Query 015694
Match_columns 402
No_of_seqs 429 out of 1864
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 17:03:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015694.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015694hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q90_A RAS GTPase-activating p 100.0 9.9E-39 3.4E-43 276.5 14.1 129 9-137 6-139 (140)
2 3ujm_A Rasputin; NTF2-like fol 100.0 3E-37 1E-41 260.4 12.1 118 11-133 2-120 (120)
3 1zo2_A NTF2, nuclear transport 100.0 1.3E-36 4.3E-41 259.7 14.8 123 8-135 7-129 (129)
4 1gy6_A Nuclear transport facto 100.0 2.8E-36 9.5E-41 256.9 14.0 123 9-137 4-126 (127)
5 1gy7_A Nuclear transport facto 100.0 1.2E-35 4E-40 252.4 14.3 119 11-135 4-124 (125)
6 2qiy_A UBP3-associated protein 100.0 4.4E-35 1.5E-39 257.7 14.4 130 8-137 7-151 (154)
7 3nv0_B NTF2-related export pro 100.0 7.7E-34 2.6E-38 248.7 14.5 116 11-134 32-154 (154)
8 1jkg_A P15; NTF2-like domain, 100.0 4.1E-32 1.4E-36 235.1 14.2 119 10-135 11-138 (140)
9 1jkg_B TAP; NTF2-like domain, 99.9 8.2E-22 2.8E-26 186.0 14.1 126 10-137 12-172 (250)
10 1of5_A MRNA export factor MEX6 99.8 3E-21 1E-25 177.8 10.3 125 10-137 8-205 (221)
11 1q40_B MEX67, mRNA export fact 99.8 1.3E-20 4.5E-25 173.4 11.7 126 10-137 11-211 (219)
12 4fxv_A ELAV-like protein 1; RN 99.7 5.7E-18 2E-22 137.3 10.6 80 299-378 16-97 (99)
13 3nv0_A Nuclear RNA export fact 99.7 1.3E-16 4.4E-21 145.6 14.6 123 11-135 11-185 (205)
14 3s8s_A Histone-lysine N-methyl 99.7 5.2E-17 1.8E-21 134.3 9.8 84 300-383 4-89 (110)
15 3s7r_A Heterogeneous nuclear r 99.7 1.6E-16 5.4E-21 124.9 11.0 79 299-377 8-87 (87)
16 2lxi_A RNA-binding protein 10; 99.7 1.8E-17 6.3E-22 132.1 5.1 81 302-382 1-85 (91)
17 2do4_A Squamous cell carcinoma 99.7 2.6E-16 8.8E-21 127.1 11.9 84 299-382 14-98 (100)
18 4f25_A Polyadenylate-binding p 99.7 9.6E-17 3.3E-21 133.5 9.6 81 302-383 5-86 (115)
19 2dgo_A Cytotoxic granule-assoc 99.7 4.5E-16 1.6E-20 128.9 12.5 86 298-383 11-98 (115)
20 2cq0_A Eukaryotic translation 99.7 4E-16 1.4E-20 126.6 11.2 85 299-383 12-98 (103)
21 3bs9_A Nucleolysin TIA-1 isofo 99.7 3.5E-16 1.2E-20 122.7 10.4 80 301-380 5-86 (87)
22 2e5h_A Zinc finger CCHC-type a 99.7 5.9E-16 2E-20 123.3 11.5 79 299-377 13-93 (94)
23 2cq3_A RNA-binding protein 9; 99.7 8E-16 2.8E-20 124.8 12.4 85 298-383 11-96 (103)
24 3md1_A Nuclear and cytoplasmic 99.7 4.3E-16 1.5E-20 121.1 10.3 79 302-380 1-81 (83)
25 2rs2_A Musashi-1, RNA-binding 99.7 2.5E-16 8.7E-21 129.7 9.4 84 300-383 23-107 (109)
26 2khc_A Testis-specific RNP-typ 99.7 9.8E-16 3.4E-20 127.4 13.0 79 299-377 37-117 (118)
27 2cqc_A Arginine/serine-rich sp 99.7 5.6E-16 1.9E-20 123.6 10.8 80 299-378 12-93 (95)
28 2cqi_A Nucleolysin TIAR; RNA r 99.7 8.1E-16 2.8E-20 124.8 11.6 85 298-383 11-96 (103)
29 2dgs_A DAZ-associated protein 99.6 6.3E-16 2.2E-20 124.5 10.8 84 300-383 8-92 (99)
30 2cpz_A CUG triplet repeat RNA- 99.6 5.4E-16 1.9E-20 128.5 10.6 84 300-383 23-108 (115)
31 1p27_B RNA-binding protein 8A; 99.6 5.8E-16 2E-20 126.2 10.6 83 300-382 21-105 (106)
32 2dgx_A KIAA0430 protein; RRM d 99.6 3.9E-16 1.3E-20 125.4 9.3 82 300-383 7-93 (96)
33 2d9p_A Polyadenylate-binding p 99.6 5.4E-16 1.8E-20 125.9 10.1 85 298-383 11-96 (103)
34 3mdf_A Peptidyl-prolyl CIS-tra 99.6 4.8E-16 1.6E-20 121.4 9.3 78 300-377 5-84 (85)
35 1x5u_A Splicing factor 3B subu 99.6 5.3E-16 1.8E-20 126.2 9.9 84 300-383 13-98 (105)
36 2dnh_A Bruno-like 5, RNA bindi 99.6 9.7E-16 3.3E-20 124.7 11.3 85 299-383 12-100 (105)
37 2cqb_A Peptidyl-prolyl CIS-tra 99.6 3.5E-16 1.2E-20 126.7 8.6 85 299-383 9-95 (102)
38 1whw_A Hypothetical protein ri 99.6 6.8E-16 2.3E-20 124.3 10.1 84 300-383 6-91 (99)
39 1s79_A Lupus LA protein; RRM, 99.6 3E-16 1E-20 128.2 8.0 82 299-380 8-89 (103)
40 3p5t_L Cleavage and polyadenyl 99.6 1.3E-16 4.3E-21 126.7 5.6 81 303-383 2-86 (90)
41 2la6_A RNA-binding protein FUS 99.6 8.5E-16 2.9E-20 123.9 10.5 77 301-377 12-98 (99)
42 2ywk_A Putative RNA-binding pr 99.6 5.8E-16 2E-20 123.6 9.4 79 300-378 14-93 (95)
43 2do0_A HnRNP M, heterogeneous 99.6 1.5E-15 5.2E-20 125.4 12.1 84 299-382 12-96 (114)
44 4a8x_A RNA-binding protein wit 99.6 5.4E-16 1.9E-20 121.8 8.9 82 301-382 3-87 (88)
45 3n9u_C Cleavage and polyadenyl 99.6 8E-16 2.7E-20 135.0 10.9 82 300-381 53-138 (156)
46 1x5s_A Cold-inducible RNA-bind 99.6 6.8E-16 2.3E-20 124.9 9.7 85 299-383 9-95 (102)
47 1oo0_B CG8781-PA, drosophila Y 99.6 8.2E-16 2.8E-20 126.3 10.2 85 299-383 23-109 (110)
48 2cqp_A RNA-binding protein 12; 99.6 6.1E-16 2.1E-20 124.3 9.2 82 300-381 13-96 (98)
49 2dng_A Eukaryotic translation 99.6 1.7E-15 5.9E-20 123.0 11.8 83 299-383 12-96 (103)
50 2lkz_A RNA-binding protein 5; 99.6 3.9E-16 1.3E-20 125.6 7.9 78 301-378 8-93 (95)
51 1u6f_A Tcubp1, RNA-binding pro 99.6 3E-15 1E-19 128.1 13.8 85 299-383 39-125 (139)
52 1x5t_A Splicing factor 3B subu 99.6 6.4E-16 2.2E-20 123.6 8.9 83 301-383 4-89 (96)
53 2dnz_A Probable RNA-binding pr 99.6 8.1E-16 2.8E-20 122.8 9.5 83 301-383 4-88 (95)
54 2x1f_A MRNA 3'-END-processing 99.6 8E-16 2.7E-20 123.3 9.2 81 302-382 2-84 (96)
55 2cpf_A RNA binding motif prote 99.6 9E-16 3.1E-20 123.3 9.4 83 300-382 3-90 (98)
56 2cqg_A TDP-43, TAR DNA-binding 99.6 2.3E-15 8E-20 122.1 11.9 83 299-382 12-95 (103)
57 2cq1_A PTB-like protein L; RRM 99.6 1.6E-15 5.6E-20 123.4 10.8 81 298-383 11-94 (101)
58 2cqd_A RNA-binding region cont 99.6 1.8E-15 6.1E-20 125.5 11.2 83 298-380 13-96 (116)
59 2dh8_A DAZ-associated protein 99.6 8.4E-16 2.9E-20 125.1 9.0 84 299-382 13-97 (105)
60 2cph_A RNA binding motif prote 99.6 1.3E-15 4.6E-20 124.2 10.1 85 299-383 12-100 (107)
61 1x4h_A RNA-binding protein 28; 99.6 1.3E-15 4.4E-20 125.1 10.1 84 300-383 13-104 (111)
62 2kxn_B Transformer-2 protein h 99.6 5.8E-16 2E-20 131.6 7.8 84 299-382 43-128 (129)
63 3ulh_A THO complex subunit 4; 99.6 2.2E-15 7.4E-20 123.0 10.9 78 300-377 27-105 (107)
64 2dnm_A SRP46 splicing factor; 99.6 1E-15 3.4E-20 124.3 8.6 83 300-382 11-95 (103)
65 2jrs_A RNA-binding protein 39; 99.6 1.2E-15 4.2E-20 125.4 9.2 81 300-380 24-106 (108)
66 2err_A Ataxin-2-binding protei 99.6 1E-15 3.5E-20 126.0 8.6 81 299-380 26-107 (109)
67 2fy1_A RNA-binding motif prote 99.6 1.6E-15 5.5E-20 126.3 9.9 83 300-382 5-88 (116)
68 1wg5_A Heterogeneous nuclear r 99.6 1.8E-15 6.2E-20 123.3 9.9 81 300-380 13-94 (104)
69 3ns6_A Eukaryotic translation 99.6 3.7E-16 1.3E-20 126.6 5.7 80 301-380 5-93 (100)
70 1uaw_A Mouse-musashi-1; RNP-ty 99.6 4.8E-16 1.6E-20 119.1 5.9 76 303-378 1-77 (77)
71 2dhg_A TRNA selenocysteine ass 99.6 1.1E-15 3.9E-20 124.1 8.5 84 300-383 7-93 (104)
72 2div_A TRNA selenocysteine ass 99.6 1.4E-15 4.8E-20 122.4 8.9 81 300-380 7-94 (99)
73 2dgw_A Probable RNA-binding pr 99.6 4.1E-15 1.4E-19 117.9 11.4 80 300-381 8-88 (91)
74 1wi8_A EIF-4B, eukaryotic tran 99.6 2.9E-15 9.8E-20 121.9 10.7 82 300-383 13-97 (104)
75 2cpy_A RNA-binding protein 12; 99.6 1.6E-15 5.3E-20 125.8 9.3 84 299-382 12-96 (114)
76 1sjq_A Polypyrimidine tract-bi 99.6 6.9E-16 2.4E-20 126.3 7.0 79 300-383 14-95 (105)
77 1wex_A Hypothetical protein (r 99.6 2.5E-15 8.6E-20 122.9 10.3 82 297-383 10-94 (104)
78 2cq4_A RNA binding motif prote 99.6 1.3E-15 4.3E-20 126.1 8.5 82 300-382 23-106 (114)
79 2cpe_A RNA-binding protein EWS 99.6 1.8E-15 6E-20 124.9 9.3 85 299-383 12-106 (113)
80 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 3.5E-15 1.2E-19 127.4 11.4 79 299-377 60-140 (140)
81 3r27_A HnRNP L, heterogeneous 99.6 3.7E-15 1.3E-19 120.9 10.8 76 299-379 18-96 (100)
82 2dgp_A Bruno-like 4, RNA bindi 99.6 1.4E-15 4.8E-20 123.9 8.4 85 299-383 10-99 (106)
83 2db1_A Heterogeneous nuclear r 99.6 2.8E-15 9.7E-20 125.2 10.3 81 300-380 15-98 (118)
84 3ucg_A Polyadenylate-binding p 99.6 3.2E-15 1.1E-19 117.6 9.9 78 301-379 5-84 (89)
85 1x4b_A Heterogeneous nuclear r 99.6 1.9E-15 6.6E-20 125.3 9.0 83 300-382 25-108 (116)
86 2cpi_A CCR4-NOT transcription 99.6 1.5E-15 5E-20 125.4 8.2 85 299-383 12-104 (111)
87 2m2b_A RNA-binding protein 10; 99.6 5.4E-16 1.9E-20 131.8 5.6 83 300-383 21-111 (131)
88 2ek1_A RNA-binding protein 12; 99.6 1E-15 3.4E-20 122.2 6.7 79 300-378 13-93 (95)
89 2ad9_A Polypyrimidine tract-bi 99.6 2.8E-15 9.5E-20 125.5 9.5 80 299-383 28-110 (119)
90 2fc9_A NCL protein; structure 99.6 4.2E-15 1.4E-19 120.1 10.1 83 298-383 11-94 (101)
91 2dgv_A HnRNP M, heterogeneous 99.6 3.5E-15 1.2E-19 118.3 9.2 82 300-382 6-88 (92)
92 2mss_A Protein (musashi1); RNA 99.6 9.1E-16 3.1E-20 117.1 5.6 74 304-377 1-75 (75)
93 3ex7_B RNA-binding protein 8A; 99.6 3.1E-15 1.1E-19 125.8 9.2 85 299-383 19-105 (126)
94 2wbr_A GW182, gawky, LD47780P; 99.6 2.3E-15 7.7E-20 118.6 7.7 71 302-377 7-78 (89)
95 1p1t_A Cleavage stimulation fa 99.6 8E-16 2.7E-20 124.9 5.1 83 301-383 7-91 (104)
96 1wez_A HnRNP H', FTP-3, hetero 99.6 3.7E-15 1.3E-19 121.3 9.1 81 300-381 13-93 (102)
97 2dnn_A RNA-binding protein 12; 99.6 3.5E-15 1.2E-19 123.1 9.0 78 301-379 15-92 (109)
98 1iqt_A AUF1, heterogeneous nuc 99.6 7.4E-16 2.5E-20 117.5 4.5 74 304-377 1-75 (75)
99 1x4d_A Matrin 3; structural ge 99.6 4.3E-15 1.5E-19 121.1 9.1 76 299-379 12-91 (102)
100 2kt5_A RNA and export factor-b 99.6 1.8E-14 6.1E-19 120.9 13.2 83 300-382 33-116 (124)
101 1x4a_A Splicing factor, argini 99.6 1.4E-14 4.8E-19 118.7 12.2 81 300-382 20-101 (109)
102 2xs2_A Deleted in azoospermia- 99.6 2.7E-15 9.2E-20 121.5 7.3 82 301-383 8-89 (102)
103 2hgl_A HNRPF protein, heteroge 99.6 3.6E-15 1.2E-19 127.9 8.1 81 300-380 42-125 (136)
104 2krb_A Eukaryotic translation 99.6 1.9E-15 6.6E-20 117.3 5.6 72 302-374 1-80 (81)
105 1wel_A RNA-binding protein 12; 99.6 5.9E-15 2E-19 124.1 8.7 82 300-381 23-105 (124)
106 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.6E-15 5.6E-20 122.7 5.1 78 301-380 18-98 (100)
107 2nlw_A Eukaryotic translation 99.6 5.3E-15 1.8E-19 120.8 8.0 79 301-380 14-100 (105)
108 2cpj_A Non-POU domain-containi 99.6 8.8E-15 3E-19 117.9 9.2 79 299-382 12-91 (99)
109 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.8E-14 6.2E-19 125.8 11.9 83 300-382 37-121 (156)
110 1x4e_A RNA binding motif, sing 99.6 1.4E-15 4.9E-20 118.9 4.2 76 301-376 4-81 (85)
111 2e5j_A Methenyltetrahydrofolat 99.6 1.4E-14 4.7E-19 116.3 10.2 78 300-381 17-95 (97)
112 2jwn_A Embryonic polyadenylate 99.6 1.1E-14 3.8E-19 122.0 10.0 80 300-380 34-115 (124)
113 1rk8_A CG8781-PA, CG8781-PA pr 99.6 1.5E-14 5.3E-19 127.6 11.3 84 300-383 70-155 (165)
114 2dnp_A RNA-binding protein 14; 99.6 1.2E-14 4.1E-19 115.0 9.4 78 299-383 6-84 (90)
115 2ki2_A SS-DNA binding protein 99.6 1.3E-15 4.3E-20 120.5 3.7 79 303-382 2-82 (90)
116 1x5o_A RNA binding motif, sing 99.6 2E-14 7E-19 118.6 11.2 80 299-378 22-110 (114)
117 2kn4_A Immunoglobulin G-bindin 99.6 1.2E-14 4E-19 127.0 10.1 83 300-382 68-152 (158)
118 2jvo_A Nucleolar protein 3; nu 99.6 8E-15 2.7E-19 120.5 8.5 78 299-383 28-106 (108)
119 1why_A Hypothetical protein ri 99.6 1.5E-14 5.1E-19 116.0 9.8 79 299-382 14-95 (97)
120 2lmi_A GRSF-1, G-rich sequence 99.6 2.8E-15 9.4E-20 122.9 5.4 82 300-381 9-93 (107)
121 2dgt_A RNA-binding protein 30; 99.6 1.9E-14 6.5E-19 114.3 10.1 77 299-382 7-84 (92)
122 2ytc_A PRE-mRNA-splicing facto 99.5 2.4E-14 8.2E-19 111.7 10.5 73 300-377 10-84 (85)
123 2dha_A FLJ20171 protein; RRM d 99.5 5.2E-15 1.8E-19 124.7 7.1 81 300-380 21-105 (123)
124 2a3j_A U1 small nuclear ribonu 99.5 1.1E-14 3.8E-19 123.4 9.2 80 301-382 28-112 (127)
125 2hgm_A HNRPF protein, heteroge 99.5 5.7E-15 1.9E-19 125.0 7.3 79 300-379 40-120 (126)
126 1x4c_A Splicing factor, argini 99.5 2.9E-14 9.9E-19 116.9 11.4 76 301-382 14-95 (108)
127 2xnq_A Nuclear polyadenylated 99.5 1.9E-14 6.4E-19 115.9 10.0 73 300-379 20-94 (97)
128 1x4f_A Matrin 3; structural ge 99.5 1.1E-14 3.9E-19 120.5 8.7 77 299-380 22-102 (112)
129 2dnq_A RNA-binding protein 4B; 99.5 1.4E-14 4.9E-19 114.5 9.0 77 300-383 6-83 (90)
130 3d2w_A TAR DNA-binding protein 99.5 1.1E-14 3.7E-19 115.5 8.0 79 300-383 9-87 (89)
131 2la4_A Nuclear and cytoplasmic 99.5 9.2E-15 3.1E-19 118.1 7.7 74 301-379 26-100 (101)
132 3q2s_C Cleavage and polyadenyl 99.5 9.5E-15 3.2E-19 136.1 8.8 80 301-380 67-150 (229)
133 1x4g_A Nucleolysin TIAR; struc 99.5 1.4E-14 4.9E-19 118.8 8.8 79 300-383 23-102 (109)
134 2cpd_A Apobec-1 stimulating pr 99.5 4.4E-14 1.5E-18 113.7 11.3 77 299-382 12-91 (99)
135 2dis_A Unnamed protein product 99.5 1.1E-14 3.8E-19 119.2 7.8 83 300-382 6-94 (109)
136 2jvr_A Nucleolar protein 3; RN 99.5 9.8E-15 3.4E-19 120.8 7.5 77 301-380 27-105 (111)
137 2fc8_A NCL protein; structure 99.5 3.4E-14 1.2E-18 114.9 10.5 82 299-383 12-95 (102)
138 2lea_A Serine/arginine-rich sp 99.5 6.3E-15 2.2E-19 126.1 6.1 84 300-383 45-130 (135)
139 2dgu_A Heterogeneous nuclear r 99.5 2.8E-14 9.5E-19 115.8 9.7 77 300-383 9-86 (103)
140 1fjc_A Nucleolin RBD2, protein 99.5 1.1E-14 3.9E-19 116.3 7.1 80 299-382 13-93 (96)
141 3lqv_A PRE-mRNA branch site pr 99.5 2.7E-14 9.4E-19 118.0 9.4 81 301-383 7-88 (115)
142 1fj7_A Nucleolin RBD1, protein 99.5 3E-15 1E-19 120.9 3.5 80 301-382 16-97 (101)
143 2cpx_A Hypothetical protein FL 99.5 9.6E-15 3.3E-19 120.7 6.2 84 300-383 23-108 (115)
144 1nu4_A U1A RNA binding domain; 99.5 9.3E-15 3.2E-19 117.0 5.9 81 300-382 6-91 (97)
