BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015694
(402 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UJM|A Chain A, Crystal Structure Of The Ntf2-Like Domain Of The
Drosophila Melanogaster Rasputin Protein
pdb|3UJM|B Chain B, Crystal Structure Of The Ntf2-Like Domain Of The
Drosophila Melanogaster Rasputin Protein
Length = 120
Score = 90.5 bits (223), Expect = 1e-18, Method: Composition-based stats.
Identities = 50/123 (40%), Positives = 71/123 (57%), Gaps = 6/123 (4%)
Query: 11 SAQVVGNAFVEQYYHILHQSPGLVHRFY-QDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69
S VG FV QYY +L+++P +HRFY +SS + +G V + I++RI L
Sbjct: 2 SHMSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYI-----HGESKLVVGQREIHNRIQQL 56
Query: 70 NYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDV 129
N+ D A+I DAQ + GV+V VTG L+ ++FTQTF LA Q Y+V ND+
Sbjct: 57 NFNDCHAKISQVDAQATLGNGVVVQVTGELSNDGQPMRRFTQTFVLAAQSPKKYYVHNDI 116
Query: 130 FRF 132
FR+
Sbjct: 117 FRY 119
>pdb|3Q90|A Chain A, Crystal Structure Of The Ntf2 Domain Of Ras
Gtpase-Activating Protein- Binding Protein 1
pdb|3Q90|B Chain B, Crystal Structure Of The Ntf2 Domain Of Ras
Gtpase-Activating Protein- Binding Protein 1
Length = 140
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 5/128 (3%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSS--LLSRPDSNGS-MTTVTTMKAINDRI 66
PS +VG FV QYY +L+Q+P ++HRFY +S + DSNG V K I+ ++
Sbjct: 7 PSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKV 66
Query: 67 LSLNYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDK--GGYF 124
+S N+ + +I+ DA + GV+V V G L+ + ++F QTF LAP+ ++
Sbjct: 67 MSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFY 126
Query: 125 VLNDVFRF 132
V ND+FR+
Sbjct: 127 VHNDIFRY 134
>pdb|1ZO2|A Chain A, Structure Of Nuclear Transport Factor 2 (Ntf2) From
Cryptosporidium Parvum
pdb|1ZO2|B Chain B, Structure Of Nuclear Transport Factor 2 (Ntf2) From
Cryptosporidium Parvum
Length = 129
Score = 62.8 bits (151), Expect = 3e-10, Method: Composition-based stats.
Identities = 39/123 (31%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69
P +G FV+ YY + + Y S+L+ D T I ++ SL
Sbjct: 9 PQFDQIGKQFVQHYYQTFQTNRPALGGLYGPQSMLTWED-----TQFQGQANIVNKFNSL 63
Query: 70 NYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDV 129
N++ EI D Q S G IV VTG + D KF+Q F L P GG+ + ND+
Sbjct: 64 NFQRVQFEITRVDCQPSPNNGSIVFVTGDVRIDDGQPLKFSQVFNLMPSGNGGFMIFNDL 123
Query: 130 FRF 132
FR
Sbjct: 124 FRL 126
>pdb|1GY7|A Chain A, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|B Chain B, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|C Chain C, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|D Chain D, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GYB|A Chain A, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|B Chain B, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|C Chain C, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|D Chain D, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
Length = 125
Score = 48.9 bits (115), Expect = 5e-06, Method: Composition-based stats.
Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 8/105 (7%)
Query: 35 HRFYQDSSLLSRPDSNGSMTTVTT-----MKAINDRILSLNYEDYTAEIKTADAQDSYEK 89
++F D S L N SM T T K I ++++SL ++ I T DAQ +
Sbjct: 18 NQFDTDRSQLGNLYRNESMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPY 77
Query: 90 G-VIVLVTG-CLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRF 132
G V+V++TG L ++ ++F+Q F L P D Y+V ND+FR
Sbjct: 78 GDVLVMITGDLLIDEEQNPQRFSQVFHLIP-DGNSYYVFNDIFRL 121
>pdb|2I38|A Chain A, Solution Structure Of The Rrm Of Srp20
Length = 150
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETP 353
C +YV NL TELE AF +GP++ V V N G F FV FE P
Sbjct: 74 CKVYVGNLGNNGNKTELERAFGYYGPLRS--VWVARNPPG--FAFVEFEDP 120
>pdb|2I2Y|A Chain A, Solution Structure Of The Rrm Of Srp20 Bound To The Rna
Cauc
Length = 150
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETP 353
C +YV NL TELE AF +GP++ V V N G F FV FE P
Sbjct: 74 CKVYVGNLGNNGNKTELERAFGYYGPLRS--VWVARNPPG--FAFVEFEDP 120
>pdb|1ASK|A Chain A, Nuclear Transport Factor 2 (Ntf2) H66a Mutant
pdb|1ASK|B Chain B, Nuclear Transport Factor 2 (Ntf2) H66a Mutant
Length = 127
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 6/123 (4%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69
P + +G++F++ YY + + Y D+S L+ AI +++ SL
Sbjct: 5 PIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQ-----FQGKAAIVEKLSSL 59
Query: 70 NYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDV 129
++ A I D Q + + +I +V G L ++ F Q F L + + ND+
Sbjct: 60 PFQKIQASITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNIND-AWVCTNDM 118
Query: 130 FRF 132
FR
Sbjct: 119 FRL 121
>pdb|1QMA|A Chain A, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|B Chain B, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|C Chain C, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|D Chain D, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
Length = 126
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 6/123 (4%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69
P A+ +G++F++ YY + + Y D+S L+ AI +++ SL
Sbjct: 4 PIAEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQ-----FQGKAAIVEKLSSL 58
Query: 70 NYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDV 129
++ I D Q + + +I +V G L ++ F Q F L + + ND+
Sbjct: 59 PFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNIND-AWVCTNDM 117
Query: 130 FRF 132
FR
Sbjct: 118 FRL 120
>pdb|1GY5|A Chain A, D92n,D94n Double Point Mutant Of Human Nuclear Transport
Factor 2 (Ntf2)
pdb|1GY5|B Chain B, D92n,D94n Double Point Mutant Of Human Nuclear Transport
Factor 2 (Ntf2)
Length = 127
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 6/123 (4%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69
P + +G++F++ YY + + Y D+S L+ AI +++ SL
Sbjct: 5 PIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQ-----FQGKAAIVEKLSSL 59
Query: 70 NYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDV 129
++ I D Q + + +I +V G L +N F Q F L + + ND+
Sbjct: 60 PFQKIQHSITAQDHQPTPDSCIISMVVGQLKANENPIMGFHQMFLLKNIND-AWVCTNDM 118
Query: 130 FRF 132
FR
Sbjct: 119 FRL 121
>pdb|1AR0|A Chain A, Nuclear Transport Factor 2 (Ntf2) E42k Mutant
pdb|1AR0|B Chain B, Nuclear Transport Factor 2 (Ntf2) E42k Mutant
Length = 127
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 6/123 (4%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69
P + +G++F++ YY + + Y D+S L+ AI +++ SL
Sbjct: 5 PIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWKGQQ-----FQGKAAIVEKLSSL 59
