Query 015694
Match_columns 402
No_of_seqs 429 out of 1864
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:42:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015694.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015694hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0116 RasGAP SH3 binding pro 100.0 4.2E-57 9E-62 449.9 29.4 357 1-379 2-366 (419)
2 KOG2104 Nuclear transport fact 100.0 1.2E-33 2.5E-38 228.7 11.6 121 11-136 5-125 (126)
3 cd00780 NTF2 Nuclear transport 100.0 8.7E-32 1.9E-36 227.8 14.4 118 11-134 1-119 (119)
4 PF02136 NTF2: Nuclear transpo 99.9 6.4E-26 1.4E-30 190.9 12.5 113 15-132 1-118 (118)
5 KOG4353 RNA export factor NXT1 99.9 1.4E-23 3.1E-28 172.5 6.5 116 12-135 12-137 (139)
6 PLN03134 glycine-rich RNA-bind 99.6 6.1E-15 1.3E-19 128.8 11.3 82 301-382 33-116 (144)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 1.3E-13 2.7E-18 137.3 13.8 83 300-382 267-351 (352)
8 PF00076 RRM_1: RNA recognitio 99.5 1.3E-13 2.8E-18 104.1 8.6 69 305-373 1-70 (70)
9 KOG0149 Predicted RNA-binding 99.5 6.2E-14 1.4E-18 127.9 7.2 81 301-381 11-92 (247)
10 TIGR01659 sex-lethal sex-letha 99.4 8E-13 1.7E-17 131.3 12.9 83 297-379 102-186 (346)
11 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 7.3E-13 1.6E-17 131.8 11.8 80 302-381 3-84 (352)
12 KOG0125 Ataxin 2-binding prote 99.4 1.4E-12 3.1E-17 123.8 11.4 78 302-380 96-174 (376)
13 PF14259 RRM_6: RNA recognitio 99.4 2.1E-12 4.6E-17 98.1 8.6 69 305-373 1-70 (70)
14 PLN03120 nucleic acid binding 99.4 2.5E-12 5.5E-17 120.9 10.6 77 302-380 4-80 (260)
15 KOG0121 Nuclear cap-binding pr 99.4 1.2E-12 2.7E-17 108.8 7.0 78 300-377 34-113 (153)
16 KOG0107 Alternative splicing f 99.3 3.6E-12 7.8E-17 111.5 7.9 74 301-378 9-83 (195)
17 TIGR01645 half-pint poly-U bin 99.3 5.9E-12 1.3E-16 132.1 10.6 80 302-381 204-285 (612)
18 TIGR01645 half-pint poly-U bin 99.3 6E-12 1.3E-16 132.1 9.8 78 300-377 105-184 (612)
19 KOG0122 Translation initiation 99.3 2.7E-11 5.9E-16 111.1 12.7 83 298-380 185-269 (270)
20 KOG0113 U1 small nuclear ribon 99.3 1.4E-11 3.1E-16 115.8 10.3 81 300-380 99-181 (335)
21 PLN03121 nucleic acid binding 99.3 2.4E-11 5.1E-16 112.7 10.3 77 300-378 3-79 (243)
22 smart00362 RRM_2 RNA recogniti 99.2 4.3E-11 9.3E-16 89.4 9.1 70 304-374 1-71 (72)
23 KOG0146 RNA-binding protein ET 99.2 5.2E-12 1.1E-16 117.0 4.8 84 298-381 281-366 (371)
24 TIGR01628 PABP-1234 polyadenyl 99.2 2.4E-11 5.1E-16 128.8 10.2 84 300-383 283-367 (562)
25 TIGR01659 sex-lethal sex-letha 99.2 3.7E-11 8E-16 119.5 10.8 80 302-381 193-276 (346)
26 TIGR01628 PABP-1234 polyadenyl 99.2 3.6E-11 7.7E-16 127.4 10.5 77 304-380 2-80 (562)
27 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1.4E-10 3E-15 121.3 14.6 80 301-380 294-375 (509)
28 PLN03213 repressor of silencin 99.2 4E-11 8.7E-16 119.2 9.6 76 300-378 8-86 (759)
29 TIGR01648 hnRNP-R-Q heterogene 99.2 6.2E-11 1.3E-15 124.2 10.8 77 302-378 58-136 (578)
30 KOG0105 Alternative splicing f 99.2 2.6E-11 5.6E-16 107.0 6.5 77 302-380 6-83 (241)
31 KOG0126 Predicted RNA-binding 99.2 3.1E-12 6.7E-17 112.4 0.6 86 298-383 31-118 (219)
32 KOG0114 Predicted RNA-binding 99.2 1.5E-10 3.2E-15 93.1 9.9 75 301-377 17-92 (124)
33 KOG0131 Splicing factor 3b, su 99.2 2.1E-11 4.5E-16 107.4 5.3 98 301-398 8-112 (203)
34 KOG0148 Apoptosis-promoting RN 99.2 7.2E-11 1.6E-15 109.7 9.1 80 298-382 160-240 (321)
35 TIGR01622 SF-CC1 splicing fact 99.2 1.1E-10 2.4E-15 120.4 11.0 77 302-378 186-264 (457)
36 KOG4207 Predicted splicing fac 99.2 2.8E-11 6.1E-16 108.5 5.6 81 302-382 13-95 (256)
37 cd00590 RRM RRM (RNA recogniti 99.2 2.3E-10 5.1E-15 85.8 9.6 73 304-376 1-74 (74)
38 KOG0148 Apoptosis-promoting RN 99.2 5.2E-11 1.1E-15 110.7 6.9 96 302-397 62-165 (321)
39 TIGR01622 SF-CC1 splicing fact 99.2 1.6E-10 3.4E-15 119.2 11.1 80 299-378 86-166 (457)
40 KOG0117 Heterogeneous nuclear 99.2 1.7E-10 3.7E-15 113.7 10.6 86 300-386 81-169 (506)
41 smart00360 RRM RNA recognition 99.1 2E-10 4.4E-15 85.2 8.4 69 307-375 1-71 (71)
42 COG0724 RNA-binding proteins ( 99.1 1.7E-10 3.7E-15 108.1 9.9 78 302-379 115-194 (306)
43 KOG0124 Polypyrimidine tract-b 99.1 3.2E-11 6.9E-16 116.0 4.3 74 302-375 113-188 (544)
44 KOG0127 Nucleolar protein fibr 99.1 1.5E-10 3.3E-15 116.5 9.0 84 299-382 289-380 (678)
45 KOG0111 Cyclophilin-type pepti 99.1 9.3E-11 2E-15 106.0 4.1 82 301-382 9-92 (298)
46 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 6.2E-10 1.3E-14 115.9 10.8 77 299-379 272-350 (481)
47 KOG0130 RNA-binding protein RB 99.1 3.8E-10 8.2E-15 94.9 7.1 86 297-382 67-154 (170)
48 TIGR01648 hnRNP-R-Q heterogene 99.1 7.5E-10 1.6E-14 116.2 10.6 75 302-383 233-310 (578)
49 KOG0145 RNA-binding protein EL 99.0 1.2E-09 2.5E-14 101.2 10.5 81 301-381 40-122 (360)
50 KOG0127 Nucleolar protein fibr 99.0 4.7E-10 1E-14 113.0 8.4 81 302-382 117-198 (678)
51 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 7.1E-10 1.5E-14 115.4 10.1 73 302-379 2-77 (481)
52 KOG0108 mRNA cleavage and poly 99.0 6.8E-10 1.5E-14 112.4 8.9 81 303-383 19-101 (435)
53 KOG0144 RNA-binding protein CU 99.0 3.1E-09 6.7E-14 104.6 9.9 86 298-383 30-120 (510)
54 KOG0145 RNA-binding protein EL 98.9 4.9E-09 1.1E-13 97.1 9.5 77 301-377 277-355 (360)
55 PF13893 RRM_5: RNA recognitio 98.9 5.1E-09 1.1E-13 76.1 7.7 55 319-377 1-56 (56)
56 KOG0147 Transcriptional coacti 98.9 1.6E-09 3.5E-14 109.5 6.6 81 302-382 278-360 (549)
57 KOG0117 Heterogeneous nuclear 98.9 3.3E-09 7.2E-14 104.8 7.0 76 302-384 259-335 (506)
58 KOG0131 Splicing factor 3b, su 98.9 3.6E-09 7.8E-14 93.4 6.1 83 301-383 95-180 (203)
59 smart00361 RRM_1 RNA recogniti 98.9 1E-08 2.2E-13 78.3 7.9 59 316-374 2-69 (70)
60 KOG0415 Predicted peptidyl pro 98.8 4.5E-09 9.8E-14 101.0 6.7 77 301-377 238-316 (479)
61 KOG4205 RNA-binding protein mu 98.8 4.8E-09 1E-13 102.1 4.6 83 301-383 5-88 (311)
62 KOG0144 RNA-binding protein CU 98.8 1E-08 2.3E-13 100.9 6.9 86 295-380 417-504 (510)
63 KOG0123 Polyadenylate-binding 98.8 1.9E-08 4E-13 100.9 8.3 77 305-383 79-156 (369)
64 KOG0109 RNA-binding protein LA 98.7 1.8E-08 4E-13 94.8 5.6 71 303-380 3-74 (346)
65 TIGR01642 U2AF_lg U2 snRNP aux 98.7 4.7E-08 1E-12 102.2 8.4 73 299-376 172-256 (509)
66 KOG0110 RNA-binding protein (R 98.7 6.4E-08 1.4E-12 100.6 8.8 76 303-378 516-596 (725)
67 KOG4205 RNA-binding protein mu 98.6 3.8E-08 8.3E-13 95.8 6.4 87 301-387 96-183 (311)
68 KOG0132 RNA polymerase II C-te 98.6 5.4E-08 1.2E-12 101.8 7.8 78 302-384 421-499 (894)
69 KOG4212 RNA-binding protein hn 98.6 6.9E-08 1.5E-12 95.2 8.1 75 302-376 44-120 (608)
70 KOG0153 Predicted RNA-binding 98.6 8E-08 1.7E-12 92.5 7.7 74 301-379 227-302 (377)
71 KOG4206 Spliceosomal protein s 98.6 1.1E-07 2.5E-12 86.9 7.7 78 302-381 9-91 (221)
72 KOG0109 RNA-binding protein LA 98.6 7.2E-08 1.6E-12 90.8 5.4 73 301-380 77-150 (346)
73 KOG4661 Hsp27-ERE-TATA-binding 98.6 3.7E-07 8.1E-12 92.6 10.8 81 299-379 402-484 (940)
74 KOG0124 Polypyrimidine tract-b 98.5 1.3E-07 2.9E-12 91.4 6.8 80 301-380 209-290 (544)
75 KOG0110 RNA-binding protein (R 98.5 5E-08 1.1E-12 101.4 4.1 78 302-379 613-692 (725)
76 KOG0123 Polyadenylate-binding 98.5 2.2E-07 4.9E-12 93.2 8.7 83 303-392 2-85 (369)
77 KOG4208 Nucleolar RNA-binding 98.5 4.2E-07 9.2E-12 82.0 7.4 79 302-380 49-130 (214)
78 KOG0151 Predicted splicing reg 98.4 8.7E-07 1.9E-11 92.1 8.9 81 297-377 169-254 (877)
79 KOG0146 RNA-binding protein ET 98.4 5.6E-07 1.2E-11 83.9 6.8 85 300-384 17-105 (371)
80 cd00531 NTF2_like Nuclear tran 98.4 5E-06 1.1E-10 68.1 11.3 115 17-132 2-123 (124)
81 KOG0533 RRM motif-containing p 98.4 1.2E-06 2.6E-11 82.3 8.4 79 302-380 83-162 (243)
82 KOG4212 RNA-binding protein hn 98.3 1.3E-06 2.9E-11 86.4 7.0 74 299-376 533-607 (608)
83 PF10429 Mtr2: Nuclear pore RN 98.2 3.8E-06 8.2E-11 73.4 7.9 99 14-118 5-109 (166)
84 KOG1548 Transcription elongati 98.2 3.1E-06 6.6E-11 81.7 7.9 82 301-382 133-223 (382)
85 KOG4209 Splicing factor RNPS1, 98.2 2.1E-06 4.5E-11 80.7 5.9 82 299-380 98-180 (231)
86 KOG0226 RNA-binding proteins [ 98.2 2.3E-06 5E-11 79.4 5.5 82 299-380 187-270 (290)
87 KOG0106 Alternative splicing f 98.1 2.1E-06 4.6E-11 79.1 4.0 69 303-378 2-71 (216)
88 KOG4660 Protein Mei2, essentia 98.0 6.9E-06 1.5E-10 83.8 4.4 69 301-373 74-143 (549)
89 KOG4454 RNA binding protein (R 97.9 3.7E-06 8E-11 76.6 1.8 74 302-376 9-83 (267)
90 KOG1457 RNA binding protein (c 97.8 0.00021 4.6E-09 65.4 11.3 80 300-379 32-117 (284)
91 KOG0120 Splicing factor U2AF, 97.6 4.7E-05 1E-09 78.2 3.8 84 301-384 288-373 (500)
92 PF04059 RRM_2: RNA recognitio 97.6 0.00057 1.2E-08 55.5 9.3 80 303-382 2-89 (97)
93 PF15008 DUF4518: Domain of un 97.6 0.00065 1.4E-08 64.5 10.7 125 10-134 125-260 (262)
94 COG5175 MOT2 Transcriptional r 97.6 0.0001 2.2E-09 71.1 5.4 94 302-395 114-218 (480)
95 KOG4211 Splicing factor hnRNP- 97.5 0.00027 5.9E-09 71.4 8.0 74 302-377 10-83 (510)
96 KOG3763 mRNA export factor TAP 97.5 0.00042 9.2E-09 71.5 9.4 123 10-134 335-497 (585)
97 PF08777 RRM_3: RNA binding mo 97.5 0.00022 4.8E-09 58.9 5.4 68 302-374 1-74 (105)
98 KOG0147 Transcriptional coacti 97.4 5.8E-05 1.3E-09 77.1 1.9 81 297-377 174-255 (549)
99 KOG4211 Splicing factor hnRNP- 97.2 0.00083 1.8E-08 68.0 7.5 77 302-378 103-180 (510)
100 KOG1457 RNA binding protein (c 97.2 0.00035 7.6E-09 64.1 4.0 63 302-367 210-273 (284)
101 KOG1190 Polypyrimidine tract-b 97.0 0.0021 4.6E-08 63.7 7.9 84 302-389 297-382 (492)
102 KOG0129 Predicted RNA-binding 97.0 0.0023 5E-08 65.3 7.6 62 301-363 258-326 (520)
103 KOG0106 Alternative splicing f 96.9 0.00056 1.2E-08 63.2 2.7 73 302-381 99-172 (216)
104 PF11608 Limkain-b1: Limkain b 96.9 0.0034 7.4E-08 49.2 6.4 67 303-377 3-74 (90)
105 KOG1995 Conserved Zn-finger pr 96.7 0.0023 4.9E-08 62.7 5.0 84 299-382 63-156 (351)
106 KOG4206 Spliceosomal protein s 96.7 0.0062 1.3E-07 56.2 7.3 73 301-377 145-219 (221)
107 KOG0129 Predicted RNA-binding 96.6 0.0068 1.5E-07 61.9 8.0 79 300-378 368-452 (520)
108 KOG4210 Nuclear localization s 96.6 0.0011 2.5E-08 64.3 2.4 81 303-383 185-267 (285)
109 PF13474 SnoaL_3: SnoaL-like d 96.3 0.035 7.6E-07 45.5 9.1 109 17-130 2-116 (121)
110 TIGR02246 conserved hypothetic 96.2 0.13 2.8E-06 42.7 12.7 108 16-129 6-122 (128)
111 KOG1190 Polypyrimidine tract-b 96.1 0.0042 9E-08 61.7 3.0 71 301-376 27-100 (492)
112 KOG2193 IGF-II mRNA-binding pr 96.0 0.0054 1.2E-07 61.1 3.4 82 303-391 2-88 (584)
113 KOG0120 Splicing factor U2AF, 96.0 0.017 3.8E-07 59.7 7.1 60 318-377 425-489 (500)
114 KOG4307 RNA binding protein RB 95.9 0.027 5.9E-07 59.4 8.3 77 300-376 864-943 (944)
115 PF08952 DUF1866: Domain of un 95.8 0.033 7.2E-07 48.4 7.1 55 318-379 52-106 (146)
116 PF14534 DUF4440: Domain of un 95.7 0.11 2.4E-06 41.3 9.4 101 18-125 3-107 (107)
117 KOG1855 Predicted RNA-binding 95.4 0.013 2.9E-07 58.5 3.4 89 299-387 228-331 (484)
118 KOG3152 TBP-binding protein, a 95.3 0.0087 1.9E-07 56.2 1.9 70 302-371 74-157 (278)
119 KOG2068 MOT2 transcription fac 95.3 0.0045 9.7E-08 60.3 -0.2 97 302-399 77-181 (327)
120 KOG1548 Transcription elongati 95.3 0.06 1.3E-06 52.6 7.4 74 300-376 263-348 (382)
121 KOG0115 RNA-binding protein p5 95.2 0.019 4E-07 54.0 3.7 62 302-363 31-92 (275)
122 PF05172 Nup35_RRM: Nup53/35/4 95.1 0.061 1.3E-06 43.9 6.0 70 302-372 6-83 (100)
123 PF14605 Nup35_RRM_2: Nup53/35 95.1 0.059 1.3E-06 38.7 5.2 52 303-360 2-53 (53)
124 KOG1456 Heterogeneous nuclear 95.0 0.072 1.6E-06 52.6 7.1 95 297-396 26-135 (494)
125 KOG2314 Translation initiation 94.7 0.041 9E-07 56.9 4.9 69 302-370 58-133 (698)
126 KOG1456 Heterogeneous nuclear 94.7 0.43 9.3E-06 47.3 11.5 76 299-378 284-361 (494)
127 KOG1365 RNA-binding protein Fu 94.7 0.025 5.4E-07 55.9 3.0 71 303-373 162-236 (508)
128 KOG4849 mRNA cleavage factor I 94.6 0.022 4.9E-07 55.5 2.6 70 302-371 80-153 (498)
129 KOG0128 RNA-binding protein SA 94.4 0.016 3.4E-07 62.5 1.1 76 302-377 736-812 (881)
130 KOG0112 Large RNA-binding prot 94.4 0.044 9.6E-07 59.5 4.3 77 300-381 453-532 (975)
131 KOG1365 RNA-binding protein Fu 94.3 0.071 1.5E-06 52.8 5.3 74 303-376 281-358 (508)
132 KOG0112 Large RNA-binding prot 94.3 0.0091 2E-07 64.6 -1.0 82 297-378 367-449 (975)
133 KOG0128 RNA-binding protein SA 93.7 0.0043 9.4E-08 66.7 -4.6 71 300-370 665-736 (881)
134 KOG1996 mRNA splicing factor [ 93.7 0.21 4.6E-06 47.9 7.0 60 317-376 301-363 (378)
135 KOG4307 RNA binding protein RB 93.6 0.17 3.6E-06 53.8 6.7 82 299-380 431-514 (944)
136 PF12680 SnoaL_2: SnoaL-like d 93.2 0.22 4.7E-06 38.9 5.6 72 20-99 1-75 (102)
137 KOG0105 Alternative splicing f 93.2 0.42 9.2E-06 43.1 7.6 73 302-380 115-188 (241)
138 PF12893 Lumazine_bd_2: Putati 93.2 1.1 2.3E-05 37.1 9.9 104 17-131 7-116 (116)
139 PF10309 DUF2414: Protein of u 92.6 0.73 1.6E-05 34.2 7.0 54 302-363 5-62 (62)
140 KOG2416 Acinus (induces apopto 91.6 0.19 4E-06 52.5 4.0 76 298-378 440-520 (718)
141 KOG4676 Splicing factor, argin 91.1 0.28 6E-06 48.9 4.4 79 303-381 8-90 (479)
142 KOG2202 U2 snRNP splicing fact 90.4 0.14 3E-06 48.3 1.5 61 317-378 83-146 (260)
143 PF15023 DUF4523: Protein of u 90.2 1.8 3.9E-05 37.6 7.9 73 299-377 83-159 (166)
144 cd00781 ketosteroid_isomerase 89.6 2.7 5.9E-05 34.5 8.7 51 17-70 6-57 (122)
145 KOG2253 U1 snRNP complex, subu 88.1 0.74 1.6E-05 48.8 5.1 68 301-376 39-107 (668)
146 PF03467 Smg4_UPF3: Smg-4/UPF3 87.4 0.92 2E-05 41.0 4.7 82 300-381 5-99 (176)
147 KOG4285 Mitotic phosphoprotein 85.7 1.9 4.1E-05 41.8 5.9 74 305-387 200-274 (350)
148 KOG2591 c-Mpl binding protein, 84.5 1.6 3.5E-05 45.5 5.2 70 301-376 174-248 (684)
149 PF08675 RNA_bind: RNA binding 83.2 4.5 9.8E-05 31.9 6.0 54 302-363 9-62 (87)
150 PF08332 CaMKII_AD: Calcium/ca 82.7 29 0.00064 29.6 11.5 111 13-127 3-121 (128)
151 KOG4210 Nuclear localization s 82.5 0.59 1.3E-05 45.5 1.2 81 301-381 87-169 (285)
152 KOG2135 Proteins containing th 81.8 0.89 1.9E-05 46.5 2.1 96 302-402 372-469 (526)
153 PF11767 SET_assoc: Histone ly 80.8 8.3 0.00018 29.0 6.6 55 312-374 10-65 (66)
154 KOG4410 5-formyltetrahydrofola 75.8 11 0.00023 36.5 7.1 50 300-353 328-377 (396)
155 TIGR02096 conserved hypothetic 73.2 27 0.00058 28.6 8.5 60 19-81 3-65 (129)
156 PF04847 Calcipressin: Calcipr 73.2 11 0.00023 34.3 6.4 61 315-380 8-71 (184)
157 PF03880 DbpA: DbpA RNA bindin 69.7 15 0.00032 28.0 5.6 58 312-377 11-74 (74)
158 PF13577 SnoaL_4: SnoaL-like d 68.9 37 0.00081 27.5 8.5 67 16-84 9-78 (127)
159 PF07366 SnoaL: SnoaL-like pol 64.4 58 0.0013 26.7 8.8 59 21-83 5-66 (126)
160 COG4319 Ketosteroid isomerase 63.0 32 0.00069 29.7 6.8 95 29-129 26-128 (137)
161 KOG4660 Protein Mei2, essentia 57.5 8.9 0.00019 40.1 3.0 83 301-383 387-476 (549)
162 KOG4574 RNA-binding protein (c 50.5 11 0.00024 41.5 2.4 75 300-379 296-373 (1007)
163 PF07576 BRAP2: BRCA1-associat 49.5 1.5E+02 0.0033 24.5 10.2 66 303-369 14-81 (110)
164 PF07292 NID: Nmi/IFP 35 domai 46.0 70 0.0015 25.5 5.8 44 346-389 1-47 (88)
165 KOG4676 Splicing factor, argin 46.0 4.7 0.0001 40.5 -1.1 63 303-368 152-214 (479)
166 PF03284 PHZA_PHZB: Phenazine 45.0 2.1E+02 0.0046 25.0 9.4 102 13-116 17-128 (162)
167 PF12642 TpcC: Conjugative tra 43.2 84 0.0018 29.1 7.0 89 14-126 140-231 (232)
168 KOG4454 RNA binding protein (R 43.0 5.3 0.00012 37.1 -1.1 65 299-363 77-145 (267)
169 PF15513 DUF4651: Domain of un 42.6 48 0.001 24.6 4.0 18 317-334 9-26 (62)
170 PF11533 DUF3225: Protein of u 42.3 2.2E+02 0.0047 24.3 10.9 113 13-133 10-123 (125)
171 PF10567 Nab6_mRNP_bdg: RNA-re 38.5 82 0.0018 30.7 6.0 80 299-378 12-106 (309)
172 PF15601 Imm42: Immunity prote 35.5 12 0.00026 32.2 -0.0 67 18-89 16-92 (134)
173 KOG2318 Uncharacterized conser 34.1 1.7E+02 0.0037 31.3 7.9 82 301-382 173-308 (650)
174 cd06404 PB1_aPKC PB1 domain is 30.7 48 0.001 26.1 2.5 47 24-70 22-69 (83)
175 PF08206 OB_RNB: Ribonuclease 29.1 32 0.0007 24.8 1.3 48 342-390 7-55 (58)
176 COG5073 VID24 Vacuolar import 28.8 29 0.00062 32.8 1.2 75 18-103 52-126 (272)
177 KOG1924 RhoA GTPase effector D 27.0 2.7E+02 0.0059 31.1 8.1 25 108-135 406-430 (1102)
178 KOG0804 Cytoplasmic Zn-finger 25.5 2.9E+02 0.0063 28.7 7.6 67 302-369 74-142 (493)
179 PF03468 XS: XS domain; Inter 25.4 68 0.0015 26.8 2.8 46 314-361 29-75 (116)
180 PF12870 Lumazine_bd: Lumazine 25.4 1.2E+02 0.0026 23.8 4.2 44 76-125 67-110 (111)
181 smart00593 RUN domain involved 25.0 40 0.00087 24.7 1.2 44 18-70 12-55 (64)
182 COG0724 RNA-binding proteins ( 23.6 1.2E+02 0.0025 27.5 4.4 40 298-337 221-260 (306)
183 PRK11901 hypothetical protein; 23.2 7.5E+02 0.016 24.6 9.8 59 309-368 249-309 (327)
184 PRK08241 RNA polymerase factor 22.9 4.8E+02 0.01 25.5 8.8 55 12-69 212-267 (339)
185 KOG4381 RUN domain-containing 21.2 26 0.00057 35.3 -0.6 53 15-67 117-178 (368)
186 PF05941 Chordopox_A20R: Chord 21.0 2.3E+02 0.005 28.2 5.8 101 16-130 172-281 (334)
187 COG5353 Uncharacterized protei 20.2 4.3E+02 0.0092 23.3 6.6 55 302-356 87-155 (161)
No 1
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-57 Score=449.86 Aligned_cols=357 Identities=39% Similarity=0.606 Sum_probs=233.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHccCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCCCCcceEEEee
Q 015694 1 MAVQEGSPAPSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKT 80 (402)
Q Consensus 1 ma~~~~~~~~~~~~vg~~FV~~YY~~l~~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~~~~~~~I~~ 80 (402)
|+++..++.++++.||++||+|||++|++.|+.||+||.++|.|+|.|.||+|..++|.++|+++||+|+|..|+++|.+
T Consensus 2 ~~~~~~~~~~~~~~vg~~Fv~qYY~~L~~~P~~lhrfY~~~S~ltr~~~dg~m~s~t~~~~I~~~i~sld~~~~s~eI~t 81 (419)
T KOG0116|consen 2 DAQAMLSPVPTPQLVGNEFVRQYYNVLQNSPSKLHRFYMDDSVLTRPGLDGKMVSVTGLEAIHEKIMSLDYEVCSVEIST 81 (419)
T ss_pred CccccccCCCCHHHHHHHHHHHHHHHHhhChHHHHHHhhccceeeccCCCCceEEEecHHHhhhheeecCCCceeEEEEE
Confidence 44455556899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeeeCCCcEEEEEEEEEEeCCCcccceeEEEEeeEcCCCcEEEEeceEEeecccccccCCCCCCCCCCCCCCCCCCCC
Q 015694 81 ADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRFVEENESLENNSDSVVNETAPTANVTEAP 160 (402)
Q Consensus 81 ~d~q~s~~~~vlv~V~G~l~~~~~~~r~F~qtF~L~~~~~~~y~V~nDifr~~~~~~~~~~~~~~~~~~~~~~~~~~~ep 160 (402)
+|+|.|+++||+|+|+|.|++++.++|+|+|||||+||++ +|||+||||||+|+.+..+.+... +. ++
T Consensus 82 vdsQ~S~~~GvvI~VtG~lt~~~~~rRkF~QtFfLapq~~-~yfVlNDiFRfvde~~~~e~~~~~---vp--------~~ 149 (419)
T KOG0116|consen 82 VDSQASLEKGVVIMVTGYLTNKDGPRRKFSQTFFLAPQEK-GYFVLNDIFRFVDEEFEPEANTDE---VP--------EA 149 (419)
T ss_pred EehhhhccCCeEEEEEEEEEeCCCcceEEEEEEEEeecCC-ceEEEechhhhccccccccccccc---CC--------CC
Confidence 9999999999999999999999999999999999999999 999999999999988611111000 00 00
Q ss_pred CCCCCCCCCCcCcccccccCCCCCCCCcCCCCCCCCCCcccc--CCCCC-CCCCCCCCC---CCCCCCCCCCCCCCCCcc
Q 015694 161 EPAHDQDHIPADRAIVIEGEDLDNGPEVCDPSDKEEGSVVED--EIVEP-PSNSVQNEV---HASVDSAPVAQGDAPEKK 234 (402)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~e--~~~e~-~~~~~~~~~---~~~~~~~~~~~~~~p~k~ 234 (402)
.+....... .++...+.+...+...++....+..|..+ ...+. ...+.+.+. ......+..++.+.+ ++
T Consensus 150 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~~~~ee~v~~~~~~~~p~~~~~~~~-~~ 224 (419)
T KOG0116|consen 150 NPAVVVSVE----KASQLVEAVVESEPEPEPEPKAEDEVEVPEEATVEDEAKEKTKEELVIQQTVSEAPAAPQGDAP-KK 224 (419)
T ss_pred Ccceeeccc----ccccccccccccCCCCcccccccCceeccccccccccccccCchhhcccccccCCCcccccccc-ch
Confidence 000000000 00000000000000000000000000000 00000 011100000 001111222267888 99
Q ss_pred chhhhhhhcccCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCcEEEEccCCCC
Q 015694 235 SYASIVKVMKGYNISSAAYVPARKARPTPPNADQQSPAMAKPAPVPEASALSSDG-APENSNVNEEAEGCSIYVRNLAFT 313 (402)
Q Consensus 235 S~Asi~~~~~~~~~p~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lfVgnLp~~ 313 (402)
|||+++.+++....+......+... .+..+....+. +.....+..+-+.. ..+.++.....++..|||+|||++
T Consensus 225 s~asv~~~~~~~~~~~~~~~~p~~~--~~~~~p~~~~~---~~~~s~~~~p~~~~~~~n~~~~~~~~~~~~i~V~nlP~d 299 (419)
T KOG0116|consen 225 SFASVVKVLKKSAAVQQSKGSPPQI--QPQQQPSTKPQ---AERQSKPPSPVRESKSGNSNNQEPRADGLGIFVKNLPPD 299 (419)
T ss_pred hhhhhhhhcccccccceeccCCCcc--ccccCCccCcc---hhhccCCCCccccccccccCCcceeecccceEeecCCCC
Confidence 9999999877655542222211111 01000000010 00000001110111 112344444556677999999999
Q ss_pred CCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEeee
Q 015694 314 TTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGVY 379 (402)
Q Consensus 314 vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~~ 379 (402)
++..+|+++|++||.|+..+|..+..+ +..|||||+|.+.++++.||++.++.|++|++.|..-..