145 2kvi_A Nuclear polyadenylated 99.5 1.7E-14 5.7E-19 115.7 7.2 77 299-382 7-85 (96)
146 1q42_A MTR2, mRNA transport re 99.5 2.1E-14 7.1E-19 126.2 8.3 102 10-118 23-146 (201)
147 1whx_A Hypothetical protein ri 99.5 1.4E-14 4.7E-19 119.7 6.8 76 300-380 8-84 (111)
148 2hvz_A Splicing factor, argini 99.5 1.6E-14 5.3E-19 116.7 6.3 77 303-383 1-78 (101)
149 1l3k_A Heterogeneous nuclear r 99.5 7.7E-14 2.6E-18 125.0 11.5 82 300-381 11-93 (196)
150 2cqh_A IGF-II mRNA-binding pro 99.5 2.3E-14 7.9E-19 113.9 7.0 77 301-383 7-86 (93)
151 1x5p_A Negative elongation fac 99.5 1.3E-13 4.5E-18 110.6 11.5 76 300-382 13-89 (97)
152 2lcw_A RNA-binding protein FUS 99.2 1.7E-15 5.8E-20 125.8 0.0 86 299-384 4-99 (116)
153 1wf1_A RNA-binding protein RAL 99.5 6.8E-14 2.3E-18 114.9 9.6 73 301-380 26-100 (110)
154 2i2y_A Fusion protein consists 99.5 4.9E-14 1.7E-18 122.2 8.6 77 300-380 71-148 (150)
155 3egn_A RNA-binding protein 40; 99.5 3.4E-14 1.2E-18 122.2 7.4 83 301-383 44-133 (143)
156 2f3j_A RNA and export factor b 99.5 5.5E-14 1.9E-18 125.8 8.6 83 300-382 86-169 (177)
157 2hgn_A Heterogeneous nuclear r 99.5 8.2E-15 2.8E-19 126.1 3.0 83 299-382 43-125 (139)
158 4f02_A Polyadenylate-binding p 99.5 1.1E-13 3.6E-18 127.0 10.5 91 302-392 15-112 (213)
159 2j8a_A Histone-lysine N-methyl 99.5 7.6E-14 2.6E-18 117.3 8.3 77 303-379 3-95 (136)
160 2voo_A Lupus LA protein; RNA-b 99.5 1.3E-13 4.4E-18 125.1 10.5 79 301-379 108-186 (193)
161 3md3_A Nuclear and cytoplasmic 99.5 2.7E-13 9.3E-18 117.7 11.8 78 301-378 86-165 (166)
162 1wg1_A KIAA1579 protein, homol 99.5 9.3E-14 3.2E-18 109.5 8.0 73 301-379 4-77 (88)
163 1fxl_A Paraneoplastic encephal 99.5 3.1E-13 1.1E-17 117.5 11.8 91 302-392 2-97 (167)
164 1b7f_A Protein (SXL-lethal pro 99.5 1.9E-13 6.4E-18 119.3 10.2 91 302-392 3-98 (168)
165 4f02_A Polyadenylate-binding p 99.5 1E-13 3.6E-18 127.0 8.9 79 302-381 103-182 (213)
166 2e5g_A U6 snRNA-specific termi 99.5 1.6E-13 5.3E-18 109.5 8.8 76 301-381 7-83 (94)
167 1l3k_A Heterogeneous nuclear r 99.5 2.3E-13 7.9E-18 121.9 10.9 82 302-383 104-186 (196)
168 2e44_A Insulin-like growth fac 99.5 1.3E-13 4.4E-18 110.1 8.1 77 301-380 14-92 (96)
169 2dnl_A Cytoplasmic polyadenyla 99.5 8.1E-14 2.8E-18 115.4 6.9 76 301-378 7-86 (114)
170 3md3_A Nuclear and cytoplasmic 99.5 1.6E-13 5.5E-18 119.2 9.0 90 303-392 1-96 (166)
171 1wf0_A TDP-43, TAR DNA-binding 99.4 4.5E-14 1.5E-18 111.2 4.6 78 301-383 4-81 (88)
172 2yh0_A Splicing factor U2AF 65 99.4 7.5E-13 2.6E-17 118.7 13.3 84 300-383 112-197 (198)
173 2g4b_A Splicing factor U2AF 65 99.4 3.6E-13 1.2E-17 118.1 10.3 76 302-377 94-171 (172)
174 1sjr_A Polypyrimidine tract-bi 99.4 4.1E-13 1.4E-17 118.2 9.5 76 302-380 46-124 (164)
175 2hzc_A Splicing factor U2AF 65 99.4 2.8E-13 9.7E-18 105.9 7.6 69 301-375 5-85 (87)
176 3zzy_A Polypyrimidine tract-bi 99.4 6E-13 2.1E-17 112.8 10.0 74 302-379 28-105 (130)
177 2cjk_A Nuclear polyadenylated 99.4 1.5E-13 5.3E-18 119.9 6.5 79 302-380 87-166 (167)
178 2qfj_A FBP-interacting repress 99.4 4.4E-13 1.5E-17 121.9 9.7 82 302-383 125-208 (216)
179 3pgw_S U1-70K; protein-RNA com 99.4 6.2E-13 2.1E-17 135.1 11.7 82 301-382 101-184 (437)
180 2cjk_A Nuclear polyadenylated 99.4 2.6E-13 8.8E-18 118.4 7.7 91 301-392 2-96 (167)
181 3tyt_A Heterogeneous nuclear r 99.4 3.9E-13 1.3E-17 123.0 9.1 75 300-378 2-78 (205)
182 2cq2_A Hypothetical protein LO 99.4 3.3E-13 1.1E-17 112.0 7.2 77 301-382 24-108 (114)
183 2bz2_A Negative elongation fac 99.4 4.4E-13 1.5E-17 112.4 8.0 80 300-386 37-117 (121)
184 3beg_B Splicing factor, argini 99.4 2E-13 6.9E-18 113.3 5.8 73 301-379 15-93 (115)
185 3nmr_A Cugbp ELAV-like family 99.4 7.1E-13 2.4E-17 116.2 9.1 77 301-377 94-174 (175)
186 1b7f_A Protein (SXL-lethal pro 99.4 1.7E-12 5.7E-17 113.2 10.8 77 301-377 88-168 (168)
187 2e5i_A Heterogeneous nuclear r 99.4 2.1E-12 7.2E-17 108.8 10.8 73 303-380 26-102 (124)
188 3nmr_A Cugbp ELAV-like family 99.4 1.7E-12 5.7E-17 113.8 10.0 92 301-392 2-104 (175)
189 2qfj_A FBP-interacting repress 99.4 8.4E-13 2.9E-17 120.0 8.1 81 301-381 27-109 (216)
190 2diu_A KIAA0430 protein; struc 99.4 9.4E-13 3.2E-17 104.7 7.2 71 302-381 8-85 (96)
191 3pgw_A U1-A; protein-RNA compl 99.4 9.6E-12 3.3E-16 118.2 15.3 77 298-378 203-281 (282)
192 2pe8_A Splicing factor 45; RRM 99.4 3.5E-12 1.2E-16 104.3 10.5 78 301-378 7-92 (105)
193 1fxl_A Paraneoplastic encephal 99.3 2.6E-12 8.9E-17 111.6 9.9 76 302-377 88-167 (167)
194 3pgw_A U1-A; protein-RNA compl 99.3 3.7E-12 1.3E-16 121.1 10.9 80 300-381 7-91 (282)
195 1fje_B Nucleolin RBD12, protei 99.3 2.3E-12 7.9E-17 113.5 8.5 76 301-380 98-174 (175)
196 3smz_A Protein raver-1, ribonu 99.3 4.7E-12 1.6E-16 120.5 9.7 83 301-383 183-267 (284)
197 2ghp_A U4/U6 snRNA-associated 99.3 9.8E-12 3.4E-16 118.7 11.1 90 298-392 37-126 (292)
198 2ghp_A U4/U6 snRNA-associated 99.3 4.4E-12 1.5E-16 121.2 8.5 80 300-380 208-291 (292)
199 1fje_B Nucleolin RBD12, protei 99.3 1.4E-12 4.7E-17 114.9 4.4 94 299-392 10-108 (175)
200 3smz_A Protein raver-1, ribonu 99.3 1.6E-11 5.4E-16 116.8 12.0 92 302-393 95-194 (284)
201 2adc_A Polypyrimidine tract-bi 99.3 3.8E-12 1.3E-16 117.8 7.4 77 300-380 32-110 (229)
202 2dit_A HIV TAT specific factor 99.3 2.4E-11 8.3E-16 100.1 11.3 78 300-380 13-102 (112)
203 3u1l_A PRE-mRNA-splicing facto 99.3 6E-12 2E-16 117.6 7.5 79 299-382 131-231 (240)
204 1qm9_A Polypyrimidine tract-bi 99.3 3.5E-12 1.2E-16 114.8 5.5 76 301-380 2-79 (198)
205 3sde_A Paraspeckle component 1 99.2 2.7E-11 9.2E-16 114.4 10.3 85 300-392 20-105 (261)
206 1jmt_A Splicing factor U2AF 35 99.2 3.6E-12 1.2E-16 104.0 3.4 71 307-377 20-103 (104)
207 3sde_A Paraspeckle component 1 99.2 3.6E-11 1.2E-15 113.5 9.8 81 302-382 96-181 (261)
208 3tyt_A Heterogeneous nuclear r 99.2 1.5E-11 5.2E-16 112.4 7.0 69 301-370 122-193 (205)
209 2yh0_A Splicing factor U2AF 65 99.2 3.8E-11 1.3E-15 107.5 9.0 74 301-380 3-88 (198)
210 2g4b_A Splicing factor U2AF 65 99.2 4.5E-11 1.6E-15 104.5 8.6 86 301-392 3-103 (172)
211 3v4m_A Splicing factor U2AF 65 99.2 5.1E-11 1.7E-15 97.3 8.1 78 301-378 4-95 (105)
212 2adc_A Polypyrimidine tract-bi 99.2 6.5E-11 2.2E-15 109.5 9.3 75 301-379 150-227 (229)
213 1qm9_A Polypyrimidine tract-bi 99.2 2.7E-11 9.2E-16 108.9 6.4 75 301-379 119-196 (198)
214 2d9o_A DNAJ (HSP40) homolog, s 99.1 2.5E-10 8.5E-15 92.4 10.1 76 302-382 10-92 (100)
215 1of5_B MTR2, YKL186C, mRNA tra 99.1 3E-10 1E-14 98.8 10.2 101 11-118 14-121 (184)
216 3ue2_A Poly(U)-binding-splicin 99.1 2.1E-10 7.2E-15 95.7 8.7 77 301-377 19-106 (118)
217 3tht_A Alkylated DNA repair pr 99.0 7.7E-10 2.6E-14 108.6 8.4 73 300-377 16-96 (345)
218 1owx_A Lupus LA protein, SS-B, 98.9 3.7E-09 1.3E-13 88.2 8.1 74 298-376 14-92 (121)
219 3s6e_A RNA-binding protein 39; 98.9 2.3E-09 7.8E-14 88.8 6.1 74 302-378 7-91 (114)
220 2dnr_A Synaptojanin-1; RRM dom 98.7 3.6E-08 1.2E-12 77.6 7.3 73 300-379 5-85 (91)
221 1ufw_A Synaptojanin 2; RNP dom 98.5 1.5E-07 5.2E-12 74.4 5.0 71 299-376 12-91 (95)
222 3dxb_A Thioredoxin N-terminall 98.4 2.8E-07 9.7E-12 84.4 7.1 63 315-377 142-210 (222)
223 2l9w_A U4/U6 snRNA-associated- 97.7 0.00013 4.3E-09 59.0 8.1 69 302-375 21-95 (117)
224 2dhx_A Poly (ADP-ribose) polym 97.6 0.0002 6.9E-09 57.3 8.3 77 302-385 8-89 (104)
225 4i4k_A Uncharacterized protein 97.1 0.0042 1.4E-07 52.4 10.8 107 15-127 20-134 (143)
226 3gzr_A Uncharacterized protein 96.5 0.047 1.6E-06 46.2 13.2 113 17-135 9-132 (146)
227 3cu3_A Domain of unknown funct 96.5 0.016 5.4E-07 50.1 10.3 113 15-133 17-138 (172)
228 1wey_A Calcipressin 1; structu 96.4 0.0032 1.1E-07 50.4 4.8 74 302-380 5-84 (104)
229 3hx8_A MLR2180 protein, putati 96.4 0.034 1.2E-06 44.7 11.2 115 12-131 4-124 (129)
230 3d9r_A Ketosteroid isomerase-l 96.1 0.029 1E-06 45.6 9.3 114 14-133 11-133 (135)
231 2gxf_A Hypothetical protein YY 95.8 0.065 2.2E-06 44.5 10.1 108 17-129 6-120 (142)
232 1whv_A Poly(A)-specific ribonu 95.6 0.05 1.7E-06 43.0 7.9 54 302-363 16-69 (100)
233 1uw4_A UPF3X; nonsense mediate 95.4 0.071 2.4E-06 41.7 8.1 65 303-367 2-70 (91)
234 3rob_A Uncharacterized conserv 95.1 0.063 2.2E-06 45.1 7.7 110 12-130 15-134 (139)
235 3h51_A Putative calcium/calmod 95.0 0.57 1.9E-05 39.4 13.7 124 3-134 9-141 (156)
236 3b7c_A Uncharacterized protein 95.0 0.43 1.5E-05 38.4 12.3 105 17-128 8-118 (122)
237 1wwh_A Nucleoporin 35, nucleop 95.0 0.067 2.3E-06 43.9 7.2 63 301-369 23-85 (119)
238 3ctr_A Poly(A)-specific ribonu 94.6 0.037 1.3E-06 43.8 4.6 53 303-363 7-59 (101)
239 3gwr_A Putative calcium/calmod 94.5 0.25 8.4E-06 41.6 10.0 108 18-130 12-125 (144)
240 2ux0_A Calcium-calmodulin depe 93.8 0.65 2.2E-05 38.1 11.1 112 16-131 15-135 (143)
241 3pq1_A Poly(A) RNA polymerase; 93.7 0.028 9.6E-07 56.9 2.8 63 302-369 53-115 (464)
242 3f7s_A Uncharacterized NTF2-li 93.2 0.91 3.1E-05 37.2 11.1 113 14-131 8-126 (142)
243 1tp6_A Hypothetical protein PA 93.0 0.65 2.2E-05 38.1 9.7 107 17-129 13-125 (128)
244 3soy_A NTF2-like superfamily p 92.8 0.6 2E-05 39.1 9.4 113 13-129 10-132 (145)
245 2rcd_A Uncharacterized protein 92.1 1.5 5E-05 35.5 10.7 109 13-128 14-122 (129)
246 3jum_A Phenazine biosynthesis 92.0 0.36 1.2E-05 42.6 7.2 96 16-113 43-144 (185)
247 2kn4_A Immunoglobulin G-bindin 91.2 0.2 6.8E-06 42.3 4.5 31 332-363 3-33 (158)
248 2owp_A Hypothetical protein BX 91.1 3.1 0.00011 34.0 11.7 110 13-129 11-122 (129)
249 3bb9_A Putative orphan protein 90.9 0.84 2.9E-05 37.9 8.1 107 15-128 31-145 (148)
250 3p3d_A Nucleoporin 53; structu 90.8 0.36 1.2E-05 40.1 5.5 74 303-377 8-96 (132)
251 3ff0_A Phenazine biosynthesis 90.8 0.65 2.2E-05 40.1 7.4 83 15-101 20-108 (163)
252 3duk_A NTF2-like protein of un 90.5 2.5 8.4E-05 34.4 10.5 107 17-132 15-123 (125)
253 3dm8_A Uncharacterized protein 90.3 1.3 4.3E-05 36.6 8.7 96 17-115 7-111 (143)
254 2r4i_A Uncharacterized protein 89.1 2.8 9.7E-05 32.8 9.6 104 18-128 10-117 (123)
255 3f14_A Uncharacterized NTF2-li 88.3 0.92 3.1E-05 35.8 6.1 90 18-116 4-100 (112)
256 2rfr_A Uncharacterized protein 87.9 2.5 8.5E-05 34.9 8.9 113 15-135 20-144 (155)
257 3mg1_A OCP, orange carotenoid 87.1 2.4 8.1E-05 40.1 8.8 110 15-130 193-306 (323)
258 3b8l_A Uncharacterized protein 87.0 4.1 0.00014 34.0 9.9 120 13-135 27-154 (163)
259 3h3h_A Uncharacterized snoal-l 86.7 0.77 2.6E-05 36.7 4.8 65 15-81 9-82 (122)
260 3er7_A Uncharacterized NTF2-li 86.2 0.47 1.6E-05 39.4 3.2 58 18-80 6-71 (131)
261 2l08_A Regulator of nonsense t 86.1 0.67 2.3E-05 36.5 3.9 66 302-367 9-78 (97)
262 3gzb_A Putative snoal-like pol 85.3 1.3 4.5E-05 36.6 5.3 79 17-103 23-104 (154)
263 3cnx_A Uncharacterized protein 85.1 4.9 0.00017 34.7 9.4 110 17-132 15-155 (170)
264 2chc_A Protein RV3472; hypothe 84.7 5.6 0.00019 33.4 9.6 112 15-133 15-132 (170)
265 1nww_A Limonene-1,2-epoxide hy 84.4 8.1 0.00028 31.4 10.3 51 16-70 24-75 (149)
266 3fsd_A NTF2-like protein of un 84.4 6 0.0002 32.0 9.3 106 17-128 17-128 (134)
267 3blz_A NTF2-like protein of un 84.3 13 0.00043 29.8 11.2 110 16-134 14-126 (128)
268 3a76_A Gamma-hexachlorocyclohe 84.3 4.9 0.00017 34.3 9.1 114 15-133 32-154 (176)
269 3fka_A Uncharacterized NTF-2 l 83.7 3.9 0.00013 32.9 7.7 104 17-132 12-119 (120)
270 3dxo_A Uncharacterized snoal-l 83.1 6.9 0.00024 31.1 9.0 64 17-85 6-77 (121)
271 4h3u_A Hypothetical protein; s 82.9 6.2 0.00021 32.8 9.0 60 18-80 29-91 (158)
272 3en8_A Uncharacterized NTF-2 l 82.2 4.6 0.00016 32.7 7.7 78 16-101 7-85 (128)
273 3fh1_A Uncharacterized NTF2-li 81.6 6 0.00021 31.6 8.2 69 13-81 16-86 (129)
274 1ohp_A Steroid delta-isomerase 81.4 4.9 0.00017 31.0 7.4 52 16-70 7-59 (125)
275 3ff2_A Uncharacterized cystati 81.0 2.7 9.1E-05 33.1 5.7 62 17-81 5-69 (117)
276 3hk4_A MLR7391 protein; NTF2-l 80.7 7 0.00024 32.2 8.4 97 17-117 23-124 (136)
277 3k0z_A Putative polyketide cyc 80.6 6.5 0.00022 32.9 8.3 62 16-81 36-100 (159)
278 1s5a_A Hypothetical protein YE 80.5 12 0.00042 30.1 9.9 55 15-69 11-67 (150)
279 3i0y_A Putative polyketide cyc 79.0 15 0.0005 29.3 9.8 51 16-70 10-61 (140)
280 3dmc_A NTF2-like protein; stru 78.4 14 0.00046 30.0 9.4 60 9-69 7-67 (134)
281 3ebt_A Uncharacterized NTF2-li 77.3 9.1 0.00031 30.2 7.9 65 17-81 6-76 (132)
282 3f7x_A Putative polyketide cyc 76.4 20 0.00069 29.5 10.1 51 16-70 22-73 (151)
283 3ehc_A Snoal-like polyketide c 76.4 3.7 0.00013 32.7 5.3 71 17-100 6-79 (128)
284 1sjw_A Nogalonic acid methyl e 75.8 16 0.00054 29.3 9.1 63 17-82 5-71 (144)
285 3ec9_A Uncharacterized NTF2-li 75.4 19 0.00064 28.8 9.5 65 17-81 15-83 (140)
286 1z1s_A Hypothetical protein PA 75.0 21 0.00071 29.7 9.9 54 17-70 26-81 (163)
287 2a15_A Hypothetical protein RV 74.8 27 0.00092 27.7 10.3 54 16-69 9-67 (139)
288 2i2y_A Fusion protein consists 74.8 1.5 5.1E-05 36.5 2.5 38 341-379 11-50 (150)
289 3g8z_A Protein of unknown func 74.6 6.6 0.00023 32.3 6.5 54 16-69 22-76 (148)
290 3g0k_A Putative membrane prote 74.4 15 0.00052 30.3 8.8 78 12-100 25-106 (148)
291 2gex_A SNOL; alpha+beta barrel 74.1 34 0.0012 27.8 11.0 61 16-81 6-69 (152)
292 2bng_A MB2760; epoxide hydrola 74.1 13 0.00044 30.3 8.2 64 14-81 15-80 (149)
293 3f9s_A Putative polyketide cyc 72.3 12 0.00042 30.2 7.6 66 16-82 8-78 (146)
