Query 015690
Match_columns 402
No_of_seqs 394 out of 2512
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:40:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015690.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015690hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00037 DnaJ_C chaperone prot 100.0 9E-101 2E-105 772.7 37.1 386 2-402 32-421 (421)
2 COG0484 DnaJ DnaJ-class molecu 100.0 6.2E-95 1.3E-99 705.8 33.1 334 2-346 8-351 (371)
3 PRK14296 chaperone protein Dna 100.0 2.7E-86 5.9E-91 661.3 34.7 333 2-345 8-361 (372)
4 KOG0712 Molecular chaperone (D 100.0 2.2E-87 4.8E-92 644.4 24.7 329 2-343 8-337 (337)
5 PRK14288 chaperone protein Dna 100.0 6.1E-85 1.3E-89 651.4 32.9 331 2-345 7-345 (369)
6 PRK14298 chaperone protein Dna 100.0 5.1E-83 1.1E-87 638.8 33.6 333 2-345 9-351 (377)
7 PRK14286 chaperone protein Dna 100.0 6.2E-83 1.4E-87 637.6 32.6 334 2-345 8-357 (372)
8 PRK14287 chaperone protein Dna 100.0 8.2E-83 1.8E-87 636.5 33.4 334 2-345 8-348 (371)
9 PRK14280 chaperone protein Dna 100.0 9.4E-83 2E-87 637.5 33.7 334 2-345 8-353 (376)
10 PRK14276 chaperone protein Dna 100.0 8.1E-83 1.8E-87 638.8 33.1 334 2-345 8-356 (380)
11 PRK14278 chaperone protein Dna 100.0 1.8E-82 3.9E-87 635.5 34.7 336 2-345 7-350 (378)
12 PRK14277 chaperone protein Dna 100.0 2.4E-82 5.2E-87 636.6 32.9 336 2-345 9-365 (386)
13 PRK14297 chaperone protein Dna 100.0 8.1E-82 1.8E-86 632.0 33.4 337 2-346 8-359 (380)
14 PRK14282 chaperone protein Dna 100.0 3.7E-81 8E-86 625.0 34.4 336 2-345 8-363 (369)
15 PRK14285 chaperone protein Dna 100.0 3.6E-81 7.9E-86 623.4 32.5 333 2-347 7-355 (365)
16 PRK14279 chaperone protein Dna 100.0 7.9E-81 1.7E-85 626.0 32.6 329 2-345 13-378 (392)
17 PRK14281 chaperone protein Dna 100.0 1.1E-80 2.3E-85 626.4 32.8 337 2-345 7-372 (397)
18 PRK14284 chaperone protein Dna 100.0 2.5E-80 5.4E-85 623.0 33.6 333 2-345 5-366 (391)
19 TIGR02349 DnaJ_bact chaperone 100.0 6E-80 1.3E-84 614.2 33.1 336 2-345 4-353 (354)
20 PRK14301 chaperone protein Dna 100.0 1.2E-79 2.7E-84 614.0 32.1 331 2-345 8-350 (373)
21 PRK14295 chaperone protein Dna 100.0 3E-79 6.6E-84 613.9 33.6 327 2-345 13-372 (389)
22 PRK14294 chaperone protein Dna 100.0 2.6E-79 5.7E-84 611.0 32.1 332 2-345 8-350 (366)
23 PRK14290 chaperone protein Dna 100.0 1.5E-78 3.3E-83 605.3 33.5 338 2-347 7-358 (365)
24 PRK10767 chaperone protein Dna 100.0 4.6E-78 1E-82 603.7 33.2 329 2-345 8-348 (371)
25 PRK14300 chaperone protein Dna 100.0 6.8E-78 1.5E-82 601.7 32.8 332 2-344 7-351 (372)
26 PRK14283 chaperone protein Dna 100.0 9.4E-78 2E-82 602.2 33.6 330 2-345 9-356 (378)
27 PRK14293 chaperone protein Dna 100.0 1.3E-77 2.9E-82 600.3 32.5 338 2-345 7-354 (374)
28 PRK14291 chaperone protein Dna 100.0 1.4E-77 3.1E-82 601.3 32.5 334 2-346 7-371 (382)
29 PRK14292 chaperone protein Dna 100.0 6.9E-77 1.5E-81 595.2 33.8 334 2-344 6-347 (371)
30 PRK14289 chaperone protein Dna 100.0 2.1E-76 4.5E-81 594.3 32.9 337 2-345 9-364 (386)
31 PRK14299 chaperone protein Dna 100.0 1.3E-60 2.8E-65 462.6 24.9 258 2-344 8-285 (291)
32 PRK10266 curved DNA-binding pr 100.0 7.6E-59 1.6E-63 453.5 25.8 274 2-345 8-293 (306)
33 KOG0713 Molecular chaperone (D 100.0 4.8E-48 1E-52 367.6 9.8 300 2-333 20-328 (336)
34 TIGR03835 termin_org_DnaJ term 100.0 2.9E-41 6.3E-46 348.4 22.9 124 197-326 689-812 (871)
35 KOG0715 Molecular chaperone (D 100.0 2.5E-40 5.5E-45 318.5 11.9 238 2-267 47-288 (288)
36 KOG0714 Molecular chaperone (D 99.9 3E-25 6.6E-30 214.1 14.0 245 2-309 7-305 (306)
37 PF01556 CTDII: DnaJ C termina 99.9 4.9E-22 1.1E-26 156.6 7.6 81 256-338 1-81 (81)
38 PHA03102 Small T antigen; Revi 99.8 1.7E-20 3.6E-25 163.5 5.1 81 1-87 8-90 (153)
39 KOG0716 Molecular chaperone (D 99.8 2.1E-20 4.6E-25 173.4 4.6 64 2-65 35-102 (279)
40 PTZ00341 Ring-infected erythro 99.8 8E-20 1.7E-24 193.9 4.2 65 2-66 577-644 (1136)
41 KOG0718 Molecular chaperone (D 99.8 1.9E-19 4.2E-24 177.1 4.7 67 2-68 13-87 (546)
42 KOG0691 Molecular chaperone (D 99.7 7.3E-19 1.6E-23 168.5 2.1 81 2-87 9-93 (296)
43 KOG0717 Molecular chaperone (D 99.7 1.7E-18 3.7E-23 170.4 3.7 65 2-66 12-81 (508)
44 COG0484 DnaJ DnaJ-class molecu 99.7 3.4E-17 7.4E-22 160.7 12.7 213 13-260 48-346 (371)
45 COG2214 CbpA DnaJ-class molecu 99.7 6.3E-17 1.4E-21 149.2 12.4 59 2-60 10-73 (237)
46 KOG0719 Molecular chaperone (D 99.7 1.2E-17 2.7E-22 151.5 3.9 60 2-61 18-83 (264)
47 PF00226 DnaJ: DnaJ domain; I 99.7 2.3E-17 5E-22 123.9 3.3 57 1-57 3-64 (64)
48 KOG0624 dsRNA-activated protei 99.7 1.3E-16 2.8E-21 152.7 6.9 63 2-65 398-467 (504)
49 PRK10767 chaperone protein Dna 99.6 1.2E-15 2.5E-20 153.3 12.4 132 116-261 146-345 (371)
50 smart00271 DnaJ DnaJ molecular 99.6 2.6E-15 5.7E-20 111.0 5.6 52 1-52 4-60 (60)
51 KOG0721 Molecular chaperone (D 99.6 1.4E-15 3E-20 137.1 4.8 63 1-63 102-168 (230)
52 PRK14288 chaperone protein Dna 99.6 2.4E-14 5.3E-19 143.5 13.8 128 116-258 144-339 (369)
53 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.6 1E-14 2.2E-19 110.3 7.2 65 133-199 1-66 (66)
54 KOG0550 Molecular chaperone (D 99.6 2.4E-15 5.2E-20 147.1 4.7 80 2-84 377-461 (486)
55 cd06257 DnaJ DnaJ domain or J- 99.5 1.2E-14 2.7E-19 105.4 5.4 49 1-49 3-55 (55)
56 PTZ00100 DnaJ chaperone protei 99.5 7.7E-14 1.7E-18 115.7 6.0 47 2-48 69-115 (116)
57 PRK14282 chaperone protein Dna 99.5 1.4E-13 3.1E-18 138.1 9.0 132 116-261 156-360 (369)
58 KOG0722 Molecular chaperone (D 99.4 3.8E-14 8.3E-19 130.1 2.4 58 2-59 37-97 (329)
59 PRK14294 chaperone protein Dna 99.4 4.5E-13 9.6E-18 134.4 8.4 133 116-262 148-348 (366)
60 PRK14285 chaperone protein Dna 99.4 5E-13 1.1E-17 133.9 8.7 131 116-260 150-349 (365)
61 PHA02624 large T antigen; Prov 99.4 1.8E-13 3.9E-18 141.7 5.4 56 1-56 14-71 (647)
62 PRK14290 chaperone protein Dna 99.4 4.6E-13 9.9E-18 134.3 7.9 131 116-261 153-353 (365)
63 PRK14298 chaperone protein Dna 99.4 4.7E-13 1E-17 134.5 7.9 132 116-261 145-348 (377)
64 PRK01356 hscB co-chaperone Hsc 99.4 2.9E-13 6.3E-18 120.6 4.7 58 1-58 5-71 (166)
65 PRK05014 hscB co-chaperone Hsc 99.4 4.1E-13 8.8E-18 120.4 5.2 58 1-58 4-72 (171)
66 PRK14277 chaperone protein Dna 99.4 1.5E-12 3.2E-17 131.5 9.0 128 116-257 159-358 (386)
67 PRK14279 chaperone protein Dna 99.3 1.7E-12 3.7E-17 131.2 8.4 128 116-257 177-371 (392)
68 PRK14301 chaperone protein Dna 99.3 1.8E-12 4E-17 130.1 8.4 131 116-260 148-346 (373)
69 PRK14284 chaperone protein Dna 99.3 2.2E-12 4.7E-17 130.5 8.3 131 116-260 162-362 (391)
70 PRK14300 chaperone protein Dna 99.3 2.8E-12 6.1E-17 128.9 7.9 129 116-258 149-346 (372)
71 PRK14287 chaperone protein Dna 99.3 3.4E-12 7.3E-17 128.2 6.9 131 116-260 142-344 (371)
72 PRK00294 hscB co-chaperone Hsc 99.3 2.6E-12 5.5E-17 115.1 5.3 58 1-58 7-75 (173)
73 PRK14295 chaperone protein Dna 99.3 6.6E-12 1.4E-16 126.8 8.5 129 116-258 170-366 (389)
74 PRK03578 hscB co-chaperone Hsc 99.3 2.8E-12 6.1E-17 115.3 5.1 58 1-58 9-77 (176)
75 TIGR02349 DnaJ_bact chaperone 99.3 6.9E-12 1.5E-16 125.4 8.3 129 116-258 147-347 (354)
76 PRK14278 chaperone protein Dna 99.3 1E-11 2.2E-16 125.0 9.4 128 116-257 143-343 (378)
77 PRK14286 chaperone protein Dna 99.3 9.9E-12 2.2E-16 124.8 8.7 129 116-258 154-351 (372)
78 PRK14293 chaperone protein Dna 99.3 9.1E-12 2E-16 125.3 8.4 132 116-261 147-351 (374)
79 PRK14276 chaperone protein Dna 99.2 1.3E-11 2.9E-16 124.3 8.1 129 116-258 150-350 (380)
80 PRK14280 chaperone protein Dna 99.2 1.7E-11 3.7E-16 123.4 8.7 129 116-258 147-347 (376)
81 PRK14281 chaperone protein Dna 99.2 2.3E-11 5E-16 123.2 8.7 125 116-255 167-363 (397)
82 PRK14292 chaperone protein Dna 99.2 2.1E-11 4.6E-16 122.6 8.0 131 116-259 143-343 (371)
83 PRK14296 chaperone protein Dna 99.2 3.1E-11 6.8E-16 121.2 8.4 128 116-257 153-354 (372)
84 PRK14297 chaperone protein Dna 99.2 4.6E-11 1E-15 120.4 8.6 127 116-256 152-350 (380)
85 KOG0720 Molecular chaperone (D 99.2 1.1E-11 2.3E-16 123.0 3.6 58 2-59 239-299 (490)
86 PRK14289 chaperone protein Dna 99.2 4.8E-11 1E-15 120.6 8.0 124 117-254 159-354 (386)
87 PTZ00037 DnaJ_C chaperone prot 99.2 8.5E-11 1.8E-15 119.5 9.5 125 116-253 154-355 (421)
88 PRK14291 chaperone protein Dna 99.2 1.3E-10 2.9E-15 117.2 10.0 118 116-248 160-346 (382)
89 PRK14283 chaperone protein Dna 99.1 1.2E-10 2.6E-15 117.4 8.7 129 116-258 150-350 (378)
90 COG5407 SEC63 Preprotein trans 99.1 2.6E-11 5.7E-16 119.5 2.8 62 2-63 102-172 (610)
91 TIGR00714 hscB Fe-S protein as 99.0 2.6E-10 5.7E-15 100.9 5.0 50 10-59 3-61 (157)
92 PRK14299 chaperone protein Dna 98.9 3.4E-09 7.3E-14 103.2 9.0 72 250-331 125-196 (291)
93 PLN03165 chaperone protein dna 98.9 3.2E-09 6.9E-14 87.7 6.6 60 130-203 41-100 (111)
94 PRK01773 hscB co-chaperone Hsc 98.7 2E-08 4.3E-13 90.1 4.9 58 1-58 5-73 (173)
95 PRK10266 curved DNA-binding pr 98.7 6.7E-08 1.5E-12 94.8 9.0 75 252-330 115-202 (306)
96 KOG1789 Endocytosis protein RM 98.5 1.1E-07 2.3E-12 102.1 5.2 47 2-48 1285-1336(2235)
97 KOG0723 Molecular chaperone (D 98.4 4E-07 8.6E-12 73.4 5.5 49 2-50 60-108 (112)
98 COG5269 ZUO1 Ribosome-associat 98.4 2E-07 4.3E-12 87.0 4.1 58 3-60 48-114 (379)
99 KOG1150 Predicted molecular ch 98.4 1.5E-07 3.2E-12 84.2 3.1 54 1-54 56-114 (250)
100 PRK09430 djlA Dna-J like membr 98.4 2.7E-07 5.7E-12 88.7 4.8 31 2-32 204-234 (267)
101 TIGR02642 phage_xxxx uncharact 98.4 5.2E-07 1.1E-11 81.4 5.5 51 173-224 99-149 (186)
102 PF01556 CTDII: DnaJ C termina 98.4 2.4E-07 5.3E-12 72.8 2.8 48 205-252 27-76 (81)
103 KOG0712 Molecular chaperone (D 98.3 1.9E-06 4.2E-11 84.2 7.5 45 204-248 278-324 (337)
104 KOG0568 Molecular chaperone (D 98.1 2.9E-06 6.3E-11 77.6 4.3 48 2-49 51-102 (342)
105 PF00684 DnaJ_CXXCXGXG: DnaJ c 98.1 3.1E-06 6.7E-11 63.8 3.2 54 117-183 3-66 (66)
106 COG1107 Archaea-specific RecJ- 97.9 6.2E-06 1.3E-10 84.6 2.4 27 132-158 4-30 (715)
107 KOG2813 Predicted molecular ch 97.7 5.1E-05 1.1E-09 72.6 4.7 60 130-210 198-277 (406)
108 TIGR03835 termin_org_DnaJ term 97.5 0.00048 1E-08 73.6 9.5 64 2-65 6-72 (871)
109 PLN03165 chaperone protein dna 97.2 0.00027 5.8E-09 58.6 3.4 49 116-187 45-100 (111)
110 COG1107 Archaea-specific RecJ- 97.1 0.00053 1.1E-08 70.8 4.2 56 118-187 8-82 (715)
111 KOG2813 Predicted molecular ch 96.6 0.0013 2.8E-08 63.2 2.4 77 116-202 170-258 (406)
112 PF03656 Pam16: Pam16; InterP 95.9 0.011 2.3E-07 50.4 4.1 50 2-51 62-111 (127)
113 TIGR02642 phage_xxxx uncharact 95.9 0.005 1.1E-07 55.8 2.2 29 130-158 99-127 (186)
114 COG1076 DjlA DnaJ-domain-conta 94.6 0.019 4.2E-07 51.7 1.9 46 13-58 18-72 (174)
115 KOG3192 Mitochondrial J-type c 93.4 0.076 1.6E-06 46.3 3.3 47 12-58 24-79 (168)
116 KOG0724 Zuotin and related mol 91.4 0.18 3.9E-06 50.1 3.5 51 9-59 3-61 (335)
117 PF11833 DUF3353: Protein of u 90.6 0.52 1.1E-05 43.2 5.4 38 7-48 1-38 (194)
118 COG1076 DjlA DnaJ-domain-conta 90.4 0.1 2.2E-06 47.0 0.7 47 2-48 117-164 (174)
119 KOG0431 Auxilin-like protein a 89.3 0.21 4.6E-06 51.7 2.0 24 10-33 400-423 (453)
120 KOG0715 Molecular chaperone (D 88.2 0.2 4.2E-06 48.9 0.9 59 115-187 167-231 (288)
121 KOG2824 Glutaredoxin-related p 87.7 0.52 1.1E-05 45.0 3.4 51 131-196 230-280 (281)
122 cd03031 GRX_GRX_like Glutaredo 87.5 0.47 1E-05 41.5 2.8 24 131-159 100-123 (147)
123 TIGR00630 uvra excinuclease AB 80.5 1.1 2.4E-05 50.5 2.5 20 325-344 855-875 (924)
124 COG0178 UvrA Excinuclease ATPa 78.6 2.3 5E-05 46.7 4.1 33 148-184 732-764 (935)
125 KOG2824 Glutaredoxin-related p 77.6 2 4.3E-05 41.1 2.9 40 147-202 230-275 (281)
126 PF13446 RPT: A repeated domai 77.0 3.8 8.2E-05 30.0 3.7 41 2-49 9-49 (62)
127 smart00709 Zpr1 Duplicated dom 73.5 12 0.00027 33.1 6.7 20 206-225 81-100 (160)
128 PRK00349 uvrA excinuclease ABC 73.2 3 6.5E-05 47.2 3.4 33 148-184 740-772 (943)
129 PRK14714 DNA polymerase II lar 71.2 5.5 0.00012 45.7 4.8 62 120-202 658-722 (1337)
130 cd03031 GRX_GRX_like Glutaredo 70.2 5.5 0.00012 34.9 3.7 39 147-201 100-145 (147)
131 PRK00635 excinuclease ABC subu 69.3 3 6.5E-05 50.1 2.4 25 317-344 1721-1746(1809)
132 TIGR00310 ZPR1_znf ZPR1 zinc f 68.2 11 0.00024 34.5 5.3 35 148-182 2-39 (192)
133 PF12434 Malate_DH: Malate deh 66.3 6.6 0.00014 23.9 2.3 16 12-27 10-25 (28)
134 PF07709 SRR: Seven Residue Re 65.9 4 8.8E-05 20.9 1.2 13 36-48 2-14 (14)
135 PRK04023 DNA polymerase II lar 64.5 4.7 0.0001 45.2 2.5 67 114-203 610-677 (1121)
136 TIGR00630 uvra excinuclease AB 63.5 3.4 7.4E-05 46.7 1.3 11 149-159 739-749 (924)
137 PF07739 TipAS: TipAS antibiot 61.0 9 0.0002 31.4 3.1 52 5-61 51-104 (118)
138 COG1198 PriA Primosomal protei 55.2 14 0.00031 40.6 4.2 61 119-198 419-484 (730)
139 PRK00349 uvrA excinuclease ABC 51.5 6.3 0.00014 44.7 0.8 28 131-158 739-773 (943)
140 PF14687 DUF4460: Domain of un 51.4 31 0.00067 28.7 4.7 43 8-50 4-54 (112)
141 PRK00488 pheS phenylalanyl-tRN 50.8 16 0.00034 36.5 3.4 23 129-159 259-281 (339)
142 TIGR03655 anti_R_Lar restricti 50.5 25 0.00054 24.9 3.6 11 148-158 3-13 (53)
143 TIGR00757 RNaseEG ribonuclease 50.0 7.1 0.00015 40.1 0.9 27 161-187 378-404 (414)
144 PRK12336 translation initiatio 49.9 92 0.002 28.6 8.1 35 205-239 149-184 (201)
145 PF12991 DUF3875: Domain of un 49.3 21 0.00045 25.6 2.9 25 315-339 26-52 (54)
146 PRK00635 excinuclease ABC subu 47.6 8.7 0.00019 46.4 1.2 34 148-185 1609-1642(1809)
147 TIGR00595 priA primosomal prot 46.9 19 0.00041 38.0 3.5 52 130-200 213-264 (505)
148 PRK03564 formate dehydrogenase 44.2 29 0.00064 34.1 4.1 11 129-139 186-196 (309)
149 COG0178 UvrA Excinuclease ATPa 41.7 12 0.00026 41.4 1.1 28 131-158 731-765 (935)
150 PRK14559 putative protein seri 41.3 19 0.00041 39.2 2.5 49 131-198 2-50 (645)
151 PRK12380 hydrogenase nickel in 40.6 26 0.00056 29.1 2.7 28 129-156 69-96 (113)
152 PRK05580 primosome assembly pr 40.6 31 0.00067 37.8 4.0 51 130-199 381-431 (679)
153 PF03833 PolC_DP2: DNA polymer 40.6 9.2 0.0002 42.2 0.0 53 130-204 655-707 (900)
154 TIGR00340 zpr1_rel ZPR1-relate 40.5 60 0.0013 28.9 5.2 20 206-225 78-98 (163)
155 PF03589 Antiterm: Antitermina 40.1 11 0.00024 30.4 0.4 12 174-185 33-44 (95)
156 PF07092 DUF1356: Protein of u 38.5 19 0.00042 34.0 1.8 12 175-186 40-51 (238)
157 PRK00464 nrdR transcriptional 38.3 35 0.00075 30.1 3.2 35 148-182 2-37 (154)
158 PRK11712 ribonuclease G; Provi 38.2 13 0.00027 39.1 0.6 27 161-187 390-416 (489)
159 KOG3442 Uncharacterized conser 36.5 57 0.0012 27.6 4.0 47 2-48 63-109 (132)
160 PF02814 UreE_N: UreE urease a 36.3 71 0.0015 23.5 4.3 32 273-304 30-61 (65)
161 PRK12380 hydrogenase nickel in 34.4 49 0.0011 27.4 3.4 7 147-153 71-77 (113)
162 PF01155 HypA: Hydrogenase exp 34.4 23 0.00049 29.4 1.4 9 147-155 71-79 (113)
163 TIGR00100 hypA hydrogenase nic 34.3 40 0.00087 28.1 2.9 28 129-156 69-96 (115)
164 COG5552 Uncharacterized conser 34.1 1.2E+02 0.0026 23.3 5.0 31 2-32 7-37 (88)
165 COG1326 Uncharacterized archae 32.8 1.7E+02 0.0038 26.7 6.8 21 206-226 64-86 (201)
166 PF08273 Prim_Zn_Ribbon: Zinc- 32.7 35 0.00076 22.9 1.8 12 130-141 3-14 (40)
167 PF03367 zf-ZPR1: ZPR1 zinc-fi 32.5 72 0.0016 28.3 4.4 34 147-180 2-37 (161)
168 PF08792 A2L_zn_ribbon: A2L zi 32.3 47 0.001 21.3 2.3 10 148-157 5-14 (33)
169 KOG0315 G-protein beta subunit 32.3 30 0.00066 33.0 2.0 32 259-290 18-50 (311)
170 PF13719 zinc_ribbon_5: zinc-r 32.3 25 0.00055 23.0 1.1 10 131-140 3-12 (37)
171 PF07092 DUF1356: Protein of u 32.0 22 0.00049 33.5 1.1 13 131-143 39-51 (238)
172 PRK14873 primosome assembly pr 31.8 51 0.0011 36.1 4.0 60 119-199 368-432 (665)
173 PF13453 zf-TFIIB: Transcripti 31.5 52 0.0011 21.9 2.6 8 174-181 20-27 (41)
174 TIGR00100 hypA hydrogenase nic 31.5 63 0.0014 26.9 3.6 7 147-153 71-77 (115)
175 smart00440 ZnF_C2C2 C2C2 Zinc 31.4 81 0.0018 21.0 3.5 17 148-164 2-18 (40)
176 TIGR01562 FdhE formate dehydro 29.7 62 0.0013 31.9 3.8 9 131-139 185-193 (305)
177 cd02639 R3H_RRM R3H domain of 29.2 68 0.0015 23.5 3.0 22 322-343 17-38 (60)
178 PF01155 HypA: Hydrogenase exp 29.2 27 0.00059 28.9 1.1 41 118-158 57-98 (113)
179 cd05792 S1_eIF1AD_like S1_eIF1 28.2 2.7E+02 0.0059 21.6 6.4 22 269-290 9-31 (78)
180 PF10080 DUF2318: Predicted me 28.0 78 0.0017 25.9 3.5 11 147-157 36-46 (102)
181 smart00276 GLECT Galectin. Gal 27.6 1.6E+02 0.0035 24.6 5.6 22 208-229 2-23 (128)
182 PF01333 Apocytochr_F_C: Apocy 27.1 68 0.0015 26.8 3.0 56 271-329 23-82 (118)
183 PF14354 Lar_restr_allev: Rest 27.0 76 0.0016 22.8 3.0 32 147-181 4-37 (61)
184 PF14353 CpXC: CpXC protein 26.6 34 0.00073 28.8 1.2 14 172-185 37-50 (128)
185 PF04246 RseC_MucC: Positive r 25.4 56 0.0012 27.7 2.4 21 204-224 41-61 (135)
186 PRK00564 hypA hydrogenase nick 24.7 82 0.0018 26.3 3.2 28 129-156 70-98 (117)
187 KOG0005 Ubiquitin-like protein 24.6 29 0.00064 25.4 0.4 21 273-293 2-22 (70)
188 PF03811 Zn_Tnp_IS1: InsA N-te 24.5 50 0.0011 21.6 1.4 10 147-156 6-15 (36)
189 PF07295 DUF1451: Protein of u 24.5 78 0.0017 27.6 3.1 7 147-153 113-119 (146)
190 COG3809 Uncharacterized protei 24.1 45 0.00098 25.9 1.3 7 148-154 3-9 (88)
191 COG1530 CafA Ribonucleases G a 24.1 79 0.0017 33.3 3.6 27 161-187 383-409 (487)
192 COG2190 NagE Phosphotransferas 23.4 1.2E+02 0.0027 26.7 4.1 47 273-326 62-111 (156)
193 PF13248 zf-ribbon_3: zinc-rib 23.0 33 0.00072 20.5 0.3 21 174-196 3-23 (26)
194 PRK05978 hypothetical protein; 22.9 46 0.00099 29.2 1.3 7 147-153 34-40 (148)
195 PF05180 zf-DNL: DNL zinc fing 22.9 49 0.0011 24.8 1.3 14 147-160 5-18 (66)
196 PF07754 DUF1610: Domain of un 22.7 66 0.0014 19.2 1.6 6 174-179 17-22 (24)
197 COG0089 RplW Ribosomal protein 22.2 64 0.0014 26.0 1.9 20 3-22 25-44 (94)
198 PF12387 Peptidase_C74: Pestiv 22.2 53 0.0012 29.4 1.6 23 131-156 163-185 (200)
199 PF02426 MIase: Muconolactone 22.1 1.4E+02 0.0031 23.8 3.9 23 319-341 3-25 (91)
200 cd01388 SOX-TCF_HMG-box SOX-TC 22.0 74 0.0016 23.7 2.2 41 17-58 14-54 (72)
201 PF06975 DUF1299: Protein of u 21.3 29 0.00063 23.4 -0.2 12 41-52 10-21 (47)
202 PF11023 DUF2614: Protein of u 21.2 47 0.001 27.6 1.0 27 172-198 68-94 (114)
203 smart00778 Prim_Zn_Ribbon Zinc 20.8 76 0.0017 20.9 1.7 12 130-141 3-14 (37)
204 PF13717 zinc_ribbon_4: zinc-r 20.5 57 0.0012 21.2 1.1 9 131-139 3-11 (36)
205 TIGR03221 muco_delta muconolac 20.4 1.6E+02 0.0036 23.5 3.9 23 319-341 2-24 (90)
206 PRK13263 ureE urease accessory 20.2 4.5E+02 0.0098 24.3 7.3 46 258-304 22-67 (206)
207 PF02963 EcoRI: Restriction en 20.1 56 0.0012 30.2 1.3 38 273-311 162-199 (257)
No 1
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=9.3e-101 Score=772.68 Aligned_cols=386 Identities=47% Similarity=0.895 Sum_probs=347.6
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhCCccccccccccccccccccCCCCCCCCCCcccc
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAHDPFDIF 81 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~~~~~~~~d~~diF 81 (402)
+||||+++||.+|||||||+||++||||+|+++++|++|++||||||||+||++||+||++++.++. ++.++.|+|
T Consensus 32 ~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~----~~~d~~d~f 107 (421)
T PTZ00037 32 EVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGE----QPADASDLF 107 (421)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCC----CCcchhhhH
Confidence 6899999999999999999999999999999899999999999999999999999999998876421 124577899
Q ss_pred cccccCCCCCCCCCCCccccCCcceeeccccccccccccccceecceeeeecCCccCCCcccCceeeCCCCcCCceEEEE
Q 015690 82 QSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSI 161 (402)
Q Consensus 82 ~~~Fgg~~~gg~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~ 161 (402)
+.|||++ + +..+++++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|.......+|+.|+|+|+++..
T Consensus 108 ~~~Fggg----~--~~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~ 181 (421)
T PTZ00037 108 DLIFGGG----R--KPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQI 181 (421)
T ss_pred HHhhccc----c--ccccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEE
Confidence 9999742 1 112346799999999999999999999999999999999999999877767899999999999999
Q ss_pred EecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEEecCCCcCCCCCCCCccEEEE
Q 015690 162 RHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFV 241 (402)
Q Consensus 162 ~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~geG~~~~g~~~GDliv~ 241 (402)
+++|| |+++++.+|+.|+|+|+++..+++|+.|+|++++.+.++|+|+||+|+.+|++|+|+|+|++.++..+|||||+
T Consensus 182 ~~~g~-~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~~~~pGDLiv~ 260 (421)
T PTZ00037 182 RQMGS-MIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADEKPNEIPGNVVFI 260 (421)
T ss_pred Eeecc-eeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCCCCCCCCCcEEEE
Confidence 99999 88999999999999999998889999999999999999999999999999999999999999888999999999
Q ss_pred EEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceEEecCCCCCCCCCCCCCCcEEE
Q 015690 242 LQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYI 321 (402)
Q Consensus 242 i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~~i~g~Gmp~~~~~~~~GdL~i 321 (402)
|.++||+.|+|+|+||++++.|||+|||+|+++.|+||||+.|.|+||||+|++||++++|+|+|||..++++.+|||||
T Consensus 261 I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V 340 (421)
T PTZ00037 261 LNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYV 340 (421)
T ss_pred EEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEE
Confidence 99999999999999999999999999999999999999999899999999999999999999999998766567999999
Q ss_pred EEEEeCC--CCCCHHHHHHHHhhCCCCCCCCCccCcccccceeeeccCChhHHHHHHhhhhccccccCCCC--CCCCCCC
Q 015690 322 HFTVDFP--ESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRKQQAAQEAYDEDDDM--QGGAQRV 397 (402)
Q Consensus 322 ~~~V~~P--~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 397 (402)
+|+|.|| +.||++|+++|++|||.++.... +++..++|++++++||+++...+ .++++|+||+|+ ++++++|
T Consensus 341 ~~~V~~P~~~~Ls~~qk~ll~~l~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v 416 (421)
T PTZ00037 341 TFEVIFPVDRKFTNEEKEILKSLFPQNPEEKK-DLEDTEIEVVTAQNVDPEEVKDR---DQKQQYQEDEDDEHHQEGERV 416 (421)
T ss_pred EEEEEcCCCCCCCHHHHHHHHHhccCCCCCCC-CCCcccceeEecccCCHHHhhhh---HHHHhhccccccccCCCCCcc
Confidence 9999999 88999999999999997654443 55678899999999999876444 234555544433 3577999
Q ss_pred CCcCC
Q 015690 398 QCAQQ 402 (402)
Q Consensus 398 ~C~~q 402 (402)
|||||
T Consensus 417 ~c~~q 421 (421)
T PTZ00037 417 ACRQQ 421 (421)
T ss_pred ccCCC
Confidence 99998
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-95 Score=705.81 Aligned_cols=334 Identities=39% Similarity=0.714 Sum_probs=302.8
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHhhCCccccccccccccccccc-cCCCC-CCCC
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGG-D---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKE-GMGGG-GGAH 75 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~-~---~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~-g~~~~-~~~~ 75 (402)
+||||+++||++||||||||||+|||||+|+ + ++|||||++||||||||+||++||+||++++++ |++++ ++++
T Consensus 8 eiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~gg~g~~~f 87 (371)
T COG0484 8 EILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGGFGFGGF 87 (371)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcCCCCcCCC
Confidence 6999999999999999999999999999999 4 389999999999999999999999999999873 22221 1112
Q ss_pred --CCcccccccccCCCCCCCCCCCccccCCcceeeccccccccccccccceecceeeeecCCccCCCcccCc-eeeCCCC
Q 015690 76 --DPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMKCSGC 152 (402)
Q Consensus 76 --d~~diF~~~Fgg~~~gg~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~-~~~C~~C 152 (402)
++.|||++||||+++ +++++++++++.|+.+.|+|||+|+|.|+++++.+++.+.|++|+|+|++.++ ..+|++|
T Consensus 88 gg~~~DIF~~~FgGg~~--~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC 165 (371)
T COG0484 88 GGDFGDIFEDFFGGGGG--GRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTC 165 (371)
T ss_pred CCCHHHHHHHhhcCCCc--ccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCC
Confidence 578999999974322 22334557899999999999999999999999999999999999999999985 5899999
Q ss_pred cCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEEecCCCcCCCC-
Q 015690 153 QGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP- 231 (402)
Q Consensus 153 ~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~geG~~~~- 231 (402)
+|+|.+...+++ ++++++++|+.|+|+|.++. ++|++|+|.+++.+.++|+|+||+|+.+|++|++.|+|++.+
T Consensus 166 ~G~G~v~~~~~~---g~~~~~~~C~~C~G~G~~i~--~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~ 240 (371)
T COG0484 166 NGSGQVRTVQRT---GFFSFQQTCPTCNGTGKIIK--DPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPN 240 (371)
T ss_pred CCcCeEEEEEee---eEEEEEEECCCCccceeECC--CCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCCC
Confidence 999999888888 34788999999999999995 999999999999999999999999999999999999999965
Q ss_pred CCCCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceEEecCCCCCCCC
Q 015690 232 DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQ 311 (402)
Q Consensus 232 g~~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~~i~g~Gmp~~~ 311 (402)
++++|||||+|.|++|+.|+|+|+|||++++|++.+|++|+++.|+||||+ +.|+|||| +++|++++|+|+|||..+
T Consensus 241 Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~-~~l~ip~G--tq~G~~~rl~gkG~p~~~ 317 (371)
T COG0484 241 GGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGR-VKLKIPAG--TQTGEVFRLRGKGMPKLR 317 (371)
T ss_pred CCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCC-EEEecCCC--CccCcEEEEcCCCccccC
Confidence 788999999999999999999999999999999999999999999999999 99999999 478999999999999864
Q ss_pred CCCCCCcEEEEEEEeCCCCCCHHHHHHHHhhCCCC
Q 015690 312 RPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPR 346 (402)
Q Consensus 312 ~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~~ 346 (402)
...+|||||+++|++|++|+.+|+++|+++....
T Consensus 318 -~~~~GDl~v~v~v~~P~~ls~~q~~lL~~~~~~~ 351 (371)
T COG0484 318 -SGGRGDLYVRVKVETPKNLSDEQKELLEEFAKSL 351 (371)
T ss_pred -CCCcCCEEEEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4567999999999999999999999999998754
No 3
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.7e-86 Score=661.34 Aligned_cols=333 Identities=29% Similarity=0.536 Sum_probs=297.4
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhhCCcccccccccccccccccc--CCCC-C---
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEG--MGGG-G--- 72 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~---~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g--~~~~-~--- 72 (402)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||||||||+||++||+||++++..+ ++++ +
T Consensus 8 ~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~~~~~~~ 87 (372)
T PRK14296 8 EVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSSNFGDFE 87 (372)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCcCCCccc
Confidence 68999999999999999999999999999975 3899999999999999999999999999877531 1111 0
Q ss_pred ---------CCCCCcccccccccCCCCCCCCCCCccccCCcceeeccccccccccccccceecceeeeecCCccCCCccc
Q 015690 73 ---------GAHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKS 143 (402)
Q Consensus 73 ---------~~~d~~diF~~~Fgg~~~gg~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~ 143 (402)
++.++.|+|++|||++ + ++.+++.++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|...
T Consensus 88 ~~~~~~~~~g~~~f~d~f~~~fggg----~-~~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~ 162 (372)
T PRK14296 88 DLFSNMGSSGFSSFTNIFSDFFGSN----K-SDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAES 162 (372)
T ss_pred cccccccccccccchhhhhhhcCCC----c-cCCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCC
Confidence 1113447888888732 1 1123346789999999999999999999999999999999999999987
Q ss_pred Cc-eeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEEe
Q 015690 144 GA-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKIT 222 (402)
Q Consensus 144 ~~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~ 222 (402)
.. ..+|+.|+|+|+++..+++|| |+++.+.+|+.|+|+|.++. +.|+.|+|++++.+.++++|+||+|+++|++|+
T Consensus 163 ~~~~~~C~~C~G~G~~~~~~~~g~-~~~q~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~ 239 (372)
T PRK14296 163 NSDIHICNNCHGTGEVLVQKNMGF-FQFQQSAKCNVCNGAGKIIK--NKCKNCKGKGKYLERKKIEVNIPKGIRPNQQIK 239 (372)
T ss_pred CCCCccCCCCCCCceEEEEEeccc-eEEEEEecCCCcCCcceeec--ccccCCCCceEEEEEEEEEEEECCCCCCCCEEE
Confidence 65 478999999999999999999 56688999999999999986 889999999999999999999999999999999
Q ss_pred cCCCcCCC-CCCCCccEEEEEEEecCCCcccc-CCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceE
Q 015690 223 FPGEADEA-PDTVTGDIVFVLQQKEHPKFKRK-GDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFK 300 (402)
Q Consensus 223 ~~geG~~~-~g~~~GDliv~i~v~~h~~f~R~-g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~ 300 (402)
|+|+|++. ++..+|||||+|+++||+.|+|+ |+||+++++|||+|||+|+++.|+||||+ +.|+||++ ++||+++
T Consensus 240 ~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~-~~v~ip~~--t~~g~~~ 316 (372)
T PRK14296 240 LSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGD-IKYKLPKS--INSNELI 316 (372)
T ss_pred EeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCC-EEEEECCc--cCCCcEE
Confidence 99999985 57789999999999999999996 89999999999999999999999999998 89999987 7999999
Q ss_pred EecCCCCCCCCCCCCCCcEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015690 301 AINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 345 (402)
Q Consensus 301 ~i~g~Gmp~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 345 (402)
+|+|+|||...+++.+|||||+|+|.||+.|+++|+++|++|+..
T Consensus 317 ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~l~~~ 361 (372)
T PRK14296 317 IINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIEQIYEQ 361 (372)
T ss_pred EEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 999999997655567899999999999999999999999999964
No 4
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-87 Score=644.44 Aligned_cols=329 Identities=58% Similarity=1.015 Sum_probs=308.2
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhhCCccccccccccccccccccCCCCCCCCCCccc
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP-EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAHDPFDI 80 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~~-~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~~~~~~~~d~~di 80 (402)
+||||+++||++||||||||||+||||||||++ +||++|++||||||||+||++||+||++++++|+++++. +.