T Consensus 300 a~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 300 ATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred CCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 999999999999999999999887733 455999999999999999999999999999999876433
No 2
>KOG2104 consensus Nuclear transport factor 2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-33 Score=228.65 Aligned_cols=121 Identities=30% Similarity=0.566 Sum_probs=115.8
Q ss_pred CHHHHHHHHHHHHHHHHccCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeEeeeeCCCc
Q 015694 11 SAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKG 90 (402)
Q Consensus 11 ~~~~vg~~FV~~YY~~l~~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~~~~~~~I~~~d~q~s~~~~ 90 (402)
-++.||..||++||.+||.+|..|..||.+.|+|+|+|. ..+|.++|.+|+.||||+.|++.|+++||||+.+||
T Consensus 5 ~~e~v~~~FvqhYY~~FD~dR~ql~~lY~~~S~LTfEGq-----q~qG~~~IveKl~sLpFqkiqh~IttvD~QPt~~g~ 79 (126)
T KOG2104|consen 5 VYEAVAKAFVQHYYSLFDNDRSQLGALYIDTSMLTFEGQ-----QIQGKDAIVEKLTSLPFQKIQHSITTVDSQPTPDGG 79 (126)
T ss_pred cHHHHHHHHHHHHHHHhcCchhHhhhhhcccceeeEcch-----hhcchHHHHHHHhcCChhhhhceeeecccccCCCCc
Confidence 568999999999999999999999999999999999998 799999999999999999999999999999999999
Q ss_pred EEEEEEEEEEeCCCcccceeEEEEeeEcCCCcEEEEeceEEeeccc
Q 015694 91 VIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRFVEEN 136 (402)
Q Consensus 91 vlv~V~G~l~~~~~~~r~F~qtF~L~~~~~~~y~V~nDifr~~~~~ 136 (402)
|||+|.|.|+.++++..+|+|.|+|.+..+|+|||.|||||+.-++
T Consensus 80 ilv~V~G~Lk~dEd~~~~FsQvF~L~~n~~~~~~v~ndiFRLn~~n 125 (126)
T KOG2104|consen 80 ILVMVVGQLKLDEDPILRFSQVFLLKPNIQGSYYVFNDIFRLNLHN 125 (126)
T ss_pred EEEEEeeeeeeccCCccceeeEEEEeEcCCCCEEEEeeeEEEeccc
Confidence 9999999999999999999999999998767999999999997553
No 3
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=99.98 E-value=8.7e-32 Score=227.85 Aligned_cols=118 Identities=47% Similarity=0.753 Sum_probs=113.3
Q ss_pred CHHHHHHHHHHHHHHHHccCcccccccccCCCeeeccC-CCCccceeccHHHHHHHHhcCCCCcceEEEeeeEeeeeCCC
Q 015694 11 SAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPD-SNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEK 89 (402)
Q Consensus 11 ~~~~vg~~FV~~YY~~l~~~p~~L~~fY~~~S~l~~~~-~~~~~~~~~g~~~I~~~i~sl~~~~~~~~I~~~d~q~s~~~ 89 (402)
++++||++||++||++|+++|+.|++||+++|.|+|.| . .+.|.++|.++|++|+++.++++|.++|||++.++
T Consensus 1 ~~~~v~~~Fv~~YY~~l~~~~~~L~~fY~~~s~~~~~~~~-----~~~g~~~I~~~l~~lp~~~~~~~i~~~d~q~~~~~ 75 (119)
T cd00780 1 SAEDVAKAFVQQYYSIFDNNREGLHRLYGDTSMLSREGMK-----QVTGRDAIVEKLSSLPFQKTKHKITTVDSQPTPSG 75 (119)
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHhhcCCCcEEEECCce-----EecCHHHHHHHHHhCCCcceEEEEEEEeeeEcCCC
Confidence 47899999999999999999999999999999999999 5 78999999999999999889999999999999999
Q ss_pred cEEEEEEEEEEeCCCcccceeEEEEeeEcCCCcEEEEeceEEeec
Q 015694 90 GVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRFVE 134 (402)
Q Consensus 90 ~vlv~V~G~l~~~~~~~r~F~qtF~L~~~~~~~y~V~nDifr~~~ 134 (402)
+|||+|+|.|+.+++..|+|+|+|+|+++++ +|+|.||||||++
T Consensus 76 ~ili~V~G~~~~~~~~~~~F~q~F~L~~~~~-~~~I~nD~fr~~~ 119 (119)
T cd00780 76 GVIVMVTGSLKLDEQPPRKFSQTFVLAPQNG-GYFVLNDIFRFVD 119 (119)
T ss_pred CEEEEEEEEEEECCCCceeEeEEEEEEecCC-eEEEEeeEEEecC
Confidence 9999999999999899999999999999996 9999999999985
No 4
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=99.93 E-value=6.4e-26 Score=190.89 Aligned_cols=113 Identities=36% Similarity=0.658 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHcc-Ccccccccc-cCCCeeeccCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeEee--eeCCCc
Q 015694 15 VGNAFVEQYYHILHQ-SPGLVHRFY-QDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQ--DSYEKG 90 (402)
Q Consensus 15 vg~~FV~~YY~~l~~-~p~~L~~fY-~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~~~~~~~I~~~d~q--~s~~~~ 90 (402)
||+.||++||+.|++ +|+.|++|| .+.|.+.|.+. ..+.|.++|.+++.+|+...++++|.++||| .+.+++
T Consensus 1 v~~~Fv~~Yy~~~d~~~~~~L~~~Y~~~~s~~~~~~~----~~~~G~~~I~~~~~~l~~~~~~~~i~~~d~qp~~~~~~~ 76 (118)
T PF02136_consen 1 VANSFVQQYYQLFDSGDREGLHKLYHDDASFLTWNGN----RPVVGREAIQEFFQSLPATGVQHRITSVDCQPSPSSDGS 76 (118)
T ss_dssp HHHHHHHHHHHHHHHTHGGGGGGGEEEEEEEEEETTE----CEEESHHHHHHHHHHHTTSSEEEEEEEEEEEEEEECCSE
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHcCCCeeecCCCc----hhhhhHHHHHHHHhcCCCcccEEEecccccccccccCCc
Confidence 799999999999999 999999999 67889999886 2589999999999999998889999999999 578999
Q ss_pred EEEEEEEEEEeCCCc-ccceeEEEEeeEcCCCcEEEEeceEEe
Q 015694 91 VIVLVTGCLTGKDNV-KKKFTQTFFLAPQDKGGYFVLNDVFRF 132 (402)
Q Consensus 91 vlv~V~G~l~~~~~~-~r~F~qtF~L~~~~~~~y~V~nDifr~ 132 (402)
|+|+|+|.++..+.+ .|+|+|+|+|.+.++ +|+|.||||||
T Consensus 77 i~i~v~G~~~~~~~~~~~~F~q~FvL~~~~~-~~~I~nd~~r~ 118 (118)
T PF02136_consen 77 ILITVTGQFKEDDNPNPRRFSQTFVLVPQNN-GYFIANDIFRF 118 (118)
T ss_dssp EEEEEEEEEEETTSEEEEEEEEEEEEEEETT-EEEEEEEEEEE
T ss_pred EEEEEEeEEEecCCCcccEEEEEEEEEEcCC-EEEEEeeEEEC
Confidence 999999999998876 699999999999995 99999999998
No 5
>KOG4353 consensus RNA export factor NXT1 [RNA processing and modification]
Probab=99.89 E-value=1.4e-23 Score=172.53 Aligned_cols=116 Identities=26% Similarity=0.399 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHHccCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeEeeeeCC---
Q 015694 12 AQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYE--- 88 (402)
Q Consensus 12 ~~~vg~~FV~~YY~~l~~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~~~~~~~I~~~d~q~s~~--- 88 (402)
+-.-|.+||+.||..|+++|+.|.+||.++|.+.|+|+ .++|.+.|.+.+..||.+ +++|.++||||.++
T Consensus 12 ~cr~A~eFv~~YY~smD~rR~~i~rlY~~~atlvWNGn-----~v~g~esls~ff~~LPsS--~~qi~~lD~Qpv~dqat 84 (139)
T KOG4353|consen 12 ACRAAEEFVNVYYSSMDKRRRGIGRLYLDNATLVWNGN-----PVSGTESLSEFFNMLPSS--EFQINDLDCQPVHDQAT 84 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhccceEEEcCC-----cchhHHHHHHHHHhCCCc--cccccccccccchhhcc
Confidence 34578999999999999999999999999999999998 799999999999999965 79999999998765
Q ss_pred ---CcEEEEEEEEEEeCCCcccceeEEEEeeEcCCCcEE----EEeceEEeecc
Q 015694 89 ---KGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYF----VLNDVFRFVEE 135 (402)
Q Consensus 89 ---~~vlv~V~G~l~~~~~~~r~F~qtF~L~~~~~~~y~----V~nDifr~~~~ 135 (402)
-+|||+|+|.++.+++..|.|.|||+|..+.. .|- |.+|+|||+|.
T Consensus 85 ~~q~~vLvvvsGtVkFdG~k~r~F~qt~ll~~e~~-~~k~~~~v~Sd~fr~~d~ 137 (139)
T KOG4353|consen 85 GSQTTVLVVVSGTVKFDGNKQRVFNQTFLLTAEDP-PFKTVWKVASDCFRFQDW 137 (139)
T ss_pred cccceEEEEEeeeEEEcCCccccccceeEEeecCC-ccchhhhhhhhhhhhhhc
Confidence 25999999999999999999999999999876 665 99999999874
No 6
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.60 E-value=6.1e-15 Score=128.84 Aligned_cols=82 Identities=22% Similarity=0.332 Sum_probs=76.5
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
.+++|||+||++++++++|+++|++||.|.++.|+.+..+ +++|||||+|.+.++|++||+.+ +..|+|++|+|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 3679999999999999999999999999999999999877 88999999999999999999988 999999999999987
Q ss_pred eecc
Q 015694 379 YIIS 382 (402)
Q Consensus 379 ~~~~ 382 (402)
.+..
T Consensus 113 ~~~~ 116 (144)
T PLN03134 113 DRPS 116 (144)
T ss_pred cCCC
Confidence 6654
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.52 E-value=1.3e-13 Score=137.30 Aligned_cols=83 Identities=20% Similarity=0.250 Sum_probs=77.2
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
..++.|||+|||+++++++|+++|++||.|.+++|+.|..+ +++|||||+|.+.++|.+||..+ |..|+||+|+|.+.
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 44678999999999999999999999999999999999855 89999999999999999999999 99999999999998
Q ss_pred eeecc
Q 015694 378 VYIIS 382 (402)
Q Consensus 378 ~~~~~ 382 (402)
..+..
T Consensus 347 ~~~~~ 351 (352)
T TIGR01661 347 TNKAY 351 (352)
T ss_pred cCCCC
Confidence 77654
No 8
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.49 E-value=1.3e-13 Score=104.11 Aligned_cols=69 Identities=32% Similarity=0.406 Sum_probs=64.8
Q ss_pred EEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEE
Q 015694 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIK 373 (402)
Q Consensus 305 lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~ 373 (402)
|||+|||.++++++|+++|++||.|..+.+..+..++.+|||||+|.+.++|++|++.+ +..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999988755578999999999999999999977 9999999986
No 9
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=6.2e-14 Score=127.85 Aligned_cols=81 Identities=23% Similarity=0.227 Sum_probs=76.2
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEeee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGVY 379 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~~ 379 (402)
.-++||||+|+|.++.+.|++.|++||.|.+..|+.|+++ +++|||||+|.|.++|.+|++...-.|+||+-.+.|+..
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 3579999999999999999999999999999999999998 999999999999999999999999999999999999887
Q ss_pred ec
Q 015694 380 II 381 (402)
Q Consensus 380 ~~ 381 (402)
..
T Consensus 91 g~ 92 (247)
T KOG0149|consen 91 GG 92 (247)
T ss_pred cC
Confidence 33
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.44 E-value=8e-13 Score=131.31 Aligned_cols=83 Identities=20% Similarity=0.330 Sum_probs=77.1
Q ss_pred CCCCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEE
Q 015694 297 NEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKI 374 (402)
Q Consensus 297 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V 374 (402)
.....+++|||+|||+++++++|+++|+.||.|..++|+.|..+ +++|||||+|.+.++|++||+.+ ++.|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 44567899999999999999999999999999999999999776 88999999999999999999988 99999999999
Q ss_pred EEeee
Q 015694 375 VLGVY 379 (402)
Q Consensus 375 ~~~~~ 379 (402)
.++..
T Consensus 182 ~~a~p 186 (346)
T TIGR01659 182 SYARP 186 (346)
T ss_pred ecccc
Confidence 98765
No 11
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.43 E-value=7.3e-13 Score=131.81 Aligned_cols=80 Identities=23% Similarity=0.282 Sum_probs=74.6
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVY 379 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~ 379 (402)
.++|||+|||.++++++|+++|++||+|.+++|++++.+ +++|||||+|.+.++|.+||+.+ +..|+|++|+|.++..
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 579999999999999999999999999999999998766 88999999999999999999988 9999999999998865
Q ss_pred ec
Q 015694 380 II 381 (402)
Q Consensus 380 ~~ 381 (402)
..
T Consensus 83 ~~ 84 (352)
T TIGR01661 83 SS 84 (352)
T ss_pred cc
Confidence 43
No 12
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=1.4e-12 Score=123.81 Aligned_cols=78 Identities=21% Similarity=0.292 Sum_probs=73.6
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeeee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVYI 380 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~~ 380 (402)
.++|||.|+|+...+-||+.+|++||+|.++.|++..++ +||||||+|++.++|++|-+.+ |..|.||+|+|..+-.+
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 479999999999999999999999999999999988776 8999999999999999999999 99999999999988655
No 13
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.38 E-value=2.1e-12 Score=98.15 Aligned_cols=69 Identities=29% Similarity=0.455 Sum_probs=63.1
Q ss_pred EEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEE
Q 015694 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIK 373 (402)
Q Consensus 305 lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~ 373 (402)
|||+|||+++++++|+++|+.||.|..+.+..++++..+|+|||+|.+.++|.+|++.+ +..|+||.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999988876778999999999999999999999 6999999985
No 14
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.37 E-value=2.5e-12 Score=120.89 Aligned_cols=77 Identities=18% Similarity=0.260 Sum_probs=70.3
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEeeee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGVYI 380 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~~~ 380 (402)
.++|||+||++++++++|+++|+.||.|.++.|..++. .+|||||+|.+.+++..||...|..|+||.|+|.++-.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 57999999999999999999999999999999987764 478999999999999999975599999999999997643
No 15
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=1.2e-12 Score=108.83 Aligned_cols=78 Identities=26% Similarity=0.360 Sum_probs=73.3
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
..+++||||||++-+++++|.++|+++|.|+.+.+-+|+.+ ...|||||+|.+.++|..||+-. +..++.|.|+|.|-
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 45799999999999999999999999999999999999988 68899999999999999999998 99999999998874
No 16
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=3.6e-12 Score=111.51 Aligned_cols=74 Identities=31% Similarity=0.445 Sum_probs=66.7
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
-.++||||||+.++++.+|+.+|..||+|..+.|-. ...|||||+|++..+|..|+..| |..|.|.+|+|.+.-
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr----nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR----NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee----cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 378999999999999999999999999999976644 25899999999999999999999 999999888887753
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.32 E-value=5.9e-12 Score=132.12 Aligned_cols=80 Identities=18% Similarity=0.207 Sum_probs=75.2
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVY 379 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~ 379 (402)
.++|||+||+.++++++|+++|+.||.|.+++|..+..+ +++|||||+|.+.++|.+||+.+ +..|+|+.|+|..++.
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 579999999999999999999999999999999998776 78999999999999999999999 9999999999999886
Q ss_pred ec
Q 015694 380 II 381 (402)
Q Consensus 380 ~~ 381 (402)
..
T Consensus 284 pP 285 (612)
T TIGR01645 284 PP 285 (612)
T ss_pred Cc
Confidence 43
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.31 E-value=6e-12 Score=132.05 Aligned_cols=78 Identities=29% Similarity=0.442 Sum_probs=72.8
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
...++||||||++++++++|+++|++||.|.+++|++|+.+ +++|||||+|.+.++|++||+.+ |..|+||+|+|...
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 34689999999999999999999999999999999999776 89999999999999999999988 99999999999753
No 19
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=2.7e-11 Score=111.15 Aligned_cols=83 Identities=25% Similarity=0.356 Sum_probs=77.4
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEE
Q 015694 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIV 375 (402)
Q Consensus 298 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~ 375 (402)
...+.++|-|.||+.++++++|+++|.+||.|.++.|.+|+.+ .++|||||.|.+.++|++||..+ |+-++.-.|+|.
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 3446789999999999999999999999999999999999988 89999999999999999999999 999999999999
Q ss_pred Eeeee
Q 015694 376 LGVYI 380 (402)
Q Consensus 376 ~~~~~ 380 (402)
|+.++
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 98653
No 20
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=1.4e-11 Score=115.83 Aligned_cols=81 Identities=16% Similarity=0.262 Sum_probs=75.0
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
..-++|||+-|++++++..|+..|+.||+|+.+.|+.+..+ +++|||||+|++..++..|.+.. |++|+|++|-|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 44789999999999999999999999999999999999877 99999999999999999999988 99999999998875
Q ss_pred eee
Q 015694 378 VYI 380 (402)
Q Consensus 378 ~~~ 380 (402)
--+
T Consensus 179 RgR 181 (335)
T KOG0113|consen 179 RGR 181 (335)
T ss_pred ccc
Confidence 433
No 21
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.27 E-value=2.4e-11 Score=112.71 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=69.3
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEee
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGV 378 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~ 378 (402)
..+++|||+||++.+|+++|+++|+.||.|.++.|..+.. .+|||||+|.+.+++..||...|..|.+++|.|...-
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e--t~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE--YACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC--cceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 3578999999999999999999999999999999988743 4689999999999999999777999999998887644
No 22
>smart00362 RRM_2 RNA recognition motif.