294 2gey_A ACLR protein; alpha+bet 71.3 29 0.001 28.5 9.9 61 16-82 6-69 (158)
295 2f86_B Hypothetical protein K1 71.0 23 0.00077 29.3 9.0 108 17-130 15-130 (143)
296 3ke7_A Putative ketosteroid is 70.3 25 0.00086 28.8 9.0 101 25-132 25-129 (134)
297 2f99_A Aklanonic acid methyl e 70.1 33 0.0011 28.0 9.9 64 16-82 13-80 (153)
298 3kkg_A Putative snoal-like pol 66.7 5.7 0.00019 32.4 4.3 63 16-82 11-79 (146)
299 2rgq_A Domain of unknown funct 65.9 51 0.0017 26.5 11.6 111 15-132 11-127 (144)
300 1tuh_A BAL32A, hypothetical pr 65.2 14 0.00049 30.3 6.6 67 15-81 30-100 (156)
301 3ef8_A Putative scyalone dehyd 64.5 47 0.0016 27.0 9.7 109 17-132 14-132 (150)
302 1oh0_A Steroid delta-isomerase 64.4 30 0.001 26.9 8.2 53 14-69 7-60 (131)
303 3d45_A Poly(A)-specific ribonu 61.7 20 0.00068 36.4 8.0 54 302-363 440-493 (507)
304 3fgy_A Uncharacterized NTF2-li 61.5 7.7 0.00026 30.9 4.1 54 16-69 7-61 (135)
305 2k54_A Protein ATU0742; protei 57.5 46 0.0016 25.7 8.2 91 16-115 5-101 (123)
306 3f40_A Uncharacterized NTF2-li 53.5 23 0.00078 27.8 5.6 50 16-70 8-58 (114)
307 3grd_A Uncharacterized NTF2-su 51.8 6.5 0.00022 31.3 2.0 81 17-100 7-91 (134)
308 3rga_A Epoxide hydrolase; NTF2 49.3 98 0.0033 28.4 10.1 56 12-70 136-192 (283)
309 3rga_A Epoxide hydrolase; NTF2 45.2 56 0.0019 30.1 7.7 51 16-69 8-59 (283)
310 3ub1_A ORF13-like protein; NTF 41.5 55 0.0019 30.1 6.8 87 15-127 156-245 (261)
311 3cwz_B RAB6IP1, RAB6-interacti 39.3 28 0.00097 34.0 4.7 33 14-46 176-217 (384)
312 3g16_A Uncharacterized protein 37.7 27 0.00093 29.5 3.8 56 13-70 9-66 (156)
313 3mso_A Steroid delta-isomerase 35.9 1.7E+02 0.0058 23.5 10.6 52 15-69 10-62 (143)
314 3f8h_A Putative polyketide cyc 35.2 1.8E+02 0.006 23.5 8.6 48 18-69 22-70 (150)
315 3lyg_A NTF2-like protein of un 30.3 2.1E+02 0.0072 22.9 8.2 50 19-71 7-61 (120)
316 3ts2_A Protein LIN-28 homolog 28.5 9.3 0.00032 32.2 -0.7 28 317-351 2-29 (148)
317 3ejv_A Uncharacterized protein 28.3 1.5E+02 0.005 25.1 7.1 72 13-84 25-106 (179)
318 3f8x_A Putative delta-5-3-keto 27.3 71 0.0024 26.4 4.7 54 13-69 19-73 (148)
319 4e8u_A Putative uncharacterize 22.3 1.5E+02 0.0052 25.4 5.8 46 314-361 33-81 (172)
320 2g0c_A ATP-dependent RNA helic 20.5 1.5E+02 0.005 21.0 4.7 58 312-377 11-74 (76)
No 1
>3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} SCOP: d.17.4.0
Probab=100.00 E-value=9.9e-39 Score=276.48 Aligned_cols=129 Identities=36% Similarity=0.668 Sum_probs=113.7
Q ss_pred CCCHHHHHHHHHHHHHHHHccCcccccccccCCCeeeccCC--CCccc-eeccHHHHHHHHhcCCCCcceEEEeeeEeee
Q 015694 9 APSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDS--NGSMT-TVTTMKAINDRILSLNYEDYTAEIKTADAQD 85 (402)
Q Consensus 9 ~~~~~~vg~~FV~~YY~~l~~~p~~L~~fY~~~S~l~~~~~--~~~~~-~~~g~~~I~~~i~sl~~~~~~~~I~~~d~q~ 85 (402)
+|++++||++||+|||++|+++|+.||+||+++|+|+|.+. +|++. .+.|+++|.++|++||+++|+++|.++|||+
T Consensus 6 ~p~~~~vg~~Fv~~YY~~ld~~r~~L~~~Y~~~S~l~~~~~~~ng~~~~~~~G~~~I~~~l~~Lp~~~~~~~I~tvD~Qp 85 (140)
T 3q90_A 6 KPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHA 85 (140)
T ss_dssp --CHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEC----------CCCEEHHHHHHHHHHHTCCCSCEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhcCHHHHHhhcccCceEEEEccCCCCceeecccCHHHHHHHHHhCCCccceEEEEeEEEEE
Confidence 58999999999999999999999999999999999999654 46554 6899999999999999999999999999999
Q ss_pred eCCCcEEEEEEEEEEeCCCcccceeEEEEeeEcC--CCcEEEEeceEEeecccc
Q 015694 86 SYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQD--KGGYFVLNDVFRFVEENE 137 (402)
Q Consensus 86 s~~~~vlv~V~G~l~~~~~~~r~F~qtF~L~~~~--~~~y~V~nDifr~~~~~~ 137 (402)
++++||||+|+|.|+.++++.|+|+|+|+|+|++ +++|||+||||||+|+++
T Consensus 86 s~~~gilI~V~G~l~~~~~~~~~F~QtF~L~p~~~~~~~y~V~nDifR~~de~~ 139 (140)
T 3q90_A 86 TLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVF 139 (140)
T ss_dssp CGGGCEEEEEEEEEECTTCCCEEEEEEEEEEECSSSTTCEEEEEEEEEEGGGC-
T ss_pred eCCCCEEEEEEEEEecCCCCccEEEEEEEEeecCCCCCCEEEEEEEeEeehhhc
Confidence 9999999999999999999999999999999997 359999999999999986
No 2
>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster}
Probab=100.00 E-value=3e-37 Score=260.37 Aligned_cols=118 Identities=41% Similarity=0.682 Sum_probs=108.9
Q ss_pred CHHHHHHHHHHHHHHHHccCcccccccccCCCeeec-cCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeEeeeeCCC
Q 015694 11 SAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSR-PDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEK 89 (402)
Q Consensus 11 ~~~~vg~~FV~~YY~~l~~~p~~L~~fY~~~S~l~~-~~~~~~~~~~~g~~~I~~~i~sl~~~~~~~~I~~~d~q~s~~~ 89 (402)
++++||++||++||++|+++|+.|++||+++|.++| ++. .+.|+++|.++|++|||++|+|+|.++|||+++++
T Consensus 2 s~~~vg~~Fv~~YY~~ld~~r~~L~~~Y~~~s~~~~~~~~-----~~~G~~~I~~~l~~Lpf~~~~~~I~t~D~Qp~~~~ 76 (120)
T 3ujm_A 2 SHMSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHGESK-----LVVGQREIHNRIQQLNFNDCHAKISQVDAQATLGN 76 (120)
T ss_dssp --CCHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTCC-----CEESHHHHHHHHHHHCCCSCEEEEEEEEEEEEGGG
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHhhhecccceEEEcCCc-----EecCHHHHHHHHHcCCCcceEEEEecccceEcCCC
Confidence 578899999999999999999999999999986665 444 79999999999999999999999999999999999
Q ss_pred cEEEEEEEEEEeCCCcccceeEEEEeeEcCCCcEEEEeceEEee
Q 015694 90 GVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRFV 133 (402)
Q Consensus 90 ~vlv~V~G~l~~~~~~~r~F~qtF~L~~~~~~~y~V~nDifr~~ 133 (402)
||||+|+|.|+.++++.|+|+|+|+|+|+++++|||+||||||+
T Consensus 77 gili~V~G~l~~~~~~~r~F~QtF~L~p~~~~~y~V~nDifR~q 120 (120)
T 3ujm_A 77 GVVVQVTGELSNDGQPMRRFTQTFVLAAQSPKKYYVHNDIFRYQ 120 (120)
T ss_dssp EEEEEEEEEEESTTCCCEEEEEEEEEEECSTTCEEEEEEEEEEC
T ss_pred CEEEEEEEEEEeCCCCCceEEEEEEEEEcCCCCEEEEEEEEecC
Confidence 99999999999999889999999999999755999999999995
No 3
>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2
Probab=100.00 E-value=1.3e-36 Score=259.68 Aligned_cols=123 Identities=31% Similarity=0.521 Sum_probs=116.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHccCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeEeeeeC
Q 015694 8 PAPSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSY 87 (402)
Q Consensus 8 ~~~~~~~vg~~FV~~YY~~l~~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~~~~~~~I~~~d~q~s~ 87 (402)
.+|++.+||++||++||++|+++|+.|++||+++|+|+|+|. .+.|+++|.++|.+||+++|+|+|.++|||++.
T Consensus 7 ~~p~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~ls~~g~-----~~~G~~~I~~~l~~Lp~~~~~h~i~t~D~qp~~ 81 (129)
T 1zo2_A 7 LNPQFDQIGKQFVQHYYQTFQTNRPALGGLYGPQSMLTWEDT-----QFQGQANIVNKFNSLNFQRVQFEITRVDCQPSP 81 (129)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHHCCSCEEEEEEEEEEEECT
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEECCc-----eeccHHHHHHHHHhCCCcceEEEEEEEEEEEeC
Confidence 378999999999999999999999999999999999999986 799999999999999999999999999999999
Q ss_pred CCcEEEEEEEEEEeCCCcccceeEEEEeeEcCCCcEEEEeceEEeecc
Q 015694 88 EKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRFVEE 135 (402)
Q Consensus 88 ~~~vlv~V~G~l~~~~~~~r~F~qtF~L~~~~~~~y~V~nDifr~~~~ 135 (402)
+|||||+|+|.|+.++++.|+|+|+|+|+|+++++|||+||||||+++
T Consensus 82 ~~gilI~V~G~~~~~~~~~~~F~qtF~L~p~~~~~y~I~nD~fR~~~~ 129 (129)
T 1zo2_A 82 NNGSIVFVTGDVRIDDGQPLKFSQVFNLMPSGNGGFMIFNDLFRLNLG 129 (129)
T ss_dssp BSSEEEEEEEEEEETTCCCEEEEEEEEEEECSSSCEEEEEEEEEEC--
T ss_pred CCcEEEEEEEEEEECCCCcceEEEEEEEEEcCCCcEEEEeEEEEEecC
Confidence 999999999999999999999999999999985599999999999863
No 4
>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A 1jb4_A 1jb2_A 1qma_A
Probab=100.00 E-value=2.8e-36 Score=256.94 Aligned_cols=123 Identities=24% Similarity=0.429 Sum_probs=118.2
Q ss_pred CCCHHHHHHHHHHHHHHHHccCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeEeeeeCC
Q 015694 9 APSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYE 88 (402)
Q Consensus 9 ~~~~~~vg~~FV~~YY~~l~~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~~~~~~~I~~~d~q~s~~ 88 (402)
+|++++||++||++||++|+++|+.|++||+++|+|+|+|. .+.|+++|.++|.+||+++|+|+|.++|||++.+
T Consensus 4 ~p~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~ls~~g~-----~~~G~~~I~~~l~~Lp~~~~~h~i~t~d~qp~~~ 78 (127)
T 1gy6_A 4 KPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQ-----QFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPD 78 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHCSCSCEEEEEEEEEEEECTT
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEECCc-----cccCHHHHHHHHHhCCCcceEEEEEEEEEEEeCC
Confidence 67899999999999999999999999999999999999987 7999999999999999999999999999999999
Q ss_pred CcEEEEEEEEEEeCCCcccceeEEEEeeEcCCCcEEEEeceEEeecccc
Q 015694 89 KGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRFVEENE 137 (402)
Q Consensus 89 ~~vlv~V~G~l~~~~~~~r~F~qtF~L~~~~~~~y~V~nDifr~~~~~~ 137 (402)
+||||+|+|.|+.++++.|+|+|+|+|+|+++ +|||+||||||+++++
T Consensus 79 ~~ili~V~G~~~~~~~~~~~F~qtF~L~p~~~-~~~I~nD~fr~~~~~~ 126 (127)
T 1gy6_A 79 SCIISMVVGQLKADEDPIMGFHQMFLLKNIND-AWVCTNDMFRLALHNF 126 (127)
T ss_dssp SCEEEEEEEEEEETTSCCEEEEEEEEEEEETT-EEEEEEEEEEECCCCC
T ss_pred CcEEEEEEEEEEECCCCcceEeEEEEEEEeCC-EEEEEEEEEEEEcccc
Confidence 99999999999999999999999999999995 9999999999999865
No 5
>1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A
Probab=100.00 E-value=1.2e-35 Score=252.38 Aligned_cols=119 Identities=27% Similarity=0.499 Sum_probs=113.7
Q ss_pred CHHHHHHHHHHHHHHHHccCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeEeeeeC-CC
Q 015694 11 SAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSY-EK 89 (402)
Q Consensus 11 ~~~~vg~~FV~~YY~~l~~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~~~~~~~I~~~d~q~s~-~~ 89 (402)
++++||++||++||++|+++|+.|++||+++|+|+|+|. .+.|+++|.++|.+|||++|+|+|.++|||++. +|
T Consensus 4 ~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~~s~~g~-----~~~G~~~I~~~l~~Lp~~~~~h~i~t~D~qp~~~~~ 78 (125)
T 1gy7_A 4 DFNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFETS-----QLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPYG 78 (125)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHSCCSCEEEEEEEEEEEESSTTS
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHhhCCCcEEEECCc-----EecCHHHHHHHHHhCCCcceEEEEEEEEEEEecCCC
Confidence 589999999999999999999999999999999999987 799999999999999999999999999999995 58
Q ss_pred cEEEEEEEEEEeCCC-cccceeEEEEeeEcCCCcEEEEeceEEeecc
Q 015694 90 GVIVLVTGCLTGKDN-VKKKFTQTFFLAPQDKGGYFVLNDVFRFVEE 135 (402)
Q Consensus 90 ~vlv~V~G~l~~~~~-~~r~F~qtF~L~~~~~~~y~V~nDifr~~~~ 135 (402)
||||+|+|.|+.+++ +.|+|+|+|+|+|+++ +|||+||||||+++
T Consensus 79 gili~V~G~~~~~~~~~~~~F~qtF~L~p~~~-~~~I~nD~fr~~~~ 124 (125)
T 1gy7_A 79 DVLVMITGDLLIDEEQNPQRFSQVFHLIPDGN-SYYVFNDIFRLNYS 124 (125)
T ss_dssp CEEEEEEEEEEETTCSSCEEEEEEEEEEEETT-EEEEEEEEEEEECC
T ss_pred eEEEEEEEEEEECCCCCCccEeEEEEEEEeCC-EEEEEEEEEEEecC
Confidence 999999999999887 8999999999999997 99999999999975
No 6
>2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A
Probab=100.00 E-value=4.4e-35 Score=257.71 Aligned_cols=130 Identities=23% Similarity=0.360 Sum_probs=116.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHccCcccccccccCCCeeeccCCCCc----------cceeccHHHHHHHHhcC--CCCcce
Q 015694 8 PAPSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGS----------MTTVTTMKAINDRILSL--NYEDYT 75 (402)
Q Consensus 8 ~~~~~~~vg~~FV~~YY~~l~~~p~~L~~fY~~~S~l~~~~~~~~----------~~~~~g~~~I~~~i~sl--~~~~~~ 75 (402)
..|++++||++||++||++|+++|+.|++||+++|+|+|++..+. ...+.|+++|.++|.+| ||++|+
T Consensus 7 ~~p~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~~s~~~~~~~s~~~~~d~~~~~~~~G~~~I~~~l~~L~~pf~~~~ 86 (154)
T 2qiy_A 7 MGVTVQDICFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVRSLK 86 (154)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEEECTTCC----CCSSCCEEEEESHHHHHHHHHHTHHHHTTEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEEccccccccccccccccceEeeCHHHHHHHHHhccCCCCceE
Confidence 357899999999999999999999999999999999999843211 34789999999999999 999999
Q ss_pred EEEeeeEeeeeCC--CcEEEEEEEEEEeCCCcccceeEEEEeeEcCC-CcEEEEeceEEeecccc
Q 015694 76 AEIKTADAQDSYE--KGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDK-GGYFVLNDVFRFVEENE 137 (402)
Q Consensus 76 ~~I~~~d~q~s~~--~~vlv~V~G~l~~~~~~~r~F~qtF~L~~~~~-~~y~V~nDifr~~~~~~ 137 (402)
|+|.++|||++.+ +||||+|+|.|+.++++.|+|+|||+|+|+++ ++|||+||||||+++++
T Consensus 87 h~I~s~D~q~~~~~~~~ilI~V~G~~~~~~~~~r~F~qtFvL~p~~~~~~y~I~ND~fr~~~~~~ 151 (154)
T 2qiy_A 87 LKLDTIDFQYTGHLHKSILIMATGEMFWTGTPVYKFCQTFILLPSSNGSTFDITNDIIRFISNSF 151 (154)
T ss_dssp EEEEEEEEEEESGGGCEEEEEEEEEEEETTCCCEEEEEEEEEEECC---CEEEEEEEEEEECC--
T ss_pred EEEEEEEEEEccCCCCEEEEEEEEEEEECCCCCceEEEEEEEEEeCCCCcEEEEEEEEEEEccee
Confidence 9999999999987 99999999999999999999999999999986 68999999999999987
No 7
>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=100.00 E-value=7.7e-34 Score=248.66 Aligned_cols=116 Identities=24% Similarity=0.379 Sum_probs=109.8
Q ss_pred CHHHHHHHHHHHHHHHHccCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeEeeeeC---
Q 015694 11 SAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSY--- 87 (402)
Q Consensus 11 ~~~~vg~~FV~~YY~~l~~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~~~~~~~I~~~d~q~s~--- 87 (402)
.+.+||++||++||++|+++|+.|++||.++|+|+|+|. .+.|+++|.++|++||+ |+++|.++|||++.
