999988 899999999999999999998875
No 33
>PF11274 DUF3074: Protein of unknown function (DUF3074)
Probab=99.01 E-value=2.4e-08 Score=92.84 Aligned_cols=136 Identities=24% Similarity=0.317 Sum_probs=109.6
Q ss_pred cCCHHHHHHHHhC--ccchhHHHhhcceeEEEEEec--------CCCe-EEEEEEeecC-CCCCceEEEEeeEEEeC---
Q 015689 143 NCTPEILRDFYMD--NDYRVRWDKTVVEHKQLQVDK--------TNGT-EIGRIIKKFP-LLTPREYVLAWRLWEGR--- 207 (402)
Q Consensus 143 daspE~V~d~l~D--~e~R~kWD~~v~e~evLE~~~--------d~~t-~Ivy~v~k~P-~VS~RDFV~~rri~~~~--- 207 (402)
+++-+++.+.|.+ .++-+++.+.+...+.|+... .+++ .+.+...++| ++++|||+.+.......
T Consensus 13 ~~~~~~~~~~L~~~h~e~E~~yi~~i~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~kfp~pl~~R~F~~Lvit~~~~~~~ 92 (184)
T PF11274_consen 13 GASFDEFRKGLKDEHSENEKEYIPGIGSVERLERWDVDDGGGGWGDGTMEVWQLSYKFPGPLSPRVFVVLVITADLPSKT 92 (184)
T ss_pred CCCHHHHHHHHHhhhHHHHHHhccccceEEEEEEeccccCCcccccceEEEEEEEeECCCCCCCcEEEEEEEEeccCccc
Confidence 6888999999854 677888999999999998831 2334 4444556999 69999999997665443
Q ss_pred ------CCeEEEEEEeecCCCCCCCCCeEEEEEeeEEEEEEeeC------CCCceEEEEEEEecCCCC--hhhHhhhHHh
Q 015689 208 ------DQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVP------GRDACEIRIFHQEDAGLN--VGMAKLAFAK 273 (402)
Q Consensus 208 ------dg~~~Iv~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~------g~~~~kVt~i~~~DpgG~--~wLIN~a~~~ 273 (402)
...++++...++|+..|+.+++|||. |.|-=.|+.++ +.+..+-+|.+..||||+ .||.++.++.
T Consensus 93 ~~~~~~~~~f~vVs~P~~~~~~~~~~~~V~g~-Y~SVE~ire~p~~~~~~~~~~veW~MaT~SdaGG~IP~w~q~~~~p~ 171 (184)
T PF11274_consen 93 EDDSTGPREFMVVSIPVDHPDSPPRKGYVRGQ-YESVERIRELPDTKDDDEEGPVEWIMATRSDAGGSIPRWMQEMGTPG 171 (184)
T ss_pred cCCCCCCCeEEEEEEEcCCcccCCCCCCEEEE-EEEEEEEEEccCCCCCCCCCcEEEEEEEeeCCCCcccHHHHhccCcH
Confidence 46889999999999999999999996 88888888873 445899999999999999 8999997776
Q ss_pred hHHHHH
Q 015689 274 GIWSYV 279 (402)
Q Consensus 274 g~~~~l 279 (402)
++..=+
T Consensus 172 ~Ia~DV 177 (184)
T PF11274_consen 172 AIAKDV 177 (184)
T ss_pred HHHHHH
Confidence 665533
No 34
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.86 E-value=1.4e-07 Score=80.63 Aligned_cols=134 Identities=13% Similarity=0.099 Sum_probs=92.8
Q ss_pred EEEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCe-EEEEEEeecCCCCCceEEEEeeEEEeCCCeEEE
Q 015689 135 YLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGT-EIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYC 213 (402)
Q Consensus 135 yK~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t-~Ivy~v~k~P~VS~RDFV~~rri~~~~dg~~~I 213 (402)
+.....++ +|+++|++++.|.+...+|.+.+.++++++.. +.+. ...+.....+.+.. +|+.... + .++.. +
T Consensus 4 v~~s~~i~-ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~-~-~~~~~--i 76 (140)
T cd07819 4 VSREFEIE-APPAAVMDVLADVEAYPEWSPKVKSVEVLLRD-NDGRPEMVRIGVGAYGIKD-TYALEYT-W-DGAGS--V 76 (140)
T ss_pred EEEEEEEe-CCHHHHHHHHhChhhhhhhCcceEEEEEeccC-CCCCEEEEEEEEeeeeEEE-EEEEEEE-E-cCCCc--E
Confidence 44455665 99999999999999999999999999998762 3332 23343333333333 5554321 1 22222 2
Q ss_pred EEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC--hhhHhhhHHhhHHHHHHHHHHHH
Q 015689 214 FSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNAL 286 (402)
Q Consensus 214 v~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~--~wLIN~a~~~g~~~~lkkL~~al 286 (402)
..+..+. .+...+.+.|.++|. ++ +|+|+|..+.|+++. .++++.+.+.....++++|++.+
T Consensus 77 ~~~~~~~---------~~~~~~~~~~~~~~~-~~-~t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (140)
T cd07819 77 SWTLVEG---------EGNRSQEGSYTLTPK-GD-GTRVTFDLTVELTVPLPGFLKRKAEPLVLDEALKGLKKRV 140 (140)
T ss_pred EEEEecc---------cceeEEEEEEEEEEC-CC-CEEEEEEEEEEecCCCCHHHHHHhhhHHHHHHHHhHhhhC
Confidence 3333322 133345678999997 43 799999999999998 89999999999999998888653
No 35
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.73 E-value=6.7e-07 Score=76.74 Aligned_cols=137 Identities=10% Similarity=-0.025 Sum_probs=92.8
Q ss_pred EEEEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeCCCeEEE
Q 015689 134 KYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYC 213 (402)
Q Consensus 134 ~yK~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~dg~~~I 213 (402)
+++....|+ +|||+|++++.|.+...+|.+.+.++++++ ++...++...+.+++..|.- ...++.+.+++..+.
T Consensus 2 ~~~~~~~i~-a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 75 (144)
T cd05018 2 KISGEFRIP-APPEEVWAALNDPEVLARCIPGCESLEKIG----PNEYEATVKLKVGPVKGTFK-GKVELSDLDPPESYT 75 (144)
T ss_pred eeeeEEEec-CCHHHHHHHhcCHHHHHhhccchhhccccC----CCeEEEEEEEEEccEEEEEE-EEEEEEecCCCcEEE
Confidence 356677786 999999999999999999999999877764 23343444334444444433 222333333322332
Q ss_pred EEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC-----hhhHhhhHHhhHHHHHHHHHHHH
Q 015689 214 FSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN-----VGMAKLAFAKGIWSYVCKMDNAL 286 (402)
Q Consensus 214 v~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~-----~wLIN~a~~~g~~~~lkkL~~al 286 (402)
+.-.-..+ .+.......|.|+|. + ++|+|+|..+.+++|. .++++.++.+.+..++++|++.+
T Consensus 76 ~~~~~~~~--------~~~~~~~~~~~l~~~-~-~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 76 ITGEGKGG--------AGFVKGTARVTLEPD-G-GGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred EEEEEcCC--------CceEEEEEEEEEEec-C-CcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22111111 222346788999997 4 4799999999999988 58889899999999999988765
No 36
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=98.34 E-value=2.6e-05 Score=66.09 Aligned_cols=134 Identities=11% Similarity=0.032 Sum_probs=87.6
Q ss_pred EEEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeCCC-eEEE
Q 015689 135 YLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQ-TFYC 213 (402)
Q Consensus 135 yK~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~dg-~~~I 213 (402)
++...+|+ +|+++|++++.|.+...+|.+.+...++++.....++... .....+ +.+. .++...++. .. +
T Consensus 3 i~~~~~i~-a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~~~-~~~~~g----~~~~--~~i~~~~~~~~~-i 73 (140)
T cd07821 3 VTVSVTID-APADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRT-VTLKDG----GTVR--ERLLALDDAERR-Y 73 (140)
T ss_pred EEEEEEEC-CCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeEEE-EEeCCC----CEEE--EEehhcCccCCE-E
Confidence 45667776 9999999999999999999999998888765211233221 111111 2222 122222222 22 2
Q ss_pred EEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC--hhhHhhhHHhhHHHHHHHHHHHH
Q 015689 214 FSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNAL 286 (402)
Q Consensus 214 v~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~--~wLIN~a~~~g~~~~lkkL~~al 286 (402)
..+...- ..| ...+.+.|.++|+ ++++|+|++..+.+++|. .++++.++...+...|++|++.|
T Consensus 74 ~~~~~~~-~~~-------~~~~~~~~~~~~~-~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 74 SYRIVEG-PLP-------VKNYVATIRVTPE-GDGGTRVTWTAEFDPPEGLTDELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred EEEecCC-CCC-------cccceEEEEEEEC-CCCccEEEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 2222211 011 2235678999997 445899999999999985 78899999999999999998876
No 37
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=98.34 E-value=4.5e-05 Score=64.96 Aligned_cols=124 Identities=15% Similarity=0.128 Sum_probs=87.7
Q ss_pred cCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeCCCeEEEEEEeecCCC
Q 015689 143 NCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCFSKECDHPL 222 (402)
Q Consensus 143 daspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~dg~~~Iv~kSVehp~ 222 (402)
++|+++|++++.|.+..++|-+.+.+.++|+.. ++ .....+..... ...+.|.... .....+. +...-+
T Consensus 2 ~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~-~~-~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~---~~~~~~---- 70 (130)
T PF03364_consen 2 NAPPEEVWSVITDYENYPRFFPPVKEVRVLERD-GD-GMRARWEVKFG-GIKRSWTSRV-TEDPPER---IRFEQI---- 70 (130)
T ss_dssp SS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEE-CC-EEEEEEEECTT-TTCEEEEEEE-EEECTTT---EEEESS----
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeC-CC-eEEEEEEEecC-CEEEEEEEEE-EEEEeee---eeeeec----
Confidence 489999999999999999999999999999984 33 33333333322 2456665532 2233322 222211
Q ss_pred CCCCCCeEEEEEeeEEEEEEeeCC---CCceEEEEEEEecCCCC--hhhHhhhHHhhHHHHHHHHH
Q 015689 223 APPQRKYVRVTYFRSGWHIKKVPG---RDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMD 283 (402)
Q Consensus 223 ~P~~kg~VR~e~~~sgwvIrpv~g---~~~~kVt~i~~~DpgG~--~wLIN~a~~~g~~~~lkkL~ 283 (402)
.|. ...+.+.|.++|.++ ...|++++.+..||++. ..+++.++.......+++|+
T Consensus 71 ----~g~--~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 71 ----SGP--FKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp ----ETT--EEEEEEEEEEEEETTECCEEEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCC--chhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence 222 235679999999965 55899999999999999 89999999999988888775
No 38
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.23 E-value=8.8e-05 Score=63.29 Aligned_cols=129 Identities=11% Similarity=0.026 Sum_probs=86.3
Q ss_pred EEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeCCCeEEEEE
Q 015689 136 LSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCFS 215 (402)
Q Consensus 136 K~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~dg~~~Iv~ 215 (402)
.....|+ +|+++|++++.|.+..++|.+.+.+++++.. .+. .+..+.|....++|... +.+.+.+.. +..
T Consensus 3 ~~~i~I~-ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~---~~~---~~~~~~~~g~~~~~~~~--v~~~~~~~~-i~~ 72 (139)
T cd07817 3 EKSITVN-VPVEEVYDFWRDFENLPRFMSHVESVEQLDD---TRS---HWKAKGPAGLSVEWDAE--ITEQVPNER-IAW 72 (139)
T ss_pred eEEEEeC-CCHHHHHHHHhChhhhHHHhhhhcEEEEcCC---Cce---EEEEecCCCCcEEEEEE--EeccCCCCE-EEE
Confidence 3455675 9999999999999999999999999887643 112 22234554566777664 223333333 333
Q ss_pred EeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC--h----hhHhhhHHhhHHHHHHHHHHHH
Q 015689 216 KECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN--V----GMAKLAFAKGIWSYVCKMDNAL 286 (402)
Q Consensus 216 kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~--~----wLIN~a~~~g~~~~lkkL~~al 286 (402)
.....+. ...+.|.|+|.+ +++|++++..+.++.+. . .+++.++.+.+...|++|++.+
T Consensus 73 ~~~~~~~-----------~~~~~~~f~~~~-~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~a 137 (139)
T cd07817 73 RSVEGAD-----------PNAGSVRFRPAP-GRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLV 137 (139)
T ss_pred EECCCCC-----------CcceEEEEEECC-CCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 3332111 134667799974 45899999999998865 2 5667777777888887777765
No 39
>PRK10724 hypothetical protein; Provisional
Probab=98.21 E-value=7.8e-05 Score=67.69 Aligned_cols=138 Identities=10% Similarity=0.111 Sum_probs=91.8
Q ss_pred CeEEEEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeCCCeE
Q 015689 132 PLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTF 211 (402)
Q Consensus 132 ~~~yK~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~dg~~ 211 (402)
...++...+++ +|++++++++.|.+..++|-+.+.+.++++.. ++ ..+......+..+ ...|+...++ ..++.