Query: 70 NYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDV 129
++ I D Q + + +I +V G L ++ F Q F L + + ND+
Sbjct: 60 PFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNIND-AWVCTNDM 118
Query: 130 FRF 132
FR
Sbjct: 119 FRL 121
>pdb|2KHC|A Chain A, Bruno Rrm3+
Length = 118
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQV-RSNKQGYCFGFVAFETPGSV 356
E EGC++++ +L T T+L F FG + V + + CFGFV+F+ P S
Sbjct: 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSA 95
Query: 357 Q 357
Q
Sbjct: 96 Q 96
>pdb|1OUN|A Chain A, Crystal Structure Of Nuclear Transport Factor 2 (Ntf2)
pdb|1OUN|B Chain B, Crystal Structure Of Nuclear Transport Factor 2 (Ntf2)
pdb|1A2K|A Chain A, Gdpran-Ntf2 Complex
pdb|1A2K|B Chain B, Gdpran-Ntf2 Complex
pdb|1GY6|A Chain A, Ntf2 From Rat, Ammonium Sulphate Conditions
pdb|1GY6|B Chain B, Ntf2 From Rat, Ammonium Sulphate Conditions
Length = 127
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 6/123 (4%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69
P + +G++F++ YY + + Y D+S L+ AI +++ SL
Sbjct: 5 PIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQ-----FQGKAAIVEKLSSL 59
Query: 70 NYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDV 129
++ I D Q + + +I +V G L ++ F Q F L + + ND+
Sbjct: 60 PFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNIND-AWVCTNDM 118
Query: 130 FRF 132
FR
Sbjct: 119 FRL 121
>pdb|2QIY|A Chain A, Yeast Deubiquitinase Ubp3 And Bre5 Cofactor Complex
pdb|2QIY|B Chain B, Yeast Deubiquitinase Ubp3 And Bre5 Cofactor Complex
Length = 154
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 17/143 (11%)
Query: 6 GSPAPSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTT---------- 55
S + Q + AF++ YY + P + FY ++ L+ + T
Sbjct: 5 ASMGVTVQDICFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVK 64
Query: 56 VTTMKAINDRILSLN---YEDYTAEIKTADAQDS--YEKGVIVLVTGCLTGKDNVKKKFT 110
VT + IN + S N ++ T D Q + K ++++ TG + KF
Sbjct: 65 VTGRENIN-KFFSRNDAKVRSLKLKLDTIDFQYTGHLHKSILIMATGEMFWTGTPVYKFC 123
Query: 111 QTFFLAPQDKGGYF-VLNDVFRF 132
QTF L P G F + ND+ RF
Sbjct: 124 QTFILLPSSNGSTFDITNDIIRF 146
>pdb|1U5O|A Chain A, Structure Of The D23a Mutant Of The Nuclear Transport
Carrier Ntf2
pdb|1U5O|B Chain B, Structure Of The D23a Mutant Of The Nuclear Transport
Carrier Ntf2
Length = 127
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 6/123 (4%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69
P + +G++F++ YY + + Y D+S L+ AI +++ SL
Sbjct: 5 PIWEQIGSSFIQHYYQLFANDRTQLGAIYIDASCLTWEGQQ-----FQGKAAIVEKLSSL 59
Query: 70 NYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDV 129
++ I D Q + + +I +V G L ++ F Q F L + + ND+
Sbjct: 60 PFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNIND-AWVCTNDM 118
Query: 130 FRF 132
FR
Sbjct: 119 FRL 121
>pdb|1ZX2|A Chain A, Crystal Structure Of Yeast Ubp3-Associated Protein Bre5
pdb|1ZX2|B Chain B, Crystal Structure Of Yeast Ubp3-Associated Protein Bre5
Length = 147
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 17/142 (11%)
Query: 7 SPAPSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTT----------V 56
S + Q + AF++ YY + P + FY ++ L+ + T V
Sbjct: 1 SMGVTVQDICFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKV 60
Query: 57 TTMKAINDRILSLN---YEDYTAEIKTADAQDS--YEKGVIVLVTGCLTGKDNVKKKFTQ 111
T + IN + S N ++ T D Q + K ++++ TG + KF Q
Sbjct: 61 TGRENIN-KFFSRNDAKVRSLKLKLDTIDFQYTGHLHKSILIMATGEMFWTGTPVYKFCQ 119
