Query 015693
Match_columns 402
No_of_seqs 150 out of 175
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 17:02:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015693.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015693hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 96.7 0.15 5E-06 48.3 18.7 139 175-318 9-147 (256)
2 3na7_A HP0958; flagellar bioge 95.6 1.2 4.1E-05 42.0 19.3 71 175-245 37-109 (256)
3 1c1g_A Tropomyosin; contractIl 94.0 3.1 0.00011 36.8 26.6 45 64-108 14-58 (284)
4 1i84_S Smooth muscle myosin he 93.1 0.22 7.6E-06 56.6 9.2 46 63-108 857-902 (1184)
5 3vkg_A Dynein heavy chain, cyt 90.5 6.1 0.00021 49.6 17.9 135 63-245 1934-2075(3245)
6 2efr_A General control protein 81.6 28 0.00095 30.9 14.8 113 210-329 26-138 (155)
7 3vkg_A Dynein heavy chain, cyt 78.8 1.5E+02 0.0052 37.6 22.7 23 89-111 1925-1947(3245)
8 3oja_B Anopheles plasmodium-re 78.8 28 0.00096 35.5 13.9 43 289-331 537-579 (597)
9 3mq7_A Bone marrow stromal ant 77.9 16 0.00054 31.1 9.5 40 174-213 29-68 (121)
10 3oja_B Anopheles plasmodium-re 77.0 33 0.0011 35.0 13.7 32 268-299 544-575 (597)
11 3ol1_A Vimentin; structural ge 68.3 52 0.0018 27.5 12.9 45 68-112 18-62 (119)
12 2eqb_B RAB guanine nucleotide 64.4 28 0.00094 28.7 7.8 30 270-299 64-93 (97)
13 2e7s_A RAB guanine nucleotide 63.3 17 0.0006 31.6 6.7 79 229-307 42-121 (135)
14 2dfs_A Myosin-5A; myosin-V, in 63.1 1.8E+02 0.0063 32.8 16.8 8 100-107 930-937 (1080)
15 1jcd_A Major outer membrane li 59.0 39 0.0013 24.7 7.0 43 263-305 6-48 (52)
16 3tnu_B Keratin, type II cytosk 52.3 50 0.0017 27.7 7.7 72 171-245 30-101 (129)
17 3i00_A HIP-I, huntingtin-inter 52.0 24 0.00082 29.9 5.6 18 200-217 17-34 (120)
18 3mq9_A Bone marrow stromal ant 49.5 1.6E+02 0.0056 29.0 12.3 69 172-241 371-440 (471)
19 3hnw_A Uncharacterized protein 46.5 59 0.002 28.0 7.4 54 191-244 68-121 (138)
20 3swk_A Vimentin; cytoskeleton, 45.5 1.1E+02 0.0038 24.1 10.3 38 74-111 4-41 (86)
21 3hrn_A Transient receptor pote 45.1 41 0.0014 25.7 5.3 29 349-381 3-31 (64)
22 1ic2_A Tropomyosin alpha chain 44.5 1.1E+02 0.0037 23.7 9.1 66 173-245 2-67 (81)
23 2ocy_A RAB guanine nucleotide 43.2 1.7E+02 0.0059 25.7 14.5 65 256-331 81-146 (154)
24 3hnw_A Uncharacterized protein 42.9 96 0.0033 26.6 8.1 44 192-235 90-133 (138)
25 3tnu_A Keratin, type I cytoske 42.1 65 0.0022 27.1 6.9 71 172-245 33-103 (131)
26 3u59_A Tropomyosin beta chain; 38.2 1.5E+02 0.0053 23.7 13.0 35 171-205 3-37 (101)
27 2e7s_A RAB guanine nucleotide 37.6 47 0.0016 28.8 5.2 78 227-315 2-79 (135)
28 4gif_A Polycystic kidney disea 37.5 75 0.0026 22.6 5.4 39 349-392 4-42 (45)
29 2dfs_A Myosin-5A; myosin-V, in 36.3 3.3E+02 0.011 30.8 13.3 26 220-245 978-1003(1080)
30 3ni0_A Bone marrow stromal ant 35.7 1.8E+02 0.0062 23.8 9.0 65 174-245 22-86 (99)
31 1jcd_A Major outer membrane li 35.6 1.2E+02 0.0041 22.1 6.4 41 258-298 8-48 (52)
32 1ic2_A Tropomyosin alpha chain 35.5 1.5E+02 0.0052 22.8 11.4 58 259-316 4-61 (81)
33 2eqb_B RAB guanine nucleotide 34.5 1.1E+02 0.0038 25.1 6.7 33 179-211 7-39 (97)
34 3u1c_A Tropomyosin alpha-1 cha 32.8 1.9E+02 0.0066 23.2 10.7 63 255-317 3-65 (101)
35 2fxo_A Myosin heavy chain, car 31.0 2.3E+02 0.0079 23.6 11.2 38 263-300 85-122 (129)
36 3tnu_B Keratin, type II cytosk 29.6 1.5E+02 0.0053 24.6 7.2 26 184-209 29-54 (129)
37 2ocy_A RAB guanine nucleotide 29.2 3E+02 0.01 24.2 10.6 80 224-314 11-90 (154)
38 3o0z_A RHO-associated protein 29.1 3.1E+02 0.011 24.5 14.8 116 196-332 11-126 (168)
39 2q6q_A Spindle POLE BODY compo 29.1 84 0.0029 24.3 4.8 53 185-237 11-63 (74)
40 3htk_A Structural maintenance 28.9 1.1E+02 0.0037 21.9 5.3 32 175-206 24-55 (60)