T Consensus 14 M~~i~~~~~v~-~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~-~~-~~~a~l~v~~~g~-~~~f~srv~~--~~~~~- 86 (158)
T PRK10724 14 MPQISRTALVP-YSAEQMYQLVNDVQSYPQFLPGCTGSRVLEST-PG-QMTAAVDVSKAGI-SKTFTTRNQL--TSNQS- 86 (158)
T ss_pred CCeEEEEEEec-CCHHHHHHHHHHHHHHHHhCcccCeEEEEEec-CC-EEEEEEEEeeCCc-cEEEEEEEEe--cCCCE-
Confidence 44667777776 99999999999999999999999999999983 33 3233333333432 4456554332 22332
Q ss_pred EEEEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC--hhhHhhhHHhhHHHHHHHHHHHHHh
Q 015689 212 YCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALRN 288 (402)
Q Consensus 212 ~Iv~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~--~wLIN~a~~~g~~~~lkkL~~al~k 288 (402)
|....++. | .+ ...+.|.|+|++ +++|+|++.+..+++-. ..+++.++....-..++..++.+.+
T Consensus 87 -I~~~~~~G---p-----F~--~l~g~W~f~p~~-~~~t~V~~~l~fef~s~l~~~~~~~~~~~~~~~mv~AF~~Ra~~ 153 (158)
T PRK10724 87 -ILMQLVDG---P-----FK--KLIGGWKFTPLS-QEACRIEFHLDFEFTNKLIELAFGRVFKELASNMVQAFTVRAKE 153 (158)
T ss_pred -EEEEecCC---C-----hh--hccceEEEEECC-CCCEEEEEEEEEEEchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343322 2 22 367999999984 34799999999998877 5666666666555555555555543
No 40
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=97.98 E-value=0.00032 Score=60.48 Aligned_cols=132 Identities=14% Similarity=0.229 Sum_probs=80.2
Q ss_pred EEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEE-EEeecCCCCCceEEEEeeEEEeCCCeEEEEEE
Q 015689 138 VTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGR-IIKKFPLLTPREYVLAWRLWEGRDQTFYCFSK 216 (402)
Q Consensus 138 ~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy-~v~k~P~VS~RDFV~~rri~~~~dg~~~Iv~k 216 (402)
..+|+ +|+++|++++.|.+..++|.+. ...++++. . ++...++ +.....- ....|... ...+.++..+ ...
T Consensus 4 s~~i~-ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~-~-~~~~~~~~~~~~~~g-~~~~~~~~-~~~~~~~~~i--~~~ 75 (142)
T cd08861 4 SVTVA-APAEDVYDLLADAERWPEFLPT-VHVERLEL-D-GGVERLRMWATAFDG-SVHTWTSR-RVLDPEGRRI--VFR 75 (142)
T ss_pred EEEEc-CCHHHHHHHHHhHHhhhccCCC-ceEEEEEE-c-CCEEEEEEEEEcCCC-cEEEEEEE-EEEcCCCCEE--EEE
Confidence 34565 9999999999999999999999 88888876 2 3333344 2222111 11222111 1111112222 222
Q ss_pred eecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC----hhhHhhhHHhhHHHHHHHHHHHH
Q 015689 217 ECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN----VGMAKLAFAKGIWSYVCKMDNAL 286 (402)
Q Consensus 217 SVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~----~wLIN~a~~~g~~~~lkkL~~al 286 (402)
.+.- ++ +...+.+.|.++|. ++++|+|+|....++++. ..++..++.+.+...|+.|++.+
T Consensus 76 ~~~~------~~--~~~~~~g~w~~~~~-~~~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 140 (142)
T cd08861 76 QEEP------PP--PVASMSGEWRFEPL-GGGGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAA 140 (142)
T ss_pred EeeC------CC--ChhhheeEEEEEEC-CCCcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHh
Confidence 2210 11 12345678999997 445899999999999987 34566666677777777776655
No 41
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.88 E-value=0.0011 Score=58.14 Aligned_cols=133 Identities=12% Similarity=0.096 Sum_probs=77.2
Q ss_pred EEEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeCCCeEEEE
Q 015689 135 YLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCF 214 (402)
Q Consensus 135 yK~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~dg~~~Iv 214 (402)
|-....|+ +|+|+|++++.|++...+|.+.+.+.++++...+.+....+.....+ ..+.++....++.+.+....+..
T Consensus 3 ~~~~~~i~-ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~v~~~~p~~~~~~ 80 (146)
T cd07824 3 FHTVWRIP-APPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRG-LLPYRLRFELRVTRIEPLSLLEV 80 (146)
T ss_pred ceEEEEec-CCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEe-cCCcEEEEEEEEEeecCCcEEEE
Confidence 44456776 99999999999999999999999999998731112221222111111 12233433333333333333333
Q ss_pred EEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC---------hhhHhhhHHhhHHHHHHHHHH
Q 015689 215 SKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN---------VGMAKLAFAKGIWSYVCKMDN 284 (402)
Q Consensus 215 ~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~---------~wLIN~a~~~g~~~~lkkL~~ 284 (402)
. . ..+ .++ ...|.|+|. + ++|+|++....+++|. ..+++.+..+.+...+++|+.
T Consensus 81 ~-~-~g~--------~~~---~~~~~~~~~-~-~gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~~ 144 (146)
T cd07824 81 R-A-SGD--------LEG---VGRWTLAPD-G-SGTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGLAR 144 (146)
T ss_pred E-E-EEe--------eeE---EEEEEEEEc-C-CCEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHHh
Confidence 2 1 111 122 367899985 3 3799999999998773 344455555555555555543
No 42
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=97.81 E-value=0.0023 Score=57.11 Aligned_cols=133 Identities=12% Similarity=0.109 Sum_probs=84.5
Q ss_pred EEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEEEEeec--CCCCCceEEEEeeEEEeCCCeEEEEE
Q 015689 138 VTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKF--PLLTPREYVLAWRLWEGRDQTFYCFS 215 (402)
Q Consensus 138 ~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy~v~k~--P~VS~RDFV~~rri~~~~dg~~~Iv~ 215 (402)
..+|+ +||++|++++.|.+..++|.+.+.+.++++.. ++.......... +.+ ...|... +.. .. ....+..
T Consensus 6 si~i~-a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~--~~~~~~r~~i~~~~~g~-~~~w~s~-~~~-~~-~~~~i~~ 78 (146)
T cd08860 6 SIVID-APLDLVWDMTNDIATWPDLFSEYAEAEVLEED--GDTVRFRLTMHPDANGT-VWSWVSE-RTL-DP-VNRTVRA 78 (146)
T ss_pred EEEEc-CCHHHHHHHHHhhhhhhhhccceEEEEEEEec--CCeEEEEEEEEeccCCE-EEEEEEE-EEe-cC-CCcEEEE
Confidence 34565 99999999999999999999999999999972 222323222222 211 2233321 111 11 2233333
Q ss_pred EeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCC-C---hhhHhhhHHhhHHHHHHHHHHHHHh
Q 015689 216 KECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGL-N---VGMAKLAFAKGIWSYVCKMDNALRN 288 (402)
Q Consensus 216 kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG-~---~wLIN~a~~~g~~~~lkkL~~al~k 288 (402)
+. .+..| . ....+.|.|+|+++ +|+|++.+.....+ . ..++..++.......+.+|++.+..
T Consensus 79 ~~--~~~~p-----~--~~m~~~W~f~~~~~--gT~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~ 144 (146)
T cd08860 79 RR--VETGP-----F--AYMNIRWEYTEVPE--GTRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEA 144 (146)
T ss_pred EE--ecCCC-----c--ceeeeeEEEEECCC--CEEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhh
Confidence 32 22222 1 13457799999843 49999999888663 3 4467777888888999888887754
No 43
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.74 E-value=0.003 Score=53.24 Aligned_cols=130 Identities=18% Similarity=0.235 Sum_probs=77.6
Q ss_pred EEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEec-CCCeEEEEEEeecCCCCCceEEEEeeEEEeCCCeEEEEEE
Q 015689 138 VTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDK-TNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCFSK 216 (402)
Q Consensus 138 ~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~-d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~dg~~~Iv~k 216 (402)
...|+ +|+++|++++.|.+...+|++.+..++.+.... ..|..+.. ...++. ..+-...++.+.+.+..+.. .
T Consensus 4 ~~~i~-ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~-~~~~~g---~~~~~~~~v~~~~p~~~~~~-~ 77 (140)
T cd08865 4 SIVIE-RPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQ-VRKFLG---RRIELTYEITEYEPGRRVVF-R 77 (140)
T ss_pred EEEEc-CCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEE-EEEecC---ceEEEEEEEEEecCCcEEEE-E
Confidence 34565 999999999999999999999998888775421 11233322 222221 11211122333333333322 2
Q ss_pred eecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC----hhhHhhhHHhhHHHHHHHHHHHH
Q 015689 217 ECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN----VGMAKLAFAKGIWSYVCKMDNAL 286 (402)
Q Consensus 217 SVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~----~wLIN~a~~~g~~~~lkkL~~al 286 (402)
... +.++ +..-|.+.|. ++ +|++++....++++. ..++...+.+.+..++.+|++.+
T Consensus 78 ~~~--------~~~~---~~~~~~~~~~-~~-~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 138 (140)
T cd08865 78 GSS--------GPFP---YEDTYTFEPV-GG-GTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALL 138 (140)
T ss_pred ecC--------CCcc---eEEEEEEEEc-CC-ceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 211 1122 3577999997 43 799999999999776 34555566666666666666554
No 44
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=97.66 E-value=0.01 Score=50.03 Aligned_cols=130 Identities=13% Similarity=0.081 Sum_probs=77.5
Q ss_pred EEEEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeCC-CeEE
Q 015689 134 KYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRD-QTFY 212 (402)
Q Consensus 134 ~yK~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~d-g~~~ 212 (402)
.+..+..|+ +||++|++++.|.+...+|.+.+..++.++. ++..+...+...+. ..+.. ++...++ +..+
T Consensus 3 ~~~~~~~v~-a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~---~~~~~~~~~~~~g~---~~~~~--~i~~~~~~~~~~ 73 (139)
T PF10604_consen 3 KVEVSIEVP-APPEAVWDLLSDPENWPRWWPGVKSVELLSG---GGPGTERTVRVAGR---GTVRE--EITEYDPEPRRI 73 (139)
T ss_dssp EEEEEEEES-S-HHHHHHHHTTTTGGGGTSTTEEEEEEEEE---CSTEEEEEEEECSC---SEEEE--EEEEEETTTTEE
T ss_pred EEEEEEEEC-CCHHHHHHHHhChhhhhhhhhceEEEEEccc---cccceeEEEEeccc---cceeE--EEEEecCCCcEE
Confidence 345566776 9999999999999999999999999988773 22333222222111 22222 2222222 4333
Q ss_pred EEEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC-hh----hHhhhHHhhHHHHHHHHHHHH
Q 015689 213 CFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN-VG----MAKLAFAKGIWSYVCKMDNAL 286 (402)
Q Consensus 213 Iv~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~-~w----LIN~a~~~g~~~~lkkL~~al 286 (402)
.... + ..+.. .+...|.++|. ++ +|++++..+.++ +. .+ ++...+...+-..+.+|++.+
T Consensus 74 ~~~~-~-------~~~~~---~~~~~~~~~~~-~~-gt~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 138 (139)
T PF10604_consen 74 TWRF-V-------PSGFT---NGTGRWRFEPV-GD-GTRVTWTVEFEP-GLPGWLAGPLLRPAVKRIVREALENLKRAA 138 (139)
T ss_dssp EEEE-E-------SSSSC---EEEEEEEEEEE-TT-TEEEEEEEEEEE-SCTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEE-E-------eccee---EEEEEEEEEEc-CC-CEEEEEEEEEEE-eccchhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 3322 2 12222 23567999997 43 599999999997 33 33 455555566666666666554
No 45
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.63 E-value=0.0038 Score=50.89 Aligned_cols=131 Identities=8% Similarity=-0.017 Sum_probs=76.2
Q ss_pred EEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeCC-CeEEEEE
Q 015689 137 SVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRD-QTFYCFS 215 (402)
Q Consensus 137 ~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~d-g~~~Iv~ 215 (402)
....++ +|+++|++++.|.+...+|.+.+..+++++. ... .........+......++.. ++..... ..+....