T Consensus 8 ~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g~-~~---- 82 (337)
T KOG0712|consen 8 DILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGGF-GG---- 82 (337)
T ss_pred eeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCCC-cc----
Confidence 699999999999999999999999999999986 999999999999999999999999999999765433322 12
Q ss_pred ccccccCCCCCCCCCCCccccCCcceeeccccccccccccccceecceeeeecCCccCCCcccCceeeCCCCcCCceEEE
Q 015690 81 FQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVS 160 (402)
Q Consensus 81 F~~~Fgg~~~gg~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~ 160 (402)
|++||+.+ +.+ .+++.|++|++|.++|||+|+|.|+++++.++++.+|+.|+|+|..+.+..+|+.|.|+|+.+.
T Consensus 83 f~~~F~~g---~~~--~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~ 157 (337)
T KOG0712|consen 83 FSQFFGFG---GNG--GRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTR 157 (337)
T ss_pred HHHhccCC---CcC--ccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeE
Confidence 88888732 211 2233449999999999999999999999999999999999999999998889999999999999
Q ss_pred EEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEEecCCCcCCCCCCCCccEEE
Q 015690 161 IRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVF 240 (402)
Q Consensus 161 ~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~geG~~~~g~~~GDliv 240 (402)
++++||||+++++..|..|+|+|.++..+++|+.|.|.+++.+.+.++|+|++|++++++|++.|++++.++..+||+++
T Consensus 158 ~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~g~~pgD~vl 237 (337)
T KOG0712|consen 158 TRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAPGTKPGDVVL 237 (337)
T ss_pred EEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeecCCCcCccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceEEecCCCCCCCCCCCCCCcEE
Q 015690 241 VLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLY 320 (402)
Q Consensus 241 ~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~~i~g~Gmp~~~~~~~~GdL~ 320 (402)
.|..++|+.|.|+|+||++..+|+|.|||||+.+.+.||||+.|.+.++||+||+||++++|+|+|||+++++ +||||
T Consensus 238 ~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~--~g~ly 315 (337)
T KOG0712|consen 238 LIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIFRNP--KGDLY 315 (337)
T ss_pred EecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcccccCC--CCcEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999877 99999
Q ss_pred EEEEEeCCCCCCHHHHHHHHhhC
Q 015690 321 IHFTVDFPESLSPDQCKMLETVL 343 (402)
Q Consensus 321 i~~~V~~P~~l~~~~~~~l~~~l 343 (402)
|+|+|+||+ ++++++..|+.+|
T Consensus 316 i~~~v~fp~-~~~~~~~~l~~~l 337 (337)
T KOG0712|consen 316 IKFEVKFPK-LSPSQLKMLEDLL 337 (337)
T ss_pred EEEEEEcCC-CChHHHHHHHhhC
Confidence 999999999 9999999999886
No 5
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.1e-85 Score=651.40 Aligned_cols=331 Identities=29% Similarity=0.563 Sum_probs=290.1
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhhCCccccccccccccccccccCCCCCCCCCC
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAHDP 77 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~----~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~~~~~~~~d~ 77 (402)
+||||+++||.+||||||||||++||||+|++ +++|++|++||||||||+||++||+||++++..+.+++.++.++
T Consensus 7 ~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~~~~~~~~~ 86 (369)
T PRK14288 7 EILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGASQSDFSDF 86 (369)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCCCccccccc
Confidence 69999999999999999999999999999983 38999999999999999999999999998776321111112233
Q ss_pred c----ccccccccCCCCCCCCCCCccccCCcceeeccccccccccccccceecceeeeecCCccCCCcccCceeeCCCCc
Q 015690 78 F----DIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQ 153 (402)
Q Consensus 78 ~----diF~~~Fgg~~~gg~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~~~C~~C~ 153 (402)
| ++|++|||++ +.+++..+++++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|.......+|+.|+
T Consensus 87 f~~~~~~F~~~fg~g---~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~ 163 (369)
T PRK14288 87 FEDLGSFFEDAFGFG---ARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCN 163 (369)
T ss_pred hhhHHHHHHhhcCCC---CcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCCCC
Confidence 3 3555556521 11111223467899999999999999999999999999999999999999887678999999
Q ss_pred CCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEEecCCCcCCCCCC
Q 015690 154 GSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDT 233 (402)
Q Consensus 154 G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~geG~~~~g~ 233 (402)
|+|+++..+ |++ +++++|+.|.|+|.++. +.|+.|+|.+++.+.++++|+||||+++|++|+|+|+|++.++.
T Consensus 164 G~G~~~~~~----g~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~~~~~~ 236 (369)
T PRK14288 164 GQGQVFMRQ----GFM-SFAQTCGACQGKGKIIK--TPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYEKG 236 (369)
T ss_pred CCcEEEEEe----ceE-EEEEecCCCCCCceEcc--ccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCccCCCCC
Confidence 999876543 354 56779999999999986 88999999999999999999999999999999999999998888
Q ss_pred CCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceEEecCCCCCCCCCC
Q 015690 234 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRP 313 (402)
Q Consensus 234 ~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~~i~g~Gmp~~~~~ 313 (402)
.+|||||+|++++|+.|+|+|+||+++++|||+|||+|+++.|+||||+.+.|+||++ ++||++++|+|+|||..+ +
T Consensus 237 ~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~--~~~g~~~~i~g~G~p~~~-~ 313 (369)
T PRK14288 237 KRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRN--ARDRQTFAFRNEGVKHPE-S 313 (369)
T ss_pred CCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCC--CCCCcEEEEcCCCCCCCC-C
Confidence 8999999999999999999999999999999999999999999999999889999997 799999999999999764 3
Q ss_pred CCCCcEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015690 314 FMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 345 (402)
Q Consensus 314 ~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 345 (402)
..+|||||+|+|.||++|+++|+++|+++++.
T Consensus 314 ~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~ 345 (369)
T PRK14288 314 SYRGSLIVELQVIYPKSLNKEQQELLEKLHAS 345 (369)
T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45899999999999999999999999999974
No 6
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.1e-83 Score=638.81 Aligned_cols=333 Identities=33% Similarity=0.604 Sum_probs=297.4
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhhCCccccccccccccccccccCCC-----CCC
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-----GGG 73 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~---~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~~~-----~~~ 73 (402)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||+||++||+||++++++++++ +++
T Consensus 9 ~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~~~~~~ 88 (377)
T PRK14298 9 EILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDIFRGAD 88 (377)
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCcccccccCC
Confidence 69999999999999999999999999999975 3899999999999999999999999999887643211 111
Q ss_pred CCCCcccccccccCCCCCCCCCCCccccCCcceeeccccccccccccccceecceeeeecCCccCCCcccCce-eeCCCC
Q 015690 74 AHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGC 152 (402)
Q Consensus 74 ~~d~~diF~~~Fgg~~~gg~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~-~~C~~C 152 (402)
+.++.|+|++|||+++ +++.++++++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|...+.. .+|+.|
T Consensus 89 ~~~~~d~f~~~Fgg~~----~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C 164 (377)
T PRK14298 89 FGGFGDIFEMFFGGGG----RRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTC 164 (377)
T ss_pred cCcchhhhHhhhcCCC----ccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCC
Confidence 2345689999997421 11123356899999999999999999999999999999999999999987764 789999
Q ss_pred cCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEEecCCCcCCC-C
Q 015690 153 QGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA-P 231 (402)
Q Consensus 153 ~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~geG~~~-~ 231 (402)
+|+|+++..+++++ ++++++.+|+.|+|+|.++. +.|+.|+|++++.+.++++|+||||+++|++|+|+|+|++. +
T Consensus 165 ~G~G~~~~~~~~~~-g~~~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~ 241 (377)
T PRK14298 165 GGTGQVTTTRSTPL-GQFVTTTTCSTCHGRGQVIE--SPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEAGSP 241 (377)
T ss_pred CCccEEEEEEecCc-eeEEEEEeCCCCCCCCcccC--CCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEecccCCCCC
Confidence 99999998888644 55689999999999999986 88999999999999999999999999999999999999984 5
Q ss_pred CCCCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceEEecCCCCCCCC
Q 015690 232 DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQ 311 (402)
Q Consensus 232 g~~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~~i~g~Gmp~~~ 311 (402)
+..+|||||+|+++||+.|+|+|+||++++.|||+|||+|+++.|+||||+ +.|+||++ +++|++++|+|+|||..+
T Consensus 242 ~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-i~v~ip~g--~~~g~~lri~g~G~p~~~ 318 (377)
T PRK14298 242 GAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGK-VKMNIPPG--TQTHSVFRLKDKGMPRLH 318 (377)
T ss_pred CCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCC-EEEEeCCC--cccCCEEEECCCCCCCCC
Confidence 788999999999999999999999999999999999999999999999998 78999998 799999999999999764
Q ss_pred CCCCCCcEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015690 312 RPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 345 (402)
Q Consensus 312 ~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 345 (402)
...+|||||+|+|.||+.|+++++++|++++..
T Consensus 319 -~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l~~~ 351 (377)
T PRK14298 319 -GHGKGDQLVKVIVKTPTKLTQEQKELLREFDEL 351 (377)
T ss_pred -CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 346899999999999999999999999999864
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.2e-83 Score=637.58 Aligned_cols=334 Identities=33% Similarity=0.661 Sum_probs=293.0
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhhCCccccccccccccccccccCCC-C-CC--
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-G-GG-- 73 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~----~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~~~-~-~~-- 73 (402)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||||||||+||++||+||+++++.+.++ + ++
T Consensus 8 ~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~~~~~ 87 (372)
T PRK14286 8 DILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFGQGAYT 87 (372)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCCCCCcc
Confidence 69999999999999999999999999999973 3899999999999999999999999999887632111 1 11
Q ss_pred -----CCCCcccccccccCCCCCC-CCCCCccccCCcceeeccccccccccccccceecceeeeecCCccCCCcccCce-
Q 015690 74 -----AHDPFDIFQSFFGGSPFGG-GSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS- 146 (402)
Q Consensus 74 -----~~d~~diF~~~Fgg~~~gg-~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~- 146 (402)
+.++.|+|++|||+++.++ .+.+..++.++.|+.+.|.|||+|+|+|+++++.+++.+.|++|+|+|......
T Consensus 88 ~~~~~~~~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~ 167 (372)
T PRK14286 88 DFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSP 167 (372)
T ss_pred cccccccchhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCC
Confidence 1244589999998532111 011122346799999999999999999999999999999999999999987654
Q ss_pred eeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEEecCCC
Q 015690 147 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGE 226 (402)
Q Consensus 147 ~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~ge 226 (402)
.+|+.|+|+|+++..+ |++ +++++|+.|+|+|.++. ++|+.|+|++++++.++++|+||+|+++|++|+|+|+
T Consensus 168 ~~C~~C~G~G~v~~~~----G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~ 240 (372)
T PRK14286 168 TTCPDCGGSGQIRRTQ----GFF-SVATTCPTCRGKGTVIS--NPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVSGE 240 (372)
T ss_pred ccCCCCcCeEEEEEEe----ceE-EEEEeCCCCCceeeEec--ccCCCCCCCcEEecceEEEEEECCCCCCCCEEEECCc
Confidence 7899999999876653 465 47889999999999986 8899999999999999999999999999999999999
Q ss_pred cCCCC-CCCCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceEEecCC
Q 015690 227 ADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDE 305 (402)
Q Consensus 227 G~~~~-g~~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~~i~g~ 305 (402)
|++.+ +..+|||||+|++++|+.|+|+|+||++++.|||+|||+|+++.|+||||++|.|+||++ +++|++++|+|+
T Consensus 241 G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g--~~~g~~~ri~G~ 318 (372)
T PRK14286 241 GEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEG--TESGQVFRLKGH 318 (372)
T ss_pred cccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCc--cCCCcEEEECCC
Confidence 99865 457799999999999999999999999999999999999999999999999899999998 799999999999
Q ss_pred CCCCCCCCCCCCcEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015690 306 GMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 345 (402)
Q Consensus 306 Gmp~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 345 (402)
|||..+ ...+|||||+|+|.||+.|+++|+++|++++..
T Consensus 319 G~P~~~-~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~ 357 (372)
T PRK14286 319 GMPYLG-AYGKGDQHVIVKIEIPKKITRRQRELIEEFARE 357 (372)
T ss_pred CCCCCC-CCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 999764 346899999999999999999999999999964
No 8
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.2e-83 Score=636.52 Aligned_cols=334 Identities=30% Similarity=0.581 Sum_probs=298.3
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhhCCccccccccccccccccccCCC-C-CCCCC
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-G-GGAHD 76 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~---~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~~~-~-~~~~d 76 (402)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||||||||+||++||+||++++.+++++ + +++.+
T Consensus 8 ~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~~~~f~~ 87 (371)
T PRK14287 8 EVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGGAGDFGG 87 (371)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCCCccccc
Confidence 68999999999999999999999999999975 3799999999999999999999999999887643211 1 11223
Q ss_pred CcccccccccCCCCCCCCCCCccccCCcceeeccccccccccccccceecceeeeecCCccCCCcccCc-eeeCCCCcCC
Q 015690 77 PFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMKCSGCQGS 155 (402)
Q Consensus 77 ~~diF~~~Fgg~~~gg~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~-~~~C~~C~G~ 155 (402)
+.|+|++|||+++ +.+.++++.++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|..... ..+|+.|+|+
T Consensus 88 ~~d~f~~~fgg~~---~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~ 164 (371)
T PRK14287 88 FSDIFDMFFGGGG---GRRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGS 164 (371)
T ss_pred hHHHHHhhhcccc---CCCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCE
Confidence 5589999997421 11112234579999999999999999999999999999999999999998765 4789999999
Q ss_pred ceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEEecCCCcCCC-CCCC
Q 015690 156 GMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA-PDTV 234 (402)
Q Consensus 156 G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~geG~~~-~g~~ 234 (402)
|+++..++++|||+++ +.+|+.|.|+|.++. +.|+.|+|++++.+.++++|.||+|+++|++|+|+|+|++. .+..
T Consensus 165 G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~ 241 (371)
T PRK14287 165 GQLNVEQNTPFGRVVN-RRVCHHCEGTGKIIK--QKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAGVNGGP 241 (371)
T ss_pred EEEEEEEecCCceEEE-EEeCCCCCCCCcccc--ccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcCCCCCCC
Confidence 9999999999999875 779999999999986 88999999999999999999999999999999999999985 4568
Q ss_pred CccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceEEecCCCCCCCCCCC
Q 015690 235 TGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPF 314 (402)
Q Consensus 235 ~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~~i~g~Gmp~~~~~~ 314 (402)
+|||||+|++++|+.|+|+|+||++++.|||+|||+|+++.|+||||+ +.|+|||| +++|++++|+|+|||..++ .
T Consensus 242 ~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g--~~~g~~~ri~g~G~p~~~~-~ 317 (371)
T PRK14287 242 PGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGK-VKLKIPAG--TQTGTSFRLRGKGVPNVHG-R 317 (371)
T ss_pred CccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCC-EEEEECCC--ccCCcEEEEcCCCccCCCC-C
Confidence 899999999999999999999999999999999999999999999998 79999998 7999999999999997643 3
Q ss_pred CCCcEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015690 315 MRGKLYIHFTVDFPESLSPDQCKMLETVLPP 345 (402)
Q Consensus 315 ~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 345 (402)
.+|||||+|+|.||+.|+.+|+++|++++..
T Consensus 318 ~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~ 348 (371)
T PRK14287 318 GQGDQHVQVRVVTPKNLTEKEKELMREFAGM 348 (371)
T ss_pred CCCCEEEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 5899999999999999999999999999953
No 9
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9.4e-83 Score=637.52 Aligned_cols=334 Identities=32% Similarity=0.621 Sum_probs=298.1
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhhCCccccccccccccccccccCCCCC----C-
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGG----G- 73 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~---~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~~~~~----~- 73 (402)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||.||++||+||++++.+++++++ +
T Consensus 8 ~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~~~~~~ 87 (376)
T PRK14280 8 EVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGFGGGDF 87 (376)
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCCCCCCc
Confidence 69999999999999999999999999999975 389999999999999999999999999988764321110 1
Q ss_pred --CCCCcccccccccCCCCCCCCCCCccccCCcceeeccccccccccccccceecceeeeecCCccCCCcccCc-eeeCC
Q 015690 74 --AHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMKCS 150 (402)
Q Consensus 74 --~~d~~diF~~~Fgg~~~gg~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~-~~~C~ 150 (402)
++++.|+|++|||+++ .++....++++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|..... ..+|+
T Consensus 88 ~~~~~~~d~f~~~fgg~~---~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~ 164 (376)
T PRK14280 88 GGGFGFEDIFSSFFGGGG---RRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCS 164 (376)
T ss_pred cccccchhhHHHHhCCcc---ccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccCC
Confidence 1245689999997421 11112234679999999999999999999999999999999999999998765 47899
Q ss_pred CCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEEecCCCcCCC
Q 015690 151 GCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA 230 (402)
Q Consensus 151 ~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~geG~~~ 230 (402)
.|+|+|+++..++++||+++ ++.+|+.|+|+|.++. +.|+.|+|++++.+.++++|.||+|+++|++|+|+|+|++.
T Consensus 165 ~C~G~G~~~~~~~~~~g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~ 241 (376)
T PRK14280 165 HCGGSGQVSVEQNTPFGRVV-NRQTCPHCNGTGQEIK--EKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGEPG 241 (376)
T ss_pred CCCCEEEEEEEeecCCceEE-EEEEcCCCCCCCceec--CCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcccccCC
Confidence 99999999999999999986 5789999999999986 88999999999999999999999999999999999999985
Q ss_pred C-CCCCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceEEecCCCCCC
Q 015690 231 P-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPM 309 (402)
Q Consensus 231 ~-g~~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~~i~g~Gmp~ 309 (402)
+ +..+|||||+|++++|+.|+|+|+||++++.|||+|||+|+++.|+||||+ +.|+||++ +++|++++|+|+|||.
T Consensus 242 ~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ip~g--~~~g~~~~i~g~G~p~ 318 (376)
T PRK14280 242 VNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGK-VKLKIPAG--TQTGTQFRLKGKGVPN 318 (376)
T ss_pred CCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCce-EEEEECCC--CCCCcEEEEcCCCCCC
Confidence 4 567899999999999999999999999999999999999999999999997 78999998 7999999999999997
Q ss_pred CCCCCCCCcEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015690 310 YQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 345 (402)
Q Consensus 310 ~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 345 (402)
.. ...+|||||+|+|.||+.||++|+++|++++..
T Consensus 319 ~~-~~~~GDL~v~~~v~~P~~Ls~~q~~~l~~l~~~ 353 (376)
T PRK14280 319 VR-GYGQGDQYVVVRVVTPTKLTDRQKELLREFAEL 353 (376)
T ss_pred CC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 64 346899999999999999999999999999853
No 10
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.1e-83 Score=638.82 Aligned_cols=334 Identities=31% Similarity=0.571 Sum_probs=298.6
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhhCCccccccccccccccccccCCC---C-C--
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG---G-G-- 72 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~---~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~~~---~-~-- 72 (402)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||||||||+||++||+||++++++++++ + +
T Consensus 8 ~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~~~~~~ 87 (380)
T PRK14276 8 DRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAGGFGGF 87 (380)
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCCCCCCc
Confidence 69999999999999999999999999999975 3899999999999999999999999999887643211 1 0
Q ss_pred ----CCCCCcccccccccCCCCCCCCCCCccccCCcceeeccccccccccccccceecceeeeecCCccCCCcccCc-ee
Q 015690 73 ----GAHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SM 147 (402)
Q Consensus 73 ----~~~d~~diF~~~Fgg~~~gg~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~-~~ 147 (402)
++.++.|+|++|||+++ +.+.+..++++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|..... ..
T Consensus 88 ~~~~~~~~~~d~f~~~fgg~~---~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~ 164 (380)
T PRK14276 88 DGSGGFGGFEDIFSSFFGGGG---ARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPV 164 (380)
T ss_pred cccccccchhhHHHHHhCccc---cccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCCc
Confidence 11245589999997421 11112334678999999999999999999999999999999999999998765 47
Q ss_pred eCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEEecCCCc
Q 015690 148 KCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEA 227 (402)
Q Consensus 148 ~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~geG 227 (402)
+|+.|+|+|+++..++++|||+++ +.+|+.|+|+|.++. +.|+.|+|++++.+.++++|+||+|+++|++|+|+|+|
T Consensus 165 ~C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G 241 (380)
T PRK14276 165 TCGKCHGSGVITVDTQTPLGMMRR-QVTCDVCHGTGKEIK--EPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQGQG 241 (380)
T ss_pred cCCCCCCeeEEEEEEecCCceEEE-EEECCCCCCCCcccc--CCCCCCCCceEEEEEEEEEEEeCCCccCCcEEEEeccc
Confidence 899999999999999999999876 779999999999986 88999999999999999999999999999999999999
Q ss_pred CCCC-CCCCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceEEecCCC
Q 015690 228 DEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEG 306 (402)
Q Consensus 228 ~~~~-g~~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~~i~g~G 306 (402)
++.+ +..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+ +.|+||++ +++|++++|+|+|
T Consensus 242 ~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~-i~v~ip~g--~~~g~~~~i~g~G 318 (380)
T PRK14276 242 EAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGD-VELKIPAG--TQTGKKFRLRGKG 318 (380)
T ss_pred cCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCc-EEEEECCC--CCCCCEEEECCCC
Confidence 9864 567899999999999999999999999999999999999999999999998 78999998 7999999999999
Q ss_pred CCCCCCCCCCCcEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015690 307 MPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 345 (402)
Q Consensus 307 mp~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 345 (402)
||..+ ...+|||||+|+|.||+.|+++|+++|++++..
T Consensus 319 ~p~~~-~~~~GDL~V~~~v~~P~~l~~~q~~~l~~~~~~ 356 (380)
T PRK14276 319 APKLR-GGGNGDQHVTVNIVTPTKLNDAQKEALKAFAKA 356 (380)
T ss_pred cCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 99764 345799999999999999999999999999953
No 11
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.8e-82 Score=635.53 Aligned_cols=336 Identities=31% Similarity=0.596 Sum_probs=296.8
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHhhCCccccccccccccccccccC-CCC-C-CCC
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGM-GGG-G-GAH 75 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~~---~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~-~~~-~-~~~ 75 (402)
+||||+++||.+|||+|||+||++||||+|+++ ++|++|++||||||||+||++||+||+++..++. +++ + ++.
T Consensus 7 ~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~~~~f~ 86 (378)
T PRK14278 7 GLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGFGGGFG 86 (378)
T ss_pred eecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCCCcCcC
Confidence 799999999999999999999999999999863 7999999999999999999999999986433211 111 1 122
Q ss_pred CCcccccccccCCCCCCCCCCCccccCCcceeeccccccccccccccceecceeeeecCCccCCCcccCc-eeeCCCCcC
Q 015690 76 DPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMKCSGCQG 154 (402)
Q Consensus 76 d~~diF~~~Fgg~~~gg~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~-~~~C~~C~G 154 (402)
++.|+|++|||+++ ++......++++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|..... ..+|+.|+|
T Consensus 87 ~~~d~f~~ffgg~g--~~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G 164 (378)
T PRK14278 87 GLGDVFEAFFGGGA--ASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGG 164 (378)
T ss_pred chhHHHHHHhCCCC--CCCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccC
Confidence 35589999997421 111111234679999999999999999999999999999999999999998765 478999999
Q ss_pred CceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEEecCCCcCCCC-CC
Q 015690 155 SGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DT 233 (402)
Q Consensus 155 ~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~geG~~~~-g~ 233 (402)
+|+++..++.++|++++ +++|+.|+|+|.++. ++|+.|+|++++.+.++++|+||||+++|++|+|+|+|++.+ +.
T Consensus 165 ~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~ 241 (378)
T PRK14278 165 RGEVQTVQRSFLGQVMT-SRPCPTCRGVGEVIP--DPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVGPGGG 241 (378)
T ss_pred ceEEEEEEeccceeEEE-EEECCCCCccceeeC--CCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCCCCCCC
Confidence 99999999888988764 669999999999986 889999999999999999999999999999999999999966 46
Q ss_pred CCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceEEecCCCCCCCCCC
Q 015690 234 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRP 313 (402)
Q Consensus 234 ~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~~i~g~Gmp~~~~~ 313 (402)
.+|||||+|+++||+.|+|+|+||++++.|||++||+|+++.|+|||++.|.|+||++ +++|++++|+|+|||..+ .
T Consensus 242 ~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g--~~~g~~lrl~g~G~p~~~-~ 318 (378)
T PRK14278 242 PAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPG--TQPGSVITLRGRGMPHLR-S 318 (378)
T ss_pred CCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCC--cCCCcEEEECCCCCCCCC-C
Confidence 7899999999999999999999999999999999999999999999777899999998 799999999999999764 3
Q ss_pred CCCCcEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015690 314 FMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 345 (402)
Q Consensus 314 ~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 345 (402)
..+|||||+|+|.||++||++|+++|+++++.
T Consensus 319 ~~~GDL~V~~~V~~P~~Ls~~qk~~l~~~~~~ 350 (378)
T PRK14278 319 GGRGDLHAHVEVVVPTRLDHEDIELLRELKAL 350 (378)
T ss_pred CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 46899999999999999999999999999964
No 12
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.4e-82 Score=636.60 Aligned_cols=336 Identities=32% Similarity=0.617 Sum_probs=296.0
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhhCCcccccccccccccccccc-CC------C
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEG-MG------G 70 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~----~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g-~~------~ 70 (402)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||||||||+||+.||+||+++++.+ ++ +
T Consensus 9 ~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~~~~~ 88 (386)
T PRK14277 9 EILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQGGFGQG 88 (386)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccccCCcCCC
Confidence 69999999999999999999999999999984 3799999999999999999999999999877531 10 0
Q ss_pred CC--CC-----CCCcccccccccCCCCCCCC-CCCccccCCcceeeccccccccccccccceecceeeeecCCccCCCcc
Q 015690 71 GG--GA-----HDPFDIFQSFFGGSPFGGGS-SRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSK 142 (402)
Q Consensus 71 ~~--~~-----~d~~diF~~~Fgg~~~gg~~-~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~ 142 (402)
+. ++ .++.|+|++||++ .|++++ ++..++.++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|..
T Consensus 89 g~~~~~~~~~~~~~~d~f~~~F~~-~fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~ 167 (386)
T PRK14277 89 GFGGGGFDFDFGGFGDIFEDIFGD-FFGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAK 167 (386)
T ss_pred CccccCccccccchhHHHHHhhcc-cccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcC
Confidence 10 00 1233678888863 222221 112234678999999999999999999999999999999999999998
Q ss_pred cCc-eeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEE
Q 015690 143 SGA-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKI 221 (402)
Q Consensus 143 ~~~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i 221 (402)
... ..+|+.|+|+|+++..++++||++++. .+|+.|+|+|.++. +.|+.|+|++++.+.+.++|.||+|+++|++|
T Consensus 168 ~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~-~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i 244 (386)
T PRK14277 168 PGSKPVTCPVCHGTGQVRTRQNTPFGRIVNI-RTCDRCHGEGKIIT--DPCNKCGGTGRIRRRRKIKVNIPAGIDDGQMI 244 (386)
T ss_pred CCCCCccCCCCCCEEEEEEEEeccCceEEEE-EECCCCCcceeecc--CCCCCCCCCcEEeeeeEEEEecCCCccCCcEE
Confidence 765 478999999999999999999998765 69999999999986 88999999999999999999999999999999
Q ss_pred ecCCCcCCC-CCCCCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceE
Q 015690 222 TFPGEADEA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFK 300 (402)
Q Consensus 222 ~~~geG~~~-~g~~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~ 300 (402)
+|+|+|++. .+..+|||||+|++++|+.|+|+|+||++++.|||+|||+|+++.|+||||+ +.|+||++ +++|+++
T Consensus 245 ~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g--~~~g~~~ 321 (386)
T PRK14277 245 TLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGK-VKFTIPEG--TQTGTKF 321 (386)
T ss_pred EEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCC-EEEEECCC--CCCCCEE
Confidence 999999984 4567899999999999999999999999999999999999999999999998 79999998 6899999
Q ss_pred EecCCCCCCCCCCCCCCcEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015690 301 AINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 345 (402)
Q Consensus 301 ~i~g~Gmp~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 345 (402)
+|+|+|||..++ ..+|||||+|+|.||+.|+++|+++|++|+..
T Consensus 322 ri~g~G~p~~~~-~~~GDL~v~~~V~~P~~Ls~~qk~~l~~l~~~ 365 (386)
T PRK14277 322 RLRGKGIPHLRG-RGRGDQIVKVYIEVPKKLTEKQKELLREFEKL 365 (386)
T ss_pred EECCCCCCCCCC-CCCCCEEEEEEEEeCCCCCHHHHHHHHHHHhh
Confidence 999999997643 36899999999999999999999999999953
No 13
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.1e-82 Score=631.96 Aligned_cols=337 Identities=33% Similarity=0.636 Sum_probs=298.5
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhhCCccccccccccccccccccCC---CCCCC
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG---GGGGA 74 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~----~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~~---~~~~~ 74 (402)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||+||++||+||+++++++.+ ++.++
T Consensus 8 ~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~~~~~~ 87 (380)
T PRK14297 8 EVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGSGGFGG 87 (380)
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCCCCCCC
Confidence 69999999999999999999999999999974 389999999999999999999999999988763211 11111
Q ss_pred ------CCCcccccccccCCCCCCCCCCCccccCCcceeeccccccccccccccceecceeeeecCCccCCCcccCc-ee
Q 015690 75 ------HDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SM 147 (402)
Q Consensus 75 ------~d~~diF~~~Fgg~~~gg~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~-~~ 147 (402)
.++.|||++|||++ +++.+++...++++.|+++.|.|||+|+|+|+++++.+.+.+.|+.|+|+|...+. ..
T Consensus 88 ~~~~~~~~~~d~f~~~fgg~-~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~ 166 (380)
T PRK14297 88 FDFSDMGGFGDIFDSFFGGG-FGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPK 166 (380)
T ss_pred cCcccccchhHHHHHHhccC-ccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcCc
Confidence 13458999999742 22211122334678999999999999999999999999999999999999998765 47
Q ss_pred eCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEEecCCCc
Q 015690 148 KCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEA 227 (402)
Q Consensus 148 ~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~geG 227 (402)
+|+.|+|+|+++..++++||+++ ++.+|+.|+|+|.++. +.|+.|+|++++.+.++++|+||+|+++|++|+|+|+|
T Consensus 167 ~C~~C~G~G~~~~~~~~~~G~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~l~g~G 243 (380)
T PRK14297 167 TCDKCGGTGQIRVQRNTPLGSFV-STTTCDKCGGSGKVIE--DPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRGQG 243 (380)
T ss_pred cCCCccCeEEEEEEEEcCCceeE-EEEeCCCCCCCceEcC--CCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEEEecCc
Confidence 89999999999999999999765 5889999999999986 89999999999999999999999999999999999999
Q ss_pred CCCC-CCCCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceEEecCCC
Q 015690 228 DEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEG 306 (402)
Q Consensus 228 ~~~~-g~~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~~i~g~G 306 (402)
++.+ +..+|||||+|++++|+.|+|+|+||++++.|||+|||+|+++.|+||||+ +.|+||++ +++|++++|+|+|
T Consensus 244 ~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-~~v~ip~g--~~~g~~~ri~g~G 320 (380)
T PRK14297 244 EHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGE-VKYEVPAG--TQPGTVFRLKGKG 320 (380)
T ss_pred cCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCc-EEEEECCC--cCCCCEEEEcCCC
Confidence 9854 567899999999999999999999999999999999999999999999997 78999998 7999999999999
Q ss_pred CCCCCCCCCCCcEEEEEEEeCCCCCCHHHHHHHHhhCCCC
Q 015690 307 MPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPR 346 (402)
Q Consensus 307 mp~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~~ 346 (402)
||..+ ...+|||||+|+|.||+.|+++|+++|+++|+..
T Consensus 321 ~p~~~-~~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~~ 359 (380)
T PRK14297 321 VPRVN-STGRGNQYVTVIVDIPKKLNSKQKEALTMFMEAS 359 (380)
T ss_pred cCCCC-CCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 99763 3468999999999999999999999999999753
No 14
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.7e-81 Score=624.98 Aligned_cols=336 Identities=29% Similarity=0.577 Sum_probs=296.2
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHhhCCccccccccccccccccccC---CCCCC
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD-----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGM---GGGGG 73 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~-----~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~---~~~~~ 73 (402)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||||||||+||++||+||++++..+. +++++
T Consensus 8 ~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~~~~g~ 87 (369)
T PRK14282 8 EILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQETESGGG 87 (369)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccCCCCCc
Confidence 69999999999999999999999999999973 37999999999999999999999999987764211 11111
Q ss_pred C-C-------CC--cccccccccCCCCCCCCCCCccccCCcceeeccccccccccccccceecceeeeecCCccCCCccc
Q 015690 74 A-H-------DP--FDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKS 143 (402)
Q Consensus 74 ~-~-------d~--~diF~~~Fgg~~~gg~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~ 143 (402)
+ . ++ .|+|++|||+++ ++.++..+++++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|...
T Consensus 88 ~~~~~~~~~~~~~~~d~f~~~fgg~~--~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~~ 165 (369)
T PRK14282 88 FFEDIFKDFENIFNRDIFDIFFGERR--TQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEP 165 (369)
T ss_pred ccccccccccccccchhhhHhhcccC--CcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCCCC
Confidence 1 1 11 277888887421 1111123346799999999999999999999999999999999999999987
Q ss_pred Cc-eeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEEe
Q 015690 144 GA-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKIT 222 (402)
Q Consensus 144 ~~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~ 222 (402)
.. ..+|+.|+|+|+++..++++|||+++ +.+|+.|+|+|.++. +.|+.|+|++++.+.++++|+||||+.+|++|+
T Consensus 166 ~~~~~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~ 242 (369)
T PRK14282 166 GSGYVTCPKCHGTGRIREERRSFFGVFVS-ERTCERCGGTGKIPG--EYCHECGGSGRIRRRVRTTVKIPAGVEDGTVLR 242 (369)
T ss_pred CCCCcCCCCCCCcCEEEEEEEccCcceEE-EEECCCCCCcceeCC--CCCCCCCCceeEEEEEEEEEEeCCCCCCCCEEE
Confidence 65 47899999999999999999999765 779999999999975 889999999999999999999999999999999
Q ss_pred cCCCcCCC-CCCCCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceEE
Q 015690 223 FPGEADEA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKA 301 (402)
Q Consensus 223 ~~geG~~~-~g~~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~~ 301 (402)
|+|+|++. ++..+|||||+|+++||+.|+|+|+||++++.|||.|||+|+++.|+||||+.|.|+|||| +++|++++
T Consensus 243 ~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g--~~~g~~ir 320 (369)
T PRK14282 243 ITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPG--TQPETVFR 320 (369)
T ss_pred EecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCC--cCCCCEEE
Confidence 99999984 4678899999999999999999999999999999999999999999999999899999998 79999999
Q ss_pred ecCCCCCCCCCCCCCCcEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015690 302 INDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 345 (402)
Q Consensus 302 i~g~Gmp~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 345 (402)
|+|+|||..+ ...+|||||+|+|.+|+.|+.+++++|++++..
T Consensus 321 i~GkG~p~~~-~~~~GDL~V~~~v~~P~~l~~~~~~ll~~l~~~ 363 (369)
T PRK14282 321 LKGKGLPNMR-YGRRGDLIVNVHVEIPKRLSREERKLLKELAKK 363 (369)
T ss_pred ECCCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 9999999753 345899999999999999999999999999864
No 15
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.6e-81 Score=623.40 Aligned_cols=333 Identities=35% Similarity=0.645 Sum_probs=293.7
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhhCCccccccccccccccccccCC--C---CC
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG--G---GG 72 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~----~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~~--~---~~ 72 (402)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||+||+.||+||+.++.++++ + +.
T Consensus 7 ~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~~~~g~ 86 (365)
T PRK14285 7 EILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEGFSGGF 86 (365)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccccCCCc
Confidence 69999999999999999999999999999974 279999999999999999999999999988764311 1 10
Q ss_pred C-----CCCCcccccccccCCCCCCCCCCCccccCCcceeeccccccccccccccceecceeeeecCCccCCCcccCc-e
Q 015690 73 G-----AHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-S 146 (402)
Q Consensus 73 ~-----~~d~~diF~~~Fgg~~~gg~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~-~ 146 (402)
+ +.++.|+|++|||++. ++.+.+.+.++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|..... .
T Consensus 87 ~~~~~~~~~~~d~f~~~fgg~~---~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~ 163 (365)
T PRK14285 87 SGFSDIFEDFGDIFDSFFTGNR---GQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSP 163 (365)
T ss_pred cccccccccHHHHHHHhhcCCc---CCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCCC
Confidence 1 1234578999997421 11112234679999999999999999999999999999999999999998765 4
Q ss_pred eeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEEecCCC
Q 015690 147 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGE 226 (402)
Q Consensus 147 ~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~ge 226 (402)
.+|+.|+|+|+++. ++||+ +++.+|+.|.|+|.++. +.|+.|+|++++.+.++++|+||||+++|++|+|+|+
T Consensus 164 ~~C~~C~G~G~~~~----~~G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~ 236 (365)
T PRK14285 164 SICNMCNGSGRVMQ----GGGFF-RVTTTCPKCYGNGKIIS--NPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGK 236 (365)
T ss_pred ccCCCccCceeEEe----cCcee-EEeeecCCCCCcccccC--CCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEeec
Confidence 78999999997653 56787 78999999999999986 8999999999999999999999999999999999999
Q ss_pred cCCCC-CCCCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceEEecCC
Q 015690 227 ADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDE 305 (402)
Q Consensus 227 G~~~~-g~~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~~i~g~ 305 (402)
|++.+ +..+|||||+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||+.|.|.||++ +++|++++|+|+
T Consensus 237 G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g--~~~g~~irl~Gk 314 (365)
T PRK14285 237 GSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKG--TENDEQIIIKNE 314 (365)
T ss_pred cccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCC--cCCCcEEEECCC
Confidence 99966 466899999999999999999999999999999999999999999999999899999998 799999999999
Q ss_pred CCCCCCCCCCCCcEEEEEEEeCCCCCCHHHHHHHHhhCCCCC
Q 015690 306 GMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRT 347 (402)
Q Consensus 306 Gmp~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~~~ 347 (402)
|||..+. ..+|||||+|+|.||+.|+++++++|++++..-+
T Consensus 315 G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~~l~~l~~~~~ 355 (365)
T PRK14285 315 GMPILHT-EKFGNLILIIKIKTPKNLNSNAIKLLENLSKELK 355 (365)
T ss_pred CccCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 9997643 3579999999999999999999999999986543
No 16
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.9e-81 Score=625.98 Aligned_cols=329 Identities=32% Similarity=0.591 Sum_probs=283.2
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhhCCccccccccccccccccccCC-------C
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG-------G 70 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~----~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~~-------~ 70 (402)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||||||||+||++||+||+.+..+++. +
T Consensus 13 ~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~~~~~~~ 92 (392)
T PRK14279 13 KELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGRRFDGGG 92 (392)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccccccccCCC
Confidence 69999999999999999999999999999983 389999999999999999999999999743221110 0
Q ss_pred C-CC--------CCCCc---------------ccccccccCCCCCCCCCCCccccCCcceeeccccccccccccccceec
Q 015690 71 G-GG--------AHDPF---------------DIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLS 126 (402)
Q Consensus 71 ~-~~--------~~d~~---------------diF~~~Fgg~~~gg~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~ 126 (402)
+ ++ .++++ |+|++|||++ +++.+..+++++.|+.+.|.|||+|+|+|+++++.