T Consensus 32 ~a~~vg~~FV~qYY~~~d~~R~~L~~fY~d~S~ls~~g~-----~~~G~~~I~~~l~~Lp~--~~h~I~s~D~qp~~~~~ 104 (154)
T 3nv0_B 32 ELCNESKKFMDVYYDVMDRKREKIGFLYTQVSNAVWNGN-----PINGYDSICEFMKALPS--TQHDIQSLDAQRLPEGV 104 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHSCC--EEEEEEEEEEEECCTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHhcCCcEEEECCe-----ecccHHHHHHHHHhCCC--eEEEEEEEEEEEcCccc
Confidence 456799999999999999999999999999999999987 79999999999999995 79999999999998
Q ss_pred ----CCcEEEEEEEEEEeCCCcccceeEEEEeeEcCCCcEEEEeceEEeec
Q 015694 88 ----EKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRFVE 134 (402)
Q Consensus 88 ----~~~vlv~V~G~l~~~~~~~r~F~qtF~L~~~~~~~y~V~nDifr~~~ 134 (402)
++||||+|+|.|+.++++.|+|+|+|+|+|+++ +|||+||||||+|
T Consensus 105 ~~q~~~~ilI~V~G~l~~~~~~~r~F~QtFvL~p~~~-~y~V~NDifR~vd 154 (154)
T 3nv0_B 105 TGDMSGGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDG-KYKVKSDRFRYVD 154 (154)
T ss_dssp CGGGTTCEEEEEEEEEEETTSCCEEEEEEEEEEEETT-EEEEEEEEEEECC
T ss_pred cCCCCCeEEEEEEEEEEECCCCceeEEEEEEEEEeCC-EEEEEeeEEEecC
Confidence 679999999999999888999999999999986 9999999999986
No 8
>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A
Probab=99.98 E-value=4.1e-32 Score=235.06 Aligned_cols=119 Identities=23% Similarity=0.380 Sum_probs=110.6
Q ss_pred CCHHHHHHHHHHHHHHHHccCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeEeeeeC--
Q 015694 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSY-- 87 (402)
Q Consensus 10 ~~~~~vg~~FV~~YY~~l~~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~~~~~~~I~~~d~q~s~-- 87 (402)
..+.+||++||+|||++|+++|+.|++||+++|+|+|+|. .+.|+++|.++|.+||++ +|+|.++|||++.
T Consensus 11 ~~a~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~ls~~g~-----~~~G~~~I~~~l~~Lp~~--~h~i~s~d~q~~~~~ 83 (140)
T 1jkg_A 11 DQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGN-----AVSGQESLSEFFEMLPSS--EFQISVVDCQPVHDE 83 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHSCCE--EEEEEEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHhcCCCcEEEECCe-----eecCHHHHHHHHHhCCCc--eeEEEEEEEEEcCCc
Confidence 3578899999999999999999999999999999999986 799999999999999987 5899999999996
Q ss_pred ----CCcEEEEEEEEEEeCCCcccceeEEEEeeEcC---CCcEEEEeceEEeecc
Q 015694 88 ----EKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQD---KGGYFVLNDVFRFVEE 135 (402)
Q Consensus 88 ----~~~vlv~V~G~l~~~~~~~r~F~qtF~L~~~~---~~~y~V~nDifr~~~~ 135 (402)
++||||+|+|.|+.++++.|+|+|+|+|+|++ +++|||+||||||+++
T Consensus 84 ~~~~~~~ilI~V~G~~~~~~~~~r~F~qtF~L~p~~~p~~~~~~I~nD~frl~~~ 138 (140)
T 1jkg_A 84 ATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCFRFQDW 138 (140)
T ss_dssp TSTTCCEEEEEEEEEEEETTSCCEEEEEEEEEEEECCSSSCEEEEEEEEEEETTT
T ss_pred ccCCCCeEEEEEEEEEEECCCCceeeeEEEEEEecCCCCCCeEEEEeeEEEeecC
Confidence 58999999999999998999999999999974 2589999999999986
No 9
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=99.87 E-value=8.2e-22 Score=186.03 Aligned_cols=126 Identities=17% Similarity=0.212 Sum_probs=108.7
Q ss_pred CCHHHHHHHHHHHHHHHHccC-cccccccccCCCeeeccCCCCc---------------------------c-ceeccHH
Q 015694 10 PSAQVVGNAFVEQYYHILHQS-PGLVHRFYQDSSLLSRPDSNGS---------------------------M-TTVTTMK 60 (402)
Q Consensus 10 ~~~~~vg~~FV~~YY~~l~~~-p~~L~~fY~~~S~l~~~~~~~~---------------------------~-~~~~g~~ 60 (402)
+.+..+|..||++||+++|++ |..|.++|+++|+|+|...... + ....|.+
T Consensus 12 ~~~~~~~~~Fv~~Yy~~fD~~~R~~L~~lY~~~s~fS~~~~~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~~~~G~~ 91 (250)
T 1jkg_B 12 ENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRL 91 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCGGGGGGTEEEEEEEEEECCCC------CCCHHHHTTBCCTTTCCCHHHHHHHSEESHH
T ss_pred HHHHHHHHHHHHHHHHHHCcCcHHHHHHhhCcCcEEEEEeCCCCCCccccchhhhhhhccchhcccchhhhhhhhccCHH
Confidence 456789999999999999998 9999999999999998743100 0 2578999
Q ss_pred HHHHHHhcCCCCcceEEEe--eeEeeeeCCCcEEEEEEEEEEeCC----CcccceeEEEEeeEcCCCcEEEEeceEEeec
Q 015694 61 AINDRILSLNYEDYTAEIK--TADAQDSYEKGVIVLVTGCLTGKD----NVKKKFTQTFFLAPQDKGGYFVLNDVFRFVE 134 (402)
Q Consensus 61 ~I~~~i~sl~~~~~~~~I~--~~d~q~s~~~~vlv~V~G~l~~~~----~~~r~F~qtF~L~~~~~~~y~V~nDifr~~~ 134 (402)
+|.++|.+|| .++|.+. ++|+|+..+++|+|+|+|.++..+ +..|.|+|||+|.|.++|+|+|+||+||+.+
T Consensus 92 ~I~~~l~~LP--~t~H~~~s~~vD~~~~~~~~i~i~V~G~f~e~~~~~~~~~r~F~rtFvL~p~~~~~~~I~ND~l~l~~ 169 (250)
T 1jkg_B 92 NVVAFLNELP--KTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRN 169 (250)
T ss_dssp HHHHHHTTSC--CEEECGGGCEEEEEEECSSCEEEEEEEEEEECSSTTTTCEEEEEEEEEEEECTTSSEEEEEEEEEEEE
T ss_pred HHHHHHHhCC--CeeEeccceEEeeeecCCCEEEEEEEEEEEECCCCCCCCceeeEEEEEEEECCCCcEEEEeeEEEEEC
Confidence 9999999999 5578877 899999988899999999999865 5789999999999976669999999999987
Q ss_pred ccc
Q 015694 135 ENE 137 (402)
Q Consensus 135 ~~~ 137 (402)
...
T Consensus 170 ~s~ 172 (250)
T 1jkg_B 170 ASS 172 (250)
T ss_dssp CCH
T ss_pred CCh
Confidence 653
No 10
>1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=99.84 E-value=3e-21 Score=177.78 Aligned_cols=125 Identities=12% Similarity=0.225 Sum_probs=104.5
Q ss_pred CCHHHHHHHHHHHHHHHHccCcccccccccCCCeeeccCCCCc---------------------------------c-ce
Q 015694 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGS---------------------------------M-TT 55 (402)
Q Consensus 10 ~~~~~vg~~FV~~YY~~l~~~p~~L~~fY~~~S~l~~~~~~~~---------------------------------~-~~ 55 (402)
.....++..||++||+++|++|..|..||+++|+|+|...... + ..
T Consensus 8 ~~~~~~~~~Fv~~Yy~~fDsdR~~L~~lY~~~S~fS~s~~~~~p~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~~~l 87 (221)
T 1of5_A 8 DALGQSSTDFATNFLNLWDNNREQLLNLYSPQSQFSVSVDSTIPPSTVTDSDQTPAFGYYMSSSRNISKVSSEKSIQQRL 87 (221)
T ss_dssp CTTCHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEEEECCC--------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHhhCcCcEEEEEecCCCCcccccccccccchhhhhhhccchhcccchhhhhhhh
Confidence 4567899999999999999999999999999999988663110 0 25
Q ss_pred eccHHHHHHHHhcCCCCcceEEE------eeeEeeeeCC-CcEEEEEEEEEEeCCC------------------------
Q 015694 56 VTTMKAINDRILSLNYEDYTAEI------KTADAQDSYE-KGVIVLVTGCLTGKDN------------------------ 104 (402)
Q Consensus 56 ~~g~~~I~~~i~sl~~~~~~~~I------~~~d~q~s~~-~~vlv~V~G~l~~~~~------------------------ 104 (402)
..|.++|.++|.+|| .++|.| .++|||+... +||+|+|+|.++..+.
T Consensus 88 ~~G~~~I~~~l~~LP--kT~H~l~~~~~s~~vD~~~~~~~~~i~itV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (221)
T 1of5_A 88 SIGQESINSIFKTLP--KTKHHLQEQPNEYSMETISYPQINGFVITLHGFFEETGKPELESNKKTGKNNYQKNRRYNHGY 165 (221)
T ss_dssp CBHHHHHHHHHHHSC--CEEECTTTSGGGCEEEEEEEGGGTEEEEEEEEEEEEC--------------------------
T ss_pred ccCHHHHHHHHHhCC--CeeEecccCCCceEEEeEEcCCCCeEEEEEEEEEEECCCcccccccccccccccccccccccc
Confidence 679999999999999 568999 5999999865 6999999999987554
Q ss_pred --------cccceeEEEEeeEcCCCcEEEEeceEEeecccc
Q 015694 105 --------VKKKFTQTFFLAPQDKGGYFVLNDVFRFVEENE 137 (402)
Q Consensus 105 --------~~r~F~qtF~L~~~~~~~y~V~nDifr~~~~~~ 137 (402)
..|.|+|||+|.|. +|+|+|+||+||+.....
T Consensus 166 ~~~~~~~~~~rsF~RTFvL~P~-~~~~~I~nD~l~ir~~s~ 205 (221)
T 1of5_A 166 NSTSNNKLSKKSFDRTWVIVPM-NNSVIIASDLLTVRAYST 205 (221)
T ss_dssp ---CCSCCEEEEEEEEEEEEEE-TTEEEEEEEEEEEEECCC
T ss_pred cccccccCCccceEEEEEEEec-CCeEEEEeeEEEeecCCC
Confidence 47999999999999 569999999999876544
No 11
>1q40_B MEX67, mRNA export factor MEX67; NTF2-fold, nuclear export, translation; 1.95A {Candida albicans} SCOP: d.17.4.2
Probab=99.83 E-value=1.3e-20 Score=173.38 Aligned_cols=126 Identities=17% Similarity=0.265 Sum_probs=102.1
Q ss_pred CCHHHHHHHHHHHHHHHHccCcccccccccCCCeeeccCCCCc------------------------------------c
Q 015694 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGS------------------------------------M 53 (402)
Q Consensus 10 ~~~~~vg~~FV~~YY~~l~~~p~~L~~fY~~~S~l~~~~~~~~------------------------------------~ 53 (402)
.....++..||++||+++|++|..|..||+++|+|+|...... +
T Consensus 11 ~~~~~~~~~Fl~~Yy~~fDsdR~~L~~lY~~~S~fS~s~~~~~p~~~~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~ 90 (219)
T 1q40_B 11 EDSRNLATNFIANYLKLWDANRSELMILYQNESQFSMQVDSSHPHLIESGNSGYSGSTDFGYYLNNSRNLTRVSSIKARM 90 (219)
T ss_dssp --CHHHHHHHHHHHHHHHHSCGGGGGGGCCTTCEEEEEECTTCCCCCCCB------SCCCTTTTTTCCCTTTCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHhhccccEEEEEecCCCCccccccccccccccchhhhhhhccchhcccchhhhh
Confidence 4567899999999999999999999999999999988742110 0
Q ss_pred -ceeccHHHHHHHHhcCCCCcceEEE------eeeEeeeeC-CCcEEEEEEEEEEeCC----------------------
Q 015694 54 -TTVTTMKAINDRILSLNYEDYTAEI------KTADAQDSY-EKGVIVLVTGCLTGKD---------------------- 103 (402)
Q Consensus 54 -~~~~g~~~I~~~i~sl~~~~~~~~I------~~~d~q~s~-~~~vlv~V~G~l~~~~---------------------- 103 (402)
....|.++|.++|.+|| .++|.| .++|||+.. .+||||+|+|.++..+
T Consensus 91 ~~l~~G~~~I~~~l~~LP--kT~H~l~~~~~s~~vD~~~~p~~~~ilitV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~ 168 (219)
T 1q40_B 91 AKLSIGQEQIYKSFQQLP--KTRHDIIATPELFSMEVYKFPTLNGIMITLHGSFDEVAQPEVDGSASSAPSGPRGGSRYH 168 (219)
T ss_dssp HTCEEHHHHHHHHHHTSC--EEECCTTTCGGGCEEEEEECSSTTCEEEEEEEEEEEEECCSSCCCC----------CCSS
T ss_pred hhhccCHHHHHHHHHHCC--CeeEecccCCCceEEEeEecCCCCeEEEEEEEEEEECCCccccccccccccccccccccc
Confidence 04679999999999999 558899 599999653 4789999999997533
Q ss_pred ---------CcccceeEEEEeeEcCCCcEEEEeceEEeecccc
Q 015694 104 ---------NVKKKFTQTFFLAPQDKGGYFVLNDVFRFVEENE 137 (402)
Q Consensus 104 ---------~~~r~F~qtF~L~~~~~~~y~V~nDifr~~~~~~ 137 (402)
...|.|+|||+|.|.++|+|+|+||+||+.....
T Consensus 169 ~~~~~~~~~~~~rsF~RtFvL~P~~~~~~~I~nD~l~ir~~~~ 211 (219)
T 1q40_B 169 SGPKHKRIPLSKKSFDRTFVVIPGPNGSMIVASDTLLIRPYTS 211 (219)
T ss_dssp SSSCCCCCCCCCEEEEEEEEEECC---CCEEEEEEEEEEECCS
T ss_pred cccccccccCCccceEEEEEEEECCCCcEEEEeeEEEEecCCC
Confidence 2679999999999997679999999999876543
No 12
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.75 E-value=5.7e-18 Score=137.34 Aligned_cols=80 Identities=23% Similarity=0.310 Sum_probs=74.9
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
..++++|||+|||.++|+++|+++|++||.|.++.|..++.+ +++|||||+|.+.++|++||+.+ +..|+||+|+|.+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345889999999999999999999999999999999998776 88999999999999999999987 9999999999999
Q ss_pred ee
Q 015694 377 GV 378 (402)
Q Consensus 377 ~~ 378 (402)
+.
T Consensus 96 Ak 97 (99)
T 4fxv_A 96 AR 97 (99)
T ss_dssp CC
T ss_pred ee
Confidence 84
No 13
>3nv0_A Nuclear RNA export factor 2; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=99.70 E-value=1.3e-16 Score=145.63 Aligned_cols=123 Identities=16% Similarity=0.196 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHHHHHccC-----ccccccccc-CCCeee--ccCC-----------------------C---------
Q 015694 11 SAQVVGNAFVEQYYHILHQS-----PGLVHRFYQ-DSSLLS--RPDS-----------------------N--------- 50 (402)
Q Consensus 11 ~~~~vg~~FV~~YY~~l~~~-----p~~L~~fY~-~~S~l~--~~~~-----------------------~--------- 50 (402)
....++..|+++||.++|++ |..|..+|+ ++|+++ .+-. |
T Consensus 11 ~~~~~v~~Fl~~yf~~yD~~d~~~~R~~Ll~~Y~~~~a~FSltv~~~~~p~~~~~~~~~~~~~~Y~~~SRNl~k~~~~~~ 90 (205)
T 3nv0_A 11 EVRTLVEEFIITYYKIYDGADGQQTRKQLLDAYDTNNSTFTHTVVCLWDPIKFVMYPDSESYRMYLRTSHNVLNQEYFAA 90 (205)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTHHHHGGGGGGGBCSSSCEEEEEEECCCCSSSCCCCSCHHHHHHHHHTCCCGGGCCTTTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCchhhHHHHHHhhCccCcEEEEEecCCCCcccccccccccchhhhhhhccccccccccHH
Confidence 45678999999999999987 999999999 678664 1000 0
Q ss_pred Cccc-eeccHHHHHHHHhcCCCCcceEEEee--eEeeeeCCCcEEEEEEEEEEeC---------CCcccceeEEEEeeEc
Q 015694 51 GSMT-TVTTMKAINDRILSLNYEDYTAEIKT--ADAQDSYEKGVIVLVTGCLTGK---------DNVKKKFTQTFFLAPQ 118 (402)
Q Consensus 51 ~~~~-~~~g~~~I~~~i~sl~~~~~~~~I~~--~d~q~s~~~~vlv~V~G~l~~~---------~~~~r~F~qtF~L~~~ 118 (402)
..+. -..|.++|.++|.+|| .++|.+.+ +|||+..+++++|+|+|.++.. ....|.|+|||+|.|.
