Query 015691
Match_columns 402
No_of_seqs 270 out of 932
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 08:40:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015691.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015691hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.4 6.6E-13 1.4E-17 99.3 4.7 53 243-296 5-60 (60)
2 smart00353 HLH helix loop heli 99.3 4.4E-12 9.6E-17 93.4 6.3 49 247-296 1-52 (53)
3 PF00010 HLH: Helix-loop-helix 99.3 3.8E-12 8.2E-17 95.2 5.1 48 244-292 3-55 (55)
4 KOG1318 Helix loop helix trans 99.2 2.6E-11 5.7E-16 124.1 5.7 60 238-298 229-292 (411)
5 KOG1319 bHLHZip transcription 99.0 4.5E-10 9.7E-15 105.2 3.8 65 244-309 64-135 (229)
6 KOG4304 Transcriptional repres 98.4 1.3E-07 2.9E-12 91.8 2.0 55 245-299 35-96 (250)
7 KOG3561 Aryl-hydrocarbon recep 98.1 3.2E-06 7E-11 93.2 4.9 52 243-294 21-75 (803)
8 KOG2483 Upstream transcription 97.9 1.6E-05 3.5E-10 76.9 6.5 63 243-305 60-124 (232)
9 PLN03217 transcription factor 97.7 5.8E-05 1.3E-09 63.4 5.8 57 251-308 16-78 (93)
10 KOG2588 Predicted DNA-binding 97.7 1.5E-05 3.2E-10 88.8 2.2 66 241-306 275-340 (953)
11 KOG0561 bHLH transcription fac 97.4 6.9E-05 1.5E-09 75.1 2.0 52 245-297 63-116 (373)
12 KOG3960 Myogenic helix-loop-he 96.8 0.0027 5.8E-08 62.6 6.6 57 246-302 122-179 (284)
13 KOG4029 Transcription factor H 96.6 0.0021 4.5E-08 61.1 3.9 58 245-302 112-172 (228)
14 KOG3910 Helix loop helix trans 94.9 0.027 5.8E-07 60.2 4.2 56 244-299 528-586 (632)
15 KOG4447 Transcription factor T 88.3 0.25 5.5E-06 45.9 1.6 48 244-292 80-129 (173)
16 KOG3560 Aryl-hydrocarbon recep 84.4 0.82 1.8E-05 49.8 3.2 39 250-289 33-75 (712)
17 KOG3558 Hypoxia-inducible fact 79.3 1.3 2.8E-05 49.5 2.4 43 246-289 50-96 (768)
18 KOG3898 Transcription factor N 69.9 4.8 0.0001 39.7 3.5 48 245-293 75-125 (254)
19 KOG3559 Transcriptional regula 67.1 4.7 0.0001 43.0 3.0 79 249-327 8-90 (598)
20 KOG4395 Transcription factor A 65.2 8.1 0.00018 38.8 4.1 53 245-297 177-231 (285)
21 PF13334 DUF4094: Domain of un 41.9 44 0.00095 28.6 4.3 26 280-305 67-92 (95)
22 KOG3582 Mlx interactors and re 40.5 15 0.00032 41.6 1.5 59 243-301 652-714 (856)
23 COG3074 Uncharacterized protei 37.2 46 0.001 27.7 3.5 29 281-309 13-41 (79)
24 KOG4447 Transcription factor T 30.9 41 0.00088 31.8 2.6 43 249-292 29-73 (173)
25 KOG3582 Mlx interactors and re 29.3 18 0.00038 41.0 -0.1 60 242-304 787-850 (856)
26 PRK15422 septal ring assembly 28.7 75 0.0016 26.8 3.5 29 281-309 13-41 (79)
27 PF14689 SPOB_a: Sensor_kinase 27.4 1.1E+02 0.0024 23.8 4.1 41 251-299 17-57 (62)
28 PF06005 DUF904: Protein of un 26.5 93 0.002 25.4 3.6 26 281-306 13-38 (72)
29 KOG3584 cAMP response element 25.7 36 0.00077 35.1 1.3 47 251-310 290-336 (348)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.36 E-value=6.6e-13 Score=99.28 Aligned_cols=53 Identities=36% Similarity=0.627 Sum_probs=48.7
Q ss_pred CCccchhHHHhHHHHHHHHHHHhccCCCC---CCCCChhhhHHHHHHHHHHHHHHHH
Q 015691 243 TNSHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVE 296 (402)
Q Consensus 243 ~~~HslaERrRRekIner~~~Lr~LVP~~---~K~tdKAsIL~eAIdYIk~LQ~QVq 296 (402)
+..|+..||+||++||+.|..|+.+||.+ .+ .+|++||+.||+||++|+.+++
T Consensus 5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k-~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKK-LSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHhC
Confidence 35799999999999999999999999998 55 5999999999999999998863
No 2
>smart00353 HLH helix loop helix domain.