T Consensus 93 ~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~---~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~~v~ 169 (392)
T PRK14279 93 GFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRG---GGSARPSRPRRGNDLETETTLDFVEAAKGVTMPLR 169 (392)
T ss_pred CCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCC---CcccccCCCCCCCCeEEEEEEEHHHHhCCeEEEEe
Confidence 0 00 12222 3444555421 11112233467899999999999999999999999
Q ss_pred ceeeeecCCccCCCcccCc-eeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcE
Q 015690 127 LSRNVICTKCKGKGSKSGA-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKK 205 (402)
Q Consensus 127 ~~r~~~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~ 205 (402)
+.+.+.|+.|+|+|..... ..+|+.|+|+|+++..+ | ++ +++++|+.|+|+|.++. +.|+.|+|++++.+.+
T Consensus 170 ~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g--~~-~~~~~C~~C~G~G~~i~--~~C~~C~G~g~v~~~~ 242 (392)
T PRK14279 170 LTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ--G--AF-GFSEPCTDCRGTGSIIE--DPCEECKGTGVTTRTR 242 (392)
T ss_pred eeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe--c--ce-EEEEecCCCCceeEEeC--CcCCCCCCCeEEEEee
Confidence 9999999999999998765 47899999999876654 3 33 56799999999999986 8899999999999999
Q ss_pred EEEEEecCCCcCCCEEecCCCcCCCC-CCCCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEE
Q 015690 206 VLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQL 284 (402)
Q Consensus 206 ~l~V~Ip~G~~~G~~i~~~geG~~~~-g~~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l 284 (402)
+++|.||||+++|++|+|+|+|++.+ +..+|||||+|+++||+.|+|+|+||++++.|||.+||+|+++.|+||||+ +
T Consensus 243 ~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~-i 321 (392)
T PRK14279 243 TINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGP-V 321 (392)
T ss_pred eeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCce-E
Confidence 99999999999999999999999865 567899999999999999999999999999999999999999999999998 8
Q ss_pred EEEeCCCccccCCceEEecCCCCCCCCCCCCCCcEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015690 285 LIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 345 (402)
Q Consensus 285 ~v~i~~g~vi~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 345 (402)
.|+||+| +++|++++|+|+|||.. ...+|||||+|+|.||++|+++|+++|++++..
T Consensus 322 ~v~Ip~g--~~~g~~iri~g~G~p~~--~~~~GDL~I~~~v~~P~~Ls~~q~~~l~~~~~~ 378 (392)
T PRK14279 322 GVKVPAG--TADGRILRVRGRGVPKR--SGGAGDLLVTVKVAVPPNLDGAAAEALEAYAEA 378 (392)
T ss_pred EEEECCC--CCCCCEEEECCCCCCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 8999998 79999999999999963 346899999999999999999999999999963
No 17
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-80 Score=626.39 Aligned_cols=337 Identities=34% Similarity=0.640 Sum_probs=295.7
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhhCCccccccccccccccccccC----CCC--
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGM----GGG-- 71 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~----~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~----~~~-- 71 (402)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||||||||.||+.||+||+++++++. +++
T Consensus 7 ~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~~~~~~ 86 (397)
T PRK14281 7 EVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGGGPGYG 86 (397)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCCCCCCC
Confidence 79999999999999999999999999999974 38999999999999999999999999998775311 111
Q ss_pred CCCCCCcccc---cccccCCC-C------------CCCCCCC--ccccCCcceeeccccccccccccccceecceeeeec
Q 015690 72 GGAHDPFDIF---QSFFGGSP-F------------GGGSSRG--RRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVIC 133 (402)
Q Consensus 72 ~~~~d~~diF---~~~Fgg~~-~------------gg~~~~~--~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C 133 (402)
++++++.|+| ++|||+++ + +++..+. ..+.++.|+.+.|.|||+|+|+|+++++.+++.+.|
T Consensus 87 ~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~r~~~C 166 (397)
T PRK14281 87 GGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPC 166 (397)
T ss_pred cCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEEeeecC
Confidence 0112344554 57787421 1 1110111 123478999999999999999999999999999999
Q ss_pred CCccCCCcccCceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecC
Q 015690 134 TKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEK 213 (402)
Q Consensus 134 ~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~ 213 (402)
+.|+|+|.......+|+.|+|+|+++..+++++|++++ +++|+.|.|+|.++. ++|+.|+|++++.+.++++|+||+
T Consensus 167 ~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~ 243 (397)
T PRK14281 167 KECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVN-ITACPTCGGEGRVVK--DRCPACYGEGIKQGEVTVKVTVPA 243 (397)
T ss_pred CCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEE-EEecCCCcceeeeeC--CCCCCCCCCccEecceEEEEecCC
Confidence 99999999887668999999999999999999998765 679999999999986 889999999999999999999999
Q ss_pred CCcCCCEEecCCCcCCCC-CCCCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCc
Q 015690 214 GMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGE 292 (402)
Q Consensus 214 G~~~G~~i~~~geG~~~~-g~~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~ 292 (402)
|+++|++|+|+|+|++.+ +..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+ +.|+||++
T Consensus 244 G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ip~g- 321 (397)
T PRK14281 244 GVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGA-VKLTIPAG- 321 (397)
T ss_pred CCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCcc-EEEEeCCc-
Confidence 999999999999999865 568999999999999999999999999999999999999999999999997 78999998
Q ss_pred cccCCceEEecCCCCCCCCCCCCCCcEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015690 293 VVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 345 (402)
Q Consensus 293 vi~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 345 (402)
+++|++++|+|+|||..+ ...+|||||+|+|.||+.||++|+++|++|++.
T Consensus 322 -~~~G~~~ri~g~G~P~~~-~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~ 372 (397)
T PRK14281 322 -TQPETMLRIPGKGIGHLR-GSGRGDQYVRVNVFVPKEVSHQDKELLKELKKS 372 (397)
T ss_pred -cCCCcEEEEcCCCCCCCC-CCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 799999999999999764 346899999999999999999999999999963
No 18
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.5e-80 Score=623.00 Aligned_cols=333 Identities=33% Similarity=0.609 Sum_probs=289.6
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhhCCccccccccccccccccccCC--CCCCC-
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG--GGGGA- 74 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~----~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~~--~~~~~- 74 (402)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||+||++||+||++++.++.+ +++++
T Consensus 5 ~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~~g~~ 84 (391)
T PRK14284 5 TILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGGAGMG 84 (391)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCCCCcC
Confidence 69999999999999999999999999999984 379999999999999999999999999987643211 11110
Q ss_pred -----------------CCCcccccccccCCC--CCCCCCCCccccCCcceeeccccccccccccccceecceeeeecCC
Q 015690 75 -----------------HDPFDIFQSFFGGSP--FGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTK 135 (402)
Q Consensus 75 -----------------~d~~diF~~~Fgg~~--~gg~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~ 135 (402)
..+.|+|++|||+.+ |++ +....++.++.|+.+.|.|||+|+|+|+++++.+++.+.|+.
T Consensus 85 ~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~-~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~ 163 (391)
T PRK14284 85 NMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGM-RGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDA 163 (391)
T ss_pred cccchhhhccccccccccccccchhhhccCccccccc-cccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeeccCCC
Confidence 011377888887421 111 111223467899999999999999999999999999999999
Q ss_pred ccCCCcccCc-eeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCC
Q 015690 136 CKGKGSKSGA-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKG 214 (402)
Q Consensus 136 C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G 214 (402)
|+|+|..... ..+|+.|+|+|+++..+ |++ +++.+|+.|+|+|.++. +.|+.|+|++++.+.++++|+||||
T Consensus 164 C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G 236 (391)
T PRK14284 164 CSGSGANSSQGIKVCDRCKGSGQVVQSR----GFF-SMASTCPECGGEGRVIT--DPCSVCRGQGRIKDKRSVHVHIPAG 236 (391)
T ss_pred CcccccCCCCCCeecCccCCeeEEEEEe----ceE-EEEEECCCCCCCCcccC--CcCCCCCCcceecceEEEEEEECCC
Confidence 9999998765 47899999999877543 454 47889999999999986 8899999999999999999999999
Q ss_pred CcCCCEEecCCCcCCCC-CCCCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccC-CcEEEEEeCCCc
Q 015690 215 MQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLD-GRQLLIKSQPGE 292 (402)
Q Consensus 215 ~~~G~~i~~~geG~~~~-g~~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tld-G~~l~v~i~~g~ 292 (402)
+++|++|+|+|+|++.+ +..+|||||+|++++|+.|+|+|+||++++.|||++||+|+++.|+||| |+.|.|+||++
T Consensus 237 ~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g- 315 (391)
T PRK14284 237 VDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEG- 315 (391)
T ss_pred CCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCc-
Confidence 99999999999999965 6788999999999999999999999999999999999999999999999 67799999998
Q ss_pred cccCCceEEecCCCCCCCCCCCCCCcEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015690 293 VVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 345 (402)
Q Consensus 293 vi~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 345 (402)
+++|++++|+|+|||..+ ...+|||||+|+|.||+.|+++|+++|++++..
T Consensus 316 -~~~g~~~~i~g~G~p~~~-~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~ 366 (391)
T PRK14284 316 -IQSGTILKVRGQGFPNVH-GKGRGDLLVRISVETPQNLSEEQKELLRQFAAT 366 (391)
T ss_pred -cCCCeEEEECCCCCCCCC-CCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 799999999999999764 346899999999999999999999999999853
No 19
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=6e-80 Score=614.24 Aligned_cols=336 Identities=36% Similarity=0.667 Sum_probs=298.6
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhhCCccccccccccccccccccCCC-CC-----
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-GG----- 72 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~---~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~~~-~~----- 72 (402)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+||||+.+|+.||+||++++.++.++ ++
T Consensus 4 ~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~~~~ 83 (354)
T TIGR02349 4 EILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGFNGF 83 (354)
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCcCCc
Confidence 69999999999999999999999999999974 3899999999999999999999999999887642111 11
Q ss_pred ---CCCCCcccccccccCCCCCCCCCCCccccCCcceeeccccccccccccccceecceeeeecCCccCCCcccCc-eee
Q 015690 73 ---GAHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMK 148 (402)
Q Consensus 73 ---~~~d~~diF~~~Fgg~~~gg~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~-~~~ 148 (402)
++.++.|+|++|||++ ++++..+...++++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|..... ..+
T Consensus 84 ~~~~~~~~~~~f~~~fg~~-~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~ 162 (354)
T TIGR02349 84 DIGFFGDFGDIFGDFFGGG-GGSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKT 162 (354)
T ss_pred cccCcCchhhhHHHHhccC-cccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCcc
Confidence 1123458899999742 11111112345688999999999999999999999999999999999999998765 478
Q ss_pred CCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEEecCCCcC
Q 015690 149 CSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEAD 228 (402)
Q Consensus 149 C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~geG~ 228 (402)
|+.|+|+|+++..++++|||+++ +++|+.|.|+|.++. +.|+.|+|++++.+.++++|+||+|+++|++|+|+|+|+
T Consensus 163 C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~ 239 (354)
T TIGR02349 163 CPTCGGTGQVRRQQGTPFGFFQQ-QQTCPTCGGEGKIIK--EPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKGN 239 (354)
T ss_pred CCCCCCeeEEEEEEeccCCceEE-EEecCCCCCcceecC--CCCCCCCCCcEecccceEEEEECCCCCCCCEEEEecCcc
Confidence 99999999999999999999886 679999999999986 789999999999999999999999999999999999999
Q ss_pred CC-CCCCCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceEEecCCCC
Q 015690 229 EA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGM 307 (402)
Q Consensus 229 ~~-~g~~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~~i~g~Gm 307 (402)
+. ++..+|||||+|++++|+.|+|+|+||++++.|||+|||+|+++.|+|||| .+.|.||++ +++|++++|+|+||
T Consensus 240 ~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG-~i~v~ip~g--~~~g~~~~i~g~G~ 316 (354)
T TIGR02349 240 AGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDG-DVKLKIPAG--TQSGTVFRLKGKGV 316 (354)
T ss_pred CCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCc-eEEEEECCc--ccCCcEEEECCCCc
Confidence 84 467889999999999999999999999999999999999999999999999 589999998 79999999999999
Q ss_pred CCCCCCCCCCcEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015690 308 PMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 345 (402)
Q Consensus 308 p~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 345 (402)
|..+. ..+|||||+|+|.||+.|+++++++|+++|..
T Consensus 317 p~~~~-~~~GDL~i~~~v~~P~~l~~~~~~~l~~~~~~ 353 (354)
T TIGR02349 317 PRLRG-NGRGDLLVTVKVETPKNLSKEQKELLEELAEA 353 (354)
T ss_pred CCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 97643 36899999999999999999999999999853
No 20
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-79 Score=614.01 Aligned_cols=331 Identities=33% Similarity=0.606 Sum_probs=288.8
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhhCCccccccccccccccccccCC-CCC-CC-
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG-GGG-GA- 74 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~----~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~~-~~~-~~- 74 (402)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||||||||.||+.||+||+++++++.+ ++. +.
T Consensus 8 ~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~~g~~~~~ 87 (373)
T PRK14301 8 EVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGFGGFSSAE 87 (373)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCCCCccccc
Confidence 79999999999999999999999999999974 279999999999999999999999999988764211 111 11
Q ss_pred ---CCCcccccccccCCCCCCCCCCCccccCCcceeeccccccccccccccceecceeeeecCCccCCCcccCce-eeCC
Q 015690 75 ---HDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCS 150 (402)
Q Consensus 75 ---~d~~diF~~~Fgg~~~gg~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~-~~C~ 150 (402)
.++.|||++|||+++. ++.+..++.++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|...... .+|+
T Consensus 88 ~~~~~f~d~f~~~fg~g~~--~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~ 165 (373)
T PRK14301 88 DIFSHFSDIFGDLFGFSGG--GSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCR 165 (373)
T ss_pred ccccchHHHHHHHhhccCc--ccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcccC
Confidence 1223677777763211 111223356899999999999999999999999999999999999999987653 7899
Q ss_pred CCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEEecCCCcCCC
Q 015690 151 GCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA 230 (402)
Q Consensus 151 ~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~geG~~~ 230 (402)
.|+|+|+++.. . |++ +++.+|+.|+|+|.++. +.|+.|+|++++.+.++++|+||+|+++|++|+|+|+|++.
T Consensus 166 ~C~G~G~v~~~--~--G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~ 238 (373)
T PRK14301 166 HCGGSGQVRQS--Q--GFF-QIAVPCPVCRGEGRVIT--HPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPG 238 (373)
T ss_pred CccCeeEEEEE--e--eeE-EEEEeCCCCCceeeecC--CCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEeccccCC
Confidence 99999987643 3 454 55999999999999986 88999999999999999999999999999999999999985
Q ss_pred C-CCCCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceEEecCCCCCC
Q 015690 231 P-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPM 309 (402)
Q Consensus 231 ~-g~~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~~i~g~Gmp~ 309 (402)
+ +..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|+||++ +++|++++|+|+|||.
T Consensus 239 ~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-i~v~ip~g--~~~g~~~ri~g~G~p~ 315 (373)
T PRK14301 239 VHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDP-VTLDIPKG--TQSGEVFRLRGKGLPY 315 (373)
T ss_pred CCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCcc-EEEEECCC--cCCCcEEEEcCCCCCC
Confidence 4 677899999999999999999999999999999999999999999999998 89999998 7999999999999997
Q ss_pred CCCCCCCCcEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015690 310 YQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 345 (402)
Q Consensus 310 ~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 345 (402)
.+ ...+|||||+|+|.||+.|+++|+++|++++..
T Consensus 316 ~~-~~~~GDL~I~~~V~~P~~l~~~q~~~l~~l~~~ 350 (373)
T PRK14301 316 LG-SSQKGDLLVEVSVVTPTKLTKRQEELLREFEAL 350 (373)
T ss_pred CC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 64 346899999999999999999999999999853
No 21
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3e-79 Score=613.91 Aligned_cols=327 Identities=32% Similarity=0.613 Sum_probs=285.3
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhhCCccccccccc----cccccccccCC-C-C
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQ----YGEDALKEGMG-G-G 71 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~----~~kFk~i~~AYevLsd~~kR~~YD~----~G~~~~~~g~~-~-~ 71 (402)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||+||++||+ ||++++..+.+ + +
T Consensus 13 ~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~~~~~~~ 92 (389)
T PRK14295 13 KVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPGPGGGGG 92 (389)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccCCCCCCC
Confidence 69999999999999999999999999999973 3899999999999999999999999 99988753211 1 0
Q ss_pred CC-CCCCc--------------------ccccccccCCCCCCCCCCCccccCCcceeeccccccccccccccceecceee
Q 015690 72 GG-AHDPF--------------------DIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRN 130 (402)
Q Consensus 72 ~~-~~d~~--------------------diF~~~Fgg~~~gg~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~ 130 (402)
++ .++++ |+|+.|||+ ++ +.++++++.|+.+.|.|||+|+|+|+++++.+++.
T Consensus 93 ~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~-----~~-~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~ 166 (389)
T PRK14295 93 GGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNR-----GG-RRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQ 166 (389)
T ss_pred CCCCcccccccccccccccccccccchhhhhcccccC-----CC-CCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeecc
Confidence 10 01222 334444432 11 12334678999999999999999999999999999
Q ss_pred eecCCccCCCcccCc-eeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEE
Q 015690 131 VICTKCKGKGSKSGA-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEV 209 (402)
Q Consensus 131 ~~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V 209 (402)
+.|++|+|+|..... ..+|+.|+|+|+++..+ | ++ +++.+|+.|+|+|.++. +.|+.|+|++++.+.++++|
T Consensus 167 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g--~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~~~~~~~l~V 239 (389)
T PRK14295 167 APCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS--G--GF-SLSEPCPDCKGRGLIAD--DPCLVCKGSGRAKSSRTMQV 239 (389)
T ss_pred ccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe--c--ce-EEEEecCCCcceeEEec--cCCCCCCCCceEeeeeEEEE
Confidence 999999999998776 47899999999877654 3 33 46789999999999986 89999999999999999999
Q ss_pred EecCCCcCCCEEecCCCcCCC-CCCCCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEe
Q 015690 210 IVEKGMQNGQKITFPGEADEA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKS 288 (402)
Q Consensus 210 ~Ip~G~~~G~~i~~~geG~~~-~g~~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i 288 (402)
.||+|+++|++|+|+|+|++. ++..+|||||+|.+++|+.|+|+|+||++++.|||++||+|+++.|+||||+.|.|+|
T Consensus 240 ~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~i 319 (389)
T PRK14295 240 RIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKL 319 (389)
T ss_pred EeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEE
Confidence 999999999999999999984 4677899999999999999999999999999999999999999999999999899999
Q ss_pred CCCccccCCceEEecCCCCCCCCCCCCCCcEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015690 289 QPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 345 (402)
Q Consensus 289 ~~g~vi~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 345 (402)
|++ +++|++++|+|+|||.. .+.+|||||+|+|.||+.|+++|+++|++++..
T Consensus 320 p~g--~~~g~~iri~G~G~p~~--~~~~GDL~i~~~v~~P~~Ls~~qk~~l~~l~~~ 372 (389)
T PRK14295 320 PPG--TPNGRVLRVRGKGAVRK--DGTRGDLLVTVEVAVPKDLSGKAREALEAFREA 372 (389)
T ss_pred CCc--cCCCcEEEECCCCcCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 998 79999999999999964 346899999999999999999999999999863
No 22
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.6e-79 Score=611.03 Aligned_cols=332 Identities=30% Similarity=0.554 Sum_probs=290.2
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhhCCcccccccccccccccccc-CCCCCCC--
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEG-MGGGGGA-- 74 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~----~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g-~~~~~~~-- 74 (402)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||.+|++||+||+++++++ +++.+++
T Consensus 8 ~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~~~~~~~ 87 (366)
T PRK14294 8 EILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSGFSGFDD 87 (366)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCCcCcccc
Confidence 69999999999999999999999999999984 3899999999999999999999999999887642 1111111
Q ss_pred --CCCcccccccccCCCCCCCCCCCccccCCcceeeccccccccccccccceecceeeeecCCccCCCcccCc-eeeCCC
Q 015690 75 --HDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMKCSG 151 (402)
Q Consensus 75 --~d~~diF~~~Fgg~~~gg~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~-~~~C~~ 151 (402)
.++.|+|++|||.++++ +++....+.++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|..... ..+|+.
T Consensus 88 ~~~~~~d~f~~~fg~g~~~-~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~ 166 (366)
T PRK14294 88 IFSSFGDIFEDFFGFGGGR-RGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQ 166 (366)
T ss_pred chhhhhhhHHHhhccCCCc-CCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcccCCC
Confidence 23458899999721111 11111234678999999999999999999999999999999999999998765 478999
Q ss_pred CcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEEecCCCcCCC-
Q 015690 152 CQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA- 230 (402)
Q Consensus 152 C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~geG~~~- 230 (402)
|+|+|+++.. + ||+ +++++|+.|+|+|.++. +.|+.|+|++++.+.++++|.||+|+++|++|+|+|+|++.
T Consensus 167 C~G~G~~~~~--~--G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~ 239 (366)
T PRK14294 167 CGGSGQVTQS--Q--GFF-SIRTTCPRCRGMGKVIV--SPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEAGV 239 (366)
T ss_pred cCCeEEEEEE--e--eeE-EEEeeCCCCCCcCeecC--cCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccCccCCC
Confidence 9999987643 3 465 47899999999999986 88999999999999999999999999999999999999984
Q ss_pred CCCCCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceEEecCCCCCCC
Q 015690 231 PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMY 310 (402)
Q Consensus 231 ~g~~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~~i~g~Gmp~~ 310 (402)
++..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+ +.|.||+| +++|++++|+|+|||..
T Consensus 240 ~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g--~~~g~~iri~G~G~p~~ 316 (366)
T PRK14294 240 RGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGE-RELKIPKG--TQPGDIFRFKGKGIPSL 316 (366)
T ss_pred CCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCc-EEEEECCC--cCCCCEEEECCCCCCCC
Confidence 5678999999999999999999999999999999999999999999999997 68999998 79999999999999976
Q ss_pred CCCCCCCcEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015690 311 QRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 345 (402)
Q Consensus 311 ~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 345 (402)
+. ..+|||||+|+|.||+.|+++++++|++|+..
T Consensus 317 ~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~~ 350 (366)
T PRK14294 317 RG-GGRGDQIIEVEVKVPTRLTKKQEELLTEFARL 350 (366)
T ss_pred CC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 43 36899999999999999999999999999953
No 23
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.5e-78 Score=605.28 Aligned_cols=338 Identities=31% Similarity=0.584 Sum_probs=294.9
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHhhCCccccccccccccccccccCCC-C-C--
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD-----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-G-G-- 72 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~-----~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~~~-~-~-- 72 (402)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||.+|++||+||+.+++++.++ + +
T Consensus 7 ~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~~~~~ 86 (365)
T PRK14290 7 KILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFNWDNF 86 (365)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCcccccc
Confidence 69999999999999999999999999999974 2899999999999999999999999999877532111 0 0
Q ss_pred -CCCCCcccccccccCCC----CCCCCCCCccccCCcceeeccccccccccccccceecceeeeecCCccCCCcccCcee
Q 015690 73 -GAHDPFDIFQSFFGGSP----FGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASM 147 (402)
Q Consensus 73 -~~~d~~diF~~~Fgg~~----~gg~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~~ 147 (402)
++.++.|+|+.|||++. +++.++.++.++++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|.......
T Consensus 87 ~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~~ 166 (365)
T PRK14290 87 THFSDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLI 166 (365)
T ss_pred ccccchhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCCCCCc
Confidence 12356689999997421 0110111122235789999999999999999999999999999999999999877668
Q ss_pred eCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEEecCCCc
Q 015690 148 KCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEA 227 (402)
Q Consensus 148 ~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~geG 227 (402)
+|+.|+|+|+++..++.|+ ++++.+.+|+.|.|+|.++. +.|+.|+|++++.+.++++|+||||+.+|++|+|+|+|
T Consensus 167 ~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G 243 (365)
T PRK14290 167 TCPTCHGTGQQRIVRGQGF-FRMVTVTTCRTCGGRGRIPE--EKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVKGKG 243 (365)
T ss_pred cCCCCCCcCEEEEEeccCe-EEEEEEEeCCCCCCceeEcc--CCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEEcccc
Confidence 9999999998887776554 44667899999999999975 89999999999999999999999999999999999999
Q ss_pred CCCCCCCCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceEEecCCCC
Q 015690 228 DEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGM 307 (402)
Q Consensus 228 ~~~~g~~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~~i~g~Gm 307 (402)
++ ++..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+|++|+ +.|+||++ +++|++++|+|+||
T Consensus 244 ~~-~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~-i~V~Ip~g--~~~g~~iri~g~G~ 319 (365)
T PRK14290 244 QS-YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREK-YNLKIPEG--TQPGEVLKIKGAGM 319 (365)
T ss_pred CC-CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCce-EEEEECCc--cCCCcEEEECCCCC
Confidence 96 7888999999999999999999999999999999999999999999999996 89999998 79999999999999
Q ss_pred CCCCCCCCCCcEEEEEEEeCCCCCCHHHHHHHHhhCCCCC
Q 015690 308 PMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRT 347 (402)
Q Consensus 308 p~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~~~ 347 (402)
|.... ..+|||||+|+|.+|+.|+++++++|+++|+.+.
T Consensus 320 p~~~~-~~~GDL~V~~~V~~P~~l~~~~~~ll~~~~~~~~ 358 (365)
T PRK14290 320 PHLNG-HGSGDLLVRINVEVPKRLTSKQKELIREFFDIKE 358 (365)
T ss_pred CCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 97543 3589999999999999999999999999997543
No 24
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.6e-78 Score=603.69 Aligned_cols=329 Identities=37% Similarity=0.695 Sum_probs=288.3
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhhCCccccccccccccccccccCC-CC-CC--
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG-GG-GG-- 73 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~----~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~~-~~-~~-- 73 (402)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+||+||.+|+.||+||++++..+.+ ++ ++
T Consensus 8 ~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~~~~~~ 87 (371)
T PRK10767 8 EVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGGFGGGG 87 (371)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCCCCCCcc
Confidence 69999999999999999999999999999973 279999999999999999999999999988763221 11 11
Q ss_pred -CCC-CcccccccccCCCCCCCCCCCccccCCcceeeccccccccccccccceecceeeeecCCccCCCcccCce-eeCC
Q 015690 74 -AHD-PFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCS 150 (402)
Q Consensus 74 -~~d-~~diF~~~Fgg~~~gg~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~-~~C~ 150 (402)
+.+ +.|||+.|||+++ + ++.++++++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|...... .+|+
T Consensus 88 ~~~~~f~~~f~~~fgg~~---~-~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~ 163 (371)
T PRK10767 88 GFGDIFGDIFGDIFGGGR---G-GGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCP 163 (371)
T ss_pred ccccchhhhhhhhccCCc---c-ccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCC
Confidence 113 2366777776311 1 1122356899999999999999999999999999999999999999987654 6899
Q ss_pred CCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEEecCCCcCC-
Q 015690 151 GCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADE- 229 (402)
Q Consensus 151 ~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~geG~~- 229 (402)
.|+|+|+++..+ ||+ +++.+|+.|+|+|.++. +.|+.|+|++++.+.+.++|+||+|+++|++|+|+|+|++
T Consensus 164 ~C~G~G~~~~~~----g~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~ 236 (371)
T PRK10767 164 TCHGAGQVRMQQ----GFF-TVQQTCPTCHGRGKIIK--DPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEAG 236 (371)
T ss_pred CCCCeeEEEEee----ceE-EEEEeCCCCCCceeECC--CCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEecCccCC
Confidence 999999876544 465 47889999999999975 8899999999999999999999999999999999999998
Q ss_pred CCCCCCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceEEecCCCCCC
Q 015690 230 APDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPM 309 (402)
Q Consensus 230 ~~g~~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~~i~g~Gmp~ 309 (402)
.++..+|||||+|++++|+.|+|+|+||++++.|||++||+|+++.|+|||| .+.|+||++ +++|++++|+|+|||.
T Consensus 237 ~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG-~i~v~ip~g--~~~g~~~~i~g~G~p~ 313 (371)
T PRK10767 237 ERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDG-RVKLKIPEG--TQTGKLFRLRGKGVKS 313 (371)
T ss_pred CCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCC-cEEEEeCCC--CCCCCEEEECCCCcCC
Confidence 4567899999999999999999999999999999999999999999999999 489999998 7999999999999997
Q ss_pred CCCCCCCCcEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015690 310 YQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 345 (402)
Q Consensus 310 ~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 345 (402)
.+ ...+|||||+|+|.||+.|+++++++|++++..
T Consensus 314 ~~-~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l~~~ 348 (371)
T PRK10767 314 VR-SGARGDLYCQVVVETPVNLTKRQKELLEEFEES 348 (371)
T ss_pred CC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 64 346899999999999999999999999999963
No 25
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.8e-78 Score=601.69 Aligned_cols=332 Identities=32% Similarity=0.601 Sum_probs=288.0
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhhCCccccccccccccccccccC--C--CCCCC
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGM--G--GGGGA 74 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~---~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~--~--~~~~~ 74 (402)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+||+|+.+|+.||+||++++..+. + ++.++
T Consensus 7 ~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~g~~~~ 86 (372)
T PRK14300 7 QILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGGGNHGG 86 (372)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCCCCCCc
Confidence 79999999999999999999999999999974 37999999999999999999999999998776321 1 11111
Q ss_pred --CCCcccccccccCCCCCCCC-CCC-ccccCCcceeeccccccccccccccceecceeeeecCCccCCCcccCc-eeeC
Q 015690 75 --HDPFDIFQSFFGGSPFGGGS-SRG-RRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMKC 149 (402)
Q Consensus 75 --~d~~diF~~~Fgg~~~gg~~-~~~-~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~-~~~C 149 (402)
.++.++|+.||++. |++++ +++ ..+.++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|..... ..+|
T Consensus 87 ~~~~~~~~f~~~f~~~-~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C 165 (372)
T PRK14300 87 FHPDINDIFGDFFSDF-MGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTC 165 (372)
T ss_pred cccchhhhHHHHHHhh-cCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccC
Confidence 13335566555421 11111 111 123578999999999999999999999999999999999999998765 4789
Q ss_pred CCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEEecCCCcCC
Q 015690 150 SGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADE 229 (402)
Q Consensus 150 ~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~geG~~ 229 (402)
+.|+|+|+++.. . ||++ ++.+|+.|+|+|.++. +.|++|+|++++.+.+.++|.||+|+++|++|+|+|+|++
T Consensus 166 ~~C~G~G~~~~~--~--g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~ 238 (372)
T PRK14300 166 DACSGVGATRMQ--Q--GFFT-IEQACHKCQGNGQIIK--NPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGEA 238 (372)
T ss_pred CCccCeEEEEEe--e--ceEE-EEEeCCCCCccceEeC--CCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEeccccC
Confidence 999999987642 2 5665 7889999999999986 8999999999999999999999999999999999999998
Q ss_pred C-CCCCCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceEEecCCCCC
Q 015690 230 A-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMP 308 (402)
Q Consensus 230 ~-~g~~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~~i~g~Gmp 308 (402)
. ++..+|||||+|++++|+.|+|+|+||++++.|+|++||+|+++.|+||||+.|.|+||+| +++|++++|+|+|||
T Consensus 239 ~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g--~~~g~~iri~g~G~p 316 (372)
T PRK14300 239 GIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAG--TQNGDQLRLRSKGMS 316 (372)
T ss_pred CCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCc--cCCCcEEEECCCCCC
Confidence 4 5778999999999999999999999999999999999999999999999998899999999 799999999999999
Q ss_pred CCCCCCCCCcEEEEEEEeCCCCCCHHHHHHHHhhCC
Q 015690 309 MYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 344 (402)
Q Consensus 309 ~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~ 344 (402)
..+ ...+|||||+|+|.||++||++|+++|++++.
T Consensus 317 ~~~-~~~~GDL~V~~~v~~P~~ls~~qk~~l~~l~~ 351 (372)
T PRK14300 317 KMR-STIRGDMLTHIHVEVPKNLSKRQRELLEEFKK 351 (372)
T ss_pred CCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 753 34689999999999999999999999999995
No 26
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9.4e-78 Score=602.19 Aligned_cols=330 Identities=30% Similarity=0.576 Sum_probs=289.9
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhhCCccccccccccccccccccCCCC-CCCC--
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGG-GGAH-- 75 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~---~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~~~~-~~~~-- 75 (402)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||||||||.||++||+||++++.+....+ ....
T Consensus 9 ~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~~~~~~~~~ 88 (378)
T PRK14283 9 EVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQEDIFNNINF 88 (378)
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccccccccccccccCc
Confidence 69999999999999999999999999999974 38999999999999999999999999998765211000 0001
Q ss_pred ---------CCccccccc-ccCCCCCCCCCCCccccCCcceeeccccccccccccccceecceeeeecCCccCCCcccCc
Q 015690 76 ---------DPFDIFQSF-FGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA 145 (402)
Q Consensus 76 ---------d~~diF~~~-Fgg~~~gg~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~ 145 (402)
++.++|+.| ||+ + +..++.++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|.....
T Consensus 89 ~~~~~~~~~~~~~~f~~~~fgg-----~--~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 161 (378)
T PRK14283 89 EDIFQGFGFGIGNIFDMFGFGG-----G--SRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGS 161 (378)
T ss_pred cccccccccchhhhccccccCC-----C--CCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCC
Confidence 122444444 331 1 11234578999999999999999999999999999999999999987665
Q ss_pred -eeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEEecC
Q 015690 146 -SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFP 224 (402)
Q Consensus 146 -~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~ 224 (402)
..+|+.|+|+|+++..+++++|++++ +.+|+.|.|+|..+. +.|+.|+|++++.+.+.++|.||+|+++|++|+|+
T Consensus 162 ~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l~ 238 (378)
T PRK14283 162 EVKTCPTCGGTGQVKQVRNTILGQMMN-VTTCPDCQGEGKIVE--KPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVS 238 (378)
T ss_pred CCccCCCcCCccEEEEEEeccCceEEE-EEECCCCCccceecC--CCCCCCCCceeeccceeEEEEECCCCCCCcEEEEe
Confidence 47899999999999999999998764 579999999999975 88999999999999999999999999999999999
Q ss_pred CCcCCCC-CCCCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceEEec
Q 015690 225 GEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAIN 303 (402)
Q Consensus 225 geG~~~~-g~~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~~i~ 303 (402)
|+|++.+ +..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+|||| .|.|.||++ +++|++++|+
T Consensus 239 g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG-~i~v~ip~g--~~~g~~~ri~ 315 (378)
T PRK14283 239 GEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDG-PVELKIPAG--TQSGTTFRLK 315 (378)
T ss_pred ccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCc-eEEEEeCCC--CCCCCEEEEC
Confidence 9999854 57899999999999999999999999999999999999999999999999 589999998 7899999999
Q ss_pred CCCCCCCCCCCCCCcEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015690 304 DEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 345 (402)
Q Consensus 304 g~Gmp~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 345 (402)
|+|||... ...+|||||+|+|.||++|+++|+++|++++..
T Consensus 316 g~G~p~~~-~~~~GdL~v~~~v~~P~~l~~~q~~ll~~~~~~ 356 (378)
T PRK14283 316 GHGMPSLR-WSGKGNLYVKVKVVVPKKLSPKQKELLREFASI 356 (378)
T ss_pred CCCCCCCC-CCCCCCEEEEEEEEeCCCCCHHHHHHHHHHHhh
Confidence 99999764 346899999999999999999999999999953
No 27
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-77 Score=600.34 Aligned_cols=338 Identities=32% Similarity=0.610 Sum_probs=297.9
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhhCCccccccccccccccccccCC--CCCCCCC
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG--GGGGAHD 76 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~---~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~~--~~~~~~d 76 (402)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||.+|++||+||++++.++.+ +.++..+
T Consensus 7 ~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~~~~~~~ 86 (374)
T PRK14293 7 EILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDMGDMGG 86 (374)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCCcccccc
Confidence 79999999999999999999999999999975 389999999999999999999999999987763211 1111123
Q ss_pred CcccccccccCC-CCCC-C-CCCCccccCCcceeeccccccccccccccceecceeeeecCCccCCCcccCc-eeeCCCC
Q 015690 77 PFDIFQSFFGGS-PFGG-G-SSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMKCSGC 152 (402)
Q Consensus 77 ~~diF~~~Fgg~-~~gg-~-~~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~-~~~C~~C 152 (402)
+.|+|++|||+. ++++ + +.+.+++.++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|..... ..+|+.|
T Consensus 87 ~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C 166 (374)
T PRK14293 87 FADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTC 166 (374)
T ss_pred hHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCCC
Confidence 447899998741 1111 0 1112234678999999999999999999999999999999999999998765 4789999
Q ss_pred cCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEEecCCCcCCC-C
Q 015690 153 QGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA-P 231 (402)
Q Consensus 153 ~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~geG~~~-~ 231 (402)
+|+|+++..++++||++++ +.+|+.|.|+|.++. +.|++|+|++++.+.++++|+||||+++|++|+|+|+|++. +
T Consensus 167 ~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G~~~~~ 243 (374)
T PRK14293 167 GGAGQVRRATRTPFGSFTQ-VSECPTCNGTGQVIE--DPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGDAGLR 243 (374)
T ss_pred CCcceEEEEEecCcceEEE-EeeCCCCCcceeEec--cCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCccCCCC
Confidence 9999999999999999876 689999999999986 88999999999999999999999999999999999999984 4
Q ss_pred CCCCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceEEecCCCCCCCC
Q 015690 232 DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQ 311 (402)
Q Consensus 232 g~~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~~i~g~Gmp~~~ 311 (402)
+..+|||||+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||+ +.|+||++ +++|++++|+|+|||..+
T Consensus 244 ~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~-~~i~ip~~--~~~g~~~ri~g~G~p~~~ 320 (374)
T PRK14293 244 GGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGP-VELTIPAG--TQPNTVLTLENKGVPRLG 320 (374)
T ss_pred CCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCC-EEEEeCCC--CCCCCEEEECCCCCCCCC
Confidence 667899999999999999999999999999999999999999999999997 78999998 799999999999999865
Q ss_pred CCCCCCcEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015690 312 RPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 345 (402)
Q Consensus 312 ~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 345 (402)
..+.+|||||+|+|.||+.|+++++++|+++|..
T Consensus 321 ~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l~~~ 354 (374)
T PRK14293 321 NPVARGDHLITVKVKIPTRISDEERELLEKLAKI 354 (374)
T ss_pred CCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5456899999999999999999999999999964
No 28
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.4e-77 Score=601.32 Aligned_cols=334 Identities=34% Similarity=0.633 Sum_probs=287.0
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhhCCccccccccccccccccccCC---C--CC-
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG---G--GG- 72 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~---~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~~---~--~~- 72 (402)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||.||++||+||++++..+.+ + +.