T Consensus 91 ~r~~~L~~G~~~I~~~L~~LP--~T~H~~~s~~vD~~p~~~~~l~i~V~G~f~e~~~~~~~~~~~~~~r~FsRtFiL~P~ 168 (205)
T 3nv0_A 91 NRASRISHGAMDIVVALSRLP--ATIHLMDTFVVDVFLVSATLLGFTLHGTFRDGPSAIKPENTEEHDNYFTRTFMVAPR 168 (205)
T ss_dssp SSCCSCEEHHHHHHHHHHHSC--CEEECGGGCEEEEEEECSSCEEEEEEEEEEETHHHHSCCSCSTTCEEEEEEEEEEEC
T ss_pred HHHHHHhhCHHHHHHHHHhCC--CeEEecCceEEEEEEeCCCeEEEEEEEEEEEcccccccccCCCCCceeEEEEEEEEC
Confidence 0011 3479999999999999 45788875 8999999889999999999965 3567999999999998
Q ss_pred CCCcEEEEeceEEeecc
Q 015694 119 DKGGYFVLNDVFRFVEE 135 (402)
Q Consensus 119 ~~~~y~V~nDifr~~~~ 135 (402)
++|+|+|+||++..-..
T Consensus 169 ~~g~~~I~ND~L~Ir~~ 185 (205)
T 3nv0_A 169 GEGKVAIVSDQLFISSM 185 (205)
T ss_dssp STTCEEEEEEEEEEECC
T ss_pred CCCcEEEEecEEEeeCC
Confidence 77799999999976543
No 14
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.70 E-value=5.2e-17 Score=134.30 Aligned_cols=84 Identities=13% Similarity=0.141 Sum_probs=77.7
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
++.++|||+||++++++++|+++|++||.|.++.|+.+..+ +++|||||+|.+.++|++||+.+ +..|+||+|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 44689999999999999999999999999999999999886 89999999999999999999988 99999999999998
Q ss_pred eeeccc
Q 015694 378 VYIISR 383 (402)
Q Consensus 378 ~~~~~~ 383 (402)
.....|
T Consensus 84 ~~~~~~ 89 (110)
T 3s8s_A 84 IKGQQR 89 (110)
T ss_dssp STTHHH
T ss_pred CCCcHH
Confidence 765544
No 15
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.69 E-value=1.6e-16 Score=124.91 Aligned_cols=79 Identities=22% Similarity=0.397 Sum_probs=73.3
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEe
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLG 377 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~ 377 (402)
..+.++|||+|||.++++++|+++|++||.|..+.++.++.+ +++|||||+|.+.++|.+||+.++..|+|++|+|.++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 455789999999999999999999999999999999998765 8899999999999999999988888999999999875
No 16
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-17 Score=132.14 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=73.5
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCC-CeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC--CCccCCEEEEEEEe
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFG-PIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL--SLISLSLIIKIVLG 377 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG-~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~--~~~i~Gr~i~V~~~ 377 (402)
++.|||+|||.++|+++|+++|++|| .|.+++|++++.+ +++|||||+|.+.++|++||+.+ +..|+||+|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 7999999888776 88999999999999999999987 56899999999998
Q ss_pred eeecc
Q 015694 378 VYIIS 382 (402)
Q Consensus 378 ~~~~~ 382 (402)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 76654
No 17
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.6e-16 Score=127.09 Aligned_cols=84 Identities=21% Similarity=0.298 Sum_probs=77.3
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
..+.++|||+|||.++++++|+++|++||.|..+.+..++.++++|||||+|.+.++|.+||+.+ +..|+|++|+|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34578999999999999999999999999999999999886688999999999999999999887 99999999999998
Q ss_pred eeecc
Q 015694 378 VYIIS 382 (402)
Q Consensus 378 ~~~~~ 382 (402)
.....
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 77654
No 18
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.68 E-value=9.6e-17 Score=133.46 Aligned_cols=81 Identities=23% Similarity=0.314 Sum_probs=73.9
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeeee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVYI 380 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~~ 380 (402)
.++|||||||+++++++|+++|++||.|.+++|+.+.++ ++|||||+|.+.++|++||+.+ +..|+||+|+|.++..+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~-~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE-EEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCC-CCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 468999999999999999999999999999999988654 7899999999999999999987 99999999999998765
Q ss_pred ccc
Q 015694 381 ISR 383 (402)
Q Consensus 381 ~~~ 383 (402)
..+
T Consensus 84 ~~~ 86 (115)
T 4f25_A 84 KER 86 (115)
T ss_dssp CC-
T ss_pred ccc
Confidence 543
No 19
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.67 E-value=4.5e-16 Score=128.86 Aligned_cols=86 Identities=17% Similarity=0.242 Sum_probs=78.7
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEE
Q 015694 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIV 375 (402)
Q Consensus 298 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~ 375 (402)
...+.++|||+|||.++++++|+++|++||.|..+.|..+..+ +++|||||+|.+.++|++||+.+ +..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456799999999999999999999999999999999988655 78999999999999999999988 999999999999
Q ss_pred Eeeeeccc
Q 015694 376 LGVYIISR 383 (402)
Q Consensus 376 ~~~~~~~~ 383 (402)
++.....+
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 99877654
No 20
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4e-16 Score=126.64 Aligned_cols=85 Identities=22% Similarity=0.305 Sum_probs=78.0
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
..+.++|||+|||.++++++|+++|++||.|..+.|..++.+ +++|||||+|.+.++|++||+.+ +..|+|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 455799999999999999999999999999999999988755 88999999999999999999988 9999999999999
Q ss_pred eeeeccc
Q 015694 377 GVYIISR 383 (402)
Q Consensus 377 ~~~~~~~ 383 (402)
+.....+
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 8776554
No 21
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.66 E-value=3.5e-16 Score=122.73 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=72.9
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
+.++|||+|||.++++++|+++|++||.|..+.+..++.+ +++|||||+|.+.++|.+|++.+ +..|+|++|+|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 4689999999999999999999999999999999988655 78999999999999999999987 999999999999986
Q ss_pred ee
Q 015694 379 YI 380 (402)
Q Consensus 379 ~~ 380 (402)
.+
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 54
No 22
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.9e-16 Score=123.30 Aligned_cols=79 Identities=20% Similarity=0.356 Sum_probs=73.4
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
....++|||+|||.++++++|+++|++||.|..+.+..++.+ +++|||||+|.+.++|.+|++.+ +..|+|++|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 345789999999999999999999999999999999888765 78999999999999999999988 9999999999998
Q ss_pred e
Q 015694 377 G 377 (402)
Q Consensus 377 ~ 377 (402)
+
T Consensus 93 a 93 (94)
T 2e5h_A 93 A 93 (94)
T ss_dssp C
T ss_pred c
Confidence 6
No 23
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8e-16 Score=124.82 Aligned_cols=85 Identities=21% Similarity=0.293 Sum_probs=77.2
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 298 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
...+.++|||+|||.++++++|+++|++||.|..+.|..+..+ ++|||||+|.+.++|++||+.+ +..|+|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999999887665 8999999999999999999987 9999999999999
Q ss_pred eeeeccc
Q 015694 377 GVYIISR 383 (402)
Q Consensus 377 ~~~~~~~ 383 (402)
+.....+
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9876554
No 24
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.66 E-value=4.3e-16 Score=121.09 Aligned_cols=79 Identities=19% Similarity=0.283 Sum_probs=73.4
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVY 379 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~ 379 (402)
+++|||+|||.++++++|+++|++||.|..+.+..+..+ +++|||||+|.+.++|++|++.+ +..|+|++|+|.++..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 368999999999999999999999999999999988665 78999999999999999999987 9999999999999875
Q ss_pred e
Q 015694 380 I 380 (402)
Q Consensus 380 ~ 380 (402)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 25
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.66 E-value=2.5e-16 Score=129.68 Aligned_cols=84 Identities=25% Similarity=0.333 Sum_probs=76.1
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEee
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGV 378 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~ 378 (402)
.++++|||+|||.++++++|+++|++||.|..+.|..++.+ +++|||||+|.+.++|.+||+.++..|+|+.|+|.++.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 102 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEcc
Confidence 45789999999999999999999999999999999888765 88999999999999999999999999999999999998
Q ss_pred eeccc
Q 015694 379 YIISR 383 (402)
Q Consensus 379 ~~~~~ 383 (402)
.+..+
T Consensus 103 ~~~~~ 107 (109)
T 2rs2_A 103 PRRAQ 107 (109)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 77654
No 26
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.66 E-value=9.8e-16 Score=127.41 Aligned_cols=79 Identities=29% Similarity=0.554 Sum_probs=73.6
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
..+.++|||+|||.++++++|+++|++||.|..+.|..++.+ +++|||||+|.+.++|++||+.+ +..|+|++|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 456799999999999999999999999999999999888665 78999999999999999999998 9999999999988
Q ss_pred e
Q 015694 377 G 377 (402)
Q Consensus 377 ~ 377 (402)
+
T Consensus 117 a 117 (118)
T 2khc_A 117 K 117 (118)
T ss_dssp C
T ss_pred c
Confidence 6
No 27
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.6e-16 Score=123.56 Aligned_cols=80 Identities=24% Similarity=0.323 Sum_probs=74.0
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
....++|||+|||.++++++|+++|++||.|..+.+..+..+ +++|||||+|.+.++|++|++.+ +..|+|++|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 345789999999999999999999999999999999998776 78999999999999999999987 9999999999988
Q ss_pred ee
Q 015694 377 GV 378 (402)
Q Consensus 377 ~~ 378 (402)
+.
T Consensus 92 a~ 93 (95)
T 2cqc_A 92 PS 93 (95)
T ss_dssp CS
T ss_pred cC
Confidence 63
No 28
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=8.1e-16 Score=124.80 Aligned_cols=85 Identities=20% Similarity=0.252 Sum_probs=76.9
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 298 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
.....++|||+|||.++++++|+++|++||.|..+.|..++.+ ++|||||+|.+.++|++||+.+ +..|+|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3455799999999999999999999999999999999888655 6899999999999999999977 9999999999999
Q ss_pred eeeeccc
Q 015694 377 GVYIISR 383 (402)
Q Consensus 377 ~~~~~~~ 383 (402)
+.....+
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9876554
No 29
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.3e-16 Score=124.53 Aligned_cols=84 Identities=24% Similarity=0.305 Sum_probs=76.7
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEee
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGV 378 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~ 378 (402)
...++|||+|||.++++++|+++|++||.|..+.|+.++.+ +++|||||+|.+.++|++||+..+..|+|+.|+|.++.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 44689999999999999999999999999999999888765 78999999999999999999944999999999999998
Q ss_pred eeccc
Q 015694 379 YIISR 383 (402)
Q Consensus 379 ~~~~~ 383 (402)
.+..+
T Consensus 88 ~~~~~ 92 (99)
T 2dgs_A 88 PRDSK 92 (99)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 77654
No 30
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.65 E-value=5.4e-16 Score=128.47 Aligned_cols=84 Identities=23% Similarity=0.388 Sum_probs=77.1
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
.+.++|||+|||.++++++|+++|++||.|..+.|..++.+ +++|||||+|.+.++|++||+.+ +..|+|++|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45689999999999999999999999999999999998755 88999999999999999999887 99999999999998
Q ss_pred eeeccc
Q 015694 378 VYIISR 383 (402)
Q Consensus 378 ~~~~~~ 383 (402)
.....+
T Consensus 103 ~~~~~~ 108 (115)
T 2cpz_A 103 RSKNDS 108 (115)
T ss_dssp CCSCCC
T ss_pred CCCCcC
Confidence 776543
No 31
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.8e-16 Score=126.23 Aligned_cols=83 Identities=19% Similarity=0.228 Sum_probs=76.8
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
.++++|||+|||.++++++|+++|++||.|..+.+..++.+ +++|||||+|.+.++|++||..+ +..|+|+.|+|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45789999999999999999999999999999999998775 78999999999999999999987 99999999999998
Q ss_pred eeecc
Q 015694 378 VYIIS 382 (402)
Q Consensus 378 ~~~~~ 382 (402)
.....
T Consensus 101 ~~~~~ 105 (106)
T 1p27_B 101 FVRGP 105 (106)
T ss_dssp EESSC
T ss_pred cCCCC
Confidence 77654
No 32
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.9e-16 Score=125.39 Aligned_cols=82 Identities=21% Similarity=0.221 Sum_probs=74.9
Q ss_pred CCCcEEEEccCCCCCCHHHHH----HHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEE
Q 015694 300 AEGCSIYVRNLAFTTTSTELE----EAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKI 374 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~----~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V 374 (402)
.++++|||+|||+++++++|+ ++|++||.|.++.|..++.+ +|||||+|.+.++|++||+.+ +..|+||+|+|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 457899999999999999999 99999999999999877766 899999999999999999988 99999999999
Q ss_pred EEeeeeccc
Q 015694 375 VLGVYIISR 383 (402)
Q Consensus 375 ~~~~~~~~~ 383 (402)
.++.....+
T Consensus 85 ~~a~~~~~~ 93 (96)
T 2dgx_A 85 SLATGASGP 93 (96)
T ss_dssp EECCCSSCC
T ss_pred EEcCCCCCC
Confidence 999766554
No 33
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5.4e-16 Score=125.88 Aligned_cols=85 Identities=25% Similarity=0.370 Sum_probs=77.5
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 298 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
...+.++|||+|||.++++++|+++|++||.|..+.|..+ .++.+|||||+|.+.++|.+||+.+ +..|+|++|+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456899999999999999999999999999999999888 5578999999999999999999987 9999999999999
Q ss_pred eeeeccc
Q 015694 377 GVYIISR 383 (402)
Q Consensus 377 ~~~~~~~ 383 (402)
+.....+
T Consensus 90 a~~~~~~ 96 (103)
T 2d9p_A 90 AQRKEER 96 (103)
T ss_dssp CSSCCCC
T ss_pred ecccccC
Confidence 9776554
No 34
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.65 E-value=4.8e-16 Score=121.40 Aligned_cols=78 Identities=23% Similarity=0.322 Sum_probs=72.3
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
.+.++|||+|||.++++++|+++|++||.|..+.+..+..+ +++|||||+|.+.++|.+|++.+ +..|+|++|+|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35789999999999999999999999999999999888555 78999999999999999999887 99999999999986
No 35
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.3e-16 Score=126.25 Aligned_cols=84 Identities=18% Similarity=0.234 Sum_probs=76.9
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
...++|||+|||.++++++|+++|++||.|..+.|..+..+ +++|||||+|.+.++|++||+.+ +..|+|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 45789999999999999999999999999999999888755 88999999999999999999998 99999999999998
Q ss_pred eeeccc
Q 015694 378 VYIISR 383 (402)
Q Consensus 378 ~~~~~~ 383 (402)
.....+
T Consensus 93 ~~~~~~ 98 (105)
T 1x5u_A 93 SAHNKN 98 (105)
T ss_dssp TTTSCC
T ss_pred CCCCcC
Confidence 776554
No 36
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.64 E-value=9.7e-16 Score=124.69 Aligned_cols=85 Identities=15% Similarity=0.190 Sum_probs=77.4
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCC---EEEEE
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLS---LIIKI 374 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~G---r~i~V 374 (402)
....++|||+|||.++++++|+++|++||.|..+.|..+..++++|||||+|.+.++|.+||+.+ +..|.| +.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 34579999999999999999999999999999999999886688999999999999999999987 888888 99999
Q ss_pred EEeeeeccc
Q 015694 375 VLGVYIISR 383 (402)
Q Consensus 375 ~~~~~~~~~ 383 (402)
.++.....+
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999876654
No 37
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.5e-16 Score=126.67 Aligned_cols=85 Identities=21% Similarity=0.281 Sum_probs=77.4
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
..+.++|||+|||.++++++|+++|++||.|..+.|..++.+ +++|||||+|.+.++|++||+.+ +..|+|++|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 345789999999999999999999999999999999888665 78999999999999999999887 9999999999999
Q ss_pred eeeeccc
Q 015694 377 GVYIISR 383 (402)
Q Consensus 377 ~~~~~~~ 383 (402)
+.....+
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876654
No 38
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=6.8e-16 Score=124.26 Aligned_cols=84 Identities=20% Similarity=0.376 Sum_probs=77.2
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
.+.++|||+|||.++++++|+++|++||.|..+.|..++.+ +++|||||+|.+.++|++||+.+ +..|+|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999888744 88999999999999999999888 99999999999999
Q ss_pred eeeccc
Q 015694 378 VYIISR 383 (402)
Q Consensus 378 ~~~~~~ 383 (402)
.....+
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 887654
No 39
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3e-16 Score=128.18 Aligned_cols=82 Identities=15% Similarity=0.116 Sum_probs=74.7
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEee
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGV 378 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~ 378 (402)
..+.++|||+|||+++|+++|+++|++||.|.++.|..+..++++|||||+|.+.++|.+||...++.|+|+.|+|.++.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 34568999999999999999999999999999999998877788999999999999999999944999999999999865
Q ss_pred ee
Q 015694 379 YI 380 (402)
Q Consensus 379 ~~ 380 (402)
..
T Consensus 88 ~~ 89 (103)
T 1s79_A 88 DY 89 (103)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 40
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.64 E-value=1.3e-16 Score=126.67 Aligned_cols=81 Identities=19% Similarity=0.199 Sum_probs=68.9
Q ss_pred cEEEEccCCCCCCHHHHHHHhhcCC--CeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 303 CSIYVRNLAFTTTSTELEEAFKIFG--PIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 303 ~~lfVgnLp~~vte~~L~~~F~~fG--~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
.+|||+|||+++++++|+++|++|| .|.++.++.++.+ +++|||||+|.+.++|++||+.+ +..|+||+|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 9999999998765 88999999999999999999988 999999999999988
Q ss_pred eeccc
Q 015694 379 YIISR 383 (402)
Q Consensus 379 ~~~~~ 383 (402)
....+
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 76553
No 41
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.64 E-value=8.5e-16 Score=123.87 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=72.1
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeE--------EEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCE
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKK--------NGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSL 370 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~--------~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr 370 (402)
..++|||+|||.++++++|+++|++||.|.. +.+..++.+ +++|||||+|.+.++|++|++.+ +..|+|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~ 91 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 91 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 4689999999999999999999999999999 999998665 88999999999999999999987 9999999
Q ss_pred EEEEEEe
Q 015694 371 IIKIVLG 377 (402)
Q Consensus 371 ~i~V~~~ 377 (402)
+|+|.++
T Consensus 92 ~l~V~~A 98 (99)
T 2la6_A 92 PIKVSFA 98 (99)
T ss_dssp BCEEEEC
T ss_pred EEEEEec
Confidence 9999886
No 42
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.64 E-value=5.8e-16 Score=123.61 Aligned_cols=79 Identities=25% Similarity=0.332 Sum_probs=73.7
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
...++|||+|||.++++++|+++|++||.|..+.|..+..++++|||||+|.+.++|++|++.+ +..|+|++|+|.++.
