Query 015693
Match_columns 402
No_of_seqs 150 out of 175
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 08:41:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015693.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015693hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05701 WEMBL: Weak chloropla 100.0 6.2E-68 1.3E-72 556.1 34.7 371 27-401 1-512 (522)
2 PF05701 WEMBL: Weak chloropla 97.9 0.0041 8.8E-08 66.6 25.4 237 63-330 218-508 (522)
3 TIGR02169 SMC_prok_A chromosom 96.0 3.2 6.8E-05 47.6 25.8 51 261-311 448-498 (1164)
4 COG1196 Smc Chromosome segrega 95.9 5.4 0.00012 47.0 30.1 33 367-399 974-1006(1163)
5 TIGR02169 SMC_prok_A chromosom 95.6 4.3 9.4E-05 46.5 24.8 21 63-83 258-278 (1164)
6 COG1579 Zn-ribbon protein, pos 94.5 5.4 0.00012 39.2 19.4 67 262-328 90-156 (239)
7 PF00261 Tropomyosin: Tropomyo 94.1 6 0.00013 38.2 20.3 221 63-314 8-229 (237)
8 KOG0977 Nuclear envelope prote 94.1 7.7 0.00017 42.3 20.4 68 172-239 150-217 (546)
9 KOG0971 Microtubule-associated 94.0 8.1 0.00018 44.4 20.7 135 178-312 372-520 (1243)
10 KOG0996 Structural maintenance 93.3 22 0.00047 42.1 23.2 129 174-338 490-618 (1293)
11 COG1196 Smc Chromosome segrega 93.3 22 0.00048 42.0 26.2 156 175-330 756-918 (1163)
12 TIGR02168 SMC_prok_B chromosom 93.0 20 0.00044 41.0 31.7 16 64-79 678-693 (1179)
13 TIGR02168 SMC_prok_B chromosom 92.4 24 0.00053 40.3 32.5 47 63-109 670-716 (1179)
14 KOG0161 Myosin class II heavy 91.3 43 0.00093 41.9 23.5 47 65-111 1268-1314(1930)
15 KOG0996 Structural maintenance 90.9 40 0.00087 40.0 31.3 179 195-382 904-1090(1293)
16 TIGR00606 rad50 rad50. This fa 90.9 39 0.00084 40.5 22.6 44 265-308 885-928 (1311)
17 KOG0250 DNA repair protein RAD 90.1 45 0.00097 39.2 21.5 56 175-230 753-808 (1074)
18 PF10174 Cast: RIM-binding pro 89.8 8.4 0.00018 43.8 15.1 135 172-315 12-154 (775)
19 PRK11637 AmiB activator; Provi 89.8 28 0.00061 36.3 20.1 71 175-245 52-122 (428)
20 KOG0933 Structural maintenance 88.8 55 0.0012 38.4 25.0 197 63-313 677-874 (1174)
21 COG1579 Zn-ribbon protein, pos 88.6 26 0.00057 34.5 16.5 132 174-319 28-161 (239)
22 PF12128 DUF3584: Protein of u 88.4 63 0.0014 38.5 25.3 78 170-247 600-677 (1201)
23 KOG0977 Nuclear envelope prote 87.9 24 0.00051 38.7 16.3 123 172-294 94-216 (546)
24 PF10498 IFT57: Intra-flagella 86.7 8.2 0.00018 40.0 11.7 51 196-246 264-314 (359)
25 PRK02224 chromosome segregatio 82.4 94 0.002 35.2 30.0 46 64-111 181-226 (880)
26 PRK04778 septation ring format 81.4 87 0.0019 34.2 21.3 158 172-330 258-424 (569)
27 PF07926 TPR_MLP1_2: TPR/MLP1/ 81.3 28 0.00061 30.6 11.2 48 261-315 59-106 (132)
28 KOG0971 Microtubule-associated 80.4 1.3E+02 0.0027 35.4 28.9 120 269-399 397-519 (1243)
29 PRK09039 hypothetical protein; 78.9 56 0.0012 33.5 14.1 20 299-318 168-187 (343)
30 PF07888 CALCOCO1: Calcium bin 78.4 1.1E+02 0.0024 33.6 26.7 39 73-111 139-177 (546)
31 PRK11637 AmiB activator; Provi 77.7 95 0.0021 32.4 25.2 46 63-108 47-92 (428)
32 PRK02224 chromosome segregatio 75.5 1.5E+02 0.0033 33.6 27.5 38 174-211 409-446 (880)
33 PF00261 Tropomyosin: Tropomyo 74.6 41 0.00088 32.5 11.1 19 263-281 94-112 (237)
34 PF07888 CALCOCO1: Calcium bin 74.0 1.5E+02 0.0032 32.8 17.2 34 350-383 369-403 (546)
35 KOG0250 DNA repair protein RAD 73.4 2E+02 0.0044 34.1 22.6 44 172-215 318-361 (1074)
36 PF09730 BicD: Microtubule-ass 73.3 89 0.0019 35.5 14.7 107 174-301 38-147 (717)
37 PF08317 Spc7: Spc7 kinetochor 73.1 1.1E+02 0.0023 31.1 14.2 47 267-313 222-268 (325)
38 PF10473 CENP-F_leu_zip: Leuci 72.9 74 0.0016 28.9 17.9 61 185-245 11-71 (140)
39 PF00038 Filament: Intermediat 72.6 1E+02 0.0022 30.4 23.2 47 67-113 51-97 (312)
40 TIGR00606 rad50 rad50. This fa 71.9 2.3E+02 0.005 34.2 29.5 123 172-294 634-784 (1311)
41 KOG0933 Structural maintenance 71.7 2.2E+02 0.0047 33.8 25.5 142 176-317 314-455 (1174)
42 KOG0994 Extracellular matrix g 70.6 2.5E+02 0.0054 34.0 20.2 67 179-245 1534-1603(1758)
43 PF12718 Tropomyosin_1: Tropom 70.4 83 0.0018 28.4 14.6 103 203-305 19-124 (143)
44 PRK04863 mukB cell division pr 69.4 2.9E+02 0.0062 34.2 23.5 131 178-312 356-486 (1486)
45 PF09726 Macoilin: Transmembra 67.2 1.6E+02 0.0035 33.3 15.1 127 198-331 474-601 (697)
46 KOG0161 Myosin class II heavy 62.5 4.3E+02 0.0092 33.7 30.4 48 64-111 909-956 (1930)
47 PRK03918 chromosome segregatio 59.5 3.1E+02 0.0066 31.1 20.6 10 348-357 444-453 (880)
48 COG4942 Membrane-bound metallo 58.7 2.6E+02 0.0056 29.9 15.8 69 177-245 38-106 (420)
49 PRK15178 Vi polysaccharide exp 58.1 2.6E+02 0.0057 29.9 14.9 31 288-318 350-380 (434)
50 PF10234 Cluap1: Clusterin-ass 57.8 28 0.0006 34.9 6.4 66 180-245 172-237 (267)
51 PF10473 CENP-F_leu_zip: Leuci 57.5 1.5E+02 0.0033 26.9 15.2 48 64-111 18-65 (140)
52 TIGR02680 conserved hypothetic 57.1 4.4E+02 0.0096 32.2 24.3 119 191-315 269-387 (1353)
53 PF09726 Macoilin: Transmembra 56.8 3E+02 0.0065 31.2 14.9 42 265-306 457-498 (697)
54 PF10234 Cluap1: Clusterin-ass 56.8 81 0.0017 31.6 9.4 56 194-249 165-220 (267)
55 PRK12472 hypothetical protein; 56.7 94 0.002 33.8 10.3 60 266-325 202-261 (508)
56 PF05335 DUF745: Protein of un 56.1 1.9E+02 0.004 27.5 13.5 68 174-241 106-173 (188)
57 TIGR01010 BexC_CtrB_KpsE polys 55.4 2.4E+02 0.0052 28.6 14.9 134 191-331 170-320 (362)
58 PRK01156 chromosome segregatio 54.2 3.8E+02 0.0083 30.6 17.7 38 208-245 625-662 (895)
59 COG1842 PspA Phage shock prote 54.1 2.2E+02 0.0047 27.7 16.8 46 174-219 28-73 (225)
60 PF00038 Filament: Intermediat 54.0 2.3E+02 0.0049 27.9 19.5 149 230-381 51-206 (312)
61 KOG0976 Rho/Rac1-interacting s 53.8 4.2E+02 0.0092 31.0 18.2 141 176-330 325-465 (1265)
62 KOG1029 Endocytic adaptor prot 53.7 2.6E+02 0.0057 32.4 13.4 149 179-331 460-613 (1118)
63 KOG0999 Microtubule-associated 53.2 3.7E+02 0.008 30.1 15.4 156 89-296 6-163 (772)
64 PRK04863 mukB cell division pr 52.5 5.5E+02 0.012 31.9 25.1 42 174-215 297-338 (1486)
65 PF15254 CCDC14: Coiled-coil d 51.8 1.7E+02 0.0038 33.6 11.8 55 277-331 489-550 (861)
66 PF08317 Spc7: Spc7 kinetochor 51.5 2.7E+02 0.0059 28.1 14.6 53 263-315 211-263 (325)
67 PF04012 PspA_IM30: PspA/IM30 51.0 2.2E+02 0.0047 26.8 16.0 43 175-217 28-70 (221)
68 PRK10884 SH3 domain-containing 50.4 1.2E+02 0.0026 29.1 9.2 14 203-216 98-111 (206)
69 PF15249 GLTSCR1: Glioma tumor 50.4 9.4 0.0002 32.8 1.6 17 25-41 16-32 (109)
70 PF12128 DUF3584: Protein of u 49.9 5.3E+02 0.011 31.0 26.4 92 226-318 435-526 (1201)
71 COG4942 Membrane-bound metallo 49.9 3.5E+02 0.0077 28.9 25.3 49 63-111 38-86 (420)
72 KOG0995 Centromere-associated 48.5 2.8E+02 0.0061 30.8 12.4 120 174-293 242-364 (581)
73 PF10498 IFT57: Intra-flagella 46.7 2.1E+02 0.0046 29.7 11.0 131 173-306 216-352 (359)
74 PHA02562 46 endonuclease subun 46.4 3.9E+02 0.0084 28.4 22.2 37 265-301 362-398 (562)
75 PF03962 Mnd1: Mnd1 family; I 45.4 2.7E+02 0.0058 26.2 11.3 99 182-291 67-165 (188)
76 PHA02562 46 endonuclease subun 44.9 4.1E+02 0.0089 28.2 19.9 102 175-283 300-401 (562)
77 PF04156 IncA: IncA protein; 44.8 2.5E+02 0.0053 25.7 13.2 137 36-237 49-190 (191)
78 KOG0994 Extracellular matrix g 44.8 6.7E+02 0.015 30.7 22.4 16 27-42 1397-1412(1758)
79 PRK10884 SH3 domain-containing 42.2 1.5E+02 0.0034 28.4 8.6 35 174-208 90-124 (206)
80 PF04728 LPP: Lipoprotein leuc 41.8 1.7E+02 0.0036 22.8 7.3 27 263-289 12-38 (56)
81 PF05335 DUF745: Protein of un 41.3 3.2E+02 0.0069 26.0 16.2 65 259-323 114-178 (188)
82 PF06818 Fez1: Fez1; InterPro 40.6 3.5E+02 0.0075 26.2 13.4 39 174-212 14-52 (202)
83 TIGR01843 type_I_hlyD type I s 39.9 4.1E+02 0.0088 26.8 18.4 30 273-302 201-230 (423)
84 PF03962 Mnd1: Mnd1 family; I 39.3 1.1E+02 0.0025 28.7 7.1 29 172-200 137-165 (188)
85 PF05911 DUF869: Plant protein 39.1 6.6E+02 0.014 29.0 16.1 49 266-314 664-712 (769)
86 COG4372 Uncharacterized protei 38.3 5.3E+02 0.012 27.6 14.6 138 172-309 76-213 (499)
87 KOG0249 LAR-interacting protei 37.5 7E+02 0.015 28.8 14.4 56 172-227 137-192 (916)
88 KOG1853 LIS1-interacting prote 37.4 2.4E+02 0.0052 28.5 9.1 173 45-234 17-201 (333)
89 KOG3478 Prefoldin subunit 6, K 37.3 1.4E+02 0.0031 26.3 6.7 52 172-223 60-115 (120)
90 PF05384 DegS: Sensor protein 36.8 3.5E+02 0.0075 25.1 15.8 116 185-316 10-125 (159)
91 PF05266 DUF724: Protein of un 36.5 3.8E+02 0.0082 25.4 10.6 50 258-307 135-184 (190)
92 PRK15396 murein lipoprotein; P 36.3 1.7E+02 0.0036 24.1 6.7 13 269-281 40-52 (78)
93 PRK09973 putative outer membra 35.9 1.6E+02 0.0034 24.8 6.5 20 265-284 28-47 (85)
94 PF07889 DUF1664: Protein of u 34.7 3.4E+02 0.0073 24.3 10.8 80 195-305 40-119 (126)
95 KOG0964 Structural maintenance 33.7 9E+02 0.02 29.0 18.6 181 64-288 714-895 (1200)
96 PF04582 Reo_sigmaC: Reovirus 33.5 81 0.0018 32.5 5.4 149 185-355 29-181 (326)
97 PRK10476 multidrug resistance 33.2 5.1E+02 0.011 25.9 12.1 22 175-196 84-105 (346)
98 COG1566 EmrA Multidrug resista 32.8 5.9E+02 0.013 26.5 13.4 41 172-212 86-126 (352)
99 PF04111 APG6: Autophagy prote 32.7 5.4E+02 0.012 26.1 11.2 72 261-332 64-135 (314)
100 PF04728 LPP: Lipoprotein leuc 31.8 1.8E+02 0.0039 22.6 5.8 34 263-296 5-38 (56)
101 COG4026 Uncharacterized protei 31.7 5.3E+02 0.011 25.7 13.0 117 58-235 98-214 (290)
102 PF12777 MT: Microtubule-bindi 31.6 4.9E+02 0.011 26.5 10.8 24 193-216 10-33 (344)
103 PRK00409 recombination and DNA 31.3 8.3E+02 0.018 28.0 13.5 40 180-219 505-544 (782)
104 KOG4809 Rab6 GTPase-interactin 30.9 7.9E+02 0.017 27.5 13.9 120 174-294 335-457 (654)
105 smart00787 Spc7 Spc7 kinetocho 29.4 6.2E+02 0.014 25.8 14.9 51 264-314 214-264 (312)
106 PF09730 BicD: Microtubule-ass 29.1 9.3E+02 0.02 27.7 22.8 39 63-108 265-303 (717)
107 KOG0972 Huntingtin interacting 28.8 5.5E+02 0.012 26.5 10.2 56 192-247 267-322 (384)
108 TIGR01069 mutS2 MutS2 family p 28.8 7.9E+02 0.017 28.2 12.8 39 180-218 500-538 (771)
109 PRK00409 recombination and DNA 28.8 8.8E+02 0.019 27.8 13.2 44 199-242 517-560 (782)
110 PF08614 ATG16: Autophagy prot 28.6 4.2E+02 0.0092 24.6 9.1 107 224-330 65-171 (194)
111 PF05911 DUF869: Plant protein 27.6 7.7E+02 0.017 28.5 12.3 15 100-114 511-525 (769)
112 PF12718 Tropomyosin_1: Tropom 27.4 4.6E+02 0.0099 23.6 14.5 19 227-245 81-99 (143)
113 PF07106 TBPIP: Tat binding pr 26.9 1.8E+02 0.0039 26.4 6.1 67 176-247 71-137 (169)
114 PF06160 EzrA: Septation ring 26.6 8.8E+02 0.019 26.6 19.0 129 63-245 25-155 (560)
115 TIGR01069 mutS2 MutS2 family p 26.5 1E+03 0.022 27.3 13.8 37 186-222 499-535 (771)
116 PRK15396 murein lipoprotein; P 26.5 2.5E+02 0.0055 23.1 6.2 34 263-296 27-60 (78)
117 KOG0979 Structural maintenance 26.4 9.3E+02 0.02 28.8 12.6 124 176-306 233-356 (1072)
118 COG2433 Uncharacterized conser 26.3 8.3E+02 0.018 27.6 11.7 25 24-49 295-319 (652)
119 PF05667 DUF812: Protein of un 25.4 9.8E+02 0.021 26.7 16.0 52 185-236 329-380 (594)
120 PF05667 DUF812: Protein of un 25.3 9.8E+02 0.021 26.7 23.4 17 28-44 272-288 (594)
121 PF04849 HAP1_N: HAP1 N-termin 25.1 7.6E+02 0.017 25.4 24.7 48 64-111 63-124 (306)
122 PF14197 Cep57_CLD_2: Centroso 25.0 3.6E+02 0.0077 21.5 7.7 58 226-297 5-62 (69)
123 PRK04778 septation ring format 24.3 9.6E+02 0.021 26.2 24.3 46 63-110 256-301 (569)
124 KOG0018 Structural maintenance 24.2 1.3E+03 0.029 27.8 13.4 49 174-222 217-265 (1141)
125 TIGR03007 pepcterm_ChnLen poly 24.0 8.6E+02 0.019 25.6 17.3 44 202-245 251-294 (498)
126 PF12325 TMF_TATA_bd: TATA ele 23.6 5.1E+02 0.011 22.8 10.0 69 173-245 19-87 (120)
127 PF08826 DMPK_coil: DMPK coile 23.6 3.2E+02 0.0069 21.5 6.0 46 58-104 14-59 (61)
128 PF08826 DMPK_coil: DMPK coile 23.3 2.5E+02 0.0055 22.0 5.4 41 203-243 16-56 (61)
129 KOG3647 Predicted coiled-coil 21.8 3.4E+02 0.0075 27.6 7.2 66 174-246 116-181 (338)
130 PF07453 NUMOD1: NUMOD1 domain 21.7 49 0.0011 22.5 1.0 16 28-43 14-29 (37)
131 PF04111 APG6: Autophagy prote 21.5 8.6E+02 0.019 24.7 13.0 34 212-245 50-83 (314)
132 PF07926 TPR_MLP1_2: TPR/MLP1/ 21.2 5.6E+02 0.012 22.4 14.2 17 193-209 19-35 (132)
133 PF15397 DUF4618: Domain of un 21.1 8.5E+02 0.018 24.4 16.1 119 172-297 83-222 (258)
134 PF10174 Cast: RIM-binding pro 20.4 1.4E+03 0.029 26.6 29.5 31 81-111 361-391 (775)
135 PRK15048 methyl-accepting chem 20.4 1.1E+03 0.023 25.2 13.9 32 302-333 372-408 (553)
136 PRK09973 putative outer membra 20.1 3.2E+02 0.0069 23.0 5.7 39 260-298 30-68 (85)
No 1
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=100.00 E-value=6.2e-68 Score=556.07 Aligned_cols=371 Identities=42% Similarity=0.498 Sum_probs=322.9
Q ss_pred CCCcchHHHHHHhccCccccCCCCCCCCCCccchhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 015693 27 SAPFESVKEAVSRFGGIGYWKPSQHKLSEPEHDMEEVDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLK 106 (402)
Q Consensus 27 ~apf~SVkeAV~~FGg~~~w~~~~~~~~~~~~~~~~~el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~ 106 (402)
+|||+|||+||++|||+++|++| ++++++...+ .+|.++++++++|+++|+++|.+|++||.||+.||++|++|+++
T Consensus 1 ~apf~SVk~Avs~FG~~~~~k~~--~~~e~~~~~e-~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~k 77 (522)
T PF05701_consen 1 SAPFESVKEAVSLFGGSIDWKKH--QSLERVKEKE-TELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLK 77 (522)
T ss_pred CCCChHHHHHHHHcCCccccccC--CchhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999998 4445555555 69999999999999999999999999999999999999999999
Q ss_pred HHHHH-HHhhhhhhhhhhhhh-----------------------------HhhhhcCCCCCCC-----------------
Q 015693 107 LQKEA-SEVNATLESKLVNEN-----------------------------VAADLNSGNENMP----------------- 139 (402)
Q Consensus 107 l~k~~-~e~~a~~d~ela~~~-----------------------------~~~el~~~~~~~~----------------- 139 (402)
|++++ +..++.+|+++++.+ ++++|.+++.++.