T Consensus 3 ~~~~i~-a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~ 77 (141)
T cd07812 3 ASIEIP-APPEAVWDLLSDPERWPEWSPGLERVEVLGG-GEG-GVGARFVGGRKGGRRLTLTS--EVTEVDPPRPGRFRV 77 (141)
T ss_pred EEEEeC-CCHHHHHHHHhChhhhhhhCcccceEEEcCC-CCc-cceeEEEEEecCCccccceE--EEEEecCCCceEEEE
Confidence 455676 9999999999999999999999999988764 111 11111111111111112222 2222221 1111111
Q ss_pred EeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC-----hhhHhhhHHhhHHHHHHHHHH
Q 015689 216 KECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN-----VGMAKLAFAKGIWSYVCKMDN 284 (402)
Q Consensus 216 kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~-----~wLIN~a~~~g~~~~lkkL~~ 284 (402)
.+..+ + ......|.+++.++ .+|++++.+..++++. .++++..+...+..++.+++.
T Consensus 78 ~~~~~---~--------~~~~~~~~~~~~~~-~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T cd07812 78 TGGGG---G--------VDGTGEWRLEPEGD-GGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKA 139 (141)
T ss_pred ecCCC---C--------cceeEEEEEEECCC-CcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHh
Confidence 21111 1 34678899999733 4899999999999886 355666666555556555543
No 46
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.38 E-value=0.013 Score=49.39 Aligned_cols=135 Identities=12% Similarity=0.087 Sum_probs=72.8
Q ss_pred EEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeCCCeEEEEE
Q 015689 136 LSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCFS 215 (402)
Q Consensus 136 K~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~dg~~~Iv~ 215 (402)
....+|+ +|+++|++++.|++...+|.+.+.+.+... ...|..+.+... .+. .+.+.....+.+.+.+..+..
T Consensus 3 ~~~~~i~-ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~--~~~G~~~~~~~~-~~~--~~~~~~~~~v~~~~p~~~~~~- 75 (141)
T cd07822 3 STEIEIN-APPEKVWEVLTDFPSYPEWNPFVRSATGLS--LALGARLRFVVK-LPG--GPPRSFKPRVTEVEPPRRLAW- 75 (141)
T ss_pred EEEEEec-CCHHHHHHHHhccccccccChhheeEeccc--cCCCCEEEEEEe-CCC--CCcEEEEEEEEEEcCCCEeEE-
Confidence 3455676 999999999999999999998776655432 234555554433 221 122333333444443333322
Q ss_pred EeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC-hhhHhhhHHhhHHHHHHHHHHHHHh
Q 015689 216 KECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN-VGMAKLAFAKGIWSYVCKMDNALRN 288 (402)
Q Consensus 216 kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~-~wLIN~a~~~g~~~~lkkL~~al~k 288 (402)
..... + ... ......|.++|. ++++|++++.. +..|. .+++...+...+-.-+.++...|++
T Consensus 76 ~~~~~---~--~~~---~~~~~~~~~~~~-~~~~T~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~ 138 (141)
T cd07822 76 RGGLP---F--PGL---LDGEHSFELEPL-GDGGTRFVHRE--TFSGLLAPLVLLGLGRDLRAGFEAMNEALKA 138 (141)
T ss_pred EecCC---C--CcE---eeEEEEEEEEEc-CCCcEEEEEee--EEEEEEhHHhhhhhHHHHhHhHHHHHHHHHH
Confidence 22211 1 111 224467899996 34589998764 43444 3443333444444444444444443
No 47
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=97.38 E-value=0.012 Score=49.82 Aligned_cols=129 Identities=10% Similarity=0.022 Sum_probs=76.5
Q ss_pred EEEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeCCCeEEEE
Q 015689 135 YLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCF 214 (402)
Q Consensus 135 yK~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~dg~~~Iv 214 (402)
+.....|+ +|++.|++++.|.+...+|.+.+..++++......|.... ...+. ...+.. .+.+.+.+..+ .
T Consensus 3 ~~~~~~i~-Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~~---~~~~~--~~~~~~--~i~~~~p~~~~-~ 73 (138)
T cd08862 3 FEATIVID-APPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSFK---MKPPG--LVRSTF--TVTELRPGHSF-T 73 (138)
T ss_pred EEEEEEEc-CCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEEE---EecCC--CCceEE--EEEEecCCCEE-E
Confidence 34456675 9999999999999999999999988888764112233222 11221 111221 22333323222 2
Q ss_pred EEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC-h----hhHhhhHHhhHHHHHHHHHHHH
Q 015689 215 SKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN-V----GMAKLAFAKGIWSYVCKMDNAL 286 (402)
Q Consensus 215 ~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~-~----wLIN~a~~~g~~~~lkkL~~al 286 (402)
..... + +......|.|+|. ++++|++++.+ +..|. . .++..++.+++...|++|++.+
T Consensus 74 ~~~~~----~-------~~~~~~~~~~~~~-~~~~t~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 136 (138)
T cd08862 74 WTGPA----P-------GISAVHRHEFEAK-PDGGVRVTTSE--SLSGPLAFLFGLFVGKKLRALLPEWLEGLKAAA 136 (138)
T ss_pred EEecC----C-------CEEEEEEEEEEEc-CCCcEEEEEEE--EeecchHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 22211 1 1233468999997 43589999765 44444 2 4566666777777777777654
No 48
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.26 E-value=0.017 Score=50.60 Aligned_cols=134 Identities=9% Similarity=0.025 Sum_probs=78.8
Q ss_pred EEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeC-CC-eEEEEE
Q 015689 138 VTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGR-DQ-TFYCFS 215 (402)
Q Consensus 138 ~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~-dg-~~~Iv~ 215 (402)
...++ +||+.|++++.|++....|.+.++..+.+. +++.......++++++ ..|....++.+.+ .+ .+.+..
T Consensus 4 ~~~v~-a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~----~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~ 77 (146)
T cd07823 4 EFTVP-APPDRVWALLLDIERVAPCLPGASLTEVEG----DDEYKGTVKVKLGPIS-ASFKGTARLLEDDEAARRAVLEA 77 (146)
T ss_pred eEEec-CCHHHHHHHhcCHHHHHhcCCCceeccccC----CCeEEEEEEEEEccEE-EEEEEEEEEEeccCCCcEEEEEE
Confidence 34565 999999999999999999998777766532 2333333333444432 2343222332222 22 222222
Q ss_pred EeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC-----hhhHhhhHHhhHHHHHHHHHHHH
Q 015689 216 KECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN-----VGMAKLAFAKGIWSYVCKMDNAL 286 (402)
Q Consensus 216 kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~-----~wLIN~a~~~g~~~~lkkL~~al 286 (402)
..-+ +...+.+++. .-|.+.|. + ++|+|+|....+++|. ..+++.+..+.+..|+++|++.+
T Consensus 78 ~g~~----~~~~g~~~~~---~~~~l~~~-~-~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~ 144 (146)
T cd07823 78 TGKD----ARGQGTAEAT---VTLRLSPA-G-GGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARL 144 (146)
T ss_pred EEec----CCCcceEEEE---EEEEEEec-C-CcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHh
Confidence 2210 0111233332 34677773 3 4899999999999998 35567777777777777777654
No 49
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.24 E-value=0.026 Score=49.08 Aligned_cols=135 Identities=10% Similarity=0.008 Sum_probs=77.5
Q ss_pred EEEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEe-----cCCCeEEEEEEeecCCCCCceEEEEeeEEEeCCC
Q 015689 135 YLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVD-----KTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQ 209 (402)
Q Consensus 135 yK~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~-----~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~dg 209 (402)
+.....|+ +|+|+|++++.|.+...+|++.+...+.++.. ...|..+.+ ..+.+ .....+. +.+.+.+
T Consensus 4 ~~~s~~I~-ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~-~~~~~-~~~~~~~----v~~~~p~ 76 (150)
T cd07818 4 VERSIVIN-APPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSW-EGNDK-VGEGEME----ITESVPN 76 (150)
T ss_pred EEEEEEEe-CCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEE-ecCCc-ccceEEE----EEecCCC
Confidence 34455675 99999999999999999999988776555431 112333222 11111 1111111 1122212
Q ss_pred eEEEEEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC------hhhHhhhHHhhHHHHHHHHH
Q 015689 210 TFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN------VGMAKLAFAKGIWSYVCKMD 283 (402)
Q Consensus 210 ~~~Iv~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~------~wLIN~a~~~g~~~~lkkL~ 283 (402)
.. +...... .-|.. ......|.++|. ++ +|++++....++.+. ..++...+.+.+...+.+|+
T Consensus 77 ~~-i~~~~~~--~~~~~------~~~~~~~~~~~~-~~-gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk 145 (150)
T cd07818 77 ER-IEYELRF--IKPFE------ATNDVEFTLEPV-GG-GTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLK 145 (150)
T ss_pred cE-EEEEEEe--cCCcc------ccceEEEEEEEc-CC-ceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 11 2222211 01110 134578999998 43 799999998887764 25566667777777777777
Q ss_pred HHHH
Q 015689 284 NALR 287 (402)
Q Consensus 284 ~al~ 287 (402)
+.+.
T Consensus 146 ~~~E 149 (150)
T cd07818 146 AVLE 149 (150)
T ss_pred HHhh
Confidence 6654
No 50
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.77 E-value=0.062 Score=46.22 Aligned_cols=136 Identities=7% Similarity=0.008 Sum_probs=72.3
Q ss_pred EEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEE--EEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeCCCeEEE
Q 015689 136 LSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQL--QVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYC 213 (402)
Q Consensus 136 K~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evL--E~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~dg~~~I 213 (402)
....+|+ +||+.|++++.|.+...+|++......+. +.....|....+... .+- .+-++. -++.+.+.+..++
T Consensus 3 ~~~~~i~-ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~g-~~~~~~--~~v~~~~p~~~l~ 77 (144)
T cd07825 3 SVSRTVD-APAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMR-LDG-GPYRIT--NHVVAFEENRLIA 77 (144)
T ss_pred EEEEEEe-CCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEE-cCC-CceEEE--EEEEEECCCCEEE
Confidence 3455675 99999999999999999999742221111 111233444443332 221 111222 1233333344443
Q ss_pred EEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC-hhhHh--hhHHhhHHHHHHHHHHHH
Q 015689 214 FSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN-VGMAK--LAFAKGIWSYVCKMDNAL 286 (402)
Q Consensus 214 v~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~-~wLIN--~a~~~g~~~~lkkL~~al 286 (402)
..... +..+.. .....|.++|+ ++++|+|++...-+..+. .-+.+ .....++...|.+|++.+
T Consensus 78 ~~~~~--~~~~~~-------~~~~~~~l~~~-~~g~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~ 143 (144)
T cd07825 78 WRPGP--AGQEPG-------GHRWRWELEPI-GPGRTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLA 143 (144)
T ss_pred EEccC--CCCCCC-------ceeEEEEEEEC-CCCcEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHh
Confidence 33211 111111 12345889997 445799997764333222 22222 446788888999888765
No 51
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=96.68 E-value=0.26 Score=43.31 Aligned_cols=131 Identities=10% Similarity=-0.009 Sum_probs=74.5
Q ss_pred EEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEe-CCCeEEEEEEe
Q 015689 139 TVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEG-RDQTFYCFSKE 217 (402)
Q Consensus 139 ~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~-~dg~~~Iv~kS 217 (402)
..++ +|+++|+++|.|++.-..--|.+++ +|. .+ +..-.....++.+++.+=-... ++.+. ++..+.+....
T Consensus 3 ~~v~-a~~~~vw~~l~D~~~l~~ciPG~~~---~e~-~~-~~~~~~~~v~vG~i~~~~~g~~-~~~~~~~~~~~~~~~~g 75 (140)
T PF06240_consen 3 FEVP-APPEKVWAFLSDPENLARCIPGVES---IEK-VG-DEYKGKVKVKVGPIKGTFDGEV-RITEIDPPESYTLEFEG 75 (140)
T ss_dssp EEEC-S-HHHHHHHHT-HHHHHHHSTTEEE---EEE-EC-TEEEEEEEEESCCCEEEEEEEE-EEEEEETTTEEEEEEEE
T ss_pred EEec-CCHHHHHHHhcCHHHHHhhCCCcEE---eee-cC-cEEEEEEEEEeccEEEEEEEEE-EEEEcCCCcceEeeeec
Confidence 3565 9999999999998765555555555 554 33 3333333446666544433322 33333 33333344444
Q ss_pred ecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC-----hhhHhhhHHhhHHHHHHHHHHHH
Q 015689 218 CDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN-----VGMAKLAFAKGIWSYVCKMDNAL 286 (402)
Q Consensus 218 Vehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~-----~wLIN~a~~~g~~~~lkkL~~al 286 (402)
-.. .+-..+... ..+...++. .|+++|-...+.+|. ..+++.+..+.+-.|+++|++.+
T Consensus 76 ~g~------~~~~~~~~~---~~~~~~~~~-~T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~~l 139 (140)
T PF06240_consen 76 RGR------GGGSSASAN---ITLSLEDDG-GTRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLERKL 139 (140)
T ss_dssp EEC------TCCEEEEEE---EEEEECCCT-CEEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCC------ccceEEEEE---EEEEcCCCC-CcEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 321 233333322 223333344 499999999999999 46777777777777777777654
No 52
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=96.49 E-value=0.27 Score=41.47 Aligned_cols=134 Identities=11% Similarity=0.099 Sum_probs=73.2
Q ss_pred EEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeCCCeEEEEEE
Q 015689 137 SVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCFSK 216 (402)
Q Consensus 137 ~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~dg~~~Iv~k 216 (402)
...+|+ +|+++|++++.|++...+|.+.+...+. +. ...+... +... +.. +..+-...++.+.+.+..+....
