BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015694
(402 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94260|G3BP_SCHPO Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=nxt3 PE=1 SV=1
Length = 434
Score = 98.6 bits (244), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 97/349 (27%), Positives = 151/349 (43%), Gaps = 57/349 (16%)
Query: 15 VGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDY 74
+G FV++YY L++ P +H FY S L D S++ + I+++IL L++++
Sbjct: 18 IGWMFVQEYYTYLNKEPNRLHCFYTKKSTLIHGDEGESISLCHGQQEIHNKILDLDFQNC 77
Query: 75 TAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRFVE 134
I D+ S G+++ V G ++ K + +KF QTFFLA Q GYFVLND+FRF+
Sbjct: 78 KVLISNVDSLASSNGGIVIQVLGEMSNKGKLSRKFAQTFFLAEQ-PNGYFVLNDIFRFLR 136
Query: 135 EN-------------ESLENNSDSVVNETAPTANVTEAPEPAHDQDHIP-----ADRAIV 176
E+ E + S+ VN ++ A E H QD A A++
Sbjct: 137 EDVEEEEESPDAVEKEKKDVASEPYVNGVQSQEHLPSAKEEGHYQDPAATENNFATAALI 196
Query: 177 IEGEDLDNGPEVCDPSDK----EEGSVVEDEIVEPPSNSVQNEVHASVDSAPVAQGD--- 229
D N + P + E SV V N +Q+E S A G
Sbjct: 197 SNETDSLNQATLAVPEEPVIQVTEASV--PSFVSQQENQLQDEALTSNSKNADAIGASDA 254
Query: 230 --APEKKSYASIV-----KVMKGYNISSAAYVPARKARPTPPNADQ-QSPAMAKPAPVPE 281
A KS+A ++ V ++SS A + + NADQ Q P AP +
Sbjct: 255 NVATAPKSWADLIARNHPDVKSQASVSSTASTTGQTVKGV--NADQTQQPT----APYTQ 308
Query: 282 ASALSSDGAPENSNVNEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIK 330
++ L S++V+N+ T+ L+ A IFGP+K
Sbjct: 309 SNELLE---------------TSVFVKNIPPETSDVSLKSAMSIFGPVK 342
>sp|P97855|G3BP1_MOUSE Ras GTPase-activating protein-binding protein 1 OS=Mus musculus
GN=G3bp1 PE=1 SV=1
Length = 465
Score = 91.7 bits (226), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 76/131 (58%), Gaps = 5/131 (3%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRP--DSNGS-MTTVTTMKAINDRI 66
PS +VG FV QYY +L+Q+P ++HRFY +S + DSNG V K I+ ++
Sbjct: 6 PSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYAHGGLDSNGKPADAVYGQKEIHRKV 65
Query: 67 LSLNYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDK--GGYF 124
+S N+ + +I+ DA + GV+V V G L+ + ++F QTF LAP+ ++
Sbjct: 66 MSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFY 125
Query: 125 VLNDVFRFVEE 135
V ND+FR+ +E
Sbjct: 126 VHNDIFRYQDE 136
>sp|Q13283|G3BP1_HUMAN Ras GTPase-activating protein-binding protein 1 OS=Homo sapiens
GN=G3BP1 PE=1 SV=1
Length = 466
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 76/131 (58%), Gaps = 5/131 (3%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSS--LLSRPDSNGS-MTTVTTMKAINDRI 66
PS +VG FV QYY +L+Q+P ++HRFY +S + DSNG V K I+ ++
Sbjct: 6 PSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKV 65
Query: 67 LSLNYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDK--GGYF 124
+S N+ + +I+ DA + GV+V V G L+ + ++F QTF LAP+ ++
Sbjct: 66 MSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFY 125
Query: 125 VLNDVFRFVEE 135
V ND+FR+ +E
Sbjct: 126 VHNDIFRYQDE 136
>sp|Q5RB87|G3BP1_PONAB Ras GTPase-activating protein-binding protein 1 OS=Pongo abelii
GN=G3BP1 PE=2 SV=1
Length = 466
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 76/131 (58%), Gaps = 5/131 (3%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSS--LLSRPDSNGS-MTTVTTMKAINDRI 66
PS +VG FV QYY +L+Q+P ++HRFY +S + DSNG V K I+ ++
Sbjct: 6 PSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKV 65
Query: 67 LSLNYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDK--GGYF 124
+S N+ + +I+ DA + GV+V V G L+ + ++F QTF LAP+ ++
Sbjct: 66 MSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFY 125
Query: 125 VLNDVFRFVEE 135
V ND+FR+ +E
Sbjct: 126 VHNDIFRYQDE 136
>sp|Q32LC7|G3BP1_BOVIN Ras GTPase-activating protein-binding protein 1 OS=Bos taurus
GN=G3BP PE=2 SV=1
Length = 465