Query: 112 TFFLAPQDKGGYF-VLNDVFRF 132
TF L P G F + ND+ RF
Sbjct: 120 TFILLPSSNGSTFDITNDIIRF 141
>pdb|1JB4|A Chain A, Crystal Structure Of Ntf2 M102e Mutant
pdb|1JB4|B Chain B, Crystal Structure Of Ntf2 M102e Mutant
Length = 127
Score = 37.4 bits (85), Expect = 0.014, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 6/123 (4%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69
P + +G++F+ YY + + Y D+S L+ AI +++ SL
Sbjct: 5 PIWEQIGSSFINHYYQLFDNDRTQLGAIYIDASCLTWEGQQ-----FQGKAAIVEKLSSL 59
Query: 70 NYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDV 129
++ I D Q + + +I +V G L ++ F Q F L + + ND+
Sbjct: 60 PFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQEFLLKNIND-AWVCTNDM 118
Query: 130 FRF 132
FR
Sbjct: 119 FRL 121
>pdb|1H6K|Z Chain Z, Nuclear Cap Binding Complex
pdb|1H6K|X Chain X, Nuclear Cap Binding Complex
pdb|1H6K|Y Chain Y, Nuclear Cap Binding Complex
Length = 98
Score = 37.4 bits (85), Expect = 0.017, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 297 NEEAE-----GCSIYVRNLAFTTTSTELEEAFKIFGPIKK--NGVQVRSNKQGYCF 345
NEE E C++YV NL+F TT ++ E F G IKK G+ G+CF
Sbjct: 8 NEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKTACGFCF 63
>pdb|1JB5|A Chain A, Crystal Structure Of Ntf2 M118e Mutant
pdb|1JB5|B Chain B, Crystal Structure Of Ntf2 M118e Mutant
Length = 127
Score = 36.2 bits (82), Expect = 0.032, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 6/123 (4%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69
P + +G++F+ YY + + Y D+S L+ AI +++ SL
Sbjct: 5 PIWEQIGSSFINHYYQLFDNDRTQLGAIYIDASCLTWEGQQ-----FQGKAAIVEKLSSL 59
Query: 70 NYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDV 129
++ I D Q + + +I +V G L ++ F Q F L + + ND
Sbjct: 60 PFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNIND-AWVCTNDE 118
Query: 130 FRF 132
FR
Sbjct: 119 FRL 121
>pdb|2CPF|A Chain A, Solution Structure Of The Penultimate Rna Recognition
Motif Of Hypothetical Rna-Binding Protein Rbm19
Length = 98
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYC----FGFVAFETPGSVQ 357
++++NL F+TT L+ F G IK + + NK G FGFV ++ P Q
Sbjct: 8 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQ 64
>pdb|1JB2|A Chain A, Crystal Structure Of Ntf2 M84e Mutant
pdb|1JB2|B Chain B, Crystal Structure Of Ntf2 M84e Mutant
Length = 127
Score = 35.4 bits (80), Expect = 0.053, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 6/123 (4%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69
P + +G++F+ YY + + Y D+S L+ AI +++ SL
Sbjct: 5 PIWEQIGSSFINHYYQLFDNDRTQLGAIYIDASCLTWEGQQ-----FQGKAAIVEKLSSL 59
Query: 70 NYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDV 129
++ I D Q + + +I V G L ++ F Q F L + + ND+
Sbjct: 60 PFQKIQHSITAQDHQPTPDSCIISEVVGQLKADEDPIMGFHQMFLLKNIND-AWVCTNDM 118
Query: 130 FRF 132
FR
Sbjct: 119 FRL 121
>pdb|1WHW|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain
From Hypothetical Protein Bab23448
Length = 99
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRS-NKQGYCFGFVAFETP 353
++VRNL++T++ +LE+ F +GP+ + + S K+ F FV F P
Sbjct: 11 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFP 60
>pdb|1H2T|Z Chain Z, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|X Chain X, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|Y Chain Y, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2V|Z Chain Z, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
pdb|1N52|B Chain B, Cap Binding Complex
pdb|1N54|B Chain B, Cap Binding Complex M7gpppg Free