T Consensus 4 ~s~~I~-a~~~~Vw~~l~d~~~~~~w~~~~~~~~~-~~-~~Gg~~~-~~~~--~~~-g~~~~~~~~i~~~~~~~~i~~~~ 76 (139)
T cd07814 4 IEREFD-APPELVWRALTDPELLAQWFGPTTTAEM-DL-RVGGRWF-FFMT--GPD-GEEGWVSGEVLEVEPPRRLVFTW 76 (139)
T ss_pred EEEEec-CCHHHHHHHcCCHHHHHhhhCcCCceEE-cc-cCCceEE-EEEE--CCC-CCEEeccEEEEEEcCCCeEEEEe
Confidence 345676 9999999999999999999986222222 21 1223322 2221 110 11122222233333333322221
Q ss_pred eecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC-hhhHhhhHHhhHHHHHHHHHHHHH
Q 015689 217 ECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN-VGMAKLAFAKGIWSYVCKMDNALR 287 (402)
Q Consensus 217 SVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~-~wLIN~a~~~g~~~~lkkL~~al~ 287 (402)
.. .+. |. .. ....-|.|+|. + ++|+|++.+..-+.+. .......+.+++..++.+|++.|.
T Consensus 77 ~~-~~~-~~---~~---~~~~~~~~~~~-~-~~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 138 (139)
T cd07814 77 AF-SDE-TP---GP---ETTVTVTLEET-G-GGTRLTLTHSGFPEEDAEQEAREGMEEGWTGTLDRLKALLE 138 (139)
T ss_pred cc-cCC-CC---CC---ceEEEEEEEEC-C-CCEEEEEEEEccChHhHHHHHHhCHhhHHHHHHHHHHHHhh
Confidence 11 111 11 11 24566889997 4 4799998876665543 334555667788888888888775
No 53
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=96.41 E-value=0.16 Score=47.36 Aligned_cols=140 Identities=14% Similarity=0.100 Sum_probs=89.9
Q ss_pred CeEEEEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeCCCeE
Q 015689 132 PLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTF 211 (402)
Q Consensus 132 ~~~yK~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~dg~~ 211 (402)
+.+.....+|+ .|+|+|+++..|.|..+.|.+.+...+++++. - -+|+.+.|+-. +|--..++.....+.
T Consensus 69 ~i~v~~~V~I~-kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddk----r--SrW~~~ap~g~--~v~Wea~it~d~~~e- 138 (217)
T COG5637 69 PIEVEVQVTID-KPAEQVYAYWRDLENLPLWMKHLDSVKVLDDK----R--SRWKANAPLGL--EVEWEAEITKDIPGE- 138 (217)
T ss_pred ceEEEEEEEeC-ChHHHHHHHHHhhhhhhHHHHhhceeeccCCC----c--cceeEcCCCCc--eEEEeehhhccCCCc-
Confidence 44444455564 99999999999999999999999999998752 1 57777777311 222222232222333
Q ss_pred EEEEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEE-EEEecCCCC-hhhHhhhHHhhHHHHHHHHHHHHHhh
Q 015689 212 YCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRI-FHQEDAGLN-VGMAKLAFAKGIWSYVCKMDNALRNY 289 (402)
Q Consensus 212 ~Iv~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~-i~~~DpgG~-~wLIN~a~~~g~~~~lkkL~~al~kY 289 (402)
.|-..|++-..+| +.|.|| |++.+|+. |+|.. +.|.-|||. .-+++.++.+.+-..+..=-...+.|
T Consensus 139 ~I~W~Sl~Ga~v~-NsG~Vr---------F~~~pg~~-t~V~v~lsY~~Pgg~~~a~va~~fgeepeqqI~~DL~RFk~~ 207 (217)
T COG5637 139 RIQWESLPGARVE-NSGAVR---------FYDAPGDS-TEVKVTLSYRPPGGLLGAVVAKLFGEEPEQQIQDDLERFKEY 207 (217)
T ss_pred EEeeecCCCCcCC-CCccEE---------eeeCCCCc-eEEEEEEEecCCccHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 4566787554443 678887 66666764 44433 345567777 77888888777766655444455556
Q ss_pred hhh
Q 015689 290 AVV 292 (402)
Q Consensus 290 ~~~ 292 (402)
++.
T Consensus 208 ~e~ 210 (217)
T COG5637 208 QEN 210 (217)
T ss_pred HHc
Confidence 555
No 54
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=96.41 E-value=0.13 Score=46.45 Aligned_cols=135 Identities=11% Similarity=0.073 Sum_probs=79.8
Q ss_pred EEEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEE-e-CCCeEE
Q 015689 135 YLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWE-G-RDQTFY 212 (402)
Q Consensus 135 yK~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~-~-~dg~~~ 212 (402)
|.++-.+. +|||+|+++|.|+|....--|-++.++. .++ +..+....+.++++ .+|--..+.-. . ++..+.
T Consensus 3 ~~G~f~V~-~p~e~Vw~~L~dpe~~a~ciPG~qs~e~----~g~-e~~~~v~l~ig~l~-~~~~g~~~~~~v~~~~~~~~ 75 (146)
T COG3427 3 YEGTFRVA-APPEAVWEFLNDPEQVAACIPGVQSVET----NGD-EYTAKVKLKIGPLK-GTFSGRVRFVNVDEPPRSIT 75 (146)
T ss_pred ccceEEec-CCHHHHHHHhcCHHHHHhhcCCcceeee----cCC-eEEEEEEEeeccee-EEEEEEEEEccccCCCcEEE
Confidence 44555665 9999999999999998888777777544 223 44444555777777 44544433322 1 122222
Q ss_pred EEEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC-----hhhHhhhHHhhHHHHHHHHHHHHH
Q 015689 213 CFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN-----VGMAKLAFAKGIWSYVCKMDNALR 287 (402)
Q Consensus 213 Iv~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~-----~wLIN~a~~~g~~~~lkkL~~al~ 287 (402)
+-... .+.-.--.......+.|. |. +|++.|....|.+|. ..+++.+..+.+-.++++|...+.
T Consensus 76 i~g~G---------~~~~g~~~~~~~v~l~~~-g~-gt~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~~l~ 144 (146)
T COG3427 76 INGSG---------GGAAGFADGTVDVQLEPS-GE-GTRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSSELA 144 (146)
T ss_pred EEeec---------ccccceeeeeeEEEEEEc-CC-CcEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22121 000000011122234443 43 599999999999998 467777777777777777766553
No 55
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=96.26 E-value=0.045 Score=49.23 Aligned_cols=134 Identities=13% Similarity=0.150 Sum_probs=79.2
Q ss_pred EEEEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeCCCeEEE
Q 015689 134 KYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYC 213 (402)
Q Consensus 134 ~yK~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~dg~~~I 213 (402)
.|.....++ .+|++++++..|.+.+++.-|.|...+++++. ++..+--....+. .=|+.-..+-....++. .|
T Consensus 3 ~~~~s~lv~-y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~--~~~l~A~l~V~~k--~i~e~F~Trv~~~~~~~--~I 75 (146)
T COG2867 3 QIERTALVP-YSASQMFDLVNDVESYPEFLPWCSASRVLERN--ERELIAELDVGFK--GIRETFTTRVTLKPTAR--SI 75 (146)
T ss_pred eeEeeeecc-CCHHHHHHHHHHHHhCchhccccccceEeccC--cceeEEEEEEEhh--heeeeeeeeeeecCchh--hh
Confidence 344455666 99999999999999999999999999999983 2222211111111 11222222111111111 22
Q ss_pred EEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCChhhHhhhHHhhHHHHHHHHHHHHH
Q 015689 214 FSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLNVGMAKLAFAKGIWSYVCKMDNALR 287 (402)
Q Consensus 214 v~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~~wLIN~a~~~g~~~~lkkL~~al~ 287 (402)
....+ .|.-| -..++|.|+|+ ++++|+|.+...-+++.. |+++++....-....+|.++..
T Consensus 76 ~~~l~--------~GPFk--~L~~~W~F~pl-~~~~ckV~f~ldfeF~s~--ll~~~~g~~f~~~a~~mv~aF~ 136 (146)
T COG2867 76 DMKLI--------DGPFK--YLKGGWQFTPL-SEDACKVEFFLDFEFKSR--LLGALIGPVFKRLASKMVEAFE 136 (146)
T ss_pred hhhhh--------cCChh--hhcCceEEEEC-CCCceEEEEEEEeeehhH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 12222 25799999998 666999999887777665 5555555444445555555544
No 56
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.02 E-value=0.54 Score=40.59 Aligned_cols=107 Identities=14% Similarity=0.042 Sum_probs=63.2
Q ss_pred EEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEec---CCCeEEEEEEeecCCCCCceEEEEeeEEEeCCCeEEEE
Q 015689 138 VTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDK---TNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCF 214 (402)
Q Consensus 138 ~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~---d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~dg~~~Iv 214 (402)
...|+ +|+|+|++++.|+++...|.+.+.+.++++... ..|.. +.+..+...+. +....++.+.+.+..+ .
T Consensus 4 s~~I~-ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~-~~~~~~~~~~~---~~w~~~it~~~p~~~f-~ 77 (137)
T cd07820 4 STVIP-APIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGAR-VTYRLRHFGIP---QRWTTEITEVEPPRRF-V 77 (137)
T ss_pred EEEcC-CCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcE-EEEEEEecCCc---eEEEEEEEEEcCCCeE-E
Confidence 44565 999999999999999999999999999986421 11233 33333222111 2222233344434333 3
Q ss_pred EEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCC
Q 015689 215 SKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGL 262 (402)
Q Consensus 215 ~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG 262 (402)
..++. |.++ ....-+.++|. ++ +|+|++....++.+
T Consensus 78 ~~~~~--------G~~~--~w~h~~~f~~~-~~-gT~vt~~v~~~~p~ 113 (137)
T cd07820 78 DEQVS--------GPFR--SWRHTHRFEAI-GG-GTLMTDRVEYRLPL 113 (137)
T ss_pred EEecc--------CCch--hCEEEEEEEEC-CC-ceEEEEEEEEeCCc
Confidence 33331 1121 12345678886 33 79999988877753
No 57
>TIGR01599 PYST-A Plasmodium yoelii subtelomeric family PYST-A. A single high-scoring gene was identified in the complete genome of P. falciparum as well as a single gene from P. chaboudi from GenBank which were included in the seed. There are no obvious homologs to these genes in any non-Plasmodium organism. These observations suggest an expansion of this family in yoelii from a common Plasmodium ancestor gene (present in a single copy in falciparum).
Probab=95.70 E-value=1.2 Score=42.41 Aligned_cols=160 Identities=12% Similarity=0.099 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHhhccCCCCCCCeEEEe-cCCcEEEEeeeeccCCCCCeEEEEEEEeccCC-HHHHHHHHhCccchhHHHh
Q 015689 87 SDADLKFLIETLEDNFSENDKWENVID-KRNNLLYYNARCCKPKVGPLKYLSVTVFENCT-PEILRDFYMDNDYRVRWDK 164 (402)
Q Consensus 87 sdedl~~ll~llee~~~~~~~Wklv~e-k~gikVyyka~r~~p~~G~~~yK~~~viedas-pE~V~d~l~D~e~R~kWD~ 164 (402)
.++-+++++.+|+..+...++.++... .++..+||++ .++ ...-|..-.|++.. -.++.+.|||++.-...|.