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 76/131 (58%), Gaps = 5/131 (3%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSS--LLSRPDSNGS-MTTVTTMKAINDRI 66
PS +VG FV QYY +L+Q+P ++HRFY +S + DSNG V K I+ ++
Sbjct: 6 PSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKV 65
Query: 67 LSLNYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDK--GGYF 124
+S N+ + +I+ DA + GV+V V G L+ + ++F QTF LAP+ ++
Sbjct: 66 MSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFY 125
Query: 125 VLNDVFRFVEE 135
V ND+FR+ +E
Sbjct: 126 VHNDIFRYQDE 136
>sp|P97379|G3BP2_MOUSE Ras GTPase-activating protein-binding protein 2 OS=Mus musculus
GN=G3bp2 PE=1 SV=2
Length = 482
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 75/131 (57%), Gaps = 5/131 (3%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSS--LLSRPDSNGS-MTTVTTMKAINDRI 66
PS +VG FV QYY +L+++P +HRFY +S + D++G V I+ ++
Sbjct: 6 PSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKV 65
Query: 67 LSLNYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDK--GGYF 124
LSLN+ + +I+ DA + GV+V V G L+ ++KF QTF LAP+ ++
Sbjct: 66 LSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFY 125
Query: 125 VLNDVFRFVEE 135
V ND+FR+ +E
Sbjct: 126 VHNDMFRYEDE 136
>sp|Q5R9L3|G3BP2_PONAB Ras GTPase-activating protein-binding protein 2 OS=Pongo abelii
GN=G3BP2 PE=2 SV=1
Length = 482
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 75/131 (57%), Gaps = 5/131 (3%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSS--LLSRPDSNGS-MTTVTTMKAINDRI 66
PS +VG FV QYY +L+++P +HRFY +S + D++G V I+ ++
Sbjct: 6 PSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKV 65
Query: 67 LSLNYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDK--GGYF 124
LSLN+ + +I+ DA + GV+V V G L+ ++KF QTF LAP+ ++
Sbjct: 66 LSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFY 125
Query: 125 VLNDVFRFVEE 135
V ND+FR+ +E
Sbjct: 126 VHNDMFRYEDE 136
>sp|Q9UN86|G3BP2_HUMAN Ras GTPase-activating protein-binding protein 2 OS=Homo sapiens
GN=G3BP2 PE=1 SV=2
Length = 482
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 75/131 (57%), Gaps = 5/131 (3%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSS--LLSRPDSNGS-MTTVTTMKAINDRI 66
PS +VG FV QYY +L+++P +HRFY +S + D++G V I+ ++
Sbjct: 6 PSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKV 65
Query: 67 LSLNYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDK--GGYF 124
LSLN+ + +I+ DA + GV+V V G L+ ++KF QTF LAP+ ++
Sbjct: 66 LSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFY 125
Query: 125 VLNDVFRFVEE 135
V ND+FR+ +E
Sbjct: 126 VHNDMFRYEDE 136
>sp|Q96VN3|NTF2_EMENI Nuclear transport factor 2 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ntf2 PE=3
SV=1
Length = 125
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 13 QVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYE 72
Q + FV YY + + Y+D S+L+ S + + I +++ SL ++
Sbjct: 5 QSIAQQFVTFYYQTFDGNRAGLAPLYRDHSMLTFETS-----AIQGVAGIIEKLTSLPFQ 59
Query: 73 DYTAEIKTADAQDSYEKG-VIVLVTG-CLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVF 130
++ T DAQ S E G ++VLVTG L ++ +TQTF L P G YFVLNDVF
Sbjct: 60 KVQHQVSTLDAQPSGEHGGILVLVTGALLVDEEKNPMNYTQTFQLMPDGAGSYFVLNDVF 119
Query: 131 RFV 133
R +
Sbjct: 120 RLI 122
>sp|Q86HW7|NTF2_DICDI Nuclear transport factor 2 OS=Dictyostelium discoideum GN=nutf2
PE=1 SV=1
Length = 127
Score = 59.7 bits (143), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 8/126 (6%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69
P VG FVE YY I + + + YQ + L+ ++ AI I+ L
Sbjct: 6 PQVVGVGKQFVEHYYGIFDSNRAGLTQIYQQQTTLTWEGK-----FLSGADAIVKHIVEL 60
Query: 70 NYEDYTAEIKTADAQDSYEKGVIVLVTGCLT--GKDNVKKKFTQTFFLAPQDKGGYFVLN 127
++ +I + D Q +Y+ G+++ VTG L G+ + KF Q F LA + G + ++N
Sbjct: 61 PFQQTNRKINSIDCQQTYQPGIMITVTGTLIIDGEAKNQLKFVQVFNLA-SNNGSFLLIN 119
Query: 128 DVFRFV 133
D FR V