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 4568999999999999999999999999999999999887788999999999999999999977 999999999998763
No 43
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.5e-15 Score=125.37 Aligned_cols=84 Identities=15% Similarity=0.300 Sum_probs=76.8
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
....++|||+|||.++++++|+++|++||.|..+.|..+++++++|||||+|.+.++|++||+.+ +..|+|+.|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 45578999999999999999999999999999999999887788999999999999999999987 99999999999998
Q ss_pred eeecc
Q 015694 378 VYIIS 382 (402)
Q Consensus 378 ~~~~~ 382 (402)
.....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 65433
No 44
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.64 E-value=5.4e-16 Score=121.76 Aligned_cols=82 Identities=18% Similarity=0.213 Sum_probs=74.6
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC--CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK--QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~--~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
..++|||+|||.++++++|+++|++||.|..+.+..+..+ +++|||||+|.+.++|++|++.+ +..|+|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4689999999999999999999999999999999888765 37999999999999999999987 99999999999998
Q ss_pred eeecc
Q 015694 378 VYIIS 382 (402)
Q Consensus 378 ~~~~~ 382 (402)
.....
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 66543
No 45
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.64 E-value=8e-16 Score=135.04 Aligned_cols=82 Identities=16% Similarity=0.194 Sum_probs=74.3
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCC--CeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEE
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFG--PIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIV 375 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG--~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~ 375 (402)
.+.++|||+|||+++++++|+++|++|| .|..+.|+.|+.+ +++|||||+|.+.++|++||+.+ +..|+||+|+|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3468999999999999999999999999 9999999999766 88999999999999999999998 999999999999
Q ss_pred Eeeeec
Q 015694 376 LGVYII 381 (402)
Q Consensus 376 ~~~~~~ 381 (402)
++....
T Consensus 133 ~a~~~~ 138 (156)
T 3n9u_C 133 PATRQN 138 (156)
T ss_dssp ECCHHH
T ss_pred EcCCCc
Confidence 986543
No 46
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.8e-16 Score=124.93 Aligned_cols=85 Identities=21% Similarity=0.312 Sum_probs=77.2
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
..+.++|||+|||.++++++|+++|++||.|..+.|..++.+ +++|||||+|.+.++|.+||+.+ +..|+|++|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345789999999999999999999999999999999887665 78999999999999999999887 9999999999999
Q ss_pred eeeeccc
Q 015694 377 GVYIISR 383 (402)
Q Consensus 377 ~~~~~~~ 383 (402)
+.....+
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9876554
No 47
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.64 E-value=8.2e-16 Score=126.29 Aligned_cols=85 Identities=19% Similarity=0.257 Sum_probs=77.5
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
..++++|||+|||.++++++|+++|++||.|..+.+..++.+ +++|||||+|.+.++|.+||..+ +..|+|++|+|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 345789999999999999999999999999999999888655 78999999999999999999987 9999999999999
Q ss_pred eeeeccc
Q 015694 377 GVYIISR 383 (402)
Q Consensus 377 ~~~~~~~ 383 (402)
+.....|
T Consensus 103 a~~~~~~ 109 (110)
T 1oo0_B 103 CFVKGPK 109 (110)
T ss_dssp SEESSCC
T ss_pred cccCCCC
Confidence 9877654
No 48
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=6.1e-16 Score=124.30 Aligned_cols=82 Identities=24% Similarity=0.160 Sum_probs=73.9
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
...++|||+|||+++++++|+++|++||.|..+.++.++.+ +++|||||+|.+.++|++||+.+ +..|+||+|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34689999999999999999999999999988777777655 78999999999999999999988 89999999999998
Q ss_pred eeec
Q 015694 378 VYII 381 (402)
Q Consensus 378 ~~~~ 381 (402)
....
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 7554
No 49
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=1.7e-15 Score=122.96 Aligned_cols=83 Identities=18% Similarity=0.250 Sum_probs=75.2
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
....++|||+|||+++++++|+++|++|| |..+.|+.++.+ +++|||||+|.+.++|++|| .+ +..|+|++|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34578999999999999999999999997 999999999875 88999999999999999999 66 9999999999999
Q ss_pred eeeeccc
Q 015694 377 GVYIISR 383 (402)
Q Consensus 377 ~~~~~~~ 383 (402)
+.....+
T Consensus 90 a~~~~~~ 96 (103)
T 2dng_A 90 AEGRKQD 96 (103)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 8776543
No 50
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.63 E-value=3.9e-16 Score=125.64 Aligned_cols=78 Identities=19% Similarity=0.215 Sum_probs=69.7
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCC--eeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CC----ccCCEEE
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGP--IKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SL----ISLSLII 372 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~--I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~----~i~Gr~i 372 (402)
.-.+|||+|||+++|+++|+++|++||. +.++++.+|+.+ +++|||||+|.+.++|++||+.+ +. .|+||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3578999999999999999999999995 567888888776 88999999999999999999987 54 6999999
Q ss_pred EEEEee
Q 015694 373 KIVLGV 378 (402)
Q Consensus 373 ~V~~~~ 378 (402)
+|.++-
T Consensus 88 ~V~~Ak 93 (95)
T 2lkz_A 88 GVDFAK 93 (95)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 999874
No 51
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.63 E-value=3e-15 Score=128.06 Aligned_cols=85 Identities=24% Similarity=0.336 Sum_probs=78.4
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
....++|||+|||.++++++|+++|++||.|..+.|..++.+ +++|||||+|.+.++|.+||+.+ +..|+|++|+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345789999999999999999999999999999999998776 78999999999999999999988 9999999999999
Q ss_pred eeeeccc
Q 015694 377 GVYIISR 383 (402)
Q Consensus 377 ~~~~~~~ 383 (402)
+.....+
T Consensus 119 a~~~~~~ 125 (139)
T 1u6f_A 119 AASGHQR 125 (139)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9877655
No 52
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.4e-16 Score=123.60 Aligned_cols=83 Identities=17% Similarity=0.263 Sum_probs=76.2
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEE-EEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKN-GVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~-~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
.+++|||+|||.++++++|+++|++||.|..+ .|..++.+ +++|||||+|.+.++|++||+.+ +..|+|++|+|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46899999999999999999999999999998 88887554 78999999999999999999988 99999999999999
Q ss_pred eeeccc
Q 015694 378 VYIISR 383 (402)
Q Consensus 378 ~~~~~~ 383 (402)
.....+
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 877654
No 53
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.1e-16 Score=122.76 Aligned_cols=83 Identities=22% Similarity=0.318 Sum_probs=76.4
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
..++|||+|||.++++++|+++|++||.|..+.+..+..+ +++|||||+|.+.++|.+||+.+ +..|+|++|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 4689999999999999999999999999999999988765 78999999999999999999977 999999999999987
Q ss_pred eeccc
Q 015694 379 YIISR 383 (402)
Q Consensus 379 ~~~~~ 383 (402)
.+..+
T Consensus 84 ~~~~~ 88 (95)
T 2dnz_A 84 ERLDG 88 (95)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 76543
No 54
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.63 E-value=8e-16 Score=123.30 Aligned_cols=81 Identities=15% Similarity=0.193 Sum_probs=74.7
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVY 379 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~ 379 (402)
+++|||+|||.++++++|+++|++||.|..+.+..++.+ +++|||||+|.+.++|.+|++.+ +..|+|+.|+|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 579999999999999999999999999999999888665 78999999999999999999887 9999999999999876
Q ss_pred ecc
Q 015694 380 IIS 382 (402)
Q Consensus 380 ~~~ 382 (402)
...
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 543
No 55
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=9e-16 Score=123.28 Aligned_cols=83 Identities=24% Similarity=0.414 Sum_probs=75.9
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCC---C-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEE
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSN---K-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKI 374 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~---~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V 374 (402)
.+.++|||+|||.++++++|+++|++||.|..+.|..+.. + +++|||||+|.+.++|++||+.+ +..|+|++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3468999999999999999999999999999999998876 3 67999999999999999999998 99999999999
Q ss_pred EEeeeecc
Q 015694 375 VLGVYIIS 382 (402)
Q Consensus 375 ~~~~~~~~ 382 (402)
.++.....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99876554
No 56
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.3e-15 Score=122.07 Aligned_cols=83 Identities=20% Similarity=0.205 Sum_probs=75.1
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEe
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLG 377 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~ 377 (402)
..+.++|||+|||+++++++|+++|++||.|..+.|..++.+ +++|||||+|.+.++|++||.. ++.|+|++|+|.++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEECC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEEec
Confidence 445789999999999999999999999999999999998765 8899999999999999999995 78999999999998
Q ss_pred eeecc
Q 015694 378 VYIIS 382 (402)
Q Consensus 378 ~~~~~ 382 (402)
..+..
T Consensus 91 ~~~~~ 95 (103)
T 2cqg_A 91 NSKQS 95 (103)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 76543
No 57
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.6e-15 Score=123.41 Aligned_cols=81 Identities=15% Similarity=0.029 Sum_probs=71.2
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC---CCccCCEEEEE
Q 015694 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL---SLISLSLIIKI 374 (402)
Q Consensus 298 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~---~~~i~Gr~i~V 374 (402)
...++++|||+|||+++++++|+++|++||.|..+.|+.+ +|||||+|.+.++|.+|++.+ +..|+||+|+|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 3456789999999999999999999999999999877543 799999999999999999965 68899999999
Q ss_pred EEeeeeccc
Q 015694 375 VLGVYIISR 383 (402)
Q Consensus 375 ~~~~~~~~~ 383 (402)
.++..+..+
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 998766544
No 58
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.8e-15 Score=125.52 Aligned_cols=83 Identities=20% Similarity=0.263 Sum_probs=75.3
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEE
Q 015694 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVL 376 (402)
Q Consensus 298 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~ 376 (402)
.....++|||+|||.++++++|+++|++||.|..+.|..++.+ +++|||||+|.+.++|++||+.+...|+|++|+|.+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 92 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNL 92 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEE
Confidence 4456799999999999999999999999999999999888765 789999999999999999999994499999999999
Q ss_pred eeee
Q 015694 377 GVYI 380 (402)
Q Consensus 377 ~~~~ 380 (402)
+...
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 8543
No 59
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=8.4e-16 Score=125.15 Aligned_cols=84 Identities=21% Similarity=0.214 Sum_probs=77.2
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEe
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLG 377 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~ 377 (402)
..+.++|||+|||+++++++|+++|++||.|..+.|..++.+ +++|||||+|.+.++|++||...+..|+|+.|+|.++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 456799999999999999999999999999999999998665 8899999999999999999999899999999999988
Q ss_pred eeecc
Q 015694 378 VYIIS 382 (402)
Q Consensus 378 ~~~~~ 382 (402)
..+..
T Consensus 93 ~~~~~ 97 (105)
T 2dh8_A 93 TPRGM 97 (105)
T ss_dssp CCSSC
T ss_pred cCCCC
Confidence 76654
No 60
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=124.18 Aligned_cols=85 Identities=24% Similarity=0.346 Sum_probs=76.4
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEc-CCC-CcccEEEEEeCCHHHHHHHHHhC--CCccCCEEEEE
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVR-SNK-QGYCFGFVAFETPGSVQSALEVL--SLISLSLIIKI 374 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~-~~~-~~~gfgFVeF~~~~~a~~Al~~~--~~~i~Gr~i~V 374 (402)
....++|||+|||.++++++|+++|++||.|..+.|..+ +.+ +++|||||+|.+.++|++||+.+ +..|+|++|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 455789999999999999999999999999999998887 334 78999999999999999999986 89999999999
Q ss_pred EEeeeeccc
Q 015694 375 VLGVYIISR 383 (402)
Q Consensus 375 ~~~~~~~~~ 383 (402)
.++.....+
T Consensus 92 ~~a~~~~~~ 100 (107)
T 2cph_A 92 EWADSEVTV 100 (107)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999776543
No 61
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=125.08 Aligned_cols=84 Identities=25% Similarity=0.351 Sum_probs=76.8
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-------CCccCCEE
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-------SLISLSLI 371 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-------~~~i~Gr~ 371 (402)
.+.++|||+|||+++++++|+++|++||.|..+.|..++.+ +++|||||+|.+.++|.+||+.+ ++.|+|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 45789999999999999999999999999999999888776 78999999999999999999976 78999999
Q ss_pred EEEEEeeeeccc
Q 015694 372 IKIVLGVYIISR 383 (402)
Q Consensus 372 i~V~~~~~~~~~ 383 (402)
|+|.++..+..+
T Consensus 93 l~v~~a~~~~~~ 104 (111)
T 1x4h_A 93 LKVDLAVTRDEA 104 (111)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCccC
Confidence 999999876554
No 62
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.62 E-value=5.8e-16 Score=131.58 Aligned_cols=84 Identities=23% Similarity=0.326 Sum_probs=76.5
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
..+.++|||+|||.++++++|+++|++||.|..+.|..++.+ +.+|||||+|.+.++|++||+.+ +..|+|++|+|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345789999999999999999999999999999999988766 78999999999999999999987 9999999999998
Q ss_pred eeeecc
Q 015694 377 GVYIIS 382 (402)
Q Consensus 377 ~~~~~~ 382 (402)
+.....
T Consensus 123 a~~~~p 128 (129)
T 2kxn_B 123 SITKRP 128 (129)
T ss_dssp CSSSSC
T ss_pred ecCCCC
Confidence 876543
No 63
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.62 E-value=2.2e-15 Score=123.04 Aligned_cols=78 Identities=23% Similarity=0.310 Sum_probs=73.5
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
..+++|||+|||.++++++|+++|++||.|..+.|..+..++++|||||+|.+.++|++||+.+ +..|+|+.|+|.++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 4478999999999999999999999999999999999986688999999999999999999987 99999999999986
No 64
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1e-15 Score=124.26 Aligned_cols=83 Identities=17% Similarity=0.227 Sum_probs=76.0
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
.+.++|||+|||.++++++|+++|++||.|..+.|..+..+ +++|||||+|.+.++|++||+.+ +..|+|+.|+|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 44789999999999999999999999999999999888775 78999999999999999999987 99999999999998
Q ss_pred eeecc
Q 015694 378 VYIIS 382 (402)
Q Consensus 378 ~~~~~ 382 (402)
.....
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 76543
No 65
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=125.39 Aligned_cols=81 Identities=25% Similarity=0.331 Sum_probs=74.3
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
.+.++|||+|||.++++++|+++|++||.|..+.+..++.+ +++|||||+|.+.++|.+|++.+ +..|+|++|+|.++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 44689999999999999999999999999999999988665 78999999999999999999987 99999999999987
Q ss_pred eee
Q 015694 378 VYI 380 (402)
Q Consensus 378 ~~~ 380 (402)
..+
T Consensus 104 ~~k 106 (108)
T 2jrs_A 104 TER 106 (108)
T ss_dssp CSS
T ss_pred ccC
Confidence 543
No 66
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1e-15 Score=125.96 Aligned_cols=81 Identities=22% Similarity=0.308 Sum_probs=73.5
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
....++|||+|||.++++++|+++|++||.|..+.+..+.. .++|||||+|.+.++|++|++.+ +..|+|++|+|.++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 34578999999999999999999999999999999887754 48999999999999999999987 99999999999998
Q ss_pred eee
Q 015694 378 VYI 380 (402)
Q Consensus 378 ~~~ 380 (402)
..+
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 643
No 67
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=126.30 Aligned_cols=83 Identities=18% Similarity=0.227 Sum_probs=76.6
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
.+.++|||+|||.++++++|+++|++||.|..+.|..+..++++|||||+|.+.++|++||+.+ +..|+|+.|+|.++.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 3468999999999999999999999999999999998885588999999999999999999988 999999999999997
Q ss_pred eecc
Q 015694 379 YIIS 382 (402)
Q Consensus 379 ~~~~ 382 (402)
....
T Consensus 85 ~~~~ 88 (116)
T 2fy1_A 85 KPSF 88 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6554
No 68
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.8e-15 Score=123.33 Aligned_cols=81 Identities=17% Similarity=0.128 Sum_probs=73.3
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeE-EEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEee
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKK-NGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGV 378 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~-~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~ 378 (402)
...++|||+|||+++++++|+++|++||.|.. +.|..+..++++|||||+|.+.++|++||+..+..|+||.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 92 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECC
Confidence 45789999999999999999999999999987 77877755588999999999999999999988999999999998875
Q ss_pred ee
Q 015694 379 YI 380 (402)
Q Consensus 379 ~~ 380 (402)
..
T Consensus 93 ~~ 94 (104)
T 1wg5_A 93 RA 94 (104)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 69
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.61 E-value=3.7e-16 Score=126.59 Aligned_cols=80 Identities=10% Similarity=0.030 Sum_probs=74.5
Q ss_pred CCcEEEEccCCC------CCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCC-EE
Q 015694 301 EGCSIYVRNLAF------TTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLS-LI 371 (402)
Q Consensus 301 ~~~~lfVgnLp~------~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~G-r~ 371 (402)
.+++|||+|||. ++++++|+++|++||.|.++.|..++.+ +++|||||+|.+.++|++||+.+ +..|+| |.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 368999999999 9999999999999999999999999885 88999999999999999999987 999999 99
Q ss_pred EEEEEeeee
Q 015694 372 IKIVLGVYI 380 (402)
Q Consensus 372 i~V~~~~~~ 380 (402)
|+|.++..+
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999988654
No 70
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=4.8e-16 Score=119.07 Aligned_cols=76 Identities=26% Similarity=0.357 Sum_probs=71.2
Q ss_pred cEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEee
Q 015694 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGV 378 (402)
Q Consensus 303 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~ 378 (402)
++|||+|||.++++++|+++|++||.|..+.+..++.+ +++|||||+|.+.++|.+|++.+...|+|++|+|.+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~ 77 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 77 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEecC
Confidence 47999999999999999999999999999999888765 78999999999999999999999999999999999874
No 71
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=124.05 Aligned_cols=84 Identities=19% Similarity=0.211 Sum_probs=76.9
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhc-CCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCc-cCCEEEEEEE
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKI-FGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLI-SLSLIIKIVL 376 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~-fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~-i~Gr~i~V~~ 376 (402)
...++|||+|||.++++++|+++|++ ||.|..+.|..+..++++|||||+|.+.++|.+||+.+ +.. |+|++|+|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 34689999999999999999999999 99999999999985588999999999999999999988 888 9999999999
Q ss_pred eeeeccc
Q 015694 377 GVYIISR 383 (402)
Q Consensus 377 ~~~~~~~ 383 (402)
+.....+
T Consensus 87 a~~~~~~ 93 (104)
T 2dhg_A 87 AIPKASR 93 (104)
T ss_dssp CCCCCSC
T ss_pred ccCCCcC
Confidence 8766554
No 72
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=122.40 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=74.3
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCee-EEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEE----E
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIK-KNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLI----I 372 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~-~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~----i 372 (402)
...++|||+|||.++++++|+++|++||.|. .+.|..++.+ +++|||||+|.+.++|++|++.+ +..|+|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3478999999999999999999999999999 9999998765 78999999999999999999988 99999999 8
Q ss_pred EEEEeeee
Q 015694 373 KIVLGVYI 380 (402)
Q Consensus 373 ~V~~~~~~ 380 (402)
+|.++...