41 2v71_A Nuclear distribution pr 28.5 3.4E+02 0.011 24.6 17.0 98 175-285 15-112 (189)
42 4e61_A Protein BIM1; EB1-like 27.6 45 0.0015 27.8 3.3 46 170-219 4-50 (106)
43 2efr_A General control protein 27.2 3.2E+02 0.011 24.0 13.9 114 184-304 28-141 (155)
44 3te3_A Polycystic kidney disea 26.9 87 0.003 21.6 4.1 30 349-382 4-33 (39)
45 3zx6_A HAMP, methyl-accepting 24.4 4.6E+02 0.016 24.9 14.3 31 302-332 161-196 (341)
46 2f1m_A Acriflavine resistance 24.0 3.9E+02 0.013 24.0 9.5 23 290-312 99-121 (277)
47 3mq9_A Bone marrow stromal ant 22.7 2.8E+02 0.0096 27.3 8.8 67 174-243 401-467 (471)
48 4dk0_A Putative MACA; alpha-ha 22.6 1.8E+02 0.0062 27.4 7.1 75 172-246 65-149 (369)
49 3htk_A Structural maintenance 22.5 2.1E+02 0.0073 20.3 6.2 38 182-219 10-47 (60)
50 3fpp_A Macrolide-specific effl 22.4 2.3E+02 0.008 26.3 7.8 36 174-209 66-101 (341)
51 3u1c_A Tropomyosin alpha-1 cha 22.1 3.1E+02 0.01 22.0 13.3 66 172-244 4-69 (101)
52 3tnu_A Keratin, type I cytoske 21.8 2.5E+02 0.0085 23.4 7.0 26 184-209 31-56 (131)
53 3u59_A Tropomyosin beta chain; 21.4 3.1E+02 0.011 21.8 11.1 61 256-316 4-64 (101)
54 3s4r_A Vimentin; alpha-helix, 21.3 1.8E+02 0.0061 23.2 5.7 39 69-107 55-93 (93)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.65 E-value=0.15 Score=48.29 Aligned_cols=139 Identities=16% Similarity=0.171 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccCCCC
Q 015693 175 ILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDDT 254 (402)
Q Consensus 175 ~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~~ 254 (402)
.+.+|...-..|......+..+...+..|..++..-+..+..++.........+..++.++..++..+...+..-....
T Consensus 9 ~L~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~- 87 (256)
T 3na7_A 9 QLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK- 87 (256)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-
Confidence 3444444444444444444444444444444444444444444444444444444444444444444444322110000
Q ss_pred ccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 015693 255 NTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARAA 318 (402)
Q Consensus 255 ~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAAKAs 318 (402)
. +..++.+..|.+.++........++..++..++..+..+..++.++......+...++.
T Consensus 88 ~----~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~ 147 (256)
T 3na7_A 88 S----ERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESL 147 (256)
T ss_dssp S----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 22355566666777766666666666666666666666666655555555555444443
No 2
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.61 E-value=1.2 Score=41.95 Aligned_cols=71 Identities=11% Similarity=0.159 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch--hccccHHHHHHHHHHhHHHh
Q 015693 175 ILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNS--SKVSSLEEELNQTRLKLQLA 245 (402)
Q Consensus 175 ~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as--~~VsSLE~EL~~tr~eLeaa 245 (402)
+..++...+..+.....++..+...+..+..++...+.-+.+.+.+..... -....|.-|+...+.++..+
T Consensus 37 le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~l 109 (256)
T 3na7_A 37 ALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQA 109 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444555555555555554443221 12444555555544444443
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=93.97 E-value=3.1 Score=36.78 Aligned_cols=45 Identities=20% Similarity=0.164 Sum_probs=21.7
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 015693 64 DIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQ 108 (402)
Q Consensus 64 el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~ 108 (402)
+++.+..++..++.++...+..--..-.++...+.-+..+...+.