T Consensus 17 A~eiM~EAv~~Lk~hAt~~ddY~ly~~~~~~~~~y~KK----~~n-tdI~K~~~~I~~pnkYneIIN~LWdpn~~~~fn~ 91 (208)
T TIGR01599 17 AEEIMEEAELRLKRHAINKNDYNLYSTPNPDSTVYYKK----DHN-TIIGKIHLTIQDPNKYDAIIKTLWDFNDNKKFGR 91 (208)
T ss_pred HHHHHHHHHHHHHHhCcCCCCccccccCCCCceEEEee----cCC-cEEEEEEEEecCchhHHHHHHHHhccccccCCCc
Confidence 345667777777766556678988765 4567788763 222 33446666775433 3889999999999999999
Q ss_pred hcceeEEEEEecCCCeEEEEEEeecCCCCCceEEEEe--eEEEeCCCeEEEEEEeecCCCC-CC-CC-------------
Q 015689 165 TVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAW--RLWEGRDQTFYCFSKECDHPLA-PP-QR------------- 227 (402)
Q Consensus 165 ~v~e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~r--ri~~~~dg~~~Iv~kSVehp~~-P~-~k------------- 227 (402)
.....+++.. -+++..++....+-+..++.-|.++- ...-.+| +.+|+..|.+-.+. |. ++
T Consensus 92 ~~ikgki~Rv-YnpNLvmiqqry~~~~~~~~~YfyaLa~Kv~iSed-~TiIv~~S~~ind~n~~~~~~~~n~iv~san~f 169 (208)
T TIGR01599 92 KFIKGKVVRV-YSPNLIMIQQRYKDASGSPNKYFYALATKVKVSED-TTIIACTSANINDHNKVDKKNFKNKIIESANSF 169 (208)
T ss_pred hheeeeEEEE-eCCCeEEEEeecCCCCCCcceEEeEeeeeeecCCC-cEEEEEeccccccCCccccccccceeeeecccc
Confidence 9999999988 57778888877765655666665553 2222344 44445544432111 11 11
Q ss_pred -------------CeEEEEEeeEEEEEEeeCCCCceEEEEE
Q 015689 228 -------------KYVRVTYFRSGWHIKKVPGRDACEIRIF 255 (402)
Q Consensus 228 -------------g~VR~e~~~sgwvIrpv~g~~~~kVt~i 255 (402)
.......-++|+.|++- + +...+||+
T Consensus 170 ~~~idse~dir~g~l~k~fvNl~G~~IkK~-~-d~v~iTyi 208 (208)
T TIGR01599 170 KTDIDSEEDIRNGELKKMFVNLSGFIIKKK-D-DNIDITYV 208 (208)
T ss_pred cCccCHHHHHHhhhhhheEEeeEEEEEEec-C-CcEEEEEC
Confidence 13344567899999984 3 37888874
No 58
>KOG3845 consensus MLN, STAR and related lipid-binding proteins [Lipid transport and metabolism]
Probab=94.89 E-value=0.0011 Score=64.21 Aligned_cols=176 Identities=10% Similarity=-0.098 Sum_probs=107.2
Q ss_pred CeEEEecCCcEEEEeeeeccCCCCCeEEEEEEEeccCCHHHHHHHH-hCccchhHHHhhcceeEEEEEecCCCeEEEEEE
Q 015689 108 WENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFY-MDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRII 186 (402)
Q Consensus 108 Wklv~ek~gikVyyka~r~~p~~G~~~yK~~~viedaspE~V~d~l-~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy~v 186 (402)
|...+.-.-+++..++ ....+.+.++....+. --......++ .+-..+..|+. ..-...++. +..++++..+.
T Consensus 27 ~s~~k~~~~v~~~~~a---~~~~~~~i~~v~~~~~-lf~~~~~~~i~~~~~i~~~~~g-~~v~~~~~~-~~~~~~~~~s~ 100 (241)
T KOG3845|consen 27 WSVAKTLKLVTVESLA---GEKPKGNISRVRRFFC-LFVTEDLVFISLLWLIELLQNG-PEVYNMLEK-IQKNTDIWTSE 100 (241)
T ss_pred HHHHhhcceeEEeccC---CcCcCCcccccceeec-cccccchheeecchhhHHHhcc-chHHHHHHH-HHhheeeeeEe
Confidence 5555544555555332 2223344555555543 1222222222 23333333333 244444554 44556666555
Q ss_pred eec---CCCCCceEEEEeeEEEeCCCeEEEEEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCC-ceEEEEEEEecCCC
Q 015689 187 KKF---PLLTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRD-ACEIRIFHQEDAGL 262 (402)
Q Consensus 187 ~k~---P~VS~RDFV~~rri~~~~dg~~~Iv~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~-~~kVt~i~~~DpgG 262 (402)
... -.+++|+|+....+.+.+........+.++++.+++...++|+..+.+|+...|+++++ .+...-..|.|..|
T Consensus 101 ~~~~~~~i~~~~~~i~~~~v~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~~~~~~~~~~~d~rg 180 (241)
T KOG3845|consen 101 FDSFNVDIFRPRVFIDSGSVFRLEHMINIPVTTCVSRAFLSAKVILVRGYNHPCGVFCVPLPIEPFILAWLREWFLDLRG 180 (241)
T ss_pred cHhhhhhcccccccCCcceEeehhhccccccceeccchhhcccceeeeccCCcceEEEEEcCCcchhHHHHHHHHhhccc
Confidence 522 24799999999888888766555667889999999999999999999999999997764 34444455678877
Q ss_pred C--hhhHhhhHHhhHHHHHHHHHHHHHhh
Q 015689 263 N--VGMAKLAFAKGIWSYVCKMDNALRNY 289 (402)
Q Consensus 263 ~--~wLIN~a~~~g~~~~lkkL~~al~kY 289 (402)
. +...+..+...+..+..+..++...+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (241)
T KOG3845|consen 181 LPQENVGERPEARTLVNFELAPLKAPKAL 209 (241)
T ss_pred CCCccccccccccccchhhcchhhccccc
Confidence 7 55666655556666665555554443
No 59
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=94.58 E-value=2.4 Score=36.64 Aligned_cols=133 Identities=11% Similarity=0.126 Sum_probs=69.7
Q ss_pred EEEEEeccCCHHHHHHHHhCccchhHHHh-hcceeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeCCCeEEEE
Q 015689 136 LSVTVFENCTPEILRDFYMDNDYRVRWDK-TVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCF 214 (402)
Q Consensus 136 K~~~viedaspE~V~d~l~D~e~R~kWD~-~v~e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~dg~~~Iv 214 (402)
.....|+ +|+++|++++.|++...+|-. .--.....+.+...|....|.. ..| ...+|-..-.+.+.+.+..++.
T Consensus 3 ~~~r~i~-ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d~~~GG~~~~~~-~~~--~g~~~~~~g~v~e~~p~~~l~~ 78 (139)
T cd08894 3 VTTRVID-APRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFDLRPGGRWRFVM-HGP--DGTDYPNRIVFLEIEPPERIVY 78 (139)
T ss_pred EEEEEeC-CCHHHHHHHhCCHHHHhhccCcCCCcceEEEEEecCCCEEEEEE-ECC--CCCEecceEEEEEEcCCCEEEE
Confidence 3455675 999999999999999999953 1111111221122333322211 112 1233332222333333333333
Q ss_pred EEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC--hhhHhhhHHhhHHHHHHHHHHHHH
Q 015689 215 SKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALR 287 (402)
Q Consensus 215 ~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~--~wLIN~a~~~g~~~~lkkL~~al~ 287 (402)
.-..+ + ....--|.|+|. + ++|++++.+. .+.-. ...+...+..|.-..+.+|+..+.
T Consensus 79 t~~~~----~--------~~~~v~~~~~~~-~-~gT~ltl~~~-~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 138 (139)
T cd08894 79 DHGSG----P--------PRFRLTVTFEEQ-G-GKTRLTWRQV-FPTAAERCEKIKFGAVEGNEQTLDRLAAYLA 138 (139)
T ss_pred EeccC----C--------CcEEEEEEEEEC-C-CCEEEEEEEE-cCCHHHHHHHHHhCHHHHHHHHHHHHHHHHh
Confidence 32211 1 112345788886 3 4799998753 22211 223456677888888888887764
No 60
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=94.52 E-value=2.2 Score=35.84 Aligned_cols=133 Identities=12% Similarity=0.068 Sum_probs=70.1
Q ss_pred EEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeCCCeEEEEE
Q 015689 136 LSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCFS 215 (402)
Q Consensus 136 K~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~dg~~~Iv~ 215 (402)
....+|+ +||+.|++++.|.+...+|..-.. .+.....|..+.+... .+ +++...-.+.+.+.+..++..
T Consensus 3 ~~~~~i~-ap~e~Vw~~~td~~~~~~W~~~~~----~~~~~~~G~~~~~~~~-~~----~~~~~~~~v~~~~~~~~l~~~ 72 (136)
T cd08893 3 VYVTYIR-ATPEKVWQALTDPEFTRQYWGGTT----VESDWKVGSAFEYRRG-DD----GTVDVEGEVLESDPPRRLVHT 72 (136)
T ss_pred EEEEEec-CCHHHHHHHHcCchhhhheecccc----cccCCcCCCeEEEEeC-CC----cccccceEEEEecCCCeEEEE
Confidence 3455675 999999999999999999976521 1111234444443222 11 111111122222222223222
Q ss_pred EeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCChhhHhhhHHhhHHHHHHHHHHHHH
Q 015689 216 KECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLNVGMAKLAFAKGIWSYVCKMDNALR 287 (402)
Q Consensus 216 kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~~wLIN~a~~~g~~~~lkkL~~al~ 287 (402)
-.. +..+.. ..+....-.|.|+|.++ +|++++.+..-+.+. .....+..+...++.+|+..+.
T Consensus 73 ~~~--~~~~~~---~~~~~~~v~~~l~~~~~--~t~l~~~~~~~~~~~--~~~~~~~~gw~~~l~~Lk~~~e 135 (136)
T cd08893 73 WRA--VWDPEM---AAEPPSRVTFEIEPVGD--VVKLTVTHDGFPPGS--PTLEGVSGGWPAILSSLKTLLE 135 (136)
T ss_pred Eec--CCCccc---CCCCCEEEEEEEEecCC--cEEEEEEecCCCCch--hHHHhhhcCHHHHHHHHHHHhc
Confidence 111 111100 11112344577888633 788887765544442 3444567788888988888764
No 61
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=94.25 E-value=3.4 Score=36.00 Aligned_cols=140 Identities=9% Similarity=0.104 Sum_probs=71.1
Q ss_pred EEEEEeccCCHHHHHHHHhCccchhHHHhhcc-eeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeCCCeEEEE
Q 015689 136 LSVTVFENCTPEILRDFYMDNDYRVRWDKTVV-EHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCF 214 (402)
Q Consensus 136 K~~~viedaspE~V~d~l~D~e~R~kWD~~v~-e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~dg~~~Iv 214 (402)
.....|+ +|+++|++.+.|++...+|-.--. .+...+-+...|....+... .| ...+|-..-++.+.+....+..
T Consensus 3 ~i~r~i~-a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~-~~--~g~~~~~~g~v~~i~p~~~l~~ 78 (146)
T cd08896 3 VLSRTID-APRELVWRAWTEPELLKQWFCPKPWTTEVAELDLRPGGAFRTVMR-GP--DGEEFPNPGCFLEVVPGERLVF 78 (146)
T ss_pred EEEEEeC-CCHHHHHHHcCCHHHHhccCCCCCccceEEEEEeecCcEEEEEEE-CC--CCCEecceEEEEEEeCCCEEEE
Confidence 3455676 999999999999999999943100 01111111223333332211 11 1233322222323322333333
Q ss_pred EEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC--hhhHhhhHHhhHHHHHHHHHHHHH
Q 015689 215 SKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALR 287 (402)
Q Consensus 215 ~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~--~wLIN~a~~~g~~~~lkkL~~al~ 287 (402)
.-.......|...... ..-|.|+|. + ++|++++.+ ..+... .....+.+..|....+.+|+..+.
T Consensus 79 t~~~~~~~~~~~~~~~-----~v~~~~~~~-~-~gT~Ltl~~-~~~~~~~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 79 TDALTPGWRPAEKPFM-----TAIITFEDE-G-GGTRYTARA-RHWTEADRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred EEeecCCcCCCCCCcE-----EEEEEEEec-C-CcEEEEEEE-EeCCHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 3322211122222222 234888886 3 479998753 333222 334455567889999999888764
No 62
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=94.19 E-value=3.8 Score=36.31 Aligned_cols=118 Identities=8% Similarity=-0.030 Sum_probs=70.5
Q ss_pred EEEEEEeccCCHHHHHHHHhCcc--chhHHHhhcceeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeCCCeEE
Q 015689 135 YLSVTVFENCTPEILRDFYMDND--YRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFY 212 (402)
Q Consensus 135 yK~~~viedaspE~V~d~l~D~e--~R~kWD~~v~e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~dg~~~ 212 (402)
+..+..++ ||+++|++++.|.+ ....|-+.+..+++++-+ +.--.|-.+...-.. +.-....++-..++....
T Consensus 3 ~~~e~~i~-a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~-~~~GsvR~~~~~~~~---~~~~~kE~l~~~D~~~~~ 77 (148)
T cd07816 3 LEHEVELK-VPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGD-GGPGSIKLITFGPGG---KVKYVKERIDAVDEENKT 77 (148)
T ss_pred EEEEEEec-CCHHHHHHHHhcChhhccccccccccEEEEEecC-CCCceEEEEEEcCCC---cceEEEEEEEEEcccccE
Confidence 34566675 99999999999887 357899999999998762 211233333322111 222233344444443333
Q ss_pred EEEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC
Q 015689 213 CFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN 263 (402)
Q Consensus 213 Iv~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~ 263 (402)
+..+-++-+. |. -....|.+.+.+.|. ++++|.+.|...-++...