pdb|3FEX|B Chain B, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|B Chain B, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 156
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 16/78 (20%)
Query: 284 ALSSDGAPENSNV--------NEEAE-----GCSIYVRNLAFTTTSTELEEAFKIFGPIK 330
AL SD E S NEE E C++YV NL+F TT ++ E F G IK
Sbjct: 8 ALRSDSYVELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIK 67
Query: 331 K--NGV-QVRSNKQGYCF 345
K G+ +++ G+CF
Sbjct: 68 KIIMGLDKMKKTACGFCF 85
>pdb|2HVZ|A Chain A, Solution Structure Of The Rrm Domain Of Sr Rich Factor 9g8
Length = 101
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETP 353
+YV NL ELE AF +GP++ V + N G F FV FE P
Sbjct: 3 VYVGNLGTGAGKGELERAFSYYGPLRT--VWIARNPPG--FAFVEFEDP 47
>pdb|2F3J|A Chain A, The Solution Structure Of The Ref2-I Mrna Export Factor
(Residues 1-155)
Length = 177
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 5/119 (4%)
Query: 235 SYASIVKVMKGYNISSAAYVPARKARPTPPNADQQSPA-MAKPAPVPEASALSSDGAPEN 293
S I+K+ + + P R+ RP + PA ++P P+P+ D
Sbjct: 22 SLDDIIKLNRNQRRVNRGGGP-RRNRPAIARGGRNRPAPYSRPKPLPDK--WQHDLFDSG 78
Query: 294 SNVNEEAE-GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFE 351
E E G + V NL F + +++E F FG +KK V + + V FE
Sbjct: 79 CGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFE 137
>pdb|2DGV|A Chain A, Solution Structure Of The Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein M
Length = 92
Score = 33.5 bits (75), Expect = 0.21, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETP 353
C I+VRNL F T L++ F G + +++ + K C G V FE+P
Sbjct: 8 ACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGC-GVVKFESP 58
>pdb|3SDE|A Chain A, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
Pspc1NONO
Length = 261
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAF 350
G ++ V+NL+ ++ LE+AF FGP++K V V + GFV F
Sbjct: 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEF 144
>pdb|2CJK|A Chain A, Structure Of The Rna Binding Domain Of Hrp1 In Complex
With Rna
pdb|2KM8|C Chain C, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 167
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 301 EGCSIYVRNLAFTTTSTELEEAFKIFG-----PIKKNGVQVRSNKQGYCFGFVAFETPGS 355
E C +++ L + TT L E F +G I K+ RS FGF++FE P S
Sbjct: 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSR----GFGFLSFEKPSS 57
Query: 356 V 356
V
Sbjct: 58 V 58
>pdb|2RS2|A Chain A, 1h, 13c, And 15n Chemical Shift Assignments For Musashi1
Rbd1:r(Guagu) Complex
Length = 109
Score = 32.3 bits (72), Expect = 0.52, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRS-NKQGYCFGFVAF 350
+ GC +++ L++ TT L E F FG +K+ V K+ FGFV F
Sbjct: 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 74
>pdb|3PGW|S Chain S, Crystal Structure Of Human U1 Snrnp
pdb|3PGW|L Chain L, Crystal Structure Of Human U1 Snrnp
Length = 437
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 304 SIYVRNLAFTTTSTELEEAFKIFGPIKKNGV--QVRSNK-QGYCF 345
+++V + + TT ++L F+++GPIK+ + RS K +GY F
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAF 148
>pdb|1X5S|A Chain A, Solution Structure Of Rrm Domain In A18 Hnrnp
Length = 102
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKK-NGVQVRSNKQGYCFGFVAFE 351
++V L+F T LE+ F +G I + V+ R ++ FGFV FE
Sbjct: 15 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFE 62
>pdb|3CW1|K Chain K, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|6 Chain 6, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|7 Chain 7, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|8 Chain 8, Crystal Structure Of Human Spliceosomal U1 Snrnp