T Consensus 7 ~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~~~~~~ 86 (382)
T PRK14291 7 EILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQGQEGFS 86 (382)
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCccccccccc
Confidence 68999999999999999999999999999975 389999999999999999999999999987753211 0 00
Q ss_pred --CCCCCcccccccc---cC-CCCCCC----CCC--CccccCCcceeeccccccccccccccceecceeeeecCCccCCC
Q 015690 73 --GAHDPFDIFQSFF---GG-SPFGGG----SSR--GRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKG 140 (402)
Q Consensus 73 --~~~d~~diF~~~F---gg-~~~gg~----~~~--~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G 140 (402)
.+.++.|+|++|| |. +.|++. +++ ..++.++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|
T Consensus 87 ~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G 166 (382)
T PRK14291 87 DFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTG 166 (382)
T ss_pred cccCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCCCcccc
Confidence 1124456777764 21 112211 111 12345789999999999999999999999999999999999999
Q ss_pred cccCc-eeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCC
Q 015690 141 SKSGA-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQ 219 (402)
Q Consensus 141 ~~~~~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~ 219 (402)
..... ..+|+.|+|+|+++.. . ++++++.+|+.|+|+|. + ++.|+.|+|.+++.+.++++|+||||+.+|+
T Consensus 167 ~~~~~~~~~C~~C~G~G~~~~~--~---g~~~~~~~C~~C~G~G~-~--~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 238 (382)
T PRK14291 167 YDPGSGEKVCPTCGGSGEIYQR--G---GFFRISQTCPTCGGEGV-L--REPCSKCNGRGLVIKKETIKVRIPPGVDNGS 238 (382)
T ss_pred CCCCCCCccCCCCCCceEEEEe--c---ceEEEEecCCCCCCceE-E--ccCCCCCCCCceEEeeeEEEEEeCCCCCCCC
Confidence 98765 4789999999987654 1 34567899999999995 4 4899999999999999999999999999999
Q ss_pred EEecCCCcCCCC-CCCCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCc
Q 015690 220 KITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQ 298 (402)
Q Consensus 220 ~i~~~geG~~~~-g~~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~ 298 (402)
+|+|+|+|++.+ +..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+.|.|+||+| +++|+
T Consensus 239 ~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g--~~~G~ 316 (382)
T PRK14291 239 KLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPG--TKEGD 316 (382)
T ss_pred EEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCc--cCCCC
Confidence 999999999854 788999999999999999999999999999999999999999999999999899999999 79999
Q ss_pred eEEecCCCCCCCCCCCCCCcEEEEEEEeCCC--CCC------HHHHHHHHhhCCCC
Q 015690 299 FKAINDEGMPMYQRPFMRGKLYIHFTVDFPE--SLS------PDQCKMLETVLPPR 346 (402)
Q Consensus 299 ~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~P~--~l~------~~~~~~l~~~l~~~ 346 (402)
+++|+|+|||..+ ...+|||||+|+|.||+ .|+ ++++++|++|+...
T Consensus 317 ~i~i~G~G~p~~~-~~~~GDL~V~~~V~~P~~~~ls~~~~~~~~~~~~~~~l~~~~ 371 (382)
T PRK14291 317 KIRVPGKGMPRLK-GSGYGDLVVRVHIDVPKISMLSKLMGDGKKAKKLLKELDKLL 371 (382)
T ss_pred EEEECCCCCCCCC-CCCCCCEEEEEEEEeCCCcCcCccccCCHHHHHHHHHHHhhc
Confidence 9999999999764 33689999999999998 499 99999998887543
No 29
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.9e-77 Score=595.22 Aligned_cols=334 Identities=32% Similarity=0.645 Sum_probs=295.7
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhhCCccccccccccccccccccCC-C--CCCCC
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG-G--GGGAH 75 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~---~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~~-~--~~~~~ 75 (402)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||.+|++||+||+++..+..+ + ++.++
T Consensus 6 ~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~~~~~~ 85 (371)
T PRK14292 6 ELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFGGMGF 85 (371)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCcccCccCC
Confidence 68999999999999999999999999999985 389999999999999999999999999876422111 1 11124
Q ss_pred CCcccccccccCCCCCCCCCCCccccCCcceeeccccccccccccccceecceeeeecCCccCCCcccCc--eeeCCCCc
Q 015690 76 DPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA--SMKCSGCQ 153 (402)
Q Consensus 76 d~~diF~~~Fgg~~~gg~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~--~~~C~~C~ 153 (402)
|+.|+|++|||+++++++ ...+++.++.|+.+.+.|||+|+|+|+++++.+++.+.|+.|+|+|..... ..+|+.|+
T Consensus 86 d~~d~f~~~fg~~~~~~~-~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~ 164 (371)
T PRK14292 86 DPMDIFEQLFGGAGFGGG-RGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCR 164 (371)
T ss_pred ChHHHHHHhhCCCCcCCC-CCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCC
Confidence 667899999985322211 111234678999999999999999999999999999999999999987654 47899999
Q ss_pred CCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEEecCCCcCCCCCC
Q 015690 154 GSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDT 233 (402)
Q Consensus 154 G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~geG~~~~g~ 233 (402)
|+|+++..+++.+|++++ +.+|+.|+|.|..+. ..|+.|+|++++...+.++|.||+|+++|++|+|+|+|++.++.
T Consensus 165 G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~~~ 241 (371)
T PRK14292 165 GAGAVRAQARTIFGVVET-QQPCPTCRGEGQIIT--DPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGPGG 241 (371)
T ss_pred CccEEEEEEeccCceEEE-eeecCCCcccceecC--CCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCCCCC
Confidence 999999999998998865 789999999999976 99999999999999999999999999999999999999997766
Q ss_pred CCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceEEecCCCCCCCCCC
Q 015690 234 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRP 313 (402)
Q Consensus 234 ~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~~i~g~Gmp~~~~~ 313 (402)
. |||||+|++++|+.|+|+|+||++++.|+|++||+|+++.|+||||+. .|.||+| +++|++++|+|+|||..++
T Consensus 242 ~-GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~-~v~ip~g--~~~g~~~~i~g~G~p~~~~- 316 (371)
T PRK14292 242 N-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQ-VIEVKPG--TQHGDLHRLRGQGMPRLQG- 316 (371)
T ss_pred C-CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCE-EEecCCC--cCCCcEEEECCCCCCCCCC-
Confidence 5 999999999999999999999999999999999999999999999984 7899998 7999999999999997643
Q ss_pred CCCCcEEEEEEEeCCCCCCHHHHHHHHhhCC
Q 015690 314 FMRGKLYIHFTVDFPESLSPDQCKMLETVLP 344 (402)
Q Consensus 314 ~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~ 344 (402)
..+|||||+|+|.||+.|+++|+++|++++.
T Consensus 317 ~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~ 347 (371)
T PRK14292 317 AGTGDLIVEYEIAVPKQLSPEAREALEAYAR 347 (371)
T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999999999984
No 30
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.1e-76 Score=594.33 Aligned_cols=337 Identities=34% Similarity=0.662 Sum_probs=293.2
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhhCCccccccccccccccccccCC-CC--CCC
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG-GG--GGA 74 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~----~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~~-~~--~~~ 74 (402)
++|||+++||.+|||+|||+||++||||+|++ .++|++|++||+||+||++|++||+||+++++++.+ ++ +++
T Consensus 9 ~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~~~~~~~ 88 (386)
T PRK14289 9 EVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGGGFSGEG 88 (386)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCCCCCCCC
Confidence 68999999999999999999999999999974 389999999999999999999999999987763211 11 112
Q ss_pred CCCccccccc---ccCC--CCCC----C-CCCCccccCCcceeeccccccccccccccceecceeeeecCCccCCCcccC
Q 015690 75 HDPFDIFQSF---FGGS--PFGG----G-SSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSG 144 (402)
Q Consensus 75 ~d~~diF~~~---Fgg~--~~gg----~-~~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~ 144 (402)
+++.++|+.| |++. ++++ + +.....+.++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|....
T Consensus 89 ~~~~~~f~~f~~~fg~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~ 168 (386)
T PRK14289 89 MSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGN 168 (386)
T ss_pred cChhhhhHHhhhhhcccccCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCCCCCCCCC
Confidence 2334444332 5421 1100 0 011123457899999999999999999999999999999999999999865
Q ss_pred c-eeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEEec
Q 015690 145 A-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITF 223 (402)
Q Consensus 145 ~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~ 223 (402)
. ..+|+.|+|+|+++..+++++|++++ +.+|+.|.|+|.++. ..|+.|+|++++.+.++++|+||+|+++|++|+|
T Consensus 169 ~~~~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l 245 (386)
T PRK14289 169 NGSETCPTCKGSGSVTRVQNTILGTMQT-QSTCPTCNGEGKIIK--KKCKKCGGEGIVYGEEVITVKIPAGVAEGMQLSM 245 (386)
T ss_pred CCCCcCCCCcCeEEEEEEEecccceEEE-EEecCCCCccccccC--cCCCCCCCCcEEeeeEEEEEEeCCCCCCCCEEEE
Confidence 5 47899999999999999999999864 999999999999986 8899999999999999999999999999999999
Q ss_pred CCCcCCC-CCCCCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceEEe
Q 015690 224 PGEADEA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAI 302 (402)
Q Consensus 224 ~geG~~~-~g~~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~~i 302 (402)
+|+|++. ++..+|||||+|++++|+.|+|+++||++++.|+|.+||+|+++.|+||||+ +.|.||+| +++|++++|
T Consensus 246 ~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g--~~~g~~~ri 322 (386)
T PRK14289 246 NGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGK-AKVKIEAG--TQPGKVLRL 322 (386)
T ss_pred eccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCce-EEEEECCc--cCCCcEEEE
Confidence 9999985 4678999999999999999999999999999999999999999999999997 89999998 799999999
Q ss_pred cCCCCCCCCCCCCCCcEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015690 303 NDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 345 (402)
Q Consensus 303 ~g~Gmp~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 345 (402)
+|+|||..++ ..+|||||+|+|.||+.|+++|+++|++|+..
T Consensus 323 ~g~G~p~~~~-~~~GDL~v~~~v~~P~~l~~~q~~~l~~l~~~ 364 (386)
T PRK14289 323 RNKGLPSVNG-YGTGDLLVNVSVYIPETLSKEEKQTLEKMENS 364 (386)
T ss_pred CCCCcCCCCC-CCCCcEEEEEEEEeCCCCCHHHHHHHHHHHhh
Confidence 9999997543 46899999999999999999999999999974
No 31
>PRK14299 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-60 Score=462.63 Aligned_cols=258 Identities=36% Similarity=0.613 Sum_probs=219.1
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhhCCccccccccccccccccccCC------CC-
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG------GG- 71 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~---~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~~------~~- 71 (402)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||+||+.||+||++++..++. ++
T Consensus 8 ~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~~~~~~~ 87 (291)
T PRK14299 8 AILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPPGPPGG 87 (291)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCCCCCCCC
Confidence 68999999999999999999999999999975 389999999999999999999999999875432110 01
Q ss_pred CC-----CCCCcccccccccCC-CCCCCC----CCCccccCCcceeeccccccccccccccceecceeeeecCCccCCCc
Q 015690 72 GG-----AHDPFDIFQSFFGGS-PFGGGS----SRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGS 141 (402)
Q Consensus 72 ~~-----~~d~~diF~~~Fgg~-~~gg~~----~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~ 141 (402)
++ ..++.|+|++|||++ ++++.+ .....++++.|+.+.+.|||+|+|.|+++++.+.
T Consensus 88 ~~~~~~~~~~~~d~f~~~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~------------- 154 (291)
T PRK14299 88 GDFSGFNVGDFSDFFQQLFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVVEVA------------- 154 (291)
T ss_pred CCccccCcCCHHHHHHHHhCCCCCCCCcccccccccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC-------------
Confidence 11 124457899999752 111110 0012346789999999999999999998875331
Q ss_pred ccCceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEE
Q 015690 142 KSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKI 221 (402)
Q Consensus 142 ~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i 221 (402)
.+.++|+||+|+++|++|
T Consensus 155 --------------------------------------------------------------g~~~~V~Ip~G~~~G~~i 172 (291)
T PRK14299 155 --------------------------------------------------------------GERLSVRIPPGVREGQVI 172 (291)
T ss_pred --------------------------------------------------------------CEEEEEecCCCcCCCcEE
Confidence 146789999999999999
Q ss_pred ecCCCcCCCCCCCCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceEE
Q 015690 222 TFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKA 301 (402)
Q Consensus 222 ~~~geG~~~~g~~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~~ 301 (402)
+|+|+|++. |||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|+||++ +++|++++
T Consensus 173 r~~g~G~~~-----GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-~~v~ip~~--~~~g~~~r 244 (291)
T PRK14299 173 RLAGKGRQG-----GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGP-VEVTIPPR--TQAGRKLR 244 (291)
T ss_pred EECCCCCCC-----CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCC-EEEEeCCC--cCCCCEEE
Confidence 999999863 99999999999999999999999999999999999999999999997 88999988 79999999
Q ss_pred ecCCCCCCCCCCCCCCcEEEEEEEeCCCCCCHHHHHHHHhhCC
Q 015690 302 INDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 344 (402)
Q Consensus 302 i~g~Gmp~~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~ 344 (402)
|+|+|||.. ++.+|||||+|+|.||+.|+++++++|++++.
T Consensus 245 l~g~G~p~~--~~~~GDL~v~~~V~~P~~l~~~~~~~l~~l~~ 285 (291)
T PRK14299 245 LKGKGWPRG--PAGRGDQYAEVRITIPTRPTPEEERLYKQLAE 285 (291)
T ss_pred ECCCCCCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 999999963 34689999999999999999999999999974
No 32
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=100.00 E-value=7.6e-59 Score=453.51 Aligned_cols=274 Identities=29% Similarity=0.444 Sum_probs=227.4
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhhCCccccccccccccc----ccccc--CCCC-
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGED----ALKEG--MGGG- 71 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~---~~kFk~i~~AYevLsd~~kR~~YD~~G~~----~~~~g--~~~~- 71 (402)
+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+||+||.||+.||+||.. ++.+. ++++
T Consensus 8 ~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~~~~~~~ 87 (306)
T PRK10266 8 AIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQHGDGQ 87 (306)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCcccccccccCCCC
Confidence 58999999999999999999999999999974 48999999999999999999999999864 22211 0111
Q ss_pred -CCCCCCcccccccccCCCCCCCCCCCccccCCcceeeccccccccccccccceecceeeeecCCccCCCcccCceeeCC
Q 015690 72 -GGAHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCS 150 (402)
Q Consensus 72 -~~~~d~~diF~~~Fgg~~~gg~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~~~C~ 150 (402)
.+..++.++|+.|||+++ + ..+...++++.|+.+++.|||+|+|+|+.+.+.+++.+ |
T Consensus 88 ~~~~~~~~~~f~~~~g~~~--~-~~~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~----~-------------- 146 (306)
T PRK10266 88 SFNAEDFDDIFSSIFGQHA--R-QSRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPV----Y-------------- 146 (306)
T ss_pred CCCCCCHHHHHHHHhCCCC--C-CCCCCCCCCCCceEEEEEEEHHHhcCCceEEEEEeccc----c--------------
Confidence 112345688898887421 1 11122345789999999999999999999988776532 2
Q ss_pred CCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEEecCCCcCCC
Q 015690 151 GCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA 230 (402)
Q Consensus 151 ~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~geG~~~ 230 (402)
.|.|. +++ ...++++|+||+|+++|++|+|+|+|++.
T Consensus 147 --~g~G~-----------~~~------------------------------~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~ 183 (306)
T PRK10266 147 --NAFGM-----------IEQ------------------------------EIPKTLNVKIPAGVGNGQRIRLKGQGTPG 183 (306)
T ss_pred --cCCCe-----------EEE------------------------------eeeEEEEEEECCCCcCCcEEEEecCCcCC
Confidence 22231 100 12367999999999999999999999985
Q ss_pred C-CCCCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceEEecCCCCCC
Q 015690 231 P-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPM 309 (402)
Q Consensus 231 ~-g~~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~~i~g~Gmp~ 309 (402)
+ +..+|||||+|+++||+.|+|+|+||++++.|||++||+|+++.|+|+||+ +.|+||++ +++|++++|+|+|||.
T Consensus 184 ~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~-v~v~ip~g--~~~g~~~ri~g~G~p~ 260 (306)
T PRK10266 184 ENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKES-ILLTIPPG--SQAGQRLRVKGKGLVS 260 (306)
T ss_pred CCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCcc-EEEEeCCC--cCCCCEEEECCCCCCC
Confidence 4 567899999999999999999999999999999999999999999999998 89999998 6999999999999996
Q ss_pred CCCCCCCCcEEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 015690 310 YQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 345 (402)
Q Consensus 310 ~~~~~~~GdL~i~~~V~~P~~l~~~~~~~l~~~l~~ 345 (402)
. ..+|||||+|+|.||+.|+++|+++|++|+..
T Consensus 261 ~---~~~GdL~v~~~v~~P~~l~~~q~~l~~~l~~~ 293 (306)
T PRK10266 261 K---KQTGDLYAVLKIVMPPKPDEKTAALWQQLADA 293 (306)
T ss_pred C---CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4 24899999999999999999999999999864
No 33
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-48 Score=367.62 Aligned_cols=300 Identities=41% Similarity=0.687 Sum_probs=239.5
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-H---HHHHHHHHHHHhhCCccccccccccccccccccC--CCCCCCC
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD-P---EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGM--GGGGGAH 75 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~-~---~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~--~~~~~~~ 75 (402)
+||||+++||..|||+||||||+||||||||+ + ++|++|+.||||||||+||+.||+||++++.... +.++++
T Consensus 20 elLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~~~~g~~- 98 (336)
T KOG0713|consen 20 ELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKDGEGGGG- 98 (336)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccccccccCCc-
Confidence 68999999999999999999999999999996 2 8999999999999999999999999999998421 111111
Q ss_pred CCcccccccccCCCC--CCCCCCCccccCCcceeeccccccccccccccceecceeeeecCCccCCCcccCceeeCCCCc
Q 015690 76 DPFDIFQSFFGGSPF--GGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQ 153 (402)
Q Consensus 76 d~~diF~~~Fgg~~~--gg~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~~~C~~C~ 153 (402)
-.++|+.||+..++ +|.. ......+|.++...++.+++++|.|........+.+.|.. .|+ . .| +
T Consensus 99 -~~~~f~~~f~dfg~~~~g~~-~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~-~g~--~-----~~---~ 165 (336)
T KOG0713|consen 99 -GNDIFSAFFGDFGVTVGGNP-LEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPA-PGT--R-----KC---N 165 (336)
T ss_pred -ccchHHHhhcccccccCCCc-ccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceeec-Ccc--c-----cc---C
Confidence 14677777763222 2211 1233578899999999999999999987766666555431 111 1 11 1
Q ss_pred CCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEEecCCCcCCCCCC
Q 015690 154 GSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDT 233 (402)
Q Consensus 154 G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~geG~~~~g~ 233 (402)
-+ ..+..++.+||+++.++ ...|..|.+.+...+...+++.+..|+..+....+..+|.+.--+
T Consensus 166 ~~-~~~~~~~~~~g~~~~~q---------------~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 229 (336)
T KOG0713|consen 166 CR-LEMFTQQEGPGRFQMLQ---------------EAVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFELEGEPHIDG 229 (336)
T ss_pred Ch-hhheeeccCCChhhhhh---------------hhhhccCCccceeecCCceeeeeeecccCCceeeeeccCCcceec
Confidence 11 12344555666655544 256777777888899999999999999999999999999887778
Q ss_pred CCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceEEecCCCCCCCCCC
Q 015690 234 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRP 313 (402)
Q Consensus 234 ~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~~i~g~Gmp~~~~~ 313 (402)
.+||+++.+..-+|+.|.|+++||++++.|+|.++|.|+...+.++|+..+.++... +..|+..++..++|||..++.
T Consensus 230 ~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~~--~~~p~~~~~~~~~~~~~l~~~ 307 (336)
T KOG0713|consen 230 VPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRKK--ITWPGARTRKKGEGMPLLKNR 307 (336)
T ss_pred ccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhhh--ccccchhhhhhhccchhhhcc
Confidence 899999999999999999999999999999999999999999999999876665443 358899999999999987777
Q ss_pred CCCCcEEEEEEEeCCCC-CCH
Q 015690 314 FMRGKLYIHFTVDFPES-LSP 333 (402)
Q Consensus 314 ~~~GdL~i~~~V~~P~~-l~~ 333 (402)
...|++|+.|.+.||.+ ++.
T Consensus 308 ~~~~~~~~t~~~~~~~~~~~~ 328 (336)
T KOG0713|consen 308 NEKGNLYVTFDVEFPKSSLSD 328 (336)
T ss_pred chhcceeEEecccCcccccch
Confidence 78999999999999966 555
No 34
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=100.00 E-value=2.9e-41 Score=348.39 Aligned_cols=124 Identities=19% Similarity=0.219 Sum_probs=113.4
Q ss_pred CccEEEEcEEEEEEecCCCcCCCEEecCCCcCCCCCCCCccEEEEEEEecCCCccccCCceeeeeccCHHHHhcCCEEEE
Q 015690 197 GEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVI 276 (402)
Q Consensus 197 G~g~~~~~~~l~V~Ip~G~~~G~~i~~~geG~~~~g~~~GDliv~i~v~~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i 276 (402)
|...+.+.++++|+||+|+++|++|+|+|+|++.+++. |||||+|++++|+.|+|+|+|||+++.|+|.+||+|+++.|
T Consensus 689 G~ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpgg~-GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EALLGgtIeI 767 (871)
T TIGR03835 689 TESTTNEAITLEIQLPITSQLNISAIFKGFGHDFGNGC-GDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGGIIDV 767 (871)
T ss_pred CcceeeeeEEEEEecCCCCCCCCEEEeccccCCCCCCC-CCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHhcCCEEEe
Confidence 33456677899999999999999999999999876664 99999999999999999999999999999999999999999
Q ss_pred eccCCcEEEEEeCCCccccCCceEEecCCCCCCCCCCCCCCcEEEEEEEe
Q 015690 277 THLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVD 326 (402)
Q Consensus 277 ~tldG~~l~v~i~~g~vi~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~ 326 (402)
+||||+ +.|+||++ ++||++++|+|+|||.. ++.||||||+|+|.
T Consensus 768 pTLDGr-VkLkIPpg--TqpGqvLRIkGKGMP~~--~~~RGDLyV~f~V~ 812 (871)
T TIGR03835 768 FGPNKL-FNVRIPGG--IKVNDQVIFKDLGLTKT--KYDKGSLIVHLYYS 812 (871)
T ss_pred eCCCCC-EEEeeCCC--CCCCcEEEECCCCCCCC--CCCCCCEEEEEEEe
Confidence 999997 88999988 79999999999999953 34689999999985
No 35
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-40 Score=318.48 Aligned_cols=238 Identities=31% Similarity=0.629 Sum_probs=204.9
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhhCCccccccccccccccccccCCCCCCCCCCc
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAHDPF 78 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~---~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~~~~~~~~d~~ 78 (402)
+||||+++||..|||+||++||++||||.|.+ .++|++|++|||||+|++||+.||++|..+.. +...+++
T Consensus 47 ~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~~------~~~g~~~ 120 (288)
T KOG0715|consen 47 KVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQHG------EFGGNPF 120 (288)
T ss_pred hhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhccc------cccCCcc
Confidence 68999999999999999999999999999986 38999999999999999999999999986511 1123788
Q ss_pred ccccccccCCCCCCCCCCCccccCCcceeeccccccccccccccceecceeeeecCCccCCCcccCce-eeCCCCcCCce
Q 015690 79 DIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQGSGM 157 (402)
Q Consensus 79 diF~~~Fgg~~~gg~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G~G~ 157 (402)
++|..+|++. ......+.+..+.+.++|+++-.|..+.+.+.....|.+|.|.|...+.. ..|..|.|.|.
T Consensus 121 ~~~~~~~~~~--------~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 192 (288)
T KOG0715|consen 121 DVFLEFFGGK--------MNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCSGRGL 192 (288)
T ss_pred chHHHhhccc--------ccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCcccccccccchhhhCccc
Confidence 8999988730 11123455777789999999999999999999999999999999877664 68999999996
Q ss_pred EEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEEecCCCcCCCCCCCCcc
Q 015690 158 KVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGD 237 (402)
Q Consensus 158 ~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~geG~~~~g~~~GD 237 (402)
+.......+.+ . +|..|.|.|.+.. +.|..|.|.+.+...+.+.|.||+|+.++.+|++.+.+.. |
T Consensus 193 ~~~~~~~~f~~----~-~~~~c~~~~~~~~--~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~~-------~ 258 (288)
T KOG0715|consen 193 VSNPKEDPFIL----Y-TCSYCLGRGLVLR--DNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGND-------D 258 (288)
T ss_pred ccccccCCcce----e-ecccccccceecc--chHHHhhcchhhhhheeEEeecCcccccccEEEEecCCcc-------e
Confidence 65544444422 2 9999999999987 4599999999999999999999999999999999998863 9
Q ss_pred EEEEEEEecCCCccccCCceeeeeccCHHH
Q 015690 238 IVFVLQQKEHPKFKRKGDDLFVEHTLSLTE 267 (402)
Q Consensus 238 liv~i~v~~h~~f~R~g~dL~~~~~I~l~e 267 (402)
|+|.|.|.+++.|.|+|.|+++++.|++.+
T Consensus 259 l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~ 288 (288)
T KOG0715|consen 259 LFVRLIVAKSPSFRREGKDILYDAIISFTQ 288 (288)
T ss_pred EEEEEEeccCcccccccCcccccccccccC
Confidence 999999999999999999999999998753
No 36
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3e-25 Score=214.12 Aligned_cols=245 Identities=44% Similarity=0.745 Sum_probs=180.2
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHhhCCccccccccccccccccccCC-CC---C
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP-----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG-GG---G 72 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~~-----~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~~-~~---~ 72 (402)
+||+|.++|+.+||++|||+||++||||+|+.+ .+|++|++||+||||+.+|++||+||++++.+... .. .
T Consensus 7 ~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~~~~~~~ 86 (306)
T KOG0714|consen 7 KILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSFSSSFTS 86 (306)
T ss_pred HHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCCCCCCCC
Confidence 689999999999999999999999999998753 57999999999999999999999999977664111 00 0
Q ss_pred -----CCCCCcccccccccCC-CCCCC--------------------------CC-C---------CccccCCcceeecc
Q 015690 73 -----GAHDPFDIFQSFFGGS-PFGGG--------------------------SS-R---------GRRQRRGEDVIHPL 110 (402)
Q Consensus 73 -----~~~d~~diF~~~Fgg~-~~gg~--------------------------~~-~---------~~~~~~g~d~~~~l 110 (402)
...++.++|..|||.. .+... .. . ....+....+.+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (306)
T KOG0714|consen 87 ELFYFLFRKPDKDFYEFFGVSSPFSGSKKGYRDKNAAPGEEAFKSEGKAFQSLYGPKRKQYDSSGSDRSARQSPPVEHPL 166 (306)
T ss_pred CcceeccCchhhhHHHHhCCCCCCccccccCCccccccCccccccccccccccCCCcccccccccccccccCCCCccCCc
Confidence 1122345566666521 11000 00 0 00011112233444
Q ss_pred ccccccccccccceecceeeeecCCccCCCcccCceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCC
Q 015690 111 KVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 190 (402)
Q Consensus 111 ~vslee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~ 190 (402)
.+++++++.|...+..+.+... ... +.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~------~~------ 193 (306)
T KOG0714|consen 167 RVSLEDLYKGESKKMKISRQSF-----------------------------------------TSN------GR------ 193 (306)
T ss_pred ceeHHHhccccceeeecccccc-----------------------------------------cCC------cc------
Confidence 4466666666666655443221 000 00
Q ss_pred CCCccCCccEEEEcEEEEEEecCCCcCCCEEecCCCcCCCCCCCCccEEEEEEEecCCCccccCCceeee--eccCHHHH
Q 015690 191 RCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVE--HTLSLTEA 268 (402)
Q Consensus 191 ~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~geG~~~~g~~~GDliv~i~v~~h~~f~R~g~dL~~~--~~I~l~eA 268 (402)
........+.+.+.+++..|+.+.+..+|+..++..+-++++.+..++|..|.|.+.+|... ..|++.+|
T Consensus 194 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~ 265 (306)
T KOG0714|consen 194 --------EGSSRSRYLSISIKPGWKEGTKITFPEEGDEEPGILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEISLKEA 265 (306)
T ss_pred --------cccCccceeEEeccCCcccccceeccccccccCCcCcceeEEEEecCCcccccCCCccceecccceeehhhh
Confidence 01234577899999999999999999999988888899999999999999999999999999 99999999
Q ss_pred hcCCEEEEeccCCcEEEEEeCCC-ccccCCceEEecCCCCCC
Q 015690 269 LCGFQFVITHLDGRQLLIKSQPG-EVVKPDQFKAINDEGMPM 309 (402)
Q Consensus 269 l~G~~~~i~tldG~~l~v~i~~g-~vi~~g~~~~i~g~Gmp~ 309 (402)
++|....+++++++.+.+ +.. .++.++...+++++|||.
T Consensus 266 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 305 (306)
T KOG0714|consen 266 LLGVTVFVPTLDGRSYSL--SINKDLIEPGEEDVIPGEGLPC 305 (306)
T ss_pred hcCcceeeecccCccccC--cccccccCCCceeeecCCCCCC
Confidence 999999999999986554 444 678999999999999985
No 37
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=99.86 E-value=4.9e-22 Score=156.65 Aligned_cols=81 Identities=41% Similarity=0.657 Sum_probs=70.3
Q ss_pred ceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceEEecCCCCCCCCCCCCCCcEEEEEEEeCCCCCCHHH
Q 015690 256 DLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQ 335 (402)
Q Consensus 256 dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~P~~l~~~~ 335 (402)
||+++++|||++|++|+++.|+||||+.+.|++|++ +++|+.++|+|+|||.+.+++.+|||||+|+|.||++||++|
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~--~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~q 78 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPG--TQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQ 78 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST---STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHH
T ss_pred CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCc--cCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHH
Confidence 899999999999999999999999999999999998 799999999999999987766899999999999999999999
Q ss_pred HHH
Q 015690 336 CKM 338 (402)
Q Consensus 336 ~~~ 338 (402)
+++
T Consensus 79 k~l 81 (81)
T PF01556_consen 79 KEL 81 (81)
T ss_dssp HHH
T ss_pred hcC
Confidence 874
No 38
>PHA03102 Small T antigen; Reviewed
Probab=99.81 E-value=1.7e-20 Score=163.54 Aligned_cols=81 Identities=31% Similarity=0.407 Sum_probs=71.5
Q ss_pred CcccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhCCccccccccccccccccccCCCCCCCCCCc
Q 015690 1 MRFSESRKNA--SQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAHDPF 78 (402)
Q Consensus 1 ~~iLgv~~~A--s~~eIkkAYrklA~k~HPDkn~~~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~~~~~~~~d~~ 78 (402)
|+||||+++| |.+|||+|||++|++||||+++++++|++|++||++|+|+.+|..||.+|....... ...+.
T Consensus 8 ~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~------~~~~~ 81 (153)
T PHA03102 8 MDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEE------EDVPS 81 (153)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhccccccCCcccccc------cccHH
Confidence 5799999999 999999999999999999999999999999999999999999999999998655431 12367
Q ss_pred ccccccccC
Q 015690 79 DIFQSFFGG 87 (402)
Q Consensus 79 diF~~~Fgg 87 (402)
++|++.||+
T Consensus 82 ~~f~~~fg~ 90 (153)
T PHA03102 82 GYVGATFGD 90 (153)
T ss_pred HHhhhhcCC
Confidence 888888874
No 39
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.1e-20 Score=173.36 Aligned_cols=64 Identities=58% Similarity=0.968 Sum_probs=60.7
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-H---HHHHHHHHHHHhhCCcccccccccccccccc
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD-P---EKFKELAQAYEVLSDPEKREIYDQYGEDALK 65 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~-~---~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~ 65 (402)
+|||++++||.++||||||+||++||||++++ + +||++||.||+|||||.||.+||.||+.++.
T Consensus 35 dVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 35 DVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred HHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 68999999999999999999999999999986 3 8999999999999999999999999988775
No 40
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.78 E-value=8e-20 Score=193.94 Aligned_cols=65 Identities=29% Similarity=0.512 Sum_probs=61.1
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhhCCccccccccccccccccc
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKE 66 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~---~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~ 66 (402)
+||||+++||.+|||+|||+||++||||+|++ .++|++|++||+|||||.+|+.||+||..|+..
T Consensus 577 dILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~ 644 (1136)
T PTZ00341 577 DILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG 644 (1136)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence 68999999999999999999999999999985 389999999999999999999999999987763
No 41
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.9e-19 Score=177.07 Aligned_cols=67 Identities=54% Similarity=0.901 Sum_probs=62.2
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHhhCCcccccccccccccccc-ccC
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP-------EKFKELAQAYEVLSDPEKREIYDQYGEDALK-EGM 68 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~~-------~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~-~g~ 68 (402)
.+|+|+++||.+|||+||||+++-|||||.-|+ ++|+.|.+||||||||++|++||.||+.|++ +|.
T Consensus 13 a~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t~gw 87 (546)
T KOG0718|consen 13 ALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKTEGW 87 (546)
T ss_pred HHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccccccCc
Confidence 379999999999999999999999999998653 7899999999999999999999999999998 554
No 42
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=7.3e-19 Score=168.51 Aligned_cols=81 Identities=43% Similarity=0.695 Sum_probs=70.7
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-H---HHHHHHHHHHHhhCCccccccccccccccccccCCCCCCCCCC
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD-P---EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAHDP 77 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~-~---~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~~~~~~~~d~ 77 (402)
+||||+.+||.+||+||||+.|++|||||||+ | ++|+++++||+||+|+.+|+.||.+|..+.... +..++
T Consensus 9 ~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~-----~~~d~ 83 (296)
T KOG0691|consen 9 DLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ-----GREDQ 83 (296)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch-----hhhhH
Confidence 68999999999999999999999999999996 3 899999999999999999999999997665421 33567
Q ss_pred cccccccccC
Q 015690 78 FDIFQSFFGG 87 (402)
Q Consensus 78 ~diF~~~Fgg 87 (402)
.++|...|++
T Consensus 84 ~~~~r~~f~~ 93 (296)
T KOG0691|consen 84 ADGFRKKFGS 93 (296)
T ss_pred HHHHHHHhhh
Confidence 7888888874
No 43
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.7e-18 Score=170.43 Aligned_cols=65 Identities=42% Similarity=0.707 Sum_probs=60.0
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHhhCCccccccccccccccccc
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP-----EKFKELAQAYEVLSDPEKREIYDQYGEDALKE 66 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~~-----~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~ 66 (402)
+||||.++|++.|||+|||||||+|||||||+. ++|+.|+.||+|||||..|+-||..-+.-|.+
T Consensus 12 E~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~ 81 (508)
T KOG0717|consen 12 EVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRG 81 (508)
T ss_pred HHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcC
Confidence 699999999999999999999999999999972 79999999999999999999999987765553
No 44
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.4e-17 Score=160.73 Aligned_cols=213 Identities=24% Similarity=0.454 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhCCccccccccccccccccccCCC-CCCCCCCc-ccccccccCCCC
Q 015690 13 DDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-GGGAHDPF-DIFQSFFGGSPF 90 (402)
Q Consensus 13 ~eIkkAYrklA~k~HPDkn~~~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~~~-~~~~~d~~-diF~~~Fgg~~~ 90 (402)
.||++||--|+ |++| .+||+-...+... .-|..++ |+++ ++++.|.| +||..-.++...
T Consensus 48 KEI~eAYEVLs---------D~eK----Ra~YD~fG~~~~~----~gg~gg~--g~~~fgg~~~DIF~~~FgGg~~~~~~ 108 (371)
T COG0484 48 KEINEAYEVLS---------DPEK----RAAYDQFGHAGFK----AGGFGGF--GFGGFGGDFGDIFEDFFGGGGGGRRR 108 (371)
T ss_pred HHHHHHHHHhC---------CHHH----HHHhhccCccccc----cCCcCCC--CcCCCCCCHHHHHHHhhcCCCcccCC
Confidence 37999998885 4555 3489877655443 2222222 2221 22555654 678543321111
Q ss_pred CCCCCCCc-----------cccCCcceeeccccccc---cccccccceecceeeeecCCccCCCcccC--------ceee
Q 015690 91 GGGSSRGR-----------RQRRGEDVIHPLKVSLE---DLYNGTSKKLSLSRNVICTKCKGKGSKSG--------ASMK 148 (402)
Q Consensus 91 gg~~~~~~-----------~~~~g~d~~~~l~vsle---e~~~G~~~~~~~~r~~~C~~C~G~G~~~~--------~~~~ 148 (402)
..+.++.. ....|... ++.++.. +.|.|+..+ .-+..++|++|+|+|.... ..++
T Consensus 109 ~~~~~rG~Dl~~~l~isleEa~~G~~~--~i~~~~~~~C~~C~GsGak-~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~ 185 (371)
T COG0484 109 PNRPRRGADLRYNLEITLEEAVFGVKK--EIRVTRSVTCSTCHGSGAK-PGTDPKTCPTCNGSGQVRTVQRTGFFSFQQT 185 (371)
T ss_pred CCCcccCCceEEEEEeEhhhhccCcee--eEecceeeECCcCCCCCCC-CCCCCCcCCCCCCcCeEEEEEeeeEEEEEEE
Confidence 11111110 11223332 3334433 677888776 5557789999999997432 1278
Q ss_pred CCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCC-----CCCccCCc-------------------------
Q 015690 149 CSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD-----RCPQCKGE------------------------- 198 (402)
Q Consensus 149 C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~-----~C~~C~G~------------------------- 198 (402)
|+.|+|+|. .+..+|+.|+|.|.+...+. +--...|.
T Consensus 186 C~~C~G~G~-------------~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~Ggp~GDLyv~i~ 252 (371)
T COG0484 186 CPTCNGTGK-------------IIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYVFVH 252 (371)
T ss_pred CCCCcccee-------------ECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCCCCCCCccEEEEEE
Confidence 999999993 45789999999998643111 00111111
Q ss_pred -------------------------------cEEEEcEEEEEEecCCCcCCCEEecCCCcCC-CCCCCCccEEEEEEEec
Q 015690 199 -------------------------------KVIQEKKVLEVIVEKGMQNGQKITFPGEADE-APDTVTGDIVFVLQQKE 246 (402)
Q Consensus 199 -------------------------------g~~~~~~~l~V~Ip~G~~~G~~i~~~geG~~-~~g~~~GDliv~i~v~~ 246 (402)
.+.+....++|+||+|+++|+.|+|+|+|++ ..+...|||||+|.|..
T Consensus 253 v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~~rl~gkG~p~~~~~~~GDl~v~v~v~~ 332 (371)
T COG0484 253 VKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYVRVKVET 332 (371)
T ss_pred eecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcEEEEcCCCccccCCCCcCCEEEEEEEEc
Confidence 1111123489999999999999999999999 45666799999999999
Q ss_pred CCCccccCCceeee
Q 015690 247 HPKFKRKGDDLFVE 260 (402)
Q Consensus 247 h~~f~R~g~dL~~~ 260 (402)
++.+......|+-+
T Consensus 333 P~~ls~~q~~lL~~ 346 (371)
T COG0484 333 PKNLSDEQKELLEE 346 (371)
T ss_pred CCCCCHHHHHHHHH
Confidence 98877666555443
No 45
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=6.3e-17 Score=149.24 Aligned_cols=59 Identities=54% Similarity=0.888 Sum_probs=55.8
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-H----HHHHHHHHHHHhhCCccccccccccc
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD-P----EKFKELAQAYEVLSDPEKREIYDQYG 60 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~-~----~kFk~i~~AYevLsd~~kR~~YD~~G 60 (402)
+||||+++||..|||+|||+||++||||+|++ + ++|++|++||+||||+.+|+.||+++
T Consensus 10 ~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 10 EILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 68999999999999999999999999999984 2 89999999999999999999999973
No 46
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.2e-17 Score=151.47 Aligned_cols=60 Identities=42% Similarity=0.780 Sum_probs=56.5
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH------HHHHHHHHHHHhhCCcccccccccccc
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP------EKFKELAQAYEVLSDPEKREIYDQYGE 61 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~~------~kFk~i~~AYevLsd~~kR~~YD~~G~ 61 (402)
+||||.++||+.||+|||||||++||||+|+.+ ++|+.++.||.||||+++|++||+.|.
T Consensus 18 evLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~ 83 (264)
T KOG0719|consen 18 EVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS 83 (264)
T ss_pred HHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence 589999999999999999999999999999742 799999999999999999999999885
No 47
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.67 E-value=2.3e-17 Score=123.90 Aligned_cols=57 Identities=44% Similarity=0.756 Sum_probs=53.6
Q ss_pred CcccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-H----HHHHHHHHHHHhhCCcccccccc
Q 015690 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGD-P----EKFKELAQAYEVLSDPEKREIYD 57 (402)
Q Consensus 1 ~~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~-~----~kFk~i~~AYevLsd~~kR~~YD 57 (402)
++||||+++||.++||+||++|+++||||+++. . +.|+.|++||++|+||.+|+.||
T Consensus 3 y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 3 YEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 379999999999999999999999999999764 3 79999999999999999999998
No 48
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.65 E-value=1.3e-16 Score=152.75 Aligned_cols=63 Identities=51% Similarity=0.751 Sum_probs=57.7
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHhhCCcccccccccccccccc
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP-------EKFKELAQAYEVLSDPEKREIYDQYGEDALK 65 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~~-------~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~ 65 (402)
+||||.++|+..||-|||||||.|||||.-.|+ .||-.|..|-||||||+||+.||+ |++.+.