T Consensus 78 ~~y~vveg~~-~~----~~~~~y~~t~~v~~~-~~~~t~v~Wt~~ye~~~~ 122 (148)
T cd07816 78 YKYTVIEGDV-LK----DGYKSYKVEIKFVPK-GDGGCVVKWTIEYEKKGD 122 (148)
T ss_pred EEEEEEeccc-cc----CceEEEEEEEEEEEC-CCCCEEEEEEEEEEECCC
Confidence 3333332211 10 124567888999997 666899999888876543
No 63
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=94.03 E-value=3 Score=34.51 Aligned_cols=123 Identities=12% Similarity=0.134 Sum_probs=68.5
Q ss_pred cCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeCCCeEEEEEEeecCCC
Q 015689 143 NCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCFSKECDHPL 222 (402)
Q Consensus 143 daspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~dg~~~Iv~kSVehp~ 222 (402)
+||+++|++++.|++...+| -.....+.+...|..+.+ .. + ...++....++.+...+..+...-... +
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W----~~~~~~~~~~~~Gg~~~~--~~-~--~g~~~~~~~~v~~~~p~~~i~~~~~~~--~ 69 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQW----FTTSEAEMDFRPGGSFRF--MD-P--DGGEFGFDGTVLEVEPPERIVFTWRMP--D 69 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHH----SEEEEEEEECSTTEEEEE--EE-T--TSEEEEEEEEEEEEETTTEEEEEEEEE--T
T ss_pred CcCHHHHHHHHCCHhHHhhc----cCCCcceeeeecCCEEEE--Ee-c--CCCCceeeEEEEEEeCCEEEEEEEEcc--C
Confidence 58999999999999999999 222222322345666555 22 2 333444433343333333443332221 1
Q ss_pred CCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCChhhHhhhHHhhHHHHHHHHHHHH
Q 015689 223 APPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLNVGMAKLAFAKGIWSYVCKMDNAL 286 (402)
Q Consensus 223 ~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~~wLIN~a~~~g~~~~lkkL~~al 286 (402)
-+. +....-.|.|++. +++|++++.+. .... .......+..|...++.+|++.|
T Consensus 70 ~~~------~~~~~v~~~~~~~--~~~T~l~~~~~-~~~~-~~~~~~~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 70 DPD------GPESRVTFEFEEE--GGGTRLTLTHS-GFPD-DDEEEEGMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp SSS------CEEEEEEEEEEEE--TTEEEEEEEEE-EEHS-HHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCC------CCceEEEEEEEEc--CCcEEEEEEEE-cCCc-cHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 3344566788884 34799987762 1111 12222226778888888888766
No 64
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=91.92 E-value=5.2 Score=35.49 Aligned_cols=131 Identities=11% Similarity=0.047 Sum_probs=71.5
Q ss_pred CCCCeEEEEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeCC
Q 015689 129 KVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRD 208 (402)
Q Consensus 129 ~~G~~~yK~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~d 208 (402)
.+|...+....+|+ +|+++|++++.|++...+|.... ..+ ...|..+.+.... + .++....++...+.
T Consensus 7 ~~~~~~i~~~~~i~-Ap~e~Vw~altdp~~~~~W~~~~----~~~--~~~G~~~~~~~~~-~----~~~~~~~~v~e~~p 74 (157)
T cd08899 7 LDGGATLRFERLLP-APIEDVWAALTDPERLARWFAPG----TGD--LRVGGRVEFVMDD-E----EGPNATGTILACEP 74 (157)
T ss_pred cCCCeEEEEEEecC-CCHHHHHHHHcCHHHHHhhcCCC----CCC--cccCceEEEEecC-C----CCCccceEEEEEcC
Confidence 36667778888886 99999999999999999999832 112 2334444332211 1 11111112223332
Q ss_pred CeEEEEEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCChhhHhhhHHhhHHHHHHHHHHHHHh
Q 015689 209 QTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLNVGMAKLAFAKGIWSYVCKMDNALRN 288 (402)
Q Consensus 209 g~~~Iv~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~~wLIN~a~~~g~~~~lkkL~~al~k 288 (402)
+..+...- ...+ .. ....|.|++. + ++|++++.+..-++-. ....+..|-..+|.+|++.+.+
T Consensus 75 ~~~l~~~~-~~~~----~~-------~~~~~~l~~~-~-~gT~v~~~~~~~~~~~---~~~~~~~GW~~~L~~Lk~~~e~ 137 (157)
T cd08899 75 PRLLAFTW-GEGG----GE-------SEVRFELAPE-G-DGTRLTLTHRLLDERF---GAGAVGAGWHLCLDVLEAALEG 137 (157)
T ss_pred CcEEEEEe-cCCC----CC-------ceEEEEEEEc-C-CCEEEEEEEeccCchh---hhhhhcccHHHHHHHHHHHHcC
Confidence 32222211 1001 11 2345667875 3 4799988766644331 2233456666677777776664
No 65
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=87.14 E-value=19 Score=31.10 Aligned_cols=136 Identities=10% Similarity=-0.022 Sum_probs=68.1
Q ss_pred EEEEeccCCHHHHHHHHhCccchhHHHhhc--ceeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeCCCeEEEE
Q 015689 137 SVTVFENCTPEILRDFYMDNDYRVRWDKTV--VEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCF 214 (402)
Q Consensus 137 ~~~viedaspE~V~d~l~D~e~R~kWD~~v--~e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~dg~~~Iv 214 (402)
.+..|+ +|++.|++.+.|++...+|-.-- -.++..+.+...|-.+.+... .+ .+..|-..-.+.+.+.+..+..
T Consensus 4 i~r~~~-ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~-~~--~g~~~~~~g~~~~~~p~~~l~~ 79 (143)
T cd08900 4 LERTYP-APPERVFAAWSDPAARARWFVPSPDWTVLEDEFDFRVGGREVSRGG-PK--GGPEITVEARYHDIVPDERIVY 79 (143)
T ss_pred EEEEeC-CCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEEecCCCCEEEEEEE-CC--CCCEEeeeEEEEEecCCceEEE
Confidence 445675 99999999999999999995321 112222222333333333221 11 2233333323333332333333
Q ss_pred EEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEe-cCCCChhhHhhhHHhhHHHHHHHHHHHHH
Q 015689 215 SKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQE-DAGLNVGMAKLAFAKGIWSYVCKMDNALR 287 (402)
Q Consensus 215 ~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~-DpgG~~wLIN~a~~~g~~~~lkkL~~al~ 287 (402)
.-....+..|... ..--+.|+|. + ++|++++.++. .+..... ...+..|....+.+|+..+.
T Consensus 80 t~~~~~~~~~~~~-------s~v~~~l~~~-~-~gT~l~~~~~~~~~~~~~~--~~~~~~GW~~~l~~L~~~l~ 142 (143)
T cd08900 80 TYTMHIGGTLLSA-------SLATVEFAPE-G-GGTRLTLTEQGAFLDGDDD--PAGREQGTAALLDNLAAELE 142 (143)
T ss_pred EEeeccCCccccc-------eEEEEEEEEC-C-CCEEEEEEEEEecccccch--hhhHHHHHHHHHHHHHHHHh
Confidence 2222122222211 1233567775 3 47999988764 2222211 13456777777888777664
No 66
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=87.14 E-value=19 Score=31.21 Aligned_cols=136 Identities=14% Similarity=0.137 Sum_probs=69.1
Q ss_pred EEEeccCCHHHHHHHHhCccchhHHHhhcc-eeEEEEEecC-CCeEEEEEEeecCC---CCCceEEEEeeEEEeCCCeEE
Q 015689 138 VTVFENCTPEILRDFYMDNDYRVRWDKTVV-EHKQLQVDKT-NGTEIGRIIKKFPL---LTPREYVLAWRLWEGRDQTFY 212 (402)
Q Consensus 138 ~~viedaspE~V~d~l~D~e~R~kWD~~v~-e~evLE~~~d-~~t~Ivy~v~k~P~---VS~RDFV~~rri~~~~dg~~~ 212 (402)
...|+ +|++.|++++.|++...+|-.--. ...+.+.+.. .+..-+++....+. -...++...-.+.+.+.+..+
T Consensus 5 ~r~i~-ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~p~~~i 83 (146)
T cd08895 5 HRVIA-APPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLELVPNERI 83 (146)
T ss_pred EEEEC-CCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEEcCCCEE
Confidence 44575 999999999999999999965211 1222222222 23333333222211 122334433334444333333
Q ss_pred EEEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCChhhHhhhHHhhHHHHHHHHHHHHH
Q 015689 213 CFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLNVGMAKLAFAKGIWSYVCKMDNALR 287 (402)
Q Consensus 213 Iv~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~~wLIN~a~~~g~~~~lkkL~~al~ 287 (402)
...-....+..| +. ..--|.|++. + ++|++++.+..-+.+ ........|--.+|.+|++.+.
T Consensus 84 ~~~~~~~~~~~~---~~-----~~v~~~~~~~-~-~~T~lt~~~~~~~~~---~~~~~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 84 VYTDVFDDPSLS---GE-----MTMTWTLSPV-S-GGTDVTIVQSGIPDG---IPPEDCELGWQESLANLAALVE 145 (146)
T ss_pred EEEEEecCCCCC---ce-----EEEEEEEEec-C-CCEEEEEEEeCCCch---hhhhHHHHHHHHHHHHHHHHhc
Confidence 333222233322 11 1344677876 3 479998776432222 2233556666677777777653
No 67
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=83.48 E-value=29 Score=30.09 Aligned_cols=136 Identities=13% Similarity=0.097 Sum_probs=71.5
Q ss_pred EEEEEeccCCHHHHHHHHhCccchhHHHhhcc-eeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeCCCeEEEE
Q 015689 136 LSVTVFENCTPEILRDFYMDNDYRVRWDKTVV-EHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCF 214 (402)
Q Consensus 136 K~~~viedaspE~V~d~l~D~e~R~kWD~~v~-e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~dg~~~Iv 214 (402)
.....|+ +|+++|++.+.|++...+|-..-. .....+.+...|-...+... .+ .+.++...-.+.+.+....++.
T Consensus 3 ~i~r~~~-ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~-~~--~g~~~~~~g~~~ei~p~~~l~~ 78 (142)
T cd07826 3 VITREFD-APRELVFRAHTDPELVKRWWGPRGLTMTVCECDIRVGGSYRYVHR-AP--DGEEMGFHGVYHEVTPPERIVQ 78 (142)
T ss_pred EEEEEEC-CCHHHHHHHhCCHHHHhhccCCCCCcceEEEEeccCCCEEEEEEE-CC--CCCEecceEEEEEEcCCCEEEE
Confidence 3455676 999999999999999999965432 12223222233333332211 11 1222222222333333333333
Q ss_pred EEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC--hhhHhhhHHhhHHHHHHHHHHHHH
Q 015689 215 SKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALR 287 (402)
Q Consensus 215 ~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~--~wLIN~a~~~g~~~~lkkL~~al~ 287 (402)
.-..+. .|. . ....-+.|++. + ++|++++.... +.-. .-.....+..|....+.+|.+.+.
T Consensus 79 t~~~~~--~~~--~-----~s~v~~~l~~~-~-~gT~l~l~~~~-~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 79 TEEFEG--LPD--G-----VALETVTFTEL-G-GRTRLTATSRY-PSKEARDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred EeEecC--CCC--C-----ceEEEEEEEEC-C-CCEEEEEEEEe-CCHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 322222 121 1 12335678886 3 47999875332 2111 234555677888889998888764
No 68
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=82.73 E-value=34 Score=30.34 Aligned_cols=139 Identities=12% Similarity=0.027 Sum_probs=69.1
Q ss_pred CeEEEEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeCCCeE
Q 015689 132 PLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTF 211 (402)
Q Consensus 132 ~~~yK~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~dg~~ 211 (402)
...++.+.+|+ +|+|.|++.+.|++...+|-. -.. ..++- ...+...+.+....+.. |...-.+.+...+..
