BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015693
(402 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B77|A Chain A, Crystal Structure Of A Ph Domain Containing Bacterial
Protein (Exig_2160) From Exiguobacterium Sibiricum
255-15 At 2.42 A Resolution
pdb|3B77|B Chain B, Crystal Structure Of A Ph Domain Containing Bacterial
Protein (Exig_2160) From Exiguobacterium Sibiricum
255-15 At 2.42 A Resolution
pdb|3B77|C Chain C, Crystal Structure Of A Ph Domain Containing Bacterial
Protein (Exig_2160) From Exiguobacterium Sibiricum
255-15 At 2.42 A Resolution
pdb|3B77|D Chain D, Crystal Structure Of A Ph Domain Containing Bacterial
Protein (Exig_2160) From Exiguobacterium Sibiricum
255-15 At 2.42 A Resolution
pdb|3B77|E Chain E, Crystal Structure Of A Ph Domain Containing Bacterial
Protein (Exig_2160) From Exiguobacterium Sibiricum
255-15 At 2.42 A Resolution
pdb|3B77|F Chain F, Crystal Structure Of A Ph Domain Containing Bacterial
Protein (Exig_2160) From Exiguobacterium Sibiricum
255-15 At 2.42 A Resolution
Length = 193
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 83 ERETLEVLKELEATKMIIEELKLKLQKEASEVNATLESKLVNENVAADLNSGNENMPPVL 142
+++ LE +K+L + I E + + QK N++L + + L G+ N+P
Sbjct: 104 DKKQLEHVKDLYKALLAIAEKQYEGQKXLEFANSSLNHSV---TILGGLRQGDXNVPQTF 160
Query: 143 KEVQKDSHESLEGASH 158
K++ ++S + L+G +
Sbjct: 161 KDLSQESFDWLQGHYY 176
>pdb|1QDN|A Chain A, Amino Terminal Domain Of The N-Ethylmaleimide Sensitive
Fusion Protein (Nsf)
pdb|1QDN|B Chain B, Amino Terminal Domain Of The N-Ethylmaleimide Sensitive
Fusion Protein (Nsf)
pdb|1QDN|C Chain C, Amino Terminal Domain Of The N-Ethylmaleimide Sensitive
Fusion Protein (Nsf)
Length = 204
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 157 SHNLVGSLNTHPSSVPGLILMELKQAK 183
+H + +L THPS VPG + L Q K
Sbjct: 43 NHKYIFTLRTHPSVVPGSVAFSLPQRK 69
>pdb|1QCS|A Chain A, N-Terminal Domain Of N-Ethylmaleimide Sensitive Factor
(Nsf)
Length = 211
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 157 SHNLVGSLNTHPSSVPGLILMELKQAK 183
+H + +L THPS VPG + L Q K
Sbjct: 46 NHKYIFTLRTHPSVVPGSVAFSLPQRK 72
>pdb|3G64|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From
Streptomyces Coelicolor A3(2)
pdb|3G64|B Chain B, Crystal Structure Of Putative Enoyl-Coa Hydratase From
Streptomyces Coelicolor A3(2)
pdb|3G64|C Chain C, Crystal Structure Of Putative Enoyl-Coa Hydratase From
Streptomyces Coelicolor A3(2)
Length = 279
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 332 SDGLSGVLSPKPEGVVTLTYEEYSSLTCKAQD-AEELSKKRVVDAVIQVDEAN 383
+DG++ V +P+ + LT+E Y+ L +D ELS++R V A++ E
Sbjct: 24 TDGVATVTLARPDKLNALTFEAYADL----RDLLAELSRRRAVRALVLAGEGR 72
>pdb|2Z4E|B Chain B, Crystal Structure Of D-dimer From Human Fibrin Complexed
With Gly-his- Arg-pro-tyr-amide
pdb|2Z4E|E Chain E, Crystal Structure Of D-dimer From Human Fibrin Complexed
With Gly-his- Arg-pro-tyr-amide
Length = 326
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 68 VEEQASLLEK-DLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLE 119
V E +S LEK L + E + L + I+E L+ K+QK S+V+A +E
Sbjct: 6 VNEYSSELEKHQLYIDETVNSNIPTNLRVLRSILENLRSKIQKLESDVSAQME 58
>pdb|3E1I|B Chain B, Crystal Structure Of Bbetad432a Variant Fibrinogen
Fragment D With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|3E1I|E Chain E, Crystal Structure Of Bbetad432a Variant Fibrinogen
Fragment D With The Peptide Ligand Gly-His-Arg-Pro-Amide
Length = 328
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 68 VEEQASLLEK-DLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLE 119
V E +S LEK L + E + L + I+E L+ K+QK S+V+A +E
Sbjct: 6 VNEYSSELEKHQLYIDETVNSNIPTNLRVLRSILENLRSKIQKLESDVSAQME 58
>pdb|1FZA|B Chain B, Crystal Structure Of Fibrinogen Fragment D
pdb|1FZA|E Chain E, Crystal Structure Of Fibrinogen Fragment D
pdb|1FZB|B Chain B, Crystal Structure Of Crosslinked Fragment D
pdb|1FZB|E Chain E, Crystal Structure Of Crosslinked Fragment D
pdb|1FZC|B Chain B, Crystal Structure Of Fragment Double-d From Human Fibrin
With Two Different Bound Ligands
pdb|1FZC|E Chain E, Crystal Structure Of Fragment Double-d From Human Fibrin
With Two Different Bound Ligands
pdb|1FZE|B Chain B, Crystal Structure Of Fragment Double-D From Human Fibrin
pdb|1FZE|E Chain E, Crystal Structure Of Fragment Double-D From Human Fibrin
pdb|1FZF|B Chain B, Crystal Structure Of Fragment Double-D From Human Fibrin
With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|1FZF|E Chain E, Crystal Structure Of Fragment Double-D From Human Fibrin
With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|1FZG|B Chain B, Crystal Structure Of Fragment D From Human Fibrinogen With
The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|1FZG|E Chain E, Crystal Structure Of Fragment D From Human Fibrinogen With
The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|1N86|B Chain B, Crystal Structure Of Human D-Dimer From Cross-Linked
Fibrin Complexed With Gpr And Ghrpldk Peptide Ligands.