Probab=99.31 E-value=4.4e-12 Score=93.36 Aligned_cols=49 Identities=39% Similarity=0.596 Sum_probs=44.6
Q ss_pred chhHHHhHHHHHHHHHHHhccCCC---CCCCCChhhhHHHHHHHHHHHHHHHH
Q 015691 247 SLAERVRREKISERMRLLQELVPG---CNKITGKAVMLDEIINYVQSLQQQVE 296 (402)
Q Consensus 247 slaERrRRekIner~~~Lr~LVP~---~~K~tdKAsIL~eAIdYIk~LQ~QVq 296 (402)
+..||+||++||+.|..|+.+||. ..++ +|++||++||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~-~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKL-SKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999996 4464 999999999999999999986
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.29 E-value=3.8e-12 Score=95.19 Aligned_cols=48 Identities=40% Similarity=0.724 Sum_probs=44.7
Q ss_pred CccchhHHHhHHHHHHHHHHHhccCCCC-----CCCCChhhhHHHHHHHHHHHH
Q 015691 244 NSHSLAERVRREKISERMRLLQELVPGC-----NKITGKAVMLDEIINYVQSLQ 292 (402)
Q Consensus 244 ~~HslaERrRRekIner~~~Lr~LVP~~-----~K~tdKAsIL~eAIdYIk~LQ 292 (402)
..|+..||+||++||+.|..|+.+||.+ .+ .+|++||+.||+||++||
T Consensus 3 ~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k-~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 3 QKHNERERRRRDRINDCFDELRELLPSCSAGSSRK-LSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSS-SSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccchhcccccc-CCHHHHHHHHHHHHHHhC
Confidence 3699999999999999999999999997 45 599999999999999997
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.17 E-value=2.6e-11 Score=124.12 Aligned_cols=60 Identities=33% Similarity=0.617 Sum_probs=51.6
Q ss_pred cCCCcCCccchhHHHhHHHHHHHHHHHhccCCCCC----CCCChhhhHHHHHHHHHHHHHHHHHH
Q 015691 238 KRGQATNSHSLAERVRREKISERMRLLQELVPGCN----KITGKAVMLDEIINYVQSLQQQVEFL 298 (402)
Q Consensus 238 kR~~a~~~HslaERrRRekIner~~~Lr~LVP~~~----K~tdKAsIL~eAIdYIk~LQ~QVq~L 298 (402)
|.++.++.|+++|||||++||++|+.|..|||.|. +. +|..||..+++||++||+..+..