T Consensus 14 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (284)
T 1c1g_A 14 DKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELD 58 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544444444444444444444444444443
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=93.14 E-value=0.22 Score=56.58 Aligned_cols=46 Identities=17% Similarity=0.046 Sum_probs=23.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 015693 63 VDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQ 108 (402)
Q Consensus 63 ~el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~ 108 (402)
.++..+++++.+++..+...+...-.+-..+.....-+.+|..+|+
T Consensus 857 ~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~ 902 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ 902 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777766666655544333333333333344444444443
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.46 E-value=6.1 Score=49.62 Aligned_cols=135 Identities=10% Similarity=0.119 Sum_probs=74.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhhhhhhhhhHhhhhcCCC
Q 015693 63 VDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKL-------QKEASEVNATLESKLVNENVAADLNSGN 135 (402)
Q Consensus 63 ~el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l-------~k~~~e~~a~~d~ela~~~~~~el~~~~ 135 (402)
..+.+++.++...+..|..|..++-+.|.++...+..++.-|... ++.+.+.++.++
T Consensus 1934 ~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~---------------- 1997 (3245)
T 3vkg_A 1934 AQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKV---------------- 1997 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 456777888888888888888888788887776655555444333 332222222211
Q ss_pred CCCCcchhhhhhhhhhhhhccccccccCCCCCCCCchhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 136 ENMPPVLKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLE 215 (402)
Q Consensus 136 ~~~~~~~ke~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le 215 (402)
.|. .+....+++ .-.+.+|.++..+|..++..|..++..+..|..+|.+-+...+
T Consensus 1998 ------------~~e----~dL~~A~Pa---------~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~ 2052 (3245)
T 3vkg_A 1998 ------------KAY----ADLEKAEPT---------GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYA 2052 (3245)
T ss_dssp ------------HHH----HCC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHH----HHHhhcCCC---------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 111111111 2256677777777777777766666666655555555444444
Q ss_pred HHHHHhhhchhccccHHHHHHHHHHhHHHh
Q 015693 216 KTRERLSLNSSKVSSLEEELNQTRLKLQLA 245 (402)
Q Consensus 216 ~lREre~~as~~VsSLE~EL~~tr~eLeaa 245 (402)
.. ......|+.+++.+..+|..+
T Consensus 2053 ~~-------~~ek~~L~~e~~~~~~kl~rA 2075 (3245)
T 3vkg_A 2053 TL-------IRETEQIKTESSKVKNKVDRS 2075 (3245)
T ss_dssp HH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 33 223345666666666666665
No 6
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=81.62 E-value=28 Score=30.85 Aligned_cols=113 Identities=19% Similarity=0.217 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccCCCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 210 ERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAIS 289 (402)
Q Consensus 210 eK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~ 289 (402)
.-..|++..++...+...|..|+.+|..+-..|..+...+..........-..|..|+.....|..-++.+-..+.++-.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999999999999999999999988888855443221122344566778888888888888888888888888
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015693 290 EIEQTKTKIKTAEMRLVAARKMKEAARAAEAVAVAEIKAL 329 (402)
Q Consensus 290 E~Eqtka~i~TaE~RL~Aa~KE~EAAKAsEa~ALaeikaL 329 (402)
+++...-.+.....+......++. -+|.+|..+
T Consensus 106 ~id~lEd~L~~~Kek~~~i~~eLd-------~tl~el~~~ 138 (155)
T 2efr_A 106 SIDDLEDELYAQKLKYKAISEEMK-------QLEDKVEEL 138 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhc
Confidence 888877777777777777777776 345555544
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=78.81 E-value=1.5e+02 Score=37.65 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 015693 89 VLKELEATKMIIEELKLKLQKEA 111 (402)
Q Consensus 89 vl~eLe~tk~~ve~Lk~~l~k~~ 111 (402)
-|.=|..|...|++|+.+|...+
T Consensus 1925 GL~KL~et~~~V~~l~~~L~~~~ 1947 (3245)
T 3vkg_A 1925 GLKKLRDTEAQVKDLQVSLAQKN 1947 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678888999999998887655
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.78 E-value=28 Score=35.52 Aligned_cols=43 Identities=19% Similarity=0.192 Sum_probs=19.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015693 289 SEIEQTKTKIKTAEMRLVAARKMKEAARAAEAVAVAEIKALSY 331 (402)
Q Consensus 289 ~E~Eqtka~i~TaE~RL~Aa~KE~EAAKAsEa~ALaeikaLse 331 (402)
.+++.-+..+...+.++...++.+...+.-=...-.+|+.|.+
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444443333333334567777765
No 9
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=77.92 E-value=16 Score=31.11 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 015693 174 LILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLS 213 (402)
Q Consensus 174 s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~ 213 (402)
.+..+|.++.-.|-.+......-...|..|+.-|+++++-
T Consensus 29 lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq 68 (121)
T 3mq7_A 29 LLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ 68 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999999999999999999999998886
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=76.99 E-value=33 Score=35.02 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 015693 268 SEAEEFKKMGDAARSEVLRAISEIEQTKTKIK 299 (402)
Q Consensus 268 ~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~ 299 (402)
.+.+..++..+..+..+..+++|....+..+.
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~ 575 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVK 575 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 33333334344444444444444444433333
No 11
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=68.31 E-value=52 Score=27.49 Aligned_cols=45 Identities=24% Similarity=0.165 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 68 VEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEAS 112 (402)
Q Consensus 68 ~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~k~~~ 112 (402)
.+..+..|.+.+.....++..+.-++..++..++++|.|.+.+..
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~ 62 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEML 62 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 344555555556688889999999999999999999999987553
No 12
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=64.45 E-value=28 Score=28.69 Aligned_cols=30 Identities=17% Similarity=0.110 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 015693 270 AEEFKKMGDAARSEVLRAISEIEQTKTKIK 299 (402)
Q Consensus 270 aE~aK~~ae~ak~E~~k~k~E~Eqtka~i~ 299 (402)
.++|+.|+-.++.+...+..-.++-+..+.