Length = 216
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 304 SIYVRNLAFTTTSTELEEAFKIFGPIKKNGV--QVRSNK-QGYCF 345
+++V + + TT ++L F+++GPIK+ + RS K +GY F
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAF 148
>pdb|2KXF|A Chain A, Solution Structure Of The First Two Rrm Domains Of
Fbp-Interacting Repressor (Fir)
pdb|2KXH|A Chain A, Solution Structure Of The First Two Rrm Domains Of Fir In
The Complex With Fbp Nbox Peptide
Length = 199
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGY-CFGFVAFETPGSVQ 357
C +YV ++ + + +AF FGPIK + S + F FV +E P + Q
Sbjct: 14 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQ 69
>pdb|2DK2|A Chain A, Solution Structure Of Rrm Domain In Heterogeneous Nuclear
Ribonucleoprotein R (Hnrnp R)
Length = 97
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGS 355
++VRNLA T T LE++F FG +++ V+ K + FV FE G+
Sbjct: 18 LFVRNLATTVTEEILEKSFSEFGKLER----VKKLKD---YAFVHFEDRGA 61
>pdb|3UWT|A Chain A, Crystal Structure Of A Rna Binding Domain Of Poly-U
Binding Splicing Factor 60kda (Puf60) From Homo Sapiens
At 2.50 A Resolution
Length = 200
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKK---NGVQVRSNKQGYCFGFVAFETPGSVQ 357
C +YV ++ + + +AF FGPIK + V +G F FV +E P + Q
Sbjct: 13 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDXSWDSVTXKHKG--FAFVEYEVPEAAQ 68
>pdb|2G7U|A Chain A, 2.3 A Structure Of Putative Catechol Degradative Operon
Regulator From Rhodococcus Sp. Rha1
pdb|2G7U|B Chain B, 2.3 A Structure Of Putative Catechol Degradative Operon
Regulator From Rhodococcus Sp. Rha1
pdb|2G7U|C Chain C, 2.3 A Structure Of Putative Catechol Degradative Operon
Regulator From Rhodococcus Sp. Rha1
pdb|2G7U|D Chain D, 2.3 A Structure Of Putative Catechol Degradative Operon
Regulator From Rhodococcus Sp. Rha1
Length = 257
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 58/153 (37%), Gaps = 22/153 (14%)
Query: 214 NEVHASVDSAPVAQGDAPEKKSYASIVKVMKGYNISSAAYVPARKARPTPPNADQQSPAM 273
+E HA +++A + EK ++ + V+ G ++ AA VP R+ + + PA
Sbjct: 80 SESHALIEAAXPRLLEVAEKTQESASLGVLDGADVVYAARVPVRRIXSINVSVGTRVPAY 139
Query: 274 AK----------PAPVPE---ASALSSDGAPENSNVNEEAEGCSIYVRNLAFTTTSTELE 320
A PA V E A + PE E E VR F TS ELE
Sbjct: 140 ATSXGRALLAWAPADVVERVVAESTFQKLGPETIGTAAELERELAKVREQGFALTSEELE 199
Query: 321 EAF-KIFGPIKKNGVQVRSNKQGYCFGFVAFET 352
+ + P+ G G G VA T
Sbjct: 200 KGLISLAAPVHDAG--------GTVVGVVACST 224
>pdb|2DGU|A Chain A, Solution Structure Of The Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein Q
Length = 103
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKK 331
++VRNLA T T LE+AF FG +++
Sbjct: 14 LFVRNLANTVTEEILEKAFSQFGKLER 40
>pdb|2FHO|B Chain B, Nmr Solution Structure Of The Human Spliceosomal Protein
Complex P14-Sf3b155
Length = 87
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFE 351
+Y+RNL + T+ E+ + F +GPI++ ++V + + +V +E
Sbjct: 15 LYIRNLPYKITAEEMYDIFGKYGPIRQ--IRVGNTPETRGTAYVVYE 59
>pdb|2D9P|A Chain A, Solution Structure Of Rna Binding Domain 4 In
Polyadenylation Binding Protein 3
Length = 103
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETP 353
+YV+NL L +AF FG I V + + FGFV F +P
Sbjct: 18 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRS-KGFGFVCFSSP 65
>pdb|2L10|A Chain A, Structure Of The Talin Rod Residues, Domain C
Length = 158