T Consensus 78 Le~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~ 157 (522)
T PF05701_consen 78 LEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAAL 157 (522)
T ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 889999999999421 3677777665551
Q ss_pred ------------------------cchhhhhhhhh-hhhhccccccccC-------------------------------
Q 015693 140 ------------------------PVLKEVQKDSH-ESLEGASHNLVGS------------------------------- 163 (402)
Q Consensus 140 ------------------------~~~ke~~~~~~-~~~~~~~e~~~~~------------------------------- 163 (402)
..+++.....+ .|.++. +++++.
T Consensus 158 ~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAe-ee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~ 236 (522)
T PF05701_consen 158 KQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAE-EERIEIAAEREQDAEEWEKELEEAEEELEELKEELEA 236 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111111111 233322 222222
Q ss_pred ---------------------C---CCCC--------------CCchhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 015693 164 ---------------------L---NTHP--------------SSVPGLILMELKQAKLNLSRTTTDLADIRASVESGNK 205 (402)
Q Consensus 164 ---------------------~---~~~~--------------~~~~~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ 205 (402)
+ .... ...++++++||+++|.+|+++++|+++|+.++++|+.
T Consensus 237 ~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ 316 (522)
T PF05701_consen 237 AKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRS 316 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 1348899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccCCCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 015693 206 KLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVL 285 (402)
Q Consensus 206 ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~ 285 (402)
+|+++|.++..++++++++++.|++|+.+|++++++|+.++..+.+.+..+.+|+..|++++.|+++||.++..++.|+.
T Consensus 317 ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~ 396 (522)
T PF05701_consen 317 ELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVE 396 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888766668999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCcceechHhhhhhhhhHHHHH
Q 015693 286 RAISEIEQTKTKIKTAEMRLVAARKMKEAARAAEAVAVAEIKALSYSDGLSGVLSPKPEGVVTLTYEEYSSLTCKAQDAE 365 (402)
Q Consensus 286 k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAAKAsEa~ALaeikaLse~e~~~~~~~~~~~~vITlS~eEY~~Ls~kA~eaE 365 (402)
+++.+++++++.|.|++.||+++++|++|||+||++|+++|++|+++.++.+.+.+++++.||||++||++|++||++++
T Consensus 397 ~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~~~~~~~~~~~Vtls~eEy~~L~~ka~e~e 476 (522)
T PF05701_consen 397 KAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESSSRASDSESSSKVTLSLEEYESLSKKAEEAE 476 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCeeecHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888776555577777999999999999999999
Q ss_pred HhhHhHHHHHHHhHHHHhhhHHHHHHHHHhhhhhhc
Q 015693 366 ELSKKRVVDAVIQVDEANVSKMEILKKVGGSHRRNQ 401 (402)
Q Consensus 366 E~A~kKVaaA~aqVeaak~Se~e~L~KLEea~re~~ 401 (402)
++|+|||++||+||+++|+|++++|+||++++++|.
T Consensus 477 e~a~kkva~A~aqve~ak~se~e~l~kle~~~~e~~ 512 (522)
T PF05701_consen 477 ELAEKKVAAAMAQVEAAKASEKEILEKLEEAMKEIE 512 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999985
No 2
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.95 E-value=0.0041 Score=66.63 Aligned_cols=237 Identities=21% Similarity=0.247 Sum_probs=150.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhhh----hhhhhhh---hHhhhhcCC
Q 015693 63 VDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEAS-EVNATL----ESKLVNE---NVAADLNSG 134 (402)
Q Consensus 63 ~el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~k~~~-e~~a~~----d~ela~~---~~~~el~~~ 134 (402)
.+|...++.+..|..++. ..-++=..|..|...|..|+.+|..... ...... .+..... .+..||...
T Consensus 218 ~~leeae~~l~~L~~e~~----~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~a 293 (522)
T PF05701_consen 218 KELEEAEEELEELKEELE----AAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEA 293 (522)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 356666667777776662 2222334788899999999998877663 222211 0000000 011121111
Q ss_pred CCCCCcchhhhhhhhhhhhhccccccccCCCCCCCCchhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 135 NENMPPVLKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSL 214 (402)
Q Consensus 135 ~~~~~~~~ke~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~L 214 (402)
+.++-.+..+. ... ..+..++..||+.+|.+|..++.......+.|.+|..+|.+.+..|
T Consensus 294 k~~L~~~k~E~-----~~L---------------~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 294 KKELEKAKEEA-----SSL---------------RASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSEL 353 (522)
T ss_pred HHHHHHHHHHH-----HHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence 11111110000 000 1346789999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccCCCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 215 EKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQT 294 (402)
Q Consensus 215 e~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqt 294 (402)
+..+..+......+..|...|.++..+...++..- ..+...+..+..++++++.....+...+.-+..+++.+
T Consensus 354 ea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea-------~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaa 426 (522)
T PF05701_consen 354 EAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEA-------EEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAA 426 (522)
T ss_pred HHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888888888888888887774221 12233455566666666666665555555555555444
Q ss_pred hhhH----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015693 295 KTKI----------------------------------------------KTAEMRLVAARKMKEAARAAEAVAVAEIKA 328 (402)
Q Consensus 295 ka~i----------------------------------------------~TaE~RL~Aa~KE~EAAKAsEa~ALaeika 328 (402)
|+.- ..+..|.-+|.-.++++|+||.-+|..+..
T Consensus 427 KasEa~Ala~ik~l~e~~~~~~~~~~~~~~~Vtls~eEy~~L~~ka~e~ee~a~kkva~A~aqve~ak~se~e~l~kle~ 506 (522)
T PF05701_consen 427 KASEALALAEIKALSESESSSRASDSESSSKVTLSLEEYESLSKKAEEAEELAEKKVAAAMAQVEAAKASEKEILEKLEE 506 (522)
T ss_pred HHHHHHHHHHHHHhhcccccccccccCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4322 125667778888888888888888777766
Q ss_pred hc
Q 015693 329 LS 330 (402)
Q Consensus 329 Ls 330 (402)
+.
T Consensus 507 ~~ 508 (522)
T PF05701_consen 507 AM 508 (522)
T ss_pred HH
Confidence 54
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.97 E-value=3.2 Score=47.60 Aligned_cols=51 Identities=12% Similarity=0.146 Sum_probs=25.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 015693 261 WELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKM 311 (402)
Q Consensus 261 ~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE 311 (402)
..++.+..+.+...........++..++.++...+..+.....++......
T Consensus 448 ~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~ 498 (1164)
T TIGR02169 448 LEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ 498 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555555555555554444433
No 4
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.85 E-value=5.4 Score=46.98 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=18.4
Q ss_pred hhHhHHHHHHHhHHHHhhhHHHHHHHHHhhhhh
Q 015693 367 LSKKRVVDAVIQVDEANVSKMEILKKVGGSHRR 399 (402)
Q Consensus 367 ~A~kKVaaA~aqVeaak~Se~e~L~KLEea~re 399 (402)
-..+|...-..+.+....+...++..+++..++
T Consensus 974 ~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~ 1006 (1163)
T COG1196 974 EVEERYEELKSQREDLEEAKEKLLEVIEELDKE 1006 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666666666666655555443
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.56 E-value=4.3 Score=46.50 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=11.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHh
Q 015693 63 VDIGNVEEQASLLEKDLILKE 83 (402)
Q Consensus 63 ~el~k~~eq~~~~ek~l~~~e 83 (402)
.++..++.++..++..+....
T Consensus 258 ~~l~~~~~~~~~~~~~~~~~~ 278 (1164)
T TIGR02169 258 EEISELEKRLEEIEQLLEELN 278 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555554443
No 6
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.46 E-value=5.4 Score=39.17 Aligned_cols=67 Identities=28% Similarity=0.279 Sum_probs=47.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015693 262 ELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARAAEAVAVAEIKA 328 (402)
Q Consensus 262 ~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAAKAsEa~ALaeika 328 (402)
.+..|..|...++........++..+..+.+.-...+.....++..-.+.+-+++++=..+++.|.-
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e 156 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE 156 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777777777777777777777777777766666666655553
No 7
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.08 E-value=6 Score=38.19 Aligned_cols=221 Identities=17% Similarity=0.203 Sum_probs=126.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh-hHhhhhcCCCCCCCcc
Q 015693 63 VDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLESKLVNE-NVAADLNSGNENMPPV 141 (402)
Q Consensus 63 ~el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~k~~~e~~a~~d~ela~~-~~~~el~~~~~~~~~~ 141 (402)
.+++..++++..++..|..++...-++-.++.+-.+=|..|-..|++......... ..|..- ....+ .-..
T Consensus 8 ~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~-~kL~~~e~~~de-------~er~ 79 (237)
T PF00261_consen 8 DELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEAT-EKLEEAEKRADE-------SERA 79 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHH-HHHHHHHHHHHH-------HCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHH-------HHHH
Confidence 48888889999999998888888888888888888888888777776653221110 000000 00000 0000
Q ss_pred hhhhhhhhhhhhhccccccccCCCCCCCCchhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015693 142 LKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERL 221 (402)
Q Consensus 142 ~ke~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre 221 (402)
.+.. ++. +.. + +-+ ++.+...|++++.-+..+-.. .+-....|.-.-..|+++-++.
T Consensus 80 ~k~l-E~r--~~~-~-eer-----------i~~lE~~l~ea~~~~ee~e~k-------~~E~~rkl~~~E~~Le~aEeR~ 136 (237)
T PF00261_consen 80 RKVL-ENR--EQS-D-EER-----------IEELEQQLKEAKRRAEEAERK-------YEEVERKLKVLEQELERAEERA 136 (237)
T ss_dssp HHHH-HHH--HHH-H-HHH-----------HHHCHHHHHHHHHHHHHHHHH-------HHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HhH--HHH-H-HHH-----------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 000 000 0 001 223334444444433333322 2333444555556677777888
Q ss_pred hhchhccccHHHHHHHHHHhHHHhhhhccCCCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 015693 222 SLNSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTA 301 (402)
Q Consensus 222 ~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~Ta 301 (402)
......|..|+.+|..+...|..+...+.........+-..|..|......+-.-++.+...+.++-..+......+...
T Consensus 137 e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~ 216 (237)
T PF00261_consen 137 EAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKE 216 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999888888754442211122334445666666666666667777666666666666666666666
Q ss_pred HHHHHHHHHHHHH
Q 015693 302 EMRLVAARKMKEA 314 (402)
Q Consensus 302 E~RL~Aa~KE~EA 314 (402)
..+...+.++++.
T Consensus 217 k~~~~~~~~eld~ 229 (237)
T PF00261_consen 217 KEKYKKVQEELDQ 229 (237)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666653
No 8
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.06 E-value=7.7 Score=42.31 Aligned_cols=68 Identities=18% Similarity=0.169 Sum_probs=52.9
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHH
Q 015693 172 PGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTR 239 (402)
Q Consensus 172 ~~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr 239 (402)
++.+..|+..+|.-+....+++..|+.....|+.+|...|..|..-.---.-....|++|..+|.=++
T Consensus 150 l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 150 LSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999998888766443333344556677777776665
No 9
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.99 E-value=8.1 Score=44.40 Aligned_cols=135 Identities=20% Similarity=0.251 Sum_probs=75.1
Q ss_pred HHHHHHHHhhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccC--
Q 015693 178 ELKQAKLNLSRTTTDLADIRA----SVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGS-- 251 (402)
Q Consensus 178 EL~qaK~nL~ka~~El~~i~a----svesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~-- 251 (402)
-|++-..-|.-|.--+.++.+ ..--|.++|++-+.++..++......+..+..+++.+-..+-...++-.+|+.