T Consensus 64 FeEAN~MVa~ar~e~~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 64 FDEANNMVADARKEKYAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466777777776655555444444444433
No 13
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=63.32 E-value=17 Score=31.56 Aligned_cols=79 Identities=14% Similarity=0.190 Sum_probs=47.0
Q ss_pred ccHHHHHHHHHHhHHHhhhhccCCCCccchhHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 015693 229 SSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSE-AEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVA 307 (402)
Q Consensus 229 sSLE~EL~~tr~eLeaaka~E~~~~~~~~~i~~~Lqql~~E-aE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~A 307 (402)
+....++.+....+..-+......+.....|...|..|+.. .++|+.|+-.++.+...+..-.++-+..+...+.+|..
T Consensus 42 ~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~ 121 (135)
T 2e7s_A 42 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDT 121 (135)
T ss_dssp TTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC--
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554443221111111334666677777655 68888888888888777777777777777776666544
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=63.05 E-value=1.8e+02 Score=32.81 Aligned_cols=8 Identities=38% Similarity=0.542 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q 015693 100 IEELKLKL 107 (402)
Q Consensus 100 ve~Lk~~l 107 (402)
|.+|..+|
T Consensus 930 l~eLq~rL 937 (1080)
T 2dfs_A 930 IMQLQRKI 937 (1080)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 33444444
No 15
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=59.03 E-value=39 Score=24.69 Aligned_cols=43 Identities=23% Similarity=0.230 Sum_probs=20.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 015693 263 LQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRL 305 (402)
Q Consensus 263 Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL 305 (402)
|++|+.+...+..........+..++.++..++....-+-.||
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444445555555555554444444443
No 16
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=52.30 E-value=50 Score=27.74 Aligned_cols=72 Identities=13% Similarity=0.147 Sum_probs=40.3
Q ss_pred chhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHh
Q 015693 171 VPGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLA 245 (402)
Q Consensus 171 ~~~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaa 245 (402)
.+...+.|+.+.+-.|..-..++..++.--.+|...|........ .........|..|+.+|.++|.+++..
T Consensus 30 ~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~---~~l~~~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 30 DLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGE---LALKDARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345566677776666666666666665555555554443222211 122334456788888888888877654
No 17
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=51.98 E-value=24 Score=29.93 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015693 200 VESGNKKLEKERLSLEKT 217 (402)
Q Consensus 200 vesLr~ELekeK~~Le~l 217 (402)
++.|+.+++..+..|+.+
T Consensus 17 Ie~Lkreie~lk~ele~l 34 (120)
T 3i00_A 17 IERLYREISGLKAQLENM 34 (120)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555544444444
No 18
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=49.52 E-value=1.6e+02 Score=29.03 Aligned_cols=69 Identities=9% Similarity=0.106 Sum_probs=46.9
Q ss_pred hhhHHHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHh
Q 015693 172 PGLILMELKQA-KLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLK 241 (402)
Q Consensus 172 ~~s~~~EL~qa-K~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~e 241 (402)
|..++.++.+. ..-|.+.+.+. ..+....-|+.+|.+.+..+..++.+......+|-.|..-|+.-.+.
T Consensus 371 ~eeal~~~~~~i~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (471)
T 3mq9_A 371 VDEALKDAQTRITAARDGLRAVM-EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ 440 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH-HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHH
Confidence 55555444322 44444443333 55667788899999999999999888888888888777777666555
No 19
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=46.52 E-value=59 Score=27.97 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHH
Q 015693 191 TDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQL 244 (402)
Q Consensus 191 ~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLea 244 (402)
+|+..++...+.|..+++.-..++..++.+........-+++.++...+.++..
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~ 121 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINK 121 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555556666555555555555554444444444444444444333333
No 20
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=45.47 E-value=1.1e+02 Score=24.12 Aligned_cols=38 Identities=24% Similarity=0.153 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 74 LLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEA 111 (402)
Q Consensus 74 ~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~k~~ 111 (402)
+|...+...-.++..+.-|+..++..++++|.|.+-+.
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~ 41 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 41 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444457778889999999999999999999998654
No 21
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=45.12 E-value=41 Score=25.65 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=22.8
Q ss_pred echHhhhhhhhhHHHHHHhhHhHHHHHHHhHHH
Q 015693 349 LTYEEYSSLTCKAQDAEELSKKRVVDAVIQVDE 381 (402)
Q Consensus 349 lS~eEY~~Ls~kA~eaEE~A~kKVaaA~aqVea 381 (402)
.|.+||+-|++|+..-|-. |...+.+||+
T Consensus 3 VS~EEF~~L~rRVlqLE~s----l~gI~SqIDa 31 (64)
T 3hrn_A 3 VSYEEFQVLVRRVDRMEHS----IGSIVSKIDA 31 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 4889999999999888764 3456677775
No 22
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=44.52 E-value=1.1e+02 Score=23.67 Aligned_cols=66 Identities=17% Similarity=0.198 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHh
Q 015693 173 GLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLA 245 (402)
Q Consensus 173 ~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaa 245 (402)
+.|++-+...+...+.+.+.+.....-+...+....+.- +......-.++.|+.+|+++...|..+
T Consensus 2 ~~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E-------~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 2 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLE-------DELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777666555554444444443333 333334445667777777777666665
No 23
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=43.23 E-value=1.7e+02 Score=25.73 Aligned_cols=65 Identities=14% Similarity=0.147 Sum_probs=43.2
Q ss_pred cchhHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015693 256 TMDISWELQRLSSE-AEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARAAEAVAVAEIKALSY 331 (402)
Q Consensus 256 ~~~i~~~Lqql~~E-aE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAAKAsEa~ALaeikaLse 331 (402)
...|...|..|+.. .++|+.|+-.++.+...+..-.++-+..+...+.+|.. =...|..+|.+..