Sbjct: 120 DFFRLV 125
>sp|Q7ZWM3|CEL3B_XENLA CUGBP Elav-like family member 3-B OS=Xenopus laevis GN=tnrc4-b PE=2
SV=1
Length = 462
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 25/175 (14%)
Query: 198 SVVEDEIVEPPSNSV-QNEVHASVDSAPVAQGDAPEKKSYASIVKVMKGYNISSAAYVPA 256
+V V+P S ++ N +H +PVAQ D P +++YA M+ Y +AAY
Sbjct: 294 AVPTQSTVQPSSEAIYTNGLHPYPAQSPVAQLD-PLQQAYAG----MQHY---TAAY--- 342
Query: 257 RKARPTPPNADQQSPAMAKPAPVPEASALSSDGAPENSNVNEEAEGCSIYVRNLAFTTTS 316
P SPA +P A+ + P+ E EGC+I++ +L T
Sbjct: 343 ------PAAYGLVSPAFTQP------PAILTQQPPQQQQQREGPEGCNIFIYHLPQEFTD 390
Query: 317 TELEEAFKIFGPIKKNGVQV-RSNKQGYCFGFVAFETPGSVQSALEVLSLISLSL 370
+E+ + F FG + V V R+ Q CFGFV+F+ PGS Q+A++ ++ + +
Sbjct: 391 SEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQSMNGFQIGM 445
>sp|Q9XJ54|NTF2_ORYSJ Nuclear transport factor 2 OS=Oryza sativa subsp. japonica GN=NTF2
PE=2 SV=1
Length = 122
Score = 55.5 bits (132), Expect = 8e-07, Method: Composition-based stats.
Identities = 45/124 (36%), Positives = 60/124 (48%), Gaps = 10/124 (8%)
Query: 12 AQVVGNAFVEQYYHILHQS-PGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN 70
A V AFVE YY + P LV YQD S+L+ AI ++ SL
Sbjct: 3 ADAVAKAFVEHYYRTFDTNRPALV-SLYQDGSMLTFEGQQ-----FLGAAAIAGKLGSLP 56
Query: 71 YEDYTAEIKTADAQDS-YEKGVIVLVTGCL-TGKDNVKKKFTQTFFLAPQDKGGYFVLND 128
+ +I T D Q S + G++V V+G L TG D KF+Q F L P G ++V ND
Sbjct: 57 FAQCHHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPAG-GNFYVQND 115
Query: 129 VFRF 132
+FR
Sbjct: 116 MFRL 119
>sp|Q10100|NTF2_SCHPO Nuclear transport factor 2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ntf2 PE=3 SV=2
Length = 123
Score = 54.3 bits (129), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Query: 15 VGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDY 74
+ F + YY + Y++ S+LS + T KAI ++++SL ++
Sbjct: 7 LATQFTQFYYQTFDSDRSQLSSLYREESMLSFEGAQLQGT-----KAIVEKLVSLPFQRV 61
Query: 75 TAEIKTADAQDSYEKG-VIVLVTG-CLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRF 132
I T DAQ + G VIV+VTG L ++ + ++++Q F L + G Y+VLND+FR
Sbjct: 62 QHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLV-NNNGNYYVLNDLFRL 120
>sp|Q9C7F5|NTF2_ARATH Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=2
SV=1
Length = 126
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 9/120 (7%)
Query: 15 VGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDY 74
V AFVE YY + + YQ++S+L+ + +++I ++ SL ++
Sbjct: 9 VSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQK-----IQGVQSIVAKLTSLPFQQC 63
Query: 75 TAEIKTADAQDSY-EKGVIVLVTGCL--TGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFR 131
I T D Q S G++V V+G L G+++ K F+Q F L P +G ++V ND+FR
Sbjct: 64 KHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALK-FSQMFHLMPTPQGSFYVFNDIFR 122
>sp|Q91579|CEL3A_XENLA CUGBP Elav-like family member 3-A OS=Xenopus laevis GN=tnrc4-a PE=2
SV=2
Length = 462
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 297 NEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQV-RSNKQGYCFGFVAFETPGS 355
E EGC+I++ +L T +E+ + F FG + V V R+ Q CFGFV+F+ PGS
Sbjct: 371 REGPEGCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGS 430
Query: 356 VQSALEVLSLISLSL 370
Q+A++ ++ + +
Sbjct: 431 AQAAIQAMNGFQIGM 445
>sp|Q08E07|CELF3_BOVIN CUGBP Elav-like family member 3 OS=Bos taurus GN=CELF3 PE=2 SV=1
Length = 461
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 15/158 (9%)
Query: 214 NEVHASVDSAPVAQGDAPEKKSYASIVKVMKGYNISSAAYVPARKARPTPPNADQQSPAM 273
N VH +P A D P +++YA M+ Y AAY A P PP
Sbjct: 301 NGVHPYPAQSPAAPVD-PLQQAYAG----MQHYTAYPAAYSLVAPAFPQPP--------- 346
Query: 274 AKPAPVPEASALSSDGAPENSNVNEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNG 333
A A P + E +GC+I++ +L T +E+ + F FG +
Sbjct: 347 ALVAQQPPPPPQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAK 406