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 228 GDAPEKKSYASIVKVMKGYNISSAAYVPARKAR---PTPPNADQQSPAMAK 275
G AP ++ A +V +KG ++SS+ + A KA P PN Q A A+
Sbjct: 91 GQAPSQEDRAQVVSNLKGISMSSSKLLLAAKALSTDPASPNLKSQLAAAAR 141
>pdb|3TQI|A Chain A, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|B Chain B, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|C Chain C, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|D Chain D, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
Length = 527
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 276 PAPVPE-ASALSSDGAPENSNVNEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGV 334
P P P A + + + E N+ ++A+ +I++ L + ++ +AF +F P+K GV
Sbjct: 404 PFPGPGLAIRILGEVSAEYINILKQAD--AIFIEELKKSDYYHQVSQAFAVFMPLKSVGV 461
Query: 335 QVRSNKQGYCFGFVAFET 352
+ + GY A +T
Sbjct: 462 KGDARHYGYIIALRAVKT 479
>pdb|2DH9|A Chain A, Solution Structure Of The C-Terminal Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein M
Length = 89
Score = 30.0 bits (66), Expect = 2.6, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETP 353
I+VRNL F T L++ F G + +++ + K C G V FE+P
Sbjct: 8 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGC-GVVKFESP 55
>pdb|2RRB|A Chain A, Refinement Of Rna Binding Domain In Human Tra2 Beta
Protein
Length = 96
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKK-NGVQVRSNKQGYCFGFVAFE 351
C + V L+ TT +L E F +GPI + V + +++ F FV FE
Sbjct: 13 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFE 62
>pdb|2CQC|A Chain A, Solution Structure Of The Rna Recognition Motif In
ArginineSERINE-Rich Splicing Factor 10
Length = 95
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKK-NGVQVRSNKQGYCFGFVAFET 352
C + V L+ TT +L E F +GPI + V + +++ F FV FE
Sbjct: 16 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN 66
>pdb|2F9D|A Chain A, 2.5 Angstrom Resolution Structure Of The Spliceosomal
Protein P14 Bound To Region Of Sf3b155
pdb|2F9D|B Chain B, 2.5 Angstrom Resolution Structure Of The Spliceosomal
Protein P14 Bound To Region Of Sf3b155
Length = 125
Score = 29.6 bits (65), Expect = 2.9, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFE 351
+Y+RNL + T+ E+ + F +GPI++ ++V + + +V +E
Sbjct: 21 LYIRNLPYKITAEEMYDIFGKYGPIRQ--IRVGNTPETRGTAYVVYE 65
>pdb|2RRA|A Chain A, Solution Structure Of Rna Binding Domain In Human Tra2
Beta Protein In Complex With Rna (Gaagaa)
Length = 99
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKK-NGVQVRSNKQGYCFGFVAFE 351
C + V L+ TT +L E F +GPI + V + +++ F FV FE
Sbjct: 16 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFE 65
>pdb|3LQV|A Chain A, Branch Recognition By Sf3b14
pdb|3LQV|B Chain B, Branch Recognition By Sf3b14
Length = 115
Score = 29.3 bits (64), Expect = 3.7, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFE 351
+Y+RNL + T+ E+ + F +GPI++ ++V + + +V +E
Sbjct: 11 LYIRNLPYKITAEEMYDIFGKYGPIRQ--IRVGNTPETRGTAYVVYE 55
>pdb|2CQ0|A Chain A, Solution Structure Of Rna Binding Domain In Eukaryotic
Translation Initiation Factor 3 Subunit 4
Length = 103
Score = 29.3 bits (64), Expect = 3.8, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 289 GAPENSNVNEEAE-GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGV-QVRSNKQGYCFG 346
G+ +S N A+ +I V NL+ T T+L+E F+ FG I + + + ++ Q F
Sbjct: 1 GSSGSSGPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFA 60
Query: 347 FVAF 350
F++F
Sbjct: 61 FISF 64
>pdb|1X4H|A Chain A, Solution Structure Of Rrm Domain In Rna-Binding Protein 28