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 88887554
No 73
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=4.1e-15 Score=117.86 Aligned_cols=80 Identities=14% Similarity=0.077 Sum_probs=73.5
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
...++|||+|||+++++++|+++|++| .|..+.|+.+..++++|||||+|.+.++|++||+ + +..|+||.|+|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 446899999999999999999999999 8999999998666889999999999999999999 7 999999999999986
Q ss_pred eec
Q 015694 379 YII 381 (402)
Q Consensus 379 ~~~ 381 (402)
...
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 653
No 74
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.9e-15 Score=121.85 Aligned_cols=82 Identities=20% Similarity=0.253 Sum_probs=74.3
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCC--CCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSN--KQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~--~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
...++|||+|||+++++++|+++|++|| |..+.|..+.. ++++|||||+|.+.++|++|| .+ +..|+|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3468999999999999999999999999 99999988876 478999999999999999999 66 9999999999999
Q ss_pred eeeeccc
Q 015694 377 GVYIISR 383 (402)
Q Consensus 377 ~~~~~~~ 383 (402)
+.....+
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 8776543
No 75
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=125.81 Aligned_cols=84 Identities=12% Similarity=0.041 Sum_probs=76.6
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCe-eEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEe
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPI-KKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLG 377 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I-~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~ 377 (402)
..+.++|||+|||+++++++|+++|++||.| ..+.|+.+..++++|||||+|.+.++|++||+..+..|+||.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV 91 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEC
Confidence 3457899999999999999999999999999 888998888668999999999999999999998899999999999998
Q ss_pred eeecc
Q 015694 378 VYIIS 382 (402)
Q Consensus 378 ~~~~~ 382 (402)
.....
T Consensus 92 ~~~~~ 96 (114)
T 2cpy_A 92 TLEDM 96 (114)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 76653
No 76
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.9e-16 Score=126.31 Aligned_cols=79 Identities=14% Similarity=0.075 Sum_probs=70.3
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC---CCccCCEEEEEEE
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL---SLISLSLIIKIVL 376 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~---~~~i~Gr~i~V~~ 376 (402)
.+.++|||+|||+++++++|+++|++||.|.++.|+.+ +|||||+|.+.++|.+|++.+ +..|+||+|+|.+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 34789999999999999999999999999999988753 799999999999999999965 4789999999999
Q ss_pred eeeeccc
Q 015694 377 GVYIISR 383 (402)
Q Consensus 377 ~~~~~~~ 383 (402)
+..+..+
T Consensus 89 A~~~~~~ 95 (105)
T 1sjq_A 89 SNHKELK 95 (105)
T ss_dssp CSSSSCC
T ss_pred cCCCCCC
Confidence 8765543
No 77
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.5e-15 Score=122.92 Aligned_cols=82 Identities=16% Similarity=0.066 Sum_probs=71.2
Q ss_pred CCCCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC---CCccCCEEEE
Q 015694 297 NEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL---SLISLSLIIK 373 (402)
Q Consensus 297 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~---~~~i~Gr~i~ 373 (402)
....++++|||+|||+++++++|+++|++||.|..+.|+. .+|||||+|.+.++|.+|++.+ ++.|+||+|+
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-----FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3445678999999999999999999999999999987753 3799999999999999999976 4679999999
Q ss_pred EEEeeeeccc
Q 015694 374 IVLGVYIISR 383 (402)
Q Consensus 374 V~~~~~~~~~ 383 (402)
|.++..+..+
T Consensus 85 V~~a~~~~~~ 94 (104)
T 1wex_A 85 FNYSTSKRIT 94 (104)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCcccc
Confidence 9998765543
No 78
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.3e-15 Score=126.07 Aligned_cols=82 Identities=18% Similarity=0.215 Sum_probs=74.5
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
.+.++|||+|||.++++++|+++|++||.|..+.|+.++.+ +++|||||+|.+.++|++|| .+ +..|+|+.|+|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34689999999999999999999999999999999888775 78999999999999999999 55 99999999999998
Q ss_pred eeecc
Q 015694 378 VYIIS 382 (402)
Q Consensus 378 ~~~~~ 382 (402)
.....
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 65543
No 79
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.8e-15 Score=124.90 Aligned_cols=85 Identities=20% Similarity=0.235 Sum_probs=76.5
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCee--------EEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccC
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIK--------KNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISL 368 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~--------~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~ 368 (402)
..+.++|||+|||.++++++|+++|++||.|. .+.|..++.+ +++|||||+|.+.++|++||+.+ +..|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45679999999999999999999999999998 5888888555 88999999999999999999987 99999
Q ss_pred CEEEEEEEeeeeccc
Q 015694 369 SLIIKIVLGVYIISR 383 (402)
Q Consensus 369 Gr~i~V~~~~~~~~~ 383 (402)
|++|+|.++.....+
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999998776543
No 80
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.61 E-value=3.5e-15 Score=127.36 Aligned_cols=79 Identities=23% Similarity=0.318 Sum_probs=72.3
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
....++|||+|||.++++++|+++|++||.|..+.+..++.+ +++|||||+|.+.++|++||+.+ +..|+|++|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 345789999999999999999999999999999999888655 78999999999999999999988 9999999999987
Q ss_pred e
Q 015694 377 G 377 (402)
Q Consensus 377 ~ 377 (402)
+
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 81
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.60 E-value=3.7e-15 Score=120.85 Aligned_cols=76 Identities=18% Similarity=0.128 Sum_probs=67.7
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-C--CccCCEEEEEE
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-S--LISLSLIIKIV 375 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~--~~i~Gr~i~V~ 375 (402)
.++++.|||+|||.++|+++|+++|++||.|.++.++. .+|||||+|.+.++|.+|++.+ + +.|+||+|+|.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 45678999999999999999999999999999988752 4789999999999999999987 4 45899999999
Q ss_pred Eeee
Q 015694 376 LGVY 379 (402)
Q Consensus 376 ~~~~ 379 (402)
++-.
T Consensus 93 ~S~~ 96 (100)
T 3r27_A 93 YSTS 96 (100)
T ss_dssp ECSC
T ss_pred eccc
Confidence 9754
No 82
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.60 E-value=1.4e-15 Score=123.92 Aligned_cols=85 Identities=13% Similarity=0.139 Sum_probs=76.5
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCcc---CCEEEE
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLIS---LSLIIK 373 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i---~Gr~i~ 373 (402)
..+.++|||+|||.++++++|+++|++||.|..+.|+.++.+ +++|||||+|.+.++|.+||+.+ +..+ +|++|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 345789999999999999999999999999999999888765 78999999999999999999988 7777 899999
Q ss_pred EEEeeeeccc
Q 015694 374 IVLGVYIISR 383 (402)
Q Consensus 374 V~~~~~~~~~ 383 (402)
|.++.....+
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999776554
No 83
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.60 E-value=2.8e-15 Score=125.17 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=74.3
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCC---eeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEE
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGP---IKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVL 376 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~---I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~ 376 (402)
.+.++|||+|||+++|+++|+++|+.||. |..+.|..++.++++|||||+|.+.++|++||+..+..|+||.|+|.+
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~ 94 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFK 94 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence 45789999999999999999999999999 899999998888899999999999999999999449999999999998
Q ss_pred eeee
Q 015694 377 GVYI 380 (402)
Q Consensus 377 ~~~~ 380 (402)
+...
T Consensus 95 a~~~ 98 (118)
T 2db1_A 95 SHRT 98 (118)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 7543
No 84
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.60 E-value=3.2e-15 Score=117.64 Aligned_cols=78 Identities=24% Similarity=0.365 Sum_probs=71.8
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
+.++|||+|||.++++++|+++|++||.|..+.+..+..+ +++|||||+|.+.++|++|+ .+ +..|+|++|+|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3589999999999999999999999999999999988755 78999999999999999999 66 999999999999874
Q ss_pred e
Q 015694 379 Y 379 (402)
Q Consensus 379 ~ 379 (402)
.
T Consensus 84 ~ 84 (89)
T 3ucg_A 84 T 84 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 85
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.9e-15 Score=125.32 Aligned_cols=83 Identities=18% Similarity=0.254 Sum_probs=76.3
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEee
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGV 378 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~ 378 (402)
.+.++|||+|||.++++++|+++|++||.|..+.|+.++.+ +++|||||+|.+.++|++||+..+..|+|++|+|.++.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 34689999999999999999999999999999999988765 78999999999999999999988999999999999987
Q ss_pred eecc
Q 015694 379 YIIS 382 (402)
Q Consensus 379 ~~~~ 382 (402)
.+..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7654
No 86
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.5e-15 Score=125.40 Aligned_cols=85 Identities=16% Similarity=0.207 Sum_probs=76.5
Q ss_pred CCCCcEEEEccCCCCCCHHHHH---HHhhcCCCeeEEEEEEcCCC----CcccEEEEEeCCHHHHHHHHHhC-CCccCCE
Q 015694 299 EAEGCSIYVRNLAFTTTSTELE---EAFKIFGPIKKNGVQVRSNK----QGYCFGFVAFETPGSVQSALEVL-SLISLSL 370 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~---~~F~~fG~I~~~~v~~~~~~----~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr 370 (402)
....++|||+|||+++++++|+ ++|++||.|..+.|..+..+ +.+|||||+|.+.++|++||+.+ +..|+||
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3457899999999999999999 99999999999999887653 46799999999999999999997 9999999
Q ss_pred EEEEEEeeeeccc
Q 015694 371 IIKIVLGVYIISR 383 (402)
Q Consensus 371 ~i~V~~~~~~~~~ 383 (402)
+|+|.++..+.+.
T Consensus 92 ~l~V~~a~~k~~~ 104 (111)
T 2cpi_A 92 TLKASLGTTKYCS 104 (111)
T ss_dssp EEEEESCCCCSCS
T ss_pred EEEEEeccccccc
Confidence 9999999877653
No 87
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.60 E-value=5.4e-16 Score=131.78 Aligned_cols=83 Identities=17% Similarity=0.163 Sum_probs=75.1
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeE--EEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CC----ccCCEE
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKK--NGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SL----ISLSLI 371 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~--~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~----~i~Gr~ 371 (402)
...++|||+|||+++++++|+++|++||.|.. ++|++|+.+ +++|||||+|.+. +|.+||..+ +. .|+||+
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45789999999999999999999999999977 899998855 8999999999999 999999998 88 999999
Q ss_pred EEEEEeeeeccc
Q 015694 372 IKIVLGVYIISR 383 (402)
Q Consensus 372 i~V~~~~~~~~~ 383 (402)
|+|.++.....+
T Consensus 100 l~V~~a~~~~~~ 111 (131)
T 2m2b_A 100 INVEFAKGSKRD 111 (131)
T ss_dssp CCCEECCCSCCC
T ss_pred EEEEECCCCCCC
Confidence 999999765443
No 88
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.60 E-value=1e-15 Score=122.22 Aligned_cols=79 Identities=22% Similarity=0.116 Sum_probs=71.0
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
+..++|||+|||+++++++|+++|++||.|..+.++.++.+ +.+|||||+|.+.++|++||+.+ +..|+||+|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34689999999999999999999999999998888877665 78999999999999999999987 99999999999875
Q ss_pred e
Q 015694 378 V 378 (402)
Q Consensus 378 ~ 378 (402)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 3
No 89
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.8e-15 Score=125.54 Aligned_cols=80 Identities=14% Similarity=0.071 Sum_probs=71.3
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC---CCccCCEEEEEE
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL---SLISLSLIIKIV 375 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~---~~~i~Gr~i~V~ 375 (402)
..++++|||+|||+++++++|+++|++||.|.++.|+.+ +|||||+|.+.++|.+|++.+ +..|+||+|+|.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 445789999999999999999999999999999988753 799999999999999999976 578999999999
Q ss_pred Eeeeeccc
Q 015694 376 LGVYIISR 383 (402)
Q Consensus 376 ~~~~~~~~ 383 (402)
++..+..+
T Consensus 103 ~a~~k~~~ 110 (119)
T 2ad9_A 103 FSNHKELK 110 (119)
T ss_dssp ECSSSSCC
T ss_pred EccCCCCC
Confidence 98765543
No 90
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.2e-15 Score=120.09 Aligned_cols=83 Identities=20% Similarity=0.195 Sum_probs=72.4
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 298 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
...+.++|||+|||.++++++|+++|++||.| .+..+..++.+|||||+|.+.++|++||+.+ +..|+|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 34567999999999999999999999999987 3555544578999999999999999999988 9999999999999
Q ss_pred eeeeccc
Q 015694 377 GVYIISR 383 (402)
Q Consensus 377 ~~~~~~~ 383 (402)
+.....+
T Consensus 88 a~~~~~~ 94 (101)
T 2fc9_A 88 QGPRGSP 94 (101)
T ss_dssp CSSCCCC
T ss_pred cCCCCCC
Confidence 8776543
No 91
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.59 E-value=3.5e-15 Score=118.28 Aligned_cols=82 Identities=23% Similarity=0.377 Sum_probs=74.1
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
.+.++|||+|||.++++++|+++|++||.|..+.+..+ .++++|||||+|.+.++|++|++.+ +..|+|++|+|.++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34789999999999999999999999999999998874 4468999999999999999999987 999999999999987
Q ss_pred eecc
Q 015694 379 YIIS 382 (402)
Q Consensus 379 ~~~~ 382 (402)
....
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6544
No 92
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.59 E-value=9.1e-16 Score=117.11 Aligned_cols=74 Identities=22% Similarity=0.338 Sum_probs=68.1
Q ss_pred EEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEe
Q 015694 304 SIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLG 377 (402)
Q Consensus 304 ~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~ 377 (402)
+|||+|||.++++++|+++|++||.|..+.+..++.+ +++|||||+|.+.++|++|++..+..|+|++|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999998888754 8899999999999999999984499999999999764
No 93
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.59 E-value=3.1e-15 Score=125.83 Aligned_cols=85 Identities=19% Similarity=0.220 Sum_probs=77.4
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
..++++|||+|||.++++++|+++|++||.|..+.|+.+..+ +++|||||+|.+.++|++||+.+ +..|+|+.|+|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 345789999999999999999999999999999999888755 78999999999999999999987 9999999999999
Q ss_pred eeeeccc
Q 015694 377 GVYIISR 383 (402)
Q Consensus 377 ~~~~~~~ 383 (402)
+.....+
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9876654
No 94
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.59 E-value=2.3e-15 Score=118.61 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=67.4
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
+..||||||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.+.++|.+|++.+ +..++||.|+|.++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 57899999999999999999999999999998854 6899999999999999999999 99999999999988
No 95
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=8e-16 Score=124.87 Aligned_cols=83 Identities=16% Similarity=0.259 Sum_probs=75.8
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
..++|||+|||.++++++|+++|++||.|..+.+..++.+ +++|||||+|.+.++|.+|++.+ +..|+|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 4689999999999999999999999999999999988655 78999999999999999999988 999999999999987
Q ss_pred eeccc
Q 015694 379 YIISR 383 (402)
Q Consensus 379 ~~~~~ 383 (402)
....+
T Consensus 87 ~~~~~ 91 (104)
T 1p1t_A 87 SEKNK 91 (104)
T ss_dssp CTTHH
T ss_pred Cccch
Confidence 65443
No 96
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.7e-15 Score=121.32 Aligned_cols=81 Identities=14% Similarity=0.178 Sum_probs=72.4
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEeee
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGVY 379 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~~ 379 (402)
...++|||+|||+++++++|+++|++||.+ .+.|++++.++++|||||+|.+.++|++||+..+..|+||.|+|.++..
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNST 91 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCC
Confidence 446899999999999999999999999955 8999999866899999999999999999996559999999999988765
Q ss_pred ec
Q 015694 380 II 381 (402)
Q Consensus 380 ~~ 381 (402)
..
T Consensus 92 ~~ 93 (102)
T 1wez_A 92 AG 93 (102)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 97
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=3.5e-15 Score=123.15 Aligned_cols=78 Identities=12% Similarity=0.203 Sum_probs=71.4
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEeee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGVY 379 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~~ 379 (402)
+.++|||+|||+++++++|+++|+.| .|..+.|++++.++++|||||+|.+.++|++||...+..|+||.|+|..+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 45899999999999999999999999 8999999988877899999999999999999996559999999999987754
No 98
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.58 E-value=7.4e-16 Score=117.52 Aligned_cols=74 Identities=19% Similarity=0.248 Sum_probs=69.0
Q ss_pred EEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEe
Q 015694 304 SIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLG 377 (402)
Q Consensus 304 ~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~ 377 (402)
+|||+|||.++++++|+++|++||.|..+.+..++.+ +++|||||+|.+.++|.+|++.++..|+|++|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 5899999999999999999999999999998888665 7899999999999999999998899999999999875
No 99
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=4.3e-15 Score=121.12 Aligned_cols=76 Identities=12% Similarity=0.159 Sum_probs=68.0
Q ss_pred CCCCcEEEEccCCC-CCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC---CCccCCEEEEE
Q 015694 299 EAEGCSIYVRNLAF-TTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL---SLISLSLIIKI 374 (402)
Q Consensus 299 ~~~~~~lfVgnLp~-~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~---~~~i~Gr~i~V 374 (402)
..++++|||+|||+ ++++++|+++|++||.|.++.|+.+ +|||||+|.+.++|.+|++.+ +..|+||+|+|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 34578999999999 9999999999999999999988643 589999999999999999976 46799999999
Q ss_pred EEeee
Q 015694 375 VLGVY 379 (402)
Q Consensus 375 ~~~~~ 379 (402)
.++-.
T Consensus 87 ~~a~~ 91 (102)
T 1x4d_A 87 HLSQK 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 99874
No 100
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.58 E-value=1.8e-14 Score=120.95 Aligned_cols=83 Identities=23% Similarity=0.301 Sum_probs=76.2
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
..+++|||+|||.++++++|+++|++||.|..+.|..+..++++|||||+|.+.++|.+|++.+ +..|+|++|+|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 4478999999999999999999999999999999998885588999999999999999999977 999999999999987
Q ss_pred eecc
Q 015694 379 YIIS 382 (402)
Q Consensus 379 ~~~~ 382 (402)
....
T Consensus 113 ~~~~ 116 (124)
T 2kt5_A 113 SQID 116 (124)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 6543
No 101
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.4e-14 Score=118.72 Aligned_cols=81 Identities=23% Similarity=0.370 Sum_probs=71.8
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
...++|||+|||.++++++|+++|++||.|..+.|..+ ++++|||||+|.+.++|++||+.+ +..|+|++|+|.++.
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 44689999999999999999999999999999887433 357899999999999999999887 999999999999986
Q ss_pred eecc
Q 015694 379 YIIS 382 (402)
Q Consensus 379 ~~~~ 382 (402)
....
T Consensus 98 ~~~~ 101 (109)
T 1x4a_A 98 SGRG 101 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6543
No 102
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.57 E-value=2.7e-15 Score=121.49 Aligned_cols=82 Identities=17% Similarity=0.231 Sum_probs=75.2
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEeeee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGVYI 380 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~~~ 380 (402)
..++|||+|||.++++++|+++|++||.|..+.|..+..++++|||||+|.+.++|++|++ .++.|+|++|+|..+..+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIRK 86 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCcC
Confidence 4689999999999999999999999999999999999855889999999999999999999 899999999999999876
Q ss_pred ccc
Q 015694 381 ISR 383 (402)
Q Consensus 381 ~~~ 383 (402)
...