T Consensus 372 qlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~ 451 (1243)
T KOG0971|consen 372 QLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVE 451 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Confidence 344444444433333444443 33456677777777776665555555555555555555555555444434321
Q ss_pred -CCCccchhHHHHHHhHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 015693 252 -DDTNTMDISWELQRLSSEAEEF---KKMG----DAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMK 312 (402)
Q Consensus 252 -~~~~~~~i~~~Lqql~~EaE~a---K~~a----e~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~ 312 (402)
.-+...+|--.+..|..+..+. +-+- +..++=...+++|+++++.++..++.|..+|.+-+
T Consensus 452 qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~ 520 (1243)
T KOG0971|consen 452 QLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETV 520 (1243)
T ss_pred HHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1112334444444454444333 3332 33344456689999999999999999999987643
No 10
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.29 E-value=22 Score=42.08 Aligned_cols=129 Identities=19% Similarity=0.296 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccCCC
Q 015693 174 LILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDD 253 (402)
Q Consensus 174 s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~ 253 (402)
-.+..+.+++..+.=+-.++..+..-.+.+.+.++..+..|....+........+.+|..+|...+.++..+
T Consensus 490 ~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~-------- 561 (1293)
T KOG0996|consen 490 PLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEK-------- 561 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH--------
Confidence 456667777777777777888888888888888888888888887777777777777777777776665554
Q ss_pred CccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 015693 254 TNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARAAEAVAVAEIKALSYSD 333 (402)
Q Consensus 254 ~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAAKAsEa~ALaeikaLse~e 333 (402)
..+....+.+....+.-+.++++.++.++...... .+.--+|+.|--+-++.
T Consensus 562 -------------~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~---------------~s~~kVl~al~r~kesG 613 (1293)
T KOG0996|consen 562 -------------EKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSS---------------RSRNKVLDALMRLKESG 613 (1293)
T ss_pred -------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------hhhhHHHHHHHHHHHcC
Confidence 22333344444444444455555555555444333 34444556665555555
Q ss_pred CCCCC
Q 015693 334 GLSGV 338 (402)
Q Consensus 334 ~~~~~ 338 (402)
.-+++
T Consensus 614 ~i~Gf 618 (1293)
T KOG0996|consen 614 RIPGF 618 (1293)
T ss_pred CCCcc
Confidence 44443
No 11
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.26 E-value=22 Score=42.04 Aligned_cols=156 Identities=17% Similarity=0.191 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHh-------HHHhhh
Q 015693 175 ILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLK-------LQLAKD 247 (402)
Q Consensus 175 ~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~e-------Leaaka 247 (402)
+..++......|....+.+..+....+.+...+...+..+..+..........+.+|+.+++..+.. +..+..
T Consensus 756 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~ 835 (1163)
T COG1196 756 LQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEE 835 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555444333444444444444444444444444444444444 333321
Q ss_pred hccCCCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 248 ANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARAAEAVAVAEIK 327 (402)
Q Consensus 248 ~E~~~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAAKAsEa~ALaeik 327 (402)
.-.........+...+..+....+.++......+.+...+...+...+.....++.+|..+...+...+..-..+...+.
T Consensus 836 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 915 (1163)
T COG1196 836 EIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLE 915 (1163)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111112344455566677777777777778888888888888888888888888888888888888887777777777
Q ss_pred hhc
Q 015693 328 ALS 330 (402)
Q Consensus 328 aLs 330 (402)
.+.
T Consensus 916 ~l~ 918 (1163)
T COG1196 916 ELE 918 (1163)
T ss_pred HHH
Confidence 653
No 12
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=93.02 E-value=20 Score=40.96 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=6.3
Q ss_pred hhhhHHHHHHHHHHHH
Q 015693 64 DIGNVEEQASLLEKDL 79 (402)
Q Consensus 64 el~k~~eq~~~~ek~l 79 (402)
++..++.++..++..+
T Consensus 678 e~~~l~~~~~~l~~~l 693 (1179)
T TIGR02168 678 EIEELEEKIEELEEKI 693 (1179)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444443333333
No 13
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=92.36 E-value=24 Score=40.29 Aligned_cols=47 Identities=23% Similarity=0.235 Sum_probs=27.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 63 VDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQK 109 (402)
Q Consensus 63 ~el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~k 109 (402)
.++..+..++..++..+...+..--.+-.++.....-++.+..+++.
T Consensus 670 ~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~ 716 (1179)
T TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQ 716 (1179)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777666555444444455555555555554443
No 14
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=91.31 E-value=43 Score=41.90 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 65 IGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEA 111 (402)
Q Consensus 65 l~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~k~~ 111 (402)
..++..+..++.+.++.+|..-..+++.+..-..-|++||.+|+...
T Consensus 1268 ~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~ 1314 (1930)
T KOG0161|consen 1268 RSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEET 1314 (1930)
T ss_pred HHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888999999888888888888999999999988655
No 15
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.94 E-value=40 Score=39.98 Aligned_cols=179 Identities=19% Similarity=0.185 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------hhccccHHHHHHHHHHhHHHhhhhccCCCCccchhHHHHHHhH
Q 015693 195 DIRASVESGNKKLEKERLSLEKTRERLSLN-------SSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLS 267 (402)
Q Consensus 195 ~i~asvesLr~ELekeK~~Le~lREre~~a-------s~~VsSLE~EL~~tr~eLeaaka~E~~~~~~~~~i~~~Lqql~ 267 (402)
.-+..++.++..|.+-...+.++.-....+ ...++.|+.+...++.++..+.......+....++-..+....
T Consensus 904 ~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~ 983 (1293)
T KOG0996|consen 904 AQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAE 983 (1293)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 334455555555555555555444333333 3344445555555555444442211111112223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCc
Q 015693 268 SEAEEFKKMGDAARSEVLRAISEIEQTKT-KIKTAEMRLVAARKMKEAARAAEAVAVAEIKALSYSDGLSGVLSPKPEGV 346 (402)
Q Consensus 268 ~EaE~aK~~ae~ak~E~~k~k~E~Eqtka-~i~TaE~RL~Aa~KE~EAAKAsEa~ALaeikaLse~e~~~~~~~~~~~~v 346 (402)
.-..+++..-...+.++...+.....-++ .|. ++.+|++....+--.+.....=...++-|+-..++ +....
T Consensus 984 ~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId-~~~K~e~~~~~l~e~~~~~~~~~k~~~~l~~~~~t------E~~~~ 1056 (1293)
T KOG0996|consen 984 ESLKEIKKELRDLKSELENIKKSENELKAERID-IENKLEAINGELNEIESKIKQPEKELKKLSLCNMT------ETRPQ 1056 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHhhhhhHHHhhCccccccch------hhccc
Confidence 33334444444444444444444444444 445 77778877777777777666666555555543332 33345
Q ss_pred ceechHhhhhhhhhHHHHHHhhHhHHHHHHHhHHHH
Q 015693 347 VTLTYEEYSSLTCKAQDAEELSKKRVVDAVIQVDEA 382 (402)
Q Consensus 347 ITlS~eEY~~Ls~kA~eaEE~A~kKVaaA~aqVeaa 382 (402)
|++...-|++|-..- -+.....+|+....+++..
T Consensus 1057 ~~~~~~~~Eeleae~--~~~~i~e~i~~lE~~~~~l 1090 (1293)
T KOG0996|consen 1057 IELDVESPEELEAEM--LEDNINEKIALLEKRVEEL 1090 (1293)
T ss_pred cccccCChHHHHhhh--cHhhHHHHHHHHHHHHHHh
Confidence 566667777775443 3444455788888888776
No 16
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.91 E-value=39 Score=40.52 Aligned_cols=44 Identities=9% Similarity=0.023 Sum_probs=19.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 015693 265 RLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAA 308 (402)
Q Consensus 265 ql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa 308 (402)
++..+.+..+......+.++..+..+++-....+..++.++...
T Consensus 885 ~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (1311)
T TIGR00606 885 QFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEEL 928 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444333
No 17
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=90.13 E-value=45 Score=39.21 Aligned_cols=56 Identities=23% Similarity=0.309 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcccc
Q 015693 175 ILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSS 230 (402)
Q Consensus 175 ~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsS 230 (402)
-...+++.+-++..+..+...+....++.+-.|..+-..|..+.+..+.-...+.|
T Consensus 753 ~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s 808 (1074)
T KOG0250|consen 753 KEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRS 808 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 33445566666666666666666677777777777777777776666655555655
No 18
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=89.84 E-value=8.4 Score=43.76 Aligned_cols=135 Identities=13% Similarity=0.202 Sum_probs=68.1
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHH-HHHH-------HHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHH
Q 015693 172 PGLILMELKQAKLNLSRTTTDLADIRA-SVES-------GNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQ 243 (402)
Q Consensus 172 ~~s~~~EL~qaK~nL~ka~~El~~i~a-sves-------Lr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLe 243 (402)
.+.+..||+-.-..|++.++++..||+ -++. ...++..-+..|..+......+...|..|+.+| ++..++.
T Consensus 12 ~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~ 90 (775)
T PF10174_consen 12 NERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELN 90 (775)
T ss_pred HHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHH
Confidence 346677777777777777777777665 1222 222233333334444444456667788888888 7777766
Q ss_pred HhhhhccCCCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 015693 244 LAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAA 315 (402)
Q Consensus 244 aaka~E~~~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAA 315 (402)
-+...-.+.......+.. +......+.....+-+....|+..++ ..+..++.|+...+....++
T Consensus 91 rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~El~~lr-------~~lE~~q~~~e~~q~~l~~~ 154 (775)
T PF10174_consen 91 RLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRELERLR-------KTLEELQLRIETQQQTLDKA 154 (775)
T ss_pred HHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 554321111112222222 44444444444444444444444444 44444444444444444443
No 19
>PRK11637 AmiB activator; Provisional
Probab=89.79 E-value=28 Score=36.34 Aligned_cols=71 Identities=10% Similarity=0.197 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHh
Q 015693 175 ILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLA 245 (402)
Q Consensus 175 ~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaa 245 (402)
+..++++.+..|..+..++..+...+..|..+|......|..+..+.......|..|+.++...+.++...
T Consensus 52 l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 52 IQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444455555554444444443
No 20
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.85 E-value=55 Score=38.42 Aligned_cols=197 Identities=16% Similarity=0.212 Sum_probs=115.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhhhhhhHhhhhcCCCCCCCcc
Q 015693 63 VDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEA-SEVNATLESKLVNENVAADLNSGNENMPPV 141 (402)
Q Consensus 63 ~el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~k~~-~e~~a~~d~ela~~~~~~el~~~~~~~~~~ 141 (402)
.+|+.++.|+...+++|..-|++ |+.|+.+..-..+|+++|+-.. .-......
T Consensus 677 ~~l~~~~~~~~~~q~el~~le~e----L~~le~~~~kf~~l~~ql~l~~~~l~l~~~r---------------------- 730 (1174)
T KOG0933|consen 677 QKLKQAQKELRAIQKELEALERE----LKSLEAQSQKFRDLKQQLELKLHELALLEKR---------------------- 730 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 35566666666666666665554 7888899999999999998665 22111100
Q ss_pred hhhhhhhhhhhhhccccccccCCCCCCCCchhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015693 142 LKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERL 221 (402)
Q Consensus 142 ~ke~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre 221 (402)
. ...+.|-. ......++.++++++.+|.-...-+..-...+..|-+.|...+..-++
T Consensus 731 ---~-~~~e~~~~--------------~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~----- 787 (1174)
T KOG0933|consen 731 ---L-EQNEFHKL--------------LDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRER----- 787 (1174)
T ss_pred ---H-hcChHhhH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHh-----
Confidence 0 01111111 122556788888888888766656666666666677777665554321
Q ss_pred hhchhccccHHHHHHHHHHhHHHhhhhccCCCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 015693 222 SLNSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTA 301 (402)
Q Consensus 222 ~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~Ta 301 (402)
.+..|+.+|+.++.+++.-...=++....-..|.++..++..+..-.+..-+........++.++...++.+..+
T Consensus 788 -----rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~ 862 (1174)
T KOG0933|consen 788 -----RLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKV 862 (1174)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 234466777777777766522111211233445555666666666666666666666666766666666666666
Q ss_pred HHHHHHHHHHHH
Q 015693 302 EMRLVAARKMKE 313 (402)
Q Consensus 302 E~RL~Aa~KE~E 313 (402)
+.-...++.++.
T Consensus 863 ~~~~~~~~~el~ 874 (1174)
T KOG0933|consen 863 EKDVKKAQAELK 874 (1174)
T ss_pred HhHHHHHHHHHH
Confidence 665555555443
No 21
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=88.62 E-value=26 Score=34.47 Aligned_cols=132 Identities=20% Similarity=0.251 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcc--ccHHHHHHHHHHhHHHhhhhccC
Q 015693 174 LILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKV--SSLEEELNQTRLKLQLAKDANGS 251 (402)
Q Consensus 174 s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~V--sSLE~EL~~tr~eLeaaka~E~~ 251 (402)
.+...|+.+++.++..++.+..+...++.|.++...-...|..++++...+.... .+=..+++....+++.++..
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r--- 104 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKER--- 104 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH---
Confidence 5666777777777777777777666666666666665565655555544322221 11122233333333333211
Q ss_pred CCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 015693 252 DDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARAAE 319 (402)
Q Consensus 252 ~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAAKAsE 319 (402)
+..+..+..++....+....+..-++..+..++..+..++.++......+.-..-+-
T Consensus 105 -----------~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~ 161 (239)
T COG1579 105 -----------INSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQEL 161 (239)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333344444444444444455555556666666666666666666555544433
No 22
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=88.35 E-value=63 Score=38.52 Aligned_cols=78 Identities=18% Similarity=0.259 Sum_probs=59.7
Q ss_pred CchhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhh
Q 015693 170 SVPGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKD 247 (402)
Q Consensus 170 ~~~~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka 247 (402)
.++..+..+|+++..-|.........+.......+..++..+..+...+.........+..|+.+....+.++...+.
T Consensus 600 ~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 677 (1201)
T PF12128_consen 600 ASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKE 677 (1201)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777888888888888877777777788888888888887777777777777778888888777777777643
No 23
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=87.93 E-value=24 Score=38.67 Aligned_cols=123 Identities=18% Similarity=0.201 Sum_probs=88.4
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccC
Q 015693 172 PGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGS 251 (402)
Q Consensus 172 ~~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~ 251 (402)
+..+..-|++......+...++..++..++.|+..+.+.-..+...+++.......++.|+++++.++.....+.+...+
T Consensus 94 l~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~ 173 (546)
T KOG0977|consen 94 LATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKR 173 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 55677888888888888888888899999999999998877888889999989999999999999999998887433322
Q ss_pred CCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 252 DDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQT 294 (402)
Q Consensus 252 ~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqt 294 (402)
.......|+..|+.+....++...---.....+..+++++.-.
T Consensus 174 Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~ 216 (546)
T KOG0977|consen 174 LKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFL 216 (546)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2223455555566655555555444444444455555554433
No 24
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=86.71 E-value=8.2 Score=39.98 Aligned_cols=51 Identities=22% Similarity=0.226 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhh
Q 015693 196 IRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAK 246 (402)
Q Consensus 196 i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaak 246 (402)
|..-.+.|..+....+..|..++++-...+..|+.+..+|.+..-+|+.++
T Consensus 264 iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK 314 (359)
T PF10498_consen 264 INNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVK 314 (359)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555553
No 25
>PRK02224 chromosome segregation protein; Provisional
Probab=82.42 E-value=94 Score=35.23 Aligned_cols=46 Identities=13% Similarity=0.189 Sum_probs=25.2
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 64 DIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEA 111 (402)
Q Consensus 64 el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~k~~ 111 (402)
-...++.++..++..+..++. -.+...|.....-+.+|..++....
T Consensus 181 ~~~~~~~~~~~~~~~l~~~~~--~~l~~~l~~~~~~l~el~~~i~~~~ 226 (880)
T PRK02224 181 VLSDQRGSLDQLKAQIEEKEE--KDLHERLNGLESELAELDEEIERYE 226 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667767766666433 2333455555555566655555443
No 26
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=81.44 E-value=87 Score=34.18 Aligned_cols=158 Identities=11% Similarity=0.127 Sum_probs=87.2
Q ss_pred hhhHHHHHHHH-----HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhh
Q 015693 172 PGLILMELKQA-----KLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAK 246 (402)
Q Consensus 172 ~~s~~~EL~qa-----K~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaak 246 (402)
...+...+.++ ..+|..+...+..|..-++.|-+-|+++...-.............+..++.....+..++..++
T Consensus 258 i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~ 337 (569)
T PRK04778 258 IQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVK 337 (569)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555553 3355666667777777777777777777776666655555555556666666666666666663
Q ss_pred hh----ccCCCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 247 DA----NGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARAAEAVA 322 (402)
Q Consensus 247 a~----E~~~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAAKAsEa~A 322 (402)
.. +.-.. ....+...|+.+.............-......+..+.+.....+...+.........+..-+..|.-|
T Consensus 338 ~sY~l~~~e~~-~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eA 416 (569)
T PRK04778 338 QSYTLNESELE-SVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEA 416 (569)
T ss_pred HccccCchhHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 10000 11222233333333333333333333333445555555566666666666666666666667777666
Q ss_pred HHHHHhhc
Q 015693 323 VAEIKALS 330 (402)
Q Consensus 323 LaeikaLs 330 (402)
...++.+.