Query: 334 VQV-RSNKQGYCFGFVAFETPGSVQSALEVLSLISLSL 370
V V R+ Q CFGFV+F+ P S Q+A++ ++ + +
Sbjct: 407 VFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGM 444
>sp|P87102|NTF2_NEUCR Nuclear transport factor 2 OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=ntf-2 PE=2 SV=1
Length = 124
Score = 52.4 bits (124), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 15 VGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDY 74
+ FV YY + Y+D+S+L+ + + I +++ SL ++
Sbjct: 8 IATQFVAHYYSTFDSDRKNLAGLYRDNSMLTFEGAQS-----LGAQGITEKLTSLPFQKV 62
Query: 75 TAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKK-KFTQTFFLAPQDKGGYFVLNDVFRFV 133
E DAQ + G+I+LVTG L D + ++Q F L+ G +FV ND+F+ V
Sbjct: 63 KHEYGPPDAQPTATGGIIILVTGQLIVDDEQRPLGYSQAFQLSQDASGQWFVFNDIFKLV 122
>sp|Q6FRC6|NTF2_CANGA Nuclear transport factor 2 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=NTF2 PE=3
SV=1
Length = 125
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 8/119 (6%)
Query: 15 VGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDY 74
+ F E YY+ + Y+D S+L+ S + K+I ++++SL ++
Sbjct: 8 LAQQFTEFYYNQFDSDRSQLGNLYRDESMLTFETSQ-----LQGAKSIVEKLVSLPFQKV 62
Query: 75 TAEIKTADAQDSYEKG-VIVLVTGCLTGKDNVK-KKFTQTFFLAPQDKGGYFVLNDVFR 131
I T DAQ + G V+V++TG L D ++F+Q F L P D Y+V ND+FR
Sbjct: 63 AHRITTLDAQPASPNGDVLVMITGDLLIDDEQNPQRFSQVFHLIP-DGNSYYVFNDIFR 120
>sp|Q7SG09|MRD1_NEUCR Multiple RNA-binding domain-containing protein 1 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=mrd-1 PE=3 SV=1
Length = 827
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 271 PAMAKPAPVPEASALSSDGAPENSNVNEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIK 330
P A+PA V + S E + E+ E S++VRNL F+TTS L +AFK
Sbjct: 570 PTDARPAGVQKPSVAD---LLERDDAEEQLETSSLFVRNLNFSTTSQGLTDAFKHLDGFV 626
Query: 331 KNGVQVRSNKQ------GYCFGFVAFETPGSVQSALEVL 363
+ V+ +++ + FGFVAF T Q+AL+V+
Sbjct: 627 QAKVKTKTDPKKPGQVLSMGFGFVAFRTKDQAQAALKVM 665
>sp|Q9IBD1|CELF3_DANRE CUGBP Elav-like family member 3 OS=Danio rerio GN=celf3 PE=2 SV=2
Length = 452
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 297 NEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQV-RSNKQGYCFGFVAFETPGS 355
E EGC+I++ +L T +E+ + F FG + V V R+ Q CFGFV+F+ P S
Sbjct: 361 REGPEGCNIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPAS 420
Query: 356 VQSALEVLSLISLSL 370
Q+A++ ++ + +
Sbjct: 421 AQAAIQAMNGFQIGM 435
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3
Length = 960
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYC----FGFVAFETPGSVQ 357
GC+++++NL F TT +L+E F G +K + + NK G FGFV + P Q
Sbjct: 729 GCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQ 788
Query: 358 SALEVL 363
AL+ L
Sbjct: 789 KALKQL 794
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 14/82 (17%)
Query: 286 SSDGAPENSNVNEE-------------AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKN 332
++ GAP+N+ + + AE ++VRNL +T+T +LE+ F +GP+ +
Sbjct: 372 TTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSEL 431
Query: 333 GVQVRS-NKQGYCFGFVAFETP 353
+ S K+ F F+ F P
Sbjct: 432 HYPIDSLTKKPKGFAFITFMFP 453
>sp|Q8N6W0|CELF5_HUMAN CUGBP Elav-like family member 5 OS=Homo sapiens GN=CELF5 PE=1 SV=1
Length = 485
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 297 NEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQV-RSNKQGYCFGFVAFETPGS 355
E EGC++++ +L TEL + F FG I + V + R+ Q CFGFV+F+ P S
Sbjct: 394 REGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPAS 453
Query: 356 VQSALEVLSLISLSL 370
Q+A++ ++ + +
Sbjct: 454 AQAAIQAMNGFQIGM 468
>sp|Q8NJ52|NTF2_DAVTA Nuclear transport factor 2 OS=Davidiella tassiana GN=NTF2 PE=1 SV=1
Length = 125
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 15 VGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDY 74