Probab=99.25 E-value=4.3e-11 Score=89.36 Aligned_cols=70 Identities=27% Similarity=0.453 Sum_probs=64.4
Q ss_pred EEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEE
Q 015694 304 SIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKI 374 (402)
Q Consensus 304 ~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V 374 (402)
+|||+|||.+++.++|+++|.+||.+..+.+..+. +..+|+|||+|.+.+.|++|+..+ +..++|++|+|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 48999999999999999999999999998887665 557899999999999999999998 79999999886
No 23
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=5.2e-12 Score=116.96 Aligned_cols=84 Identities=31% Similarity=0.479 Sum_probs=79.3
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEE
Q 015694 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIV 375 (402)
Q Consensus 298 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~ 375 (402)
..++||+|||-+||.+..+.+|-++|-.||.|.+.+|.+|+.+ .++|||||.|++..+++.||.+| |+.|+.|||||.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 4678999999999999999999999999999999999999988 89999999999999999999999 999999999999
Q ss_pred Eeeeec
Q 015694 376 LGVYII 381 (402)
Q Consensus 376 ~~~~~~ 381 (402)
+-.+++
T Consensus 361 LKRPkd 366 (371)
T KOG0146|consen 361 LKRPKD 366 (371)
T ss_pred hcCccc
Confidence 876654
No 24
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.24 E-value=2.4e-11 Score=128.76 Aligned_cols=84 Identities=27% Similarity=0.382 Sum_probs=77.6
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
..+++|||+||+.++++++|+++|++||.|.+++++.+..++++|||||+|.+.++|.+|+..+ +..|+||+|+|.++.
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 4467899999999999999999999999999999999976789999999999999999999998 999999999999998
Q ss_pred eeccc
Q 015694 379 YIISR 383 (402)
Q Consensus 379 ~~~~~ 383 (402)
.+.-|
T Consensus 363 ~k~~~ 367 (562)
T TIGR01628 363 RKEQR 367 (562)
T ss_pred CcHHH
Confidence 76543
No 25
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.24 E-value=3.7e-11 Score=119.48 Aligned_cols=80 Identities=23% Similarity=0.293 Sum_probs=71.4
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCC--EEEEEEEe
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLS--LIIKIVLG 377 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~G--r~i~V~~~ 377 (402)
.++|||+|||.++++++|+++|++||.|..+.|+.++.+ +.+|||||+|.+.++|++||+.+ +..|.| ++|+|.++
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 468999999999999999999999999999999988766 78999999999999999999999 777765 68888887
Q ss_pred eeec
Q 015694 378 VYII 381 (402)
Q Consensus 378 ~~~~ 381 (402)
-...
T Consensus 273 ~~~~ 276 (346)
T TIGR01659 273 EEHG 276 (346)
T ss_pred Cccc
Confidence 6543
No 26
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.22 E-value=3.6e-11 Score=127.41 Aligned_cols=77 Identities=29% Similarity=0.386 Sum_probs=72.0
Q ss_pred EEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeeee
Q 015694 304 SIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVYI 380 (402)
Q Consensus 304 ~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~~ 380 (402)
+|||||||.++|+++|+++|++||.|.+++|.+|..+ +++|||||+|.+.++|++||+.+ +..|+||.|+|.|....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 7999999999999999999999999999999999886 88999999999999999999998 77799999999987543
No 27
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.22 E-value=1.4e-10 Score=121.25 Aligned_cols=80 Identities=15% Similarity=0.216 Sum_probs=74.1
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
..++|||+|||..+++++|+++|+.||.|..+.|+.+..+ .++|||||+|.+.++|..||+.+ |..|+|+.|+|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 4679999999999999999999999999999999888765 78999999999999999999998 999999999999986
Q ss_pred ee
Q 015694 379 YI 380 (402)
Q Consensus 379 ~~ 380 (402)
..
T Consensus 374 ~~ 375 (509)
T TIGR01642 374 VG 375 (509)
T ss_pred cC
Confidence 44
No 28
>PLN03213 repressor of silencing 3; Provisional
Probab=99.22 E-value=4e-11 Score=119.15 Aligned_cols=76 Identities=14% Similarity=0.239 Sum_probs=68.7
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCH--HHHHHHHHhC-CCccCCEEEEEEE
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETP--GSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~--~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
..+.+||||||++++++++|+..|+.||.|.++.|++. + +||||||+|... .++.+||..+ |..++||.|+|..
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--T-GRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--K-GRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--c-CCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 34689999999999999999999999999999999832 2 499999999987 7899999999 9999999999998
Q ss_pred ee
Q 015694 377 GV 378 (402)
Q Consensus 377 ~~ 378 (402)
|.
T Consensus 85 AK 86 (759)
T PLN03213 85 AK 86 (759)
T ss_pred cc
Confidence 74
No 29
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.20 E-value=6.2e-11 Score=124.19 Aligned_cols=77 Identities=21% Similarity=0.365 Sum_probs=70.4
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccC-CEEEEEEEee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISL-SLIIKIVLGV 378 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~-Gr~i~V~~~~ 378 (402)
+++|||+|||.++++++|+++|++||.|..++|++|..++++|||||+|.+.++|++||+.+ +..|. |+.|.|.+.+
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 68999999999999999999999999999999999966689999999999999999999999 77774 7888777654
No 30
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=2.6e-11 Score=106.96 Aligned_cols=77 Identities=23% Similarity=0.262 Sum_probs=69.1
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeeee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVYI 380 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~~ 380 (402)
.++|||||||.++.+.+|+++|.+||.|..+.+.... ...+||||+|++..+|+.||... +..++|.+|+|.+.--.
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 6899999999999999999999999999998774332 35899999999999999999999 99999999999987544
No 31
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=3.1e-12 Score=112.45 Aligned_cols=86 Identities=19% Similarity=0.261 Sum_probs=79.9
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEE
Q 015694 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIV 375 (402)
Q Consensus 298 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~ 375 (402)
.+.++.-|||||||++.|+.+|--+|++||.|..+.+++|+.+ +++||||+.|+|..+.--|+..+ |+.|.||.|+|.
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 5677889999999999999999999999999999999999988 99999999999999999999999 999999999998
Q ss_pred Eeeeeccc
Q 015694 376 LGVYIISR 383 (402)
Q Consensus 376 ~~~~~~~~ 383 (402)
.-..+..+
T Consensus 111 Hv~~Yk~p 118 (219)
T KOG0126|consen 111 HVSNYKKP 118 (219)
T ss_pred ecccccCC
Confidence 87666554
No 32
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=1.5e-10 Score=93.13 Aligned_cols=75 Identities=21% Similarity=0.282 Sum_probs=67.1
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
.++-|||+|||+++|.++..++|++||.|+.++|-..+. .+|-|||.|++..+|.+|+..+ |..+.++.+.|.+.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~--TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE--TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC--cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 367899999999999999999999999999988855444 4889999999999999999999 99999999887654
No 33
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.19 E-value=2.1e-11 Score=107.40 Aligned_cols=98 Identities=20% Similarity=0.195 Sum_probs=86.7
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
...+||||||+..++++.|.++|-+.|+|..+++..|+.+ ..+||||++|.++++|+-|++.+ .+.+-||+|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 3679999999999999999999999999999999988887 68999999999999999999999 999999999999999
Q ss_pred eecccceEE----Eeeec-cccccc
Q 015694 379 YIISRTFIE----VQILV-EPLECA 398 (402)
Q Consensus 379 ~~~~~~~~~----~~~~~-~~~~~~ 398 (402)
...+.+.+. +++|+ +=|+..
T Consensus 88 ~~~~nl~vganlfvgNLd~~vDe~~ 112 (203)
T KOG0131|consen 88 AHQKNLDVGANLFVGNLDPEVDEKL 112 (203)
T ss_pred cccccccccccccccccCcchhHHH
Confidence 777777777 66665 334433
No 34
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=7.2e-11 Score=109.75 Aligned_cols=80 Identities=24% Similarity=0.312 Sum_probs=73.3
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 298 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
..+++|+||+||++.-+++++||+.|+.||.|.+++|..+ +||+||.|++.++|.+||..+ +..|+|..+++.|
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 3567899999999999999999999999999999999754 689999999999999999999 9999999999999
Q ss_pred eeeecc
Q 015694 377 GVYIIS 382 (402)
Q Consensus 377 ~~~~~~ 382 (402)
|.-.+.
T Consensus 235 GKe~~~ 240 (321)
T KOG0148|consen 235 GKEGDD 240 (321)
T ss_pred cccCCC
Confidence 976544
No 35
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.17 E-value=1.1e-10 Score=120.38 Aligned_cols=77 Identities=29% Similarity=0.431 Sum_probs=73.4
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
.++|||+||+.++++++|+++|++||.|..+.+..+..+ +++|||||+|.+.++|.+|+..+ |..|+|+.|+|.++.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 689999999999999999999999999999999998877 88999999999999999999988 999999999999976
No 36
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.17 E-value=2.8e-11 Score=108.47 Aligned_cols=81 Identities=20% Similarity=0.323 Sum_probs=76.6
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVY 379 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~ 379 (402)
-..|-|-||.+.++.++|+.+|++||.|-++.|..|..+ ..+|||||-|.+..+|+.|+++| |.+|+|+.|.|+++-|
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 468999999999999999999999999999999999888 89999999999999999999999 9999999999999988
Q ss_pred ecc
Q 015694 380 IIS 382 (402)
Q Consensus 380 ~~~ 382 (402)
..-
T Consensus 93 gr~ 95 (256)
T KOG4207|consen 93 GRP 95 (256)
T ss_pred CCC
Confidence 654
No 37
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.17 E-value=2.3e-10 Score=85.77 Aligned_cols=73 Identities=25% Similarity=0.385 Sum_probs=66.9
Q ss_pred EEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 304 SIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 304 ~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
+|||+|||..+++++|+++|+.||.|..+.+..+..+..+|+|||+|.+.++|..|++.+ +..++|++|+|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999887766667899999999999999999999 8889999998863
No 38
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=5.2e-11 Score=110.68 Aligned_cols=96 Identities=23% Similarity=0.278 Sum_probs=84.3
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVY 379 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~ 379 (402)
-..+||+.|...++.++||+.|.+||+|.+++|++|.++ +++|||||.|.+.++|++||..| |..|++|.|+-.|+-.
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 468999999999999999999999999999999999998 99999999999999999999999 9999999999999988
Q ss_pred eccc------ceEEEeeecccccc
Q 015694 380 IISR------TFIEVQILVEPLEC 397 (402)
Q Consensus 380 ~~~~------~~~~~~~~~~~~~~ 397 (402)
+.++ ++=||.+---|+-|
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~Nt 165 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNT 165 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCc
Confidence 8754 33344444445544
No 39
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.16 E-value=1.6e-10 Score=119.23 Aligned_cols=80 Identities=21% Similarity=0.259 Sum_probs=73.6
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEe
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLG 377 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~ 377 (402)
+.+.++|||+|||.++++++|+++|++||.|..+.|+.++.+ +++|||||+|.+.++|.+||...+..|.|+.|.|.+.
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 445789999999999999999999999999999999998776 7899999999999999999987799999999998875
Q ss_pred e
Q 015694 378 V 378 (402)
Q Consensus 378 ~ 378 (402)
.
T Consensus 166 ~ 166 (457)
T TIGR01622 166 Q 166 (457)
T ss_pred c
Confidence 3
No 40
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=1.7e-10 Score=113.69 Aligned_cols=86 Identities=22% Similarity=0.350 Sum_probs=77.4
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCcc-CCEEEEEEE
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLIS-LSLIIKIVL 376 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i-~Gr~i~V~~ 376 (402)
+.+|-||||.||.++.|++|..+|++.|+|-.++|++|+.+ .++|||||.|.+.+.|++||+.+ ++.| .||.|.|.+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 34899999999999999999999999999999999999666 89999999999999999999999 7766 689999998
Q ss_pred eeeecccceE
Q 015694 377 GVYIISRTFI 386 (402)
Q Consensus 377 ~~~~~~~~~~ 386 (402)
.+.. +|+||
T Consensus 161 Svan-~RLFi 169 (506)
T KOG0117|consen 161 SVAN-CRLFI 169 (506)
T ss_pred eeec-ceeEe
Confidence 8753 56665
No 41
>smart00360 RRM RNA recognition motif.
Probab=99.15 E-value=2e-10 Score=85.23 Aligned_cols=69 Identities=30% Similarity=0.367 Sum_probs=62.8
Q ss_pred EccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEE
Q 015694 307 VRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIV 375 (402)
Q Consensus 307 VgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~ 375 (402)
|+|||..+++++|+++|++||.|..+.+..+..+ ..+|||||+|.+.++|.+|+..+ +..++|++|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5799999999999999999999999988877653 78899999999999999999999 799999998873
No 42
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.15 E-value=1.7e-10 Score=108.07 Aligned_cols=78 Identities=27% Similarity=0.422 Sum_probs=73.3
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVY 379 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~ 379 (402)
.++|||+||+.++++++|+++|.+||.|..+.+..++.+ +.+|||||+|.+.+++..|++.+ +..|.|++|+|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 689999999999999999999999999999999999744 89999999999999999999999 8999999999999653
No 43
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=3.2e-11 Score=115.96 Aligned_cols=74 Identities=30% Similarity=0.484 Sum_probs=71.6
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEE
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIV 375 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~ 375 (402)
-|++|||.+.+.+.++.||..|..||+|+++.+.+|..+ +++||+||+|+-++.|+-|++.| |.+++||.|+|.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 489999999999999999999999999999999999888 99999999999999999999999 999999999987
No 44
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=1.5e-10 Score=116.46 Aligned_cols=84 Identities=30% Similarity=0.428 Sum_probs=77.6
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC------C-CccCCE
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL------S-LISLSL 370 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~------~-~~i~Gr 370 (402)
...+.+|||+|||+++|+++|.+.|++||.|.++.|++++.+ +++|.|||.|.+...+++||.+. + +.|.||
T Consensus 289 ~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR 368 (678)
T KOG0127|consen 289 ITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGR 368 (678)
T ss_pred ccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEecc
Confidence 456799999999999999999999999999999999999998 89999999999999999999875 3 789999
Q ss_pred EEEEEEeeeecc
Q 015694 371 IIKIVLGVYIIS 382 (402)
Q Consensus 371 ~i~V~~~~~~~~ 382 (402)
.|+|.+++.+.-
T Consensus 369 ~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 369 LLKVTLAVTRKE 380 (678)
T ss_pred EEeeeeccchHH
Confidence 999999998753
No 45
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=9.3e-11 Score=105.99 Aligned_cols=82 Identities=26% Similarity=0.324 Sum_probs=76.9
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
..++||||+|..++++.-|...|-.||.|+.+.+.+|..+ ++||||||+|+..++|..||..| ...|.||.|+|.++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 3589999999999999999999999999999999999877 89999999999999999999999 999999999999998
Q ss_pred eecc
Q 015694 379 YIIS 382 (402)
Q Consensus 379 ~~~~ 382 (402)
+...
T Consensus 89 P~ki 92 (298)
T KOG0111|consen 89 PEKI 92 (298)
T ss_pred Cccc
Confidence 7544
No 46
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.07 E-value=6.2e-10 Score=115.85 Aligned_cols=77 Identities=14% Similarity=0.187 Sum_probs=69.9
Q ss_pred CCCCcEEEEccCCC-CCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 299 EAEGCSIYVRNLAF-TTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 299 ~~~~~~lfVgnLp~-~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
.+.++.|||+||+. .+++++|+++|+.||.|.+++++.+ .+|||||+|.+.++|..||..| +..|.|++|+|.+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 34578999999998 6999999999999999999998876 3689999999999999999998 9999999999998
Q ss_pred eee
Q 015694 377 GVY 379 (402)
Q Consensus 377 ~~~ 379 (402)
+..
T Consensus 348 s~~ 350 (481)
T TIGR01649 348 SKQ 350 (481)
T ss_pred ccc
Confidence 744
No 47
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=3.8e-10 Score=94.87 Aligned_cols=86 Identities=19% Similarity=0.256 Sum_probs=79.9
Q ss_pred CCCCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEE
Q 015694 297 NEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKI 374 (402)
Q Consensus 297 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V 374 (402)
++..++..|||.++...+++++|.+.|..||.|+.+.+.+|+.+ ..+||+.|+|++...|++|+..+ +..|.|..|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 34567899999999999999999999999999999999999888 78999999999999999999999 89999999999
Q ss_pred EEeeeecc
Q 015694 375 VLGVYIIS 382 (402)
Q Consensus 375 ~~~~~~~~ 382 (402)
.|.+-...
T Consensus 147 Dw~Fv~gp 154 (170)
T KOG0130|consen 147 DWCFVKGP 154 (170)
T ss_pred EEEEecCC
Confidence 99986654
No 48
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.05 E-value=7.5e-10 Score=116.15 Aligned_cols=75 Identities=27% Similarity=0.319 Sum_probs=68.4
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcC--CCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIF--GPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~f--G~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
.++|||+||+.++++++|+++|++| |.|.++.++ ++||||+|.+.++|.+||+.+ +..|+|+.|+|.++.
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 4789999999999999999999999 999988663 569999999999999999988 999999999999997
Q ss_pred eeccc
Q 015694 379 YIISR 383 (402)
Q Consensus 379 ~~~~~ 383 (402)
+....
T Consensus 306 p~~~~ 310 (578)
T TIGR01648 306 PVDKK 310 (578)
T ss_pred CCCcc
Confidence 76554
No 49
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.05 E-value=1.2e-09 Score=101.23 Aligned_cols=81 Identities=22% Similarity=0.276 Sum_probs=75.8
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
..+.|.|.-||.++|.++||.+|+..|+|.+|++++|+.+ ++-|||||.|.++.+|++|+..+ |+.+..|.|||+++.
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 3578999999999999999999999999999999999988 89999999999999999999999 999999999999986
Q ss_pred eec
Q 015694 379 YII 381 (402)
Q Consensus 379 ~~~ 381 (402)
+..
T Consensus 120 PSs 122 (360)
T KOG0145|consen 120 PSS 122 (360)
T ss_pred CCh
Confidence 643
No 50
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=4.7e-10 Score=112.99 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=76.1
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeeee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVYI 380 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~~ 380 (402)
..+|.|+||||.+...+|+.+|++||.+..+.|.....++.+|||||.|.+..+|..||+.+ +++|+||+|-|.||+..
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 67999999999999999999999999999999987777777899999999999999999999 99999999999999987
Q ss_pred cc
Q 015694 381 IS 382 (402)
Q Consensus 381 ~~ 382 (402)
..
T Consensus 197 d~ 198 (678)
T KOG0127|consen 197 DT 198 (678)
T ss_pred cc
Confidence 53
No 51
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.04 E-value=7.1e-10 Score=115.38 Aligned_cols=73 Identities=21% Similarity=0.204 Sum_probs=66.3
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC---CCccCCEEEEEEEee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL---SLISLSLIIKIVLGV 378 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~---~~~i~Gr~i~V~~~~ 378 (402)
++.|||||||+++++++|+++|++||.|.++.|+. .+|||||+|.+.++|++||+.+ ++.|+|+.|+|.++.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYST 76 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecC
Confidence 57899999999999999999999999999998863 4689999999999999999863 789999999999975
Q ss_pred e
Q 015694 379 Y 379 (402)
Q Consensus 379 ~ 379 (402)
.
T Consensus 77 ~ 77 (481)
T TIGR01649 77 S 77 (481)
T ss_pred C
Confidence 3
No 52
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.03 E-value=6.8e-10 Score=112.42 Aligned_cols=81 Identities=16% Similarity=0.252 Sum_probs=78.0
Q ss_pred cEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeeee
Q 015694 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVYI 380 (402)
Q Consensus 303 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~~ 380 (402)
+.+||||+|+++++++|..+|+..|.|.+++++.|+.+ +.+||||++|.+.+.+.+|++.+ +..++||+|+|.++.-.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999988 89999999999999999999999 99999999999999887
Q ss_pred ccc
Q 015694 381 ISR 383 (402)
Q Consensus 381 ~~~ 383 (402)
..+
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 775
No 53
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=3.1e-09 Score=104.55 Aligned_cols=86 Identities=15% Similarity=0.210 Sum_probs=72.9
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC--CCccCC--EEE
Q 015694 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL--SLISLS--LII 372 (402)
Q Consensus 298 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~--~~~i~G--r~i 372 (402)
.+.+.-++|||.+|..++|.|||++|++||.|.+|.|++|+.+ .++|||||.|.+.+++.+|+.++ -..|-| .+|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 3466789999999999999999999999999999999999988 89999999999999999999998 455655 466
Q ss_pred EEEEeeeeccc
Q 015694 373 KIVLGVYIISR 383 (402)
Q Consensus 373 ~V~~~~~~~~~ 383 (402)
.|.++=-...|
T Consensus 110 qvk~Ad~E~er 120 (510)
T KOG0144|consen 110 QVKYADGERER 120 (510)
T ss_pred eecccchhhhc
Confidence 66666544443
No 54
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=4.9e-09 Score=97.09 Aligned_cols=77 Identities=21% Similarity=0.268 Sum_probs=73.0
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
.++.|||-||..+.++.-|+++|+.||.|..++|++|-++ +.+|||||.+.+-+.|..||..+ |..+++|.|.|++-
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 3789999999999999999999999999999999999887 89999999999999999999999 99999999998864
No 55
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.92 E-value=5.1e-09 Score=76.15 Aligned_cols=55 Identities=27% Similarity=0.341 Sum_probs=47.9
Q ss_pred HHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 319 LEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 319 L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
|+++|++||.|..+.+..+. +++|||+|.+.++|.+|++.+ +..++|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999998774332 589999999999999999988 99999999999885
No 56
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.92 E-value=1.6e-09 Score=109.54 Aligned_cols=81 Identities=27% Similarity=0.380 Sum_probs=74.6
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcC-CCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRS-NKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVY 379 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~-~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~ 379 (402)
..+||||||.+++++++|+.+|+.||.|..+.+.+|. .++++|||||+|.+.++|.+|++.+ |+.|-||.|+|.+..+
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 4459999999999999999999999999999999997 4489999999999999999999999 9999999999998877
Q ss_pred ecc
Q 015694 380 IIS 382 (402)
Q Consensus 380 ~~~ 382 (402)
+--
T Consensus 358 r~~ 360 (549)
T KOG0147|consen 358 RVD 360 (549)
T ss_pred ecc
Confidence 654
No 57
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=3.3e-09 Score=104.76 Aligned_cols=76 Identities=22% Similarity=0.263 Sum_probs=69.8
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeeee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVYI 380 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~~ 380 (402)
-+.|||+||+.++|++.|+++|++||.|.++... +-||||.|.+.++|.+|++.+ +..|+|..|.|.|+.+.
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-------rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-------RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecc-------cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCCh
Confidence 5789999999999999999999999999987664 339999999999999999999 99999999999999988
Q ss_pred cccc
Q 015694 381 ISRT 384 (402)
Q Consensus 381 ~~~~ 384 (402)
+.+.
T Consensus 332 ~k~k 335 (506)
T KOG0117|consen 332 DKKK 335 (506)
T ss_pred hhhc
Confidence 7763
No 58
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.86 E-value=3.6e-09 Score=93.40 Aligned_cols=83 Identities=16% Similarity=0.258 Sum_probs=75.6
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEE-EEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKN-GVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~-~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
-+.++|||||...+++..|.+.|+.||.|... .++++.++ ..+|||||.|.+.+.+.+|+..+ +..++.|+|.|.++
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 35899999999999999999999999998653 67778776 78999999999999999999999 99999999999999
Q ss_pred eeeccc
Q 015694 378 VYIISR 383 (402)
Q Consensus 378 ~~~~~~ 383 (402)
.++..+
T Consensus 175 ~k~~~k 180 (203)
T KOG0131|consen 175 FKKDTK 180 (203)
T ss_pred EecCCC
Confidence 998875
No 59
>smart00361 RRM_1 RNA recognition motif.
Probab=98.86 E-value=1e-08 Score=78.27 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=52.0
Q ss_pred HHHHHHHhh----cCCCeeEEE-EEEcCC---CCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEE
Q 015694 316 STELEEAFK----IFGPIKKNG-VQVRSN---KQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKI 374 (402)
Q Consensus 316 e~~L~~~F~----~fG~I~~~~-v~~~~~---~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V 374 (402)
+++|+++|+ +||.|.++. |.+++. ++++|||||+|.+.++|.+|++.+ |..++||.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578889998 999999985 666654 367999999999999999999999 99999999976
No 60
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=4.5e-09 Score=101.04 Aligned_cols=77 Identities=22% Similarity=0.288 Sum_probs=72.6
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
+.+.|||..|++-+++++|+-+|+.||.|..|.|++|..+ .+-+||||+|++.+++++|.-.| .+.|+.|+|+|.+.