T Consensus 81 ~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~-----------lq~ql~~LK~v~~ 146 (154)
T 2ocy_A 81 ADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDT-----------LTLQLKNLKKVMH 146 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 34566667666655 68888888888877777766666666666666666644 3445666666654
No 24
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=42.91 E-value=96 Score=26.65 Aligned_cols=44 Identities=16% Similarity=0.315 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHH
Q 015693 192 DLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEEL 235 (402)
Q Consensus 192 El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL 235 (402)
++..++--..+++.+++..+..++.++++.....-.+..|+.+|
T Consensus 90 E~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 90 EIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444
No 25
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=42.13 E-value=65 Score=27.13 Aligned_cols=71 Identities=17% Similarity=0.140 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHh
Q 015693 172 PGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLA 245 (402)
Q Consensus 172 ~~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaa 245 (402)
+...+.|+.+.+-.|..-..++..++.--.+|...|....... ..........|..|+.+|.++|.+++..
T Consensus 33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~---~~~l~~~q~~i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 33 VQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRY---CMQLAQIQEMIGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666555555555555554444444444333322211 1122234455777888888888776654
No 26
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=38.21 E-value=1.5e+02 Score=23.68 Aligned_cols=35 Identities=11% Similarity=0.095 Sum_probs=19.7
Q ss_pred chhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 015693 171 VPGLILMELKQAKLNLSRTTTDLADIRASVESGNK 205 (402)
Q Consensus 171 ~~~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ 205 (402)
+++.|++.+...|...+.+.+.+..+..-+..+..
T Consensus 3 ~md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~ 37 (101)
T 3u59_A 3 SMEAIKKKMQMLKLDKENAIDRAEQAEADKKQAED 37 (101)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666655554444433333
No 27
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.58 E-value=47 Score=28.83 Aligned_cols=78 Identities=23% Similarity=0.186 Sum_probs=45.8
Q ss_pred ccccHHHHHHHHHHhHHHhhhhccCCCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 015693 227 KVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLV 306 (402)
Q Consensus 227 ~VsSLE~EL~~tr~eLeaaka~E~~~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~ 306 (402)
.+|+|+..|..++..|...+... ..+..+..+...+.........|..++...+...+..-.++|....
T Consensus 2 ~~s~LEd~L~~~r~~l~~~~~~~-----------~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~ 70 (135)
T 2e7s_A 2 PLGSLEEQLNKSLKTIASQKAAI-----------ENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEAD 70 (135)
T ss_dssp ----CCSTTTHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTH
T ss_pred CcchHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888875442 1233344444444444445566666666766666666666666666
Q ss_pred HHHHHHHHH
Q 015693 307 AARKMKEAA 315 (402)
Q Consensus 307 Aa~KE~EAA 315 (402)
..-.|+|.=
T Consensus 71 ~ie~ElE~L 79 (135)
T 2e7s_A 71 KLNKEVEDL 79 (135)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
No 28
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=37.48 E-value=75 Score=22.62 Aligned_cols=39 Identities=28% Similarity=0.408 Sum_probs=28.8
Q ss_pred echHhhhhhhhhHHHHHHhhHhHHHHHHHhHHHHhhhHHHHHHH
Q 015693 349 LTYEEYSSLTCKAQDAEELSKKRVVDAVIQVDEANVSKMEILKK 392 (402)
Q Consensus 349 lS~eEY~~Ls~kA~eaEE~A~kKVaaA~aqVeaak~Se~e~L~K 392 (402)
.|.+||+-|++|+..-|-. |...+.+||++ .++.++++|
T Consensus 4 Vs~eeF~~L~rRVlqlE~~----l~gI~S~idav-~~Kl~~~Er 42 (45)
T 4gif_A 4 VSGEEFYMLTRRVLQLETV----LEGVVSQIDAV-GSKLKMLER 42 (45)
T ss_dssp CCHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-HTHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-HHHHHHHHh
Confidence 5899999999999888764 45677788853 455555554
No 29
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=36.34 E-value=3.3e+02 Score=30.78 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=15.2
Q ss_pred HhhhchhccccHHHHHHHHHHhHHHh
Q 015693 220 RLSLNSSKVSSLEEELNQTRLKLQLA 245 (402)
Q Consensus 220 re~~as~~VsSLE~EL~~tr~eLeaa 245 (402)
+.......|.+|+.++...+.+++.+
T Consensus 978 e~~~~~~~v~~L~~e~~~l~~~~~~~ 1003 (1080)
T 2dfs_A 978 EAKNATNRVLSLQEEIAKLRKELHQT 1003 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455666666666666666655
No 30
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=35.70 E-value=1.8e+02 Score=23.80 Aligned_cols=65 Identities=18% Similarity=0.233 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHh
Q 015693 174 LILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLA 245 (402)
Q Consensus 174 s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaa 245 (402)
.+..+|.+|--.|-.+....+.-.-.|..|+.-|+++|+--.+-.. .|.-|+.|+.....+|+.+
T Consensus 22 lLq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~-------~v~elqgEI~~Lnq~Lqda 86 (99)
T 3ni0_A 22 LLQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQA-------RIKELENEVTKLNQELENL 86 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999886433322 2566677776666666665
No 31
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=35.59 E-value=1.2e+02 Score=22.05 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=25.4
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 015693 258 DISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKI 298 (402)
Q Consensus 258 ~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i 298 (402)
.|...+++|+....++......++.++.-++.|+.-+-..|
T Consensus 8 ~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 8 QASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555666666666666666666666666666666554444
No 32
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=35.49 E-value=1.5e+02 Score=22.79 Aligned_cols=58 Identities=14% Similarity=0.124 Sum_probs=34.9
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 015693 259 ISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAAR 316 (402)
Q Consensus 259 i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAAK 316 (402)
|-..|+.|..+.+.+.-.++.+...+..+.....+....|.....|+....-+++.+.