T Consensus 7 ~~~~~~er~i~-aP~e~Vf~A~Tdpe~l~~W~~-~~~-~~~d~-r~gg~~~~~~~~~~g~~----~~~~~~~~~v~p~~r 78 (149)
T COG3832 7 DRTLEIERLID-APPEKVFEALTDPELLARWFM-PGG-AEFDA-RTGGGERVRFRGPDGPV----HSFEGEYLEVVPPER 78 (149)
T ss_pred CceEEEEEeec-CCHHHHHHHhcCHHHHHhhcC-CCC-Cccce-ecCCceEEeeecCCCCe----eecceEEEEEcCCcE
Confidence 45677888886 999999999999999999988 332 11111 11223333332222221 233223333333444
Q ss_pred EEEEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC--hhhHhhhHHhhHHHHHHHHHHHH
Q 015689 212 YCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNAL 286 (402)
Q Consensus 212 ~Iv~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~--~wLIN~a~~~g~~~~lkkL~~al 286 (402)
++++-.-+....|. .....-+.+.|..+..++.++...+.-- .. .-.....+..|....+.+|...+
T Consensus 79 Iv~tw~~~~~~~~~-------~~~~v~~~l~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~Gw~~~~~~l~~~l 147 (149)
T COG3832 79 IVFTWDFDEDGEPF-------LKSLVTITLTPEDDGGTTTLVRTSGGGF-LEDEDQKLGMGMEEGWGQLLDNLKALL 147 (149)
T ss_pred EEEEeccCCCCCcc-------cCceEEEEEEEecCCCcEEEEEEeeccc-cchhHHHhCcchhhhHHHHHHHHHHhh
Confidence 44443333333333 2233445666643221444443332211 11 22222334666777777776655
No 69
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=79.45 E-value=46 Score=29.81 Aligned_cols=139 Identities=13% Similarity=0.140 Sum_probs=72.3
Q ss_pred EEEeccCCHHHHHHHHhCccchhHHHhhcc----eeEEEEEecCCCeEEEEEEe----ecC-----CCCCceEEEEeeEE
Q 015689 138 VTVFENCTPEILRDFYMDNDYRVRWDKTVV----EHKQLQVDKTNGTEIGRIIK----KFP-----LLTPREYVLAWRLW 204 (402)
Q Consensus 138 ~~viedaspE~V~d~l~D~e~R~kWD~~v~----e~evLE~~~d~~t~Ivy~v~----k~P-----~VS~RDFV~~rri~ 204 (402)
...++ +|+++|++++.|.+|...=-..+. +...++. .+++..+..... ++| ++..+--+.....|
T Consensus 4 ~~~~~-~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~-~~~g~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e~w 81 (159)
T PF10698_consen 4 SVEYP-APVERVWAAFTDEDYWEARCAALGADNAEVESFEV-DGDGVRVTVRQTVPADKLPSAARKFVGGDLRVTRTETW 81 (159)
T ss_pred EEEcC-CCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEE-cCCeEEEEEEEecChhhCCHHHHHhcCCCeEEEEEEEE
Confidence 45676 999999999999887433222221 2233333 233333332221 456 24554334334556
Q ss_pred Ee-CCCeEEEEEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC--hhhHhhhHHhhHHHHHHH
Q 015689 205 EG-RDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCK 281 (402)
Q Consensus 205 ~~-~dg~~~Iv~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~--~wLIN~a~~~g~~~~lkk 281 (402)
.. +|+.+- ....++-+..| .-+. +...++| +..+|++.+-....-+.+ .-.|..++...+-..+..
T Consensus 82 ~~~~~g~~~-g~~~~~~~G~P---~~~~-----G~~~L~~--~~~gt~~~~~g~v~v~VPlvGgkiE~~v~~~~~~~~~~ 150 (159)
T PF10698_consen 82 TPLDDGRRT-GTFTVSIPGAP---VSIS-----GTMRLRP--DGGGTRLTVEGEVKVKVPLVGGKIEKAVAENLRKLLEA 150 (159)
T ss_pred ecCCCCeEE-EEEEEEecCce---EEEE-----EEEEEec--CCCCEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHH
Confidence 43 344433 23333333333 2233 4455666 345799988888887776 344444455555555555
Q ss_pred HHHHHHhh
Q 015689 282 MDNALRNY 289 (402)
Q Consensus 282 L~~al~kY 289 (402)
-.....+|
T Consensus 151 e~~~~~~w 158 (159)
T PF10698_consen 151 EQEFTAEW 158 (159)
T ss_pred HHHHHHhh
Confidence 55544443
No 70
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=79.43 E-value=0.46 Score=51.30 Aligned_cols=73 Identities=14% Similarity=0.064 Sum_probs=60.5
Q ss_pred ecCCCCCceEEEEeeEEEeCCCeEEEEEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC--hh
Q 015689 188 KFPLLTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN--VG 265 (402)
Q Consensus 188 k~P~VS~RDFV~~rri~~~~dg~~~Iv~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~--~w 265 (402)
.+-+...|||+..| |.++++..+++|...+.-.| ||+.+..+.|.|+|. +...++++++...|.+|. .|
T Consensus 572 s~~ph~~~~~~ViR-------gacv~a~~svk~~~a~~l~~-vrA~~~~~r~liep~-g~g~sr~~~i~r~dlkg~~~~w 642 (674)
T KOG2200|consen 572 SMRPHPSRDFGVIR-------GACVLAPLSVKVSMAIQLGG-VRATVLDSRFLIEPC-GGGQSRVTHICRVDLKGRSPEW 642 (674)
T ss_pred ccCCCCCCCceeee-------eeeeecccccchhhhhhhcc-chhhhhhhhhhcccc-CCcchhhhhhhhhhcccCCchh
Confidence 34456999999986 56788889999977777777 999999999999997 666789999999999999 56
Q ss_pred hHhh
Q 015689 266 MAKL 269 (402)
Q Consensus 266 LIN~ 269 (402)
.-+.
T Consensus 643 y~k~ 646 (674)
T KOG2200|consen 643 YNKS 646 (674)
T ss_pred hhcc
Confidence 6543
No 71
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=76.28 E-value=49 Score=28.36 Aligned_cols=125 Identities=9% Similarity=0.039 Sum_probs=65.3
Q ss_pred EEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEE-EEEeecCCCCCceEEEEeeEEEeCCCeEEEE
Q 015689 136 LSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIG-RIIKKFPLLTPREYVLAWRLWEGRDQTFYCF 214 (402)
Q Consensus 136 K~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Iv-y~v~k~P~VS~RDFV~~rri~~~~dg~~~Iv 214 (402)
+....|+ +|+++|++.+.|++...+|=..-... + ...|-.+. ++...-+ ++ .. ++.+.+.+..+..
T Consensus 3 ~~~~~i~-ap~e~Vw~a~t~p~~l~~W~~~~~~~---~--~~~Gg~~~~~~~~~~~-----~~-~g-~~~~~~p~~~l~~ 69 (136)
T cd08901 3 KTAMLIR-RPVAEVFEAFVDPEITTKFWFTGSSG---R--LEEGKTVTWDWEMYGA-----SV-PV-NVLEIEPNKRIVI 69 (136)
T ss_pred eEEEEec-CCHHHHHHHhcCHHHhccccccCCCc---c--ccCCCEEEEEEEccCC-----ce-EE-EEEEEcCCCEEEE
Confidence 3455675 99999999999999999984332221 1 12233322 2221111 11 11 2223322323332
Q ss_pred EEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC-h-hhH-hhhHHhhHHHHHHHHHHHHH
Q 015689 215 SKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN-V-GMA-KLAFAKGIWSYVCKMDNALR 287 (402)
Q Consensus 215 ~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~-~-wLI-N~a~~~g~~~~lkkL~~al~ 287 (402)
.- ..+ + ....-.|.|.+. ++++|++++.+ .++... . .+. ...+..|...++.+|+..+.
T Consensus 70 ~w--~~~------~----~~s~v~~~l~~~-~~ggT~ltl~~-~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~le 131 (136)
T cd08901 70 EW--GDP------G----EPTTVEWTFEEL-DDGRTFVTITE-SGFPGTDDEGLKQALGSTEGWTLVLAGLKAYLE 131 (136)
T ss_pred Ee--cCC------C----CCEEEEEEEEEC-CCCcEEEEEEE-CCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 21 111 1 123346788886 43589999874 444333 2 221 22345778888888887765
No 72
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=65.93 E-value=64 Score=31.06 Aligned_cols=122 Identities=12% Similarity=0.092 Sum_probs=72.4
Q ss_pred EEEEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeCCCeEEE
Q 015689 134 KYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYC 213 (402)
Q Consensus 134 ~yK~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~dg~~~I 213 (402)
.|...-.+ +++|+++++++.|.+.+++..+.|+..++.++.+ ++..+.--...||++.-| |+..... ...+ ++
T Consensus 69 ~Y~errli-gysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P-~~~~kA~LeVGFk~l~E~-y~S~Vt~-~~p~---l~ 141 (227)
T KOG3177|consen 69 AYSERRLI-GYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRP-SGPLKADLEVGFKPLDER-YTSNVTC-VKPH---LT 141 (227)
T ss_pred HHHHHhhh-CCCHHHHHHHHHhHHHhhccccceeccceeecCC-CCCceeeEEecCcccchh-heeeeEE-eccc---ce
Confidence 34444445 5999999999999999999999999999999854 344444344456653333 3332111 1111 11
Q ss_pred EEEeecCCCCCCCCCeEEEE-EeeEEEEEEeeCCC-CceEEEEEEEecCCCC--hhhHhhhHH
Q 015689 214 FSKECDHPLAPPQRKYVRVT-YFRSGWHIKKVPGR-DACEIRIFHQEDAGLN--VGMAKLAFA 272 (402)
Q Consensus 214 v~kSVehp~~P~~kg~VR~e-~~~sgwvIrpv~g~-~~~kVt~i~~~DpgG~--~wLIN~a~~ 272 (402)
.+.-.++ |-. ..+.-|.|.|-++- +.|.+.+-.--..+-. .-+++++..
T Consensus 142 kt~~~d~----------rLF~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~S~lhs~va~~Ffd 194 (227)
T KOG3177|consen 142 KTVCADG----------RLFNHLITIWSFKPGPNIPRTCTLDFSVSFEFKSLLHSQVATIFFD 194 (227)
T ss_pred EEeeccc----------cHHHhhhheeeeccCCCCCCeEEEEEEEEEEehhHHHHHHHHHHHH
Confidence 1111111 222 24788999986522 3788877655555544 455555544
No 73
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=64.72 E-value=85 Score=26.39 Aligned_cols=137 Identities=9% Similarity=-0.011 Sum_probs=67.3
Q ss_pred EEEEEEeccCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeCCCeEEEE
Q 015689 135 YLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCF 214 (402)
Q Consensus 135 yK~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~dg~~~Iv 214 (402)
+.....|+ +|+++|++++.|++...+|..-.. .... .. ....+.. .++- .+-......+.+.+.+..+..
T Consensus 3 i~~~i~i~-a~~e~Vw~~~td~~~~~~W~~~~~--~~~~--~~--~~~~g~~-~~~~--~~~~~~~~~i~~~~p~~~l~~ 72 (145)
T cd08898 3 IERTILID-APRERVWRALTDPEHFGQWFGVKL--GPFV--VG--EGATGEI-TYPG--YEHGVFPVTVVEVDPPRRFSF 72 (145)
T ss_pred eEEEEEec-CCHHHHHHHhcChhhhhhcccccC--CCcc--cC--CcceeEE-ecCC--CCccceEEEEEEeCCCcEEEE
Confidence 34456676 999999999999999999987542 0111 11 1111111 1111 110111112223222222222
Q ss_pred E-Eeec-CCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC---hhhHhhhHHhhHHHHHHHHHHHHH
Q 015689 215 S-KECD-HPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN---VGMAKLAFAKGIWSYVCKMDNALR 287 (402)
Q Consensus 215 ~-kSVe-hp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~---~wLIN~a~~~g~~~~lkkL~~al~ 287 (402)
. .... .+..+. .+......-|.|+|. + ++|+|++.+.--.... ..-....+..|...+|.+|++.|.
T Consensus 73 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~-~gT~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le 144 (145)
T cd08898 73 RWHPPAIDPGEDY----SAEPSTLVEFTLEPI-A-GGTLLTVTESGFDALPAERRAEAYRMNEGGWDEQLENLVAYVE 144 (145)
T ss_pred EecCCCccccccc----CCCCceEEEEEEEec-C-CcEEEEEEEcCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 2 1111 001111 111123456788886 4 4799998875322221 111233567788888888888764
No 74
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=59.65 E-value=1.1e+02 Score=25.95 Aligned_cols=128 Identities=8% Similarity=0.034 Sum_probs=63.3
Q ss_pred EEEEEeccCCHHHHHHHHhCccchhHHHhhcceeE--EEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeCCCeEEE
Q 015689 136 LSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHK--QLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYC 213 (402)
Q Consensus 136 K~~~viedaspE~V~d~l~D~e~R~kWD~~v~e~e--vLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~dg~~~I 213 (402)
.....|+ +|+++|++.+.|++...+|-.-..... ..+.+...|-.+.+... .| =...++...-.+.+.+.+..+.
T Consensus 3 ~~~~~~~-ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~d~~~GG~~~~~~~-~~-~g~~~~~~~g~~~ei~p~~~l~ 79 (133)
T cd08897 3 TVETTVD-APIEKVWEAWTTPEHITKWNFASDDWHCPSAENDLRVGGKFSYRME-AK-DGSMGFDFEGTYTEVEPHKLIE 79 (133)
T ss_pred EEEEEeC-CCHHHHHHHhCCHHHHhhCCCCCCCcccceeeecCCcCCEEEEEEE-cC-CCCcccccceEEEEECCCCEEE
Confidence 3455676 999999999999999999943211111 11111223333322211 11 0011111111222322232332
Q ss_pred EEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCChhhHhhhHHhhHHHHHHHHHHHHH
Q 015689 214 FSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLNVGMAKLAFAKGIWSYVCKMDNALR 287 (402)
Q Consensus 214 v~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~~wLIN~a~~~g~~~~lkkL~~al~ 287 (402)
..- .. + ....+.|+|. + ++|+++..+. .. ... +...+..|....+.+|++.|.