T Consensus 398 KILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD 467 (504)
T KOG0624|consen 398 KILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLD 467 (504)
T ss_pred HHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCC
Confidence 589999999999999999999999999987763 589999999999999999999998 666664
No 49
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=1.2e-15 Score=153.35 Aligned_cols=132 Identities=20% Similarity=0.474 Sum_probs=92.2
Q ss_pred cccccccceecceeeeecCCccCCCcccC------ceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCC
Q 015690 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 189 (402)
Q Consensus 116 e~~~G~~~~~~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~ 189 (402)
..|.|.... .-.....|+.|+|+|.... ...+|+.|+|+|.+ +..+|+.|+|+|.+...+
T Consensus 146 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~-------------~~~~C~~C~G~g~v~~~~ 211 (371)
T PRK10767 146 DTCHGSGAK-PGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKI-------------IKDPCKKCHGQGRVEKEK 211 (371)
T ss_pred CCCCCcccC-CCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeE-------------CCCCCCCCCCCceEeeee
Confidence 346676654 2233468999999996531 23689999999943 357899999998763211
Q ss_pred ----------------------CCCCc--cCCccEEEE-------------------------------------cEEEE
Q 015690 190 ----------------------DRCPQ--CKGEKVIQE-------------------------------------KKVLE 208 (402)
Q Consensus 190 ----------------------~~C~~--C~G~g~~~~-------------------------------------~~~l~ 208 (402)
+.... =.|.-++.. ...++
T Consensus 212 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~ 291 (371)
T PRK10767 212 TLSVKIPAGVDTGDRIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVK 291 (371)
T ss_pred eEEEecCCCCCCCcEEEEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEE
Confidence 00000 001101110 22579
Q ss_pred EEecCCCcCCCEEecCCCcCCCC-CCCCccEEEEEEEecCCCccccCCceeeee
Q 015690 209 VIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEH 261 (402)
Q Consensus 209 V~Ip~G~~~G~~i~~~geG~~~~-g~~~GDliv~i~v~~h~~f~R~g~dL~~~~ 261 (402)
|.||+|+++|++++|+|+|.+.+ +...|||||+|+|..|+.|++++.+|+.++
T Consensus 292 v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l 345 (371)
T PRK10767 292 LKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEF 345 (371)
T ss_pred EEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999999854 446799999999999999999998887664
No 50
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.58 E-value=2.6e-15 Score=111.02 Aligned_cols=52 Identities=58% Similarity=0.846 Sum_probs=48.0
Q ss_pred CcccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHhhCCccc
Q 015690 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGD-----PEKFKELAQAYEVLSDPEK 52 (402)
Q Consensus 1 ~~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~-----~~kFk~i~~AYevLsd~~k 52 (402)
++||||+++||.++||+|||+|+++||||++++ .+.|++|++||++|+||.+
T Consensus 4 y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 4 YEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 379999999999999999999999999999983 3899999999999999864
No 51
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.4e-15 Score=137.06 Aligned_cols=63 Identities=38% Similarity=0.644 Sum_probs=58.6
Q ss_pred CcccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhhCCcccccccccccccc
Q 015690 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDA 63 (402)
Q Consensus 1 ~~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~----~~kFk~i~~AYevLsd~~kR~~YD~~G~~~ 63 (402)
++||||+++||++|||||||+|.+||||||+|+ ++.|..|+.||+.|+|+..|+.|..||+..
T Consensus 102 yEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PD 168 (230)
T KOG0721|consen 102 YEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPD 168 (230)
T ss_pred HHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCC
Confidence 479999999999999999999999999999865 478999999999999999999999999754
No 52
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=2.4e-14 Score=143.49 Aligned_cols=128 Identities=23% Similarity=0.523 Sum_probs=88.1
Q ss_pred cccccccceecceeeeecCCccCCCcccC------ceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCC
Q 015690 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 189 (402)
Q Consensus 116 e~~~G~~~~~~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~ 189 (402)
+.|.|...+-. ....|+.|+|+|.... ...+|+.|+|+|.+ +..+|+.|+|.|.+...+
T Consensus 144 ~~C~G~G~~~~--~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~-------------~~~~C~~C~G~g~v~~~~ 208 (369)
T PRK14288 144 ESCDGTGAKDK--ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKI-------------IKTPCQACKGKTYILKDE 208 (369)
T ss_pred CCCCCcccCCC--CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceE-------------ccccCccCCCcceEEEEE
Confidence 45677765532 4578999999996532 12689999999942 467899999998763200
Q ss_pred ----------------------CCCCcc-CCccEEEE-------------------------------------c-EEEE
Q 015690 190 ----------------------DRCPQC-KGEKVIQE-------------------------------------K-KVLE 208 (402)
Q Consensus 190 ----------------------~~C~~C-~G~g~~~~-------------------------------------~-~~l~ 208 (402)
+.=+.. .|.=++.. . ..++
T Consensus 209 ~l~V~IP~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~ 288 (369)
T PRK14288 209 EIDAIIPEGIDDQNRMVLKNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELE 288 (369)
T ss_pred EEEEecCCCCCCCCEEEEccCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEE
Confidence 000000 11101100 2 2589
Q ss_pred EEecCCCcCCCEEecCCCcCCCCCC-CCccEEEEEEEecCCCccccCCcee
Q 015690 209 VIVEKGMQNGQKITFPGEADEAPDT-VTGDIVFVLQQKEHPKFKRKGDDLF 258 (402)
Q Consensus 209 V~Ip~G~~~G~~i~~~geG~~~~g~-~~GDliv~i~v~~h~~f~R~g~dL~ 258 (402)
|+||+|+++|++++|+|+|++.++. ..|||||+|+|..|+.|+.+...|+
T Consensus 289 i~i~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l 339 (369)
T PRK14288 289 LKIPRNARDRQTFAFRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQELL 339 (369)
T ss_pred EEeCCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 9999999999999999999986553 4699999999999988776654443
No 53
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.55 E-value=1e-14 Score=110.30 Aligned_cols=65 Identities=43% Similarity=0.947 Sum_probs=52.9
Q ss_pred cCCccCCCcccCc-eeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCcc
Q 015690 133 CTKCKGKGSKSGA-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEK 199 (402)
Q Consensus 133 C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g 199 (402)
|+.|+|+|++... ..+|+.|+|+|+++..++ .|+++++++++|+.|+|+|++| ++++|+.|+|+|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~-~~~~~~~~~~~C~~C~G~G~~i-~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQ-TPGGVFQMQQTCPKCGGTGKII-EKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEE-SSSTTEEEEEE-TTTSSSSEE--TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEe-CCCeEEEEEEECCCCcceeeEE-CCCCCCCCCCcC
Confidence 8999999996554 589999999999999998 6678899999999999999999 779999999975
No 54
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.4e-15 Score=147.09 Aligned_cols=80 Identities=50% Similarity=0.862 Sum_probs=67.0
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHhhCCccccccccccccccccccCCCCCCCCC
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD-----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAHD 76 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~-----~~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~~g~~~~~~~~d 76 (402)
.||||+++||..||||||||+|+.||||+|.. +.+|+++-+||.+||||.||..||. |.. +...+++ +++++
T Consensus 377 kilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ds-g~d-le~~~~~-~a~~d 453 (486)
T KOG0550|consen 377 KILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDS-GQD-LEEVGSG-GAGFD 453 (486)
T ss_pred HHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccc-ccc-hhhhcCC-CcCcC
Confidence 58999999999999999999999999999864 3689999999999999999999997 322 2222222 26689
Q ss_pred Cccccccc
Q 015690 77 PFDIFQSF 84 (402)
Q Consensus 77 ~~diF~~~ 84 (402)
|+++|..|
T Consensus 454 p~~~~~a~ 461 (486)
T KOG0550|consen 454 PFNIFRAF 461 (486)
T ss_pred hhhhhhhc
Confidence 99998887
No 55
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.53 E-value=1.2e-14 Score=105.43 Aligned_cols=49 Identities=55% Similarity=0.807 Sum_probs=46.0
Q ss_pred CcccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhhCC
Q 015690 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSD 49 (402)
Q Consensus 1 ~~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~----~~kFk~i~~AYevLsd 49 (402)
++||||+++||.++||+|||+|+++||||++++ .+.|++|++||++|+|
T Consensus 3 y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 3 YDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 379999999999999999999999999999985 4899999999999987
No 56
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.46 E-value=7.7e-14 Score=115.71 Aligned_cols=47 Identities=23% Similarity=0.458 Sum_probs=45.3
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhC
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLS 48 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~~~kFk~i~~AYevLs 48 (402)
+||||+++||.+|||+|||+|+++||||++++++.|++|++|||+|.
T Consensus 69 ~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 69 KILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999888899999999999995
No 57
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=1.4e-13 Score=138.11 Aligned_cols=132 Identities=20% Similarity=0.329 Sum_probs=93.5
Q ss_pred cccccccceecceeeeecCCccCCCcccC----------ceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceE
Q 015690 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 185 (402)
Q Consensus 116 e~~~G~~~~~~~~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 185 (402)
..|+|+..+ .-.....|+.|+|+|.... ...+|+.|+|+|. .+..+|+.|+|+|.+
T Consensus 156 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~-------------~~~~~C~~C~G~g~v 221 (369)
T PRK14282 156 PHCGGTGVE-PGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGK-------------IPGEYCHECGGSGRI 221 (369)
T ss_pred CCCCccCCC-CCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcce-------------eCCCCCCCCCCceeE
Confidence 456777655 2334578999999997532 1268999999994 246789999999864
Q ss_pred EcC----------------------CCCCC--ccCCccEEEE--------------------------------------
Q 015690 186 IND----------------------KDRCP--QCKGEKVIQE-------------------------------------- 203 (402)
Q Consensus 186 ~~~----------------------~~~C~--~C~G~g~~~~-------------------------------------- 203 (402)
... -+... .-.|.=++..
T Consensus 222 ~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ld 301 (369)
T PRK14282 222 RRRVRTTVKIPAGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPE 301 (369)
T ss_pred EEEEEEEEEeCCCCCCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCC
Confidence 320 00000 0011100000
Q ss_pred cEEEEEEecCCCcCCCEEecCCCcCCCC-CCCCccEEEEEEEecCCCccccCCceeeee
Q 015690 204 KKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEH 261 (402)
Q Consensus 204 ~~~l~V~Ip~G~~~G~~i~~~geG~~~~-g~~~GDliv~i~v~~h~~f~R~g~dL~~~~ 261 (402)
.+.++|+||+|+++|++|+|+|+|++.+ +..+|||||+|++..|+.|++++.+|+.++
T Consensus 302 G~~i~v~Ip~g~~~g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~l 360 (369)
T PRK14282 302 GGTTMLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKEL 360 (369)
T ss_pred CcEEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 2368999999999999999999999853 456799999999999999999998887653
No 58
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=3.8e-14 Score=130.15 Aligned_cols=58 Identities=38% Similarity=0.661 Sum_probs=54.8
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHhhCCcccccccccc
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQY 59 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~~---~kFk~i~~AYevLsd~~kR~~YD~~ 59 (402)
++|||+++|+.+||+||||+||++||||+|+++ +.|+.|.+|||+|.|.+.|..||-+
T Consensus 37 dVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 37 DVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred HHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHH
Confidence 689999999999999999999999999999864 6799999999999999999999964
No 59
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=4.5e-13 Score=134.37 Aligned_cols=133 Identities=22% Similarity=0.449 Sum_probs=93.4
Q ss_pred cccccccceecceeeeecCCccCCCcccC------ceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCC
Q 015690 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 189 (402)
Q Consensus 116 e~~~G~~~~~~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~ 189 (402)
..|.|.... .-.....|+.|+|+|.... ...+|+.|+|+|. .+..+|+.|+|+|.+...+
T Consensus 148 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~-------------~~~~~C~~C~G~g~v~~~~ 213 (366)
T PRK14294 148 EECHGSGCE-PGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGK-------------VIVSPCKTCHGQGRVRVSK 213 (366)
T ss_pred CCCCCcccc-CCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCe-------------ecCcCCCCCCCceEeecce
Confidence 346676655 2233578999999997542 2368999999994 3467899999998764311
Q ss_pred CCCCc------------cC------------CccEEEE-------------------------------------cEEEE
Q 015690 190 DRCPQ------------CK------------GEKVIQE-------------------------------------KKVLE 208 (402)
Q Consensus 190 ~~C~~------------C~------------G~g~~~~-------------------------------------~~~l~ 208 (402)
..--. -. |.=++.. ...++
T Consensus 214 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~ 293 (366)
T PRK14294 214 TVQVKIPAGVDTGSRLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERE 293 (366)
T ss_pred eEEEecCCCCcCCcEEEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEE
Confidence 10000 00 1100000 23468
Q ss_pred EEecCCCcCCCEEecCCCcCCCCC-CCCccEEEEEEEecCCCccccCCceeeeec
Q 015690 209 VIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFVEHT 262 (402)
Q Consensus 209 V~Ip~G~~~G~~i~~~geG~~~~g-~~~GDliv~i~v~~h~~f~R~g~dL~~~~~ 262 (402)
|.||+|+++|++|+|+|+|++.++ ..+|||||+|+|..|+.|++++.+|+..+.
T Consensus 294 v~ip~g~~~g~~iri~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~ 348 (366)
T PRK14294 294 LKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTEFA 348 (366)
T ss_pred EEECCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999998553 468999999999999999999988876643
No 60
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=5e-13 Score=133.86 Aligned_cols=131 Identities=22% Similarity=0.474 Sum_probs=92.3
Q ss_pred cccccccceecceeeeecCCccCCCcccC------ceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCC
Q 015690 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 189 (402)
Q Consensus 116 e~~~G~~~~~~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~ 189 (402)
..|+|+..+ .-.....|+.|+|+|.... ...+|+.|+|+|.+ +..+|..|+|+|.+...+
T Consensus 150 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~-------------~~~~C~~C~G~g~v~~~~ 215 (365)
T PRK14285 150 ESCLGKKSE-KGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKI-------------ISNPCKSCKGKGSLKKKE 215 (365)
T ss_pred CCCCCcccC-CCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccc-------------cCCCCCCCCCCCEEeccE
Confidence 456777655 3344568999999996532 23689999999943 467899999998653210
Q ss_pred CCC----------------------Ccc--CCccEEEE--------------------------------------cEEE
Q 015690 190 DRC----------------------PQC--KGEKVIQE--------------------------------------KKVL 207 (402)
Q Consensus 190 ~~C----------------------~~C--~G~g~~~~--------------------------------------~~~l 207 (402)
..- +.- .|.=++.. .+.+
T Consensus 216 ~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v 295 (365)
T PRK14285 216 TIELKIPAGIDDNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKI 295 (365)
T ss_pred EEEEEECCCCCCCCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEE
Confidence 000 000 01101110 2368
Q ss_pred EEEecCCCcCCCEEecCCCcCCCCCC-CCccEEEEEEEecCCCccccCCceeee
Q 015690 208 EVIVEKGMQNGQKITFPGEADEAPDT-VTGDIVFVLQQKEHPKFKRKGDDLFVE 260 (402)
Q Consensus 208 ~V~Ip~G~~~G~~i~~~geG~~~~g~-~~GDliv~i~v~~h~~f~R~g~dL~~~ 260 (402)
+|+||+|+++|++|+|+|+|++.++. ..|||||+|++..|+.|++++..|+..
T Consensus 296 ~V~Ip~g~~~g~~irl~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~ 349 (365)
T PRK14285 296 KIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLLEN 349 (365)
T ss_pred EEEeCCCcCCCcEEEECCCCccCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999986544 469999999999999999988766544
No 61
>PHA02624 large T antigen; Provisional
Probab=99.40 E-value=1.8e-13 Score=141.68 Aligned_cols=56 Identities=34% Similarity=0.452 Sum_probs=54.3
Q ss_pred CcccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhCCccccccc
Q 015690 1 MRFSESRKNA--SQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIY 56 (402)
Q Consensus 1 ~~iLgv~~~A--s~~eIkkAYrklA~k~HPDkn~~~~kFk~i~~AYevLsd~~kR~~Y 56 (402)
+++|||+++| |.+|||+|||+||++||||+++++++|++|++||++|+|+.+|..|
T Consensus 14 yelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 14 MDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 4799999999 9999999999999999999999999999999999999999999998
No 62
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=4.6e-13 Score=134.25 Aligned_cols=131 Identities=21% Similarity=0.438 Sum_probs=94.0
Q ss_pred cccccccceecceeeeecCCccCCCcccC----------ceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceE
Q 015690 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 185 (402)
Q Consensus 116 e~~~G~~~~~~~~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 185 (402)
..|.|....-. ....|+.|+|+|.... ...+|+.|+|+|.+ +..+|+.|+|+|.+
T Consensus 153 ~~C~G~g~~~~--~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~-------------~~~~C~~C~G~g~v 217 (365)
T PRK14290 153 PDCSGTGAKNG--KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRI-------------PEEKCPRCNGTGTV 217 (365)
T ss_pred CCCccccCCCC--CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeE-------------ccCCCCCCCCceeE
Confidence 35677665532 4578999999996432 12689999999943 46789999999875
Q ss_pred EcC---------------------CCCCCcc-CCc-------------------------------------cEEEEcEE
Q 015690 186 IND---------------------KDRCPQC-KGE-------------------------------------KVIQEKKV 206 (402)
Q Consensus 186 ~~~---------------------~~~C~~C-~G~-------------------------------------g~~~~~~~ 206 (402)
... +-....- .|. .+......
T Consensus 218 ~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~ 297 (365)
T PRK14290 218 VVNEDISVKIPKGATDNLRLRVKGKGQSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREK 297 (365)
T ss_pred EEeeEEEEEECCCCCCCcEEEEccccCCCCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCce
Confidence 320 0001000 011 00011346
Q ss_pred EEEEecCCCcCCCEEecCCCcCCCCC-CCCccEEEEEEEecCCCccccCCceeeee
Q 015690 207 LEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFVEH 261 (402)
Q Consensus 207 l~V~Ip~G~~~G~~i~~~geG~~~~g-~~~GDliv~i~v~~h~~f~R~g~dL~~~~ 261 (402)
++|+||+|+++|++|+|+|+|++.++ ..+|||||+|+|..|+.|++++.+|+.++
T Consensus 298 i~V~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~ 353 (365)
T PRK14290 298 YNLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF 353 (365)
T ss_pred EEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999999998553 46899999999999999999999988764
No 63
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=4.7e-13 Score=134.54 Aligned_cols=132 Identities=21% Similarity=0.396 Sum_probs=92.5
Q ss_pred cccccccceecceeeeecCCccCCCcccC----------ceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceE
Q 015690 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 185 (402)
Q Consensus 116 e~~~G~~~~~~~~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 185 (402)
..|.|...+ .-.....|+.|+|+|.... ...+|+.|+|+|. .+..+|+.|+|+|.+
T Consensus 145 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~-------------~~~~~C~~C~G~g~v 210 (377)
T PRK14298 145 STCSGTGAK-PGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQ-------------VIESPCPVCSGTGKV 210 (377)
T ss_pred CCCCCCccc-CCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCc-------------ccCCCCCCCCCccEE
Confidence 456777665 3334567999999996532 1268999999994 245789999999876
Q ss_pred EcCCC----------------------CCCcc--CCccEE-------------------------------------EEc
Q 015690 186 INDKD----------------------RCPQC--KGEKVI-------------------------------------QEK 204 (402)
Q Consensus 186 ~~~~~----------------------~C~~C--~G~g~~-------------------------------------~~~ 204 (402)
...+. ....= .|.=++ ...
T Consensus 211 ~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld 290 (377)
T PRK14298 211 RKTRKITVNVPAGADSGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLY 290 (377)
T ss_pred EEEEEEEecCCCCCCCCCEEEEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCC
Confidence 42110 00000 011000 002
Q ss_pred EEEEEEecCCCcCCCEEecCCCcCCCC-CCCCccEEEEEEEecCCCccccCCceeeee
Q 015690 205 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEH 261 (402)
Q Consensus 205 ~~l~V~Ip~G~~~G~~i~~~geG~~~~-g~~~GDliv~i~v~~h~~f~R~g~dL~~~~ 261 (402)
..++|.||+|+++|++++|+|+|.+.+ +...|||||+|+|..|+.|++++.+|+.++
T Consensus 291 G~i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l 348 (377)
T PRK14298 291 GKVKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREF 348 (377)
T ss_pred CCEEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999999854 345799999999999999999998877654
No 64
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.38 E-value=2.9e-13 Score=120.63 Aligned_cols=58 Identities=29% Similarity=0.332 Sum_probs=52.1
Q ss_pred CcccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHhhCCccccccccc
Q 015690 1 MRFSESRKN--ASQDDLKKAYRKAAIKNHPDKGGDP-------EKFKELAQAYEVLSDPEKREIYDQ 58 (402)
Q Consensus 1 ~~iLgv~~~--As~~eIkkAYrklA~k~HPDkn~~~-------~kFk~i~~AYevLsd~~kR~~YD~ 58 (402)
+++|||+++ ++.++|++|||+|+++||||++.+. +.|..||+||++|+||.+|+.|+.
T Consensus 5 f~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL 71 (166)
T PRK01356 5 FQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML 71 (166)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 478999997 7899999999999999999998752 347899999999999999999975
No 65
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.38 E-value=4.1e-13 Score=120.40 Aligned_cols=58 Identities=22% Similarity=0.295 Sum_probs=51.9
Q ss_pred CcccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHhhCCccccccccc
Q 015690 1 MRFSESRKN--ASQDDLKKAYRKAAIKNHPDKGGD---------PEKFKELAQAYEVLSDPEKREIYDQ 58 (402)
Q Consensus 1 ~~iLgv~~~--As~~eIkkAYrklA~k~HPDkn~~---------~~kFk~i~~AYevLsd~~kR~~YD~ 58 (402)
+++|||+++ ++..+|+++||+|+++||||+..+ .++|+.||+||++|+||.+|+.|+-
T Consensus 4 f~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 4 FTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 479999996 678999999999999999999653 1579999999999999999999984
No 66
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.36 E-value=1.5e-12 Score=131.51 Aligned_cols=128 Identities=25% Similarity=0.470 Sum_probs=84.8
Q ss_pred cccccccceecceeeeecCCccCCCcccC----------ceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceE
Q 015690 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 185 (402)
Q Consensus 116 e~~~G~~~~~~~~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 185 (402)
..|+|.... .-.....|+.|+|+|.... ...+|+.|+|+|.+ +..+|+.|+|+|.+
T Consensus 159 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~-------------~~~~C~~C~G~g~v 224 (386)
T PRK14277 159 DVCKGSGAK-PGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKI-------------ITDPCNKCGGTGRI 224 (386)
T ss_pred CCCCCCCcC-CCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceee-------------ccCCCCCCCCCcEE
Confidence 346776655 2334578999999996532 12689999999943 45789999999876
Q ss_pred EcCCCCCCc-----c-------C------------CccEEEE-------------------------------------c
Q 015690 186 INDKDRCPQ-----C-------K------------GEKVIQE-------------------------------------K 204 (402)
Q Consensus 186 ~~~~~~C~~-----C-------~------------G~g~~~~-------------------------------------~ 204 (402)
...+..--. = . |.=++.. .
T Consensus 225 ~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld 304 (386)
T PRK14277 225 RRRRKIKVNIPAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLD 304 (386)
T ss_pred eeeeEEEEecCCCccCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCC
Confidence 321100000 0 0 1101100 2
Q ss_pred EEEEEEecCCCcCCCEEecCCCcCCCC-CCCCccEEEEEEEecCCCccccCCce
Q 015690 205 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDL 257 (402)
Q Consensus 205 ~~l~V~Ip~G~~~G~~i~~~geG~~~~-g~~~GDliv~i~v~~h~~f~R~g~dL 257 (402)
..++|.||+|+++|++++|+|+|.+.. +...|||||+|+|.-+..++.+..+|
T Consensus 305 G~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~Ls~~qk~~ 358 (386)
T PRK14277 305 GKVKFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQKEL 358 (386)
T ss_pred CCEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHH
Confidence 247899999999999999999999843 34579999999999776555444333
No 67
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.35 E-value=1.7e-12 Score=131.15 Aligned_cols=128 Identities=23% Similarity=0.488 Sum_probs=88.7
Q ss_pred cccccccceecceeeeecCCccCCCcccC------ceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCC
Q 015690 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 189 (402)
Q Consensus 116 e~~~G~~~~~~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~ 189 (402)
..|+|...+ .-.....|+.|+|+|.... ...+|+.|+|+|. .+..+|..|+|+|.+...+
T Consensus 177 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-------------~i~~~C~~C~G~g~v~~~~ 242 (392)
T PRK14279 177 TTCHGSGAR-PGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGS-------------IIEDPCEECKGTGVTTRTR 242 (392)
T ss_pred CCCcccccc-CCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeE-------------EeCCcCCCCCCCeEEEEee
Confidence 456777765 3334578999999997542 2368999999994 3467899999998764210
Q ss_pred ----------------------CCCCcc--CCccEE-------------------------------------EEcEEEE
Q 015690 190 ----------------------DRCPQC--KGEKVI-------------------------------------QEKKVLE 208 (402)
Q Consensus 190 ----------------------~~C~~C--~G~g~~-------------------------------------~~~~~l~ 208 (402)
+.=... .|.=++ .....++
T Consensus 243 ~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~ 322 (392)
T PRK14279 243 TINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVG 322 (392)
T ss_pred eeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEE
Confidence 000000 111000 0123589
Q ss_pred EEecCCCcCCCEEecCCCcCCCCCCCCccEEEEEEEecCCCccccCCce
Q 015690 209 VIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDL 257 (402)
Q Consensus 209 V~Ip~G~~~G~~i~~~geG~~~~g~~~GDliv~i~v~~h~~f~R~g~dL 257 (402)
|+||+|+++|++|+|+|+|++.++...|||||+|+|.-++.+..+...|
T Consensus 323 v~Ip~g~~~g~~iri~g~G~p~~~~~~GDL~I~~~v~~P~~Ls~~q~~~ 371 (392)
T PRK14279 323 VKVPAGTADGRILRVRGRGVPKRSGGAGDLLVTVKVAVPPNLDGAAAEA 371 (392)
T ss_pred EEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 9999999999999999999986666789999999999887655444333
No 68
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.35 E-value=1.8e-12 Score=130.14 Aligned_cols=131 Identities=21% Similarity=0.465 Sum_probs=90.5
Q ss_pred cccccccceecceeeeecCCccCCCcccC------ceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCC
Q 015690 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 189 (402)
Q Consensus 116 e~~~G~~~~~~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~ 189 (402)
..|.|+... .-.....|+.|+|+|.... ...+|+.|+|+|.+ +..+|+.|+|+|.+...+
T Consensus 148 ~~C~G~G~~-~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~-------------~~~~C~~C~G~g~v~~~~ 213 (373)
T PRK14301 148 DDCGGSGAA-PGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRV-------------ITHPCPKCKGSGIVQQTR 213 (373)
T ss_pred CCCCCcccC-CCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeee-------------cCCCCCCCCCCceeccce
Confidence 346676655 3334568999999997542 13689999999943 457899999998763210
Q ss_pred ----------------------CCCCcc--CCccEEEE-------------------------------------cEEEE
Q 015690 190 ----------------------DRCPQC--KGEKVIQE-------------------------------------KKVLE 208 (402)
Q Consensus 190 ----------------------~~C~~C--~G~g~~~~-------------------------------------~~~l~ 208 (402)
+.-... .|.-++.. ...++
T Consensus 214 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~ 293 (373)
T PRK14301 214 ELKVRIPAGVDTGSRLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVT 293 (373)
T ss_pred EEEEEeCCCCcCCCEEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEE
Confidence 111111 11101110 23489
Q ss_pred EEecCCCcCCCEEecCCCcCCCCC-CCCccEEEEEEEecCCCccccCCceeee
Q 015690 209 VIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFVE 260 (402)
Q Consensus 209 V~Ip~G~~~G~~i~~~geG~~~~g-~~~GDliv~i~v~~h~~f~R~g~dL~~~ 260 (402)
|+||+|+++|++|+|+|+|.+.++ ...|||||+|+|..|+.++.+..+|+..
T Consensus 294 v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l~~ 346 (373)
T PRK14301 294 LDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLRE 346 (373)
T ss_pred EEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999998543 4579999999999998887776655544
No 69
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.34 E-value=2.2e-12 Score=130.47 Aligned_cols=131 Identities=21% Similarity=0.481 Sum_probs=91.0
Q ss_pred cccccccceecceeeeecCCccCCCcccC------ceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCC
Q 015690 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 189 (402)
Q Consensus 116 e~~~G~~~~~~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~ 189 (402)
..|+|+..+.. .....|+.|+|+|.... ...+|+.|+|+|.+ +..+|+.|+|+|.+...+
T Consensus 162 ~~C~G~G~~~~-~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~-------------~~~~C~~C~G~g~v~~~~ 227 (391)
T PRK14284 162 DACSGSGANSS-QGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRV-------------ITDPCSVCRGQGRIKDKR 227 (391)
T ss_pred CCCcccccCCC-CCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcc-------------cCCcCCCCCCcceecceE
Confidence 45677766533 33578999999997532 22689999999942 457899999998653200
Q ss_pred ----------------------CCCCc--cCCc------------------------------------cEE-EEc--EE
Q 015690 190 ----------------------DRCPQ--CKGE------------------------------------KVI-QEK--KV 206 (402)
Q Consensus 190 ----------------------~~C~~--C~G~------------------------------------g~~-~~~--~~ 206 (402)
+.-+. =.|. ..+ ... ..
T Consensus 228 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~ 307 (391)
T PRK14284 228 SVHVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGT 307 (391)
T ss_pred EEEEEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcE
Confidence 00000 0011 111 112 57
Q ss_pred EEEEecCCCcCCCEEecCCCcCCCC-CCCCccEEEEEEEecCCCccccCCceeee
Q 015690 207 LEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVE 260 (402)
Q Consensus 207 l~V~Ip~G~~~G~~i~~~geG~~~~-g~~~GDliv~i~v~~h~~f~R~g~dL~~~ 260 (402)
++|+||+|+++|++|+|+|+|++.+ +..+|||||+|+|..++.++.+...|+..
T Consensus 308 i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~ 362 (391)
T PRK14284 308 CRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLRQ 362 (391)
T ss_pred EEEEECCccCCCeEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHH
Confidence 8999999999999999999999854 35689999999999998887777665544
No 70
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.32 E-value=2.8e-12 Score=128.85 Aligned_cols=129 Identities=19% Similarity=0.491 Sum_probs=88.7
Q ss_pred cccccccceecceeeeecCCccCCCcccC------ceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCC
Q 015690 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 189 (402)
Q Consensus 116 e~~~G~~~~~~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~ 189 (402)
..|+|...+ .-.....|+.|+|+|.... ...+|+.|+|+|.+ +..+|+.|+|+|.+...+
T Consensus 149 ~~C~G~g~~-~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~-------------~~~~C~~C~G~g~v~~~~ 214 (372)
T PRK14300 149 DTCHGSGSE-KGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQI-------------IKNPCKKCHGMGRYHKQR 214 (372)
T ss_pred CCCCCcccC-CCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceE-------------eCCCCCCCCCceEEEeeE
Confidence 356777655 3334568999999997532 23589999999943 467899999998863210
Q ss_pred ----------------------CCCCcc--CCc-----------------------------------c-EEEE-c-EEE
Q 015690 190 ----------------------DRCPQC--KGE-----------------------------------K-VIQE-K-KVL 207 (402)
Q Consensus 190 ----------------------~~C~~C--~G~-----------------------------------g-~~~~-~-~~l 207 (402)
+.-..- .|. . .+.. . +.+
T Consensus 215 ~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i 294 (372)
T PRK14300 215 NLSVNIPAGVENGTRIRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKV 294 (372)
T ss_pred EEEEEECCCCCCCcEEEEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEE
Confidence 000000 011 1 1110 2 478
Q ss_pred EEEecCCCcCCCEEecCCCcCCCC-CCCCccEEEEEEEecCCCccccCCcee
Q 015690 208 EVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLF 258 (402)
Q Consensus 208 ~V~Ip~G~~~G~~i~~~geG~~~~-g~~~GDliv~i~v~~h~~f~R~g~dL~ 258 (402)
+|+||+|+++|++|+|+|+|++.+ +..+|||||+|+|..|..|+-+...|+
T Consensus 295 ~v~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~v~~P~~ls~~qk~~l 346 (372)
T PRK14300 295 NLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQRELL 346 (372)
T ss_pred EEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999999854 456899999999999987665554433
No 71
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.30 E-value=3.4e-12 Score=128.18 Aligned_cols=131 Identities=18% Similarity=0.384 Sum_probs=90.3
Q ss_pred cccccccceecceeeeecCCccCCCcccC----------ceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceE
Q 015690 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 185 (402)
Q Consensus 116 e~~~G~~~~~~~~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 185 (402)
..|.|+..+ .-.....|+.|+|+|.... ...+|+.|+|+|.+ +..+|..|+|+|.+
T Consensus 142 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~-------------~~~~C~~C~G~g~v 207 (371)
T PRK14287 142 GTCHGSGAK-PGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKI-------------IKQKCATCGGKGKV 207 (371)
T ss_pred CCCCCcccC-CCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcc-------------ccccCCCCCCeeEE
Confidence 456777655 3344578999999996532 12689999999943 45789999998865
Q ss_pred EcC----------------------CCCCCcc--CCccEEE-------------------------------------Ec
Q 015690 186 IND----------------------KDRCPQC--KGEKVIQ-------------------------------------EK 204 (402)
Q Consensus 186 ~~~----------------------~~~C~~C--~G~g~~~-------------------------------------~~ 204 (402)
... -+.-..= .|.=++. ..
T Consensus 208 ~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ld 287 (371)
T PRK14287 208 RKRKKINVKVPAGIDHGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLN 287 (371)
T ss_pred eeeEEEEEEECCcCCCCCEEEEccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCC
Confidence 320 0000000 0110100 02
Q ss_pred EEEEEEecCCCcCCCEEecCCCcCCCC-CCCCccEEEEEEEecCCCccccCCceeee
Q 015690 205 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVE 260 (402)
Q Consensus 205 ~~l~V~Ip~G~~~G~~i~~~geG~~~~-g~~~GDliv~i~v~~h~~f~R~g~dL~~~ 260 (402)
..++|+||+|+++|++|+|+|+|.+.+ +...|||||+|+|..|+.|+++...|+.+
T Consensus 288 g~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~ 344 (371)
T PRK14287 288 GKVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMRE 344 (371)
T ss_pred CCEEEEECCCccCCcEEEEcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHH
Confidence 347999999999999999999999854 34579999999999999888877665544
No 72
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.29 E-value=2.6e-12 Score=115.14 Aligned_cols=58 Identities=29% Similarity=0.453 Sum_probs=52.1
Q ss_pred CcccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHhhCCccccccccc
Q 015690 1 MRFSESRKN--ASQDDLKKAYRKAAIKNHPDKGGD---------PEKFKELAQAYEVLSDPEKREIYDQ 58 (402)
Q Consensus 1 ~~iLgv~~~--As~~eIkkAYrklA~k~HPDkn~~---------~~kFk~i~~AYevLsd~~kR~~YD~ 58 (402)
|++|||++. .+..+|++|||+|+++||||++.+ .++|+.||+||+||+||.+|+.|+-
T Consensus 7 F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 7 FALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred hhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 578999998 567999999999999999999753 1579999999999999999999995
No 73
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.29 E-value=6.6e-12 Score=126.78 Aligned_cols=129 Identities=22% Similarity=0.462 Sum_probs=88.9
Q ss_pred cccccccceecceeeeecCCccCCCcccC------ceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCC
Q 015690 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 189 (402)
Q Consensus 116 e~~~G~~~~~~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~ 189 (402)
..|+|+..+ .-.....|+.|+|+|.... ...+|+.|+|+|. .+..+|..|.|+|.+...+
T Consensus 170 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-------------~~~~~C~~C~G~g~~~~~~ 235 (389)
T PRK14295 170 PACSGTGAK-NGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGL-------------IADDPCLVCKGSGRAKSSR 235 (389)
T ss_pred CCCcccccC-CCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeE-------------EeccCCCCCCCCceEeeee
Confidence 457777665 3344578999999997532 2368999999994 3467899999998763210
Q ss_pred ----------------------CCCCc--cCCccEEEE--------------------------------------cEEE
Q 015690 190 ----------------------DRCPQ--CKGEKVIQE--------------------------------------KKVL 207 (402)
Q Consensus 190 ----------------------~~C~~--C~G~g~~~~--------------------------------------~~~l 207 (402)
+.... -.|.=++.. .+.+
T Consensus 236 ~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~ 315 (389)
T PRK14295 236 TMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPV 315 (389)
T ss_pred EEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEE
Confidence 11111 011101100 2378
Q ss_pred EEEecCCCcCCCEEecCCCcCCCCCCCCccEEEEEEEecCCCccccCCcee
Q 015690 208 EVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLF 258 (402)
Q Consensus 208 ~V~Ip~G~~~G~~i~~~geG~~~~g~~~GDliv~i~v~~h~~f~R~g~dL~ 258 (402)
+|+||+|+++|++|+|+|+|.+..+...|||||+|+|.-+..+......|+
T Consensus 316 ~v~ip~g~~~g~~iri~G~G~p~~~~~~GDL~i~~~v~~P~~Ls~~qk~~l 366 (389)
T PRK14295 316 TVKLPPGTPNGRVLRVRGKGAVRKDGTRGDLLVTVEVAVPKDLSGKAREAL 366 (389)
T ss_pred EEEECCccCCCcEEEECCCCcCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999999865566899999999997776555444433
No 74
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.28 E-value=2.8e-12 Score=115.33 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=51.4
Q ss_pred CcccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC---H------HHHHHHHHHHHhhCCccccccccc
Q 015690 1 MRFSESRKN--ASQDDLKKAYRKAAIKNHPDKGGD---P------EKFKELAQAYEVLSDPEKREIYDQ 58 (402)
Q Consensus 1 ~~iLgv~~~--As~~eIkkAYrklA~k~HPDkn~~---~------~kFk~i~~AYevLsd~~kR~~YD~ 58 (402)
+++|||+++ ++..+|+++||+|+++||||+++. . +.++.||+||++|+||.+|+.|+.
T Consensus 9 f~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 9 FSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 479999996 678999999999999999999863 1 346899999999999999999994
No 75
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.28 E-value=6.9e-12 Score=125.38 Aligned_cols=129 Identities=20% Similarity=0.466 Sum_probs=89.4
Q ss_pred cccccccceecceeeeecCCccCCCcccC----------ceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceE
Q 015690 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 185 (402)
Q Consensus 116 e~~~G~~~~~~~~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 185 (402)
..|+|.... .-.....|+.|+|+|.... ...+|+.|.|+|.+ +..+|+.|+|+|.+
T Consensus 147 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~-------------~~~~C~~C~G~g~v 212 (354)
T TIGR02349 147 ETCHGTGAK-PGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKI-------------IKEPCSTCKGKGRV 212 (354)
T ss_pred CCCCCCCCC-CCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCccee-------------cCCCCCCCCCCcEe
Confidence 456676654 2233578999999996432 12589999999943 35689999999876
Q ss_pred EcCC----------------------CCCCcc--CCccEE-------------------------------------EEc
Q 015690 186 INDK----------------------DRCPQC--KGEKVI-------------------------------------QEK 204 (402)
Q Consensus 186 ~~~~----------------------~~C~~C--~G~g~~-------------------------------------~~~ 204 (402)
...+ +....= .|.=++ ...