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 3578999999999999999999999999999999999887 78899999999999999999999 99999999999875
No 61
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.78 E-value=4.8e-09 Score=102.06 Aligned_cols=83 Identities=24% Similarity=0.334 Sum_probs=78.6
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEeee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGVY 379 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~~ 379 (402)
+.++||||+|+++++++.|++.|++||.|..+.++.|..+ +++||+||+|.+.+.+.++|....+.|+||.|.+.-++.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 6799999999999999999999999999999999999888 899999999999999999999999999999999999998
Q ss_pred eccc
Q 015694 380 IISR 383 (402)
Q Consensus 380 ~~~~ 383 (402)
+.-+
T Consensus 85 r~~~ 88 (311)
T KOG4205|consen 85 REDQ 88 (311)
T ss_pred cccc
Confidence 8744
No 62
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=1e-08 Score=100.89 Aligned_cols=86 Identities=24% Similarity=0.372 Sum_probs=79.7
Q ss_pred CCCCCCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEE
Q 015694 295 NVNEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLII 372 (402)
Q Consensus 295 ~~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i 372 (402)
...+.++|..+||.+||.+.-+.+|-..|..||.|.+.++..|+.+ .++|||||.|++..++..||..| |..|+++++
T Consensus 417 ~q~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~Krl 496 (510)
T KOG0144|consen 417 GQVEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRL 496 (510)
T ss_pred ccccCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccc
Confidence 3456788999999999999999999999999999999999999888 78999999999999999999999 999999999
Q ss_pred EEEEeeee
Q 015694 373 KIVLGVYI 380 (402)
Q Consensus 373 ~V~~~~~~ 380 (402)
+|.+-..+
T Consensus 497 kVQlk~~~ 504 (510)
T KOG0144|consen 497 KVQLKRDR 504 (510)
T ss_pred eEEeeecc
Confidence 99886654
No 63
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=1.9e-08 Score=100.90 Aligned_cols=77 Identities=26% Similarity=0.338 Sum_probs=73.3
Q ss_pred EEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeeeeccc
Q 015694 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVYIISR 383 (402)
Q Consensus 305 lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~~~~~ 383 (402)
+||+||+.+++...|.++|+.||.|.+|+|..+.++ ++|| ||+|+++++|++|++.+ |..++|++|.|.+..++..|
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 999999999999999999999999999999999888 8999 99999999999999999 99999999999888877665
No 64
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.70 E-value=1.8e-08 Score=94.79 Aligned_cols=71 Identities=20% Similarity=0.332 Sum_probs=65.9
Q ss_pred cEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeeee
Q 015694 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVYI 380 (402)
Q Consensus 303 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~~ 380 (402)
.+|||||||.++++.+|+.+|++||+|.+|.|+ +.||||..++...+..||+.+ +..|+|..|+|.-+.-+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-------cccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 479999999999999999999999999999996 459999999999999999999 99999999999877655
No 65
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.67 E-value=4.7e-08 Score=102.20 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=59.4
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcC------------CCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCc
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIF------------GPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLI 366 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~f------------G~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~ 366 (402)
....++|||||||+++|+++|+++|.+| +.|..+.+ .+.+|||||+|.+.++|..||...|+.
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-----~~~kg~afVeF~~~e~A~~Al~l~g~~ 246 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-----NKEKNFAFLEFRTVEEATFAMALDSII 246 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-----CCCCCEEEEEeCCHHHHhhhhcCCCeE
Confidence 3456899999999999999999999975 23333222 246799999999999999999644999
Q ss_pred cCCEEEEEEE
Q 015694 367 SLSLIIKIVL 376 (402)
Q Consensus 367 i~Gr~i~V~~ 376 (402)
|+|+.|+|..
T Consensus 247 ~~g~~l~v~r 256 (509)
T TIGR01642 247 YSNVFLKIRR 256 (509)
T ss_pred eeCceeEecC
Confidence 9999999864
No 66
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.66 E-value=6.4e-08 Score=100.61 Aligned_cols=76 Identities=28% Similarity=0.468 Sum_probs=69.6
Q ss_pred cEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC----CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK----QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 303 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~----~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
++|||+||+++.+.++|+..|...|.|.++.|...++. .+.|||||+|.+.++|++|++.| |..|+|+.|.|.+.
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 34999999999999999999999999999988776655 35599999999999999999999 89999999999998
Q ss_pred e
Q 015694 378 V 378 (402)
Q Consensus 378 ~ 378 (402)
-
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 7
No 67
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.65 E-value=3.8e-08 Score=95.81 Aligned_cols=87 Identities=17% Similarity=0.177 Sum_probs=81.1
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEeee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGVY 379 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~~ 379 (402)
...+||||+|+.++++.++++.|.+||.|..+.+++|..+ +.+|||||.|.+++++.+++....+.|+|+.++|..+++
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 5679999999999999999999999999999999999888 899999999999999999999889999999999999999
Q ss_pred ecccceEE
Q 015694 380 IISRTFIE 387 (402)
Q Consensus 380 ~~~~~~~~ 387 (402)
+.......
T Consensus 176 k~~~~~~~ 183 (311)
T KOG4205|consen 176 KEVMQSTK 183 (311)
T ss_pred hhhccccc
Confidence 98765443
No 68
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.65 E-value=5.4e-08 Score=101.84 Aligned_cols=78 Identities=19% Similarity=0.228 Sum_probs=72.2
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeeee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVYI 380 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~~ 380 (402)
+++||||+|+.++++.+|..+|+.||.|.++.++- .+|+|||.+....+|.+||.+| .+.+.++.|+|.||+-.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 57999999999999999999999999999987642 5788999999999999999999 99999999999999988
Q ss_pred cccc
Q 015694 381 ISRT 384 (402)
Q Consensus 381 ~~~~ 384 (402)
..|+
T Consensus 496 G~ks 499 (894)
T KOG0132|consen 496 GPKS 499 (894)
T ss_pred Ccch
Confidence 8876
No 69
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.65 E-value=6.9e-08 Score=95.25 Aligned_cols=75 Identities=17% Similarity=0.258 Sum_probs=70.7
Q ss_pred CcEEEEccCCCCCCHHHHHHHhh-cCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFK-IFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~-~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
.+.+||.|+|+++...+|+++|. +-|.|.+|.++.|..++.+|+|.|+|++++.+++|++.+ .+.++||.|+|.-
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 46799999999999999999996 789999999999999999999999999999999999999 9999999998864
No 70
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.63 E-value=8e-08 Score=92.54 Aligned_cols=74 Identities=22% Similarity=0.293 Sum_probs=67.5
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC--CCccCCEEEEEEEee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL--SLISLSLIIKIVLGV 378 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~--~~~i~Gr~i~V~~~~ 378 (402)
...+||||+|...+++.+|++.|.+||.|+.+.+..+ +++|||+|.+..+|+.|...+ .+.|+|++|+|.||.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 3679999999999999999999999999999888654 457999999999999999888 789999999999998
Q ss_pred e
Q 015694 379 Y 379 (402)
Q Consensus 379 ~ 379 (402)
.
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 8
No 71
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.61 E-value=1.1e-07 Score=86.88 Aligned_cols=78 Identities=21% Similarity=0.238 Sum_probs=68.3
Q ss_pred CcEEEEccCCCCCCHHHHHH----HhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 302 GCSIYVRNLAFTTTSTELEE----AFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~----~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
+.+|||.||+..+..++|+. +|++||.|..+.. .+..+.+|-|||.|.+.+.|-.|++++ |.-+-||.|+|.+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a--~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISA--FKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEe--cCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 44999999999999999988 9999999988644 333378999999999999999999999 9999999999999
Q ss_pred eeeec
Q 015694 377 GVYII 381 (402)
Q Consensus 377 ~~~~~ 381 (402)
+-...
T Consensus 87 A~s~s 91 (221)
T KOG4206|consen 87 AKSDS 91 (221)
T ss_pred ccCcc
Confidence 86443
No 72
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.57 E-value=7.2e-08 Score=90.84 Aligned_cols=73 Identities=21% Similarity=0.299 Sum_probs=67.3
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVY 379 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~ 379 (402)
..++|+||||.+.++..+|+..|.+||++..++|+ ++|+||.|+-.++|..|++.+ +..|.|++|+|.+.--
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeee-------cceeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 36799999999999999999999999999999985 569999999999999999999 9999999999998654
Q ss_pred e
Q 015694 380 I 380 (402)
Q Consensus 380 ~ 380 (402)
+
T Consensus 150 r 150 (346)
T KOG0109|consen 150 R 150 (346)
T ss_pred c
Confidence 3
No 73
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.56 E-value=3.7e-07 Score=92.61 Aligned_cols=81 Identities=22% Similarity=0.373 Sum_probs=73.1
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
..-+++|||.+|...+...+|+.+|++||.|.-..|+....+ ..+|||||++.+.+.|.+||..+ ...|.||.|.|.-
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 445789999999999999999999999999998888877666 67999999999999999999999 9999999999987
Q ss_pred eee
Q 015694 377 GVY 379 (402)
Q Consensus 377 ~~~ 379 (402)
+..
T Consensus 482 aKN 484 (940)
T KOG4661|consen 482 AKN 484 (940)
T ss_pred ccc
Confidence 654
No 74
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.55 E-value=1.3e-07 Score=91.36 Aligned_cols=80 Identities=18% Similarity=0.223 Sum_probs=73.3
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
.-.+|||..+..+.+++||+..|+.||+|.+|.+-++..+ .++||||++|.+..+...||..| -+.++|.-|+|.-.+
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 3579999999999999999999999999999999988877 79999999999999999999999 789999999987666
Q ss_pred ee
Q 015694 379 YI 380 (402)
Q Consensus 379 ~~ 380 (402)
..
T Consensus 289 TP 290 (544)
T KOG0124|consen 289 TP 290 (544)
T ss_pred CC
Confidence 54
No 75
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.54 E-value=5e-08 Score=101.41 Aligned_cols=78 Identities=29% Similarity=0.445 Sum_probs=71.6
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVY 379 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~ 379 (402)
+++|+|+|||+.++..+++.+|..||.|++++|...... .++|||||+|-++..|.+|+.++ ...+.||+|.+.|+--
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 789999999999999999999999999999999777333 67999999999999999999999 8899999999998754
No 76
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=2.2e-07 Score=93.16 Aligned_cols=83 Identities=22% Similarity=0.260 Sum_probs=76.1
Q ss_pred cEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeeeec
Q 015694 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVYII 381 (402)
Q Consensus 303 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~~~ 381 (402)
..|||| .++|+.+|.++|+.+|++.+++|-+|. + +-|||||.|.++.+|.+||..+ ...|.|++|+|+|.-.-+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 468998 999999999999999999999999999 8 9999999999999999999999 778999999999988877
Q ss_pred ccceEEEeeec
Q 015694 382 SRTFIEVQILV 392 (402)
Q Consensus 382 ~~~~~~~~~~~ 392 (402)
+. |-+.+|+
T Consensus 77 ~~--~~i~nl~ 85 (369)
T KOG0123|consen 77 SL--VFIKNLD 85 (369)
T ss_pred ce--eeecCCC
Confidence 76 6777665
No 77
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.46 E-value=4.2e-07 Score=82.01 Aligned_cols=79 Identities=16% Similarity=0.277 Sum_probs=68.7
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcC-CCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIF-GPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~f-G~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
..-+|++.+|+...+.++..+|.+| |.+..+++.+.+.+ .++|||||+|++.+.|.-|-+.| +..|.|+.|.+.+=.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 4578999999999999999999998 77777777666555 89999999999999999999999 899999998887655
Q ss_pred ee
Q 015694 379 YI 380 (402)
Q Consensus 379 ~~ 380 (402)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 54
No 78
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.40 E-value=8.7e-07 Score=92.15 Aligned_cols=81 Identities=25% Similarity=0.400 Sum_probs=73.6
Q ss_pred CCCCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC----CcccEEEEEeCCHHHHHHHHHhC-CCccCCEE
Q 015694 297 NEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK----QGYCFGFVAFETPGSVQSALEVL-SLISLSLI 371 (402)
Q Consensus 297 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~----~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~ 371 (402)
..++..+++||+||++.++++.|-..|++||+|..++|++-+.- +.+.+|||-|-+..++++|++.+ |+++.++.
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 34677899999999999999999999999999999999886543 45667999999999999999999 99999999
Q ss_pred EEEEEe
Q 015694 372 IKIVLG 377 (402)
Q Consensus 372 i~V~~~ 377 (402)
+++.||
T Consensus 249 ~K~gWg 254 (877)
T KOG0151|consen 249 MKLGWG 254 (877)
T ss_pred eeeccc
Confidence 999999
No 79
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.40 E-value=5.6e-07 Score=83.95 Aligned_cols=85 Identities=18% Similarity=0.236 Sum_probs=72.0
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-C-CccCC--EEEEEE
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-S-LISLS--LIIKIV 375 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~-~~i~G--r~i~V~ 375 (402)
.+.++||||-|...-+|+|++.+|..||.|.+|.+.+..++.++|++||.|.+..+++.||..+ | ..+-| ..|.|.
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 3578999999999999999999999999999999998888889999999999999999999998 3 34444 456676
Q ss_pred Eeeeecccc
Q 015694 376 LGVYIISRT 384 (402)
Q Consensus 376 ~~~~~~~~~ 384 (402)
++-...-|.
T Consensus 97 ~ADTdkER~ 105 (371)
T KOG0146|consen 97 FADTDKERT 105 (371)
T ss_pred eccchHHHH
Confidence 666555543
No 80
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=98.38 E-value=5e-06 Score=68.09 Aligned_cols=115 Identities=26% Similarity=0.386 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCCC--CcceEEEeeeEeeeeCC-CcEE
Q 015694 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNY--EDYTAEIKTADAQDSYE-KGVI 92 (402)
Q Consensus 17 ~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~--~~~~~~I~~~d~q~s~~-~~vl 92 (402)
..|+.+||..|+ .+++.|..||.+++.+.+.+.+.......|.++|.+.+..+.. ...++-+.+++.+...+ ...+
T Consensus 2 ~~l~~~y~~~ld~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~ 81 (124)
T cd00531 2 EQFLYRYARLLDAGDREWLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPFGPSRTRHLVSNVDVQPGDDGEGVV 81 (124)
T ss_pred HHHHHHHHHHhCCchHHHHHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhcCCCCCceEEEEEeEEEEeCCCCEEEE
Confidence 579999999999 7888999999999999887642112256799999999988763 34455578888888654 3466
Q ss_pred EEEEEEEEeCC---CcccceeEEEEeeEcCCCcEEEEeceEEe
Q 015694 93 VLVTGCLTGKD---NVKKKFTQTFFLAPQDKGGYFVLNDVFRF 132 (402)
Q Consensus 93 v~V~G~l~~~~---~~~r~F~qtF~L~~~~~~~y~V~nDifr~ 132 (402)
+.+.+.+.... ...+.|.+.|.+...++ +|.|.+..++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~w~i~~~~~~~ 123 (124)
T cd00531 82 VSVFGVLRTRGDGEQDVFAGGQTFVLRPQGG-GGKIANRRFRL 123 (124)
T ss_pred EEEEEEEEEccCCceeEEEEEEEEEEEEeCC-EEEEEEEEEec
Confidence 77778887665 45688999999998854 99999999886
No 81
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.37 E-value=1.2e-06 Score=82.35 Aligned_cols=79 Identities=19% Similarity=0.237 Sum_probs=73.5
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeeee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVYI 380 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~~ 380 (402)
.++|+|.||++.+++++|+++|..||.++.+-|.++..+++.|.|-|.|...++|.+|++.+ ++.++|+.|++.+....
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 47899999999999999999999999999999999999989999999999999999999999 99999999988776543
No 82
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.30 E-value=1.3e-06 Score=86.36 Aligned_cols=74 Identities=23% Similarity=0.321 Sum_probs=65.2
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
....|+|||+|||++.|...|++-|..||.+.+..|+- +++++| .|.|.+++.|++|+..+ +..++||.|+|.+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime--~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME--NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc--cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 44578999999999999999999999999999988832 334554 89999999999999999 9999999999976
No 83
>PF10429 Mtr2: Nuclear pore RNA shuttling protein Mtr2; InterPro: IPR019488 Mtr2 is a monomeric, dual-action, RNA-shuttle protein found in yeasts. Transport across the nuclear-cytoplasmic membrane is via the macro-molecular membrane-spanning nuclear pore complex, NPC. The pore is lined by a subset of NPC members called nucleoporins that present FG (Phe-Gly) receptors, characteristically GLFG and FXFG motifs, for shuttling RNAs and proteins. RNA cargo is bound to soluble transport proteins (nuclear export factors) such as Mex67 in yeasts, and TAP in metazoa, which pass along the pore by binding to successive FG receptors. Mtr2 when bound to Mex67 maximises this FG-binding. Mtr2 also acts independently of Mex67 in transporting the large ribosomal RNA subunit through the pore []. ; PDB: 1Q40_A 1Q42_A 1OF5_B.
Probab=98.24 E-value=3.8e-06 Score=73.44 Aligned_cols=99 Identities=10% Similarity=0.087 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHc-----cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeEeeeeCC
Q 015694 14 VVGNAFVEQYYHILH-----QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYE 88 (402)
Q Consensus 14 ~vg~~FV~~YY~~l~-----~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~~~~~~~I~~~d~q~s~~ 88 (402)
++.+.||+.||..|| +-...|..||..++.+.|+|. .+.+..+-.++|.+.+.. ..|.+.++|||...+
T Consensus 5 q~~E~FvKk~la~LD~~~~~~l~~~l~~F~~~~~~II~Ng~-----Pi~~~~~F~~~w~~~pv~-TqH~L~s~D~H~IPG 78 (166)
T PF10429_consen 5 QIIETFVKKILAHLDEQDPPNLNSFLTQFLPPNCKIIWNGT-----PIAQPTAFQQTWQQQPVQ-TQHQLTSFDCHVIPG 78 (166)
T ss_dssp CCHHHHHHHHHHHHCT-SS--HHHHHTTCECCEEEEEETTE-----EES-HHHHHHHHHCCS---EEEEEEEEEEEEETT
T ss_pred hhHHHHHHHHHHHhcCcchHHHHHHhHhhcCCCcEEEECCc-----cCCCHHHHHHHHHhCccc-eeeeeeeeeeeEeCC
Confidence 356789999999999 445578899999999999998 788889999999999943 489999999999975
Q ss_pred -CcEEEEEEEEEEeCCCcccceeEEEEeeEc
Q 015694 89 -KGVIVLVTGCLTGKDNVKKKFTQTFFLAPQ 118 (402)
Q Consensus 89 -~~vlv~V~G~l~~~~~~~r~F~qtF~L~~~ 118 (402)
|++++.|+|.|..++..+-|--|...|...
T Consensus 79 sgt~i~N~n~KVRFDEsGrdk~G~~a~l~~~ 109 (166)
T PF10429_consen 79 SGTFIINVNCKVRFDESGRDKLGEDADLPQP 109 (166)
T ss_dssp TTEEEEEEEEEEEEB-SSB-TTS-B--TTS-
T ss_pred CCeEEEeeeEEEEecCCCCCCCCCceeeccc
Confidence 679999999999987777777888877654
No 84
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.24 E-value=3.1e-06 Score=81.75 Aligned_cols=82 Identities=16% Similarity=0.164 Sum_probs=73.0
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeE--------EEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEE
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKK--------NGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLI 371 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~--------~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~ 371 (402)
.++.|||.|||.++|.+++.++|++||-|.+ |.+.++.+++.+|=|.+.|...+++.-|++.+ +..|+|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 3678999999999999999999999998864 56777777788999999999999999999999 99999999
Q ss_pred EEEEEeeeecc
Q 015694 372 IKIVLGVYIIS 382 (402)
Q Consensus 372 i~V~~~~~~~~ 382 (402)
|+|..|-+.-.
T Consensus 213 ~rVerAkfq~K 223 (382)
T KOG1548|consen 213 LRVERAKFQMK 223 (382)
T ss_pred EEEehhhhhhc
Confidence 99998866543
No 85
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.20 E-value=2.1e-06 Score=80.70 Aligned_cols=82 Identities=23% Similarity=0.259 Sum_probs=73.7
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEe
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLG 377 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~ 377 (402)
+.+...+||||+.+.++.++++..|+.||.|..+.|..++.. ..+||+||+|.+.+.++.+|...+..|.|+.++|.+-
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 455789999999999999999999999999999999999887 7899999999999999999995599999999998765
Q ss_pred eee
Q 015694 378 VYI 380 (402)
Q Consensus 378 ~~~ 380 (402)
...
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 443
No 86
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.18 E-value=2.3e-06 Score=79.45 Aligned_cols=82 Identities=22% Similarity=0.313 Sum_probs=73.2
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
..+..+||.|.|..+++++-|-..|.+|-.....++++++.+ +++|||||.|.+..++.+|+..| |..+|.|+|++.-
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 345689999999999999999999999998888889999888 99999999999999999999999 9999999998754
Q ss_pred eeee
Q 015694 377 GVYI 380 (402)
Q Consensus 377 ~~~~ 380 (402)
.-++
T Consensus 267 S~wk 270 (290)
T KOG0226|consen 267 SEWK 270 (290)
T ss_pred hhHH
Confidence 4443
No 87
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.12 E-value=2.1e-06 Score=79.09 Aligned_cols=69 Identities=23% Similarity=0.380 Sum_probs=62.8
Q ss_pred cEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 303 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
..+|||+|++.+.+.+|+.+|..||.+..+.+ ..||+||+|++..+|..|+..+ +..|+|-++.|.++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m-------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM-------KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee-------ecccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 47999999999999999999999999998877 4789999999999999999999 888988887777776
No 88
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.96 E-value=6.9e-06 Score=83.78 Aligned_cols=69 Identities=22% Similarity=0.209 Sum_probs=61.6
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEE
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIK 373 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~ 373 (402)
..++|+|-|||..+++++|+++|+.||.|+.++.. ...+|..||+|.|..+|++|++++ +..|.|++|+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 35799999999999999999999999999985432 245789999999999999999999 9999999988
No 89
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.94 E-value=3.7e-06 Score=76.56 Aligned_cols=74 Identities=23% Similarity=0.214 Sum_probs=67.0
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
.++|||+|+-..++++.|.++|-+-|+|.++.|..+++++.+ |+||.|.++-++.-|++.+ |+.+-++.++|.+
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 579999999999999999999999999999888777777555 9999999999999999999 9999998877654
No 90
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.83 E-value=0.00021 Score=65.45 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=64.1
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC--CcccEEEEEeCCHHHHHHHHHhC-CCccC---CEEEE
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK--QGYCFGFVAFETPGSVQSALEVL-SLISL---SLIIK 373 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~--~~~gfgFVeF~~~~~a~~Al~~~-~~~i~---Gr~i~ 373 (402)
..-++|||.+||.++...+|..+|..|-.-..+.+.+-... ..+-+||+.|.+...|.+|+.++ |+.|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34689999999999999999999999876655544332222 34579999999999999999999 88885 56788
Q ss_pred EEEeee
Q 015694 374 IVLGVY 379 (402)
Q Consensus 374 V~~~~~ 379 (402)
|.++.-
T Consensus 112 iElAKS 117 (284)
T KOG1457|consen 112 IELAKS 117 (284)
T ss_pred eeehhc
Confidence 888754
No 91
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.60 E-value=4.7e-05 Score=78.24 Aligned_cols=84 Identities=19% Similarity=0.259 Sum_probs=78.0
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
..+++||++||...++.+++++...||.++...+..+... .++||+|.+|.+..-...|+..+ |..++++.|.|..++
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 4579999999999999999999999999999999999886 89999999999999999999999 999999999999998
Q ss_pred eecccc
Q 015694 379 YIISRT 384 (402)
Q Consensus 379 ~~~~~~ 384 (402)
...++.