pdb|1N86|E Chain E, Crystal Structure Of Human D-Dimer From Cross-Linked
Fibrin Complexed With Gpr And Ghrpldk Peptide Ligands.
pdb|1N8E|B Chain B, Fragment Double-D From Human Fibrin
pdb|1N8E|E Chain E, Fragment Double-D From Human Fibrin
pdb|2H43|B Chain B, Crystal Structure Of Human Fragment D Complexed With
Ala-His-Arg-Pro- Amide
pdb|2H43|E Chain E, Crystal Structure Of Human Fragment D Complexed With
Ala-His-Arg-Pro- Amide
pdb|2HOD|B Chain B, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-hydroxypro-arg-pro-amide
pdb|2HOD|E Chain E, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-hydroxypro-arg-pro-amide
pdb|2HOD|H Chain H, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-hydroxypro-arg-pro-amide
pdb|2HOD|K Chain K, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-hydroxypro-arg-pro-amide
pdb|2HPC|B Chain B, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-Pro-Arg-Pro-Amide.
pdb|2HPC|E Chain E, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-Pro-Arg-Pro-Amide.
pdb|2HPC|H Chain H, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-Pro-Arg-Pro-Amide.
pdb|2HPC|K Chain K, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-Pro-Arg-Pro-Amide.
pdb|2HLO|B Chain B, Crystal Structure Of Fragment D-Dimer From Human Fibrin
Complexed With Gly-Hydroxypro-Arg-Pro-Amide
pdb|2HLO|E Chain E, Crystal Structure Of Fragment D-Dimer From Human Fibrin
Complexed With Gly-Hydroxypro-Arg-Pro-Amide
pdb|2Q9I|B Chain B, Crystal Structure Of D-dimer From Human Fibrin Complexed
With Met-his- Arg-pro-tyr-amide.
pdb|2Q9I|E Chain E, Crystal Structure Of D-dimer From Human Fibrin Complexed
With Met-his- Arg-pro-tyr-amide.
pdb|2XNX|B Chain B, Bc1 Fragment Of Streptococcal M1 Protein In Complex With
Human Fibrinogen
pdb|2XNX|E Chain E, Bc1 Fragment Of Streptococcal M1 Protein In Complex With
Human Fibrinogen
pdb|2XNX|H Chain H, Bc1 Fragment Of Streptococcal M1 Protein In Complex With
Human Fibrinogen
pdb|2XNX|K Chain K, Bc1 Fragment Of Streptococcal M1 Protein In Complex With
Human Fibrinogen
pdb|2XNY|B Chain B, A Fragment Of Streptococcal M1 Protein In Complex With
Human Fibrinogen
pdb|2XNY|E Chain E, A Fragment Of Streptococcal M1 Protein In Complex With
Human Fibrinogen
Length = 328
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 68 VEEQASLLEK-DLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLE 119
V E +S LEK L + E + L + I+E L+ K+QK S+V+A +E
Sbjct: 6 VNEYSSELEKHQLYIDETVNSNIPTNLRVLRSILENLRSKIQKLESDVSAQME 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.305 0.123 0.319
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,245,563
Number of Sequences: 62578
Number of extensions: 319015
Number of successful extensions: 722
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 702
Number of HSP's gapped (non-prelim): 42
length of query: 402
length of database: 14,973,337
effective HSP length: 101
effective length of query: 301
effective length of database: 8,652,959
effective search space: 2604540659
effective search space used: 2604540659
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 52 (24.6 bits)