T Consensus 213 ~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ld 292 (354)
T TIGR02349 213 KERKTITVKIPAGVDTGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLD 292 (354)
T ss_pred cccceEEEEECCCCCCCCEEEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCC
Confidence 4311 111100 011000 002
Q ss_pred EEEEEEecCCCcCCCEEecCCCcCCCCC-CCCccEEEEEEEecCCCccccCCcee
Q 015690 205 KVLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLF 258 (402)
Q Consensus 205 ~~l~V~Ip~G~~~G~~i~~~geG~~~~g-~~~GDliv~i~v~~h~~f~R~g~dL~ 258 (402)
..++|.||+|+++|++++|+|+|++.++ ..+|||||+|+|..++.|+++..+++
T Consensus 293 G~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~l 347 (354)
T TIGR02349 293 GDVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELL 347 (354)
T ss_pred ceEEEEECCcccCCcEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 3589999999999999999999998543 46899999999999998888776554
No 76
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.28 E-value=1e-11 Score=124.97 Aligned_cols=128 Identities=24% Similarity=0.470 Sum_probs=86.9
Q ss_pred cccccccceecceeeeecCCccCCCcccC----------ceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceE
Q 015690 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 185 (402)
Q Consensus 116 e~~~G~~~~~~~~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 185 (402)
..|.|...+ .-.....|+.|+|+|.... ...+|+.|+|+|.+ +..+|+.|+|+|.+
T Consensus 143 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~-------------~~~~C~~C~G~g~v 208 (378)
T PRK14278 143 DRCHGKGTA-GDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEV-------------IPDPCHECAGDGRV 208 (378)
T ss_pred CCCcCccCC-CCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCcccee-------------eCCCCCCCCCceeE
Confidence 456777665 3334578999999997431 13689999999943 45789999999876
Q ss_pred EcCC----------------------CCCCc--cCCc------------------------------------cEEE-E-
Q 015690 186 INDK----------------------DRCPQ--CKGE------------------------------------KVIQ-E- 203 (402)
Q Consensus 186 ~~~~----------------------~~C~~--C~G~------------------------------------g~~~-~- 203 (402)
...+ +.-+. -.|. -.+. .
T Consensus 209 ~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld 288 (378)
T PRK14278 209 RARREITVKIPAGVGDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAIL 288 (378)
T ss_pred ecceEEEEEECCCCCCCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCC
Confidence 3211 00000 0111 1111 1
Q ss_pred cEEEEEEecCCCcCCCEEecCCCcCCCC-CCCCccEEEEEEEecCCCccccCCce
Q 015690 204 KKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDL 257 (402)
Q Consensus 204 ~~~l~V~Ip~G~~~G~~i~~~geG~~~~-g~~~GDliv~i~v~~h~~f~R~g~dL 257 (402)
...++|.||+|+++|++++|+|+|++.. +...|||||+|+|.-+..++.+...|
T Consensus 289 ~~~i~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~ 343 (378)
T PRK14278 289 DGPSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDIEL 343 (378)
T ss_pred CCeEEEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHH
Confidence 3468999999999999999999999854 44679999999999776555444333
No 77
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.27 E-value=9.9e-12 Score=124.84 Aligned_cols=129 Identities=22% Similarity=0.432 Sum_probs=88.9
Q ss_pred cccccccceecceeeeecCCccCCCcccC------ceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcC-
Q 015690 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIND- 188 (402)
Q Consensus 116 e~~~G~~~~~~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~- 188 (402)
..|+|...+ .-.....|+.|+|+|.... ...+|+.|+|+|.+ +..+|+.|+|+|.+...
T Consensus 154 ~~C~G~G~~-~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~-------------~~~~C~~C~G~g~~~~~~ 219 (372)
T PRK14286 154 VDCNGSGAS-KGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTV-------------ISNPCKTCGGQGLQEKRR 219 (372)
T ss_pred CCCcCCCcC-CCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeE-------------ecccCCCCCCCcEEecce
Confidence 456777665 2234568999999996532 23689999999943 45789999999886431
Q ss_pred ---------------------CCCCCc--cCCccEEEE--------------------------------------cEEE
Q 015690 189 ---------------------KDRCPQ--CKGEKVIQE--------------------------------------KKVL 207 (402)
Q Consensus 189 ---------------------~~~C~~--C~G~g~~~~--------------------------------------~~~l 207 (402)
-+.+.. -.|.-++.. .+.+
T Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i 299 (372)
T PRK14286 220 TINIKIPPGVETGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKA 299 (372)
T ss_pred EEEEEECCCCCCCCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEE
Confidence 111211 112211111 2358
Q ss_pred EEEecCCCcCCCEEecCCCcCCCC-CCCCccEEEEEEEecCCCccccCCcee
Q 015690 208 EVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLF 258 (402)
Q Consensus 208 ~V~Ip~G~~~G~~i~~~geG~~~~-g~~~GDliv~i~v~~h~~f~R~g~dL~ 258 (402)
+|+||+|+++|++++|+|+|.+.. +...|||||+|+|.-+..++.+..+|+
T Consensus 300 ~v~ip~g~~~g~~~ri~G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l 351 (372)
T PRK14286 300 KMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRELI 351 (372)
T ss_pred EEEeCCccCCCcEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999999854 345799999999998876665554443
No 78
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.27 E-value=9.1e-12 Score=125.28 Aligned_cols=132 Identities=19% Similarity=0.394 Sum_probs=92.1
Q ss_pred cccccccceecceeeeecCCccCCCcccC----------ceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceE
Q 015690 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 185 (402)
Q Consensus 116 e~~~G~~~~~~~~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 185 (402)
..|.|...+. -.....|+.|+|+|.... ...+|+.|.|+|. .+..+|..|.|+|.+
T Consensus 147 ~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~-------------~~~~~C~~C~G~g~v 212 (374)
T PRK14293 147 ETCRGSGAKP-GTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQ-------------VIEDPCDACGGQGVK 212 (374)
T ss_pred CCCCCcCCCC-CCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCccee-------------EeccCCCCCCCCccc
Confidence 4566766552 234568999999997531 1258999999994 345789999999875
Q ss_pred EcCCCC----------------------CCcc--CCccEEEE-------------------------------------c
Q 015690 186 INDKDR----------------------CPQC--KGEKVIQE-------------------------------------K 204 (402)
Q Consensus 186 ~~~~~~----------------------C~~C--~G~g~~~~-------------------------------------~ 204 (402)
...+.. -..- .|.=++.. .
T Consensus 213 ~~~~~~~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ld 292 (374)
T PRK14293 213 QVTKKLKINIPAGVDTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVD 292 (374)
T ss_pred ccceEEEEEeCCCCCCCCEEEEccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCC
Confidence 331110 0000 01101110 2
Q ss_pred EEEEEEecCCCcCCCEEecCCCcCCCCCC--CCccEEEEEEEecCCCccccCCceeeee
Q 015690 205 KVLEVIVEKGMQNGQKITFPGEADEAPDT--VTGDIVFVLQQKEHPKFKRKGDDLFVEH 261 (402)
Q Consensus 205 ~~l~V~Ip~G~~~G~~i~~~geG~~~~g~--~~GDliv~i~v~~h~~f~R~g~dL~~~~ 261 (402)
..++|+||+|+++|++++|+|+|.+.++. ..|||||+|+|..|+.|++++.+|+.++
T Consensus 293 G~~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l 351 (374)
T PRK14293 293 GPVELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKL 351 (374)
T ss_pred CCEEEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 24789999999999999999999985443 5799999999999999999988877554
No 79
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.24 E-value=1.3e-11 Score=124.29 Aligned_cols=129 Identities=22% Similarity=0.439 Sum_probs=87.2
Q ss_pred cccccccceecceeeeecCCccCCCcccC----------ceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceE
Q 015690 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 185 (402)
Q Consensus 116 e~~~G~~~~~~~~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 185 (402)
+.|.|...+ .-.....|+.|+|+|.... ...+|+.|+|+|.+ +..+|+.|+|+|.+
T Consensus 150 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~-------------~~~~C~~C~G~g~~ 215 (380)
T PRK14276 150 HTCNGSGAK-PGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKE-------------IKEPCQTCHGTGHE 215 (380)
T ss_pred CCCcCcccC-CCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcc-------------ccCCCCCCCCceEE
Confidence 457777665 2233568999999997532 12689999999943 45789999999875
Q ss_pred Ec----------------------CCCCCC--ccCCccEEEE-------------------------------------c
Q 015690 186 IN----------------------DKDRCP--QCKGEKVIQE-------------------------------------K 204 (402)
Q Consensus 186 ~~----------------------~~~~C~--~C~G~g~~~~-------------------------------------~ 204 (402)
.. .-+... .-.|.-++.. .
T Consensus 216 ~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld 295 (380)
T PRK14276 216 KQAHTVSVKIPAGVETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVH 295 (380)
T ss_pred EEEEEEEEEeCCCccCCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCC
Confidence 32 001111 1112211111 2
Q ss_pred EEEEEEecCCCcCCCEEecCCCcCCCC-CCCCccEEEEEEEecCCCccccCCcee
Q 015690 205 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLF 258 (402)
Q Consensus 205 ~~l~V~Ip~G~~~G~~i~~~geG~~~~-g~~~GDliv~i~v~~h~~f~R~g~dL~ 258 (402)
..++|.||+|+++|++++|+|+|++.+ +..+|||||+|+|..+..++.+...|+
T Consensus 296 g~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l 350 (380)
T PRK14276 296 GDVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKEAL 350 (380)
T ss_pred CcEEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 347899999999999999999999854 346799999999998876655544433
No 80
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.24 E-value=1.7e-11 Score=123.38 Aligned_cols=129 Identities=20% Similarity=0.424 Sum_probs=87.1
Q ss_pred cccccccceecceeeeecCCccCCCcccC----------ceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceE
Q 015690 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 185 (402)
Q Consensus 116 e~~~G~~~~~~~~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 185 (402)
..|.|...+ .-.....|+.|+|+|.... ...+|+.|+|+|.+ +..+|+.|+|+|.+
T Consensus 147 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~-------------~~~~C~~C~G~g~v 212 (376)
T PRK14280 147 DTCHGSGAK-PGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQE-------------IKEKCPTCHGKGKV 212 (376)
T ss_pred CCCCCcccC-CCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCce-------------ecCCCCCCCCceEE
Confidence 456777654 3334578999999996431 23689999999943 46789999999876
Q ss_pred EcC----------------------CCCCC--ccCCccEEEE-------------------------------------c
Q 015690 186 IND----------------------KDRCP--QCKGEKVIQE-------------------------------------K 204 (402)
Q Consensus 186 ~~~----------------------~~~C~--~C~G~g~~~~-------------------------------------~ 204 (402)
... -+... .-.|.-++.. .
T Consensus 213 ~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld 292 (376)
T PRK14280 213 RKRKKINVKIPAGVDNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLH 292 (376)
T ss_pred EEEEEEEEEeCCCCcCCcEEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCC
Confidence 320 01111 1112211111 2
Q ss_pred EEEEEEecCCCcCCCEEecCCCcCCCC-CCCCccEEEEEEEecCCCccccCCcee
Q 015690 205 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLF 258 (402)
Q Consensus 205 ~~l~V~Ip~G~~~G~~i~~~geG~~~~-g~~~GDliv~i~v~~h~~f~R~g~dL~ 258 (402)
..++|+||+|+++|++++|+|+|.+.. +...|||||+|+|..+..++.+...|+
T Consensus 293 g~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q~~~l 347 (376)
T PRK14280 293 GKVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKELL 347 (376)
T ss_pred ceEEEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 357999999999999999999999854 346799999999998876554443333
No 81
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.23 E-value=2.3e-11 Score=123.22 Aligned_cols=125 Identities=19% Similarity=0.393 Sum_probs=84.9
Q ss_pred cccccccceecceeeeecCCccCCCcccC----------ceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceE
Q 015690 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 185 (402)
Q Consensus 116 e~~~G~~~~~~~~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 185 (402)
..|+|...+-. ....|+.|+|+|.... ...+|+.|+|+|. .+..+|+.|+|+|.+
T Consensus 167 ~~C~G~G~~~~--~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~-------------~~~~~C~~C~G~g~v 231 (397)
T PRK14281 167 KECNGTGSKTG--ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGR-------------VVKDRCPACYGEGIK 231 (397)
T ss_pred CCCCCcccCCC--CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceee-------------eeCCCCCCCCCCccE
Confidence 34677766532 4568999999997532 1358999999994 346789999999876
Q ss_pred EcCC----------------------CCCCcc--CCccEEE-------------------------------------Ec
Q 015690 186 INDK----------------------DRCPQC--KGEKVIQ-------------------------------------EK 204 (402)
Q Consensus 186 ~~~~----------------------~~C~~C--~G~g~~~-------------------------------------~~ 204 (402)
...+ +.-..- .|.=++. ..
T Consensus 232 ~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld 311 (397)
T PRK14281 232 QGEVTVKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLD 311 (397)
T ss_pred ecceEEEEecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCC
Confidence 4210 000000 0110000 02
Q ss_pred EEEEEEecCCCcCCCEEecCCCcCCCC-CCCCccEEEEEEEecCCCccccCC
Q 015690 205 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGD 255 (402)
Q Consensus 205 ~~l~V~Ip~G~~~G~~i~~~geG~~~~-g~~~GDliv~i~v~~h~~f~R~g~ 255 (402)
..++|+||+|+++|++++|+|+|.+.+ +...|||||+|+|.-+..++.+..
T Consensus 312 g~i~v~ip~g~~~G~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk 363 (397)
T PRK14281 312 GAVKLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDK 363 (397)
T ss_pred ccEEEEeCCccCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHH
Confidence 357899999999999999999999854 346799999999997765554443
No 82
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.22 E-value=2.1e-11 Score=122.60 Aligned_cols=131 Identities=19% Similarity=0.438 Sum_probs=90.6
Q ss_pred cccccccceecceeeeecCCccCCCcccCc----------eeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceE
Q 015690 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSGA----------SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 185 (402)
Q Consensus 116 e~~~G~~~~~~~~r~~~C~~C~G~G~~~~~----------~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 185 (402)
+.|.|+...........|+.|+|+|..... ..+|+.|+|+|.. +..+|+.|.|+|.+
T Consensus 143 ~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~-------------~~~~C~~C~G~g~v 209 (371)
T PRK14292 143 EHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQI-------------ITDPCTVCRGRGRT 209 (371)
T ss_pred CCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCccccee-------------cCCCCCCCCCceEE
Confidence 467777766444446789999999975421 2589999999953 46789999999876
Q ss_pred EcCC----------------------CCCCccCCccEEEE-------------------------------------cEE
Q 015690 186 INDK----------------------DRCPQCKGEKVIQE-------------------------------------KKV 206 (402)
Q Consensus 186 ~~~~----------------------~~C~~C~G~g~~~~-------------------------------------~~~ 206 (402)
...+ +.-+.=.|.=++.. ...
T Consensus 210 ~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~~~~GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~ 289 (371)
T PRK14292 210 LKAETVKVKLPRGIDEGYRIRVAGMGNEGPGGNGDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGP 289 (371)
T ss_pred eecceEEEEECCCCCCCcEEEEecCcCCCCCCCCCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCC
Confidence 3311 00000001111110 123
Q ss_pred EEEEecCCCcCCCEEecCCCcCCCC-CCCCccEEEEEEEecCCCccccCCceee
Q 015690 207 LEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFV 259 (402)
Q Consensus 207 l~V~Ip~G~~~G~~i~~~geG~~~~-g~~~GDliv~i~v~~h~~f~R~g~dL~~ 259 (402)
.+|.||+|+++|++++|+|+|++.+ +..+|||||+|+|..++.|+.+...|+.
T Consensus 290 ~~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~ 343 (371)
T PRK14292 290 QVIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREALE 343 (371)
T ss_pred EEEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 4799999999999999999999854 4568999999999999888776655543
No 83
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.20 E-value=3.1e-11 Score=121.20 Aligned_cols=128 Identities=21% Similarity=0.417 Sum_probs=85.3
Q ss_pred cccccccceecceeeeecCCccCCCcccC----------ceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceE
Q 015690 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 185 (402)
Q Consensus 116 e~~~G~~~~~~~~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 185 (402)
..|.|+..+ .-.....|+.|+|+|.... ...+|+.|+|+|. .+..+|+.|+|+|.+
T Consensus 153 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~-------------~~~~~C~~C~G~g~v 218 (372)
T PRK14296 153 SKCFGSGAE-SNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGK-------------IIKNKCKNCKGKGKY 218 (372)
T ss_pred CCCCCCccC-CCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcce-------------eecccccCCCCceEE
Confidence 456777655 2234578999999997542 1258999999994 346789999999865
Q ss_pred EcC----------------------CCCCCcc--CCccEE--------------------------------------EE
Q 015690 186 IND----------------------KDRCPQC--KGEKVI--------------------------------------QE 203 (402)
Q Consensus 186 ~~~----------------------~~~C~~C--~G~g~~--------------------------------------~~ 203 (402)
... -+....= .|.=++ ..
T Consensus 219 ~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tl 298 (372)
T PRK14296 219 LERKKIEVNIPKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTL 298 (372)
T ss_pred EEEEEEEEEECCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCC
Confidence 320 0111000 011000 00
Q ss_pred cEEEEEEecCCCcCCCEEecCCCcCCCC--CCCCccEEEEEEEecCCCccccCCce
Q 015690 204 KKVLEVIVEKGMQNGQKITFPGEADEAP--DTVTGDIVFVLQQKEHPKFKRKGDDL 257 (402)
Q Consensus 204 ~~~l~V~Ip~G~~~G~~i~~~geG~~~~--g~~~GDliv~i~v~~h~~f~R~g~dL 257 (402)
...++|.||+|+++|++++|+|+|.+.. ....|||||+|+|.-++.++.+...|
T Consensus 299 dG~~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~ 354 (372)
T PRK14296 299 DGDIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKEL 354 (372)
T ss_pred CCCEEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHH
Confidence 2247999999999999999999999732 33579999999999877655544443
No 84
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.19 E-value=4.6e-11 Score=120.44 Aligned_cols=127 Identities=24% Similarity=0.459 Sum_probs=84.5
Q ss_pred cccccccceecceeeeecCCccCCCcccC----------ceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceE
Q 015690 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 185 (402)
Q Consensus 116 e~~~G~~~~~~~~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 185 (402)
..|.|...+ .-.....|+.|+|+|.... ...+|+.|+|+|.+ +..+|..|+|.|.+
T Consensus 152 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~-------------~~~~C~~C~G~g~v 217 (380)
T PRK14297 152 ETCNGTGAK-PGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKV-------------IEDPCNKCHGKGKV 217 (380)
T ss_pred CCccccccc-CCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceE-------------cCCCCCCCCCCeEE
Confidence 356776655 3333578999999996531 23689999999943 35789999999854
Q ss_pred EcCC----------------------CCCCcc--CCccEEE-------------------------------------Ec
Q 015690 186 INDK----------------------DRCPQC--KGEKVIQ-------------------------------------EK 204 (402)
Q Consensus 186 ~~~~----------------------~~C~~C--~G~g~~~-------------------------------------~~ 204 (402)
...+ +.-..- .|.=++. ..
T Consensus 218 ~~~~~i~V~Ip~G~~~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ld 297 (380)
T PRK14297 218 RKNRKIKVNVPAGVDTGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVD 297 (380)
T ss_pred EeEeEEEEEeCCCCCCCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCC
Confidence 2200 000000 0110000 02
Q ss_pred EEEEEEecCCCcCCCEEecCCCcCCCC-CCCCccEEEEEEEecCCCccccCCc
Q 015690 205 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDD 256 (402)
Q Consensus 205 ~~l~V~Ip~G~~~G~~i~~~geG~~~~-g~~~GDliv~i~v~~h~~f~R~g~d 256 (402)
..++|.||+|+++|++++|+|+|.+.. +...|||||+|+|.-+..++.+...
T Consensus 298 g~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~ 350 (380)
T PRK14297 298 GEVKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQKE 350 (380)
T ss_pred CcEEEEECCCcCCCCEEEEcCCCcCCCCCCCCCcEEEEEEEEcCCCCCHHHHH
Confidence 357999999999999999999999843 3467999999999977655544433
No 85
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.1e-11 Score=123.00 Aligned_cols=58 Identities=43% Similarity=0.543 Sum_probs=54.7
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhhCCcccccccccc
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQY 59 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~---~~kFk~i~~AYevLsd~~kR~~YD~~ 59 (402)
.+|||++++|+++|||+|||+|+--|||||-. +|-||.+..|||||+|++||+.||.-
T Consensus 239 svlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 239 SALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred hhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 58999999999999999999999999999974 48999999999999999999999973
No 86
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.17 E-value=4.8e-11 Score=120.59 Aligned_cols=124 Identities=20% Similarity=0.422 Sum_probs=83.4
Q ss_pred ccccccceecceeeeecCCccCCCcccCc----------eeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEE
Q 015690 117 LYNGTSKKLSLSRNVICTKCKGKGSKSGA----------SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETI 186 (402)
Q Consensus 117 ~~~G~~~~~~~~r~~~C~~C~G~G~~~~~----------~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~ 186 (402)
.|.|.... .-.....|+.|+|+|..... ..+|+.|+|+|.+ +...|+.|+|+|.+.
T Consensus 159 ~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~-------------~~~~C~~C~G~g~v~ 224 (386)
T PRK14289 159 HCHGTGAE-GNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKI-------------IKKKCKKCGGEGIVY 224 (386)
T ss_pred CCCCCCCC-CCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccc-------------cCcCCCCCCCCcEEe
Confidence 45665544 23345789999999976421 2589999999943 357899999998763
Q ss_pred cC----------------------CCCCCc--cCCccEEE-------------------------------------EcE
Q 015690 187 ND----------------------KDRCPQ--CKGEKVIQ-------------------------------------EKK 205 (402)
Q Consensus 187 ~~----------------------~~~C~~--C~G~g~~~-------------------------------------~~~ 205 (402)
.. -+.... =.|.-++. ...
T Consensus 225 ~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg 304 (386)
T PRK14289 225 GEEVITVKIPAGVAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDG 304 (386)
T ss_pred eeEEEEEEeCCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCc
Confidence 20 011000 01110110 023
Q ss_pred EEEEEecCCCcCCCEEecCCCcCCCC-CCCCccEEEEEEEecCCCccccC
Q 015690 206 VLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKG 254 (402)
Q Consensus 206 ~l~V~Ip~G~~~G~~i~~~geG~~~~-g~~~GDliv~i~v~~h~~f~R~g 254 (402)
.++|.||+|+++|++++|+|+|.+.+ +...|||||+|+|.-+..++.+.
T Consensus 305 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~q 354 (386)
T PRK14289 305 KAKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLSKEE 354 (386)
T ss_pred eEEEEECCccCCCcEEEECCCCcCCCCCCCCCcEEEEEEEEeCCCCCHHH
Confidence 58999999999999999999999854 45689999999998765544443
No 87
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.17 E-value=8.5e-11 Score=119.49 Aligned_cols=125 Identities=22% Similarity=0.385 Sum_probs=82.7
Q ss_pred cccccccceecceeeeecCCccCCCcccC----------ceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceE
Q 015690 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 185 (402)
Q Consensus 116 e~~~G~~~~~~~~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 185 (402)
..|+|+..+- .....|+.|+|+|.... ...+|+.|+|+|.++ ....+|+.|+|+|.+
T Consensus 154 ~~C~G~G~~~--~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i-----------~~~~~C~~C~G~g~v 220 (421)
T PTZ00037 154 ANCEGHGGPK--DAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKII-----------PESKKCKNCSGKGVK 220 (421)
T ss_pred cccCCCCCCC--CCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceec-----------cccccCCcCCCccee
Confidence 4577777542 24578999999996321 235899999999532 234789999999876
Q ss_pred EcCC----------------------CCCCc-cCCccEEEE--------------------------------------c
Q 015690 186 INDK----------------------DRCPQ-CKGEKVIQE--------------------------------------K 204 (402)
Q Consensus 186 ~~~~----------------------~~C~~-C~G~g~~~~--------------------------------------~ 204 (402)
...+ +.-+. =.|.=++.. .
T Consensus 221 ~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG 300 (421)
T PTZ00037 221 KTRKILEVNIDKGVPNQHKITFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDG 300 (421)
T ss_pred eeeeEEEEeeCCCCCCCcEEEEecccCCCCCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCC
Confidence 3210 00000 001100000 2
Q ss_pred EEEEEEecCC--CcCCCEEecCCCcCCCCC--CCCccEEEEEEEecC--CCcccc
Q 015690 205 KVLEVIVEKG--MQNGQKITFPGEADEAPD--TVTGDIVFVLQQKEH--PKFKRK 253 (402)
Q Consensus 205 ~~l~V~Ip~G--~~~G~~i~~~geG~~~~g--~~~GDliv~i~v~~h--~~f~R~ 253 (402)
+.++|+||+| +++|++++|+|+|.+... ...|||||+|+|.-+ ..++.+
T Consensus 301 ~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~ 355 (421)
T PTZ00037 301 RKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNE 355 (421)
T ss_pred CeEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHH
Confidence 3589999999 999999999999998533 357999999999876 544433
No 88
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.15 E-value=1.3e-10 Score=117.19 Aligned_cols=118 Identities=25% Similarity=0.492 Sum_probs=80.0
Q ss_pred cccccccceecceeeeecCCccCCCcccC------ceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCC
Q 015690 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 189 (402)
Q Consensus 116 e~~~G~~~~~~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~ 189 (402)
..|+|...+ .-.....|+.|+|+|.... ...+|+.|+|+|. +..+|+.|+|.|.+...+
T Consensus 160 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~--------------~~~~C~~C~G~g~v~~~~ 224 (382)
T PRK14291 160 EACGGTGYD-PGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV--------------LREPCSKCNGRGLVIKKE 224 (382)
T ss_pred CCCccccCC-CCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceE--------------EccCCCCCCCCceEEeee
Confidence 346676655 3334578999999997532 1268999999993 246899999998653200
Q ss_pred ----------------------CCCC-c-cCCc------------------------------------cEEEE--cEEE
Q 015690 190 ----------------------DRCP-Q-CKGE------------------------------------KVIQE--KKVL 207 (402)
Q Consensus 190 ----------------------~~C~-~-C~G~------------------------------------g~~~~--~~~l 207 (402)
+.-. . =.|. ..+.. ...+
T Consensus 225 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l 304 (382)
T PRK14291 225 TIKVRIPPGVDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKE 304 (382)
T ss_pred EEEEEeCCCCCCCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEE
Confidence 0000 0 0000 00000 2368
Q ss_pred EEEecCCCcCCCEEecCCCcCCCCC-CCCccEEEEEEEecCC
Q 015690 208 EVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHP 248 (402)
Q Consensus 208 ~V~Ip~G~~~G~~i~~~geG~~~~g-~~~GDliv~i~v~~h~ 248 (402)
+|+||+|+++|++|+|+|+|++.++ ..+|||||+|+|.-+.
T Consensus 305 ~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~~~V~~P~ 346 (382)
T PRK14291 305 KVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVPK 346 (382)
T ss_pred EEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCC
Confidence 9999999999999999999998543 4679999999998665
No 89
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.13 E-value=1.2e-10 Score=117.42 Aligned_cols=129 Identities=22% Similarity=0.427 Sum_probs=85.9
Q ss_pred cccccccceecceeeeecCCccCCCcccC----------ceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceE
Q 015690 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 185 (402)
Q Consensus 116 e~~~G~~~~~~~~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 185 (402)
..|+|.... .-.....|+.|+|+|.... ...+|+.|+|+|.. +..+|..|+|+|.+
T Consensus 150 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~-------------~~~~C~~C~G~g~v 215 (378)
T PRK14283 150 PVCNGSRAE-PGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKI-------------VEKPCSNCHGKGVV 215 (378)
T ss_pred CCCCccccC-CCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCcccee-------------cCCCCCCCCCceee
Confidence 456777655 2234467999999997531 12689999999942 45789999999876
Q ss_pred EcCCC----------------------CCCc--cCCccEE------------------------------------E-Ec
Q 015690 186 INDKD----------------------RCPQ--CKGEKVI------------------------------------Q-EK 204 (402)
Q Consensus 186 ~~~~~----------------------~C~~--C~G~g~~------------------------------------~-~~ 204 (402)
...+. .... =.|.-++ . ..
T Consensus 216 ~~~~~l~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tld 295 (378)
T PRK14283 216 RETKTISVKIPAGVETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTID 295 (378)
T ss_pred ccceeEEEEECCCCCCCcEEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCC
Confidence 33110 0000 0111000 0 12
Q ss_pred EEEEEEecCCCcCCCEEecCCCcCCCC-CCCCccEEEEEEEecCCCccccCCcee
Q 015690 205 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLF 258 (402)
Q Consensus 205 ~~l~V~Ip~G~~~G~~i~~~geG~~~~-g~~~GDliv~i~v~~h~~f~R~g~dL~ 258 (402)
..++|.||+|+++|++|+|+|+|.+.. +...|||||+|++.-+..++.+...|+
T Consensus 296 G~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~~l~~~q~~ll 350 (378)
T PRK14283 296 GPVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVKVVVPKKLSPKQKELL 350 (378)
T ss_pred ceEEEEeCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHH
Confidence 368999999999999999999999853 346799999999987765554443333
No 90
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.11 E-value=2.6e-11 Score=119.53 Aligned_cols=62 Identities=37% Similarity=0.636 Sum_probs=57.8
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHhhCCcccccccccccccc
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---------PEKFKELAQAYEVLSDPEKREIYDQYGEDA 63 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~---------~~kFk~i~~AYevLsd~~kR~~YD~~G~~~ 63 (402)
+||||+.++|..+||++||+|.+||||||.+. ++++++|+.||+.|+|...|+.|=.||.-.
T Consensus 102 EILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd 172 (610)
T COG5407 102 EILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPD 172 (610)
T ss_pred HhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCC
Confidence 79999999999999999999999999999764 389999999999999999999999998643
No 91
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.02 E-value=2.6e-10 Score=100.89 Aligned_cols=50 Identities=30% Similarity=0.382 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHhhCCcccccccccc
Q 015690 10 ASQDDLKKAYRKAAIKNHPDKGGD---------PEKFKELAQAYEVLSDPEKREIYDQY 59 (402)
Q Consensus 10 As~~eIkkAYrklA~k~HPDkn~~---------~~kFk~i~~AYevLsd~~kR~~YD~~ 59 (402)
-+..+|++|||+|+++||||+.+. .+.|+.||+||++|+||.+|+.|+.-
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~ 61 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS 61 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 367899999999999999998542 16899999999999999999999963
No 92
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.92 E-value=3.4e-09 Score=103.22 Aligned_cols=72 Identities=31% Similarity=0.422 Sum_probs=65.2
Q ss_pred ccccCCceeeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceEEecCCCCCCCCCCCCCCcEEEEEEEeCCC
Q 015690 250 FKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPE 329 (402)
Q Consensus 250 f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~P~ 329 (402)
+.|+|.||++++.|||.||++|+++.| +++|+.+.|+|||| +++|++++++|+|++. |||||+|+|.-++
T Consensus 125 ~~~~g~dl~~~l~isL~ea~~G~~~~i-~l~g~~~~V~Ip~G--~~~G~~ir~~g~G~~~-------GDL~v~i~v~~h~ 194 (291)
T PRK14299 125 RARKGRDLEAELPLTLEEAYRGGEKVV-EVAGERLSVRIPPG--VREGQVIRLAGKGRQG-------GDLYLVVRLLPHP 194 (291)
T ss_pred CCCCCCCEEEEEEecHHHHhCCCeEEE-eeCCEEEEEecCCC--cCCCcEEEECCCCCCC-------CCEEEEEEEcCCC
Confidence 457899999999999999999999998 78998899999999 7999999999999972 9999999998666
Q ss_pred CC
Q 015690 330 SL 331 (402)
Q Consensus 330 ~l 331 (402)
.+
T Consensus 195 ~f 196 (291)
T PRK14299 195 VF 196 (291)
T ss_pred Ce
Confidence 54
No 93
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.90 E-value=3.2e-09 Score=87.69 Aligned_cols=60 Identities=28% Similarity=0.655 Sum_probs=50.0
Q ss_pred eeecCCccCCCcccCceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEE
Q 015690 130 NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQE 203 (402)
Q Consensus 130 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~ 203 (402)
.+.|..|+|+|.. +|+.|+|+|++...+ ++ .++++.+|+.|+|+|.+ .|+.|+|++++..
T Consensus 41 ~v~C~~C~GsG~~-----~C~~C~G~G~v~~~~--~g--~~q~~~~C~~C~G~Gk~-----~C~~C~G~G~~~~ 100 (111)
T PLN03165 41 TQPCFPCSGTGAQ-----VCRFCVGSGNVTVEL--GG--GEKEVSKCINCDGAGSL-----TCTTCQGSGIQPR 100 (111)
T ss_pred CCCCCCCCCCCCc-----CCCCCcCcCeEEEEe--CC--cEEEEEECCCCCCccee-----eCCCCCCCEEEee
Confidence 4789999999983 899999999876543 33 36789999999999974 4999999998765
No 94
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.68 E-value=2e-08 Score=90.10 Aligned_cols=58 Identities=21% Similarity=0.215 Sum_probs=50.2
Q ss_pred CcccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC--H-------HHHHHHHHHHHhhCCccccccccc
Q 015690 1 MRFSESRKN--ASQDDLKKAYRKAAIKNHPDKGGD--P-------EKFKELAQAYEVLSDPEKREIYDQ 58 (402)
Q Consensus 1 ~~iLgv~~~--As~~eIkkAYrklA~k~HPDkn~~--~-------~kFk~i~~AYevLsd~~kR~~YD~ 58 (402)
|++||+++. .+..++++.||+|.+++|||+... + +.-..||+||.+|+||-+|+.|=-
T Consensus 5 F~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 5 FALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred HHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 578999987 899999999999999999999643 1 356789999999999999998853
No 95
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.67 E-value=6.7e-08 Score=94.82 Aligned_cols=75 Identities=24% Similarity=0.367 Sum_probs=62.7
Q ss_pred ccCCceeeeeccCHHHHhcCCEEEE----eccC--C-------cEEEEEeCCCccccCCceEEecCCCCCCCCCCCCCCc
Q 015690 252 RKGDDLFVEHTLSLTEALCGFQFVI----THLD--G-------RQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGK 318 (402)
Q Consensus 252 R~g~dL~~~~~I~l~eAl~G~~~~i----~tld--G-------~~l~v~i~~g~vi~~g~~~~i~g~Gmp~~~~~~~~Gd 318 (402)
++|.||++++.|+|.||+.|+...| ++++ | +.+.|.|||| +++|++++++|+|||.. +...+||
T Consensus 115 ~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~-~~~~~GD 191 (306)
T PRK10266 115 ARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAG--VGNGQRIRLKGQGTPGE-NGGPNGD 191 (306)
T ss_pred CCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCC--CcCCcEEEEecCCcCCC-CCCCCcc
Confidence 5689999999999999999995544 4454 3 4689999999 79999999999999964 3346899
Q ss_pred EEEEEEEeCCCC
Q 015690 319 LYIHFTVDFPES 330 (402)
Q Consensus 319 L~i~~~V~~P~~ 330 (402)
|||+|+|. |..
T Consensus 192 l~v~i~v~-ph~ 202 (306)
T PRK10266 192 LWLVIHIA-PHP 202 (306)
T ss_pred EEEEEEEc-CCC
Confidence 99999998 755
No 96
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.1e-07 Score=102.15 Aligned_cols=47 Identities=32% Similarity=0.522 Sum_probs=40.2
Q ss_pred cccCCCCC----CCHHHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhhC
Q 015690 2 RFSESRKN----ASQDDLKKAYRKAAIKNHPDKGGD-PEKFKELAQAYEVLS 48 (402)
Q Consensus 2 ~iLgv~~~----As~~eIkkAYrklA~k~HPDkn~~-~~kFk~i~~AYevLs 48 (402)
+||.|+-+ -..+.||++|+|||.||||||||. .++|-++++|||.|+
T Consensus 1285 eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1285 EILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLS 1336 (2235)
T ss_pred HHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence 56777643 234789999999999999999996 599999999999998
No 97
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=4e-07 Score=73.45 Aligned_cols=49 Identities=27% Similarity=0.480 Sum_probs=46.0
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhCCc
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDP 50 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~~~kFk~i~~AYevLsd~ 50 (402)
-||||+++++.+.||+|+||+-+..|||+.+++-.-.+||||+++|...
T Consensus 60 lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 60 LILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEGT 108 (112)
T ss_pred HHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhcc
Confidence 4899999999999999999999999999999998888999999999754
No 98
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=2e-07 Score=86.98 Aligned_cols=58 Identities=36% Similarity=0.388 Sum_probs=50.8
Q ss_pred ccCCCC---CCCHHHHHHHHHHHHHHhCCCCCC------CHHHHHHHHHHHHhhCCccccccccccc
Q 015690 3 FSESRK---NASQDDLKKAYRKAAIKNHPDKGG------DPEKFKELAQAYEVLSDPEKREIYDQYG 60 (402)
Q Consensus 3 iLgv~~---~As~~eIkkAYrklA~k~HPDkn~------~~~kFk~i~~AYevLsd~~kR~~YD~~G 60 (402)
+||+++ -|++.+|.+|.++...+||||+.. ..+-|+.|+.|||||+|+.+|.+||.--
T Consensus 48 ~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d 114 (379)
T COG5269 48 LLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND 114 (379)
T ss_pred HhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence 577775 588999999999999999999962 2488999999999999999999999743
No 99
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.5e-07 Score=84.24 Aligned_cols=54 Identities=31% Similarity=0.559 Sum_probs=48.9
Q ss_pred CcccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHhhCCccccc
Q 015690 1 MRFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP-----EKFKELAQAYEVLSDPEKRE 54 (402)
Q Consensus 1 ~~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~~-----~kFk~i~~AYevLsd~~kR~ 54 (402)
+++|.|.+..|.++||+-||+|++--|||||+|. ..|--+..||..|-|+.-|.
T Consensus 56 feVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rk 114 (250)
T KOG1150|consen 56 FEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRK 114 (250)
T ss_pred HHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 4799999999999999999999999999999974 56999999999999987444
No 100
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.40 E-value=2.7e-07 Score=88.73 Aligned_cols=31 Identities=29% Similarity=0.483 Sum_probs=29.4
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGG 32 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~ 32 (402)
+||||+++||.+|||+|||+|+++||||++.
T Consensus 204 ~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~ 234 (267)
T PRK09430 204 KVLGVSESDDDQEIKRAYRKLMSEHHPDKLV 234 (267)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHhCcCCCC
Confidence 6899999999999999999999999999963
No 101
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=98.37 E-value=5.2e-07 Score=81.42 Aligned_cols=51 Identities=22% Similarity=0.454 Sum_probs=46.2
Q ss_pred eeeCCCCCCcceEEcCCCCCCccCCccEEEEcEEEEEEecCCCcCCCEEecC
Q 015690 173 QHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFP 224 (402)
Q Consensus 173 ~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~ 224 (402)
+.+|+.|+|+|.++...++|+.|+|.|.+..+..+.+++ .|+.+|++|++.
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~ 149 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK 149 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence 567888999999887778999999999999999999999 999999999875
No 102
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=98.36 E-value=2.4e-07 Score=72.77 Aligned_cols=48 Identities=21% Similarity=0.409 Sum_probs=36.4
Q ss_pred EEEEEEecCCCcCCCEEecCCCcCCCC-C-CCCccEEEEEEEecCCCccc
Q 015690 205 KVLEVIVEKGMQNGQKITFPGEADEAP-D-TVTGDIVFVLQQKEHPKFKR 252 (402)
Q Consensus 205 ~~l~V~Ip~G~~~G~~i~~~geG~~~~-g-~~~GDliv~i~v~~h~~f~R 252 (402)
+.++|.||+|+++|++++++|+|.+.. + ...|||||++++.-+..++.