T Consensus 417 r~kL~~~~ 424 (569)
T PRK04778 417 REKLERYR 424 (569)
T ss_pred HHHHHHHH
Confidence 66665554
No 27
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=81.30 E-value=28 Score=30.65 Aligned_cols=48 Identities=25% Similarity=0.326 Sum_probs=25.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 015693 261 WELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAA 315 (402)
Q Consensus 261 ~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAA 315 (402)
..|..+..+...++ .++..++.+++.++..+...+..|..-+.+++.-
T Consensus 59 ~~L~~lr~e~~~~~-------~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e 106 (132)
T PF07926_consen 59 KELQQLREELQELQ-------QEINELKAEAESAKAELEESEASWEEQKEQLEKE 106 (132)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34555555544444 4445555555555555555666665555555543
No 28
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.39 E-value=1.3e+02 Score=35.35 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCcce
Q 015693 269 EAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARAAEAVAVAEIKALSYSDGLSGVLSPKPEGVVT 348 (402)
Q Consensus 269 EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAAKAsEa~ALaeikaLse~e~~~~~~~~~~~~vIT 348 (402)
+-..+-++.+.-+.|+..++.-.|.-...++.+|+.|---+-.+.||--+|++.- .|.+....-. ..|.
T Consensus 397 d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~----qLtdknlnlE-------ekVk 465 (1243)
T KOG0971|consen 397 DHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVE----QLTDKNLNLE-------EKVK 465 (1243)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHH----HHHhhccCHH-------HHHH
Confidence 3344555566666777777777777777888888888888888899988888753 2332211111 0112
Q ss_pred e---chHhhhhhhhhHHHHHHhhHhHHHHHHHhHHHHhhhHHHHHHHHHhhhhh
Q 015693 349 L---TYEEYSSLTCKAQDAEELSKKRVVDAVIQVDEANVSKMEILKKVGGSHRR 399 (402)
Q Consensus 349 l---S~eEY~~Ls~kA~eaEE~A~kKVaaA~aqVeaak~Se~e~L~KLEea~re 399 (402)
+ .+.+.+.|..--.+--|..+.-+-+-+.+||-+|-..++...+.+.+++-
T Consensus 466 lLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet 519 (1243)
T KOG0971|consen 466 LLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQET 519 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1 22345555555555666677778888999999999999999998887753
No 29
>PRK09039 hypothetical protein; Validated
Probab=78.92 E-value=56 Score=33.52 Aligned_cols=20 Identities=10% Similarity=0.170 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 015693 299 KTAEMRLVAARKMKEAARAA 318 (402)
Q Consensus 299 ~TaE~RL~Aa~KE~EAAKAs 318 (402)
...+.+|..-...+.++.+.
T Consensus 168 ~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 168 RESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444
No 30
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=78.41 E-value=1.1e+02 Score=33.63 Aligned_cols=39 Identities=28% Similarity=0.354 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 73 SLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEA 111 (402)
Q Consensus 73 ~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~k~~ 111 (402)
.-++..+.....++-+.+++....+.-+..|+..+++-+
T Consensus 139 ~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~ 177 (546)
T PF07888_consen 139 QLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLE 177 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445455555555666666665555555555433
No 31
>PRK11637 AmiB activator; Provisional
Probab=77.67 E-value=95 Score=32.42 Aligned_cols=46 Identities=15% Similarity=0.269 Sum_probs=29.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 015693 63 VDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQ 108 (402)
Q Consensus 63 ~el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~ 108 (402)
.+|+.++.++.++++++.......-++..+|....+-|..+..+|.
T Consensus 47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~ 92 (428)
T PRK11637 47 DQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLR 92 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888887777777766666555566665555555555555544
No 32
>PRK02224 chromosome segregation protein; Provisional
Probab=75.49 E-value=1.5e+02 Score=33.62 Aligned_cols=38 Identities=11% Similarity=0.130 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 015693 174 LILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKER 211 (402)
Q Consensus 174 s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK 211 (402)
.+...|+++..++.....++..+++....++.-|+..+
T Consensus 409 ~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 446 (880)
T PRK02224 409 NAEDFLEELREERDELREREAELEATLRTARERVEEAE 446 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555554444443
No 33
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=74.62 E-value=41 Score=32.45 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=9.2
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q 015693 263 LQRLSSEAEEFKKMGDAAR 281 (402)
Q Consensus 263 Lqql~~EaE~aK~~ae~ak 281 (402)
|..+......++..++.+-
T Consensus 94 i~~lE~~l~ea~~~~ee~e 112 (237)
T PF00261_consen 94 IEELEQQLKEAKRRAEEAE 112 (237)
T ss_dssp HHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444445555555544443
No 34
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=74.00 E-value=1.5e+02 Score=32.77 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=16.2
Q ss_pred chHhhhhhhhhHHHHHHhh-HhHHHHHHHhHHHHh
Q 015693 350 TYEEYSSLTCKAQDAEELS-KKRVVDAVIQVDEAN 383 (402)
Q Consensus 350 S~eEY~~Ls~kA~eaEE~A-~kKVaaA~aqVeaak 383 (402)
...+-..|+...+.+++.- .+|-..-..+++-.+
T Consensus 369 ~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~k 403 (546)
T PF07888_consen 369 DKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGK 403 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666665555433 233333334444433
No 35
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=73.39 E-value=2e+02 Score=34.12 Aligned_cols=44 Identities=7% Similarity=0.154 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 172 PGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLE 215 (402)
Q Consensus 172 ~~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le 215 (402)
+..+...+.+.+.+.+-...++..++.++..++.+....+...-
T Consensus 318 ~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~ 361 (1074)
T KOG0250|consen 318 LTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIR 361 (1074)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666665555443
No 36
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=73.35 E-value=89 Score=35.51 Aligned_cols=107 Identities=20% Similarity=0.153 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccCCC
Q 015693 174 LILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDD 253 (402)
Q Consensus 174 s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~ 253 (402)
....||++++..|.+++.|...+....--|+. ....|+.+..+.|.++-..|.+|.|.-
T Consensus 38 ~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~---------------------~~~~~e~~~~~lr~e~ke~K~rE~rll 96 (717)
T PF09730_consen 38 ELENELKQLRQELSNVQAENERLSQLNQELRK---------------------ECEDLELERKRLREEIKEYKFREARLL 96 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666666666555554443322222 233444455555555555555543322
Q ss_pred Cccchh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 015693 254 TNTMDI---SWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTA 301 (402)
Q Consensus 254 ~~~~~i---~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~Ta 301 (402)
.+-++| ...||+.-+-..+...+-+.++-|+..+.+|++.-++.+..+
T Consensus 97 ~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 97 QDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEA 147 (717)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 121121 233555444444444555555555555556665555555544
No 37
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=73.08 E-value=1.1e+02 Score=31.06 Aligned_cols=47 Identities=21% Similarity=0.196 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 015693 267 SSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKE 313 (402)
Q Consensus 267 ~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~E 313 (402)
..+.+..+......+.++..+...++.....+......|..+.+..+
T Consensus 222 ~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 222 KEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444444444444444444433
No 38
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=72.93 E-value=74 Score=28.89 Aligned_cols=61 Identities=21% Similarity=0.243 Sum_probs=37.6
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHh
Q 015693 185 NLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLA 245 (402)
Q Consensus 185 nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaa 245 (402)
.|..+..+...|..-|.+|..+|+-....++.+--....+...|..|+.++..+..++..+
T Consensus 11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L 71 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQL 71 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555566666677777766666666555555555666666777776666666555
No 39
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=72.60 E-value=1e+02 Score=30.35 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 67 NVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEASE 113 (402)
Q Consensus 67 k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~k~~~e 113 (402)
.++.++..+...+...-.++.++..++...+.-+++++.+++.+...
T Consensus 51 ~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~ 97 (312)
T PF00038_consen 51 MYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAE 97 (312)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 44555555555555777888999999999999999999999976433
No 40
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=71.89 E-value=2.3e+02 Score=34.16 Aligned_cols=123 Identities=12% Similarity=0.141 Sum_probs=78.9
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHhhhchhcccc
Q 015693 172 PGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKE---------------------RLSLEKTRERLSLNSSKVSS 230 (402)
Q Consensus 172 ~~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELeke---------------------K~~Le~lREre~~as~~VsS 230 (402)
++..-.-|.+++..+.++..++..+.+....+..=|+.. ..++..++............
T Consensus 634 ~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~~~~~p~~~~~ 713 (1311)
T TIGR00606 634 SQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKS 713 (1311)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHHHhcchhhHHH
Confidence 445666888899999999999999999888888888887 36667777777776667888
Q ss_pred HHHHHHHHHHhHHHhhhhccC-------CCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 231 LEEELNQTRLKLQLAKDANGS-------DDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQT 294 (402)
Q Consensus 231 LE~EL~~tr~eLeaaka~E~~-------~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqt 294 (402)
+...+...+..+..+...... .......+...+.++..+...++...+.....+.+++.+.+.+
T Consensus 714 ~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~ 784 (1311)
T TIGR00606 714 TESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESA 784 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 888888888887777544210 0012333344444444444444444444444444444444443
No 41
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=71.72 E-value=2.2e+02 Score=33.79 Aligned_cols=142 Identities=15% Similarity=0.144 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccCCCCc
Q 015693 176 LMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDDTN 255 (402)
Q Consensus 176 ~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~~~ 255 (402)
..-|...+.+|+..+.++..|+..+..++..|.+.+..+.....-..+..-.-+.+..-|...+..++++..---.-+..
T Consensus 314 ~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~ 393 (1174)
T KOG0933|consen 314 ETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDE 393 (1174)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccc
Confidence 34467788899999999999999999999999999988888766666666666777777788888888875332111112
Q ss_pred cchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 015693 256 TMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARA 317 (402)
Q Consensus 256 ~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAAKA 317 (402)
...+...|..+...+-.+......++.....++.++.+.+....|+-.+.....+++.+.+-
T Consensus 394 e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~ 455 (1174)
T KOG0933|consen 394 EKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQN 455 (1174)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHH
Confidence 45667788888888999999999999999999999999998888887776666665555443
No 42
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=70.57 E-value=2.5e+02 Score=34.01 Aligned_cols=67 Identities=13% Similarity=0.175 Sum_probs=31.5
Q ss_pred HHHHHHHhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHh
Q 015693 179 LKQAKLNLSRTTT---DLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLA 245 (402)
Q Consensus 179 L~qaK~nL~ka~~---El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaa 245 (402)
|..-+.+|.++.+ +...-+..++.+....+..+..|+...+-.+.+...|......+..++.-|..+
T Consensus 1534 L~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv 1603 (1758)
T KOG0994|consen 1534 LSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKV 1603 (1758)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344444444333 333444445555555555555555554444444444544444444444444444
No 43
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=70.36 E-value=83 Score=28.36 Aligned_cols=103 Identities=22% Similarity=0.220 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhc---cCCCCccchhHHHHHHhHHHHHHHHHHHHH
Q 015693 203 GNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDAN---GSDDTNTMDISWELQRLSSEAEEFKKMGDA 279 (402)
Q Consensus 203 Lr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E---~~~~~~~~~i~~~Lqql~~EaE~aK~~ae~ 279 (402)
+..+++.-.......-+........++.|+.+|.++...|..++..- ....+....+...++.|-.+++.+......
T Consensus 19 ~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e 98 (143)
T PF12718_consen 19 LEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKE 98 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444555556666677777666666665321 111113346677777788788777777777
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH
Q 015693 280 ARSEVLRAISEIEQTKTKIKTAEMRL 305 (402)
Q Consensus 280 ak~E~~k~k~E~Eqtka~i~TaE~RL 305 (402)
+...++.+-.-+++....+...+.+.
T Consensus 99 ~~ekl~e~d~~ae~~eRkv~~le~~~ 124 (143)
T PF12718_consen 99 TTEKLREADVKAEHFERKVKALEQER 124 (143)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhH
Confidence 77777666666666655555554443
No 44
>PRK04863 mukB cell division protein MukB; Provisional
Probab=69.35 E-value=2.9e+02 Score=34.20 Aligned_cols=131 Identities=14% Similarity=0.132 Sum_probs=68.2
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccCCCCccc
Q 015693 178 ELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTM 257 (402)
Q Consensus 178 EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~~~~~ 257 (402)
.|++....+......+..+..-+..+..++......+..++.+.......+..++.++......+..+..++.-+. ..
T Consensus 356 ~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~--~~ 433 (1486)
T PRK04863 356 DLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCG--LP 433 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CC
Confidence 3333444444444444444444444445555545555555555444455555666666655555555543332221 11
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 015693 258 DISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMK 312 (402)
Q Consensus 258 ~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~ 312 (402)
. +....|..-.+++.........++..+..+....+..+...+..+.....+.
T Consensus 434 ~--~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~ 486 (1486)
T PRK04863 434 D--LTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIA 486 (1486)
T ss_pred C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1 1234455556666666666666666666666666666666666655554443
No 45
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=67.17 E-value=1.6e+02 Score=33.33 Aligned_cols=127 Identities=19% Similarity=0.269 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccCCCCccchhHHHHHHhHHHHHHHHHHH
Q 015693 198 ASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMG 277 (402)
Q Consensus 198 asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~~~~~~i~~~Lqql~~EaE~aK~~a 277 (402)
.-+-.|..-..++|..|..+..++..-.-.=.+|+..|..-|..-...-+.-.+ +.-.+.. .-..-+|..|.-.
T Consensus 474 ~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar----~~~~~~~--~r~e~~e~~r~r~ 547 (697)
T PF09726_consen 474 NKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAAR----ALAQAQA--TRQECAESCRQRR 547 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh----ccccchh--ccchhHHHHHHHH
Confidence 334444444555666666555555544444455555555544332221000000 1000000 1113456677777
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcc
Q 015693 278 DAARSEVLRAISEIEQTKTKIKTAEMRLVAARKM-KEAARAAEAVAVAEIKALSY 331 (402)
Q Consensus 278 e~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE-~EAAKAsEa~ALaeikaLse 331 (402)
..+..|+.+++.|+.+..-.+..+|..++..++- .|--+-.|.+ +..+.++++
T Consensus 548 ~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L-~~aL~amqd 601 (697)
T PF09726_consen 548 RQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVL-MSALSAMQD 601 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH-HHHHHHHHH
Confidence 8888888899888888888888888888766665 4433444433 445555554
No 46
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=62.46 E-value=4.3e+02 Score=33.71 Aligned_cols=48 Identities=27% Similarity=0.307 Sum_probs=24.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 64 DIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEA 111 (402)
Q Consensus 64 el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~k~~ 111 (402)
++..+..+..+.++.....+...-..=.++..-+..++++-..+++.+
T Consensus 909 ~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~ 956 (1930)
T KOG0161|consen 909 ELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLE 956 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555554444444444334555555555555555555555
No 47
>PRK03918 chromosome segregation protein; Provisional
Probab=59.47 E-value=3.1e+02 Score=31.07 Aligned_cols=10 Identities=40% Similarity=0.341 Sum_probs=4.2
Q ss_pred eechHhhhhh
Q 015693 348 TLTYEEYSSL 357 (402)
Q Consensus 348 TlS~eEY~~L 357 (402)
.|+.+.+..|
T Consensus 444 ~L~~~~~~el 453 (880)
T PRK03918 444 ELTEEHRKEL 453 (880)
T ss_pred cCCchhHHHH
Confidence 4444444333
No 48
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=58.68 E-value=2.6e+02 Score=29.95 Aligned_cols=69 Identities=12% Similarity=0.189 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHh
Q 015693 177 MELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLA 245 (402)
Q Consensus 177 ~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaa 245 (402)
..|++...+|.+....+..++-.-..|+++|+..+..+..+..........+..++..+......|..+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 456777777777777777777777777777776666666666655555555555555555555555544
No 49
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=58.12 E-value=2.6e+02 Score=29.93 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=20.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 015693 288 ISEIEQTKTKIKTAEMRLVAARKMKEAARAA 318 (402)
Q Consensus 288 k~E~Eqtka~i~TaE~RL~Aa~KE~EAAKAs 318 (402)
..+.+.-.....-|+..+.+|+.-+|.||.-
T Consensus 350 laeYe~L~le~efAe~~y~sAlaaLE~AR~E 380 (434)
T PRK15178 350 LSLFEDLRLQSEIAKARWESALQTLQQGKLQ 380 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455656666666777777788777777753
No 50
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=57.82 E-value=28 Score=34.86 Aligned_cols=66 Identities=23% Similarity=0.305 Sum_probs=39.6
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHh
Q 015693 180 KQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLA 245 (402)
Q Consensus 180 ~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaa 245 (402)
..+..++..+...+..+.+.-.+|..+|+|-|.+|++.+.|+......=...-.|.++...+|+.+
T Consensus 172 ~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 172 KAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 333555666666666666666666677777666666666666655554455555555555555544
No 51
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=57.54 E-value=1.5e+02 Score=26.92 Aligned_cols=48 Identities=21% Similarity=0.335 Sum_probs=34.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 64 DIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEA 111 (402)
Q Consensus 64 el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~k~~ 111 (402)
+-+.++.++--++.+|.+-+.....+..+.+..|+.|+.|+.+|+.-.