T Consensus 229 rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~-nKgtILk~s~dYIr~Lqq~~q~~ 292 (411)
T KOG1318|consen 229 RDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKS-NKGTILKASCDYIRELQQTLQRA 292 (411)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhc-ccchhhHHHHHHHHHHHHHHHHH
Confidence 33444569999999999999999999999999994 43 79999999999999999877643
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.95 E-value=4.5e-10 Score=105.23 Aligned_cols=65 Identities=32% Similarity=0.546 Sum_probs=58.7
Q ss_pred CccchhHHHhHHHHHHHHHHHhccCCCCC-------CCCChhhhHHHHHHHHHHHHHHHHHHHhhhhhcCCcc
Q 015691 244 NSHSLAERVRREKISERMRLLQELVPGCN-------KITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPEL 309 (402)
Q Consensus 244 ~~HslaERrRRekIner~~~Lr~LVP~~~-------K~tdKAsIL~eAIdYIk~LQ~QVq~Le~~~~~~~p~~ 309 (402)
..|.-+||+||+.|+..+..|+.|||.|. | +.||.||.++|+||.+|++++..-+.++.+|+.++
T Consensus 64 ~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~K-lskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~v 135 (229)
T KOG1319|consen 64 RAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQK-LSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDV 135 (229)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHhccccccccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999774 5 37999999999999999999999999988887664
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.37 E-value=1.3e-07 Score=91.80 Aligned_cols=55 Identities=27% Similarity=0.393 Sum_probs=47.6
Q ss_pred ccchhHHHhHHHHHHHHHHHhccCCCCCCC-------CChhhhHHHHHHHHHHHHHHHHHHH
Q 015691 245 SHSLAERVRREKISERMRLLQELVPGCNKI-------TGKAVMLDEIINYVQSLQQQVEFLS 299 (402)
Q Consensus 245 ~HslaERrRRekIner~~~Lr~LVP~~~K~-------tdKAsIL~eAIdYIk~LQ~QVq~Le 299 (402)
.|.+.|||||.|||+.+..|++|||.+.++ .+||.||+-|++|++.||.+...--
T Consensus 35 ~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~~ 96 (250)
T KOG4304|consen 35 RKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAAA 96 (250)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccccc
Confidence 689999999999999999999999976443 2799999999999999997655433
No 7
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.07 E-value=3.2e-06 Score=93.17 Aligned_cols=52 Identities=21% Similarity=0.375 Sum_probs=47.6
Q ss_pred CCccchhHHHhHHHHHHHHHHHhccCCCCC---CCCChhhhHHHHHHHHHHHHHH
Q 015691 243 TNSHSLAERVRREKISERMRLLQELVPGCN---KITGKAVMLDEIINYVQSLQQQ 294 (402)
Q Consensus 243 ~~~HslaERrRRekIner~~~Lr~LVP~~~---K~tdKAsIL~eAIdYIk~LQ~Q 294 (402)
+.+|+.+|||||+++|..|.+|.+|||.|. .+.||-+||.+||++||.++.+
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 458999999999999999999999999997 4459999999999999998875
No 8
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.94 E-value=1.6e-05 Score=76.87 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=51.7
Q ss_pred CCccchhHHHhHHHHHHHHHHHhccCCCCCCCC--ChhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 015691 243 TNSHSLAERVRREKISERMRLLQELVPGCNKIT--GKAVMLDEIINYVQSLQQQVEFLSMKLATV 305 (402)
Q Consensus 243 ~~~HslaERrRRekIner~~~Lr~LVP~~~K~t--dKAsIL~eAIdYIk~LQ~QVq~Le~~~~~~ 305 (402)
+..|+.-||+||..|.+.|..|+.+||....-+ ..++||+.|++||+.|+.+....+..++.+
T Consensus 60 R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l 124 (232)
T KOG2483|consen 60 RAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDL 124 (232)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 347999999999999999999999999654322 268999999999999998777666555544
No 9
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.75 E-value=5.8e-05 Score=63.37 Aligned_cols=57 Identities=28% Similarity=0.530 Sum_probs=47.8
Q ss_pred HHhHHHHHHHHHHHhccCCCC------CCCCChhhhHHHHHHHHHHHHHHHHHHHhhhhhcCCc
Q 015691 251 RVRREKISERMRLLQELVPGC------NKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPE 308 (402)
Q Consensus 251 RrRRekIner~~~Lr~LVP~~------~K~tdKAsIL~eAIdYIk~LQ~QVq~Le~~~~~~~p~ 308 (402)
|---+.|++-+..||.|+|.. .|. .-+-||+||..||+.|+++|..|++++..+-..
T Consensus 16 risddqi~dLvsKLq~llPe~r~~r~s~k~-saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 16 RISEDQINDLIIKLQQLLPELRDSRRSDKV-SAARVLQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred CCCHHHHHHHHHHHHHHChHHHhhhccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444588999999999999964 333 567789999999999999999999999887543
No 10
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.71 E-value=1.5e-05 Score=88.81 Aligned_cols=66 Identities=26% Similarity=0.477 Sum_probs=57.5
Q ss_pred CcCCccchhHHHhHHHHHHHHHHHhccCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 015691 241 QATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVN 306 (402)
Q Consensus 241 ~a~~~HslaERrRRekIner~~~Lr~LVP~~~K~tdKAsIL~eAIdYIk~LQ~QVq~Le~~~~~~~ 306 (402)
..+.+|+++|||-|.-||++|..|+++||+..-+..|..+|..||+||++|+..-+.+....+.+.