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~e 61 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYS 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666666666666666666665555443
No 33
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.46 E-value=1.1e+02 Score=25.08 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=14.5
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 015693 179 LKQAKLNLSRTTTDLADIRASVESGNKKLEKER 211 (402)
Q Consensus 179 L~qaK~nL~ka~~El~~i~asvesLr~ELekeK 211 (402)
|+.++..|.....++..+......|+.+|.+++
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~ 39 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKEN 39 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444433
No 34
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=32.81 E-value=1.9e+02 Score=23.23 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=52.1
Q ss_pred ccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 015693 255 NTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARA 317 (402)
Q Consensus 255 ~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAAKA 317 (402)
.+..|-..|+.|..+++.+.-.++.+...+..+.....+....|.....|+....-+++.+..
T Consensus 3 ~MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee 65 (101)
T 3u1c_A 3 HMDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLE 65 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666778888999999999999998888888888888888888888898888888886543
No 35
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=30.96 E-value=2.3e+02 Score=23.58 Aligned_cols=38 Identities=13% Similarity=0.206 Sum_probs=15.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 015693 263 LQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKT 300 (402)
Q Consensus 263 Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~T 300 (402)
|..+....++..........+-.++..++..-+-.|..
T Consensus 85 l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 85 VKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444433
No 36
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=29.59 E-value=1.5e+02 Score=24.63 Aligned_cols=26 Identities=8% Similarity=0.288 Sum_probs=15.0
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHH
Q 015693 184 LNLSRTTTDLADIRASVESGNKKLEK 209 (402)
Q Consensus 184 ~nL~ka~~El~~i~asvesLr~ELek 209 (402)
..|..++.++..++..+.+|+.+|.-
T Consensus 29 ~~l~~~k~Ei~elrr~iq~L~~el~~ 54 (129)
T 3tnu_B 29 DDLRNTKHEISEMNRMIQRLRAEIDN 54 (129)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677777777777777777654
No 37
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.16 E-value=3e+02 Score=24.23 Aligned_cols=80 Identities=24% Similarity=0.202 Sum_probs=43.8
Q ss_pred chhccccHHHHHHHHHHhHHHhhhhccCCCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 015693 224 NSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEM 303 (402)
Q Consensus 224 as~~VsSLE~EL~~tr~eLeaaka~E~~~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~ 303 (402)
+....+.|+.+|..+|.+|...+.+-.. +..+..+...+.........|..++...+...+..-..+|.
T Consensus 11 Ain~qs~LeD~L~~~R~el~~~~~ri~~-----------lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~ 79 (154)
T 2ocy_A 11 SVDKQSHLEEQLNKSLKTIASQKAAIEN-----------YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEE 79 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------THHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678999999999998877543211 11222223333333333455555555555555555555555
Q ss_pred HHHHHHHHHHH
Q 015693 304 RLVAARKMKEA 314 (402)
Q Consensus 304 RL~Aa~KE~EA 314 (402)
.+...-.|+|.
T Consensus 80 ~~~~ie~ElEe 90 (154)
T 2ocy_A 80 EADKLNKEVED 90 (154)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 38
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=29.12 E-value=3.1e+02 Score=24.47 Aligned_cols=116 Identities=12% Similarity=0.066 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccCCCCccchhHHHHHHhHHHHHHHHH
Q 015693 196 IRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKK 275 (402)
Q Consensus 196 i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~~~~~~i~~~Lqql~~EaE~aK~ 275 (402)
+.--++-++..|.-+...-+++|....-.+..+++++.-+...+-.+..+.. ....+.+
T Consensus 11 LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~---------------------~k~~Lek 69 (168)
T 3o0z_A 11 LQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILEN---------------------SKSQTDK 69 (168)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHH
Confidence 3334455566666666667777777766666666666655544444433311 1111112
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 015693 276 MGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARAAEAVAVAEIKALSYS 332 (402)
Q Consensus 276 ~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAAKAsEa~ALaeikaLse~ 332 (402)
..-..+..+..=+..--+..-.+...+.|+....-+++-.|..+..+..+.+.|++.