Length = 111
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIK 330
EG ++++RNL+F + L E + FG +K
Sbjct: 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLK 43
>pdb|2KXN|B Chain B, Nmr Structure Of Human Tra2beta1 Rrm In Complex With
Aagaac Rna
Length = 129
Score = 29.3 bits (64), Expect = 4.0, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKK-NGVQVRSNKQGYCFGFVAFE 351
C + V L+ TT +L E F +GPI + V + +++ F FV FE
Sbjct: 47 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFE 96
>pdb|2KI2|A Chain A, Solution Structure Of Ss-Dna Binding Protein 12rnp2
Precursor, Hp0827(O25501_helpy) Form Helicobacter Pylori
Length = 90
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 304 SIYVRNLAFTTTSTELEEAFKIFGPI-KKNGVQVRSNKQGYCFGFVAFE 351
+IYV NL ++ TS +++E F FG + + R K+ FGFV +
Sbjct: 3 NIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQ 51
>pdb|2JVO|A Chain A, Segmental Isotope Labeling Of Npl3
Length = 108
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Query: 291 PENSNVNEEAEG----CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFG 346
P S+++ EG ++VR +EL E F FGP+K+ V++ + F
Sbjct: 16 PRGSHMHHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKE--VKILNG-----FA 68
Query: 347 FVAFE 351
FV FE
Sbjct: 69 FVEFE 73
>pdb|2CPH|A Chain A, Solution Structure Of The C-Terminal Rna Recognition Motif
Of Hypothetical Rna-Binding Protein Rbm19
Length = 107
Score = 28.9 bits (63), Expect = 5.1, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQG--YCFGFVAFET 352
I VRN+ F E+ E F FG +K + + G FGFV F T
Sbjct: 18 ILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFIT 67
>pdb|1X5O|A Chain A, Solution Structure Of Rrm Domain In Rna Binding Motif,
Single-Stranded Interacting Protein 1
Length = 114
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 29/71 (40%)
Query: 282 ASALSSDGAPENSNVNEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQ 341
+S L + G +E + ++Y+ NL + ELE K FG + + S+
Sbjct: 5 SSGLKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGT 64
Query: 342 GYCFGFVAFET 352
GF E+
Sbjct: 65 SRGVGFARMES 75
>pdb|3SDE|B Chain B, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
Pspc1NONO
Length = 261
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAF 350
S+ VRNL ++ LEEAF +FG +++ V V + G V F
Sbjct: 97 ASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEF 144
>pdb|2DGS|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Daz- Associated Protein 1
Length = 99
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQG-YCFGFVAFETPGSV 356
I+V + TEL E FK FG + + + + KQ FGF+ FE SV
Sbjct: 13 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 65
>pdb|3MD3|A Chain A, Crystal Structure Of The First Two Rrm Domains Of Yeast
Poly Binding Protein (Pub1)
Length = 166
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFE 351
+YV NL T L++ F++ GPI + + N + + FV +
Sbjct: 3 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYH 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,119,758
Number of Sequences: 62578
Number of extensions: 443607
Number of successful extensions: 889
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 852
Number of HSP's gapped (non-prelim): 64
length of query: 402
length of database: 14,973,337
effective HSP length: 101
effective length of query: 301
effective length of database: 8,652,959
effective search space: 2604540659
effective search space used: 2604540659
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)