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 457899999999999999999999999998765458999999999999999988887776655544
No 11
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.40 E-value=6.9e-05 Score=75.13 Aligned_cols=52 Identities=25% Similarity=0.406 Sum_probs=45.7
Q ss_pred ccchhHHHhHHHHHHHHHHHhccCCC--CCCCCChhhhHHHHHHHHHHHHHHHHH
Q 015691 245 SHSLAERVRREKISERMRLLQELVPG--CNKITGKAVMLDEIINYVQSLQQQVEF 297 (402)
Q Consensus 245 ~HslaERrRRekIner~~~Lr~LVP~--~~K~tdKAsIL~eAIdYIk~LQ~QVq~ 297 (402)
.-+..||||=.-||-.|..||.|+|. ..|+ .||.||+.+.+||.+|+.+.-.
T Consensus 63 IANsNERRRMQSINAGFqsLr~LlPr~eGEKL-SKAAILQQTa~yI~~Le~~Kt~ 116 (373)
T KOG0561|consen 63 IANSNERRRMQSINAGFQSLRALLPRKEGEKL-SKAAILQQTADYIHQLEGHKTE 116 (373)
T ss_pred hhcchHHHHHHhhhHHHHHHHHhcCcccchhh-HHHHHHHHHHHHHHHHHhcccc
Confidence 45778999999999999999999995 5676 9999999999999999866533
No 12
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=96.83 E-value=0.0027 Score=62.58 Aligned_cols=57 Identities=23% Similarity=0.282 Sum_probs=46.5
Q ss_pred cchhHHHhHHHHHHHHHHHhc-cCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHhhh
Q 015691 246 HSLAERVRREKISERMRLLQE-LVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKL 302 (402)
Q Consensus 246 HslaERrRRekIner~~~Lr~-LVP~~~K~tdKAsIL~eAIdYIk~LQ~QVq~Le~~~ 302 (402)
--+.||||=.|+||-|.+|+. -+++-+.-.-|.-||-.||+||..||.-++++....
T Consensus 122 ATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~ 179 (284)
T KOG3960|consen 122 ATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAE 179 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 457899999999999999975 345555434799999999999999998888776443
No 13
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=96.58 E-value=0.0021 Score=61.14 Aligned_cols=58 Identities=21% Similarity=0.268 Sum_probs=49.0
Q ss_pred ccchhHHHhHHHHHHHHHHHhccCCCC---CCCCChhhhHHHHHHHHHHHHHHHHHHHhhh
Q 015691 245 SHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEFLSMKL 302 (402)
Q Consensus 245 ~HslaERrRRekIner~~~Lr~LVP~~---~K~tdKAsIL~eAIdYIk~LQ~QVq~Le~~~ 302 (402)
.++..||.|=+-+|..|..||.+||.. +|+..|..+|..||.||++|+.-++.-+..+
T Consensus 112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 112 ARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 466779999999999999999999942 3445999999999999999998777766544
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=94.92 E-value=0.027 Score=60.16 Aligned_cols=56 Identities=25% Similarity=0.283 Sum_probs=46.8
Q ss_pred CccchhHHHhHHHHHHHHHHHhccCCC---CCCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 015691 244 NSHSLAERVRREKISERMRLLQELVPG---CNKITGKAVMLDEIINYVQSLQQQVEFLS 299 (402)
Q Consensus 244 ~~HslaERrRRekIner~~~Lr~LVP~---~~K~tdKAsIL~eAIdYIk~LQ~QVq~Le 299 (402)
...+..||.|=..|||-|++|-.+.=- ..|-.-|..||-.||.-|-.|++||.+-.