T Consensus 70 e~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ek 126 (168)
T 3o0z_A 70 DYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDM 126 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222233334445577788899999999999999999999999999974
No 39
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=29.08 E-value=84 Score=24.33 Aligned_cols=53 Identities=23% Similarity=0.241 Sum_probs=36.2
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHH
Q 015693 185 NLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQ 237 (402)
Q Consensus 185 nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~ 237 (402)
.|..-.+|+..+..-+.+||.+|.|=..---++..+..-....++.|+-.++.
T Consensus 11 kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~d 63 (74)
T 2q6q_A 11 KLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLSD 63 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhccc
Confidence 34455568888999999999999986665556655555555556666555543
No 40
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=28.93 E-value=1.1e+02 Score=21.94 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 015693 175 ILMELKQAKLNLSRTTTDLADIRASVESGNKK 206 (402)
Q Consensus 175 ~~~EL~qaK~nL~ka~~El~~i~asvesLr~E 206 (402)
...++..++.++.+.+.++..++.++..++..
T Consensus 24 ~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 24 KTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555444444443
No 41
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=28.46 E-value=3.4e+02 Score=24.63 Aligned_cols=98 Identities=12% Similarity=0.093 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccCCCC
Q 015693 175 ILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDDT 254 (402)
Q Consensus 175 ~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~~ 254 (402)
.+..+.+.+..+.-+..++..|+.+.--|-.+|++ .|..+..+.......+..|..|+...|.++...+.
T Consensus 15 wk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~---eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~------- 84 (189)
T 2v71_A 15 WKELSMKYKQSFQEARDELVEFQEGSRELEAELEA---QLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYA------- 84 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 44455667778888888999999999999999987 45555555555556666666666666666655421
Q ss_pred ccchhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 015693 255 NTMDISWELQRLSSEAEEFKKMGDAARSEVL 285 (402)
Q Consensus 255 ~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~ 285 (402)
+....+..|..++..++......+.-++
T Consensus 85 ---e~~~~~~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 85 ---QSYKQVSVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122344455555555555554444443
No 42
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=27.65 E-value=45 Score=27.84 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=33.5
Q ss_pred CchhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 015693 170 SVPGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLS-LEKTRE 219 (402)
Q Consensus 170 ~~~~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~-Le~lRE 219 (402)
+|+.++..||.+.+..+...+.++..++..++.| +++|.+ ..++|.
T Consensus 4 ~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~l----EkERDFYF~KLRd 50 (106)
T 4e61_A 4 GSLVAIQAELTKSQETIGSLNEEIEQYKGTVSTL----EIEREFYFNKLRD 50 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 4567788899998888888888888888877774 455555 335554
No 43
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=27.15 E-value=3.2e+02 Score=23.96 Aligned_cols=114 Identities=15% Similarity=0.107 Sum_probs=62.0
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccCCCCccchhHHHH
Q 015693 184 LNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWEL 263 (402)
Q Consensus 184 ~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~~~~~~i~~~L 263 (402)
..|.++-+-+...-+-+..|-.+|.-.-..|-.+.-....++-....++.++......|..+-. |.+ .--..+
T Consensus 28 ~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~---RAE----~AERsv 100 (155)
T 2efr_A 28 KLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAET---RAE----FAERSV 100 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HHHHHH
Confidence 3344444433333344444555555444455555555555555555666666666666555521 111 112345
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 015693 264 QRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMR 304 (402)
Q Consensus 264 qql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~R 304 (402)
.+|..+.+++.-.....+.....+..++++|=..+..+...
T Consensus 101 ~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~ 141 (155)
T 2efr_A 101 TKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSK 141 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666777777667777777777777777776666655433
No 44
>3te3_A Polycystic kidney disease 2-like 1 protein; trimeric coiled-coil, oligomerization domain, C-terminal CYT regulatory domain, metal transport; 2.69A {Homo sapiens}
Probab=26.92 E-value=87 Score=21.63 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=22.9
Q ss_pred echHhhhhhhhhHHHHHHhhHhHHHHHHHhHHHH
Q 015693 349 LTYEEYSSLTCKAQDAEELSKKRVVDAVIQVDEA 382 (402)
Q Consensus 349 lS~eEY~~Ls~kA~eaEE~A~kKVaaA~aqVeaa 382 (402)
.|.+||+-|++|+..-|-. +...+.|||++
T Consensus 4 Vs~eeF~~L~rRVlqlE~~----l~gI~S~idav 33 (39)
T 3te3_A 4 VSGEEFYMLTRRVLQLETV----LEGVVSQIDAV 33 (39)
T ss_dssp CCHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 5899999999999888764 34566677653
No 45
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=24.40 E-value=4.6e+02 Score=24.91 Aligned_cols=31 Identities=35% Similarity=0.464 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHhhccc
Q 015693 302 EMRLVAARKMKEAARAAE-----AVAVAEIKALSYS 332 (402)
Q Consensus 302 E~RL~Aa~KE~EAAKAsE-----a~ALaeikaLse~ 332 (402)
+.-|+|-=--||||||.| ++.-.+++.|.+.