T Consensus 27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~ 76 (81)
T PF01556_consen 27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSP 76 (81)
T ss_dssp -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSH
T ss_pred CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCH
Confidence 467889999999999999999999733 3 37999999999987766553
No 103
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.9e-06 Score=84.23 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=39.5
Q ss_pred cEEEEEEecCC--CcCCCEEecCCCcCCCCCCCCccEEEEEEEecCC
Q 015690 204 KKVLEVIVEKG--MQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHP 248 (402)
Q Consensus 204 ~~~l~V~Ip~G--~~~G~~i~~~geG~~~~g~~~GDliv~i~v~~h~ 248 (402)
...|++.++|| +.+|+++++.|+|++......|||||.+.|+-++
T Consensus 278 Gr~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~~g~lyi~~~v~fp~ 324 (337)
T KOG0712|consen 278 GRLLKLSSKPGEVISPGDTKRVEGEGMPIFRNPKGDLYIKFEVKFPK 324 (337)
T ss_pred CceEEEecCCCceeChhHEEeecCCCcccccCCCCcEEEEEEEEcCC
Confidence 35789999999 9999999999999996555599999999998776
No 104
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=2.9e-06 Score=77.59 Aligned_cols=48 Identities=27% Similarity=0.603 Sum_probs=44.2
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHH-hhCC
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD---PEKFKELAQAYE-VLSD 49 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~---~~kFk~i~~AYe-vLsd 49 (402)
.||||..+|+.+|++.||.+||+++|||...+ .+.|..|.+||. ||+.
T Consensus 51 ril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 51 RILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999764 589999999998 8874
No 105
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=98.06 E-value=3.1e-06 Score=63.84 Aligned_cols=54 Identities=33% Similarity=0.804 Sum_probs=35.5
Q ss_pred ccccccceecceeeeecCCccCCCcccCc----------eeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcc
Q 015690 117 LYNGTSKKLSLSRNVICTKCKGKGSKSGA----------SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTG 183 (402)
Q Consensus 117 ~~~G~~~~~~~~r~~~C~~C~G~G~~~~~----------~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G 183 (402)
.++|...+ .-.....|+.|+|+|..... ..+|+.|+|+|.++ ...+|+.|+|+|
T Consensus 3 ~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i------------~~~~C~~C~G~g 66 (66)
T PF00684_consen 3 KCNGTGAK-PGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII------------EKDPCKTCKGSG 66 (66)
T ss_dssp CCTTTSB--STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-------------TSSB-SSSTTSS
T ss_pred cCCCcccC-CCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE------------CCCCCCCCCCcC
Confidence 35566554 33456799999999986431 26899999999421 278999999986
No 106
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.87 E-value=6.2e-06 Score=84.57 Aligned_cols=27 Identities=33% Similarity=0.849 Sum_probs=14.6
Q ss_pred ecCCccCCCcccCceeeCCCCcCCceE
Q 015690 132 ICTKCKGKGSKSGASMKCSGCQGSGMK 158 (402)
Q Consensus 132 ~C~~C~G~G~~~~~~~~C~~C~G~G~~ 158 (402)
.|+.|+|+|........|+.|+|+|..
T Consensus 4 ~C~~C~g~G~i~v~~e~c~vc~gtG~~ 30 (715)
T COG1107 4 KCPECGGKGKIVVGEEECPVCHGTGFS 30 (715)
T ss_pred cccccCCCceEeeeeeecccccccccc
Confidence 455555555554444555555555544
No 107
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=5.1e-05 Score=72.65 Aligned_cols=60 Identities=32% Similarity=0.757 Sum_probs=42.2
Q ss_pred eeecCCccCCCcccC--------------------ceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCC
Q 015690 130 NVICTKCKGKGSKSG--------------------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 189 (402)
Q Consensus 130 ~~~C~~C~G~G~~~~--------------------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~ 189 (402)
.+.|+.|+|.|..+. ....|..|+|+| ..+|+.|+|+|.
T Consensus 198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G----------------~~~C~tC~grG~----- 256 (406)
T KOG2813|consen 198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRG----------------IKECHTCKGRGK----- 256 (406)
T ss_pred ceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCC----------------cccCCcccCCCC-----
Confidence 567999999984221 113466677777 357888888885
Q ss_pred CCCCccCCccEEEEcEEEEEE
Q 015690 190 DRCPQCKGEKVIQEKKVLEVI 210 (402)
Q Consensus 190 ~~C~~C~G~g~~~~~~~l~V~ 210 (402)
.+|.+|.|.|.+.....+.|.
T Consensus 257 k~C~TC~gtgsll~~t~~vV~ 277 (406)
T KOG2813|consen 257 KPCTTCSGTGSLLNYTRIVVY 277 (406)
T ss_pred cccccccCccceeeeEEEEEE
Confidence 688999998887777666655
No 108
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=97.48 E-value=0.00048 Score=73.58 Aligned_cols=64 Identities=41% Similarity=0.729 Sum_probs=59.8
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHhhCCcccccccccccccccc
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALK 65 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~~---~kFk~i~~AYevLsd~~kR~~YD~~G~~~~~ 65 (402)
+||||+++|+.++||+|||+||++||||+++++ ++|++|++||++||||.+|+.||+||..++.
T Consensus 6 eVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d 72 (871)
T TIGR03835 6 EVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD 72 (871)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence 699999999999999999999999999999753 6899999999999999999999999987654
No 109
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=97.24 E-value=0.00027 Score=58.58 Aligned_cols=49 Identities=31% Similarity=0.696 Sum_probs=37.2
Q ss_pred cccccccceecceeeeecCCccCCCcccC----c---eeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEc
Q 015690 116 DLYNGTSKKLSLSRNVICTKCKGKGSKSG----A---SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN 187 (402)
Q Consensus 116 e~~~G~~~~~~~~r~~~C~~C~G~G~~~~----~---~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~ 187 (402)
..|+|+.. ..|+.|+|+|.... . ..+|+.|+|+|. .+|+.|.|+|.+.+
T Consensus 45 ~~C~GsG~-------~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk----------------~~C~~C~G~G~~~~ 100 (111)
T PLN03165 45 FPCSGTGA-------QVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGS----------------LTCTTCQGSGIQPR 100 (111)
T ss_pred CCCCCCCC-------cCCCCCcCcCeEEEEeCCcEEEEEECCCCCCcce----------------eeCCCCCCCEEEee
Confidence 45667665 27999999997532 1 258999999992 35999999998754
No 110
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.06 E-value=0.00053 Score=70.79 Aligned_cols=56 Identities=30% Similarity=0.726 Sum_probs=38.9
Q ss_pred cccccceecceeeeecCCccCCCcccC------c-------------eeeCCCCcCCceEEEEEecCCceeeEeeeeCCC
Q 015690 118 YNGTSKKLSLSRNVICTKCKGKGSKSG------A-------------SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNE 178 (402)
Q Consensus 118 ~~G~~~~~~~~r~~~C~~C~G~G~~~~------~-------------~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~ 178 (402)
|.|+.+. .+ ....|+.|+|+|.... . ..+|+.|+|.|.+. ...+|+.
T Consensus 8 C~g~G~i-~v-~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~------------v~~~c~~ 73 (715)
T COG1107 8 CGGKGKI-VV-GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVT------------VYDTCPE 73 (715)
T ss_pred cCCCceE-ee-eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEE------------EEeeccc
Confidence 5554433 22 2456999999997532 0 14799999999653 3578999
Q ss_pred CCCcceEEc
Q 015690 179 CKGTGETIN 187 (402)
Q Consensus 179 C~G~G~~~~ 187 (402)
|.|+|.+..
T Consensus 74 c~G~gkv~~ 82 (715)
T COG1107 74 CGGTGKVLT 82 (715)
T ss_pred CCCceeEEe
Confidence 999998854
No 111
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0013 Score=63.20 Aligned_cols=77 Identities=29% Similarity=0.707 Sum_probs=45.4
Q ss_pred cccccccceecceee---eecCCccCCCcccCceeeCCCCcCCce--------EEEEEecC-CceeeEeeeeCCCCCCcc
Q 015690 116 DLYNGTSKKLSLSRN---VICTKCKGKGSKSGASMKCSGCQGSGM--------KVSIRHLG-PSMIQQMQHPCNECKGTG 183 (402)
Q Consensus 116 e~~~G~~~~~~~~r~---~~C~~C~G~G~~~~~~~~C~~C~G~G~--------~~~~~~~g-pg~~~~~~~~C~~C~G~G 183 (402)
.++.|-..++.+... ..|..|.|.|. ..|+.|+|.|. +.-+.-.| |---......|..|+|+|
T Consensus 170 ~mf~~~~~~~~vphs~~v~~ch~c~gRG~-----~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G 244 (406)
T KOG2813|consen 170 GMFSGVAHPAVVPHSMIVTFCHACLGRGA-----MVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRG 244 (406)
T ss_pred CcccccccceeccchHhhhhhhcccCCCc-----eeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCC
Confidence 344444444444433 46999999994 68999999993 11111111 000001235577888888
Q ss_pred eEEcCCCCCCccCCccEEE
Q 015690 184 ETINDKDRCPQCKGEKVIQ 202 (402)
Q Consensus 184 ~~~~~~~~C~~C~G~g~~~ 202 (402)
. ..|.+|+|+|.+.
T Consensus 245 ~-----~~C~tC~grG~k~ 258 (406)
T KOG2813|consen 245 I-----KECHTCKGRGKKP 258 (406)
T ss_pred c-----ccCCcccCCCCcc
Confidence 5 6788888887543
No 112
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=95.85 E-value=0.011 Score=50.37 Aligned_cols=50 Identities=22% Similarity=0.328 Sum_probs=39.0
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhCCcc
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPE 51 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~~~kFk~i~~AYevLsd~~ 51 (402)
.||+|++.++.++|.+.|.+|-...+|+++++.-.=.+|..|.|.|..+-
T Consensus 62 ~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 62 QILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999998777778899999886443
No 113
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=95.85 E-value=0.005 Score=55.81 Aligned_cols=29 Identities=28% Similarity=0.765 Sum_probs=15.5
Q ss_pred eeecCCccCCCcccCceeeCCCCcCCceE
Q 015690 130 NVICTKCKGKGSKSGASMKCSGCQGSGMK 158 (402)
Q Consensus 130 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~ 158 (402)
...|+.|+|+|.......+|+.|+|+|.+
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v 127 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRF 127 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEE
Confidence 45566666666543322445555555544
No 114
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=0.019 Score=51.68 Aligned_cols=46 Identities=37% Similarity=0.530 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHHhhCCccccccccc
Q 015690 13 DDLKKAYRKAAIKNHPDKGGDP---------EKFKELAQAYEVLSDPEKREIYDQ 58 (402)
Q Consensus 13 ~eIkkAYrklA~k~HPDkn~~~---------~kFk~i~~AYevLsd~~kR~~YD~ 58 (402)
+.++..|+.+++.||||+.... +.+..++.||.+|.||-+|+.|=.
T Consensus 18 ~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 18 DALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred hHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3578899999999999997631 578999999999999999998753
No 115
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=0.076 Score=46.33 Aligned_cols=47 Identities=40% Similarity=0.587 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCC--C-------HHHHHHHHHHHHhhCCccccccccc
Q 015690 12 QDDLKKAYRKAAIKNHPDKGG--D-------PEKFKELAQAYEVLSDPEKREIYDQ 58 (402)
Q Consensus 12 ~~eIkkAYrklA~k~HPDkn~--~-------~~kFk~i~~AYevLsd~~kR~~YD~ 58 (402)
++-.+--|--..++.|||+.. + .+.-.++|+||..|.||-+|+.|=.
T Consensus 24 p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 24 PDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred cchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333444677778999999843 1 2668899999999999999998853
No 116
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=91.35 E-value=0.18 Score=50.07 Aligned_cols=51 Identities=41% Similarity=0.694 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCC--------CHHHHHHHHHHHHhhCCcccccccccc
Q 015690 9 NASQDDLKKAYRKAAIKNHPDKGG--------DPEKFKELAQAYEVLSDPEKREIYDQY 59 (402)
Q Consensus 9 ~As~~eIkkAYrklA~k~HPDkn~--------~~~kFk~i~~AYevLsd~~kR~~YD~~ 59 (402)
-++..+|..+|+..++++||++-. .++-|++|.+||+||++.++|..+|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 367889999999999999999863 247899999999999997776666653
No 117
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=90.56 E-value=0.52 Score=43.22 Aligned_cols=38 Identities=18% Similarity=0.369 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhC
Q 015690 7 RKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLS 48 (402)
Q Consensus 7 ~~~As~~eIkkAYrklA~k~HPDkn~~~~kFk~i~~AYevLs 48 (402)
+++||.+||.+|+.+|-.+| ..|++.-.+|-.||+.+-
T Consensus 1 S~~ASfeEIq~Arn~ll~~y----~gd~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQY----AGDEKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Confidence 68999999999999999998 456677788999998543
No 118
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.44 E-value=0.1 Score=47.00 Aligned_cols=47 Identities=34% Similarity=0.429 Sum_probs=38.3
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhhC
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGD-PEKFKELAQAYEVLS 48 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~-~~kFk~i~~AYevLs 48 (402)
.+|+|...++..+|+++||++..++|||+--. ..+-+-+..|-+.+.
T Consensus 117 ~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~ 164 (174)
T COG1076 117 KVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQ 164 (174)
T ss_pred HHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHH
Confidence 58999999999999999999999999998643 256666666666554
No 119
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=89.26 E-value=0.21 Score=51.67 Aligned_cols=24 Identities=46% Similarity=0.634 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC
Q 015690 10 ASQDDLKKAYRKAAIKNHPDKGGD 33 (402)
Q Consensus 10 As~~eIkkAYrklA~k~HPDkn~~ 33 (402)
.|.++|||||||..|.-||||-+.
T Consensus 400 Vtp~~VKKaYrKA~L~VHPDKlqq 423 (453)
T KOG0431|consen 400 VTPAQVKKAYRKAVLCVHPDKLQQ 423 (453)
T ss_pred cCHHHHHHHHHhhhheeCcccccC
Confidence 478899999999999999999763
No 120
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.25 E-value=0.2 Score=48.88 Aligned_cols=59 Identities=25% Similarity=0.615 Sum_probs=42.3
Q ss_pred ccccccccceecceeeeecCCccCCCcccC-----ce-eeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEc
Q 015690 115 EDLYNGTSKKLSLSRNVICTKCKGKGSKSG-----AS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN 187 (402)
Q Consensus 115 ee~~~G~~~~~~~~r~~~C~~C~G~G~~~~-----~~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~ 187 (402)
.+.|.|...+ .......|..|.|+|.... -. .+|..|+|.|.+ ....|..|.|.|.+..
T Consensus 167 ~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~-------------~~~~c~~~~g~~~v~~ 231 (288)
T KOG0715|consen 167 CETCFGSGAE-EGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLV-------------LRDNCQACSGAGQVRR 231 (288)
T ss_pred cccccCcCcc-cccccccchhhhCcccccccccCCcceeeccccccccee-------------ccchHHHhhcchhhhh
Confidence 3566666644 6667789999999994332 11 369999999953 2344999999996654
No 121
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.73 E-value=0.52 Score=45.01 Aligned_cols=51 Identities=31% Similarity=0.666 Sum_probs=33.3
Q ss_pred eecCCccCCCcccCceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccC
Q 015690 131 VICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCK 196 (402)
Q Consensus 131 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~ 196 (402)
..|..|.|.+. ..|..|+|+=.+... -.. ......|..|+-.|.+ +|+.|.
T Consensus 230 ~~C~~CGg~rF-----lpC~~C~GS~kv~~~--~~~---~~~~~rC~~CNENGLv-----rCp~Cs 280 (281)
T KOG2824|consen 230 GVCESCGGARF-----LPCSNCHGSCKVHEE--EED---DGGVLRCLECNENGLV-----RCPVCS 280 (281)
T ss_pred CcCCCcCCcce-----EecCCCCCceeeeee--ccC---CCcEEECcccCCCCce-----eCCccC
Confidence 46777777664 578899988765442 111 1123678899888874 688875
No 122
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=87.52 E-value=0.47 Score=41.50 Aligned_cols=24 Identities=33% Similarity=0.733 Sum_probs=14.7
Q ss_pred eecCCccCCCcccCceeeCCCCcCCceEE
Q 015690 131 VICTKCKGKGSKSGASMKCSGCQGSGMKV 159 (402)
Q Consensus 131 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~ 159 (402)
..|..|.|.+. .+|..|+|+=.++
T Consensus 100 ~~C~~Cgg~rf-----v~C~~C~Gs~k~~ 123 (147)
T cd03031 100 GVCEGCGGARF-----VPCSECNGSCKVF 123 (147)
T ss_pred CCCCCCCCcCe-----EECCCCCCcceEE
Confidence 34777766654 4577777766543
No 123
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.53 E-value=1.1 Score=50.54 Aligned_cols=20 Identities=40% Similarity=0.438 Sum_probs=12.8
Q ss_pred EeCCCC-CCHHHHHHHHhhCC
Q 015690 325 VDFPES-LSPDQCKMLETVLP 344 (402)
Q Consensus 325 V~~P~~-l~~~~~~~l~~~l~ 344 (402)
++=|.. |++..+..|.++|.
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~ 875 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQ 875 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHH
Confidence 345665 88777766666653
No 124
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=78.59 E-value=2.3 Score=46.71 Aligned_cols=33 Identities=33% Similarity=0.784 Sum_probs=20.4
Q ss_pred eCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcce
Q 015690 148 KCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGE 184 (402)
Q Consensus 148 ~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~ 184 (402)
.|..|.|.|++.....+-| .+-.+|+.|+|+-+
T Consensus 732 RCe~C~GdG~ikIeM~FLp----dVyv~CevC~GkRY 764 (935)
T COG0178 732 RCEACQGDGVIKIEMHFLP----DVYVPCEVCHGKRY 764 (935)
T ss_pred CCccccCCceEEEEeccCC----CceeeCCCcCCccc
Confidence 5888888887666555444 23456666666544
No 125
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.63 E-value=2 Score=41.14 Aligned_cols=40 Identities=25% Similarity=0.754 Sum_probs=30.4
Q ss_pred eeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEc------CCCCCCccCCccEEE
Q 015690 147 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN------DKDRCPQCKGEKVIQ 202 (402)
Q Consensus 147 ~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~g~~~ 202 (402)
..|..|.|.++ .+|..|+|+-++.. .-.+|..|+=.|.+.
T Consensus 230 ~~C~~CGg~rF----------------lpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr 275 (281)
T KOG2824|consen 230 GVCESCGGARF----------------LPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVR 275 (281)
T ss_pred CcCCCcCCcce----------------EecCCCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence 46899998884 48999999988775 124788888777654
No 126
>PF13446 RPT: A repeated domain in UCH-protein
Probab=77.01 E-value=3.8 Score=30.04 Aligned_cols=41 Identities=17% Similarity=0.313 Sum_probs=30.3
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhCC
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSD 49 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~~~kFk~i~~AYevLsd 49 (402)
++|||+++++++.|-.+|+.... . +|.......+|-.++.+
T Consensus 9 ~~Lgi~~~~~Dd~Ii~~f~~~~~-----~--~P~~~~~~r~AL~~Ia~ 49 (62)
T PF13446_consen 9 EILGIDEDTDDDFIISAFQSKVN-----D--DPSQKDTLREALRVIAE 49 (62)
T ss_pred HHhCcCCCCCHHHHHHHHHHHHH-----c--ChHhHHHHHHHHHHHHH
Confidence 57999999999999999998765 2 23455555666666653
No 127
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=73.54 E-value=12 Score=33.12 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=14.2
Q ss_pred EEEEEecCCCcCCCEEecCC
Q 015690 206 VLEVIVEKGMQNGQKITFPG 225 (402)
Q Consensus 206 ~l~V~Ip~G~~~G~~i~~~g 225 (402)
.|.+.||||...|..-++.|
T Consensus 81 El~~ei~pg~~~g~itTVEG 100 (160)
T smart00709 81 ELDLEIPPGPLGGFITTVEG 100 (160)
T ss_pred eeeEEecCCCCCcEEEehHH
Confidence 56777888887777666654
No 128
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=73.20 E-value=3 Score=47.23 Aligned_cols=33 Identities=36% Similarity=0.819 Sum_probs=18.4
Q ss_pred eCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcce
Q 015690 148 KCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGE 184 (402)
Q Consensus 148 ~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~ 184 (402)
.|+.|.|.|++....+.-+. +..+|+.|+|+..
T Consensus 740 ~C~~C~G~G~~~~~~~f~~~----~~~~C~~C~G~R~ 772 (943)
T PRK00349 740 RCEACQGDGVIKIEMHFLPD----VYVPCDVCKGKRY 772 (943)
T ss_pred CCCcccccceEEEEeccCCC----ccccCccccCccc
Confidence 48888888876654443331 2345555555543
No 129
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=71.19 E-value=5.5 Score=45.74 Aligned_cols=62 Identities=19% Similarity=0.468 Sum_probs=37.5
Q ss_pred cccceecceeeeecCCccCCCcccCceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcC---CCCCCccC
Q 015690 120 GTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIND---KDRCPQCK 196 (402)
Q Consensus 120 G~~~~~~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~---~~~C~~C~ 196 (402)
+....+.+. ...|+.|...... ..|+.|...=. ....|+.|+.. +... ...|+.|.
T Consensus 658 ~G~ieVEV~-~rkCPkCG~~t~~----~fCP~CGs~te--------------~vy~CPsCGae--v~~des~a~~CP~CG 716 (1337)
T PRK14714 658 GGVIEVEVG-RRRCPSCGTETYE----NRCPDCGTHTE--------------PVYVCPDCGAE--VPPDESGRVECPRCD 716 (1337)
T ss_pred CCeEEEEEE-EEECCCCCCcccc----ccCcccCCcCC--------------CceeCccCCCc--cCCCccccccCCCCC
Confidence 333344443 4789999775432 38999987641 12379999874 1110 23899998
Q ss_pred CccEEE
Q 015690 197 GEKVIQ 202 (402)
Q Consensus 197 G~g~~~ 202 (402)
..-+..
T Consensus 717 tplv~~ 722 (1337)
T PRK14714 717 VELTPY 722 (1337)
T ss_pred Cccccc
Confidence 764333
No 130
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=70.24 E-value=5.5 Score=34.85 Aligned_cols=39 Identities=33% Similarity=0.982 Sum_probs=31.0
Q ss_pred eeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCC-------CCCCccCCccEE
Q 015690 147 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK-------DRCPQCKGEKVI 201 (402)
Q Consensus 147 ~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~-------~~C~~C~G~g~~ 201 (402)
..|..|.|.++ .+|..|+|+-+++... .+|+.|+=.|.+
T Consensus 100 ~~C~~Cgg~rf----------------v~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~ 145 (147)
T cd03031 100 GVCEGCGGARF----------------VPCSECNGSCKVFAENATAAGGFLRCPECNENGLV 145 (147)
T ss_pred CCCCCCCCcCe----------------EECCCCCCcceEEeccCcccccEEECCCCCccccc
Confidence 46999999984 4899999998887654 489999877654
No 131
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=69.31 E-value=3 Score=50.09 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=18.3
Q ss_pred CcEEEEEEEeCCCC-CCHHHHHHHHhhCC
Q 015690 317 GKLYIHFTVDFPES-LSPDQCKMLETVLP 344 (402)
Q Consensus 317 GdL~i~~~V~~P~~-l~~~~~~~l~~~l~ 344 (402)
..||| .+=|.+ |.+.+.+.|-++|.
T Consensus 1721 ~~lyi---lDEPt~GLh~~d~~~Ll~~l~ 1746 (1809)
T PRK00635 1721 PTLFL---LDEIATSLDNQQKSALLVQLR 1746 (1809)
T ss_pred CcEEE---EcCCCCCCCHHHHHHHHHHHH
Confidence 47776 466877 99988877777753
No 132
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=68.21 E-value=11 Score=34.48 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=21.8
Q ss_pred eCCCCcCCceEEEEEec-C--CceeeEeeeeCCCCCCc
Q 015690 148 KCSGCQGSGMKVSIRHL-G--PSMIQQMQHPCNECKGT 182 (402)
Q Consensus 148 ~C~~C~G~G~~~~~~~~-g--pg~~~~~~~~C~~C~G~ 182 (402)
.|+.|++.|........ = ++-+-.+...|+.|+=+
T Consensus 2 ~Cp~C~~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr 39 (192)
T TIGR00310 2 DCPSCGGECETVMKTVNDIPYFGEVLETSTICEHCGYR 39 (192)
T ss_pred cCCCCCCCCEEEEEEEcCCCCcceEEEEEEECCCCCCc
Confidence 47777777765333333 2 34455667889999766
No 133
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=66.26 E-value=6.6 Score=23.93 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhC
Q 015690 12 QDDLKKAYRKAAIKNH 27 (402)
Q Consensus 12 ~~eIkkAYrklA~k~H 27 (402)
.++.|.+-|+.|+.||
T Consensus 10 ~~~~r~~lR~AALeYH 25 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYH 25 (28)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 4678899999999999
No 134
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=65.86 E-value=4 Score=20.89 Aligned_cols=13 Identities=54% Similarity=0.851 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhhC
Q 015690 36 KFKELAQAYEVLS 48 (402)
Q Consensus 36 kFk~i~~AYevLs 48 (402)
+|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 6888999999875
No 135
>PRK04023 DNA polymerase II large subunit; Validated
Probab=64.55 E-value=4.7 Score=45.24 Aligned_cols=67 Identities=16% Similarity=0.346 Sum_probs=41.8
Q ss_pred cccccc-cccceecceeeeecCCccCCCcccCceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCC
Q 015690 114 LEDLYN-GTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRC 192 (402)
Q Consensus 114 lee~~~-G~~~~~~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C 192 (402)
+.+++. +....+.+. ...|+.|.-.+ ....|+.|+..-. ....|+.|.-... ...|
T Consensus 610 i~~A~~~~g~~eVEVg-~RfCpsCG~~t----~~frCP~CG~~Te--------------~i~fCP~CG~~~~----~y~C 666 (1121)
T PRK04023 610 INKAAKYKGTIEVEIG-RRKCPSCGKET----FYRRCPFCGTHTE--------------PVYRCPRCGIEVE----EDEC 666 (1121)
T ss_pred HHHHHhcCCceeeccc-CccCCCCCCcC----CcccCCCCCCCCC--------------cceeCccccCcCC----CCcC
Confidence 446665 455554444 35799997664 3368999987621 1347999954433 3679
Q ss_pred CccCCccEEEE
Q 015690 193 PQCKGEKVIQE 203 (402)
Q Consensus 193 ~~C~G~g~~~~ 203 (402)
++|.-.-....
T Consensus 667 PKCG~El~~~s 677 (1121)
T PRK04023 667 EKCGREPTPYS 677 (1121)
T ss_pred CCCCCCCCccc
Confidence 99987744433
No 136
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.48 E-value=3.4 Score=46.68 Aligned_cols=11 Identities=45% Similarity=1.147 Sum_probs=6.3
Q ss_pred CCCCcCCceEE
Q 015690 149 CSGCQGSGMKV 159 (402)
Q Consensus 149 C~~C~G~G~~~ 159 (402)
|+.|.|.|++.
T Consensus 739 C~~C~G~G~~~ 749 (924)
T TIGR00630 739 CEACQGDGVIK 749 (924)
T ss_pred CCCCccceEEE
Confidence 66666666544
No 137
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=60.96 E-value=9 Score=31.37 Aligned_cols=52 Identities=27% Similarity=0.520 Sum_probs=36.3
Q ss_pred CCCCCCCHH-HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhCCcccccccc-cccc
Q 015690 5 ESRKNASQD-DLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYD-QYGE 61 (402)
Q Consensus 5 gv~~~As~~-eIkkAYrklA~k~HPDkn~~~~kFk~i~~AYevLsd~~kR~~YD-~~G~ 61 (402)
|++|++... +|-+.++.+...+++ .+++.+..|...| +.||.-++.|| .++.
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~---~~~~~~~~l~~~y--~~~~~~~~~~~~~~~~ 104 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTG---GDPELLRGLAQMY--VEDPRFAAMYDKKFGP 104 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS------HHHHHHHHHHT--TSTHHHHHHHG-GGST
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHH--HcCHHHHhhccccCCH
Confidence 566665443 577778888887776 5678999999999 78999999999 6654
No 138
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=55.24 E-value=14 Score=40.58 Aligned_cols=61 Identities=25% Similarity=0.573 Sum_probs=38.8
Q ss_pred ccccceeccee-----eeecCCccCCCcccCceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCC
Q 015690 119 NGTSKKLSLSR-----NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCP 193 (402)
Q Consensus 119 ~G~~~~~~~~r-----~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~ 193 (402)
.|...-+-++| .+.|..|. ....|+.|...= ..++.. -+-.|..|+-...+ -..|+
T Consensus 419 ~geQ~llflnRRGys~~l~C~~Cg-------~v~~Cp~Cd~~l---t~H~~~------~~L~CH~Cg~~~~~---p~~Cp 479 (730)
T COG1198 419 RGEQVLLFLNRRGYAPLLLCRDCG-------YIAECPNCDSPL---TLHKAT------GQLRCHYCGYQEPI---PQSCP 479 (730)
T ss_pred cCCeEEEEEccCCccceeecccCC-------CcccCCCCCcce---EEecCC------CeeEeCCCCCCCCC---CCCCC
Confidence 34444444444 47899994 346899999762 222211 25679999877433 37999
Q ss_pred ccCCc
Q 015690 194 QCKGE 198 (402)
Q Consensus 194 ~C~G~ 198 (402)
.|.+.
T Consensus 480 ~Cgs~ 484 (730)
T COG1198 480 ECGSE 484 (730)
T ss_pred CCCCC
Confidence 99887
No 139
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=51.49 E-value=6.3 Score=44.73 Aligned_cols=28 Identities=25% Similarity=0.615 Sum_probs=22.4
Q ss_pred eecCCccCCCcccCc-------eeeCCCCcCCceE
Q 015690 131 VICTKCKGKGSKSGA-------SMKCSGCQGSGMK 158 (402)
Q Consensus 131 ~~C~~C~G~G~~~~~-------~~~C~~C~G~G~~ 158 (402)
-.|+.|.|.|..... ..+|+.|+|+.+.
T Consensus 739 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~ 773 (943)
T PRK00349 739 GRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYN 773 (943)
T ss_pred CCCCcccccceEEEEeccCCCccccCccccCcccc
Confidence 469999999986531 2689999999974
No 140
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=51.36 E-value=31 Score=28.71 Aligned_cols=43 Identities=30% Similarity=0.340 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCC---CC-----HHHHHHHHHHHHhhCCc
Q 015690 8 KNASQDDLKKAYRKAAIKNHPDKG---GD-----PEKFKELAQAYEVLSDP 50 (402)
Q Consensus 8 ~~As~~eIkkAYrklA~k~HPDkn---~~-----~~kFk~i~~AYevLsd~ 50 (402)
+..+..++++|.|.+-++-|||.- |. ++-+|.++.-.+.|..+
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 456788999999999999999963 32 25677777777777644
No 141
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=50.76 E-value=16 Score=36.52 Aligned_cols=23 Identities=48% Similarity=1.040 Sum_probs=16.8
Q ss_pred eeeecCCccCCCcccCceeeCCCCcCCceEE
Q 015690 129 RNVICTKCKGKGSKSGASMKCSGCQGSGMKV 159 (402)
Q Consensus 129 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~ 159 (402)
..+.|..|+|.| |+.|++.|++-
T Consensus 259 vdv~~~~~~g~g--------c~~ck~~~WiE 281 (339)
T PRK00488 259 VDVSCFKCGGKG--------CRVCKGTGWLE 281 (339)
T ss_pred EEEEEeccCCCc--------ccccCCCCceE
Confidence 346788888766 77888888653
No 142
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=50.51 E-value=25 Score=24.88 Aligned_cols=11 Identities=27% Similarity=0.724 Sum_probs=7.3
Q ss_pred eCCCCcCCceE
Q 015690 148 KCSGCQGSGMK 158 (402)
Q Consensus 148 ~C~~C~G~G~~ 158 (402)
+||.|.|....
T Consensus 3 PCPfCGg~~~~ 13 (53)
T TIGR03655 3 PCPFCGGADVY 13 (53)
T ss_pred CCCCCCCccee
Confidence 57777776653
No 143
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=50.02 E-value=7.1 Score=40.07 Aligned_cols=27 Identities=26% Similarity=0.554 Sum_probs=19.2
Q ss_pred EEecCCceeeEeeeeCCCCCCcceEEc
Q 015690 161 IRHLGPSMIQQMQHPCNECKGTGETIN 187 (402)
Q Consensus 161 ~~~~gpg~~~~~~~~C~~C~G~G~~~~ 187 (402)
.++.++.+......+|+.|+|+|.+..
T Consensus 378 Rkr~~~sL~e~~~~~Cp~C~G~G~v~s 404 (414)
T TIGR00757 378 RKRLRESLMEVLGTVCPHCSGTGIVKT 404 (414)
T ss_pred ccccCcChHHHhcCCCCCCcCeeEEcc
Confidence 334556666677788999988888753
No 144
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=49.91 E-value=92 Score=28.62 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcCCCEEec-CCCcCCCCCCCCccEE
Q 015690 205 KVLEVIVEKGMQNGQKITF-PGEADEAPDTVTGDIV 239 (402)
Q Consensus 205 ~~l~V~Ip~G~~~G~~i~~-~geG~~~~g~~~GDli 239 (402)
..++|.|..-...|.-|.- .|.---.++..|||.+
T Consensus 149 e~~~v~Ie~l~~~G~GVak~~g~~vfV~galpGE~V 184 (201)
T PRK12336 149 KTYEVEITGTGRKGDGVAKKGKYTIFVPGAKKGEVV 184 (201)
T ss_pred CEEEEEEEEccCCCceEEEECCEEEEeCCCCCCCEE
Confidence 3456667666666666542 2211125677888875
No 145
>PF12991 DUF3875: Domain of unknown function, B. Theta Gene description (DUF3875); InterPro: IPR024451 This domain of unknown function is found in proteins from Bacteroidetes, including the conjugation system ATPase, TraG.
Probab=49.26 E-value=21 Score=25.60 Aligned_cols=25 Identities=28% Similarity=0.579 Sum_probs=19.8
Q ss_pred CCCcEEEEEEEeCCCC--CCHHHHHHH
Q 015690 315 MRGKLYIHFTVDFPES--LSPDQCKML 339 (402)
Q Consensus 315 ~~GdL~i~~~V~~P~~--l~~~~~~~l 339 (402)
..||+.|-|+|.+|+- +|.++.+.|
T Consensus 26 k~gDiTv~f~v~LPEiFtls~~eYea~ 52 (54)
T PF12991_consen 26 KNGDITVAFRVELPEIFTLSEAEYEAI 52 (54)
T ss_pred cCCCEEEEEEecCCeeEEechhHhHHh
Confidence 4699999999999997 566665543
No 146
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=47.57 E-value=8.7 Score=46.37 Aligned_cols=34 Identities=29% Similarity=0.578 Sum_probs=25.4
Q ss_pred eCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceE
Q 015690 148 KCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 185 (402)
Q Consensus 148 ~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 185 (402)
.|+.|.|.|++....+.- --+..+|+.|+|+.+-
T Consensus 1609 rC~~C~G~G~i~i~m~fl----~dv~~~C~~C~G~R~~ 1642 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDRAFY----ALEKRPCPTCSGFRIQ 1642 (1809)
T ss_pred CCCCCccCceEEEecccC----CCcccCCCCCCCcCCC
Confidence 599999999865544433 3457899999999875
No 147
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.94 E-value=19 Score=38.01 Aligned_cols=52 Identities=25% Similarity=0.600 Sum_probs=32.9
Q ss_pred eeecCCccCCCcccCceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccE
Q 015690 130 NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKV 200 (402)
Q Consensus 130 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~ 200 (402)
.+.|..|. ....|+.|.+.= +.. +. ...-.|..|+-+- ..-..|+.|.+...
T Consensus 213 ~~~C~~Cg-------~~~~C~~C~~~l-~~h-~~-------~~~l~Ch~Cg~~~---~~~~~Cp~C~s~~l 264 (505)
T TIGR00595 213 NLLCRSCG-------YILCCPNCDVSL-TYH-KK-------EGKLRCHYCGYQE---PIPKTCPQCGSEDL 264 (505)
T ss_pred eeEhhhCc-------CccCCCCCCCce-EEe-cC-------CCeEEcCCCcCcC---CCCCCCCCCCCCee
Confidence 36899994 346799998642 211 11 1246799997443 33479999988643
No 148
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=44.16 E-value=29 Score=34.13 Aligned_cols=11 Identities=18% Similarity=0.625 Sum_probs=7.2
Q ss_pred eeeecCCccCC
Q 015690 129 RNVICTKCKGK 139 (402)
Q Consensus 129 r~~~C~~C~G~ 139 (402)
....||.|.+.
T Consensus 186 ~~~~CPvCGs~ 196 (309)
T PRK03564 186 QRQFCPVCGSM 196 (309)
T ss_pred CCCCCCCCCCc
Confidence 34568888665
No 149
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=41.73 E-value=12 Score=41.36 Aligned_cols=28 Identities=25% Similarity=0.609 Sum_probs=22.2
Q ss_pred eecCCccCCCcccC-------ceeeCCCCcCCceE
Q 015690 131 VICTKCKGKGSKSG-------ASMKCSGCQGSGMK 158 (402)
Q Consensus 131 ~~C~~C~G~G~~~~-------~~~~C~~C~G~G~~ 158 (402)
-.|..|+|.|...- ...+|..|+|+-+-
T Consensus 731 GRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn 765 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYN 765 (935)
T ss_pred cCCccccCCceEEEEeccCCCceeeCCCcCCcccc
Confidence 46999999998542 22799999999864
No 150
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=41.34 E-value=19 Score=39.17 Aligned_cols=49 Identities=29% Similarity=0.738 Sum_probs=31.1
Q ss_pred eecCCccCCCcccCceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCc
Q 015690 131 VICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGE 198 (402)
Q Consensus 131 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~ 198 (402)
..|+.|+-.= ......|+.|...- ....|+.|+-. +......|+.|...
T Consensus 2 ~~Cp~Cg~~n--~~~akFC~~CG~~l---------------~~~~Cp~CG~~--~~~~~~fC~~CG~~ 50 (645)
T PRK14559 2 LICPQCQFEN--PNNNRFCQKCGTSL---------------THKPCPQCGTE--VPVDEAHCPNCGAE 50 (645)
T ss_pred CcCCCCCCcC--CCCCccccccCCCC---------------CCCcCCCCCCC--CCcccccccccCCc
Confidence 4699996542 12236799994432 02479999765 23345799999766
No 151
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=40.61 E-value=26 Score=29.14 Aligned_cols=28 Identities=18% Similarity=0.464 Sum_probs=13.1
Q ss_pred eeeecCCccCCCcccCceeeCCCCcCCc
Q 015690 129 RNVICTKCKGKGSKSGASMKCSGCQGSG 156 (402)
Q Consensus 129 r~~~C~~C~G~G~~~~~~~~C~~C~G~G 156 (402)
....|..|+...........||.|++..
T Consensus 69 ~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PRK12380 69 AQAWCWDCSQVVEIHQHDAQCPHCHGER 96 (113)
T ss_pred cEEEcccCCCEEecCCcCccCcCCCCCC
Confidence 3456777764433322223355555444
No 152
>PRK05580 primosome assembly protein PriA; Validated
Probab=40.57 E-value=31 Score=37.84 Aligned_cols=51 Identities=22% Similarity=0.624 Sum_probs=32.8
Q ss_pred eeecCCccCCCcccCceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCcc
Q 015690 130 NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEK 199 (402)
Q Consensus 130 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g 199 (402)
.+.|..|. ....|+.|.+ .++.. . ....-.|..|+-+-. ....|+.|.+..