T Consensus 80 ~~~----~~-----~------~~v~~~l~~~-~-~gT~l~l~~~-~~--~~~-~~~~~~~GW~~~l~~L~~~le 132 (133)
T cd08897 80 YTM----ED-----G------REVEVEFTEE-G-DGTKVVETFD-AE--NEN-PVEMQRQGWQAILDNFKKYVE 132 (133)
T ss_pred EEc----CC-----C------CEEEEEEEEC-C-CCEEEEEEEC-CC--CCC-cHHHHHHHHHHHHHHHHHHhh
Confidence 221 00 1 1346888885 4 4799987632 21 111 222456777788888887763
No 75
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=48.11 E-value=1.8e+02 Score=25.07 Aligned_cols=138 Identities=10% Similarity=0.072 Sum_probs=69.6
Q ss_pred EEEEEeccCCHHHHHHHHhCccchhHHHhh---cc--eeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeCCCe
Q 015689 136 LSVTVFENCTPEILRDFYMDNDYRVRWDKT---VV--EHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQT 210 (402)
Q Consensus 136 K~~~viedaspE~V~d~l~D~e~R~kWD~~---v~--e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~dg~ 210 (402)
+.+.+|+ ||++.|++.+.| ...+|=.- .. .....+.+...|-...+ ..+ ..+++... ++.+.+...
T Consensus 3 ~~~~~i~-Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~d~~~GG~~~~---~~~--~g~~~~~g-~v~~v~p~~ 73 (149)
T cd08891 3 RKSVTVP-APPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVFEPRAGGRWYE---IGE--DGTECEWG-TVLAWEPPS 73 (149)
T ss_pred EEEEEec-CCHHHHHHHHHh--chhhccCCCcccccCCCccEEEcccCCcEEEE---ecC--CCcEeceE-EEEEEcCCC
Confidence 4566776 999999999998 36677421 10 01112222223332221 122 34454332 333333333
Q ss_pred EEEEEEeecCCCCCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCC---C-hhhHhhhHHhhHHHHHHHHHHHH
Q 015689 211 FYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGL---N-VGMAKLAFAKGIWSYVCKMDNAL 286 (402)
Q Consensus 211 ~~Iv~kSVehp~~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG---~-~wLIN~a~~~g~~~~lkkL~~al 286 (402)
.+...-......-|.... ...--|.|+|. ++++|++++.+.--... + ...+...+..|...+|.+|+..|
T Consensus 74 ~l~~tw~~~~~~~~~~~~-----~t~vt~~l~~~-~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l 147 (149)
T cd08891 74 RLVFTWQINADWRPDPDK-----ASEVEVRFEAV-GAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAA 147 (149)
T ss_pred EEEEEeccCCCcCcCCCC-----ceEEEEEEEEC-CCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHh
Confidence 333332211111111111 12456888986 42479998776543221 1 23344567788888999998877
Q ss_pred Hh
Q 015689 287 RN 288 (402)
Q Consensus 287 ~k 288 (402)
.+
T Consensus 148 ~~ 149 (149)
T cd08891 148 EK 149 (149)
T ss_pred cC
Confidence 53
No 76
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=47.50 E-value=8.2 Score=33.71 Aligned_cols=14 Identities=14% Similarity=0.430 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHHHH
Q 015689 25 NATLIALFIILVYH 38 (402)
Q Consensus 25 ~~~~~~~~~~~~~~ 38 (402)
|++++++++|+++-
T Consensus 5 ~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 5 FAIIIVAILLFLFL 18 (130)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 77
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=40.95 E-value=20 Score=31.28 Aligned_cols=18 Identities=6% Similarity=0.060 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHHHhhhh
Q 015689 25 NATLIALFIILVYHLSKT 42 (402)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~ 42 (402)
|+.++++++++++-|...
T Consensus 2 W~l~~iii~~i~l~~~~~ 19 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLF 19 (130)
T ss_pred eeeHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 78
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=37.26 E-value=2.7e+02 Score=23.92 Aligned_cols=122 Identities=13% Similarity=0.118 Sum_probs=59.8
Q ss_pred cCCHHHHHHHHhCccchhHHHhhcceeEEEEEecCCCeEEEEEEeecCCCCCceEEEEeeEEEeCCCeEEEEEEeecCCC
Q 015689 143 NCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCFSKECDHPL 222 (402)
Q Consensus 143 daspE~V~d~l~D~e~R~kWD~~v~e~evLE~~~d~~t~Ivy~v~k~P~VS~RDFV~~rri~~~~dg~~~Iv~kSVehp~ 222 (402)
+||+|+|++.+.|++...+|-.. ..+ .++- ..|-...+. + +. +.. ++.+.+.+..++..-... .
T Consensus 2 ~ap~e~Vw~A~Tdp~~l~~w~~~-~~~-~~d~--~~GG~f~~~---~-----~~-~~G-~~~ev~pp~rlv~tw~~~--~ 65 (132)
T PTZ00220 2 YVPPEVLYNAFLDAYTLTRLSLG-SPA-EMDA--KVGGKFSLF---N-----GS-VEG-EFTELEKPKKIVQKWRFR--D 65 (132)
T ss_pred CCCHHHHHHHHcCHHHHHHHhcC-CCc-cccC--CcCCEEEEe---c-----Cc-eEE-EEEEEcCCCEEEEEEecC--C
Confidence 49999999999999999999421 111 1221 222221111 0 11 111 122222222233222111 1
Q ss_pred CCCCCCeEEEEEeeEEEEEEeeCCCCceEEEEEEEecCCCC---hhhHhhhHHhhHHH-HHHHHHHHHH
Q 015689 223 APPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN---VGMAKLAFAKGIWS-YVCKMDNALR 287 (402)
Q Consensus 223 ~P~~kg~VR~e~~~sgwvIrpv~g~~~~kVt~i~~~DpgG~---~wLIN~a~~~g~~~-~lkkL~~al~ 287 (402)
.++ ... ...-+.|+|. ++++|++++.+.--+... .......+..|... ++.+|+..+.
T Consensus 66 ~~~-~~~-----s~vt~~~~~~-~~g~T~lt~~~~g~~~~~~~~~~~~~~~~~~GW~~~~ld~L~~~l~ 127 (132)
T PTZ00220 66 WEE-DVY-----SKVTIEFRAV-EEDHTELKLTQTGIPSLDKFGNGGCLERCRNGWTQNFLDRFEKILG 127 (132)
T ss_pred CCC-CCc-----eEEEEEEEeC-CCCcEEEEEEEecCccccccCCCchhhHHHhChHHHHHHHHHHHhC
Confidence 111 111 2345778875 335799998877333222 11233345677777 5888877653
No 79
>PF04707 PRELI: PRELI-like family; InterPro: IPR006797 These proteins contain a conserved region found in the yeast YLR168C gene MSF1 product. The function of this protein is unknown, though it is thought to be involved in intra-mitochondrial protein sorting. GFP-tagged MSF1 localizes to mitochondria and is required for wild-type respiratory growth []. This region is also found in a number of other eukaryotic proteins. The PRELI/MSF1 domain is an eukaryotic protein module which occurs in stand-alone form in several proteins, including the human PRELI protein and the yeast MSF1 protein, and as an amino-terminal domain in an orthologous group of proteins typified by human SEC14L1, which is conserved in all animals. In this group of proteins, the PRELI/MSF1 domain co-occurs with the CRAL-TRIO (see PDOC50191 from PROSITEDOC) and the GOLD domains (see PDOC50866 from PROSITEDOC). The PRELI/MSF1 domain is approximately 170 residues long and is predicted to assume a globular alpha + beta fold with six beta strands and four alpha helices. It has been suggested that the PRELI/MSF1 domain may have a function associated with cellular membrane [].
Probab=32.70 E-value=3.7e+02 Score=24.13 Aligned_cols=115 Identities=7% Similarity=0.030 Sum_probs=64.6
Q ss_pred HHHhhcceeEEEEEecCCCeEEEEEE------eecC-C----CCCceEEEE--eeEEEeCCCeEEEEEEeecCCCCCCCC
Q 015689 161 RWDKTVVEHKQLQVDKTNGTEIGRII------KKFP-L----LTPREYVLA--WRLWEGRDQTFYCFSKECDHPLAPPQR 227 (402)
Q Consensus 161 kWD~~v~e~evLE~~~d~~t~Ivy~v------~k~P-~----VS~RDFV~~--rri~~~~dg~~~Iv~kSVehp~~P~~k 227 (402)
...+.+....+|+...+++ ...|+. ..+| + +...+.++. ..+.+..+.++.+.++.+.| .
T Consensus 14 p~~~hVl~~Dvl~r~vd~~-g~l~t~Rl~~~~~~~P~w~~kl~g~~~~~~~~E~S~vD~~~k~l~~~t~Nls~------~ 86 (157)
T PF04707_consen 14 PYSPHVLSVDVLDREVDPD-GKLHTKRLITKKNNLPRWLKKLIGVDSECYIIEESIVDPKNKTLTTKTRNLSF------S 86 (157)
T ss_pred CCCCceeEEEEEEEEEcCC-CcEEEeeeeeeecCchHHHHHHhCcCceEEEEEEEEEECCCCEEEEEEEEccc------C
Confidence 4556788888898865552 223321 2566 2 342443333 34456666777777788776 5
Q ss_pred CeEEEEEeeEEEEEEeeCCC-CceEEEEEEEecCCCC-hhhHhhhHHhhHHHHHHHHHHH
Q 015689 228 KYVRVTYFRSGWHIKKVPGR-DACEIRIFHQEDAGLN-VGMAKLAFAKGIWSYVCKMDNA 285 (402)
Q Consensus 228 g~VR~e~~~sgwvIrpv~g~-~~~kVt~i~~~DpgG~-~wLIN~a~~~g~~~~lkkL~~a 285 (402)
+++.++-. +. .+|.+++ +.|.+......+.+|. ..+.+.+-.-++-.|-++..++
T Consensus 87 ~~~~v~E~-~~--Y~~~p~np~~T~~~q~a~i~~~~~~~~~~~~iE~~~~~~f~~na~kg 143 (157)
T PF04707_consen 87 SFLSVEET-CV--YKPHPDNPNWTLFKQEATISIKGSFSGFSSRIEKFSVSRFKSNAKKG 143 (157)
T ss_pred ceeEEEEE-EE--EEECCCCCCcceEEEEEEEEEeCchhhHhHHHHHHHHHHHHHHHHHH
Confidence 66777653 33 4444443 4799988888888774 3333333333333444444444
No 80
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=23.19 E-value=93 Score=25.94 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=36.4
Q ss_pred ccCCCHHHHHHHHHHhhccC-CCCCCCeEEEecCCcEEEEeeeeccCCCCCeEEEEEEEeccCCHHHHHHHHh
Q 015689 83 SEIVSDADLKFLIETLEDNF-SENDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYM 154 (402)
Q Consensus 83 ~~~vsdedl~~ll~llee~~-~~~~~Wklv~ek~gikVyyka~r~~p~~G~~~yK~~~viedaspE~V~d~l~ 154 (402)
....+.++++++++.+.+.. ..+...++..+++.-.++.+. .+.++|-. |..+|+|+++++..
T Consensus 31 ~~~~~~e~l~~~v~~ln~~~~~~~~~l~F~vde~~~~~vVkV--iD~~T~eV-------IRqIP~Ee~l~l~~ 94 (107)
T PF03646_consen 31 QKEPSKEELEEAVEKLNEFLQALNTSLRFSVDEESGRVVVKV--IDKETGEV-------IRQIPPEELLDLAK 94 (107)
T ss_dssp -----HHHHHHHHHHHHHHHTTSS--EEEEEEEETTEEEEEE--EETTT-SE-------EEEE-HHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCcEEEEE--EECCCCcE-------EEeCCcHHHHHHHH
Confidence 35788999999998887642 234567777777755555543 35555532 23479999999874
No 81
>COG3462 Predicted membrane protein [Function unknown]
Probab=21.81 E-value=1.6e+02 Score=25.55 Aligned_cols=22 Identities=9% Similarity=0.318 Sum_probs=17.3
Q ss_pred ccCccccCCCHHHHHHHHHHhh
Q 015689 78 RSQSRSEIVSDADLKFLIETLE 99 (402)
Q Consensus 78 ~~~~~~~~vsdedl~~ll~lle 99 (402)
.-++....+|||++++.+..++
T Consensus 95 kER~AkGEItEEEY~r~~~~ir 116 (117)
T COG3462 95 KERYAKGEITEEEYRRIIRTIR 116 (117)
T ss_pred HHHHhcCCCCHHHHHHHHHHhc
Confidence 4455688999999999887764
Done!