T Consensus 368 ~g~~~~ 373 (500)
T KOG0120|consen 368 VGASNA 373 (500)
T ss_pred ccchhc
Confidence 877753
No 92
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.59 E-value=0.00057 Score=55.51 Aligned_cols=80 Identities=13% Similarity=0.105 Sum_probs=62.5
Q ss_pred cEEEEccCCCCCCHHHHHHHhhc--CCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccC----CEEEEE
Q 015694 303 CSIYVRNLAFTTTSTELEEAFKI--FGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISL----SLIIKI 374 (402)
Q Consensus 303 ~~lfVgnLp~~vte~~L~~~F~~--fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~----Gr~i~V 374 (402)
++|.|+|+|...|.++|.+++.. .|...-+-+..|-.+ .+.|||||.|.+.+.+.+-.+.. |..+. .|.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999988864 355555667777655 68999999999999999888777 66554 567777
Q ss_pred EEeeeecc
Q 015694 375 VLGVYIIS 382 (402)
Q Consensus 375 ~~~~~~~~ 382 (402)
.+|.-...
T Consensus 82 ~yAriQG~ 89 (97)
T PF04059_consen 82 SYARIQGK 89 (97)
T ss_pred ehhHhhCH
Confidence 77755443
No 93
>PF15008 DUF4518: Domain of unknown function (DUF4518)
Probab=97.56 E-value=0.00065 Score=64.54 Aligned_cols=125 Identities=18% Similarity=0.223 Sum_probs=91.0
Q ss_pred CCHHHHHHHHHHHHHHHHcc--CcccccccccCCC-eeeccCCCCccc-eeccHHHHHHHHhcCCCCcce---EEEee--
Q 015694 10 PSAQVVGNAFVEQYYHILHQ--SPGLVHRFYQDSS-LLSRPDSNGSMT-TVTTMKAINDRILSLNYEDYT---AEIKT-- 80 (402)
Q Consensus 10 ~~~~~vg~~FV~~YY~~l~~--~p~~L~~fY~~~S-~l~~~~~~~~~~-~~~g~~~I~~~i~sl~~~~~~---~~I~~-- 80 (402)
.+...+|..|.++||.+||. +-=..--||.|.+ .+.....++... .+.|.+.+..+|++|-.+..- ..+.+
T Consensus 125 ~~~~~L~~~F~~WFf~llNs~~~~wgpqhFW~Da~L~~~~~~~~~~~e~~~~Ga~~vs~~Llsl~~e~~l~fnPNl~~~G 204 (262)
T PF15008_consen 125 YPIHLLAEEFCEWFFELLNSPQDDWGPQHFWPDAKLKLYYSTSEQNVEEYCEGAEEVSLRLLSLVKEERLFFNPNLDSDG 204 (262)
T ss_pred CCHHHHHHHHHHHHHHHhcccccccChhhccCCCeEEEEEEcCCCceeEEecCHHHHHHHHHHHhhcccEEECCCCCCCC
Confidence 46789999999999999998 3335567888876 444333334434 348999999999988754221 12333
Q ss_pred eEeeeeCCCcEEEEEEEEEEeCCCcccceeEEEEeeEcC--CCcEEEEeceEEeec
Q 015694 81 ADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQD--KGGYFVLNDVFRFVE 134 (402)
Q Consensus 81 ~d~q~s~~~~vlv~V~G~l~~~~~~~r~F~qtF~L~~~~--~~~y~V~nDifr~~~ 134 (402)
+.|..+..|-|+|.|.|+|-..+.-.=-|=|.|=|...+ ++.|.|.+=.+|...
T Consensus 205 ~k~~~~phGlV~V~v~GTvH~~~~ClGiFEq~FGLiRdP~~~N~WKiK~~~l~i~~ 260 (262)
T PF15008_consen 205 VKGRISPHGLVLVAVCGTVHRDNTCLGIFEQIFGLIRDPFAENNWKIKFVNLRIRG 260 (262)
T ss_pred cceEEcCCCcEEEEEeeeEecCCceEeehhhhhhcccCccccCceeEEEEEEEEEe
Confidence 566667778899999999987665556799999887653 458999987777654
No 94
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.56 E-value=0.0001 Score=71.05 Aligned_cols=94 Identities=16% Similarity=0.247 Sum_probs=77.6
Q ss_pred CcEEEEccCCCCCCHHH----H--HHHhhcCCCeeEEEEEEcCCC--Cccc-E-EEEEeCCHHHHHHHHHhC-CCccCCE
Q 015694 302 GCSIYVRNLAFTTTSTE----L--EEAFKIFGPIKKNGVQVRSNK--QGYC-F-GFVAFETPGSVQSALEVL-SLISLSL 370 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~----L--~~~F~~fG~I~~~~v~~~~~~--~~~g-f-gFVeF~~~~~a~~Al~~~-~~~i~Gr 370 (402)
..-+||-+|+..+-.++ | .++|++||.|+.+.|.++... ...+ + .||+|.+.++|.+||..- |..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45789999999887766 3 478999999999877554322 1122 2 499999999999999998 9999999
Q ss_pred EEEEEEeeeecccceEEEeeecccc
Q 015694 371 IIKIVLGVYIISRTFIEVQILVEPL 395 (402)
Q Consensus 371 ~i~V~~~~~~~~~~~~~~~~~~~~~ 395 (402)
-|+..+|-.+-|.+.+..+.|+.|+
T Consensus 194 ~lkatYGTTKYCtsYLRn~~CpNp~ 218 (480)
T COG5175 194 VLKATYGTTKYCTSYLRNAVCPNPD 218 (480)
T ss_pred eEeeecCchHHHHHHHcCCCCCCCC
Confidence 9999999999999999999999876
No 95
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.52 E-value=0.00027 Score=71.41 Aligned_cols=74 Identities=20% Similarity=0.251 Sum_probs=62.5
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEe
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLG 377 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~ 377 (402)
..-|-+++|||++|+++|.+||+.++ |..+.+ .+.+++..|=|||+|.+.+++++||+.....++.|-|+|.-+
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~-~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEI-PRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTA 83 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEE-eccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEcc
Confidence 45677889999999999999999997 665433 333457889999999999999999999988899999988765
No 96
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=97.52 E-value=0.00042 Score=71.50 Aligned_cols=123 Identities=20% Similarity=0.280 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHHHHHHHHccCcc-cccccccCCCeeec------cC--CC-------------Cc--------c-ceecc
Q 015694 10 PSAQVVGNAFVEQYYHILHQSPG-LVHRFYQDSSLLSR------PD--SN-------------GS--------M-TTVTT 58 (402)
Q Consensus 10 ~~~~~vg~~FV~~YY~~l~~~p~-~L~~fY~~~S~l~~------~~--~~-------------~~--------~-~~~~g 58 (402)
....++-.+|+++||..++.++. .|-..|+++|+++. .. .+ .. . .-..|
T Consensus 335 ~~l~~LV~~Fl~~y~~~yD~~d~q~~~~~y~dns~FSlsi~~~~~~s~~~~~~~~~Y~k~SRNi~~l~~~~~r~srl~~g 414 (585)
T KOG3763|consen 335 EELKQLVLQFLQQYYKIYDNNDGQLLLYAYHDNSTFSLTINFLPVPSHPDPSSLGKYFKDSRNILKLKDPYLRASRLKHG 414 (585)
T ss_pred hHHHHHHHHHHHHHHHhhcCchhhhHHhhcCccceeEEEecccCCCCCCchHHHHHHHhhcchhhhhcCHHHHHHhhhcc
Confidence 34566888999999999996666 56666778998862 11 00 00 0 12458
Q ss_pred HHHHHHHHhcCCCCcceEEEee--eEeeeeCCCcEEEEEEEEEEeCCC----cccc---eeEEEEeeEcCCCcEEEEece
Q 015694 59 MKAINDRILSLNYEDYTAEIKT--ADAQDSYEKGVIVLVTGCLTGKDN----VKKK---FTQTFFLAPQDKGGYFVLNDV 129 (402)
Q Consensus 59 ~~~I~~~i~sl~~~~~~~~I~~--~d~q~s~~~~vlv~V~G~l~~~~~----~~r~---F~qtF~L~~~~~~~y~V~nDi 129 (402)
...|...|.+||-. .|...+ +|.-.-..+++.+.|.|.+.-.+. .-++ |+.||+..|-++.+-.|.||.
T Consensus 415 ~~~Iv~aLs~LPkT--~Hdl~s~vvDv~~~~~~~l~ftv~G~f~d~~g~~~~s~~~~~~FtRtfvv~P~~ns~l~iv~d~ 492 (585)
T KOG3763|consen 415 ACDIVVALSALPKT--QHDLDSFVVDVWYQTGNLLGFTVAGVFRDGEGQNSPSNRALLGFTRTFVVTPRENSGLAIVNDQ 492 (585)
T ss_pred chHHHHHHHhCccc--hhhhhhhheeeeecccceEEEEEEEEeecCCccCCcccccccccceEEEEeeCCCCceEEEece
Confidence 88999999999943 565544 232222356788999999975431 2245 999999999998899999998
Q ss_pred EEeec
Q 015694 130 FRFVE 134 (402)
Q Consensus 130 fr~~~ 134 (402)
+-...
T Consensus 493 Lfi~~ 497 (585)
T KOG3763|consen 493 LFIAS 497 (585)
T ss_pred eEEee
Confidence 74443
No 97
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.46 E-value=0.00022 Score=58.90 Aligned_cols=68 Identities=31% Similarity=0.476 Sum_probs=41.3
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC------CCccCCEEEEE
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL------SLISLSLIIKI 374 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~------~~~i~Gr~i~V 374 (402)
|+.|+|.++...++.++|++.|++||.|..+.+.. +..-|||.|.+.+.|+.|+..+ ++.|++..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~-----G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR-----GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--T-----T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC-----CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 46789999999999999999999999999887643 3446999999999999999876 23455544433
No 98
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.43 E-value=5.8e-05 Score=77.06 Aligned_cols=81 Identities=22% Similarity=0.307 Sum_probs=73.3
Q ss_pred CCCCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEE
Q 015694 297 NEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIV 375 (402)
Q Consensus 297 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~ 375 (402)
..+.+.+++|+-.|...++..+|.++|+.+|.|..++++.|+++ +++|.+||+|.|.+++..||...|..+.|-+|.|.
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQ 253 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEec
Confidence 34566789999999999999999999999999999999999988 89999999999999999999777999999888876
Q ss_pred Ee
Q 015694 376 LG 377 (402)
Q Consensus 376 ~~ 377 (402)
+.
T Consensus 254 ~s 255 (549)
T KOG0147|consen 254 LS 255 (549)
T ss_pred cc
Confidence 54
No 99
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.24 E-value=0.00083 Score=67.99 Aligned_cols=77 Identities=18% Similarity=0.141 Sum_probs=64.0
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeE-EEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKK-NGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGV 378 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~-~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~ 378 (402)
...|-+++||+.||++||.+||+-.--+.. +.+..+...+..|=|||.|++.+.+++||......|+.|-|+|.-+.
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSS 180 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhH
Confidence 457889999999999999999997654444 34556666688899999999999999999999889999988876543
No 100
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.19 E-value=0.00035 Score=64.06 Aligned_cols=63 Identities=17% Similarity=0.289 Sum_probs=51.6
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCcc
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLIS 367 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i 367 (402)
-.+|||-||..++++++|+.+|+.|-.....+|. ++.+-+.+|++|++.+.|..|+..+ |..|
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~---~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIR---ARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe---cCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 4579999999999999999999999876655442 2236789999999999999998877 6544
No 101
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.03 E-value=0.0021 Score=63.75 Aligned_cols=84 Identities=17% Similarity=0.147 Sum_probs=70.5
Q ss_pred CcEEEEccCCCC-CCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeee
Q 015694 302 GCSIYVRNLAFT-TTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVY 379 (402)
Q Consensus 302 ~~~lfVgnLp~~-vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~ 379 (402)
++.|.|.||... +|.+-|..+|+-||.|.++.|+..+. --|.|.|.|...|+-|+..+ |+.+.||+|+|.+..-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 578899999765 89999999999999999999876543 46999999999999999999 9999999999998766
Q ss_pred ecccceEEEe
Q 015694 380 IISRTFIEVQ 389 (402)
Q Consensus 380 ~~~~~~~~~~ 389 (402)
.....--|+|
T Consensus 373 ~~vqlp~egq 382 (492)
T KOG1190|consen 373 TNVQLPREGQ 382 (492)
T ss_pred ccccCCCCCC
Confidence 5554444333
No 102
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.96 E-value=0.0023 Score=65.29 Aligned_cols=62 Identities=26% Similarity=0.396 Sum_probs=49.4
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC----Cccc---EEEEEeCCHHHHHHHHHhC
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK----QGYC---FGFVAFETPGSVQSALEVL 363 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~----~~~g---fgFVeF~~~~~a~~Al~~~ 363 (402)
-.++||||+||++++|+.|...|..||.+. +.+..+.+. ..+| |.|+.|+++.+++.-|.+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 368999999999999999999999999876 333322222 3456 9999999999998877765
No 103
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.92 E-value=0.00056 Score=63.24 Aligned_cols=73 Identities=22% Similarity=0.237 Sum_probs=63.1
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeeee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVYI 380 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~~ 380 (402)
.+.+.|.|++..+...+|.+.|.++|.+....+ ..+++||+|...+++.+|+..+ +..+.|+.|.+..+..-
T Consensus 99 ~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~~d 171 (216)
T KOG0106|consen 99 HFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNSRD 171 (216)
T ss_pred cceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhhhhcchhccchhhcCceeeecccCcc
Confidence 589999999999999999999999999844322 4678999999999999999999 99999999999555443
Q ss_pred c
Q 015694 381 I 381 (402)
Q Consensus 381 ~ 381 (402)
.
T Consensus 172 ~ 172 (216)
T KOG0106|consen 172 R 172 (216)
T ss_pred h
Confidence 3
No 104
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.89 E-value=0.0034 Score=49.21 Aligned_cols=67 Identities=15% Similarity=0.115 Sum_probs=44.8
Q ss_pred cEEEEccCCCCCCHHH----HHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 303 CSIYVRNLAFTTTSTE----LEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 303 ~~lfVgnLp~~vte~~----L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
..|||.|||.+.+... |++++..+|.-. +.| ..|-|+|.|.+.+.|.+|++.| |-.+-|++|.|++.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkV-l~v-------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKV-LSV-------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--E-EE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEE-EEE-------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 4689999999988765 566777887311 112 3467999999999999999999 88899999888765
No 105
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.68 E-value=0.0023 Score=62.65 Aligned_cols=84 Identities=17% Similarity=0.164 Sum_probs=72.0
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeE--------EEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccC
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKK--------NGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISL 368 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~--------~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~ 368 (402)
.....+|||-+|+..+++++|.++|.++|.|+. +.|-+++.+ +.+|=|.|.|+|...|+.|+.-. +..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 455679999999999999999999999998864 334455555 78999999999999999999998 99999
Q ss_pred CEEEEEEEeeeecc
Q 015694 369 SLIIKIVLGVYIIS 382 (402)
Q Consensus 369 Gr~i~V~~~~~~~~ 382 (402)
|..|+|.++-.+.-
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999998877654
No 106
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.65 E-value=0.0062 Score=56.17 Aligned_cols=73 Identities=16% Similarity=0.227 Sum_probs=60.2
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccC-CEEEEEEEe
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISL-SLIIKIVLG 377 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~-Gr~i~V~~~ 377 (402)
....+|+.|||..++.+.|..+|.+|+..+.++++.. .++.+||+|.+...+..|...+ +..|- ...|+|.++
T Consensus 145 pn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 145 PNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred CceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC----CCceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 3678999999999999999999999999998877543 3578999999998888888888 66655 666666654
No 107
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.61 E-value=0.0068 Score=61.91 Aligned_cols=79 Identities=19% Similarity=0.162 Sum_probs=63.5
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhh-cCCCeeEEEEEEc-CCCCcccEEEEEeCCHHHHHHHHHhCCCccC----CEEEE
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFK-IFGPIKKNGVQVR-SNKQGYCFGFVAFETPGSVQSALEVLSLISL----SLIIK 373 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~-~fG~I~~~~v~~~-~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~----Gr~i~ 373 (402)
...++||||+||.-++..+|-.+|. -||.|..++|=.| +-+..+|-|-|.|.+..+..+||.+.-+.|. .|++.
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~KRVE 447 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDIDKRVE 447 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccceeee
Confidence 4568999999999999999999999 7999999888666 3346789999999999999999998744433 24555
Q ss_pred EEEee
Q 015694 374 IVLGV 378 (402)
Q Consensus 374 V~~~~ 378 (402)
|..++
T Consensus 448 IkPYv 452 (520)
T KOG0129|consen 448 IKPYV 452 (520)
T ss_pred eccee
Confidence 55444
No 108
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.60 E-value=0.0011 Score=64.30 Aligned_cols=81 Identities=20% Similarity=0.198 Sum_probs=69.8
Q ss_pred cEEE-EccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEeeee
Q 015694 303 CSIY-VRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGVYI 380 (402)
Q Consensus 303 ~~lf-VgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~~~ 380 (402)
.++| |+||+++++.++|+..|..+|.|..+++.-+..+ ..+||||+.|........++......++|+.+.+..+-++
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCCC
Confidence 4454 9999999999999999999999999888766666 8899999999999999988887567888998999888877
Q ss_pred ccc
Q 015694 381 ISR 383 (402)
Q Consensus 381 ~~~ 383 (402)
..+
T Consensus 265 ~~~ 267 (285)
T KOG4210|consen 265 PKS 267 (285)
T ss_pred ccc
Confidence 654
No 109
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=96.25 E-value=0.035 Score=45.54 Aligned_cols=109 Identities=11% Similarity=0.136 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhc-C-CCCcceEEEeeeEeeeeCCCcEEE
Q 015694 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILS-L-NYEDYTAEIKTADAQDSYEKGVIV 93 (402)
Q Consensus 17 ~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~s-l-~~~~~~~~I~~~d~q~s~~~~vlv 93 (402)
..++++|++.+. .+-+.|..+|.++..+...+.+. .+.|.++|.+++.. + .+..+.+.+..+..+. .++.+++
T Consensus 2 ~~~~~~~~~a~~~~D~~~~~~~~~~d~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~a~~ 77 (121)
T PF13474_consen 2 EALLEEWIEAFERGDIDALLSLFSDDFVFFGTGPGE---IWRGREAIRAYFERDFESFRPISIEFEDVQVSV-SGDVAVV 77 (121)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHEEEEEEEEETTSSS---EEESHHHHHHHHHHHHHTHSEEEEEEEEEEEEE-ETTEEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHHhhCCCEEEEcCCCCc---eECCHHHHHHHHHHHhhhCceEEEEEEEEEEEE-CCCEEEE
Confidence 468899999998 55689999999888776654321 46799998887754 1 1246677777777765 3455666
Q ss_pred EEEEEEEe--CCCc-ccceeEEEEeeEcCCCcEEEEeceE
Q 015694 94 LVTGCLTG--KDNV-KKKFTQTFFLAPQDKGGYFVLNDVF 130 (402)
Q Consensus 94 ~V~G~l~~--~~~~-~r~F~qtF~L~~~~~~~y~V~nDif 130 (402)
...+.+.. ++.. ...+..||+|...++ +|.|...=.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~r~t~v~~k~~~-~Wki~h~H~ 116 (121)
T PF13474_consen 78 TGEFRLRFRNDGEEIEMRGRATFVFRKEDG-GWKIVHIHW 116 (121)
T ss_dssp EEEEEEEEECTTCEEEEEEEEEEEEEEETT-EEEEEEEEE
T ss_pred EEEEEEEEecCCccceeeEEEEEEEEEECC-EEEEEEEEe
Confidence 66665543 2222 467888999988876 999887533
No 110
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=96.24 E-value=0.13 Score=42.67 Aligned_cols=108 Identities=14% Similarity=0.131 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeee-ccCCCCccceeccHHHHHHHHhcC---CCCcceEEEeeeEeeeeCCCc
Q 015694 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLS-RPDSNGSMTTVTTMKAINDRILSL---NYEDYTAEIKTADAQDSYEKG 90 (402)
Q Consensus 16 g~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~-~~~~~~~~~~~~g~~~I~~~i~sl---~~~~~~~~I~~~d~q~s~~~~ 90 (402)
=+..+.+|+..++ .+++.|..+|.+++.+. ..|. ...|.++|.+.+..+ .....++.+.....+-..++.
T Consensus 6 i~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~~~g~-----~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (128)
T TIGR02246 6 IRALVATWEAAWAAGDAEGFADLFTPDGVFVTVPGQ-----VWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRFLGPDL 80 (128)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhhCCCceEECCCCC-----eecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEecCCCE
Confidence 3578889999999 48889999999988765 4443 578999999988643 122334555555544443443
Q ss_pred EEEEEEEEEEeCCCc-c-c--ceeEEEEeeEcCCCcEEEEece
Q 015694 91 VIVLVTGCLTGKDNV-K-K--KFTQTFFLAPQDKGGYFVLNDV 129 (402)
Q Consensus 91 vlv~V~G~l~~~~~~-~-r--~F~qtF~L~~~~~~~y~V~nDi 129 (402)
.++.....+...+.. . . ...-+|++...+ |+|.|..|=
T Consensus 81 A~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~-g~W~I~~~h 122 (128)
T TIGR02246 81 AIVHAIQTITAPGKGRARPDAAVRLTFVAVKRD-GRWLLAADH 122 (128)
T ss_pred EEEEEEEEEEcCCCCCCCCCcceEEEEEEEeeC-CeEEEEecc
Confidence 433333334333321 1 1 223345565555 499998863
No 111
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.09 E-value=0.0042 Score=61.71 Aligned_cols=71 Identities=17% Similarity=0.113 Sum_probs=55.5
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC---CCccCCEEEEEEE
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL---SLISLSLIIKIVL 376 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~---~~~i~Gr~i~V~~ 376 (402)
.++.|++||||++++|.+|-.++.+||.|..+.+.+. +.-+|++|.|.++|..-+.-. .-.+.|+.|.|.+
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG-----knQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~ 100 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG-----KNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQY 100 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeecc-----chhhhhhhcchhhhhheeecccccCccccCcceeehh
Confidence 4678999999999999999999999999998766543 336999999999877633222 4456777776655
No 112
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.01 E-value=0.0054 Score=61.10 Aligned_cols=82 Identities=18% Similarity=0.141 Sum_probs=64.7
Q ss_pred cEEEEccCCCCCCHHHHHHHhhcC--CCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC--CCccCCEEEEEEEee
Q 015694 303 CSIYVRNLAFTTTSTELEEAFKIF--GPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL--SLISLSLIIKIVLGV 378 (402)
Q Consensus 303 ~~lfVgnLp~~vte~~L~~~F~~f--G~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~--~~~i~Gr~i~V~~~~ 378 (402)
.++|+|||...++..+|+.+|..- |.-..+. ...||+||.+.+...+.+|++.+ .+.+.|+++.+...+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl-------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL-------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee-------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 478999999999999999998743 2111111 24689999999999999999999 679999999999998
Q ss_pred eeccc-ceEEEeee
Q 015694 379 YIISR-TFIEVQIL 391 (402)
Q Consensus 379 ~~~~~-~~~~~~~~ 391 (402)
.+.-| .+|-+++.
T Consensus 75 ~kkqrsrk~Qirni 88 (584)
T KOG2193|consen 75 PKKQRSRKIQIRNI 88 (584)
T ss_pred hHHHHhhhhhHhcC
Confidence 87766 34555543
No 113
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.99 E-value=0.017 Score=59.69 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=48.9
Q ss_pred HHHHHhhcCCCeeEEEEEEc-CCC---CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 318 ELEEAFKIFGPIKKNGVQVR-SNK---QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 318 ~L~~~F~~fG~I~~~~v~~~-~~~---~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
+++..+++||.|..|.+... ... .+.|-.||+|.+.+++++|.++| |..|+||.+...+.
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 45556779999999988776 332 46677899999999999999999 99999998766543
No 114
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.94 E-value=0.027 Score=59.44 Aligned_cols=77 Identities=17% Similarity=0.190 Sum_probs=63.9
Q ss_pred CCCc-EEEEccCCCCCCHHHHHHHhhcCCCeeE-EEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 300 AEGC-SIYVRNLAFTTTSTELEEAFKIFGPIKK-NGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 300 ~~~~-~lfVgnLp~~vte~~L~~~F~~fG~I~~-~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
..++ .|-+.|.|++++-+||.+||..|-.+.. +++.+...+...|-|.|-|++.+.|.+|...+ +..|..|.+++.|
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3455 6789999999999999999999976643 33444444477889999999999999999998 9999999998876
No 115
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.83 E-value=0.033 Score=48.37 Aligned_cols=55 Identities=22% Similarity=0.154 Sum_probs=43.2
Q ss_pred HHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEeee
Q 015694 318 ELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGVY 379 (402)
Q Consensus 318 ~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~~ 379 (402)
+|-+.|..||.+.-++.. .+--+|+|.+..+|.+|+...|+.++|+.|+|.+--+
T Consensus 52 ~ll~~~~~~GevvLvRfv-------~~~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFV-------GDTMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEE-------TTCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEe-------CCeEEEEECccHHHHHHHccCCcEECCEEEEEEeCCc
Confidence 677788899988766553 2347899999999999999999999999999987543
No 116
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=95.67 E-value=0.11 Score=41.27 Aligned_cols=101 Identities=17% Similarity=0.116 Sum_probs=66.7
Q ss_pred HHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeEeeeeCCCcEEEEEE
Q 015694 18 AFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGVIVLVT 96 (402)
Q Consensus 18 ~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~~~~~~~I~~~d~q~s~~~~vlv~V~ 96 (402)
+..++|...++ .+.+.|.++|.++..+...+. ...|.+++.+.+..-.......++.....+.. ++..++...