+ F E YY + Y+++S+L+ S T I ++ L ++
Sbjct: 7 IAQQFTEFYYKTFDTDRAQLAPLYRENSMLTFEQSPFLGTA-----NIVGKLQELPFQRI 61
Query: 75 TAEIKTADAQDSYEKG-VIVLVTGCLTGKDNVK-KKFTQTFFLAPQDKGGYFVLNDVFRF 132
++ T DAQ S E G ++V+V+G L ++ + +TQTF L P D G Y+V NDVFR
Sbjct: 62 EHQVATVDAQPSNESGGILVVVSGALLVEEERRPMSYTQTFQLLPAD-GAYYVFNDVFRL 120
Query: 133 V 133
V
Sbjct: 121 V 121
>sp|Q75AA5|NTF2_ASHGO Nuclear transport factor 2 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NTF2 PE=3 SV=1
Length = 125
Score = 50.8 bits (120), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 8/120 (6%)
Query: 15 VGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDY 74
+ F E YY+ + Y+D S+L+ S + K I ++++SL ++
Sbjct: 8 LAQQFTEFYYNQFDTDRSQLGNLYRDQSMLTFETSQ-----LQGAKDIVEKLVSLPFQKV 62
Query: 75 TAEIKTADAQDSYEKG-VIVLVTGCLTGKDNVK-KKFTQTFFLAPQDKGGYFVLNDVFRF 132
I T DAQ + G V+V++TG L D ++F+Q F L P+ Y+V ND+FR
Sbjct: 63 QHRITTLDAQPASPNGDVLVMITGDLLIDDEQNAQRFSQVFHLMPEGNS-YYVFNDIFRL 121
>sp|Q21735|NTF2_CAEEL Probable nuclear transport factor 2 OS=Caenorhabditis elegans
GN=ran-4 PE=3 SV=1
Length = 133
Score = 50.8 bits (120), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 7/127 (5%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRIL-- 67
P + V AF++ YY G+ Q S L P+ N MT D IL
Sbjct: 5 PDYESVAKAFIQHYYSKFDVGDGMSRA--QGLSDLYDPE-NSYMTFEGQQAKGRDGILQK 61
Query: 68 --SLNYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFV 125
+L + I D+Q Y+ + V+V G L ++ F+Q F L P ++G YF+
Sbjct: 62 FTTLGFTKIQRAITVIDSQPLYDGSIQVMVLGQLKTDEDPINPFSQVFILRPNNQGSYFI 121
Query: 126 LNDVFRF 132
N++FR
Sbjct: 122 GNEIFRL 128
>sp|Q5SZQ8|CELF3_HUMAN CUGBP Elav-like family member 3 OS=Homo sapiens GN=CELF3 PE=1 SV=1
Length = 465
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 297 NEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQV-RSNKQGYCFGFVAFETPGS 355
E +GC+I++ +L T +E+ + F FG + V V R+ Q CFGFV+F+ P S
Sbjct: 374 REGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPAS 433
Query: 356 VQSALEVLSLISLSL 370
Q+A++ ++ + +
Sbjct: 434 AQAAIQAMNGFQIGM 448
>sp|Q6DGV1|CELF4_DANRE CUGBP Elav-like family member 4 OS=Danio rerio GN=celf4 PE=2 SV=1
Length = 520
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 297 NEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQV-RSNKQGYCFGFVAFETPGS 355
E EGC++++ +L EL + F FG + + V V R+ Q CFGFV+F+ PGS
Sbjct: 429 REGPEGCNLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPGS 488
Query: 356 VQSALEVLSLISLSL 370
Q+A++ ++ + +
Sbjct: 489 AQAAIQSMNGFQIGM 503
>sp|Q8CIN6|CELF3_MOUSE CUGBP Elav-like family member 3 OS=Mus musculus GN=Celf3 PE=2 SV=1
Length = 465
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 297 NEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQV-RSNKQGYCFGFVAFETPGS 355
E +GC+I++ +L T +E+ + F FG + V V R+ Q CFGFV+F+ P S
Sbjct: 374 REGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPAS 433
Query: 356 VQSALEVLSLISLSL 370
Q+A++ ++ + +
Sbjct: 434 AQAAIQAMNGFQIGM 448
>sp|Q9P926|NTF2_CANAX Nuclear transport factor 2 OS=Candida albicans GN=NTF2 PE=3 SV=1
Length = 124
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 35 HRFYQDSSLLSRPDSNGSMTTVTT-----MKAINDRILSLNYEDYTAEIKTADAQDSYEK 89
++F D S L N SM T T + I +++ SL ++ I T DAQ +
Sbjct: 18 NQFDSDRSQLGNLYRNESMLTFETSQLQGARDIVEKLASLPFQKVAHRISTLDAQPASAN 77
Query: 90 G-VIVLVTG-CLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFR 131
G ++V+VTG L ++ ++++Q F L P D G Y+V ND+FR
Sbjct: 78 GDILVMVTGELLIDEEQNAQRYSQVFHLIP-DNGSYYVFNDIFR 120
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1
Length = 952
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYC----FGFVAFETPGSVQ 357
GC+++++NL F+TT L+ F G IK + + NK G FGFV ++ P Q
Sbjct: 721 GCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQ 780
Query: 358 SALEVL 363
AL+ L
Sbjct: 781 KALKQL 786