T Consensus 528 ~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN 586 (632)
T KOG3910|consen 528 MANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN 586 (632)
T ss_pred hhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence 468999999999999999999887542 23333599999999999999999998754
No 15
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=88.33 E-value=0.25 Score=45.94 Aligned_cols=48 Identities=23% Similarity=0.398 Sum_probs=41.2
Q ss_pred CccchhHHHhHHHHHHHHHHHhccCCC--CCCCCChhhhHHHHHHHHHHHH
Q 015691 244 NSHSLAERVRREKISERMRLLQELVPG--CNKITGKAVMLDEIINYVQSLQ 292 (402)
Q Consensus 244 ~~HslaERrRRekIner~~~Lr~LVP~--~~K~tdKAsIL~eAIdYIk~LQ 292 (402)
--|++-||+|-.-+|+-|..||.++|. .+|. .|.--|+-|-.||-+|=
T Consensus 80 v~anvrerqRtqsLn~AF~~lr~iiptlPsdkl-SkiqtLklA~ryidfl~ 129 (173)
T KOG4447|consen 80 VMANVRERQRTQSLNEAFAALRKIIPTLPSDKL-SKIQTLKLAARYIDFLY 129 (173)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhcCCCCcccc-ccccchhhcccCCchhh
Confidence 369999999999999999999999996 4565 78778888888888774
No 16
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=84.36 E-value=0.82 Score=49.84 Aligned_cols=39 Identities=21% Similarity=0.439 Sum_probs=34.6
Q ss_pred HHHhHHHHHHHHHHHhccCCC----CCCCCChhhhHHHHHHHHH
Q 015691 250 ERVRREKISERMRLLQELVPG----CNKITGKAVMLDEIINYVQ 289 (402)
Q Consensus 250 ERrRRekIner~~~Lr~LVP~----~~K~tdKAsIL~eAIdYIk 289 (402)
-+|-|+|+|-.+..|.+|+|- .+|+ ||.+||.-++-|++
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisKL-DkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISKL-DKLSVLRLSVSYLR 75 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhhh-hhhhhhhhhHHHHH
Confidence 467799999999999999994 5787 99999999999986
No 17
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=79.29 E-value=1.3 Score=49.45 Aligned_cols=43 Identities=30% Similarity=0.398 Sum_probs=36.8
Q ss_pred cchhHHHhHHHHHHHHHHHhccCCCC----CCCCChhhhHHHHHHHHH
Q 015691 246 HSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQ 289 (402)
Q Consensus 246 HslaERrRRekIner~~~Lr~LVP~~----~K~tdKAsIL~eAIdYIk 289 (402)
-.-+.|.||.|=|+-|..|..+||-- ..+ |||+|+--||-|++
T Consensus 50 SRdAARsRRsKEn~~FyeLa~~lPlp~aisshL-DkaSimRLtISyLR 96 (768)
T KOG3558|consen 50 SRDAARSRRSKENEEFYELAKLLPLPAAISSHL-DKASIMRLTISYLR 96 (768)
T ss_pred hhhhhhhhcccchHHHHHHHHhCCCcchhhhhh-hhHHHHHHHHHHHH
Confidence 34468999999999999999999943 333 99999999999986
No 18
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=69.91 E-value=4.8 Score=39.69 Aligned_cols=48 Identities=25% Similarity=0.425 Sum_probs=40.0
Q ss_pred ccchhHHHhHHHHHHHHHHHhccCCC---CCCCCChhhhHHHHHHHHHHHHH
Q 015691 245 SHSLAERVRREKISERMRLLQELVPG---CNKITGKAVMLDEIINYVQSLQQ 293 (402)
Q Consensus 245 ~HslaERrRRekIner~~~Lr~LVP~---~~K~tdKAsIL~eAIdYIk~LQ~ 293 (402)
.-+..||+|=-.+|+-|..||.+||. ..|+ .|+-.|.-+=+||..|+.