T Consensus 18 e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt 65 (140)
T PF10473_consen 18 EKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELT 65 (140)
T ss_pred hHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777777777777777777777777776443
No 52
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=57.07 E-value=4.4e+02 Score=32.16 Aligned_cols=119 Identities=24% Similarity=0.301 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccCCCCccchhHHHHHHhHHHH
Q 015693 191 TDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEA 270 (402)
Q Consensus 191 ~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~~~~~~i~~~Lqql~~Ea 270 (402)
.++..-....+.++.++......++..+.+.......+..|+.++...+.++..++.- ...+....|.++...+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~------~a~~~~~eL~el~~ql 342 (1353)
T TIGR02680 269 TRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGS------PAYQDAEELERARADA 342 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHHHH
Confidence 3444455566667777777777777777777766666777777777777777776322 2223334555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 015693 271 EEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAA 315 (402)
Q Consensus 271 E~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAA 315 (402)
.++...+......+.....-.++.+..+..++.|+..+.+.++.+
T Consensus 343 ~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~~~ 387 (1353)
T TIGR02680 343 EALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAA 387 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666777777777777777888888887777776553
No 53
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=56.83 E-value=3e+02 Score=31.24 Aligned_cols=42 Identities=19% Similarity=0.334 Sum_probs=29.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 015693 265 RLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLV 306 (402)
Q Consensus 265 ql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~ 306 (402)
.+..+..+.+...+.++..+..+..--++-|..+.++|.||.
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~ 498 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLA 498 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666667777777777777777777777777764
No 54
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=56.78 E-value=81 Score=31.62 Aligned_cols=56 Identities=13% Similarity=0.252 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhc
Q 015693 194 ADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDAN 249 (402)
Q Consensus 194 ~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E 249 (402)
.+|+.++..++.++..-+..+..+...+......|..-..||++++..|+.++...
T Consensus 165 ~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vR 220 (267)
T PF10234_consen 165 KALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVR 220 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35667788888888888899999999999999999999999999999999997664
No 55
>PRK12472 hypothetical protein; Provisional
Probab=56.69 E-value=94 Score=33.77 Aligned_cols=60 Identities=28% Similarity=0.231 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 266 LSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARAAEAVAVAE 325 (402)
Q Consensus 266 l~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAAKAsEa~ALae 325 (402)
...-++++|..+.....|+..+...+......+..++..|.++-|-+.+|+..++.+-++
T Consensus 202 a~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~a~~~l~~adk~l~~a~~d~~~~~a~ 261 (508)
T PRK12472 202 AARAADEAKTAAAAAAREAAPLKASLRKLERAKARADAELKRADKALAAAKTDEAKARAE 261 (508)
T ss_pred HHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhHH
Confidence 444556677777777777777777777777777777777777777777776666655544
No 56
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=56.05 E-value=1.9e+02 Score=27.54 Aligned_cols=68 Identities=16% Similarity=0.248 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHh
Q 015693 174 LILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLK 241 (402)
Q Consensus 174 s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~e 241 (402)
.....|+..+.-|..++..+..+...+...+.+|..-...|+..+.|......++.+...++++|+.-
T Consensus 106 ~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~a 173 (188)
T PF05335_consen 106 QAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKKA 173 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777777777777778888889999999999988888888888877766666666666666543
No 57
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=55.44 E-value=2.4e+02 Score=28.59 Aligned_cols=134 Identities=16% Similarity=0.188 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------chhccccHHHHHHHHHHhHHHhhhhccCCCCccchhHH
Q 015693 191 TDLADIRASVESGNKKLEKERLSLEKTRERLSL---------NSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISW 261 (402)
Q Consensus 191 ~El~~i~asvesLr~ELekeK~~Le~lREre~~---------as~~VsSLE~EL~~tr~eLeaaka~E~~~~~~~~~i~~ 261 (402)
+-..-+..-+..++.++......|..-|.+.+. ....++.|+.+|...+.++..+...- ......
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~---~~~~P~--- 243 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSIT---PEQNPQ--- 243 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CCCCCc---
Confidence 344555666666677776666666665554432 23347778888888888887764321 111112
Q ss_pred HHHHhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015693 262 ELQRLSSEAEEFKKMGDAARS--------EVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARAAEAVAVAEIKALSY 331 (402)
Q Consensus 262 ~Lqql~~EaE~aK~~ae~ak~--------E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAAKAsEa~ALaeikaLse 331 (402)
+..+..+....+........ .......+.+.-.....+++..+..++.-.+.++.....-..-+..++.
T Consensus 244 -v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~~~~~~~~~vi~~ 320 (362)
T TIGR01010 244 -VPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVEADRQQLYLEVISQ 320 (362)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeeeeC
Confidence 12222222222222222111 1233344555666666666667777777777777655555555555553
No 58
>PRK01156 chromosome segregation protein; Provisional
Probab=54.20 E-value=3.8e+02 Score=30.60 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHh
Q 015693 208 EKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLA 245 (402)
Q Consensus 208 ekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaa 245 (402)
++....+...+.+...+...+..++.++...+.++..+
T Consensus 625 e~~~~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l 662 (895)
T PRK01156 625 ENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEI 662 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444555555555555555554
No 59
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=54.09 E-value=2.2e+02 Score=27.74 Aligned_cols=46 Identities=22% Similarity=0.300 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 174 LILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRE 219 (402)
Q Consensus 174 s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lRE 219 (402)
++---+.+++..|.+++..+..+.+..-.|..++.+.....++...
T Consensus 28 ~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~ 73 (225)
T COG1842 28 MLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEE 73 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445556666666666666666666666665555554444443
No 60
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=53.98 E-value=2.3e+02 Score=27.90 Aligned_cols=149 Identities=15% Similarity=0.136 Sum_probs=86.2
Q ss_pred cHHHHHHHHHHhHHHhhhhccCCCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 015693 230 SLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAAR 309 (402)
Q Consensus 230 SLE~EL~~tr~eLeaaka~E~~~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~ 309 (402)
-++.+|...|..+..+..-..+..-...++...+..+....+.....-..+..++..++.+++......-..+.++....
T Consensus 51 ~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~ 130 (312)
T PF00038_consen 51 MYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLK 130 (312)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHH
Confidence 35666666666665552111111112334455566666666666777777888888889999999988889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCC-CCCCC-CCCCcceech----HhhhhhhhhH-HHHHHhhHhHHHHHHHhHHH
Q 015693 310 KMKEAARAAEAVAVAEIKALSYSDGLS-GVLSP-KPEGVVTLTY----EEYSSLTCKA-QDAEELSKKRVVDAVIQVDE 381 (402)
Q Consensus 310 KE~EAAKAsEa~ALaeikaLse~e~~~-~~~~~-~~~~vITlS~----eEY~~Ls~kA-~eaEE~A~kKVaaA~aqVea 381 (402)
.++..-+..=. .+|..|...-... ..... .+..-++-.+ .+|.....+. .+++..-..|+.....++..
T Consensus 131 eEl~fl~~~he---eEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~ 206 (312)
T PF00038_consen 131 EELEFLKQNHE---EEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEK 206 (312)
T ss_dssp HHHHHHHHHHH---HHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhh---hhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccc
Confidence 88887665422 3456665322111 01111 1111112222 4688777666 47777777787776665543
No 61
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=53.84 E-value=4.2e+02 Score=30.98 Aligned_cols=141 Identities=20% Similarity=0.217 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccCCCCc
Q 015693 176 LMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDDTN 255 (402)
Q Consensus 176 ~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~~~ 255 (402)
-|+|+--|+.|.-+.-|...=--+.+-++++|+|.+.. +-.-|.+|+..+...+-+++.+......+.
T Consensus 325 nmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~----------al~dvr~i~e~k~nve~elqsL~~l~aerq-- 392 (1265)
T KOG0976|consen 325 NMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDM----------ALMDVRSIQEKKENVEEELQSLLELQAERQ-- 392 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH----------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 34444444444433333333233455566666665553 334466777777777777777754332211
Q ss_pred cchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015693 256 TMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARAAEAVAVAEIKALS 330 (402)
Q Consensus 256 ~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAAKAsEa~ALaeikaLs 330 (402)
+-...++.--.-.++.|+.-++++.|+.++..-+.+-++...-++..|.--+--.+-++-+-..|+..-+-+.
T Consensus 393 --eQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv 465 (1265)
T KOG0976|consen 393 --EQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMV 465 (1265)
T ss_pred --HHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHH
Confidence 1111233333456778888899999999999999999999999999998877777888888888877654443
No 62
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.65 E-value=2.6e+02 Score=32.40 Aligned_cols=149 Identities=12% Similarity=0.197 Sum_probs=91.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhh----hccCCCC
Q 015693 179 LKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKD----ANGSDDT 254 (402)
Q Consensus 179 L~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka----~E~~~~~ 254 (402)
|.+++..+.+.+.++..+....+.-+++|..-++.|..+.+.+......-+-|+..|.+..+..-.-.. .+..+.
T Consensus 460 l~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~- 538 (1118)
T KOG1029|consen 460 LQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARR- 538 (1118)
T ss_pred hhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHH-
Confidence 345666777777788888888888888888888888888877777777777777777766543211100 000000
Q ss_pred ccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcc
Q 015693 255 NTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARK-MKEAARAAEAVAVAEIKALSY 331 (402)
Q Consensus 255 ~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~K-E~EAAKAsEa~ALaeikaLse 331 (402)
.. -+..+++...++..-++.+.-.+++.-..--...-|....+-...++-.-| +-+--|.+|..+|.-|...-.
T Consensus 539 ~k---e~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~ke~et~~lel~~~ke~ 613 (1118)
T KOG1029|consen 539 KK---ELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLKEAETKALELIGEKEA 613 (1118)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 00 112344555555555555555555555555555555555555555555555 666778888888888876553
No 63
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.22 E-value=3.7e+02 Score=30.09 Aligned_cols=156 Identities=21% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhhhhhhHhhhhcCCCCCCCcchhhhhhhhhhhhhccccccccCCCCC
Q 015693 89 VLKELEATKMIIEELKLKLQKEA-SEVNATLESKLVNENVAADLNSGNENMPPVLKEVQKDSHESLEGASHNLVGSLNTH 167 (402)
Q Consensus 89 vl~eLe~tk~~ve~Lk~~l~k~~-~e~~a~~d~ela~~~~~~el~~~~~~~~~~~ke~~~~~~~~~~~~~e~~~~~~~~~ 167 (402)
+..+++.-+.-|+-|+.+|.... ...|+.+=. +....+- -+..++
T Consensus 6 aeq~ve~lr~eierLT~el~q~t~e~~qaAeyG------------------L~lLeeK---------~~Lkqq------- 51 (772)
T KOG0999|consen 6 AEQEVEKLRQEIERLTEELEQTTEEKIQAAEYG------------------LELLEEK---------EDLKQQ------- 51 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHH---------HHHHHH-------
Q ss_pred CCCchhhHHHHHHHHHHHhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhh
Q 015693 168 PSSVPGLILMELKQAKLNLSRTTTDLADIRA-SVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAK 246 (402)
Q Consensus 168 ~~~~~~s~~~EL~qaK~nL~ka~~El~~i~a-svesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaak 246 (402)
.+-+..+++-++-+|+.++.-+...++ --.+-++.+.++-+-|+..--++...-..|.-|+.+|.+.|.+|..++
T Consensus 52 ----~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q 127 (772)
T KOG0999|consen 52 ----LEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQ 127 (772)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhccCCCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015693 247 DANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKT 296 (402)
Q Consensus 247 a~E~~~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka 296 (402)
.. ...+.....+++.......-+..+++.|+..+|+
T Consensus 128 ~E--------------~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~Kf 163 (772)
T KOG0999|consen 128 EE--------------NERLEKVHSDLKESNAAVEDQRRRLRDELKEYKF 163 (772)
T ss_pred HH--------------HHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHH
No 64
>PRK04863 mukB cell division protein MukB; Provisional
Probab=52.50 E-value=5.5e+02 Score=31.89 Aligned_cols=42 Identities=12% Similarity=0.147 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 174 LILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLE 215 (402)
Q Consensus 174 s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le 215 (402)
..+..|.....+|.+..+.+..|..-+..|..+.++.+..+.
T Consensus 297 eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyle 338 (1486)
T PRK04863 297 TSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLN 338 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555544433
No 65
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=51.76 E-value=1.7e+02 Score=33.56 Aligned_cols=55 Identities=24% Similarity=0.294 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH-hhcc
Q 015693 277 GDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEA------ARAAEAVAVAEIK-ALSY 331 (402)
Q Consensus 277 ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EA------AKAsEa~ALaeik-aLse 331 (402)
.....-|..++|-|.+++-+.+++..++|.++.||--. -|-+|--=|.+|. .|+.
T Consensus 489 kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~ 550 (861)
T PF15254_consen 489 KQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQN 550 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567888899999999999999999999887543 3455555555553 3443
No 66
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=51.54 E-value=2.7e+02 Score=28.12 Aligned_cols=53 Identities=25% Similarity=0.204 Sum_probs=29.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 015693 263 LQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAA 315 (402)
Q Consensus 263 Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAA 315 (402)
|..+..+....+...+..+.++..+..+...-...|.....+....+.++..+
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555554433
No 67
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=50.99 E-value=2.2e+02 Score=26.79 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 175 ILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKT 217 (402)
Q Consensus 175 ~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~l 217 (402)
+.--+.++..+|.+++..+..+.+.-..|..++..........
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~ 70 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKW 70 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456666666666666666666666666666655544444
No 68
>PRK10884 SH3 domain-containing protein; Provisional
Probab=50.44 E-value=1.2e+02 Score=29.12 Aligned_cols=14 Identities=7% Similarity=0.019 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 015693 203 GNKKLEKERLSLEK 216 (402)
Q Consensus 203 Lr~ELekeK~~Le~ 216 (402)
|..++.+.+..|..
T Consensus 98 le~el~~l~~~l~~ 111 (206)
T PRK10884 98 LENQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344333333333
No 69
>PF15249 GLTSCR1: Glioma tumor suppressor candidate region
Probab=50.36 E-value=9.4 Score=32.75 Aligned_cols=17 Identities=41% Similarity=0.681 Sum_probs=15.4
Q ss_pred ccCCCcchHHHHHHhcc
Q 015693 25 DTSAPFESVKEAVSRFG 41 (402)
Q Consensus 25 Dt~apf~SVkeAV~~FG 41 (402)
|+..||.|+.+||.|.=
T Consensus 16 D~~tPF~s~~DA~~RLL 32 (109)
T PF15249_consen 16 DYKTPFRSLEDAVERLL 32 (109)
T ss_pred CcCCCCCCHHHHHHHhc
Confidence 89999999999999863
No 70
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=49.94 E-value=5.3e+02 Score=30.97 Aligned_cols=92 Identities=21% Similarity=0.201 Sum_probs=66.2
Q ss_pred hccccHHHHHHHHHHhHHHhhhhccCCCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 015693 226 SKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRL 305 (402)
Q Consensus 226 ~~VsSLE~EL~~tr~eLeaaka~E~~~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL 305 (402)
.....+..++.+.+.++..++..-.... ...+....+..+....+.+......+...+..+..+..+.+..-++++..|
T Consensus 435 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 513 (1201)
T PF12128_consen 435 EQLEELQEQREQLKSELAELKQQLKNPQ-YTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEEL 513 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666643322222 445666778888888888888888888888888888888888889998888
Q ss_pred HHHHHHHHHHHHH
Q 015693 306 VAARKMKEAARAA 318 (402)
Q Consensus 306 ~Aa~KE~EAAKAs 318 (402)
..+...+.-.++.