Score = 37.4 bits (85), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 292 ENSNVNEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRS-NKQGYCFGFVAF 350
EN + A+ ++VRNL++T++ +LE+ F +GP+ + + S K+ F FV F
Sbjct: 389 ENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTF 448
Query: 351 ETP 353
P
Sbjct: 449 MFP 451
>sp|A0JM51|CELF5_XENTR CUGBP Elav-like family member 5 OS=Xenopus tropicalis GN=celf5 PE=2
SV=1
Length = 486
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 297 NEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQV-RSNKQGYCFGFVAFETPGS 355
E EGC++++ +L EL + F FG I + V + R+ Q CFGFV+F+ P S
Sbjct: 395 REGPEGCNLFIYHLPQEFGDNELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPSS 454
Query: 356 VQSALEVLSLISLSL 370
Q+A++ ++ + +
Sbjct: 455 AQTAIQAMNGFQIGM 469
>sp|Q6CC82|NTF2_YARLI Nuclear transport factor 2 OS=Yarrowia lipolytica (strain CLIB 122
/ E 150) GN=NTF2 PE=3 SV=1
Length = 123
Score = 48.1 bits (113), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 8/116 (6%)
Query: 19 FVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEI 78
F E YY + Y+D S+L+ + T +AI ++++ L + +I
Sbjct: 12 FCEFYYQTFDTDRSQLGNLYRDHSMLTF-----TGTQHQGAQAIVEKLVGLPFGQVRHKI 66
Query: 79 KTADAQDSYEKG--VIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRF 132
DAQ + +G VIVLVTG L + + Q F L P D Y+V ND+FR
Sbjct: 67 SDIDAQPASAQGGDVIVLVTGELCVDGDNPLPYAQVFHLIP-DGSSYYVFNDIFRL 121
>sp|Q96J87|CELF6_HUMAN CUGBP Elav-like family member 6 OS=Homo sapiens GN=CELF6 PE=1 SV=1
Length = 481
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 297 NEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQV-RSNKQGYCFGFVAFETPGS 355
E EGC++++ +L EL + F FG + V V R+ Q CFGFV+F+ P S
Sbjct: 390 REGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTS 449
Query: 356 VQSALEVLSLISLSL 370
Q+A++ ++ + +
Sbjct: 450 AQTAIQAMNGFQIGM 464
>sp|P33331|NTF2_YEAST Nuclear transport factor 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NTF2 PE=1 SV=2
Length = 125
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 35 HRFYQDSSLLSRPDSNGSMTTVTT-----MKAINDRILSLNYEDYTAEIKTADAQDSYEK 89
++F D S L N SM T T K I ++++SL ++ I T DAQ +
Sbjct: 18 NQFDTDRSQLGNLYRNESMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPN 77
Query: 90 G-VIVLVTG-CLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFR 131
G V+V++TG L ++ ++F+Q F L P D Y+V ND+FR
Sbjct: 78 GDVLVMITGDLLIDEEQNPQRFSQVFHLIP-DGNSYYVFNDIFR 120
>sp|Q7TN33|CELF6_MOUSE CUGBP Elav-like family member 6 OS=Mus musculus GN=Celf6 PE=2 SV=1
Length = 460
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 297 NEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQV-RSNKQGYCFGFVAFETPGS 355
E EGC++++ +L EL + F FG + V V R+ Q CFGFV+F+ P S
Sbjct: 369 REGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTS 428
Query: 356 VQSALEVLSLISLSL 370
Q+A++ ++ + +
Sbjct: 429 AQTAIQAMNGFQIGM 443
>sp|Q6CQX4|NTF2_KLULA Nuclear transport factor 2 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=NTF2 PE=3 SV=1
Length = 125
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 8/119 (6%)
Query: 15 VGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDY 74
+ F E YY+ + Y++ S+L+ T + K I ++++SL ++
Sbjct: 8 LAQQFTEFYYNQFDSDRTQLGNLYREQSMLT-----FETTQLQGAKDIVEKLVSLPFQKV 62
Query: 75 TAEIKTADAQDSYEKG-VIVLVTG-CLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFR 131
I T DAQ + G V+V++TG L ++ ++F+Q F L P + Y+V ND+FR
Sbjct: 63 AHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMP-EGSSYYVYNDIFR 120
>sp|Q811R2|PRGC2_RAT Peroxisome proliferator-activated receptor gamma coactivator 1-beta
OS=Rattus norvegicus GN=Ppargc1b PE=2 SV=2
Length = 1010
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 281 EASALSSDGAPENSNVNEE-----AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQ 335