T Consensus 3 a~~~~~~~A~~~~D~~~~~~~~~~d~~~~~~~g-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~-gd~a~~~~~ 76 (107)
T PF14534_consen 3 ALEEQYEDAFNAGDIDALASLYADDFVFVGPGG-----TILGKEAILAAFKSGFARFSSIKFEDVEVRVL-GDTAVVRGR 76 (107)
T ss_dssp HHHHHHHHHHHTTHHHHHHTTEEEEEEEEETTS-----EEEEHHHHHHHHHHHCEEEEEEEEEEEEEEEE-TTEEEEEEE
T ss_pred HHHHHHHHHHHhCCHHHHHhhhCCCEEEECCCC-----CEeCHHHHHHHHhhccCCCceEEEEEEEEEEE-CCEEEEEEE
Confidence 56788888887 558899999999987775543 35689999998886443344556666666666 555555555
Q ss_pred EEEEeCCCc---ccceeEEEEeeEcCCCcEEE
Q 015694 97 GCLTGKDNV---KKKFTQTFFLAPQDKGGYFV 125 (402)
Q Consensus 97 G~l~~~~~~---~r~F~qtF~L~~~~~~~y~V 125 (402)
..++...+. ...+..+.++..++ |+|.|
T Consensus 77 ~~~~~~~~g~~~~~~~~~~~v~~k~~-g~W~i 107 (107)
T PF14534_consen 77 WTFTWRGDGEPVTIRGRFTSVWKKQD-GKWRI 107 (107)
T ss_dssp EEEEETTTTEEEEEEEEEEEEEEEET-TEEEE
T ss_pred EEEEEecCCceEEEEEEEEEEEEEeC-CEEEC
Confidence 556554322 23455555665564 47865
No 117
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.37 E-value=0.013 Score=58.55 Aligned_cols=89 Identities=20% Similarity=0.191 Sum_probs=64.7
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEc---CC---C--------CcccEEEEEeCCHHHHHHHHHhC-
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVR---SN---K--------QGYCFGFVAFETPGSVQSALEVL- 363 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~---~~---~--------~~~gfgFVeF~~~~~a~~Al~~~- 363 (402)
+..+++|.+-|||.+-.-+.|.++|+.+|.|+.|+|..- .. + ..+-+|+|+|+..+.|.+|.+.+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 456899999999999999999999999999999998654 11 1 12557999999999999999988
Q ss_pred CCccCCEEEEEEEeeeecccceEE
Q 015694 364 SLISLSLIIKIVLGVYIISRTFIE 387 (402)
Q Consensus 364 ~~~i~Gr~i~V~~~~~~~~~~~~~ 387 (402)
.-.-.-.-++|.+--+..-+..|.
T Consensus 308 ~e~~wr~glkvkLl~k~a~K~~~~ 331 (484)
T KOG1855|consen 308 PEQNWRMGLKVKLLGKKAPKIQIA 331 (484)
T ss_pred hhhhhhhcchhhhhhccCcccccc
Confidence 332222335555544444444433
No 118
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.35 E-value=0.0087 Score=56.16 Aligned_cols=70 Identities=17% Similarity=0.223 Sum_probs=56.6
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-------------CcccEEEEEeCCHHHHHHHHHhC-CCcc
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-------------QGYCFGFVAFETPGSVQSALEVL-SLIS 367 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-------------~~~gfgFVeF~~~~~a~~Al~~~-~~~i 367 (402)
...||++|+|..+....|+++|+.||.|-++.+...... ....=|.|+|.+...|.++...+ +..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 458999999999999999999999999998877543221 11223679999999999888888 8899
Q ss_pred CCEE
Q 015694 368 LSLI 371 (402)
Q Consensus 368 ~Gr~ 371 (402)
+|++
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9975
No 119
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.30 E-value=0.0045 Score=60.26 Aligned_cols=97 Identities=20% Similarity=0.338 Sum_probs=79.0
Q ss_pred CcEEEEccCCCCCCHH-HHH--HHhhcCCCeeEEEEEEcCC--C--CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEE
Q 015694 302 GCSIYVRNLAFTTTST-ELE--EAFKIFGPIKKNGVQVRSN--K--QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIK 373 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~-~L~--~~F~~fG~I~~~~v~~~~~--~--~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~ 373 (402)
.+.+||-+|+.....+ .|+ +.|.+||.|..+.+..+.. . .+.+-++|+|...+++..||..- |+.++|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 4567888888776444 443 5799999999987766552 1 34556899999999999999999 9999999999
Q ss_pred EEEeeeecccceEEEeeecccccccc
Q 015694 374 IVLGVYIISRTFIEVQILVEPLECAL 399 (402)
Q Consensus 374 V~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (402)
..+|-.+-+..+....+|..|. |.+
T Consensus 157 a~~gttkycs~~l~~~~c~~~~-cmy 181 (327)
T KOG2068|consen 157 ASLGTTKYCSFYLRNDICQNPD-CMY 181 (327)
T ss_pred HhhCCCcchhHHhhhhcccCcc-ccc
Confidence 9999999999999999999887 543
No 120
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=95.27 E-value=0.06 Score=52.65 Aligned_cols=74 Identities=12% Similarity=0.158 Sum_probs=58.1
Q ss_pred CCCcEEEEccCCC----CCC-------HHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCcc
Q 015694 300 AEGCSIYVRNLAF----TTT-------STELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLIS 367 (402)
Q Consensus 300 ~~~~~lfVgnLp~----~vt-------e~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i 367 (402)
...++|.++|+-. ..+ .++|++...+||.|+++.| .++ ...|.+-|.|.+.+.|..||+.| |..|
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv-~d~--hPdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVV-YDR--HPDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEE-ecc--CCCceeEEEeCChHHHHHHHHHhcCeee
Confidence 3457899999833 223 2456677889999998765 333 35789999999999999999999 9999
Q ss_pred CCEEEEEEE
Q 015694 368 LSLIIKIVL 376 (402)
Q Consensus 368 ~Gr~i~V~~ 376 (402)
+||+|.-++
T Consensus 340 dgRql~A~i 348 (382)
T KOG1548|consen 340 DGRQLTASI 348 (382)
T ss_pred cceEEEEEE
Confidence 999988654
No 121
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.23 E-value=0.019 Score=54.02 Aligned_cols=62 Identities=27% Similarity=0.390 Sum_probs=56.3
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL 363 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~ 363 (402)
...|||.||..-++.+.|.+.|+.||+|....+..|...+..+=++|+|...-.+.+|+...
T Consensus 31 ~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 31 HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred cceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHh
Confidence 36899999999999999999999999999988888888878888999999999988888766
No 122
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.11 E-value=0.061 Score=43.94 Aligned_cols=70 Identities=20% Similarity=0.212 Sum_probs=48.1
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEc--------CCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEEE
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVR--------SNKQGYCFGFVAFETPGSVQSALEVLSLISLSLII 372 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~--------~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i 372 (402)
.+.|.|-+.|.. ....+-+.|++||.|.+..-..+ ........-.|.|.++.+|++||..+|..|+|..|
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 456777788877 55678888999999876430000 01135667899999999999999999999998654
No 123
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.08 E-value=0.059 Score=38.67 Aligned_cols=52 Identities=21% Similarity=0.269 Sum_probs=38.5
Q ss_pred cEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHH
Q 015694 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSAL 360 (402)
Q Consensus 303 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al 360 (402)
+.|-|.+.+.+.. +.+...|..||.|....+- ....+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~-----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP-----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC-----CCCcEEEEEECCHHHHHhhC
Confidence 3456677776655 4455688999999986653 13457999999999999985
No 124
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=94.98 E-value=0.072 Score=52.59 Aligned_cols=95 Identities=17% Similarity=0.168 Sum_probs=70.4
Q ss_pred CCCCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC---CCccCCEEEE
Q 015694 297 NEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL---SLISLSLIIK 373 (402)
Q Consensus 297 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~---~~~i~Gr~i~ 373 (402)
.+-..+-.++|++|-..+++.+|-+.++.||+|..+.++-. +.-+.|+|+|.+.+..++... .+.++|..--
T Consensus 26 hk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~-----~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 26 HKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH-----KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc-----cceeeeeeccccchhhheehhccCcccccCchhh
Confidence 34445678999999999999999999999999998765432 235999999999999998654 7888887765
Q ss_pred EEEe-eeeccc-----------ceEEEeeeccccc
Q 015694 374 IVLG-VYIISR-----------TFIEVQILVEPLE 396 (402)
Q Consensus 374 V~~~-~~~~~~-----------~~~~~~~~~~~~~ 396 (402)
+.+. .....| +++|++++.-|.+
T Consensus 101 ~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpIt 135 (494)
T KOG1456|consen 101 FNYSTSQCIERPGDESATPNKVLLFTILNPQYPIT 135 (494)
T ss_pred cccchhhhhccCCCCCCCCCeEEEEEeecCccccc
Confidence 5554 222222 6777777665544
No 125
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.72 E-value=0.041 Score=56.88 Aligned_cols=69 Identities=13% Similarity=0.099 Sum_probs=55.2
Q ss_pred CcEEEEccCCCCCCH------HHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCE
Q 015694 302 GCSIYVRNLAFTTTS------TELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSL 370 (402)
Q Consensus 302 ~~~lfVgnLp~~vte------~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr 370 (402)
...|+|-|+|---.. .-|..+|+++|+|....+..+..+..+||.|++|.+..+|+.|++.+ |..|+.+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 457888888754222 23567899999999888887877789999999999999999999988 7766553
No 126
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=94.67 E-value=0.43 Score=47.32 Aligned_cols=76 Identities=16% Similarity=0.236 Sum_probs=64.6
Q ss_pred CCCCcEEEEccCCCC-CCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 299 EAEGCSIYVRNLAFT-TTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~-vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
..+++.+.|-+|... ++-+.|-.+|-.||.|.++..++-+ .|-|.|++.|...+++|+..+ ++.+-|.+|.|.+
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 456899999999876 6778899999999999998876543 567999999999999999999 8888888888766
Q ss_pred ee
Q 015694 377 GV 378 (402)
Q Consensus 377 ~~ 378 (402)
..
T Consensus 360 Sk 361 (494)
T KOG1456|consen 360 SK 361 (494)
T ss_pred cc
Confidence 54
No 127
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.65 E-value=0.025 Score=55.93 Aligned_cols=71 Identities=20% Similarity=0.095 Sum_probs=54.3
Q ss_pred cEEEEccCCCCCCHHHHHHHhhcCC----CeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEEEE
Q 015694 303 CSIYVRNLAFTTTSTELEEAFKIFG----PIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLSLIIK 373 (402)
Q Consensus 303 ~~lfVgnLp~~vte~~L~~~F~~fG----~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~ 373 (402)
-.|-.++||+++++.++.++|..-- ....+-.+.+.+++..|-|||.|..++.|+.||....-.||.|-|+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIE 236 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIE 236 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHH
Confidence 3567889999999999999997322 2233444455567788999999999999999999886666665544
No 128
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.63 E-value=0.022 Score=55.54 Aligned_cols=70 Identities=21% Similarity=0.324 Sum_probs=53.6
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEE---cCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEE
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQV---RSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLI 371 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~---~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~ 371 (402)
...+|||||-|.+|+++|.+.+...|--.-..|.+ +.+++++|||.|...+..++++-++.+ ...|.|..
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 45789999999999999988887666322112221 234489999999999999999999999 66777765
No 129
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.39 E-value=0.016 Score=62.51 Aligned_cols=76 Identities=11% Similarity=0.020 Sum_probs=67.8
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
..++||+|+|+..|.++|+.+++.+|.+++.+++..++++.+|.+||.|.+..++.+++... ...++-+.++|.++
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vs 812 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVS 812 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCcccccc
Confidence 46899999999999999999999999999998888888889999999999999999998877 77777777777663
No 130
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.37 E-value=0.044 Score=59.50 Aligned_cols=77 Identities=18% Similarity=0.256 Sum_probs=65.8
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCC--EEEEEEE
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLS--LIIKIVL 376 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~G--r~i~V~~ 376 (402)
...+.+|+|+|..++....|..+|..||.|..|.+ + ++.-|++|.|++...++.|+..+ +.-|+| +++.|.+
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy--~---hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY--R---HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDL 527 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeec--c---cCCcceeeecccCccchhhHHHHhcCcCCCCCccccccc
Confidence 45689999999999999999999999999998654 2 24679999999999999999999 888887 7788888
Q ss_pred eeeec
Q 015694 377 GVYII 381 (402)
Q Consensus 377 ~~~~~ 381 (402)
+-...
T Consensus 528 a~~~~ 532 (975)
T KOG0112|consen 528 ASPPG 532 (975)
T ss_pred ccCCC
Confidence 76544
No 131
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.34 E-value=0.071 Score=52.82 Aligned_cols=74 Identities=12% Similarity=0.162 Sum_probs=59.3
Q ss_pred cEEEEccCCCCCCHHHHHHHhhcCCC-eeE--EEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 303 CSIYVRNLAFTTTSTELEEAFKIFGP-IKK--NGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 303 ~~lfVgnLp~~vte~~L~~~F~~fG~-I~~--~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
..|-+++||+.++.++|-.+|..|.. |+. +.++++..++..|-|||.|.+.+.+..|.... .....+|-|+|.-
T Consensus 281 dcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 281 DCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 46778999999999999999998864 333 57777777788899999999999999998887 4444566666654
No 132
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.29 E-value=0.0091 Score=64.58 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=67.7
Q ss_pred CCCCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEE
Q 015694 297 NEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIV 375 (402)
Q Consensus 297 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~ 375 (402)
++...+.+||+|||+..+++.+|+..|..+|.+..+.|.....+...-||||.|.+...+-.|+..+ +..|+.-.+++.
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 3445678999999999999999999999999999988866545556779999999999999998888 666666567777
Q ss_pred Eee
Q 015694 376 LGV 378 (402)
Q Consensus 376 ~~~ 378 (402)
+|-
T Consensus 447 lG~ 449 (975)
T KOG0112|consen 447 LGQ 449 (975)
T ss_pred ccc
Confidence 774
No 133
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=93.74 E-value=0.0043 Score=66.66 Aligned_cols=71 Identities=20% Similarity=0.238 Sum_probs=59.0
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhCCCccCCE
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVLSLISLSL 370 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr 370 (402)
.+.+++||+||+..+.+.+|...|..+|.+..+.+....+. +.+|+||++|.+.+.+.+||......+-|+
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK 736 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGK 736 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhh
Confidence 44578999999999999999999999999887766534444 789999999999999999999884444443
No 134
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.70 E-value=0.21 Score=47.90 Aligned_cols=60 Identities=17% Similarity=0.113 Sum_probs=48.2
Q ss_pred HHHHHHhhcCCCeeEEEEEEcCCC--CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 317 TELEEAFKIFGPIKKNGVQVRSNK--QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 317 ~~L~~~F~~fG~I~~~~v~~~~~~--~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
+++++..++||.|..|.|....+. ...---||+|...+++-+|+-.+ |..|+||.++-.+
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 567788899999999877666544 22334799999999999999999 9999999876543
No 135
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=93.62 E-value=0.17 Score=53.75 Aligned_cols=82 Identities=18% Similarity=0.102 Sum_probs=65.3
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeE-EEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKK-NGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~-~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
..-+..|||..||..+++.++-++|+..-.|.+ |.|....+.+.++-|||.|..+++...|+.-. .+.++.|.|+|.-
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 445789999999999999999999998777766 55555555578899999999988777777666 8888999998865
Q ss_pred eeee
Q 015694 377 GVYI 380 (402)
Q Consensus 377 ~~~~ 380 (402)
-..+
T Consensus 511 i~~~ 514 (944)
T KOG4307|consen 511 IADY 514 (944)
T ss_pred hhhH
Confidence 4443
No 136
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=93.23 E-value=0.22 Score=38.91 Aligned_cols=72 Identities=15% Similarity=0.203 Sum_probs=49.6
Q ss_pred HHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCC--CCcceEEEeeeEeeeeCCCcEEEEEE
Q 015694 20 VEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YEDYTAEIKTADAQDSYEKGVIVLVT 96 (402)
Q Consensus 20 V~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~--~~~~~~~I~~~d~q~s~~~~vlv~V~ 96 (402)
|++||..++ .+.+.|..||.++..+..++. ...|.++|.+.+..+- +.+.+++|..+ ...++.+++...
T Consensus 1 V~~~~~a~~~~d~~~i~~~~~~d~~~~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~gd~v~~~~~ 72 (102)
T PF12680_consen 1 VRRFFEAWNAGDLDAIAALFAPDAVFHDPGG-----TLRGREAIREFFEEFFESFPDIRFEIHDI---FADGDRVVVEWT 72 (102)
T ss_dssp HHHHHHHHHTTHHHHHHHTEEEEEEEEETTS-----EEESHHHHHHHHHHHHHHEEEEEEEEEEE---EEETTEEEEEEE
T ss_pred CHHHHHHHHcCCHHHHHHHcCCCEEEEeCCC-----cccCHHHHHHHHHHHHhcCCceEEEEEEE---EEcCCEEEEEEE
Confidence 789999999 556899999999998887643 4889999999887654 34555555554 222344444444
Q ss_pred EEE
Q 015694 97 GCL 99 (402)
Q Consensus 97 G~l 99 (402)
+..
T Consensus 73 ~~~ 75 (102)
T PF12680_consen 73 VTG 75 (102)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 137
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=93.17 E-value=0.42 Score=43.06 Aligned_cols=73 Identities=16% Similarity=0.082 Sum_probs=58.0
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeeee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVYI 380 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~~ 380 (402)
..++.|.+||...+..+|++...+-|.+....+.+| |+|.|+|-..++++-|+..+ ...+..--+.+.+.++.
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~ 188 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRG 188 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEecc
Confidence 358999999999999999999999999988777544 58999999999999999988 55544433444444443
No 138
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C.
Probab=93.16 E-value=1.1 Score=37.13 Aligned_cols=104 Identities=16% Similarity=0.219 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhc-----CCCCcceEEEeeeEeeeeCCCc
Q 015694 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILS-----LNYEDYTAEIKTADAQDSYEKG 90 (402)
Q Consensus 17 ~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~s-----l~~~~~~~~I~~~d~q~s~~~~ 90 (402)
.+-|+.|+..+. .+.+.|.+.++++..+.+.+ +|.. ....+++-.+.+.+ -....+..+|.++|... +.
T Consensus 7 ~~~v~~Y~dg~~~gD~~~l~~~f~~~a~~~~~~-~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~i~i~g---~~ 81 (116)
T PF12893_consen 7 EATVQDYFDGLYNGDSEKLRSAFHPDARLQGVR-KGKL-RTMPIEEFIARVKSRVSPKPPGQERKESILSIDIDG---DV 81 (116)
T ss_dssp HHHHHHHHHHHHHT-HHHHGGGEEEEEEEEEEE-TTEE-EEEETHHHHHHHHHC---H-SSTT-EEEEEEEEEET---TE
T ss_pred HHHHHHHHHHHHhcCHHHHHHhhCCCcEEEEEc-CCce-EEeCHHHHHHHHHhhccccCCCCCceeEEEEEEEEC---CE
Confidence 456788999888 67789999999998776655 3332 34455556666654 33456778888777653 44
Q ss_pred EEEEEEEEEEeCCCcccceeEEEEeeEcCCCcEEEEeceEE
Q 015694 91 VIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFR 131 (402)
Q Consensus 91 vlv~V~G~l~~~~~~~r~F~qtF~L~~~~~~~y~V~nDifr 131 (402)
-++.|.-.+. .+.|.-.|.|...++ +|.|.|=+|.
T Consensus 82 A~a~v~~~~~-----~~~~~d~~~L~K~dg-~WkIv~k~~~ 116 (116)
T PF12893_consen 82 ASAKVEYEFP-----GFWFVDYFTLVKTDG-GWKIVSKVYH 116 (116)
T ss_dssp EEEEEEEEEE-----TEEEEEEEEEEEETT-EEEEEEEEEE
T ss_pred EEEEEEEEEC-----CCceEEEEEEEEECC-EEEEEEEecC
Confidence 4555555554 347999999999776 9999998874
No 139
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=92.55 E-value=0.73 Score=34.23 Aligned_cols=54 Identities=17% Similarity=0.262 Sum_probs=41.2
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcC----CCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIF----GPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL 363 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~f----G~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~ 363 (402)
-.+|+|+++. +++.++++.+|..| ++. ++.++=| . -|-|.|.+.+.|.+||.++
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~-~IEWIdD-t-----ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF-RIEWIDD-T-----SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCc-eEEEecC-C-----cEEEEECCHHHHHHHHHcC
Confidence 3589999985 48889999999998 543 3544333 2 2679999999999999864
No 140
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=91.64 E-value=0.19 Score=52.52 Aligned_cols=76 Identities=12% Similarity=0.047 Sum_probs=58.7
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHhhc-CCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCcc---CCEEE
Q 015694 298 EEAEGCSIYVRNLAFTTTSTELEEAFKI-FGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLIS---LSLII 372 (402)
Q Consensus 298 ~~~~~~~lfVgnLp~~vte~~L~~~F~~-fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i---~Gr~i 372 (402)
+...++.|||.||-.-.|..+|+.++.+ .|.|... ++|+ -+..|||.|.+.+.|.+...+| ++.. |+|.|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk---IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK---IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH---hhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 4456789999999999999999999995 5555543 4453 3567899999999999988888 7654 66777
Q ss_pred EEEEee
Q 015694 373 KIVLGV 378 (402)
Q Consensus 373 ~V~~~~ 378 (402)
.+.++-
T Consensus 515 ~adf~~ 520 (718)
T KOG2416|consen 515 IADFVR 520 (718)
T ss_pred Eeeecc
Confidence 776653
No 141
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=91.12 E-value=0.28 Score=48.90 Aligned_cols=79 Identities=16% Similarity=0.094 Sum_probs=59.5
Q ss_pred cEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcC--CC--CcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEee
Q 015694 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRS--NK--QGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGV 378 (402)
Q Consensus 303 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~--~~--~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~ 378 (402)
..|-|.||...++.++++.+|...|.|..+.|+-.. .+ ...-.|||.|.|..++..|-..-...|-++-|-|..+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 389999999999999999999999999988775322 22 23456999999999988775544666667666655544
Q ss_pred eec
Q 015694 379 YII 381 (402)
Q Consensus 379 ~~~ 381 (402)
...
T Consensus 88 ~~~ 90 (479)
T KOG4676|consen 88 DEV 90 (479)
T ss_pred CCC
Confidence 433
No 142
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=90.37 E-value=0.14 Score=48.29 Aligned_cols=61 Identities=18% Similarity=0.144 Sum_probs=47.4
Q ss_pred HHHHHHhh-cCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 317 TELEEAFK-IFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 317 ~~L~~~F~-~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
+++...|+ +||.|..+.| .++.. ...|=.+|.|...++|++|++.+ +-.++|++|...+.-
T Consensus 83 Ed~f~E~~~kygEiee~~V-c~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNV-CDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhh-hcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34444444 8999988643 33333 56788999999999999999999 999999999887754
No 143
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=90.19 E-value=1.8 Score=37.58 Aligned_cols=73 Identities=21% Similarity=0.257 Sum_probs=56.9
Q ss_pred CCCCcEEEEccCCCCCCH-HHHH---HHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEE
Q 015694 299 EAEGCSIYVRNLAFTTTS-TELE---EAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLSLIIKI 374 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte-~~L~---~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V 374 (402)
++.-.+|.|+-|..++.. +||+ ..++.||+|.++.+. ++--|.|.|.|..+|=+|+.+.+-..-|..+..