T Consensus 381 ~~~C~~Cg-------~~~~C~~C~~-~l~~h-~-------~~~~l~Ch~Cg~~~~---~~~~Cp~Cg~~~ 431 (679)
T PRK05580 381 FLLCRDCG-------WVAECPHCDA-SLTLH-R-------FQRRLRCHHCGYQEP---IPKACPECGSTD 431 (679)
T ss_pred ceEhhhCc-------CccCCCCCCC-ceeEE-C-------CCCeEECCCCcCCCC---CCCCCCCCcCCe
Confidence 47899984 3357999997 32221 1 112457999975533 347899998874
No 153
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=40.55 E-value=9.2 Score=42.23 Aligned_cols=53 Identities=25% Similarity=0.559 Sum_probs=0.0
Q ss_pred eeecCCccCCCcccCceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCCccCCccEEEEc
Q 015690 130 NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEK 204 (402)
Q Consensus 130 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~ 204 (402)
...|+.|.-... ...|+.|.+.= ...-.|+.|+-.- ..+.|++|.-.......
T Consensus 655 ~r~Cp~Cg~~t~----~~~Cp~CG~~T--------------~~~~~Cp~C~~~~----~~~~C~~C~~~~~~~~~ 707 (900)
T PF03833_consen 655 RRRCPKCGKETF----YNRCPECGSHT--------------EPVYVCPDCGIEV----EEDECPKCGRETTSYSK 707 (900)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCcccCCcch----hhcCcccCCcc--------------ccceecccccccc----CccccccccccCcccce
Confidence 356888854432 25788887543 2245688886432 24689999776444333
No 154
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=40.49 E-value=60 Score=28.88 Aligned_cols=20 Identities=25% Similarity=0.369 Sum_probs=13.1
Q ss_pred EEEEEecCCC-cCCCEEecCC
Q 015690 206 VLEVIVEKGM-QNGQKITFPG 225 (402)
Q Consensus 206 ~l~V~Ip~G~-~~G~~i~~~g 225 (402)
.|.+.||||. ..|..=++.|
T Consensus 78 El~lei~pg~~~~G~iTTVEG 98 (163)
T TIGR00340 78 ELGIKIEPGPASQGYISNIEG 98 (163)
T ss_pred ceeEEecCCCcCCceEEehHh
Confidence 4678888887 4665555644
No 155
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=40.14 E-value=11 Score=30.40 Aligned_cols=12 Identities=33% Similarity=0.969 Sum_probs=7.7
Q ss_pred eeCCCCCCcceE
Q 015690 174 HPCNECKGTGET 185 (402)
Q Consensus 174 ~~C~~C~G~G~~ 185 (402)
..|..|.|.|..
T Consensus 33 k~c~rcgg~G~s 44 (95)
T PF03589_consen 33 KDCERCGGRGYS 44 (95)
T ss_pred hhhhhhcCCCCC
Confidence 456667776654
No 156
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=38.55 E-value=19 Score=33.95 Aligned_cols=12 Identities=42% Similarity=1.013 Sum_probs=6.4
Q ss_pred eCCCCCCcceEE
Q 015690 175 PCNECKGTGETI 186 (402)
Q Consensus 175 ~C~~C~G~G~~~ 186 (402)
+||.|+|+|++.
T Consensus 40 tCPTCqGtGrIP 51 (238)
T PF07092_consen 40 TCPTCQGTGRIP 51 (238)
T ss_pred cCCCCcCCccCC
Confidence 555555555543
No 157
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=38.30 E-value=35 Score=30.12 Aligned_cols=35 Identities=14% Similarity=0.314 Sum_probs=19.9
Q ss_pred eCCCCcCCc-eEEEEEecCCceeeEeeeeCCCCCCc
Q 015690 148 KCSGCQGSG-MKVSIRHLGPSMIQQMQHPCNECKGT 182 (402)
Q Consensus 148 ~C~~C~G~G-~~~~~~~~gpg~~~~~~~~C~~C~G~ 182 (402)
.||.|...- .++..+-+.+|..-.....|+.|+.+
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~ 37 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKR 37 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCc
Confidence 577777766 45555556665332223566666544
No 158
>PRK11712 ribonuclease G; Provisional
Probab=38.16 E-value=13 Score=39.09 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=19.0
Q ss_pred EEecCCceeeEeeeeCCCCCCcceEEc
Q 015690 161 IRHLGPSMIQQMQHPCNECKGTGETIN 187 (402)
Q Consensus 161 ~~~~gpg~~~~~~~~C~~C~G~G~~~~ 187 (402)
.++.++.+......+|+.|+|+|.+..
T Consensus 390 RkR~r~sl~~~l~~~Cp~C~G~G~v~s 416 (489)
T PRK11712 390 RKRTRESLEHVLCGECPTCHGRGTVKT 416 (489)
T ss_pred ecccCCChHHHhcCCCCCCCCCCCcCC
Confidence 344566666677788888888887643
No 159
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.49 E-value=57 Score=27.62 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=35.0
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhC
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLS 48 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~~~~kFk~i~~AYevLs 48 (402)
.||+|+..-+.+||-+-|-.|-.-..+.|.++=-.-.++-.|-|-|-
T Consensus 63 qILnV~~~ln~eei~k~yehLFevNdkskGGSFYLQSKVfRAkErld 109 (132)
T KOG3442|consen 63 QILNVKEPLNREEIEKRYEHLFEVNDKSKGGSFYLQSKVFRAKERLD 109 (132)
T ss_pred hHhCCCCCCCHHHHHHHHHHHHhccCcccCcceeehHHHHHHHHHHH
Confidence 58999999999999999999999888887775212222334666553
No 160
>PF02814 UreE_N: UreE urease accessory protein, N-terminal domain; InterPro: IPR004029 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The N-terminal domain is termed the peptide-binding domain. Deletion of this domain does not eliminate enzymatic activity, and the truncated protein can still activate urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=36.29 E-value=71 Score=23.48 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=22.9
Q ss_pred EEEEeccCCcEEEEEeCCCccccCCceEEecC
Q 015690 273 QFVITHLDGRQLLIKSQPGEVVKPDQFKAIND 304 (402)
Q Consensus 273 ~~~i~tldG~~l~v~i~~g~vi~~g~~~~i~g 304 (402)
...+.|-+|+.+-|.+|.+..+++|+++....
T Consensus 30 r~r~~t~~G~ei~i~L~r~~~L~~GDvL~~d~ 61 (65)
T PF02814_consen 30 RLRLTTDDGREIGIDLPRGTVLRDGDVLYLDD 61 (65)
T ss_dssp EEEEE-TTS-EEEEE-SSTTT--TTEEEEECT
T ss_pred EEEEECCCCCEEEEECCCCcccCCCCEEEeCC
Confidence 46788889999999999999999999987654
No 161
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=34.36 E-value=49 Score=27.43 Aligned_cols=7 Identities=29% Similarity=0.752 Sum_probs=4.1
Q ss_pred eeCCCCc
Q 015690 147 MKCSGCQ 153 (402)
Q Consensus 147 ~~C~~C~ 153 (402)
..|..|+
T Consensus 71 ~~C~~Cg 77 (113)
T PRK12380 71 AWCWDCS 77 (113)
T ss_pred EEcccCC
Confidence 4566665
No 162
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=34.36 E-value=23 Score=29.41 Aligned_cols=9 Identities=22% Similarity=0.840 Sum_probs=4.0
Q ss_pred eeCCCCcCC
Q 015690 147 MKCSGCQGS 155 (402)
Q Consensus 147 ~~C~~C~G~ 155 (402)
..|..|+-.
T Consensus 71 ~~C~~Cg~~ 79 (113)
T PF01155_consen 71 ARCRDCGHE 79 (113)
T ss_dssp EEETTTS-E
T ss_pred EECCCCCCE
Confidence 345555533
No 163
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=34.25 E-value=40 Score=28.06 Aligned_cols=28 Identities=21% Similarity=0.465 Sum_probs=12.6
Q ss_pred eeeecCCccCCCcccCceeeCCCCcCCc
Q 015690 129 RNVICTKCKGKGSKSGASMKCSGCQGSG 156 (402)
Q Consensus 129 r~~~C~~C~G~G~~~~~~~~C~~C~G~G 156 (402)
....|..|+-.-........||.|++..
T Consensus 69 ~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (115)
T TIGR00100 69 VECECEDCSEEVSPEIDLYRCPKCHGIM 96 (115)
T ss_pred cEEEcccCCCEEecCCcCccCcCCcCCC
Confidence 3456777753322222223455555444
No 164
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=34.12 E-value=1.2e+02 Score=23.29 Aligned_cols=31 Identities=10% Similarity=-0.053 Sum_probs=24.2
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 015690 2 RFSESRKNASQDDLKKAYRKAAIKNHPDKGG 32 (402)
Q Consensus 2 ~iLgv~~~As~~eIkkAYrklA~k~HPDkn~ 32 (402)
++.++++-||..||+.|-++..+|..=-..|
T Consensus 7 ~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~P 37 (88)
T COG5552 7 ELFNFDPPATPVEVRDAALQFVRKLSGTTHP 37 (88)
T ss_pred HHhCCCCCCCcHHHHHHHHHHHHHhcCCCCc
Confidence 4678999999999999988887776444433
No 165
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=32.80 E-value=1.7e+02 Score=26.73 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=14.0
Q ss_pred EEEEEecCC--CcCCCEEecCCC
Q 015690 206 VLEVIVEKG--MQNGQKITFPGE 226 (402)
Q Consensus 206 ~l~V~Ip~G--~~~G~~i~~~ge 226 (402)
+-.|++++| ++-|+.|.+.++
T Consensus 64 ~~~vel~~gE~l~vGDei~vd~e 86 (201)
T COG1326 64 TKEVELDPGETLKVGDEIEVDGE 86 (201)
T ss_pred ceeEecCCCCeEecCCEEEEcCC
Confidence 346677777 667777777653
No 166
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=32.73 E-value=35 Score=22.95 Aligned_cols=12 Identities=33% Similarity=0.692 Sum_probs=5.3
Q ss_pred eeecCCccCCCc
Q 015690 130 NVICTKCKGKGS 141 (402)
Q Consensus 130 ~~~C~~C~G~G~ 141 (402)
...||.|.|+..
T Consensus 3 h~pCP~CGG~Dr 14 (40)
T PF08273_consen 3 HGPCPICGGKDR 14 (40)
T ss_dssp EE--TTTT-TTT
T ss_pred CCCCCCCcCccc
Confidence 456777766654
No 167
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=32.51 E-value=72 Score=28.28 Aligned_cols=34 Identities=18% Similarity=0.458 Sum_probs=17.8
Q ss_pred eeCCCCcCCceEEE-EEecC-CceeeEeeeeCCCCC
Q 015690 147 MKCSGCQGSGMKVS-IRHLG-PSMIQQMQHPCNECK 180 (402)
Q Consensus 147 ~~C~~C~G~G~~~~-~~~~g-pg~~~~~~~~C~~C~ 180 (402)
..|+.|+..|.... ...+. ++-+-.+...|+.|+
T Consensus 2 s~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CG 37 (161)
T PF03367_consen 2 SLCPNCGENGTTRILLTDIPYFKEVIIMSFECEHCG 37 (161)
T ss_dssp EE-TTTSSCCEEEEEEEEETTTEEEEEEEEE-TTT-
T ss_pred CcCCCCCCCcEEEEEEEcCCCCceEEEEEeECCCCC
Confidence 35888888886433 22222 344455667788885
No 168
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=32.32 E-value=47 Score=21.26 Aligned_cols=10 Identities=60% Similarity=1.428 Sum_probs=5.2
Q ss_pred eCCCCcCCce
Q 015690 148 KCSGCQGSGM 157 (402)
Q Consensus 148 ~C~~C~G~G~ 157 (402)
.|+.|++.|.
T Consensus 5 ~C~~C~~~~i 14 (33)
T PF08792_consen 5 KCSKCGGNGI 14 (33)
T ss_pred EcCCCCCCeE
Confidence 4555555553
No 169
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=32.27 E-value=30 Score=33.04 Aligned_cols=32 Identities=28% Similarity=0.407 Sum_probs=24.7
Q ss_pred eeeccCHHHHhcC-CEEEEeccCCcEEEEEeCC
Q 015690 259 VEHTLSLTEALCG-FQFVITHLDGRQLLIKSQP 290 (402)
Q Consensus 259 ~~~~I~l~eAl~G-~~~~i~tldG~~l~v~i~~ 290 (402)
++..|-||||++| +..+|+|.|+..=.+.|.|
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTp 50 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQVNRLEITP 50 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCccceeeEEEcC
Confidence 3467999999999 6899999998754455444
No 170
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=32.26 E-value=25 Score=22.96 Aligned_cols=10 Identities=20% Similarity=0.810 Sum_probs=5.7
Q ss_pred eecCCccCCC
Q 015690 131 VICTKCKGKG 140 (402)
Q Consensus 131 ~~C~~C~G~G 140 (402)
+.||.|+..-
T Consensus 3 i~CP~C~~~f 12 (37)
T PF13719_consen 3 ITCPNCQTRF 12 (37)
T ss_pred EECCCCCceE
Confidence 4566665543
No 171
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=31.98 E-value=22 Score=33.52 Aligned_cols=13 Identities=38% Similarity=0.997 Sum_probs=8.1
Q ss_pred eecCCccCCCccc
Q 015690 131 VICTKCKGKGSKS 143 (402)
Q Consensus 131 ~~C~~C~G~G~~~ 143 (402)
++||+|+|+|...
T Consensus 39 vtCPTCqGtGrIP 51 (238)
T PF07092_consen 39 VTCPTCQGTGRIP 51 (238)
T ss_pred CcCCCCcCCccCC
Confidence 4666666666544
No 172
>PRK14873 primosome assembly protein PriA; Provisional
Probab=31.78 E-value=51 Score=36.05 Aligned_cols=60 Identities=22% Similarity=0.596 Sum_probs=38.2
Q ss_pred ccccceecceee-----eecCCccCCCcccCceeeCCCCcCCceEEEEEecCCceeeEeeeeCCCCCCcceEEcCCCCCC
Q 015690 119 NGTSKKLSLSRN-----VICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCP 193 (402)
Q Consensus 119 ~G~~~~~~~~r~-----~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~ 193 (402)
.| ..-+-++|. +.|..|. ....|+.|.+.=.. ... ...-.|..|+-.- . -..|+
T Consensus 368 ~g-qvll~lnRrGyap~l~C~~Cg-------~~~~C~~C~~~L~~--h~~-------~~~l~Ch~CG~~~--~--p~~Cp 426 (665)
T PRK14873 368 HG-PVLVQVPRRGYVPSLACARCR-------TPARCRHCTGPLGL--PSA-------GGTPRCRWCGRAA--P--DWRCP 426 (665)
T ss_pred cC-cEEEEecCCCCCCeeEhhhCc-------CeeECCCCCCceeE--ecC-------CCeeECCCCcCCC--c--CccCC
Confidence 45 555555553 6899993 34789999965321 111 1245799997542 2 47999
Q ss_pred ccCCcc
Q 015690 194 QCKGEK 199 (402)
Q Consensus 194 ~C~G~g 199 (402)
.|.+..
T Consensus 427 ~Cgs~~ 432 (665)
T PRK14873 427 RCGSDR 432 (665)
T ss_pred CCcCCc
Confidence 998873
No 173
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=31.54 E-value=52 Score=21.85 Aligned_cols=8 Identities=38% Similarity=1.099 Sum_probs=4.5
Q ss_pred eeCCCCCC
Q 015690 174 HPCNECKG 181 (402)
Q Consensus 174 ~~C~~C~G 181 (402)
..|+.|+|
T Consensus 20 d~C~~C~G 27 (41)
T PF13453_consen 20 DVCPSCGG 27 (41)
T ss_pred EECCCCCe
Confidence 44666654
No 174
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=31.50 E-value=63 Score=26.87 Aligned_cols=7 Identities=29% Similarity=1.132 Sum_probs=4.6
Q ss_pred eeCCCCc
Q 015690 147 MKCSGCQ 153 (402)
Q Consensus 147 ~~C~~C~ 153 (402)
..|+.|+
T Consensus 71 ~~C~~Cg 77 (115)
T TIGR00100 71 CECEDCS 77 (115)
T ss_pred EEcccCC
Confidence 4677776
No 175
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=31.42 E-value=81 Score=20.98 Aligned_cols=17 Identities=12% Similarity=0.249 Sum_probs=10.5
Q ss_pred eCCCCcCCceEEEEEec
Q 015690 148 KCSGCQGSGMKVSIRHL 164 (402)
Q Consensus 148 ~C~~C~G~G~~~~~~~~ 164 (402)
.|+.|+....+....|+
T Consensus 2 ~Cp~C~~~~a~~~q~Q~ 18 (40)
T smart00440 2 PCPKCGNREATFFQLQT 18 (40)
T ss_pred cCCCCCCCeEEEEEEcc
Confidence 47777776666554443
No 176
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=29.67 E-value=62 Score=31.86 Aligned_cols=9 Identities=22% Similarity=0.896 Sum_probs=6.3
Q ss_pred eecCCccCC
Q 015690 131 VICTKCKGK 139 (402)
Q Consensus 131 ~~C~~C~G~ 139 (402)
..||.|.+.
T Consensus 185 ~~CPvCGs~ 193 (305)
T TIGR01562 185 TLCPACGSP 193 (305)
T ss_pred CcCCCCCCh
Confidence 468888665
No 177
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=29.21 E-value=68 Score=23.54 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=17.9
Q ss_pred EEEEeCCCCCCHHHHHHHHhhC
Q 015690 322 HFTVDFPESLSPDQCKMLETVL 343 (402)
Q Consensus 322 ~~~V~~P~~l~~~~~~~l~~~l 343 (402)
..+..||.+||++++..+-.+-
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la 38 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLA 38 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHH
Confidence 5678899999999988876653
No 178
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=29.15 E-value=27 Score=28.92 Aligned_cols=41 Identities=12% Similarity=0.417 Sum_probs=21.8
Q ss_pred cccccceec-ceeeeecCCccCCCcccCceeeCCCCcCCceE
Q 015690 118 YNGTSKKLS-LSRNVICTKCKGKGSKSGASMKCSGCQGSGMK 158 (402)
Q Consensus 118 ~~G~~~~~~-~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~ 158 (402)
+.|+...+. ++....|..|+-..........||.|++....
T Consensus 57 ~e~a~L~Ie~~p~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~ 98 (113)
T PF01155_consen 57 LEGAELEIEEVPARARCRDCGHEFEPDEFDFSCPRCGSPDVE 98 (113)
T ss_dssp TTT-EEEEEEE--EEEETTTS-EEECHHCCHH-SSSSSS-EE
T ss_pred ccCCEEEEEecCCcEECCCCCCEEecCCCCCCCcCCcCCCcE
Confidence 344443332 33457899998777655444668888888743
No 179
>cd05792 S1_eIF1AD_like S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like, S1-like RNA-binding domain. eIF1AD is also known as MGC11102 protein. Little is known about the function of eIF1AD. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins, including translation initiation factor IF1A (also referred to as eIF1A in eukaryotes). eIF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors.
Probab=28.23 E-value=2.7e+02 Score=21.56 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=16.5
Q ss_pred hcCC-EEEEeccCCcEEEEEeCC
Q 015690 269 LCGF-QFVITHLDGRQLLIKSQP 290 (402)
Q Consensus 269 l~G~-~~~i~tldG~~l~v~i~~ 290 (402)
++|. -+.|.+.||.+..+.+|.
T Consensus 9 ~~G~n~~~V~~~dG~~~l~~iP~ 31 (78)
T cd05792 9 SKGNNLHEVETPNGSRYLVSMPT 31 (78)
T ss_pred cCCCcEEEEEcCCCCEEEEEech
Confidence 4454 367889999988888875
No 180
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=27.98 E-value=78 Score=25.88 Aligned_cols=11 Identities=27% Similarity=0.582 Sum_probs=5.6
Q ss_pred eeCCCCcCCce
Q 015690 147 MKCSGCQGSGM 157 (402)
Q Consensus 147 ~~C~~C~G~G~ 157 (402)
..|.-|.++|+
T Consensus 36 daCeiC~~~GY 46 (102)
T PF10080_consen 36 DACEICGPKGY 46 (102)
T ss_pred EeccccCCCce
Confidence 34555555554
No 181
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=27.61 E-value=1.6e+02 Score=24.57 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=18.0
Q ss_pred EEEecCCCcCCCEEecCCCcCC
Q 015690 208 EVIVEKGMQNGQKITFPGEADE 229 (402)
Q Consensus 208 ~V~Ip~G~~~G~~i~~~geG~~ 229 (402)
+..||.|+.+|+.|++.|.-..
T Consensus 2 ~~~lp~~l~~G~~i~i~G~~~~ 23 (128)
T smart00276 2 TLPIPGGLKPGQTLTVRGIVLP 23 (128)
T ss_pred cccCCCCCCCCCEEEEEEEECC
Confidence 3568999999999999986543
No 182
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=27.10 E-value=68 Score=26.78 Aligned_cols=56 Identities=20% Similarity=0.313 Sum_probs=31.9
Q ss_pred CCEEEEeccCCcEEEEEeCCCc--cccCCceEEecCCCCCCCCCCC--CCCcEEEEEEEeCCC
Q 015690 271 GFQFVITHLDGRQLLIKSQPGE--VVKPDQFKAINDEGMPMYQRPF--MRGKLYIHFTVDFPE 329 (402)
Q Consensus 271 G~~~~i~tldG~~l~v~i~~g~--vi~~g~~~~i~g~Gmp~~~~~~--~~GdL~i~~~V~~P~ 329 (402)
|..+.|.+.||+.+.-+||||- +++.|+.+. .|-|...+|. ..|-.=.++-..=|.
T Consensus 23 g~~vtI~~~dG~~v~~~IP~GpeLiV~eG~~V~---~dqpLT~nPNVGGFGQ~e~EIVLQ~p~ 82 (118)
T PF01333_consen 23 GYEVTIETSDGETVVETIPAGPELIVSEGQSVK---ADQPLTNNPNVGGFGQGETEIVLQNPN 82 (118)
T ss_dssp EEEEEEETTTSEEEEEEEESSS-BS--TT-EET---TT-BSB------EEEEEEEEEEE--SH
T ss_pred CEEEEEECCCCCEEEEecCCCCeEEEcCCCEEe---cCCcccCCCCcCccCcCceEEEeeccc
Confidence 4578999999998888999884 456666542 3556665553 356555565555453
No 183
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=27.03 E-value=76 Score=22.75 Aligned_cols=32 Identities=25% Similarity=0.475 Sum_probs=16.1
Q ss_pred eeCCCCcCCceEEEEEecCC--ceeeEeeeeCCCCCC
Q 015690 147 MKCSGCQGSGMKVSIRHLGP--SMIQQMQHPCNECKG 181 (402)
Q Consensus 147 ~~C~~C~G~G~~~~~~~~gp--g~~~~~~~~C~~C~G 181 (402)
.+||-| |...+......+. ++. ....|..|+.
T Consensus 4 kPCPFC-G~~~~~~~~~~~~~~~~~--~~V~C~~Cga 37 (61)
T PF14354_consen 4 KPCPFC-GSADVLIRQDEGFDYGMY--YYVECTDCGA 37 (61)
T ss_pred cCCCCC-CCcceEeecccCCCCCCE--EEEEcCCCCC
Confidence 357777 6555444333332 111 3455777765
No 184
>PF14353 CpXC: CpXC protein
Probab=26.61 E-value=34 Score=28.79 Aligned_cols=14 Identities=14% Similarity=0.373 Sum_probs=9.9
Q ss_pred eeeeCCCCCCcceE
Q 015690 172 MQHPCNECKGTGET 185 (402)
Q Consensus 172 ~~~~C~~C~G~G~~ 185 (402)
...+||.|+.+..+
T Consensus 37 ~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 37 FSFTCPSCGHKFRL 50 (128)
T ss_pred CEEECCCCCCceec
Confidence 35678888777765
No 185
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=25.36 E-value=56 Score=27.71 Aligned_cols=21 Identities=10% Similarity=0.167 Sum_probs=13.7
Q ss_pred cEEEEEEecCCCcCCCEEecC
Q 015690 204 KKVLEVIVEKGMQNGQKITFP 224 (402)
Q Consensus 204 ~~~l~V~Ip~G~~~G~~i~~~ 224 (402)
...+++.-+.+.+.||.+.+.
T Consensus 41 ~~~~~~~~~~~~~~GD~V~v~ 61 (135)
T PF04246_consen 41 PITFRAPNPIGAKVGDRVEVE 61 (135)
T ss_pred cEEEEecCCCCCCCCCEEEEE
Confidence 355666666777777766654
No 186
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=24.69 E-value=82 Score=26.30 Aligned_cols=28 Identities=14% Similarity=0.389 Sum_probs=13.6
Q ss_pred eeeecCCccCCCcccCce-eeCCCCcCCc
Q 015690 129 RNVICTKCKGKGSKSGAS-MKCSGCQGSG 156 (402)
Q Consensus 129 r~~~C~~C~G~G~~~~~~-~~C~~C~G~G 156 (402)
....|..|+-.-...... ..||.|++..
T Consensus 70 ~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~ 98 (117)
T PRK00564 70 VELECKDCSHVFKPNALDYGVCEKCHSKN 98 (117)
T ss_pred CEEEhhhCCCccccCCccCCcCcCCCCCc
Confidence 456677776433322211 2355555554
No 187
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=24.55 E-value=29 Score=25.43 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=17.4
Q ss_pred EEEEeccCCcEEEEEeCCCcc
Q 015690 273 QFVITHLDGRQLLIKSQPGEV 293 (402)
Q Consensus 273 ~~~i~tldG~~l~v~i~~g~v 293 (402)
.+.++||.|+.|.|.|.|.+-
T Consensus 2 ~iKvktLt~KeIeidIep~Dk 22 (70)
T KOG0005|consen 2 LIKVKTLTGKEIEIDIEPTDK 22 (70)
T ss_pred eeeEeeeccceEEEeeCcchH
Confidence 467899999999999888753
No 188
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=24.50 E-value=50 Score=21.61 Aligned_cols=10 Identities=30% Similarity=0.946 Sum_probs=5.5
Q ss_pred eeCCCCcCCc
Q 015690 147 MKCSGCQGSG 156 (402)
Q Consensus 147 ~~C~~C~G~G 156 (402)
..|+.|+..-
T Consensus 6 v~CP~C~s~~ 15 (36)
T PF03811_consen 6 VHCPRCQSTE 15 (36)
T ss_pred eeCCCCCCCC
Confidence 3566665554
No 189
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=24.50 E-value=78 Score=27.65 Aligned_cols=7 Identities=29% Similarity=1.127 Sum_probs=4.2
Q ss_pred eeCCCCc
Q 015690 147 MKCSGCQ 153 (402)
Q Consensus 147 ~~C~~C~ 153 (402)
..|..|+
T Consensus 113 l~C~~Cg 119 (146)
T PF07295_consen 113 LVCENCG 119 (146)
T ss_pred EecccCC
Confidence 4566665
No 190
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.12 E-value=45 Score=25.86 Aligned_cols=7 Identities=29% Similarity=0.596 Sum_probs=4.4
Q ss_pred eCCCCcC
Q 015690 148 KCSGCQG 154 (402)
Q Consensus 148 ~C~~C~G 154 (402)
-|+.|+-
T Consensus 3 lCP~C~v 9 (88)
T COG3809 3 LCPICGV 9 (88)
T ss_pred ccCcCCc
Confidence 4777763
No 191
>COG1530 CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis]
Probab=24.10 E-value=79 Score=33.25 Aligned_cols=27 Identities=26% Similarity=0.589 Sum_probs=20.6
Q ss_pred EEecCCceeeEeeeeCCCCCCcceEEc
Q 015690 161 IRHLGPSMIQQMQHPCNECKGTGETIN 187 (402)
Q Consensus 161 ~~~~gpg~~~~~~~~C~~C~G~G~~~~ 187 (402)
.++.++.+......+|+.|.|+|.+..
T Consensus 383 R~R~~~sl~~~~~~~cp~c~G~g~v~~ 409 (487)
T COG1530 383 RKRTRESLLEVLSERCPGCKGTGHVRS 409 (487)
T ss_pred EEecCCCCceeeeeECCCceeeEEEec
Confidence 344466677788889999999998765
No 192
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=23.36 E-value=1.2e+02 Score=26.75 Aligned_cols=47 Identities=23% Similarity=0.381 Sum_probs=32.1
Q ss_pred EEEEeccCCcEEEEEeCCCccccCCceEEecCCCCCCCCCCC---CCCcEEEEEEEe
Q 015690 273 QFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPF---MRGKLYIHFTVD 326 (402)
Q Consensus 273 ~~~i~tldG~~l~v~i~~g~vi~~g~~~~i~g~Gmp~~~~~~---~~GdL~i~~~V~ 326 (402)
-+-|.|-+|-.|.|-| | + ++..|.|+|+-..-..+ ..||++++|+++
T Consensus 62 Aigi~t~~GvEiLiHi--G--i---DTV~L~GegF~~~v~~Gd~Vk~Gd~Li~fDl~ 111 (156)
T COG2190 62 AIGIETDEGVEILIHI--G--I---DTVKLNGEGFESLVKEGDKVKAGDPLLEFDLD 111 (156)
T ss_pred EEEEEcCCCcEEEEEe--c--e---eeEEECCcceEEEeeCCCEEccCCEEEEECHH
Confidence 4667777787666644 5 3 56678899986542222 479999999854
No 193
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=23.02 E-value=33 Score=20.49 Aligned_cols=21 Identities=33% Similarity=0.752 Sum_probs=12.1
Q ss_pred eeCCCCCCcceEEcCCCCCCccC
Q 015690 174 HPCNECKGTGETINDKDRCPQCK 196 (402)
Q Consensus 174 ~~C~~C~G~G~~~~~~~~C~~C~ 196 (402)
..|+.|+- .+......|+.|.
T Consensus 3 ~~Cp~Cg~--~~~~~~~fC~~CG 23 (26)
T PF13248_consen 3 MFCPNCGA--EIDPDAKFCPNCG 23 (26)
T ss_pred CCCcccCC--cCCcccccChhhC
Confidence 45777754 2333456777774
No 194
>PRK05978 hypothetical protein; Provisional
Probab=22.92 E-value=46 Score=29.16 Aligned_cols=7 Identities=29% Similarity=1.051 Sum_probs=4.3
Q ss_pred eeCCCCc
Q 015690 147 MKCSGCQ 153 (402)
Q Consensus 147 ~~C~~C~ 153 (402)
-+|+.|.
T Consensus 34 grCP~CG 40 (148)
T PRK05978 34 GRCPACG 40 (148)
T ss_pred CcCCCCC
Confidence 3577774
No 195
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=22.89 E-value=49 Score=24.84 Aligned_cols=14 Identities=21% Similarity=0.570 Sum_probs=8.4
Q ss_pred eeCCCCcCCceEEE
Q 015690 147 MKCSGCQGSGMKVS 160 (402)
Q Consensus 147 ~~C~~C~G~G~~~~ 160 (402)
-||..|+.+-....
T Consensus 5 FTC~~C~~Rs~~~~ 18 (66)
T PF05180_consen 5 FTCNKCGTRSAKMF 18 (66)
T ss_dssp EEETTTTEEEEEEE
T ss_pred EEcCCCCCccceee
Confidence 36777776655433
No 196
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=22.69 E-value=66 Score=19.15 Aligned_cols=6 Identities=50% Similarity=1.691 Sum_probs=3.1
Q ss_pred eeCCCC
Q 015690 174 HPCNEC 179 (402)
Q Consensus 174 ~~C~~C 179 (402)
.+|+.|
T Consensus 17 f~CPnC 22 (24)
T PF07754_consen 17 FPCPNC 22 (24)
T ss_pred EeCCCC
Confidence 445555
No 197
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=22.23 E-value=64 Score=26.03 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=16.1
Q ss_pred ccCCCCCCCHHHHHHHHHHH
Q 015690 3 FSESRKNASQDDLKKAYRKA 22 (402)
Q Consensus 3 iLgv~~~As~~eIkkAYrkl 22 (402)
++-|+++||..|||+|..+|
T Consensus 25 vF~V~~~AtK~~IK~AvE~l 44 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEEL 44 (94)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 35688899999999888776
No 198
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=22.18 E-value=53 Score=29.36 Aligned_cols=23 Identities=35% Similarity=0.923 Sum_probs=14.1
Q ss_pred eecCCccCCCcccCceeeCCCCcCCc
Q 015690 131 VICTKCKGKGSKSGASMKCSGCQGSG 156 (402)
Q Consensus 131 ~~C~~C~G~G~~~~~~~~C~~C~G~G 156 (402)
++|..|.+.-.+. .+||.|.+.|
T Consensus 163 ilCtvCe~r~w~g---~~CPKCGr~G 185 (200)
T PF12387_consen 163 ILCTVCEGREWKG---GNCPKCGRHG 185 (200)
T ss_pred EEEeeeecCccCC---CCCCcccCCC
Confidence 6777777664432 2466666666
No 199
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=22.09 E-value=1.4e+02 Score=23.83 Aligned_cols=23 Identities=22% Similarity=0.622 Sum_probs=18.6
Q ss_pred EEEEEEEeCCCCCCHHHHHHHHh
Q 015690 319 LYIHFTVDFPESLSPDQCKMLET 341 (402)
Q Consensus 319 L~i~~~V~~P~~l~~~~~~~l~~ 341 (402)
..|++.|.+|..+++++.+.|+.
T Consensus 3 flv~m~v~~P~~~~~~~~~~~~a 25 (91)
T PF02426_consen 3 FLVRMTVNVPPDMPPEEVDRLKA 25 (91)
T ss_pred EEEEEEeeCCCCCCHHHHHHHHH
Confidence 46899999999999988666543
No 200
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=21.97 E-value=74 Score=23.68 Aligned_cols=41 Identities=27% Similarity=0.414 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhCCccccccccc
Q 015690 17 KAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQ 58 (402)
Q Consensus 17 kAYrklA~k~HPDkn~~~~kFk~i~~AYevLsd~~kR~~YD~ 58 (402)
+.+|...++-||+.. ..+.-+.|.+.+..||+.+|..-+|.
T Consensus 14 ~~~r~~~~~~~p~~~-~~eisk~l~~~Wk~ls~~eK~~y~~~ 54 (72)
T cd01388 14 KRHRRKVLQEYPLKE-NRAISKILGDRWKALSNEEKQPYYEE 54 (72)
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445666677799863 35788889999999999887654443
No 201
>PF06975 DUF1299: Protein of unknown function (DUF1299); InterPro: IPR010725 This entry represents a conserved region approximately 50 residues long within a number of proteins of unknown function that seem to be specific to Arabidopsis thaliana. Note that many proteins contain multiple copies of this region.
Probab=21.27 E-value=29 Score=23.43 Aligned_cols=12 Identities=50% Similarity=0.756 Sum_probs=9.8
Q ss_pred HHHHHhhCCccc
Q 015690 41 AQAYEVLSDPEK 52 (402)
Q Consensus 41 ~~AYevLsd~~k 52 (402)
++||-+|||.+.
T Consensus 10 qeayvilsdde~ 21 (47)
T PF06975_consen 10 QEAYVILSDDED 21 (47)
T ss_pred hhheeecccccc
Confidence 689999998754
No 202
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=21.19 E-value=47 Score=27.59 Aligned_cols=27 Identities=26% Similarity=0.631 Sum_probs=16.2
Q ss_pred eeeeCCCCCCcceEEcCCCCCCccCCc
Q 015690 172 MQHPCNECKGTGETINDKDRCPQCKGE 198 (402)
Q Consensus 172 ~~~~C~~C~G~G~~~~~~~~C~~C~G~ 198 (402)
.+..||.|+=.=+..-..|.|..|+-.
T Consensus 68 v~V~CP~C~K~TKmLGr~D~CM~C~~p 94 (114)
T PF11023_consen 68 VQVECPNCGKQTKMLGRVDACMHCKEP 94 (114)
T ss_pred eeeECCCCCChHhhhchhhccCcCCCc
Confidence 345677776543334445788888644
No 203
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=20.83 E-value=76 Score=20.93 Aligned_cols=12 Identities=25% Similarity=0.686 Sum_probs=7.1
Q ss_pred eeecCCccCCCc
Q 015690 130 NVICTKCKGKGS 141 (402)
Q Consensus 130 ~~~C~~C~G~G~ 141 (402)
...||.|.|+..
T Consensus 3 ~~pCP~CGG~Dr 14 (37)
T smart00778 3 HGPCPNCGGSDR 14 (37)
T ss_pred ccCCCCCCCccc
Confidence 345666666554
No 204
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=20.50 E-value=57 Score=21.19 Aligned_cols=9 Identities=33% Similarity=1.169 Sum_probs=5.3
Q ss_pred eecCCccCC
Q 015690 131 VICTKCKGK 139 (402)
Q Consensus 131 ~~C~~C~G~ 139 (402)
+.|+.|+-.
T Consensus 3 i~Cp~C~~~ 11 (36)
T PF13717_consen 3 ITCPNCQAK 11 (36)
T ss_pred EECCCCCCE
Confidence 456666554
No 205
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=20.42 E-value=1.6e+02 Score=23.47 Aligned_cols=23 Identities=9% Similarity=0.444 Sum_probs=18.6
Q ss_pred EEEEEEEeCCCCCCHHHHHHHHh
Q 015690 319 LYIHFTVDFPESLSPDQCKMLET 341 (402)
Q Consensus 319 L~i~~~V~~P~~l~~~~~~~l~~ 341 (402)
..|++.|++|..+++++.+.|+.
T Consensus 2 flV~m~V~~P~~~~~~~~~~i~a 24 (90)
T TIGR03221 2 FHVRMDVNLPVDMPAEKAAAIKA 24 (90)
T ss_pred eEEEEEeeCCCCCCHHHHHHHHH
Confidence 36899999999999988766643
No 206
>PRK13263 ureE urease accessory protein UreE; Provisional
Probab=20.22 E-value=4.5e+02 Score=24.33 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=34.0
Q ss_pred eeeeccCHHHHhcCCEEEEeccCCcEEEEEeCCCccccCCceEEecC
Q 015690 258 FVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAIND 304 (402)
Q Consensus 258 ~~~~~I~l~eAl~G~~~~i~tldG~~l~v~i~~g~vi~~g~~~~i~g 304 (402)
.-++.|++.++. =-.+.+.|-+|+.+-|.+|.++++..|+++....
T Consensus 22 ~~~V~L~~ddr~-KrR~R~~td~G~evgl~LpRg~~L~dGDvL~~dd 67 (206)
T PRK13263 22 APTLTLAFDARC-KSRLAATLDTGREVAVVLPRGTVLRDGDVLVAED 67 (206)
T ss_pred eeEEEECHHHhh-cceEEEECCCCCEEEEECCCCCccCCCCEEEeCC
Confidence 345666765444 3456778889999999999888889998887653
No 207
>PF02963 EcoRI: Restriction endonuclease EcoRI; InterPro: IPR004221 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents restriction endonucleases EcoRI, which requires magnesium as a cofactor. EcoRI recognises the DNA sequence GAATTC and cleaves after G-1 [].; GO: 0000287 magnesium ion binding, 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 1ERI_A 1CL8_A 1QRH_A 1QPS_A 1CKQ_A 1QC9_B 1QRI_A 2OXV_A.
Probab=20.08 E-value=56 Score=30.22 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=23.3
Q ss_pred EEEEeccCCcEEEEEeCCCccccCCceEEecCCCCCCCC
Q 015690 273 QFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQ 311 (402)
Q Consensus 273 ~~~i~tldG~~l~v~i~~g~vi~~g~~~~i~g~Gmp~~~ 311 (402)
++.|+-+|||.+.+....|. +.-=+.+.-.+.|||+..
T Consensus 162 ~~~v~rpdgrvv~l~ynsg~-lnrldrltaanygmpint 199 (257)
T PF02963_consen 162 TISVTRPDGRVVTLEYNSGM-LNRLDRLTAANYGMPINT 199 (257)
T ss_dssp -EEEEETTSEEEEE-TT-TT-T--GGGTGGGGTT--SSS
T ss_pred ceeeeCCCCcEEEEEeccch-hhHHHHHhhhhcCCccch
Confidence 58899999998888666663 333455666799999853
Done!