E+ SDG P + + EG +Y+RNL+ +S EL++ F++FG I + V
Sbjct: 862 ESRGPCSDGTPSARHAKKRREKAIGEGRVVYIRNLSGDMSSRELKKRFEVFGEIVECQV- 920
Query: 336 VRSNKQGYCFGFVAFETPGSVQSALEV 362
+R +K+G GF+ F S +AL V
Sbjct: 921 LRRSKRGQKHGFITFRC--SEHAALSV 945
>sp|Q8VHJ7|PRGC2_MOUSE Peroxisome proliferator-activated receptor gamma coactivator 1-beta
OS=Mus musculus GN=Ppargc1b PE=1 SV=1
Length = 1014
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 281 EASALSSDGAPENSNVNEE-----AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQ 335
E+ SDG P + + EG +Y+RNL+ +S EL++ F++FG I + V
Sbjct: 866 ESRGPCSDGTPSVRHARKRREKAIGEGRVVYIRNLSSDMSSRELKKRFEVFGEIVECQVL 925
Query: 336 VRSNKQGYCFGFVAFETPGSVQSALEV 362
RS K+G GF+ F S +AL V
Sbjct: 926 TRS-KRGQKHGFITFRC--SEHAALSV 949
>sp|Q6BWC0|NTF2_DEBHA Nuclear transport factor 2 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=NTF2 PE=3 SV=1
Length = 124
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Query: 15 VGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDY 74
V + F YY + Y++ S+L+ S + K I ++++SL ++
Sbjct: 8 VASEFCNFYYQQFDSDRTQLGNLYREQSMLTFETSQ-----LQGAKDIVEKLVSLPFQKV 62
Query: 75 TAEIKTADAQDSYEKG-VIVLVTGCLTGKDNVK-KKFTQTFFLAPQDKGGYFVLNDVFR 131
I T DAQ G ++V+VTG L D ++++Q F L P D Y+V ND+FR
Sbjct: 63 AHRISTLDAQPGSPNGDILVMVTGELIIDDEQNAQRYSQVFHLIP-DGNSYYVFNDIFR 120
>sp|P84104|SRSF3_MOUSE Serine/arginine-rich splicing factor 3 OS=Mus musculus GN=Srsf3
PE=1 SV=1
Length = 164
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEV 362
C +YV NL TELE AF +GP++ V V N G F FV FE P A+
Sbjct: 10 CKVYVGNLGNNGNKTELERAFGYYGPLRS--VWVARNPPG--FAFVEFEDPRDAADAVRE 65
Query: 363 LSLISL 368
L +L
Sbjct: 66 LDGRTL 71
>sp|P84103|SRSF3_HUMAN Serine/arginine-rich splicing factor 3 OS=Homo sapiens GN=SRSF3
PE=1 SV=1
Length = 164
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEV 362
C +YV NL TELE AF +GP++ V V N G F FV FE P A+
Sbjct: 10 CKVYVGNLGNNGNKTELERAFGYYGPLRS--VWVARNPPG--FAFVEFEDPRDAADAVRE 65
Query: 363 LSLISL 368
L +L
Sbjct: 66 LDGRTL 71
>sp|Q3SZR8|SRSF3_BOVIN Serine/arginine-rich splicing factor 3 OS=Bos taurus GN=SRSF3 PE=2
SV=1
Length = 164
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEV 362
C +YV NL TELE AF +GP++ V V N G F FV FE P A+
Sbjct: 10 CKVYVGNLGNNGNKTELERAFGYYGPLRS--VWVARNPPG--FAFVEFEDPRDAADAVRE 65
Query: 363 LSLISL 368
L +L
Sbjct: 66 LDGRTL 71
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSAL 360
+G +++++NL T S +LEE FK FG I V V + FGFV F +P + A
Sbjct: 333 QGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSP---EEAT 389
Query: 361 EVLSLISLSLIIKIVLGVYI-----ISRTFIEVQI 390
+ ++ ++ +I L V + + R+ +E QI
Sbjct: 390 KAITEMNQRMIYGKPLYVALAQRKDVRRSQLEQQI 424
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSAL 360
+G +++V+NL T S +LEE FK FG I V V + FGFV F TP + A
Sbjct: 334 QGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTP---EEAT 390
Query: 361 EVLSLISLSLIIKIVLGVYI-----ISRTFIEVQI 390
+ ++ ++ +I L V + + R+ +E QI
Sbjct: 391 KAITEMNTRMINGKPLYVALAQRKDVRRSQLEQQI 425
Score = 32.3 bits (72), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEV 362
+IYV+N+ + E+ F FG I ++ + + FGFV FE S A+E
Sbjct: 233 TNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEE 292
Query: 363 LS 364
L+
Sbjct: 293 LN 294
>sp|Q9W4D2|RNP4F_DROME RNA-binding protein 4F OS=Drosophila melanogaster GN=Rnp4F PE=1
SV=1
Length = 941
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 257 RKARPTPPNADQQSPAMAKPAPVPEASALSSDGAPENSNVNEEAEGCSIYVRNLAFTTTS 316
+K+R P P+ K EA + +P N +N+ I+VRNL +
Sbjct: 685 KKSRTEPSGGATSPPSKVKGPANAEAKESNFKYSP-NMEINK------IFVRNLHPACSK 737
Query: 317 TELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSAL 360
EL E F FG IK + + NKQ +V FE PG Q A+
Sbjct: 738 EELHELFSPFGTIKDVRLVHKLNKQFKGIAYVEFEKPGEAQRAV 781