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c------GrqsavVvF~d~~SAC~Av~Af~s~~pgtm~qC 156 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC------GRQSAVVVFKDITSACKAVSAFQSRAPGTMFQC 156 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec------CCceEEEEehhhHHHHHHHHhhcCCCCCceEEe
Confidence 455678889988887744 4444 557789999997652 455699999999999999999977888888877
Q ss_pred EEe
Q 015694 375 VLG 377 (402)
Q Consensus 375 ~~~ 377 (402)
+|.
T Consensus 157 sWq 159 (166)
T PF15023_consen 157 SWQ 159 (166)
T ss_pred ecc
Confidence 764
No 144
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=89.59 E-value=2.7 Score=34.51 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCC
Q 015694 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN 70 (402)
Q Consensus 17 ~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~ 70 (402)
...|+.||..++ .+.+.|..+|.++..+.+.... ....|.++|.+.+..+.
T Consensus 6 ~~~v~~~~~a~~~~D~~~~~~l~aed~~~~~p~~~---~~~~G~~~i~~~~~~~~ 57 (122)
T cd00781 6 KAAVQRYVEAVNAGDPEGIVALFADDATVEDPVGS---PPRSGRAAIAAFYAQSL 57 (122)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHcCCCeEEeCCCCC---CCccCHHHHHHHHHHHh
Confidence 567899999998 5788999999999988764321 25889999999998765
No 145
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=88.13 E-value=0.74 Score=48.83 Aligned_cols=68 Identities=15% Similarity=0.089 Sum_probs=56.8
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
...++||||+...+..+-++.+...+|.|..+.. --|||.+|.+.....+|+..+ ...++|..+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr--------~~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKR--------DKFGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhh--------hhhcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3578999999999999999999999998876432 129999999999999999998 8888887765544
No 146
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=87.39 E-value=0.92 Score=40.96 Aligned_cols=82 Identities=13% Similarity=0.160 Sum_probs=47.9
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhc-CCCe---eEEEEEEcCCC---CcccEEEEEeCCHHHHHHHHHhC-CCccCC--
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKI-FGPI---KKNGVQVRSNK---QGYCFGFVAFETPGSVQSALEVL-SLISLS-- 369 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~-fG~I---~~~~v~~~~~~---~~~gfgFVeF~~~~~a~~Al~~~-~~~i~G-- 369 (402)
.++.+|-|++||.++|++++.+.++. +|.- ..+.-...... ...+-|||.|.+.+++..-.... |+.|-+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 45689999999999999998887666 6655 33321222222 23566899999999988877776 654422
Q ss_pred ---EEEEEEEeeeec
Q 015694 370 ---LIIKIVLGVYII 381 (402)
Q Consensus 370 ---r~i~V~~~~~~~ 381 (402)
.+..|.++.+..
T Consensus 85 g~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQK 99 (176)
T ss_dssp S-EEEEEEEE-SS--
T ss_pred CCCcceeEEEcchhc
Confidence 345677776643
No 147
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.73 E-value=1.9 Score=41.80 Aligned_cols=74 Identities=15% Similarity=0.156 Sum_probs=52.4
Q ss_pred EEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEeeee-ccc
Q 015694 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGVYI-ISR 383 (402)
Q Consensus 305 lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~~~-~~~ 383 (402)
|-|-+.+.. ....|..+|++||.|.+... - ....+-+|.|.+...|++||...|.+|+| .|.+|++. --|
T Consensus 200 VTVfGFppg-~~s~vL~~F~~cG~Vvkhv~--~---~ngNwMhirYssr~~A~KALskng~ii~g---~vmiGVkpCtDk 270 (350)
T KOG4285|consen 200 VTVFGFPPG-QVSIVLNLFSRCGEVVKHVT--P---SNGNWMHIRYSSRTHAQKALSKNGTIIDG---DVMIGVKPCTDK 270 (350)
T ss_pred EEEeccCcc-chhHHHHHHHhhCeeeeeec--C---CCCceEEEEecchhHHHHhhhhcCeeecc---ceEEeeeecCCH
Confidence 334455544 34567788999999876322 1 23458899999999999999999999999 45677776 333
Q ss_pred ceEE
Q 015694 384 TFIE 387 (402)
Q Consensus 384 ~~~~ 387 (402)
+.|+
T Consensus 271 svi~ 274 (350)
T KOG4285|consen 271 SVIN 274 (350)
T ss_pred HHhc
Confidence 4443
No 148
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=84.54 E-value=1.6 Score=45.50 Aligned_cols=70 Identities=17% Similarity=0.164 Sum_probs=54.1
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhc--CCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC---CCccCCEEEEEE
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKI--FGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL---SLISLSLIIKIV 375 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~--fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~---~~~i~Gr~i~V~ 375 (402)
..|.+.++-||.+.-.++++.+|+. +-++.+|..-... --||+|++..+|+.|.+.+ -..|.||+|.-.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 3578899999999999999999984 5565555443221 2699999999999999888 467888877644
Q ss_pred E
Q 015694 376 L 376 (402)
Q Consensus 376 ~ 376 (402)
|
T Consensus 248 I 248 (684)
T KOG2591|consen 248 I 248 (684)
T ss_pred h
Confidence 3
No 149
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=83.18 E-value=4.5 Score=31.90 Aligned_cols=54 Identities=15% Similarity=0.262 Sum_probs=39.0
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL 363 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~ 363 (402)
.+-.||. .|......||.++|+.||.|.- .. ++ + .-|||...+.+.+..++..+
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~V-sW-i~-d----TSAfV~l~~r~~~~~v~~~~ 62 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYV-SW-IN-D----TSAFVALHNRDQAKVVMNTL 62 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEE-EE-EC-T----TEEEEEECCCHHHHHHHHHH
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEE-EE-Ec-C----CcEEEEeecHHHHHHHHHHh
Confidence 3566665 8999999999999999999763 22 22 2 35999999999999888776
No 150
>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.
Probab=82.70 E-value=29 Score=29.58 Aligned_cols=111 Identities=12% Similarity=0.035 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHccCcccccccccCC-CeeeccCCCCccceeccHHHHHHHHh---cCCCCcceEEEeeeEeeeeCC
Q 015694 13 QVVGNAFVEQYYHILHQSPGLVHRFYQDS-SLLSRPDSNGSMTTVTTMKAINDRIL---SLNYEDYTAEIKTADAQDSYE 88 (402)
Q Consensus 13 ~~vg~~FV~~YY~~l~~~p~~L~~fY~~~-S~l~~~~~~~~~~~~~g~~~I~~~i~---sl~~~~~~~~I~~~d~q~s~~ 88 (402)
++|..-|-++==.+-.-+++....+|.++ ++|...-.+ ..+.|.+.|..++. +....+.+..|.+-..|-..+
T Consensus 3 ~eI~~l~~~w~~ai~tgD~~~~~~ly~~d~av~~Pt~s~---~~~~g~~~~~~YF~~~l~~~~~~~~~tI~~p~V~~lg~ 79 (128)
T PF08332_consen 3 QEIAALFDRWNDAIQTGDPETYAKLYAPDVAVFEPTVSN---QLREGLEFHKFYFDHFLAKKPQGVNTTILNPHVRLLGD 79 (128)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHEEEEEEEEEGGGTT---SEEESCHHHHHHHHHTGTTTSSCEEEEEEEEEEEEEST
T ss_pred HHHHHHHHHHHHHHHcCCHHHHhhhcCCCeeEeccccCC---ceecChHHHHHHHhcccccCCCceeeEecCCeEEEcCC
Confidence 45666666655555558999999999999 777654332 16789999997776 334445556677666666555
Q ss_pred CcEEEEEEEEEEeCC--Ccc--cceeEEEEeeEcCCCcEEEEe
Q 015694 89 KGVIVLVTGCLTGKD--NVK--KKFTQTFFLAPQDKGGYFVLN 127 (402)
Q Consensus 89 ~~vlv~V~G~l~~~~--~~~--r~F~qtF~L~~~~~~~y~V~n 127 (402)
+..++.=.=.++..+ ... ..--.||+-...++ +|.|.+
T Consensus 80 ~~Ai~~gvy~f~~~d~~G~~~~~~areT~v~~~~~g-~W~ivh 121 (128)
T PF08332_consen 80 NAAIDAGVYTFQFVDKDGVPRTVQARETRVWQKRDG-KWKIVH 121 (128)
T ss_dssp TEEEEEEEEEEEEESTTSSEEEEEEEEEEEEEEETT-EEEEEE
T ss_pred CEEEEeeEEEEEeecCCCCeeeEEEeEEEEEEEeCC-eEEEEE
Confidence 555544444444433 222 34466777777775 898875
No 151
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=82.47 E-value=0.59 Score=45.50 Aligned_cols=81 Identities=12% Similarity=-0.077 Sum_probs=65.4
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhCC-CccCCEEEEEEEee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVLS-LISLSLIIKIVLGV 378 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~~-~~i~Gr~i~V~~~~ 378 (402)
..+++|+|++.+++.+.+...++..+|......+...... .++|++++.|...+.+..||...+ ..+.++.+...+.-
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 4678999999999999999999999997776665554444 789999999999999999999984 57777777666655
Q ss_pred eec
Q 015694 379 YII 381 (402)
Q Consensus 379 ~~~ 381 (402)
...
T Consensus 167 ~~~ 169 (285)
T KOG4210|consen 167 RRG 169 (285)
T ss_pred ccc
Confidence 544
No 152
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=81.83 E-value=0.89 Score=46.45 Aligned_cols=96 Identities=22% Similarity=0.189 Sum_probs=65.6
Q ss_pred CcEEEEccCCCCC-CHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEeeee
Q 015694 302 GCSIYVRNLAFTT-TSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGVYI 380 (402)
Q Consensus 302 ~~~lfVgnLp~~v-te~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~~~ 380 (402)
.+.|-+.-.++.. +..+|...|.+||.|..|.+-.. .-.|.|+|.+...|-.|....+..|++|-|||.|--..
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchhccccceecCceeEEEEecCC
Confidence 3444444456554 56889999999999998776333 23489999999998888777799999999999987663
Q ss_pred cccceEEEe-eeccccccccccC
Q 015694 381 ISRTFIEVQ-ILVEPLECALFGT 402 (402)
Q Consensus 381 ~~~~~~~~~-~~~~~~~~~~~~~ 402 (402)
.-.-.=.++ -.++|++..=|+|
T Consensus 447 ~~tn~pav~te~~eP~ee~~fqt 469 (526)
T KOG2135|consen 447 PVTNIPAVPTEEVEPDEEEEFQT 469 (526)
T ss_pred cccCcccCccCCCCCccchhccc
Confidence 321000000 1347887766654
No 153
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=80.78 E-value=8.3 Score=28.97 Aligned_cols=55 Identities=4% Similarity=0.123 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEE
Q 015694 312 FTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKI 374 (402)
Q Consensus 312 ~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V 374 (402)
..++-.+++..+.+|+-. +|..++ .| =||.|.+..+|+++.... +..+.+.+|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~~---~I~~d~----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWD---RIRDDR----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCcc---eEEecC----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 357789999999999843 344443 34 489999999999999998 88887777654
No 154
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=75.76 E-value=11 Score=36.49 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=36.7
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCH
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETP 353 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~ 353 (402)
+-..-||++||+.++.-.+|+..+.+.|..- ..|. ..+ ++|-||+.|.+.
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~is--wkg-~~~k~flh~~~~ 377 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTP-MSIS--WKG-HFGKCFLHFGNR 377 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCc-eeEe--eec-CCcceeEecCCc
Confidence 3345699999999999999999999887543 1221 122 566789999875
No 155
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=73.22 E-value=27 Score=28.64 Aligned_cols=60 Identities=5% Similarity=0.174 Sum_probs=40.7
Q ss_pred HHHHHHHHHcc-CcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCC--CCcceEEEeee
Q 015694 19 FVEQYYHILHQ-SPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YEDYTAEIKTA 81 (402)
Q Consensus 19 FV~~YY~~l~~-~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~--~~~~~~~I~~~ 81 (402)
-++.||+.+++ +.+.|..||.++..+...... ....|.++|.+.+..+- +.+++++|..+
T Consensus 3 iv~~~~~a~~~~d~~~~~~~~~~d~~~~~~~~~---~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~ 65 (129)
T TIGR02096 3 LAQHWIEAFNRGDMDAVLALLAEDVLYDDNQGG---RVLGGKAQLARFLAPYRTAFPDLLVDVVVC 65 (129)
T ss_pred HHHHHHHHHHCCCHHHHHHhcCCCeEEEcCCCC---cEeccHHHHHHHHHHHHHhCchhhceeEEE
Confidence 47889999984 788999999999877655431 13457888887665332 33556665543
No 156
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=73.21 E-value=11 Score=34.33 Aligned_cols=61 Identities=25% Similarity=0.258 Sum_probs=41.9
Q ss_pred CHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC---CCccCCEEEEEEEeeee
Q 015694 315 TSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL---SLISLSLIIKIVLGVYI 380 (402)
Q Consensus 315 te~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~---~~~i~Gr~i~V~~~~~~ 380 (402)
....|+++|..|+.+.....+. +.+-..|.|.+.+.|.+|...+ +..++|+.|++.++-..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~-----sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK-----SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET-----TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcC-----CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 3478999999999988765432 3445789999999999999986 47899999999988433
No 157
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=69.70 E-value=15 Score=27.97 Aligned_cols=58 Identities=16% Similarity=0.064 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHhhcCCCee-----EEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 312 FTTTSTELEEAFKIFGPIK-----KNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 312 ~~vte~~L~~~F~~fG~I~-----~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
..++..+|..++..-+.|. .+.| ...|.||+-. .+.+..++..+ +..++||+++|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I-------~~~~S~vev~-~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDI-------FDNFSFVEVP-EEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE--------SS-EEEEE--TT-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEE-------eeeEEEEEEC-HHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4578889988888776553 3444 2447888875 45788888888 89999999999875
No 158
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=68.92 E-value=37 Score=27.48 Aligned_cols=67 Identities=7% Similarity=0.095 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcC--CCCcceEEEeeeEee
Q 015694 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL--NYEDYTAEIKTADAQ 84 (402)
Q Consensus 16 g~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl--~~~~~~~~I~~~d~q 84 (402)
-..++..|...++ .+.+.+..+|.++..+.+.+.. .....|.++|.+.+... ....+.|-+.+....
T Consensus 9 I~~l~~~~~~~~D~~~~~~~~~lft~d~~~~~~~~~--~~~~~G~~~i~~~~~~~~~~~~~~~H~~~~~~v~ 78 (127)
T PF13577_consen 9 IRDLIARYARALDTGDWEEWADLFTEDAVFDFPGFG--FGRYRGRDAIRAFLRARFDGFAATRHMVTNPVVD 78 (127)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETTTC--EEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhCCCHHHHHhccCCcEEEEEeCcc--ccccCCHHHHHHHHHHhcccccceeEEccceEEE
Confidence 3567778888888 6777999999999988777531 12588999999988764 222445555554433
No 159
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=64.41 E-value=58 Score=26.65 Aligned_cols=59 Identities=12% Similarity=0.196 Sum_probs=39.8
Q ss_pred HHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCC--CCcceEEEeeeEe
Q 015694 21 EQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YEDYTAEIKTADA 83 (402)
Q Consensus 21 ~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~--~~~~~~~I~~~d~ 83 (402)
+.|+..++ .+.+.+..||.++..+...+. ....|.+++.+.+..+- |.+.+++|..+-+
T Consensus 5 ~~~~~~~n~~d~~~~~~~~~~d~~~~~~~~----~~~~G~~~~~~~~~~~~~afPD~~~~i~~~~~ 66 (126)
T PF07366_consen 5 RFYEEVWNRGDLDALDELVAPDVVFHDPGP----GPPVGREGFKEFLKELRAAFPDLRFEIEDVVA 66 (126)
T ss_dssp HHHHHHHHTT-GCHHHGTEEEEEEEEGCTT----TEEEHHHHHHHHHHHHHHHSTTTEEEEEEEEE
T ss_pred HHHHHHHhCCCHHHHHHhcCCCEEEEecCC----CCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEE
Confidence 44555656 478899999999998877654 15778887777665332 4477787766544
No 160
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=62.99 E-value=32 Score=29.74 Aligned_cols=95 Identities=18% Similarity=0.197 Sum_probs=60.4
Q ss_pred cCcccccccccCCCeeecc-CCCCccceeccHHHHHHHHhcCC-CCcceEEEeeeEeeeeCCCcEEEEEEEEEEeC----
Q 015694 29 QSPGLVHRFYQDSSLLSRP-DSNGSMTTVTTMKAINDRILSLN-YEDYTAEIKTADAQDSYEKGVIVLVTGCLTGK---- 102 (402)
Q Consensus 29 ~~p~~L~~fY~~~S~l~~~-~~~~~~~~~~g~~~I~~~i~sl~-~~~~~~~I~~~d~q~s~~~~vlv~V~G~l~~~---- 102 (402)
.+-+-|.+||.++..+.-. +. ...|.++|.+.+...- ......+.+..+-|-.-. |=+..++|.+...
T Consensus 26 ~D~~av~~~YtdDav~f~~~~~-----~~~Gk~~i~k~~~~~~~~~~~~~~f~~~el~v~~~-GD~a~~~~~~~~~~~~~ 99 (137)
T COG4319 26 KDADAVADFYTDDAVVFPPPGL-----QRKGKAAIRKAFEGIFAMGIGPLKFTLEELQVHES-GDVAFVTALLLLTGTKK 99 (137)
T ss_pred ccHHHHHHhcCCceEEecCCCC-----cccCHHHHHHHHHHHHHhccCCCcceeeeeeeecc-CCEEEEEEeeeeeccCC
Confidence 5556888999999866543 44 5889999998886321 111234444455553323 3345667766543
Q ss_pred CCcc--cceeEEEEeeEcCCCcEEEEece
Q 015694 103 DNVK--KKFTQTFFLAPQDKGGYFVLNDV 129 (402)
Q Consensus 103 ~~~~--r~F~qtF~L~~~~~~~y~V~nDi 129 (402)
+.+. +.--=|.++.++.+|+|+|..|-
T Consensus 100 dg~~~~~~~Rat~v~rK~~dg~Wk~~~dh 128 (137)
T COG4319 100 DGPPADLAGRATYVFRKEADGGWKLAHDH 128 (137)
T ss_pred CCcchhheeeeEEEEEEcCCCCEEEEEec
Confidence 2222 45566889999998899999983
No 161
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=57.49 E-value=8.9 Score=40.14 Aligned_cols=83 Identities=12% Similarity=0.075 Sum_probs=54.0
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhh-cCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CC---cc-CCEEEE
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFK-IFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SL---IS-LSLIIK 373 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~-~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~---~i-~Gr~i~ 373 (402)
..+++-|+|++..-|..+|.+.-. ..|.-.-+.+..|-.. ...|||||-|.+.+++....++. |. .| ..|.++
T Consensus 387 ~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~ 466 (549)
T KOG4660|consen 387 PRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIAS 466 (549)
T ss_pred chhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeee
Confidence 345666777777666666555432 2444444445555333 67899999999999998888877 43 23 446678
Q ss_pred EEEeeeeccc
Q 015694 374 IVLGVYIISR 383 (402)
Q Consensus 374 V~~~~~~~~~ 383 (402)
|.+|.....+
T Consensus 467 itYArIQGk~ 476 (549)
T KOG4660|consen 467 ITYARIQGKE 476 (549)
T ss_pred eehhhhhchH
Confidence 8887766654
No 162
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=50.46 E-value=11 Score=41.49 Aligned_cols=75 Identities=16% Similarity=0.094 Sum_probs=59.4
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CC--ccCCEEEEEEE
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SL--ISLSLIIKIVL 376 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~--~i~Gr~i~V~~ 376 (402)
+-..+.++-|..-+.+..-|..+|++||.+.+++.+++- ..+.|+|...++|-.|+.++ |+ ...|-+.+|++
T Consensus 296 plqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~-----N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ 370 (1007)
T KOG4574|consen 296 PLQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL-----NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSF 370 (1007)
T ss_pred cCcchhhhhcccccchHHHHHHHHHhhcchhhheecccc-----cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEe
Confidence 334566777888888999999999999999988765553 35899999999999999988 54 45677778887
Q ss_pred eee
Q 015694 377 GVY 379 (402)
Q Consensus 377 ~~~ 379 (402)
+..
T Consensus 371 ak~ 373 (1007)
T KOG4574|consen 371 AKT 373 (1007)
T ss_pred ccc
Confidence 753
No 163
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=49.49 E-value=1.5e+02 Score=24.54 Aligned_cols=66 Identities=14% Similarity=-0.016 Sum_probs=44.0
Q ss_pred cEEEEccCCCCCCHHHHHHHhhcCC-CeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCC
Q 015694 303 CSIYVRNLAFTTTSTELEEAFKIFG-PIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLS 369 (402)
Q Consensus 303 ~~lfVgnLp~~vte~~L~~~F~~fG-~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~G 369 (402)
..+-+...|.-++.++|..+.+.+- .|..++|+++.. .++..+.+.|.+..+|..=.... |..++.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~-pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT-PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC-CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3344444555566667766655553 456667766543 47778999999999999887766 666655
No 164
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=46.02 E-value=70 Score=25.47 Aligned_cols=44 Identities=14% Similarity=0.210 Sum_probs=34.4
Q ss_pred EEEEeCCHHHHHHHHHhC--CCccCCEEEEEEEeeeeccc-ceEEEe
Q 015694 346 GFVAFETPGSVQSALEVL--SLISLSLIIKIVLGVYIISR-TFIEVQ 389 (402)
Q Consensus 346 gFVeF~~~~~a~~Al~~~--~~~i~Gr~i~V~~~~~~~~~-~~~~~~ 389 (402)
|.|+|.+..-|++.++.- .+.++++.++|....+..-. ..++++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~ 47 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVF 47 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEE
Confidence 579999999999999887 78889988888777666554 445544
No 165
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=45.96 E-value=4.7 Score=40.46 Aligned_cols=63 Identities=17% Similarity=0.058 Sum_probs=52.2
Q ss_pred cEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccC
Q 015694 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISL 368 (402)
Q Consensus 303 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~ 368 (402)
++++|++|...+...++-+.|..+|.+.+.++.... ...+|-++|....+...|+..+|..+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~---~s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASKS---RSSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccC---CCcchhhhHhhhhhHHHHHHhcchhhh
Confidence 679999999999999999999999999887663322 334667999999999999998877665
No 166
>PF03284 PHZA_PHZB: Phenazine biosynthesis protein A/B; InterPro: IPR004964 The phenazine biosynthesis proteins A and B are involved in the biosynthesis of this antibiotic. Phenazine is a nitrogen-containing heterocyclic molecule with important implications in virulence, competition and biological control.; GO: 0017000 antibiotic biosynthetic process; PDB: 3EX9_A 3JUP_B 3DZL_A 3JUN_A 3JUO_A 3CNM_A 3JUM_B 3JUQ_A 3B4O_A 3B4P_B ....
Probab=45.00 E-value=2.1e+02 Score=25.01 Aligned_cols=102 Identities=17% Similarity=0.172 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHccCcccccccccCCCee-eccCCCCccceeccHHHHHH-HHhcCC-CCcceEEEeeeEeeeeC-C
Q 015694 13 QVVGNAFVEQYYHILHQSPGLVHRFYQDSSLL-SRPDSNGSMTTVTTMKAIND-RILSLN-YEDYTAEIKTADAQDSY-E 88 (402)
Q Consensus 13 ~~vg~~FV~~YY~~l~~~p~~L~~fY~~~S~l-~~~~~~~~~~~~~g~~~I~~-~i~sl~-~~~~~~~I~~~d~q~s~-~ 88 (402)
-+.-+.=|+||-.+--++|-.-|.+|.++.+- .|....|.+....|.+.+.+ .+.+|. |.+ .+...+..-.+- .
T Consensus 17 R~~NR~~Ve~Ym~t~g~~RL~Rh~LF~eDG~~glwtTdtG~Piv~~G~~~L~~havwslkcFPD--WeW~nv~ifeT~DP 94 (162)
T PF03284_consen 17 RRINRATVEQYMNTKGQDRLRRHELFTEDGCGGLWTTDTGEPIVIRGRDRLAEHAVWSLKCFPD--WEWYNVRIFETQDP 94 (162)
T ss_dssp HHHHHHHHHHHHC--GGGGGGGGGGEEEEEEEEESS-TTSS-EEEESHHHHHHHHHHHHHHSTT---EEEEEEEEEBSST
T ss_pred HHhhHHHHHHHHHcCchhhhhhheeeccCCccccccCCCCceEEEEhHHHHHHHHHHHHHHCCC--cEEEEEEeecccCC
Confidence 34678889999998888888899999977655 67777788889999999888 344443 222 333334434443 3
Q ss_pred CcEEEEEEEEEEe--CCC----cccceeEEEEee
Q 015694 89 KGVIVLVTGCLTG--KDN----VKKKFTQTFFLA 116 (402)
Q Consensus 89 ~~vlv~V~G~l~~--~~~----~~r~F~qtF~L~ 116 (402)
+.+.|-+-|.=++ .+- -.-+|-++|-|.