T Consensus 514 ~~~~~~~~~~~~~ 526 (1201)
T PF12128_consen 514 RQARRELEELRAQ 526 (1201)
T ss_pred HHHHHHHHHHHHH
Confidence 8888777776543
No 71
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=49.94 E-value=3.5e+02 Score=28.93 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=39.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 63 VDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEA 111 (402)
Q Consensus 63 ~el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~k~~ 111 (402)
..|+.++.++.++++.+-..-..+.+..++|...+.-|..+..+|-.-+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~ 86 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETA 86 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888888888888888888888888888875443
No 72
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=48.52 E-value=2.8e+02 Score=30.80 Aligned_cols=120 Identities=13% Similarity=0.150 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccCCC
Q 015693 174 LILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDD 253 (402)
Q Consensus 174 s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~ 253 (402)
.+..+|.+.=.++.+--.....++---.+|++++.|-++.+..+..+-......+.-|.+|+...-.+++.++......+
T Consensus 242 ~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk 321 (581)
T KOG0995|consen 242 KTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELK 321 (581)
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433444444455566666667777777888877777777777777788888888888888777754321110
Q ss_pred C--ccchh-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 254 T--NTMDI-SWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQ 293 (402)
Q Consensus 254 ~--~~~~i-~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eq 293 (402)
. ...+| +..+.+++.|.++..+....+..+...+..++=.
T Consensus 322 ~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~ 364 (581)
T KOG0995|consen 322 KQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWE 364 (581)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 00011 2234555555555555555555555554444433
No 73
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=46.73 E-value=2.1e+02 Score=29.74 Aligned_cols=131 Identities=18% Similarity=0.238 Sum_probs=93.0
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccCC
Q 015693 173 GLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSD 252 (402)
Q Consensus 173 ~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~~ 252 (402)
..-..=|+|++........-+...+...+.|..++.+ .|+++..++.........|-.+....+.+|..++..-...
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~---~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~ 292 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISK---TLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQA 292 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666665666666666666666665 5778888888888888888888888888888886543222
Q ss_pred CCccchhHHHHHHhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhHHHHHHHHH
Q 015693 253 DTNTMDISWELQRLSSEAEEFKKMGDAARSE------VLRAISEIEQTKTKIKTAEMRLV 306 (402)
Q Consensus 253 ~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E------~~k~k~E~Eqtka~i~TaE~RL~ 306 (402)
......+...|.+++.+.++.|...+.--.. +.++|+-+-+-|..|.++..|+-
T Consensus 293 s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIG 352 (359)
T PF10498_consen 293 SEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIG 352 (359)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 2256677788889998988888877764222 56777777777777777777764
No 74
>PHA02562 46 endonuclease subunit; Provisional
Probab=46.41 E-value=3.9e+02 Score=28.41 Aligned_cols=37 Identities=11% Similarity=0.125 Sum_probs=15.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 015693 265 RLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTA 301 (402)
Q Consensus 265 ql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~Ta 301 (402)
.+..+.+.+.........++..+..++......+...
T Consensus 362 ~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 398 (562)
T PHA02562 362 KVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSEL 398 (562)
T ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443334444444444444444443333
No 75
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=45.38 E-value=2.7e+02 Score=26.22 Aligned_cols=99 Identities=15% Similarity=0.266 Sum_probs=61.3
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccCCCCccchhHH
Q 015693 182 AKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISW 261 (402)
Q Consensus 182 aK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~~~~~~i~~ 261 (402)
.+..+.+.+.++..++..+..|+.+|+..+..-....+|.. .-.....|+.++.+.+.+|...... +| .
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~-~l~~l~~l~~~~~~l~~el~~~~~~------Dp----~ 135 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREE-LLEELEELKKELKELKKELEKYSEN------DP----E 135 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc------CH----H
Confidence 34445555556666666677777777766555444433333 3445677777777777777754221 33 3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 262 ELQRLSSEAEEFKKMGDAARSEVLRAISEI 291 (402)
Q Consensus 262 ~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~ 291 (402)
.++++..++..++..++.-...+--++.-+
T Consensus 136 ~i~~~~~~~~~~~~~anrwTDNI~~l~~~~ 165 (188)
T PF03962_consen 136 KIEKLKEEIKIAKEAANRWTDNIFSLKSYL 165 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 467888888888888777766665555443
No 76
>PHA02562 46 endonuclease subunit; Provisional
Probab=44.90 E-value=4.1e+02 Score=28.24 Aligned_cols=102 Identities=15% Similarity=0.185 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccCCCC
Q 015693 175 ILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDDT 254 (402)
Q Consensus 175 ~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~~ 254 (402)
..+.|++=..+|..-.+.+............++.+....+..++.........+.++..++...+.++..+.....
T Consensus 300 ~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~---- 375 (562)
T PHA02562 300 RITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFV---- 375 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----
Confidence 4444544333444333333333334446666666777777777777777777788888888888888888844321
Q ss_pred ccchhHHHHHHhHHHHHHHHHHHHHHHHH
Q 015693 255 NTMDISWELQRLSSEAEEFKKMGDAARSE 283 (402)
Q Consensus 255 ~~~~i~~~Lqql~~EaE~aK~~ae~ak~E 283 (402)
++...|.++..+.+.++........+
T Consensus 376 ---~~~~~l~~l~~~l~~~~~~~~~~~ke 401 (562)
T PHA02562 376 ---DNAEELAKLQDELDKIVKTKSELVKE 401 (562)
T ss_pred ---chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233455555555544444444333
No 77
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=44.84 E-value=2.5e+02 Score=25.67 Aligned_cols=137 Identities=18% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHhccCccccCCCCCCCCCCccchhhh-----hhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 36 AVSRFGGIGYWKPSQHKLSEPEHDMEEV-----DIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKE 110 (402)
Q Consensus 36 AV~~FGg~~~w~~~~~~~~~~~~~~~~~-----el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~k~ 110 (402)
.+-+|+++...--.....+..+....+. ++...+.+..++.+++..-+..-.....+|..-+.....+...++
T Consensus 49 g~vL~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~-- 126 (191)
T PF04156_consen 49 GVVLLSLGLLCLLSKRPVQSVRPQQIEEPRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLK-- 126 (191)
T ss_pred HHHHHHHHHHHHHHccccccchHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--
Q ss_pred HHHhhhhhhhhhhhhhHhhhhcCCCCCCCcchhhhhhhhhhhhhccccccccCCCCCCCCchhhHHHHHHHHHHHhhhhh
Q 015693 111 ASEVNATLESKLVNENVAADLNSGNENMPPVLKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQAKLNLSRTT 190 (402)
Q Consensus 111 ~~e~~a~~d~ela~~~~~~el~~~~~~~~~~~ke~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~~~EL~qaK~nL~ka~ 190 (402)
.....+...+.+.....
T Consensus 127 ---------------------------------------------------------------~~~~~l~~l~~~~~~~~ 143 (191)
T PF04156_consen 127 ---------------------------------------------------------------SVEERLDSLDESIKELE 143 (191)
T ss_pred ---------------------------------------------------------------HHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHH
Q 015693 191 TDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQ 237 (402)
Q Consensus 191 ~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~ 237 (402)
.+...+.....-++..+...+..+..+++...-..-.+.+++.-+++
T Consensus 144 ~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 190 (191)
T PF04156_consen 144 KEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQELLEQ 190 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 78
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=44.75 E-value=6.7e+02 Score=30.69 Aligned_cols=16 Identities=38% Similarity=0.405 Sum_probs=7.8
Q ss_pred CCCcchHHHHHHhccC
Q 015693 27 SAPFESVKEAVSRFGG 42 (402)
Q Consensus 27 ~apf~SVkeAV~~FGg 42 (402)
..-|.|-..||++-|+
T Consensus 1397 ~cGg~sC~Ga~t~A~~ 1412 (1758)
T KOG0994|consen 1397 TCGGLSCRGAVTRAGG 1412 (1758)
T ss_pred CccCccccchhcccch
Confidence 3344455555555444
No 79
>PRK10884 SH3 domain-containing protein; Provisional
Probab=42.18 E-value=1.5e+02 Score=28.36 Aligned_cols=35 Identities=9% Similarity=0.151 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 015693 174 LILMELKQAKLNLSRTTTDLADIRASVESGNKKLE 208 (402)
Q Consensus 174 s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELe 208 (402)
++..-|.+.+..|...++++..+.........+|.
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~ 124 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQ 124 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45555666667777777777776665444444443
No 80
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=41.79 E-value=1.7e+02 Score=22.80 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=10.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 263 LQRLSSEAEEFKKMGDAARSEVLRAIS 289 (402)
Q Consensus 263 Lqql~~EaE~aK~~ae~ak~E~~k~k~ 289 (402)
++.|+....++......++.++.-++.
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v~~ak~ 38 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADVQAAKE 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 81
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=41.27 E-value=3.2e+02 Score=25.96 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=51.7
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 259 ISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARAAEAVAV 323 (402)
Q Consensus 259 i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAAKAsEa~AL 323 (402)
|...|+.+..-...+...+..++.++..-.+-++.++..+......|..++.+.+..|.+-..|.
T Consensus 114 L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA~ 178 (188)
T PF05335_consen 114 LKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAAYKAA 178 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446667777788888888888888888888888999999999999999999888876655443
No 82
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=40.63 E-value=3.5e+02 Score=26.18 Aligned_cols=39 Identities=15% Similarity=0.364 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 015693 174 LILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERL 212 (402)
Q Consensus 174 s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~ 212 (402)
.++--|+++-++++.=-.|+..+++..-.++.++..--.
T Consensus 14 LLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~ 52 (202)
T PF06818_consen 14 LLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKES 52 (202)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHH
Confidence 344455555555555555555555555544444443333
No 83
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=39.87 E-value=4.1e+02 Score=26.77 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 015693 273 FKKMGDAARSEVLRAISEIEQTKTKIKTAE 302 (402)
Q Consensus 273 aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE 302 (402)
++.....++.++..+..++.++++.+..++
T Consensus 201 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 230 (423)
T TIGR01843 201 LERERAEAQGELGRLEAELEVLKRQIDELQ 230 (423)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444333
No 84
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=39.26 E-value=1.1e+02 Score=28.69 Aligned_cols=29 Identities=21% Similarity=0.192 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 015693 172 PGLILMELKQAKLNLSRTTTDLADIRASV 200 (402)
Q Consensus 172 ~~s~~~EL~qaK~nL~ka~~El~~i~asv 200 (402)
......++..++..+++-||.+..|..-+
T Consensus 137 i~~~~~~~~~~~~~anrwTDNI~~l~~~~ 165 (188)
T PF03962_consen 137 IEKLKEEIKIAKEAANRWTDNIFSLKSYL 165 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34566667777777777777777776543
No 85
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=39.09 E-value=6.6e+02 Score=28.99 Aligned_cols=49 Identities=12% Similarity=0.177 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 015693 266 LSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEA 314 (402)
Q Consensus 266 l~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EA 314 (402)
+..-...+..++...+..+..+..|++.-|+.-.....++.-..-+++-
T Consensus 664 le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r 712 (769)
T PF05911_consen 664 LETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELER 712 (769)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHh
Confidence 3334445555666667777777777777777777777777665555544
No 86
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=38.30 E-value=5.3e+02 Score=27.64 Aligned_cols=138 Identities=16% Similarity=0.164 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccC
Q 015693 172 PGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGS 251 (402)
Q Consensus 172 ~~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~ 251 (402)
++.|...|...+-+|+-+-.+...+...-+..|.||.+.+.+-+..+++...+.--..+-.-+|-++...-+-++..=..
T Consensus 76 lddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~ 155 (499)
T COG4372 76 LDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKT 155 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 015693 252 DDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAAR 309 (402)
Q Consensus 252 ~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~ 309 (402)
.-+.-..+...++-+-.+-.++...+...+.++..++.+.++..-.-..+..|-.++.
T Consensus 156 l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q 213 (499)
T COG4372 156 LAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQ 213 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 87
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=37.55 E-value=7e+02 Score=28.83 Aligned_cols=56 Identities=20% Similarity=0.271 Sum_probs=40.4
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhc
Q 015693 172 PGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSK 227 (402)
Q Consensus 172 ~~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~ 227 (402)
+-.+..+|.+=-..+.++...-..+-..+.-|..++++..++|.++++++.++...
T Consensus 137 lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh 192 (916)
T KOG0249|consen 137 LPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEH 192 (916)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44556666666666666666666666678888888888888888888888776544
No 88
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=37.44 E-value=2.4e+02 Score=28.46 Aligned_cols=173 Identities=19% Similarity=0.224 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCCccchhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 015693 45 YWKPSQHKLSEPEHDMEEVDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLESKLVN 124 (402)
Q Consensus 45 ~w~~~~~~~~~~~~~~~~~el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~k~~~e~~a~~d~ela~ 124 (402)
+|+..++.....+..+.+ ||+..|+=-.+||++|..- |..|+.-.+-++-=-+.|.-+++....++|.--+.
T Consensus 17 ywk~l~~~ykq~f~~~re-El~EFQegSrE~Eaelesq-------L~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q 88 (333)
T KOG1853|consen 17 YWKLLHHEYKQHFLQMRE-ELNEFQEGSREIEAELESQ-------LDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQ 88 (333)
T ss_pred HHhhhHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --------hhHhhhhcCCCCCCCcchhhhhhhhhhhhhccccccccCCCCCCCCchhhHHHHHHHH---HHHhhhhhhHH
Q 015693 125 --------ENVAADLNSGNENMPPVLKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQA---KLNLSRTTTDL 193 (402)
Q Consensus 125 --------~~~~~el~~~~~~~~~~~ke~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~~~EL~qa---K~nL~ka~~El 193 (402)
+...+.+|.-++.+.--+.+-+++....--+. ...+-++..+---|++| .+.|+.-.+|-
T Consensus 89 ~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErak---------Rati~sleDfeqrLnqAIErnAfLESELdEk 159 (333)
T KOG1853|consen 89 FYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAK---------RATIYSLEDFEQRLNQAIERNAFLESELDEK 159 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhh---------hhhhhhHHHHHHHHHHHHHHHHHHHHHhhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhchhccccHHHH
Q 015693 194 ADIRASVESGNKKLEKERLSLE-KTRERLSLNSSKVSSLEEE 234 (402)
Q Consensus 194 ~~i~asvesLr~ELekeK~~Le-~lREre~~as~~VsSLE~E 234 (402)
..+-.+|-.|+.|-.--+.+|+ +.++.+.--....+|++.|
T Consensus 160 e~llesvqRLkdEardlrqelavr~kq~E~pR~~~Pss~~~e 201 (333)
T KOG1853|consen 160 EVLLESVQRLKDEARDLRQELAVRTKQTERPRIVEPSSVEAE 201 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCccchhhh
No 89
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=37.32 E-value=1.4e+02 Score=26.34 Aligned_cols=52 Identities=19% Similarity=0.379 Sum_probs=41.1
Q ss_pred hhhHHHHHHHHHHHhhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015693 172 PGLILMELKQAKLNLSRTTT----DLADIRASVESGNKKLEKERLSLEKTRERLSL 223 (402)
Q Consensus 172 ~~s~~~EL~qaK~nL~ka~~----El~~i~asvesLr~ELekeK~~Le~lREre~~ 223 (402)
|-.++-+|.+|+.|++|-.+ |+...-.++..+..++.+.+..+..+.+.-..