>sp|P53741|BRE5_YEAST UBP3-associated protein BRE5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BRE5 PE=1 SV=1
Length = 515
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 17/132 (12%)
Query: 18 AFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTT----------VTTMKAINDRIL 67
AF++ YY + P + FY ++ L+ + T VT + IN +
Sbjct: 11 AFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGRENIN-KFF 69
Query: 68 SLN---YEDYTAEIKTADAQ--DSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGG 122
S N ++ T D Q K ++++ TG + KF QTF L P G
Sbjct: 70 SRNDAKVRSLKLKLDTIDFQYTGHLHKSILIMATGEMFWTGTPVYKFCQTFILLPSSNGS 129
Query: 123 YF-VLNDVFRFV 133
F + ND+ RF+
Sbjct: 130 TFDITNDIIRFI 141
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSAL 360
+G +++V+NL S +LEE FK FG I + V V + FGFV F TP A+
Sbjct: 349 QGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAI 408
Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 304 SIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL 363
+I+++NL + L + F FG I V Q CFGFV +ET + Q+A+E +
Sbjct: 156 NIFIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESV 215
Query: 364 SLISLS 369
+ + L+
Sbjct: 216 NGMLLN 221
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEV 362
+IYV+N+ T E EE F FG I ++ + + FGFV FE + A+E
Sbjct: 248 TNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEE 307
Query: 363 LS 364
L+
Sbjct: 308 LN 309
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSAL 360
+G +++++NL T S +LEE FK FG I V V + FGFV F +P A+
Sbjct: 334 QGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAI 393
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 292 ENSNVNEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFE 351
E N E+++G ++Y++NL + +L+E F +G + + V + FGFVA+
Sbjct: 321 ERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYS 380
Query: 352 TPGSVQSALEVLSLISLSLIIKIVLGVYIISR 383
P + AL LS ++ +I + L + + R
Sbjct: 381 NP---EEALRALSEMNGKMIGRKPLYIALAQR 409
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEV 362
++YV+NL EL + F FG I V + CFGFV FE + SA+E
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Query: 363 LSLISL 368
++ ISL
Sbjct: 289 MNGISL 294
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 304 SIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL 363
+I+++NL + + L E F FG I V + + +GFV FE S Q+A++ L
Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 364 S 364
+
Sbjct: 197 N 197
>sp|Q9P2K5|MYEF2_HUMAN Myelin expression factor 2 OS=Homo sapiens GN=MYEF2 PE=1 SV=3
Length = 600
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 290 APENSNVNEE--AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGF 347
P S + E ++G I+VRNL F T +L+E F G + +++ + K C G
Sbjct: 508 GPMGSGMRERIGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGC-GT 566
Query: 348 VAFETPGSVQSALEVLSLISLS 369
V F++P S + A +++ I +S
Sbjct: 567 VRFDSPESAEKACRIMNGIKIS 588
Score = 36.2 bits (82), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 294 SNVNEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETP 353
SN+ G +I+V NL F +L+E F I G +K+ ++ + + G V FE
Sbjct: 224 SNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFE-- 281
Query: 354 GSVQSALEVLSLISL 368
A+E + IS+
Sbjct: 282 ----QAIEAVQAISM 292
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,161,387
Number of Sequences: 539616
Number of extensions: 6577377
Number of successful extensions: 21160
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 340
Number of HSP's that attempted gapping in prelim test: 20605
Number of HSP's gapped (non-prelim): 836
length of query: 402
length of database: 191,569,459
effective HSP length: 120
effective length of query: 282
effective length of database: 126,815,539
effective search space: 35761981998
effective search space used: 35761981998
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)