T Consensus 95 ~~fwVEcdG~G~i~fpGypeg~y~NHfiHsFel~ 128 (162)
T PF03284_consen 95 NHFWVECDGRGKILFPGYPEGYYENHFIHSFELE 128 (162)
T ss_dssp TEEEEEEEEEEEE--TTS--EEEEEEEEEEEEEE
T ss_pred CEEEEEecCccceecCCCCcccceeeeEEEEEee
Confidence 5677777776554 331 246899999984
No 167
>PF12642 TpcC: Conjugative transposon protein TcpC; InterPro: IPR024735 This family of bacterial proteins are annotated as conjugative transposon protein TcpC. The transfer clostridial plasmid (tcp) locus is part of some conjugative antibiotic resistance and virulence plasmids. TcpC was one of five genes whose products had low-level sequence identity to Tn916 proteins, having similarity to ORF13 homologues from Tn916, Tn5397, and CW459tet [].; PDB: 3UB1_A.
Probab=43.20 E-value=84 Score=29.07 Aligned_cols=89 Identities=20% Similarity=0.335 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHccCc-ccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeEeeeeCCCcEE
Q 015694 14 VVGNAFVEQYYHILHQSP-GLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGVI 92 (402)
Q Consensus 14 ~vg~~FV~~YY~~l~~~p-~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~~~~~~~I~~~d~q~s~~~~vl 92 (402)
.--..|+..|++.+-+.- +.|.+|..+...+...+. . +. -.+|..+..-...++. .
T Consensus 140 ~~i~~fl~~Ff~aY~t~~~~~L~~y~~~~~~~~l~~~---~-----------------~~--~~~v~~~~~~~~~~~~-~ 196 (232)
T PF12642_consen 140 KPIEEFLEQFFKAYLTGNQGDLSYYMKPGAIIGLNGA---P-----------------YK--FVKVDDIKVYKTKDKG-R 196 (232)
T ss_dssp HHHHHHHHHHHHHHHHS-HHHHHTTB-TT-----------------------------SE--EEEEEEEEEEEEETTE-E
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhcCCcccccCCC---c-----------------eE--EEeeeeEEeecCCCCc-E
Confidence 456789999999997555 889888887775522221 0 00 1345444444443443 3
Q ss_pred EEEEEEEEeCCCc-ccceeEEEEeeEcC-CCcEEEE
Q 015694 93 VLVTGCLTGKDNV-KKKFTQTFFLAPQD-KGGYFVL 126 (402)
Q Consensus 93 v~V~G~l~~~~~~-~r~F~qtF~L~~~~-~~~y~V~ 126 (402)
+.|. .++..+.. .....|+|.|.=.. +|+|+|.
T Consensus 197 ~~v~-tVt~~~~~t~~~~~~~y~LtL~~~~~~w~V~ 231 (232)
T PF12642_consen 197 VVVQ-TVTFKDPGTKATLTQQYTLTLTKRGGRWYVT 231 (232)
T ss_dssp EEE---EEEEEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EEEE-EEEEEECCCCcEEEEEEEEEEEEcCCEEEEe
Confidence 3333 44443322 46677777554432 2499985
No 168
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=43.00 E-value=5.3 Score=37.12 Aligned_cols=65 Identities=26% Similarity=0.376 Sum_probs=53.2
Q ss_pred CCCCcEEEEcc----CCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC
Q 015694 299 EAEGCSIYVRN----LAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL 363 (402)
Q Consensus 299 ~~~~~~lfVgn----Lp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~ 363 (402)
.....+++.|| |...++++.+...|+.-|++..+++-.+.+++.+.++|+.+....+.-.++...
T Consensus 77 ~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y 145 (267)
T KOG4454|consen 77 DEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLY 145 (267)
T ss_pred chhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhh
Confidence 34456778888 888899999999999999999998888877788889999988777766666543
No 169
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=42.64 E-value=48 Score=24.60 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=15.1
Q ss_pred HHHHHHhhcCCCeeEEEE
Q 015694 317 TELEEAFKIFGPIKKNGV 334 (402)
Q Consensus 317 ~~L~~~F~~fG~I~~~~v 334 (402)
.+||++|+.+|.|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999976544
No 170
>PF11533 DUF3225: Protein of unknown function (DUF3225); InterPro: IPR024507 This family of proteins has no known function.; PDB: 2OWP_A 2RCD_B.
Probab=42.34 E-value=2.2e+02 Score=24.28 Aligned_cols=113 Identities=10% Similarity=0.051 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHccCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeEeeeeCCCcEE
Q 015694 13 QVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGVI 92 (402)
Q Consensus 13 ~~vg~~FV~~YY~~l~~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~~~~~~~I~~~d~q~s~~~~vl 92 (402)
.+|...|-+.+--++.++-+-|..|+-++..-.+-|-. ...+|.++|...-..-+...-..++..........+ +
T Consensus 10 aev~aaf~~YE~AL~~nDv~~Ld~lFw~~p~TvRyg~~---E~LyG~~aI~aFR~~R~~~~~~R~l~~~~itt~G~d--~ 84 (125)
T PF11533_consen 10 AEVTAAFDRYERALMANDVDALDALFWDDPRTVRYGAG---ENLYGHDAIRAFRAARPGGGPARTLERTVITTFGRD--F 84 (125)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHCB--STT-EEEETT---EEEESHHHHHHHHHHS--TTTT-EEEEEEEEEETTT--E
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHhccCCceEEECCC---ccccCHHHHHHHHhcCCCCCCCcEEEEEEEEEecCc--e
Confidence 45777787666566667778999888876644444321 158999999998877654444456655555554444 3
Q ss_pred EEEEEEEEeCCCcc-cceeEEEEeeEcCCCcEEEEeceEEee
Q 015694 93 VLVTGCLTGKDNVK-KKFTQTFFLAPQDKGGYFVLNDVFRFV 133 (402)
Q Consensus 93 v~V~G~l~~~~~~~-r~F~qtF~L~~~~~~~y~V~nDifr~~ 133 (402)
-+|+-.+...+... =+=+|+++-. +. +|.|..--..++
T Consensus 85 A~v~tef~r~~~~~~GRQsQtWvr~--~~-gWrIvaAHVS~~ 123 (125)
T PF11533_consen 85 ATVSTEFRRDGSGRIGRQSQTWVRF--PD-GWRIVAAHVSLM 123 (125)
T ss_dssp EEEEEEEEETTECCEEEEEEEEEEE--TT-EEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCceeEeEEEEEEC--CC-CEEEEEEEEeec
Confidence 35555666555333 2347777765 44 798876544443
No 171
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=38.52 E-value=82 Score=30.72 Aligned_cols=80 Identities=16% Similarity=0.118 Sum_probs=59.8
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC--------CcccEEEEEeCCHHHHHH----HHHhC---
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK--------QGYCFGFVAFETPGSVQS----ALEVL--- 363 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~--------~~~gfgFVeF~~~~~a~~----Al~~~--- 363 (402)
+-..++|.+.|+..+++-..+-..|-+||+|.++.++.+..+ +..+-..+.|-+.+.+.. .|+.+
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 344678999999999999999999999999999998876511 334556788887766433 33333
Q ss_pred CCccCCEEEEEEEee
Q 015694 364 SLISLSLIIKIVLGV 378 (402)
Q Consensus 364 ~~~i~Gr~i~V~~~~ 378 (402)
...++...|++.+..
T Consensus 92 K~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 92 KTKLKSESLTLSFVS 106 (309)
T ss_pred HHhcCCcceeEEEEE
Confidence 567888888887766
No 172
>PF15601 Imm42: Immunity protein 42
Probab=35.48 E-value=12 Score=32.18 Aligned_cols=67 Identities=10% Similarity=0.272 Sum_probs=45.0
Q ss_pred HHHHHHHHHHcc----------CcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeEeeeeC
Q 015694 18 AFVEQYYHILHQ----------SPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSY 87 (402)
Q Consensus 18 ~FV~~YY~~l~~----------~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~~~~~~~I~~~d~q~s~ 87 (402)
.|+..||+++.. -|-.+.+||...=...-.. ....-++.|++.+..++.......|..++.||.+
T Consensus 16 dfl~sFFsti~~~lE~~~wGskfP~Lm~~LY~g~L~~~~~~-----~A~~eL~~I~~~l~~~~p~~ViWD~~dl~~~ppW 90 (134)
T PF15601_consen 16 DFLHSFFSTISYRLENEGWGSKFPLLMNELYRGYLRYEELE-----KALKELEEIRKELKKFPPSEVIWDIEDLSKQPPW 90 (134)
T ss_pred HHHHHHHHHHHHHhhccCCCCcchHHHHHHHcCCCCHHHHH-----HHHHHHHHHHHHHhcCChhhheechhhcccCCCC
Confidence 567777777662 2344556665432211111 1345678999999999999888899999999998
Q ss_pred CC
Q 015694 88 EK 89 (402)
Q Consensus 88 ~~ 89 (402)
++
T Consensus 91 g~ 92 (134)
T PF15601_consen 91 GD 92 (134)
T ss_pred cc
Confidence 64
No 173
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.11 E-value=1.7e+02 Score=31.26 Aligned_cols=82 Identities=17% Similarity=0.147 Sum_probs=60.3
Q ss_pred CCcEEEEccCCCC-CCHHHHHHHhhcC----CCeeEEEEEEcCCC-----------------------------------
Q 015694 301 EGCSIYVRNLAFT-TTSTELEEAFKIF----GPIKKNGVQVRSNK----------------------------------- 340 (402)
Q Consensus 301 ~~~~lfVgnLp~~-vte~~L~~~F~~f----G~I~~~~v~~~~~~----------------------------------- 340 (402)
..++|-|-|+.|+ +...+|.-+|+.| |.|.++.|....-+
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 3689999999997 7889999998865 57877765321100
Q ss_pred -------------CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeeeecc
Q 015694 341 -------------QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVYIIS 382 (402)
Q Consensus 341 -------------~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~~~~ 382 (402)
...-||.|+|.+.+.|.+....+ |+.+...-.++.+-+-.++
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDd 308 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDD 308 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCC
Confidence 11237889999999999999999 9998877666666544444
No 174
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=30.65 E-value=48 Score=26.09 Aligned_cols=47 Identities=17% Similarity=0.204 Sum_probs=37.4
Q ss_pred HHHHccCcccccccccCCC-eeeccCCCCccceeccHHHHHHHHhcCC
Q 015694 24 YHILHQSPGLVHRFYQDSS-LLSRPDSNGSMTTVTTMKAINDRILSLN 70 (402)
Q Consensus 24 Y~~l~~~p~~L~~fY~~~S-~l~~~~~~~~~~~~~g~~~I~~~i~sl~ 70 (402)
|..|.+.-..+.+|..+.. +|-|.|.+|.+-+++.+.++.+.+.-..
T Consensus 22 ~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~ 69 (83)
T cd06404 22 LEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYE 69 (83)
T ss_pred HHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCHHHHHHHHHHHH
Confidence 5556666667888888766 8899999999888999999998876443
No 175
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=29.08 E-value=32 Score=24.79 Aligned_cols=48 Identities=13% Similarity=-0.040 Sum_probs=26.1
Q ss_pred cccEEEEEeCC-HHHHHHHHHhCCCccCCEEEEEEEeeeecccceEEEee
Q 015694 342 GYCFGFVAFET-PGSVQSALEVLSLISLSLIIKIVLGVYIISRTFIEVQI 390 (402)
Q Consensus 342 ~~gfgFVeF~~-~~~a~~Al~~~~~~i~Gr~i~V~~~~~~~~~~~~~~~~ 390 (402)
.+|||||...+ ..+.--.-..+..-++|-++.|.+-. ...+..-++++
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~V~v~i~~-~~~~~~~eg~v 55 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGDKVLVRITP-PSRGKRPEGEV 55 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT-EEEEEEEE-SSSEEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCCEEEEEEec-CCCCCCCCEEE
Confidence 57899999886 22211122333445677777777776 55556666553
No 176
>COG5073 VID24 Vacuolar import and degradation protein [Intracellular trafficking and secretion]
Probab=28.77 E-value=29 Score=32.76 Aligned_cols=75 Identities=20% Similarity=0.207 Sum_probs=55.3
Q ss_pred HHHHHHHHHHccCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeEeeeeCCCcEEEEEEE
Q 015694 18 AFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGVIVLVTG 97 (402)
Q Consensus 18 ~FV~~YY~~l~~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~~~~~~~I~~~d~q~s~~~~vlv~V~G 97 (402)
.-|.-||..-.+++..+.+.|...+-+.++|. .+.|.+ +...+.-.+.++|.+||-+- -++--|=+++|
T Consensus 52 ~~ve~~~~~~~kn~~~~~~s~~~~~~~Lr~G~-----qF~G~Q-----is~~~~~~v~v~i~~Vdl~~-kd~~sl~~l~G 120 (272)
T COG5073 52 KKVETYYMIRHKNKRRLFSSYTRRSGFLRNGA-----QFGGVQ-----ISGYPPLTVEVNIDTVDLPK-KDDYSLPHLCG 120 (272)
T ss_pred eeEeecceecccCceEeeeeccchhhhccCcc-----ccccEe-----ccCCcceEEEEEEEEEeccc-cccccccceee
Confidence 34667888888899999999998777888887 566765 34455445688899999888 34334478899
Q ss_pred EEEeCC
Q 015694 98 CLTGKD 103 (402)
Q Consensus 98 ~l~~~~ 103 (402)
++....
T Consensus 121 ~l~i~~ 126 (272)
T COG5073 121 TLNIQN 126 (272)
T ss_pred EEEEec
Confidence 987654
No 177
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=27.04 E-value=2.7e+02 Score=31.08 Aligned_cols=25 Identities=20% Similarity=0.563 Sum_probs=13.6
Q ss_pred ceeEEEEeeEcCCCcEEEEeceEEeecc
Q 015694 108 KFTQTFFLAPQDKGGYFVLNDVFRFVEE 135 (402)
Q Consensus 108 ~F~qtF~L~~~~~~~y~V~nDifr~~~~ 135 (402)
..-|-+.|.. + -||+.-..|.++++
T Consensus 406 SILQhlllir--n-Dy~~rpqYykLIEe 430 (1102)
T KOG1924|consen 406 SILQHLLLIR--N-DYYIRPQYYKLIEE 430 (1102)
T ss_pred HHHHHHHHHh--h-hhhhhHHHHHHHHH
Confidence 3344444432 2 47777766666654
No 178
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=25.48 E-value=2.9e+02 Score=28.70 Aligned_cols=67 Identities=12% Similarity=0.060 Sum_probs=53.4
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcC-CCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCC
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIF-GPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLS 369 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~f-G~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~G 369 (402)
+..|+|=-+|..++..||-.|...| -.|..+++++|... ++=...|.|.+..+|..-.+.. |..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7889999999999999999988755 45777888875443 4556789999999999888776 666655
No 179
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=25.44 E-value=68 Score=26.83 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=27.0
Q ss_pred CCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCH-HHHHHHHH
Q 015694 314 TTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETP-GSVQSALE 361 (402)
Q Consensus 314 vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~-~~a~~Al~ 361 (402)
.+.+.|++.|+.|.+++ +.......+ +.|++.|+|... .....|+.
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~g-h~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQG-HTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETTE-EEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCCC-CcEEEEEEECCChHHHHHHHH
Confidence 35588999999999986 555555543 789999999854 33444443
No 180
>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria. Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.
Probab=25.43 E-value=1.2e+02 Score=23.76 Aligned_cols=44 Identities=27% Similarity=0.245 Sum_probs=24.0
Q ss_pred EEEeeeEeeeeCCCcEEEEEEEEEEeCCCcccceeEEEEeeEcCCCcEEE
Q 015694 76 AEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFV 125 (402)
Q Consensus 76 ~~I~~~d~q~s~~~~vlv~V~G~l~~~~~~~r~F~qtF~L~~~~~~~y~V 125 (402)
+++..+.-... ++ ...|+..+...++....+ +|.|...++ .|+|
T Consensus 67 ~~~~~v~~~~~-g~--~A~V~v~~~~~~g~~~~~--~~~lvk~dg-~Wkv 110 (111)
T PF12870_consen 67 IKIVEVEENTI-GD--TATVTVKITYKDGKEKTF--TVPLVKEDG-KWKV 110 (111)
T ss_dssp EEEEEEEEEEE-SS--EEEEEEEEEETTS-EEEE--EEEEEEETT-EEEE
T ss_pred eEEEEEEEecc-CC--EEEEEEEEEECCCCeeEE--EEEEEEECC-EEEe
Confidence 44444444433 33 245566666655444443 667777554 9988
No 181
>smart00593 RUN domain involved in Ras-like GTPase signaling.
Probab=24.97 E-value=40 Score=24.70 Aligned_cols=44 Identities=14% Similarity=0.412 Sum_probs=31.6
Q ss_pred HHHHHHHHHHccCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCC
Q 015694 18 AFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN 70 (402)
Q Consensus 18 ~FV~~YY~~l~~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~ 70 (402)
.-..+|.+.|..+.+.+.+||.+.|.+.-.+ +...+...+.+|.
T Consensus 12 ~~L~~~l~~l~~~~~~~~~~Y~~~A~l~~~~---------~~~~l~~~L~~L~ 55 (64)
T smart00593 12 KLLSSWLNLLLSDEELLSKYYEPWAFLRDPE---------EGEQLLGLLVGLS 55 (64)
T ss_pred hHHHHHHHHHHhChHHHHHhCCCCceeeChh---------HHHHHHHHHhCcc
Confidence 3456788888889999999999999886422 3445555555553
No 182
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=23.58 E-value=1.2e+02 Score=27.46 Aligned_cols=40 Identities=28% Similarity=0.376 Sum_probs=32.9
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEc
Q 015694 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVR 337 (402)
Q Consensus 298 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~ 337 (402)
....+..+++++++..++..++...|..+|.+....+...
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 3455789999999999999999999999999966555433
No 183
>PRK11901 hypothetical protein; Reviewed
Probab=23.20 E-value=7.5e+02 Score=24.63 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=35.8
Q ss_pred cCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEE--EEeCCHHHHHHHHHhCCCccC
Q 015694 309 NLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGF--VAFETPGSVQSALEVLSLISL 368 (402)
Q Consensus 309 nLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgF--VeF~~~~~a~~Al~~~~~~i~ 368 (402)
.|----+++.|+.|..+.+ +..+.+..-.......|.. =.|.+.+.|..|+..|+..|.
T Consensus 249 QL~Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~lq 309 (327)
T PRK11901 249 QLSSASRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEVQ 309 (327)
T ss_pred EeecCCCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHHH
Confidence 3334456788888887776 3333333221111234443 378999999999999965543
No 184
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=22.86 E-value=4.8e+02 Score=25.49 Aligned_cols=55 Identities=11% Similarity=0.059 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcC
Q 015694 12 AQVVGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69 (402)
Q Consensus 12 ~~~vg~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl 69 (402)
...--...|+.||..++ .+.+.|..++.++..+...... ..+.|.++|...+..+
T Consensus 212 ~~~~~~~~v~~~~~A~~~gD~~~l~~lla~Dv~~~~p~~~---~~~~G~~~v~~~~~~~ 267 (339)
T PRK08241 212 DDPEERALLARYVAAFEAYDVDALVALLTEDATWSMPPFP---LWYRGRDAIAAFLAGQ 267 (339)
T ss_pred CChHHHHHHHHHHHHHhcCCHHHHHHHhcCCEEEEcCCCC---CcccCHHHHHHHHHhh
Confidence 34566778999999998 4777899999999877765431 2488999999999775
No 185
>KOG4381 consensus RUN domain-containing protein [Signal transduction mechanisms]
Probab=21.18 E-value=26 Score=35.28 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=36.5
Q ss_pred HHHHHHHH---------HHHHHccCcccccccccCCCeeeccCCCCccceeccHHHHHHHHh
Q 015694 15 VGNAFVEQ---------YYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRIL 67 (402)
Q Consensus 15 vg~~FV~~---------YY~~l~~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~ 67 (402)
=|++|+|- |-.++-.+.+.|++||.+.+.|.+.-...-...+.|...|...+.
T Consensus 117 kgRAwiR~aL~ek~l~~Y~~~~lad~~~~~eFy~~~alm~~e~s~~L~gLl~gLn~i~~~f~ 178 (368)
T KOG4381|consen 117 KGRAWIRVALNEKRLSDYLSTLLADEELLSEFYEPWALMDEEESAILPGLLVGLNAIDFSFC 178 (368)
T ss_pred cchHHHHHHhhhhhHHHHHHHHHHhHHHHHHHhcchHHHhHHHHHHHHHhhcCHHHHHHHhh
Confidence 36677777 999999899999999999999833322111224566666655544
No 186
>PF05941 Chordopox_A20R: Chordopoxvirus A20R protein; InterPro: IPR010267 This family consists of several Chordopoxvirus A20R proteins. The A20R protein is required for DNA replication, is associated with the processive form of the viral DNA polymerase, and directly interacts with the viral proteins encoded by the D4R, D5R, and H5R open reading frames. A20R may contribute to the assembly or stability of the multiprotein DNA replication complex [].
Probab=21.03 E-value=2.3e+02 Score=28.21 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHccCcccc-cccccCCCeeeccCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeEeeeeCCCc---E
Q 015694 16 GNAFVEQYYHILHQSPGLV-HRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKG---V 91 (402)
Q Consensus 16 g~~FV~~YY~~l~~~p~~L-~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~~~~~~~I~~~d~q~s~~~~---v 91 (402)
+..|-+.||..|+..=... ..||..+=++.+.|.. .-.|.+... .+-..|++++--...+|. .
T Consensus 172 ~~~F~~~dY~~l~~~f~~~~~~f~~~s~c~ik~G~~--------~R~viDf~~-----~~y~~Vk~I~Le~i~~n~~~P~ 238 (334)
T PF05941_consen 172 DTIFTEEDYDALEAYFLKIMDGFYINSLCCIKEGVS--------RRNVIDFYK-----KEYVCVKSIELEQIGDNRFLPK 238 (334)
T ss_pred CcccchhHHHHHHHHHHhhhhcccceeEEEEecCcc--------hhhhhhhcc-----cceEEEEEEEEEEecCCeeeeE
Confidence 3579999999999654443 6778777688888762 334444432 345667777766665654 4
Q ss_pred EEEEEEEEE-eCC----CcccceeEEEEeeEcCCCcEEEEeceE
Q 015694 92 IVLVTGCLT-GKD----NVKKKFTQTFFLAPQDKGGYFVLNDVF 130 (402)
Q Consensus 92 lv~V~G~l~-~~~----~~~r~F~qtF~L~~~~~~~y~V~nDif 130 (402)
+|+-.|... .+| -..|-+.-+||-+..-+ .|.|+.|--
T Consensus 239 iiT~~g~~vlvrdv~hLi~sr~~vgsFV~Vkkk~-~~~iL~d~~ 281 (334)
T PF05941_consen 239 IITKSGDRVLVRDVDHLIRSRARVGSFVVVKKKK-NFLILVDNA 281 (334)
T ss_pred EEeecCCEEEEcchhHHhHhhhccceEEEEEEec-eEEEEccCc
Confidence 455555533 333 13578889998887776 788887543
No 187
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.17 E-value=4.3e+02 Score=23.28 Aligned_cols=55 Identities=20% Similarity=0.246 Sum_probs=40.0
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcC---CCeeEEEEEEcCCC----------Cccc-EEEEEeCCHHHH
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIF---GPIKKNGVQVRSNK----------QGYC-FGFVAFETPGSV 356 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~f---G~I~~~~v~~~~~~----------~~~g-fgFVeF~~~~~a 356 (402)
..+||++.++..+++++.++.-++= +.++.+.+-+.++. .++. |-+|.|++-...
T Consensus 87 ~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~l 155 (161)
T COG5353 87 DGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKEL 155 (161)
T ss_pred CCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchhh
Confidence 4799999999999999999988754 55666665544332 2334 889999886543
Done!