T Consensus 60 pvLvkqel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q~ 115 (120)
T KOG3478|consen 60 PVLVKQELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQP 115 (120)
T ss_pred chhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 66799999999999988654 77777778888888888888888777665443
No 90
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=36.80 E-value=3.5e+02 Score=25.07 Aligned_cols=116 Identities=19% Similarity=0.195 Sum_probs=84.4
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccCCCCccchhHHHHH
Q 015693 185 NLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQ 264 (402)
Q Consensus 185 nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~~~~~~i~~~Lq 264 (402)
.++.-+++++.| .+..|.+...-+.+|..++.....--..|-.|+..-.++|.+|..+. .....-
T Consensus 10 ~ie~sK~qIf~I---~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS-~~f~~y----------- 74 (159)
T PF05384_consen 10 TIESSKEQIFEI---AEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVS-RNFDRY----------- 74 (159)
T ss_pred HHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhccc-----------
Confidence 345555566665 56778888888888888888888878889999999999999999882 221110
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 015693 265 RLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAAR 316 (402)
Q Consensus 265 ql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAAK 316 (402)
-..+.-.|=-.|...+-.+...++.-.+-+..-+..|.||.-....++-|-
T Consensus 75 -sE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE 125 (159)
T PF05384_consen 75 -SEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAE 125 (159)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122344455556677777888888888888888999999988888887654
No 91
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=36.46 E-value=3.8e+02 Score=25.40 Aligned_cols=50 Identities=26% Similarity=0.395 Sum_probs=29.8
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 015693 258 DISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVA 307 (402)
Q Consensus 258 ~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~A 307 (402)
++-..|-++......++...+....|+..++..+...+..+.-++.+-+.
T Consensus 135 ~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 135 ELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555566666666666666666666666666666665543
No 92
>PRK15396 murein lipoprotein; Provisional
Probab=36.31 E-value=1.7e+02 Score=24.11 Aligned_cols=13 Identities=15% Similarity=0.281 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 015693 269 EAEEFKKMGDAAR 281 (402)
Q Consensus 269 EaE~aK~~ae~ak 281 (402)
..+++...+..++
T Consensus 40 kvdql~~dv~~~~ 52 (78)
T PRK15396 40 KVDQLSNDVNAMR 52 (78)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 93
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=35.91 E-value=1.6e+02 Score=24.76 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=7.2
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 015693 265 RLSSEAEEFKKMGDAARSEV 284 (402)
Q Consensus 265 ql~~EaE~aK~~ae~ak~E~ 284 (402)
+|+++...++..+..+...+
T Consensus 28 qLss~V~~L~~kvdql~~dv 47 (85)
T PRK09973 28 QLASNVQTLNAKIARLEQDM 47 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 94
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=34.72 E-value=3.4e+02 Score=24.29 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccCCCCccchhHHHHHHhHHHHHHHH
Q 015693 195 DIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFK 274 (402)
Q Consensus 195 ~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~~~~~~i~~~Lqql~~EaE~aK 274 (402)
.+..++.++-+.|++.-.+|..+|..+. .+|+.+ -..|++...=.++.+
T Consensus 40 ~m~~A~~~v~kql~~vs~~l~~tKkhLs-----------------qRId~v--------------d~klDe~~ei~~~i~ 88 (126)
T PF07889_consen 40 SMSDAVASVSKQLEQVSESLSSTKKHLS-----------------QRIDRV--------------DDKLDEQKEISKQIK 88 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHH--------------HhhHHHHHHHHHHHH
Confidence 4555677777777777776666665433 122222 112223333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 015693 275 KMGDAARSEVLRAISEIEQTKTKIKTAEMRL 305 (402)
Q Consensus 275 ~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL 305 (402)
......+..+.....++......+.+++.+|
T Consensus 89 ~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 89 DEVTEVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556666666666666666666665
No 95
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=33.74 E-value=9e+02 Score=28.98 Aligned_cols=181 Identities=19% Similarity=0.178 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhhhhcCCC-CCCCcch
Q 015693 64 DIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLESKLVNENVAADLNSGN-ENMPPVL 142 (402)
Q Consensus 64 el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~k~~~e~~a~~d~ela~~~~~~el~~~~-~~~~~~~ 142 (402)
++..++.+...|..++-..-.++..|-+.|+.-.+.+++++..|....+...... ++|.++- .++.|..
T Consensus 714 ~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e----------~el~sel~sqLt~ee 783 (1200)
T KOG0964|consen 714 DRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFE----------SELGSELFSQLTPEE 783 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHH----------HHHhHHHHhhcCHHH
Q ss_pred hhhhhhhhhhhhccccccccCCCCCCCCchhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015693 143 KEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLS 222 (402)
Q Consensus 143 ke~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~ 222 (402)
.+. +.+.-.+.+++.-.|.....+-..|..-...|...|.. +.-...-.=.-.
T Consensus 784 ~e~--------------------------l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~-kL~~r~~~l~~e 836 (1200)
T KOG0964|consen 784 LER--------------------------LSKLNKEINKLSVKLRALREERIDIETRKTALEANLNT-KLYKRVNELEQE 836 (1200)
T ss_pred HHH--------------------------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHH
Q ss_pred hchhccccHHHHHHHHHHhHHHhhhhccCCCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 015693 223 LNSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAI 288 (402)
Q Consensus 223 ~as~~VsSLE~EL~~tr~eLeaaka~E~~~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k 288 (402)
..++-..++..+|.-++++|..+ +.+.. ...+.|.-+....+..+......+.+..+++
T Consensus 837 i~~~~d~~~~~el~~~~~el~~~---~~~~e----~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~ 895 (1200)
T KOG0964|consen 837 IGDLNDSSRRSELELEKSELESE---EKRVE----AAILELKTLQDSIDKKKAEIKEIKKELEKAK 895 (1200)
T ss_pred hhhcccccchhhhhHHHHHHHHH---HHHHH----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
No 96
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=33.54 E-value=81 Score=32.50 Aligned_cols=149 Identities=21% Similarity=0.239 Sum_probs=38.7
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccCCCCccchhHHHHH
Q 015693 185 NLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQ 264 (402)
Q Consensus 185 nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~~~~~~i~~~Lq 264 (402)
+|.-..+.|..|..++.+|+.-+.-....+..+--+..-....|.++..+|+.....+..++.-=-...+...++...+.
T Consensus 29 DLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls 108 (326)
T PF04582_consen 29 DLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLS 108 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhh
Confidence 33444445555555555665555555555555555555555566666666666655555553211111223445555566
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC--CCCCC-
Q 015693 265 RLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARAAEAVAVAEIKALSYSDGLS--GVLSP- 341 (402)
Q Consensus 265 ql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAAKAsEa~ALaeikaLse~e~~~--~~~~~- 341 (402)
......-............+..+|..+-.-...|.-.+.|+.+ |. +..+. .+..|
T Consensus 109 ~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~---------------------LE-s~~s~~l~f~~PL 166 (326)
T PF04582_consen 109 DHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKA---------------------LE-SGSSSPLTFSAPL 166 (326)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HH-TTTTTT-EE-TTE
T ss_pred hhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHH---------------------Hh-cCCCCCceecCCe
Confidence 6666667777777778888888888887777788888877654 33 22222 13222
Q ss_pred -CCCCcceechHhhh
Q 015693 342 -KPEGVVTLTYEEYS 355 (402)
Q Consensus 342 -~~~~vITlS~eEY~ 355 (402)
-.+|+|.|....|+
T Consensus 167 ~~~~g~vSL~mdPyF 181 (326)
T PF04582_consen 167 KLDDGVVSLDMDPYF 181 (326)
T ss_dssp EECTTEEEE-B-TTT
T ss_pred EecCCEEEEecCCcc
Confidence 35688899888885
No 97
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=33.23 E-value=5.1e+02 Score=25.93 Aligned_cols=22 Identities=14% Similarity=0.225 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHH
Q 015693 175 ILMELKQAKLNLSRTTTDLADI 196 (402)
Q Consensus 175 ~~~EL~qaK~nL~ka~~El~~i 196 (402)
....|.+++++|..+...+...
T Consensus 84 ~~~~l~~a~a~l~~a~a~l~~~ 105 (346)
T PRK10476 84 YELTVAQAQADLALADAQIMTT 105 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777776665544443
No 98
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=32.80 E-value=5.9e+02 Score=26.52 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 015693 172 PGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERL 212 (402)
Q Consensus 172 ~~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~ 212 (402)
|.....-|.+|+++|..+...+..+++.+..++..+...+.
T Consensus 86 ~~~y~~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a 126 (352)
T COG1566 86 PRDYRAALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEA 126 (352)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578888888888888887777777777777766666555
No 99
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=32.73 E-value=5.4e+02 Score=26.11 Aligned_cols=72 Identities=17% Similarity=0.200 Sum_probs=53.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 015693 261 WELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARAAEAVAVAEIKALSYS 332 (402)
Q Consensus 261 ~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAAKAsEa~ALaeikaLse~ 332 (402)
..|+.+..+-++...+......+...+..+-++.-.........+.....+....++-=..+...+..|...
T Consensus 64 ~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 64 QELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666666666666666777777777777777777788888888888888888888888888888753
No 100
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=31.80 E-value=1.8e+02 Score=22.62 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=17.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015693 263 LQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKT 296 (402)
Q Consensus 263 Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka 296 (402)
|.+|+.+...+.........++.-++.++..++.
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~ 38 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKE 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555544444
No 101
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=31.72 E-value=5.3e+02 Score=25.67 Aligned_cols=117 Identities=26% Similarity=0.264 Sum_probs=88.1
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhhhhcCCCCC
Q 015693 58 HDMEEVDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLESKLVNENVAADLNSGNEN 137 (402)
Q Consensus 58 ~~~~~~el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~k~~~e~~a~~d~ela~~~~~~el~~~~~~ 137 (402)
|.++..|++-+.++ |+.-|+-+=..||+-+.++---|...+++|-||+-.+.+.
T Consensus 98 HDvEhiD~elvrkE---l~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~Ek----------------------- 151 (290)
T COG4026 98 HDVEHIDVELVRKE---LKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEK----------------------- 151 (290)
T ss_pred CCccccCHHHHHHH---HHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 55555666666655 5677777888889988999999999999999998543221
Q ss_pred CCcchhhhhhhhhhhhhccccccccCCCCCCCCchhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 138 MPPVLKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKT 217 (402)
Q Consensus 138 ~~~~~ke~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~l 217 (402)
. .++.+|+...++++-..+.+..|..--..|...+.+--....++
T Consensus 152 ------------------e-----------------eL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L 196 (290)
T COG4026 152 ------------------E-----------------ELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDL 196 (290)
T ss_pred ------------------H-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 1 36778888888888888888888888888888888777777788
Q ss_pred HHHhhhchhccccHHHHH
Q 015693 218 RERLSLNSSKVSSLEEEL 235 (402)
Q Consensus 218 REre~~as~~VsSLE~EL 235 (402)
+.+..-..-.|.+++.++
T Consensus 197 ~~r~~ELe~~~El~e~~~ 214 (290)
T COG4026 197 KKRWDELEPGVELPEEEL 214 (290)
T ss_pred HHHHHHhcccccchHHHH
Confidence 888777777777666554
No 102
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=31.57 E-value=4.9e+02 Score=26.51 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 193 LADIRASVESGNKKLEKERLSLEK 216 (402)
Q Consensus 193 l~~i~asvesLr~ELekeK~~Le~ 216 (402)
|......|+.|+.+|...+..|+.
T Consensus 10 L~et~~~V~~m~~~L~~~~~~L~~ 33 (344)
T PF12777_consen 10 LKETEEQVEEMQEELEEKQPELEE 33 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555554444443
No 103
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=31.31 E-value=8.3e+02 Score=28.03 Aligned_cols=40 Identities=23% Similarity=0.266 Sum_probs=22.3
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 180 KQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRE 219 (402)
Q Consensus 180 ~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lRE 219 (402)
+.|+.-+.....++..+-...+..+.+++..+..++..+.
T Consensus 505 ~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~ 544 (782)
T PRK00409 505 EEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLK 544 (782)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566655555555555555555555555555555554444
No 104
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.92 E-value=7.9e+02 Score=27.47 Aligned_cols=120 Identities=16% Similarity=0.173 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccCCC
Q 015693 174 LILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDD 253 (402)
Q Consensus 174 s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~ 253 (402)
+..+|++..|..++-...++..-.++.-.|+..+---++...+...++....+.+-+-+++...+-+.|-.++.......
T Consensus 335 ~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar 414 (654)
T KOG4809|consen 335 SFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDAR 414 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 34444444444444433333333334444444444444444555666666777777777777777777776654431111
Q ss_pred CccchhHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 015693 254 TNTMDISWELQRLSSEAEEFKKMGDAARSE---VLRAISEIEQT 294 (402)
Q Consensus 254 ~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E---~~k~k~E~Eqt 294 (402)
...++.-.++++..++-..+.+-..++.+ +..+..+.++-
T Consensus 415 -~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkevene 457 (654)
T KOG4809|consen 415 -MNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENE 457 (654)
T ss_pred -cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22233334555555555555544444444 33444445443
No 105
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=29.38 E-value=6.2e+02 Score=25.77 Aligned_cols=51 Identities=22% Similarity=0.132 Sum_probs=24.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 015693 264 QRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEA 314 (402)
Q Consensus 264 qql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EA 314 (402)
.....+.+..+......+.++..+...++.....+......|..+.+-.+-
T Consensus 214 ~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~ 264 (312)
T smart00787 214 KKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444455555555555555555555555555555544433
No 106
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=29.07 E-value=9.3e+02 Score=27.65 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=26.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 015693 63 VDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQ 108 (402)
Q Consensus 63 ~el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~ 108 (402)
-|+.|+++|+. -.|++|...+.-|+.+..-++.-+.-|.
T Consensus 265 ~EiqKL~qQL~-------qve~EK~~L~~~L~e~Q~qLe~a~~als 303 (717)
T PF09730_consen 265 SEIQKLKQQLL-------QVEREKSSLLSNLQESQKQLEHAQGALS 303 (717)
T ss_pred HHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777755 6688888888777666555555444444
No 107
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=28.82 E-value=5.5e+02 Score=26.53 Aligned_cols=56 Identities=21% Similarity=0.217 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhh
Q 015693 192 DLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKD 247 (402)
Q Consensus 192 El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka 247 (402)
--..|..-.++|-.+-.+....|..+|++-+.++..|++--..|+.+--+++.++.
T Consensus 267 REK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~Kq 322 (384)
T KOG0972|consen 267 REKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQ 322 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667777777888899999999999999999999999999999999864
No 108
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=28.81 E-value=7.9e+02 Score=28.18 Aligned_cols=39 Identities=23% Similarity=0.219 Sum_probs=18.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 180 KQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTR 218 (402)
Q Consensus 180 ~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lR 218 (402)
+.|+.-+..-..++..+-...+..+.+++..+..+++.+
T Consensus 500 ~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~ 538 (771)
T TIGR01069 500 EQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLL 538 (771)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445554444444444444444444444444444444433
No 109
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=28.80 E-value=8.8e+02 Score=27.84 Aligned_cols=44 Identities=25% Similarity=0.253 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhH
Q 015693 199 SVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKL 242 (402)
Q Consensus 199 svesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eL 242 (402)
.++.|-.+|+..+..++..+++.......+..+..+|..-+.++
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l 560 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKL 560 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433333333333333333333333333
No 110
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=28.63 E-value=4.2e+02 Score=24.62 Aligned_cols=107 Identities=18% Similarity=0.195 Sum_probs=0.0
Q ss_pred chhccccHHHHHHHHHHhHHHhhhhccCCCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 015693 224 NSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEM 303 (402)
Q Consensus 224 as~~VsSLE~EL~~tr~eLeaaka~E~~~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~ 303 (402)
....+++++..+...+.+|..+.-...........+...|+.+..+...-.......+.++..+...+..-...+.....
T Consensus 65 ~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k 144 (194)
T PF08614_consen 65 SSAQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNK 144 (194)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015693 304 RLVAARKMKEAARAAEAVAVAEIKALS 330 (402)
Q Consensus 304 RL~Aa~KE~EAAKAsEa~ALaeikaLs 330 (402)
-++....|+.+-...=-.+=..+..|.