T Consensus 75 kaNaRER~RMH~LNdAld~LReviP~~~~~~kl-skIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 75 KANARERTRMHDLNDALDALREVIPHGLHPPKL-SKIETLRLAANYIAALSE 125 (254)
T ss_pred cccchhhccccchhHHHHHhHhhccCcCCCCCC-CcchhHHhhhcchhhhcc
Confidence 45667999999999999999999994 4565 788889888899888764
No 19
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=67.10 E-value=4.7 Score=43.01 Aligned_cols=79 Identities=24% Similarity=0.280 Sum_probs=49.9
Q ss_pred hHHHhHHHHHHHHHHHhccCCCCCCC---CChhhhHHHHHHHHHHHHHHHHHHHhhhhhcCCcccc-cHHHhhhHHHHhh
Q 015691 249 AERVRREKISERMRLLQELVPGCNKI---TGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNL-DIERILSKDILHA 324 (402)
Q Consensus 249 aERrRRekIner~~~Lr~LVP~~~K~---tdKAsIL~eAIdYIk~LQ~QVq~Le~~~~~~~p~~~~-~~~~~l~~~~~~~ 324 (402)
+.|.||++=|..|..|..|+|-...+ .||++|+.-|.-|||--.-=-+-|-+...+..+.... ..+.++-..+++.
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr~vFPeGLGeawg~~S~a~~~~g~~~elgshlLqt 87 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMRNVFPEGLGEAWGASSRADPLDGVDKELGSHLLQT 87 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHHHhcccccchhccCCCccccccchHHHHHHhHHHh
Confidence 57999999999999999999954322 4999999999999985432222233333222222222 3444555555555
Q ss_pred cCC
Q 015691 325 RSG 327 (402)
Q Consensus 325 ~~~ 327 (402)
..|
T Consensus 88 LDG 90 (598)
T KOG3559|consen 88 LDG 90 (598)
T ss_pred hcc
Confidence 444
No 20
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=65.19 E-value=8.1 Score=38.80 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=41.7
Q ss_pred ccchhHHHhHHHHHHHHHHHhccCCCCCC--CCChhhhHHHHHHHHHHHHHHHHH
Q 015691 245 SHSLAERVRREKISERMRLLQELVPGCNK--ITGKAVMLDEIINYVQSLQQQVEF 297 (402)
Q Consensus 245 ~HslaERrRRekIner~~~Lr~LVP~~~K--~tdKAsIL~eAIdYIk~LQ~QVq~ 297 (402)
.-+..||+|=..+|.-|..||.+||..+. +..|---|+-+-.||--|-.....
T Consensus 177 aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~~ 231 (285)
T KOG4395|consen 177 AANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLDL 231 (285)
T ss_pred ccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhcC
Confidence 46788999999999999999999996542 236777788888898877655433
No 21
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=41.91 E-value=44 Score=28.56 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhc
Q 015691 280 MLDEIINYVQSLQQQVEFLSMKLATV 305 (402)
Q Consensus 280 IL~eAIdYIk~LQ~QVq~Le~~~~~~ 305 (402)
=+.++-+-|+.|.+.|..|||+|++.
T Consensus 67 eV~kTh~aIq~LdKtIS~LEMELAaA 92 (95)
T PF13334_consen 67 EVSKTHEAIQSLDKTISSLEMELAAA 92 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777788999999999999999864
No 22
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=40.50 E-value=15 Score=41.57 Aligned_cols=59 Identities=22% Similarity=0.289 Sum_probs=48.0
Q ss_pred CCccchhHHHhHHHHHHHHHHHhccCCCCCCC----CChhhhHHHHHHHHHHHHHHHHHHHhh
Q 015691 243 TNSHSLAERVRREKISERMRLLQELVPGCNKI----TGKAVMLDEIINYVQSLQQQVEFLSMK 301 (402)
Q Consensus 243 ~~~HslaERrRRekIner~~~Lr~LVP~~~K~----tdKAsIL~eAIdYIk~LQ~QVq~Le~~ 301 (402)
...|+-+|.+||..|.-.+..|-.++....++ +-+++-|+.+++||.-++.+...+.++
T Consensus 652 ~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e 714 (856)
T KOG3582|consen 652 PITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEE 714 (856)
T ss_pred cccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchh
Confidence 45899999999999999999999999866544 356667999999999888766555443
No 23
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.18 E-value=46 Score=27.71 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCcc
Q 015691 281 LDEIINYVQSLQQQVEFLSMKLATVNPEL 309 (402)
Q Consensus 281 L~eAIdYIk~LQ~QVq~Le~~~~~~~p~~ 309 (402)
++.||+-|.-||.+|++|.++...+.-+.