T Consensus 161 QTNLLALNAaIEAARAGE~GrGFAVVAdEVRkLAe~ 196 (341)
T 3zx6_A 161 QTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQR 196 (341)
T ss_dssp HHHHHHHHHHHHHTTSTTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHH
Confidence 567888888899999998 5777888888864
No 46
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=24.05 E-value=3.9e+02 Score=23.98 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=10.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHH
Q 015693 290 EIEQTKTKIKTAEMRLVAARKMK 312 (402)
Q Consensus 290 E~Eqtka~i~TaE~RL~Aa~KE~ 312 (402)
++++++..+..++.+|.++...+
T Consensus 99 ~~~~a~~~~~~a~a~l~~a~a~l 121 (277)
T 2f1m_A 99 EYDQALADAQQANAAVTAAKAAV 121 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 47
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=22.70 E-value=2.8e+02 Score=27.26 Aligned_cols=67 Identities=16% Similarity=0.255 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHH
Q 015693 174 LILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQ 243 (402)
Q Consensus 174 s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLe 243 (402)
.+...|.+++.|+..+....+.-.-.|-.|+.-|++.++--++ +.......|.-|+.+|...+.++.
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 401 LLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQK---KVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888999999998888888888889999999887765221 122222334445555554444443
No 48
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=22.60 E-value=1.8e+02 Score=27.43 Aligned_cols=75 Identities=12% Similarity=0.224 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhhchhccccHHHHHHHHHHh
Q 015693 172 PGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERL----------SLEKTRERLSLNSSKVSSLEEELNQTRLK 241 (402)
Q Consensus 172 ~~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~----------~Le~lREre~~as~~VsSLE~EL~~tr~e 241 (402)
+......|.+++++|..+...+...++..+..+.++++.+. .+...+.....+...+.+++..|.+.+..
T Consensus 65 ~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~ 144 (369)
T 4dk0_A 65 STTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIE 144 (369)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhh
Q 015693 242 LQLAK 246 (402)
Q Consensus 242 Leaak 246 (402)
+..++
T Consensus 145 l~~a~ 149 (369)
T 4dk0_A 145 VNTAE 149 (369)
T ss_dssp HHHHH
T ss_pred HHHHH
No 49
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=22.47 E-value=2.1e+02 Score=20.30 Aligned_cols=38 Identities=11% Similarity=0.056 Sum_probs=16.9
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693 182 AKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRE 219 (402)
Q Consensus 182 aK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lRE 219 (402)
....+....+....+...+..+...+.+....|..+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~ 47 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRD 47 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444443
No 50
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=22.38 E-value=2.3e+02 Score=26.35 Aligned_cols=36 Identities=8% Similarity=0.088 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 015693 174 LILMELKQAKLNLSRTTTDLADIRASVESGNKKLEK 209 (402)
Q Consensus 174 s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELek 209 (402)
.+...|.+++++|..+...+...++..+..+.++++
T Consensus 66 ~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r 101 (341)
T 3fpp_A 66 QAENQIKEVEATLMELRAQRQQAEAELKLARVTYSR 101 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666555555444444444444433
No 51
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=22.13 E-value=3.1e+02 Score=22.00 Aligned_cols=66 Identities=11% Similarity=0.098 Sum_probs=33.6
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHH
Q 015693 172 PGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQL 244 (402)
Q Consensus 172 ~~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLea 244 (402)
++.|++.+...|...+.+.+.+......+..+.....+.-..+.. ..-.++.|+.+|+++...|..
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~s-------L~kk~~~lE~eld~~ee~L~e 69 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQ-------LEKQLRVTEDSRDQVLEELHK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777777776666555554444443333332222222 233344555555555444443
No 52
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.83 E-value=2.5e+02 Score=23.43 Aligned_cols=26 Identities=8% Similarity=0.256 Sum_probs=10.3
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHH
Q 015693 184 LNLSRTTTDLADIRASVESGNKKLEK 209 (402)
Q Consensus 184 ~nL~ka~~El~~i~asvesLr~ELek 209 (402)
..|..++.++..++..+.+|+.+|..
T Consensus 31 ~~l~~~k~Ei~elrr~iq~L~~el~~ 56 (131)
T 3tnu_A 31 ELVQSGKSEISELRRTMQNLEIELQS 56 (131)
T ss_dssp ----------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666653
No 53
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=21.42 E-value=3.1e+02 Score=21.81 Aligned_cols=61 Identities=15% Similarity=0.108 Sum_probs=46.7
Q ss_pred cchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 015693 256 TMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAAR 316 (402)
Q Consensus 256 ~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAAK 316 (402)
+..|-..|+-|..+++.+--.++.+...+..+.....+....|.....++.....+++.+.
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~ 64 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYS 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677788888888888888888888888878888888888888888877777776543
No 54
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=21.28 E-value=1.8e+02 Score=23.24 Aligned_cols=39 Identities=23% Similarity=0.159 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 015693 69 EEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKL 107 (402)
Q Consensus 69 ~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l 107 (402)
+..+..|.+.+...-.++..+..|+......++++|.+|
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 334444444444555556666666666666666666553
Done!