T Consensus 145 ~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 145 ANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 111
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=27.61 E-value=7.7e+02 Score=28.51 Aligned_cols=15 Identities=40% Similarity=0.465 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHh
Q 015693 100 IEELKLKLQKEASEV 114 (402)
Q Consensus 100 ve~Lk~~l~k~~~e~ 114 (402)
|-||..-|++....|
T Consensus 511 IsEfv~~LekeVh~C 525 (769)
T PF05911_consen 511 ISEFVLVLEKEVHVC 525 (769)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 112
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=27.38 E-value=4.6e+02 Score=23.57 Aligned_cols=19 Identities=37% Similarity=0.539 Sum_probs=9.9
Q ss_pred ccccHHHHHHHHHHhHHHh
Q 015693 227 KVSSLEEELNQTRLKLQLA 245 (402)
Q Consensus 227 ~VsSLE~EL~~tr~eLeaa 245 (402)
.|+.|+.+|.++-..|..+
T Consensus 81 riq~LEeele~ae~~L~e~ 99 (143)
T PF12718_consen 81 RIQLLEEELEEAEKKLKET 99 (143)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3555555555555554443
No 113
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=26.86 E-value=1.8e+02 Score=26.35 Aligned_cols=67 Identities=19% Similarity=0.243 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhh
Q 015693 176 LMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKD 247 (402)
Q Consensus 176 ~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka 247 (402)
..+|.....+|...++++..+...+..|+.+|..-...+.. ......|..|+.++.....+|..++.
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~-----~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTN-----EELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666666666666666666666654443311 01234567777778778777777744
No 114
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=26.58 E-value=8.8e+02 Score=26.56 Aligned_cols=129 Identities=17% Similarity=0.216 Sum_probs=78.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhhhhcCCCCCCCcch
Q 015693 63 VDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLESKLVNENVAADLNSGNENMPPVL 142 (402)
Q Consensus 63 ~el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~k~~~e~~a~~d~ela~~~~~~el~~~~~~~~~~~ 142 (402)
.+++.++.+-.++...-+.-+..++.-|.=-|.|...++.++.+-+.-.... .|.+
T Consensus 25 k~i~~Le~~k~~l~~~pv~~el~kvk~l~l~Gqt~~~fe~w~~~w~~i~~~~------------------------~~~i 80 (560)
T PF06160_consen 25 KEIDELEERKNELMNLPVADELSKVKKLNLTGQTEEKFEEWRQKWDEIVTKQ------------------------LPEI 80 (560)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh------------------------hHHH
Confidence 4677888887777777777777777777766778888888777776432221 1222
Q ss_pred hhhhhhhhhhhhccccccccCCCCCCCCchhhHHHHHHHH--HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 143 KEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQA--KLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRER 220 (402)
Q Consensus 143 ke~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~~~EL~qa--K~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREr 220 (402)
. ..+-+.++. +-++-+++..+..+...++.+..++..-...|..+.+.
T Consensus 81 e------------------------------~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~ 130 (560)
T PF06160_consen 81 E------------------------------EQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLES 130 (560)
T ss_pred H------------------------------HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 122222222 44555555556666666666666666666666666666
Q ss_pred hhhchhccccHHHHHHHHHHhHHHh
Q 015693 221 LSLNSSKVSSLEEELNQTRLKLQLA 245 (402)
Q Consensus 221 e~~as~~VsSLE~EL~~tr~eLeaa 245 (402)
+..+...|..|.......|..+-+-
T Consensus 131 e~~nr~~i~~l~~~y~~lrk~ll~~ 155 (560)
T PF06160_consen 131 EEKNREEIEELKEKYRELRKELLAH 155 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666666665553
No 115
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=26.53 E-value=1e+03 Score=27.31 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=16.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015693 186 LSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLS 222 (402)
Q Consensus 186 L~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~ 222 (402)
|.+|..-+......++.|-.+|+..+..++..+++..
T Consensus 499 i~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~ 535 (771)
T TIGR01069 499 IEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLE 535 (771)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444445444444444444333
No 116
>PRK15396 murein lipoprotein; Provisional
Probab=26.48 E-value=2.5e+02 Score=23.06 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=16.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015693 263 LQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKT 296 (402)
Q Consensus 263 Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka 296 (402)
+.+|+++...++.....+...+.-++..+..++.
T Consensus 27 vd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~ 60 (78)
T PRK15396 27 IDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKD 60 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555444444444444443
No 117
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=26.38 E-value=9.3e+02 Score=28.80 Aligned_cols=124 Identities=17% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccCCCCc
Q 015693 176 LMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDDTN 255 (402)
Q Consensus 176 ~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~~~ 255 (402)
+++.+.-.+.-.+-+++.+.++.+++.++.++.+-.-+...+-.+-.-....+..+..+.......+-.. ...
T Consensus 233 ~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~-------~~k 305 (1072)
T KOG0979|consen 233 LLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEA-------LAK 305 (1072)
T ss_pred HHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHH-------HHH
Q ss_pred cchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 015693 256 TMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLV 306 (402)
Q Consensus 256 ~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~ 306 (402)
...+.-.+.....+.+..+...+..+....+....+++++-.|-.++.+|.
T Consensus 306 ~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~ 356 (1072)
T KOG0979|consen 306 VQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQ 356 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 118
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=26.29 E-value=8.3e+02 Score=27.60 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=19.8
Q ss_pred eccCCCcchHHHHHHhccCccccCCC
Q 015693 24 IDTSAPFESVKEAVSRFGGIGYWKPS 49 (402)
Q Consensus 24 iDt~apf~SVkeAV~~FGg~~~w~~~ 49 (402)
-|-++|=++|+-=...||-. .|.|.
T Consensus 295 tDVtp~P~~V~KiAasf~A~-ly~P~ 319 (652)
T COG2433 295 TDVTPAPETVKKIAASFNAV-LYTPD 319 (652)
T ss_pred ccCCCChHHHHHHHHHcCCc-ccCCc
Confidence 37788889999999999986 55554
No 119
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=25.36 E-value=9.8e+02 Score=26.71 Aligned_cols=52 Identities=23% Similarity=0.354 Sum_probs=19.9
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHH
Q 015693 185 NLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELN 236 (402)
Q Consensus 185 nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~ 236 (402)
+|......+..+...++.+..+++.-+..+..+.++..........|+.++.
T Consensus 329 el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 329 ELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444333333333333333333333444433
No 120
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=25.32 E-value=9.8e+02 Score=26.71 Aligned_cols=17 Identities=12% Similarity=0.436 Sum_probs=12.4
Q ss_pred CCcchHHHHHHhccCcc
Q 015693 28 APFESVKEAVSRFGGIG 44 (402)
Q Consensus 28 apf~SVkeAV~~FGg~~ 44 (402)
.+++..-+-+..|||.+
T Consensus 272 ~s~~dl~~~l~~~~~~~ 288 (594)
T PF05667_consen 272 SSSDDLADVLHKFSGEA 288 (594)
T ss_pred cchhHHHHHHHhccccc
Confidence 45667777788898764
No 121
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=25.14 E-value=7.6e+02 Score=25.36 Aligned_cols=48 Identities=27% Similarity=0.283 Sum_probs=33.3
Q ss_pred hhhhHHHHHHHHHHHHHHHhhh--------------hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 64 DIGNVEEQASLLEKDLILKERE--------------TLEVLKELEATKMIIEELKLKLQKEA 111 (402)
Q Consensus 64 el~k~~eq~~~~ek~l~~~e~~--------------~~~vl~eLe~tk~~ve~Lk~~l~k~~ 111 (402)
|++-|-.-+.+-++||..+-+- --..-..|..+...|..|+|.|...-
T Consensus 63 Didavt~lLeEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kd 124 (306)
T PF04849_consen 63 DIDAVTRLLEEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKD 124 (306)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666677777888776543 12244568888888888888887644
No 122
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=25.00 E-value=3.6e+02 Score=21.50 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=33.4
Q ss_pred hccccHHHHHHHHHHhHHHhhhhccCCCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015693 226 SKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTK 297 (402)
Q Consensus 226 ~~VsSLE~EL~~tr~eLeaaka~E~~~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~ 297 (402)
..|.+|+..|+++..++..-. ..+..|..|-+.+-.-...+..+..+++.|.+.-+-.
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~--------------~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHE--------------IENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667777777766666541 1133455555556666666666666666666555444
No 123
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=24.28 E-value=9.6e+02 Score=26.22 Aligned_cols=46 Identities=22% Similarity=0.135 Sum_probs=26.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 63 VDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKE 110 (402)
Q Consensus 63 ~el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~k~ 110 (402)
.++..+++++..+...+..-+.. .|-..+.....-|+.|--.|+++
T Consensus 256 ~~i~~l~~~i~~~~~~l~~l~l~--~~~~~~~~i~~~Id~Lyd~lekE 301 (569)
T PRK04778 256 KEIQDLKEQIDENLALLEELDLD--EAEEKNEEIQERIDQLYDILERE 301 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777766555444333222 23345566666677777777654
No 124
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=24.20 E-value=1.3e+03 Score=27.81 Aligned_cols=49 Identities=12% Similarity=0.283 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015693 174 LILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLS 222 (402)
Q Consensus 174 s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~ 222 (402)
.++=+|=-++..+.++++++....+.+.++...+.+.-..+...+.+.+
T Consensus 217 ~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ 265 (1141)
T KOG0018|consen 217 QFLWELFHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERG 265 (1141)
T ss_pred HHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHH
Confidence 4555666667788888888888888888888887777777666654443
No 125
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=24.04 E-value=8.6e+02 Score=25.58 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHh
Q 015693 202 SGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLA 245 (402)
Q Consensus 202 sLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaa 245 (402)
.|+.+|..-...+..++.+-+-..-.|..|+.++..++..+...
T Consensus 251 ~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~ 294 (498)
T TIGR03007 251 ELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEE 294 (498)
T ss_pred chHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhh
Confidence 45556666667777777777777778888888888888877654
No 126
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=23.64 E-value=5.1e+02 Score=22.83 Aligned_cols=69 Identities=20% Similarity=0.230 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHh
Q 015693 173 GLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLA 245 (402)
Q Consensus 173 ~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaa 245 (402)
..+-..|.+-..++...++++..+...=+.|+.||-+--. .-+........+..|+.++.....+...+
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~----~~e~~~~~~~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLME----ENEELRALKKEVEELEQELEELQQRYQTL 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566666666666666655555555554222 22333444555667777777666666554
No 127
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=23.61 E-value=3.2e+02 Score=21.46 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=35.4
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 015693 58 HDMEEVDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELK 104 (402)
Q Consensus 58 ~~~~~~el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk 104 (402)
+.++ .||.+++..--.++..|...|.-.-+...++..-+.-+++|+
T Consensus 14 Q~~~-eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 14 QAIQ-EELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445 488888888888888888888888888888777776666654
No 128
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=23.29 E-value=2.5e+02 Score=22.02 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHH
Q 015693 203 GNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQ 243 (402)
Q Consensus 203 Lr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLe 243 (402)
+..+|.+.|...-.+..++.-+......|..++...+.++.
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444334444444444444444433
No 129
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=21.84 E-value=3.4e+02 Score=27.61 Aligned_cols=66 Identities=24% Similarity=0.309 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhh
Q 015693 174 LILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAK 246 (402)
Q Consensus 174 s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaak 246 (402)
.+..++++-+.-|+.+..+ -.-|-.+|++-|.+|+++|++....-..=...=.|-+++--+|+.+-
T Consensus 116 ~i~~~~q~~~~~Lnnvasd-------ea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly 181 (338)
T KOG3647|consen 116 AIQVRLQSSRAQLNNVASD-------EAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLY 181 (338)
T ss_pred HHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 4445555555544444433 44566678888888888888777665555556666666666666653
No 130
>PF07453 NUMOD1: NUMOD1 domain; InterPro: IPR010896 This helix-turn-helix-containing DNA-binding domain is found associated in homing nucleases [].
Probab=21.71 E-value=49 Score=22.51 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=14.3
Q ss_pred CCcchHHHHHHhccCc
Q 015693 28 APFESVKEAVSRFGGI 43 (402)
Q Consensus 28 apf~SVkeAV~~FGg~ 43 (402)
.+|.|+++|..-||..
T Consensus 14 ~~F~Si~eAa~~l~i~ 29 (37)
T PF07453_consen 14 KSFDSIREAARYLGIS 29 (37)
T ss_pred EEEcCHHHHHHHhCCC
Confidence 7899999999999864
No 131
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=21.52 E-value=8.6e+02 Score=24.66 Aligned_cols=34 Identities=21% Similarity=0.149 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhhchhccccHHHHHHHHHHhHHHh
Q 015693 212 LSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLA 245 (402)
Q Consensus 212 ~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaa 245 (402)
.++..+.+++......+..|+.+......++..+
T Consensus 50 ~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~l 83 (314)
T PF04111_consen 50 EELEKLEQEEEELLQELEELEKEREELDQELEEL 83 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443
No 132
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=21.23 E-value=5.6e+02 Score=22.39 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 015693 193 LADIRASVESGNKKLEK 209 (402)
Q Consensus 193 l~~i~asvesLr~ELek 209 (402)
+.....-+..++.+|..
T Consensus 19 ~~~~~~~~~~~~~dl~~ 35 (132)
T PF07926_consen 19 EEDAEEQLQSLREDLES 35 (132)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 133
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=21.07 E-value=8.5e+02 Score=24.41 Aligned_cols=119 Identities=16% Similarity=0.204 Sum_probs=62.3
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHH-----------HHHHHHHHHHHHHHH-------HHHHHHhhhchhccccHHH
Q 015693 172 PGLILMELKQAKLNLSRTTTDLADIRAS-----------VESGNKKLEKERLSL-------EKTRERLSLNSSKVSSLEE 233 (402)
Q Consensus 172 ~~s~~~EL~qaK~nL~ka~~El~~i~as-----------vesLr~ELekeK~~L-------e~lREre~~as~~VsSLE~ 233 (402)
......+|.+.++.|.++..+|..+... +..|...|...|..- ..+++.+. .+|..
T Consensus 83 l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el------~~l~~ 156 (258)
T PF15397_consen 83 LSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMEL------ASLSR 156 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH
Confidence 4567788888888888888888888773 445666666555442 22222222 22222
Q ss_pred HHHHHHHhHHHhhhhccCCCCccc---hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015693 234 ELNQTRLKLQLAKDANGSDDTNTM---DISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTK 297 (402)
Q Consensus 234 EL~~tr~eLeaaka~E~~~~~~~~---~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~ 297 (402)
....-+.++-.. .+.......+. .....=+.+..+...+|...+...+++..+++++++-...
T Consensus 157 ~~q~k~~~il~~-~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~ 222 (258)
T PF15397_consen 157 KIQEKKEEILSS-AAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQ 222 (258)
T ss_pred HHHHHHHHHHHH-HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222222222221 11111110111 1122224566677777777777777777777776665443
No 134
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=20.43 E-value=1.4e+03 Score=26.57 Aligned_cols=31 Identities=23% Similarity=0.207 Sum_probs=16.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 81 LKERETLEVLKELEATKMIIEELKLKLQKEA 111 (402)
Q Consensus 81 ~~e~~~~~vl~eLe~tk~~ve~Lk~~l~k~~ 111 (402)
-+.......-.|+...+.-|.+|+-.+.+..
T Consensus 361 kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e 391 (775)
T PF10174_consen 361 KKQAQIEKLQEEKSRLQGEIEDLRDMLDKKE 391 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334455555666666666666666544
No 135
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=20.36 E-value=1.1e+03 Score=25.23 Aligned_cols=32 Identities=34% Similarity=0.453 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHhhcccc
Q 015693 302 EMRLVAARKMKEAARAAE-----AVAVAEIKALSYSD 333 (402)
Q Consensus 302 E~RL~Aa~KE~EAAKAsE-----a~ALaeikaLse~e 333 (402)
+.-|+|-=--||||||+| ++.-++++.|.+..
T Consensus 372 QTNLLALNAaIEAARAGE~GrGFAVVA~EVr~LA~~t 408 (553)
T PRK15048 372 QTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRS 408 (553)
T ss_pred HHHHHHHHHHHHHhccccCCCCChhHHHHHHHHHHHH
Confidence 456778888899999999 58888999998653
No 136
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=20.08 E-value=3.2e+02 Score=22.95 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=17.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 015693 260 SWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKI 298 (402)
Q Consensus 260 ~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i 298 (402)
...++.|+...+++...+..++..+..++.|+..+-..|
T Consensus 30 ss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~Ri 68 (85)
T PRK09973 30 ASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRL 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444444444444444444443333
Done!