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~e~ 41 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQEV 41 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHH
Confidence 67899999999999999999888665443
No 24
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=30.92 E-value=41 Score=31.76 Aligned_cols=43 Identities=30% Similarity=0.359 Sum_probs=30.7
Q ss_pred hHHHhHHHHHHHHHHHhccCCCCCC--CCChhhhHHHHHHHHHHHH
Q 015691 249 AERVRREKISERMRLLQELVPGCNK--ITGKAVMLDEIINYVQSLQ 292 (402)
Q Consensus 249 aERrRRekIner~~~Lr~LVP~~~K--~tdKAsIL~eAIdYIk~LQ 292 (402)
.||.|..++++.+..|+.|+|+... + .+.--|.-+-+||.+|.
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk-~~~ktlr~~~~~~~~~d 73 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGK-RGKKTLRIGTDSIQSLD 73 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCccc-ccccccccCCCchhhHH
Confidence 4889999999999999999998643 2 11122555666766664
No 25
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=29.33 E-value=18 Score=41.01 Aligned_cols=60 Identities=15% Similarity=0.182 Sum_probs=49.5
Q ss_pred cCCccchhHHHhHHHHHHHHHHHhccCCCC----CCCCChhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 015691 242 ATNSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQQQVEFLSMKLAT 304 (402)
Q Consensus 242 a~~~HslaERrRRekIner~~~Lr~LVP~~----~K~tdKAsIL~eAIdYIk~LQ~QVq~Le~~~~~ 304 (402)
....|+-++||||-.+-+++..|-+|.|.. .+++.+++||. +-|+.+|+.-+.+.++...
T Consensus 787 v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~~ 850 (856)
T KOG3582|consen 787 VSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIEG 850 (856)
T ss_pred eecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhhh
Confidence 345789999999999999999999999954 45568999999 8889999888777765543
No 26
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=28.65 E-value=75 Score=26.79 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCcc
Q 015691 281 LDEIINYVQSLQQQVEFLSMKLATVNPEL 309 (402)
Q Consensus 281 L~eAIdYIk~LQ~QVq~Le~~~~~~~p~~ 309 (402)
++.|||-|.-||.+|++|.++...+..+.
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~e~ 41 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQEV 41 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999988776553
No 27
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=27.42 E-value=1.1e+02 Score=23.76 Aligned_cols=41 Identities=20% Similarity=0.386 Sum_probs=32.6
Q ss_pred HHhHHHHHHHHHHHhccCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 015691 251 RVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLS 299 (402)
Q Consensus 251 RrRRekIner~~~Lr~LVP~~~K~tdKAsIL~eAIdYIk~LQ~QVq~Le 299 (402)
|+-|-.+...+.++..|+-- .+ .++|.+||+.+-.+++.++
T Consensus 17 R~~RHD~~NhLqvI~gllql-g~-------~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLLQL-GK-------YEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-T--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CC-------HHHHHHHHHHHHHHHHHHH
Confidence 77788888889999888752 22 4788999999999998874
No 28
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=26.50 E-value=93 Score=25.38 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcC
Q 015691 281 LDEIINYVQSLQQQVEFLSMKLATVN 306 (402)
Q Consensus 281 L~eAIdYIk~LQ~QVq~Le~~~~~~~ 306 (402)
++.||+-|.-||.+|+.|..+...+.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 57899999999999999998865543
No 29
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=25.74 E-value=36 Score=35.07 Aligned_cols=47 Identities=26% Similarity=0.429 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHhccCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHhhhhhcCCccc
Q 015691 251 RVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELN 310 (402)
Q Consensus 251 RrRRekIner~~~Lr~LVP~~~K~tdKAsIL~eAIdYIk~LQ~QVq~Le~~~~~~~p~~~ 310 (402)
|+|--|+-..-.+-|. |.++ .| +|||-|+.+|..||.+..+|-.+++
T Consensus 290 rKRevRLmKNREAARE----CRRK-KK--------EYVKCLENRVAVLENQNKaLIEELK 336 (348)
T KOG3584|consen 290 RKREVRLMKNREAARE----CRRK-KK--------EYVKCLENRVAVLENQNKALIEELK 336 (348)
T ss_pred hHHHHHHHhhHHHHHH----HHHh-Hh--------HHHHHHHhHHHHHhcccHHHHHHHH
Done!