T Consensus 87 ~~~ 89 (102)
T 2xs2_A 87 QNL 89 (102)
T ss_dssp C--
T ss_pred cch
Confidence 553
No 103
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.57 E-value=3.6e-15 Score=127.88 Aligned_cols=81 Identities=12% Similarity=0.067 Sum_probs=74.3
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCC---eeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEE
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGP---IKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVL 376 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~---I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~ 376 (402)
.+.++|||+|||+++|+++|+++|++||. |..+.|.+++.++++|||||+|.+.++|++||+..+..|+||.|+|.+
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~ 121 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFK 121 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEE
Confidence 45789999999999999999999999999 889999999888899999999999999999999339999999999998
Q ss_pred eeee
Q 015694 377 GVYI 380 (402)
Q Consensus 377 ~~~~ 380 (402)
+...
T Consensus 122 a~~~ 125 (136)
T 2hgl_A 122 SHRT 125 (136)
T ss_dssp CCHH
T ss_pred CChH
Confidence 7544
No 104
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.57 E-value=1.9e-15 Score=117.29 Aligned_cols=72 Identities=14% Similarity=0.219 Sum_probs=65.0
Q ss_pred CcEEEEccCCCCC------CHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCE-EEE
Q 015694 302 GCSIYVRNLAFTT------TSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSL-IIK 373 (402)
Q Consensus 302 ~~~lfVgnLp~~v------te~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr-~i~ 373 (402)
+++|||+|||.++ ++++|+++|++||.|..+.+. +..++++|||||+|.+.++|++|++.+ |..|+|| +|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 3789999999999 779999999999999998876 444478999999999999999999998 9999999 887
Q ss_pred E
Q 015694 374 I 374 (402)
Q Consensus 374 V 374 (402)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 105
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.9e-15 Score=124.07 Aligned_cols=82 Identities=16% Similarity=0.173 Sum_probs=71.0
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEee
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGV 378 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~ 378 (402)
.+.++|||+|||+++++++|+++|+.||.|..+.++.+..+ +++|||||+|.+.++|.+||...+..|+||.|+|.++.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 34689999999999999999999999999987545554444 88999999999999999999933999999999999986
Q ss_pred eec
Q 015694 379 YII 381 (402)
Q Consensus 379 ~~~ 381 (402)
...
T Consensus 103 ~~~ 105 (124)
T 1wel_A 103 KKG 105 (124)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 106
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.56 E-value=1.6e-15 Score=122.67 Aligned_cols=78 Identities=21% Similarity=0.247 Sum_probs=70.2
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcC--CCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRS--NKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~--~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
..++|||+|||+++++++|+++|++|| |..+.|..++ .++++|||||+|.+.++|.+|| .+ +..|+|++|+|.++
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVA 95 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEec
Confidence 368999999999999999999999999 9999998886 3488999999999999999999 66 99999999999988
Q ss_pred eee
Q 015694 378 VYI 380 (402)
Q Consensus 378 ~~~ 380 (402)
..+
T Consensus 96 ~~~ 98 (100)
T 2j76_E 96 DQA 98 (100)
T ss_dssp CCS
T ss_pred cCC
Confidence 654
No 107
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.56 E-value=5.3e-15 Score=120.79 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=70.8
Q ss_pred CCcEEEEccCCCCC------CHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCE-EE
Q 015694 301 EGCSIYVRNLAFTT------TSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSL-II 372 (402)
Q Consensus 301 ~~~~lfVgnLp~~v------te~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr-~i 372 (402)
.+++|||+|||+.+ ++++|+++|++||.|..+.|. +..++++|||||+|.+.++|.+||..+ |..|+|| +|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 36899999999999 789999999999999999887 444578999999999999999999998 9999998 99
Q ss_pred EEEEeeee
Q 015694 373 KIVLGVYI 380 (402)
Q Consensus 373 ~V~~~~~~ 380 (402)
+|.++-..
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99987543
No 108
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=8.8e-15 Score=117.85 Aligned_cols=79 Identities=19% Similarity=0.237 Sum_probs=71.6
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
..+.++|||+|||.++++++|+++|++||.|..+.+.. .+|||||+|.+.++|.+|++.+ +..|+|++|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~-----~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK-----DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET-----TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 45578999999999999999999999999999988763 3789999999999999999887 99999999999998
Q ss_pred eeecc
Q 015694 378 VYIIS 382 (402)
Q Consensus 378 ~~~~~ 382 (402)
.....
T Consensus 87 ~~~~~ 91 (99)
T 2cpj_A 87 CHSAS 91 (99)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 77654
No 109
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.56 E-value=1.8e-14 Score=125.76 Aligned_cols=83 Identities=25% Similarity=0.335 Sum_probs=76.6
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
.+.++|||+|||.++++++|+++|++||.|..+.|..+..+ +++|||||+|.+.++|++||+.+ +..|+|+.|+|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999998876 78999999999999999999988 99999999999999
Q ss_pred eeecc
Q 015694 378 VYIIS 382 (402)
Q Consensus 378 ~~~~~ 382 (402)
.....
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 75443
No 110
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.4e-15 Score=118.87 Aligned_cols=76 Identities=22% Similarity=0.340 Sum_probs=70.2
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
++++|||+|||.++++++|+++|++||.|..+.|..++.+ +++|||||+|.+.++|++|++.+ +..|+|+.|++.+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 4689999999999999999999999999999999988665 78999999999999999999988 9999999887654
No 111
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.4e-14 Score=116.33 Aligned_cols=78 Identities=17% Similarity=0.229 Sum_probs=69.4
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
...++|||+|||.++++++|+++|++||.|. +.++.+ +++|||||+|.+.++|++|++.+ +..|+|++|+|.++.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3468999999999999999999999999997 666544 46899999999999999999987 999999999999987
Q ss_pred eec
Q 015694 379 YII 381 (402)
Q Consensus 379 ~~~ 381 (402)
.+.
T Consensus 93 ~~~ 95 (97)
T 2e5j_A 93 QQR 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 112
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.56 E-value=1.1e-14 Score=122.04 Aligned_cols=80 Identities=20% Similarity=0.328 Sum_probs=73.0
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
.+.++|||+|||.++++++|+++|++||.|..+.|..++.+ +++|||||+|.+.++|.+|| .+ +..|+|+.|+|.++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 34689999999999999999999999999999999988655 88999999999999999999 56 99999999999987
Q ss_pred eee
Q 015694 378 VYI 380 (402)
Q Consensus 378 ~~~ 380 (402)
-..
T Consensus 113 ~~~ 115 (124)
T 2jwn_A 113 RTN 115 (124)
T ss_dssp SCC
T ss_pred CCC
Confidence 643
No 113
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.56 E-value=1.5e-14 Score=127.61 Aligned_cols=84 Identities=19% Similarity=0.259 Sum_probs=75.9
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
.++++|||+|||.++++++|+.+|++||.|..+.|..++.+ +++|||||+|.+.++|.+||..+ +..|+|+.|+|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34789999999999999999999999999999999988655 78999999999999999999987 99999999999999
Q ss_pred eeeccc
Q 015694 378 VYIISR 383 (402)
Q Consensus 378 ~~~~~~ 383 (402)
.....+
T Consensus 150 ~~~~~~ 155 (165)
T 1rk8_A 150 FVKGPK 155 (165)
T ss_dssp EECC--
T ss_pred cCCCCC
Confidence 876654
No 114
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=114.96 Aligned_cols=78 Identities=22% Similarity=0.246 Sum_probs=70.4
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
....++|||+|||.++++++|+++|++||.|..+.+. ++||||+|.+.++|++|++.+ +..|+|++|+|.++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 3457899999999999999999999999999998884 559999999999999999987 99999999999999
Q ss_pred eeeccc
Q 015694 378 VYIISR 383 (402)
Q Consensus 378 ~~~~~~ 383 (402)
.....+
T Consensus 79 ~~~~~~ 84 (90)
T 2dnp_A 79 TKGQKK 84 (90)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 776543
No 115
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.56 E-value=1.3e-15 Score=120.46 Aligned_cols=79 Identities=25% Similarity=0.349 Sum_probs=70.1
Q ss_pred cEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeeee
Q 015694 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVYI 380 (402)
Q Consensus 303 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~~ 380 (402)
++|||+|||.++++++|+++|++||.|..+.+..++.+ +++|||||+|.+.+ |.+|+..+ +..|+|++|+|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999888765 78999999999999 99999998 99999999999998776
Q ss_pred cc
Q 015694 381 IS 382 (402)
Q Consensus 381 ~~ 382 (402)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 116
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2e-14 Score=118.64 Aligned_cols=80 Identities=18% Similarity=0.285 Sum_probs=72.3
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCcc--------CC
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLIS--------LS 369 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i--------~G 369 (402)
..+.++|||+|||.++++++|+++|++||.|..+.|..+..++++|||||+|.+.++|++||+.+ +..| .|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 34578999999999999999999999999999999999985588999999999999999999988 8888 57
Q ss_pred EEEEEEEee
Q 015694 370 LIIKIVLGV 378 (402)
Q Consensus 370 r~i~V~~~~ 378 (402)
++|+|.++-
T Consensus 102 ~~l~v~~a~ 110 (114)
T 1x5o_A 102 EPLLCKFSG 110 (114)
T ss_dssp SCBEEEECC
T ss_pred CceeEEccC
Confidence 778888765
No 117
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.55 E-value=1.2e-14 Score=127.02 Aligned_cols=83 Identities=17% Similarity=0.292 Sum_probs=76.1
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
...++|||+|||+++++++|+++|++||.|..+.|..++.+ +++|||||+|.+.++|.+||+.+ +..|+|++|+|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999999888655 89999999999999999999988 99999999999999
Q ss_pred eeecc
Q 015694 378 VYIIS 382 (402)
Q Consensus 378 ~~~~~ 382 (402)
.....
T Consensus 148 ~~~~~ 152 (158)
T 2kn4_A 148 RYGRP 152 (158)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 76544
No 118
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.55 E-value=8e-15 Score=120.54 Aligned_cols=78 Identities=27% Similarity=0.426 Sum_probs=70.2
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
....++|||+|||.++++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.+ +..|+|+.|+|.++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 3457899999999999999999999999999999885 789999999999999999987 99999999999998
Q ss_pred eeeccc
Q 015694 378 VYIISR 383 (402)
Q Consensus 378 ~~~~~~ 383 (402)
.....|
T Consensus 101 ~~~~~r 106 (108)
T 2jvo_A 101 KLPAKR 106 (108)
T ss_dssp SCCC--
T ss_pred cCCCCC
Confidence 776554
No 119
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.5e-14 Score=116.05 Aligned_cols=79 Identities=18% Similarity=0.240 Sum_probs=70.5
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccC--CEEEEEE
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISL--SLIIKIV 375 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~--Gr~i~V~ 375 (402)
....++|||+|||.++++++|+++|++||.|..+.+.. .+|||||+|.+.++|++|++.+ +..|+ |++|+|.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK-----GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS-----SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC-----CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 34568999999999999999999999999999987743 2789999999999999999987 99999 9999999
Q ss_pred Eeeeecc
Q 015694 376 LGVYIIS 382 (402)
Q Consensus 376 ~~~~~~~ 382 (402)
++..+..
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9877654
No 120
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.55 E-value=2.8e-15 Score=122.90 Aligned_cols=82 Identities=12% Similarity=0.011 Sum_probs=74.1
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCC---eeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEE
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGP---IKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVL 376 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~---I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~ 376 (402)
.+.++|||+|||+++|+++|+++|+.||. |..+.|..++.++++|||||+|.+.++|++||+..+..|+||.|+|.+
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~ 88 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE 88 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEE
Confidence 45789999999999999999999999998 888999888777899999999999999999999449999999999998
Q ss_pred eeeec
Q 015694 377 GVYII 381 (402)
Q Consensus 377 ~~~~~ 381 (402)
+....
T Consensus 89 a~~~~ 93 (107)
T 2lmi_A 89 INNED 93 (107)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 76543
No 121
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.9e-14 Score=114.31 Aligned_cols=77 Identities=19% Similarity=0.267 Sum_probs=69.7
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
....++|||+|||.++++++|+++|++||.|..+.+. ++||||+|.+.++|.+|++.+ +..|+|++|+|.++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 3457899999999999999999999999999998884 559999999999999999987 99999999999999
Q ss_pred eeecc
Q 015694 378 VYIIS 382 (402)
Q Consensus 378 ~~~~~ 382 (402)
.....
T Consensus 80 ~~~~~ 84 (92)
T 2dgt_A 80 TSRLR 84 (92)
T ss_dssp SCCCS
T ss_pred cCCCC
Confidence 76554
No 122
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.4e-14 Score=111.71 Aligned_cols=73 Identities=27% Similarity=0.316 Sum_probs=67.0
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC--CCccCCEEEEEEEe
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL--SLISLSLIIKIVLG 377 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~--~~~i~Gr~i~V~~~ 377 (402)
...++|||+|||.++++++|+++|++||.|..+.+.. .+|||||+|.+.++|.+|++.+ +..|+|++|+|.++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 4568999999999999999999999999999988864 4799999999999999999975 89999999999886
No 123
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=5.2e-15 Score=124.74 Aligned_cols=81 Identities=20% Similarity=0.143 Sum_probs=72.9
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCe----eEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEE
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPI----KKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIV 375 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I----~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~ 375 (402)
.+.++|||+|||+++|+++|+++|++||.| ..+.|+.+..++++|||||+|.+.++|++||+..+..|+||.|+|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 457899999999999999999999999986 6888888876689999999999999999999988999999999988
Q ss_pred Eeeee
Q 015694 376 LGVYI 380 (402)
Q Consensus 376 ~~~~~ 380 (402)
.+...
T Consensus 101 ~a~~~ 105 (123)
T 2dha_A 101 RSTAA 105 (123)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 77543
No 124
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=123.37 Aligned_cols=80 Identities=15% Similarity=0.090 Sum_probs=70.4
Q ss_pred CCcEEEEccCCCCCCHHHHH----HHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEE
Q 015694 301 EGCSIYVRNLAFTTTSTELE----EAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIV 375 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~----~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~ 375 (402)
.+++|||+||++++++++|+ ++|++||.|..+.+ ...++++|||||+|.+.++|.+|++.+ |..|.||.|+|.
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i--~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVV--DLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEE--CCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEe--ccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 46899999999999999876 69999999988765 334478999999999999999999999 999999999999
Q ss_pred Eeeeecc
Q 015694 376 LGVYIIS 382 (402)
Q Consensus 376 ~~~~~~~ 382 (402)
++.....
T Consensus 106 ~a~~~~~ 112 (127)
T 2a3j_A 106 FSETPQS 112 (127)
T ss_dssp ECCCCCH
T ss_pred EccCcch
Confidence 9876544
No 125
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.55 E-value=5.7e-15 Score=124.96 Aligned_cols=79 Identities=19% Similarity=0.120 Sum_probs=71.4
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCee--EEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEe
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIK--KNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLG 377 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~--~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~ 377 (402)
.+.++|||+|||+++|+++|+++|++| .|. .+.|..++.++++|||||+|.+.++|++||+.++..|+||.|+|..+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 118 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence 346889999999999999999999999 566 88888888788999999999999999999998899999999999876
Q ss_pred ee
Q 015694 378 VY 379 (402)
Q Consensus 378 ~~ 379 (402)
..
T Consensus 119 ~~ 120 (126)
T 2hgm_A 119 SQ 120 (126)
T ss_dssp CH
T ss_pred CH
Confidence 43
No 126
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=2.9e-14 Score=116.89 Aligned_cols=76 Identities=16% Similarity=0.106 Sum_probs=70.0
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCC-----EEEEE
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLS-----LIIKI 374 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~G-----r~i~V 374 (402)
..++|||+|||+++++++|+++|++||.|..+.|..+ |||||+|.+.++|++||+.+ +..|+| +.|+|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 4689999999999999999999999999999988654 89999999999999999988 999999 99999
Q ss_pred EEeeeecc
Q 015694 375 VLGVYIIS 382 (402)
Q Consensus 375 ~~~~~~~~ 382 (402)
.++..+..
T Consensus 88 ~~a~~~~~ 95 (108)
T 1x4c_A 88 KVDGPRSP 95 (108)
T ss_dssp EESSCCSC
T ss_pred EeCCCCCC
Confidence 99877554
No 127
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.55 E-value=1.9e-14 Score=115.89 Aligned_cols=73 Identities=21% Similarity=0.423 Sum_probs=67.4
Q ss_pred CCCcEEEEccCCC-CCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 300 AEGCSIYVRNLAF-TTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 300 ~~~~~lfVgnLp~-~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
+++++|||+|||. ++++++|+++|++||.|..+.+ .+|||||+|.+.++|.+|++.+ +..|+|++|+|.++
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI-------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE-------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 3478999999998 9999999999999999999887 3799999999999999999988 99999999999987
Q ss_pred ee
Q 015694 378 VY 379 (402)
Q Consensus 378 ~~ 379 (402)
..
T Consensus 93 ~~ 94 (97)
T 2xnq_A 93 SS 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 128
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=120.49 Aligned_cols=77 Identities=17% Similarity=0.172 Sum_probs=68.4
Q ss_pred CCCCcEEEEccCCCC-CCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC---CCccCCEEEEE
Q 015694 299 EAEGCSIYVRNLAFT-TTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL---SLISLSLIIKI 374 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~-vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~---~~~i~Gr~i~V 374 (402)
...+++|||+|||++ +++++|+++|++||.|.++.|+ +.+|||||+|.+.++|.+|++.+ +..|+||+|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-----RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345789999999998 9999999999999999999885 25799999999999999999975 57799999999
Q ss_pred EEeeee
Q 015694 375 VLGVYI 380 (402)
Q Consensus 375 ~~~~~~ 380 (402)
.++-.+
T Consensus 97 ~~a~~~ 102 (112)
T 1x4f_A 97 DLSEKY 102 (112)
T ss_dssp EEECSC
T ss_pred EECccc
Confidence 998543
No 129
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=114.52 Aligned_cols=77 Identities=17% Similarity=0.269 Sum_probs=70.5
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
.+.++|||+|||.++++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.+ +..|+|++|+|.++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 347899999999999999999999999999999885 689999999999999999888 999999999999987
Q ss_pred eeccc
Q 015694 379 YIISR 383 (402)
Q Consensus 379 ~~~~~ 383 (402)
....+
T Consensus 79 ~~~~~ 83 (90)
T 2dnq_A 79 NKSKA 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76654
No 130
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.54 E-value=1.1e-14 Score=115.54 Aligned_cols=79 Identities=22% Similarity=0.225 Sum_probs=63.6
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEeee
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGVY 379 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~~ 379 (402)
...++|||||||+++|+++|+++|++||.|.++.|+.+ ++|||||+|.+.++|++ +....+.++|++|+|.++.+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~-~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS-LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH-HTTCEEEETTEEEEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH-HcCCCcccCCEEEEEEEcCC
Confidence 44789999999999999999999999999999988654 68999999999999984 33335677899999999987
Q ss_pred eccc
Q 015694 380 IISR 383 (402)
Q Consensus 380 ~~~~ 383 (402)
+..+
T Consensus 84 k~~~ 87 (89)
T 3d2w_A 84 KHNK 87 (89)
T ss_dssp ----
T ss_pred CCcC
Confidence 6543
No 131
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.54 E-value=9.2e-15 Score=118.09 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=67.9
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVY 379 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~ 379 (402)
.+++|||+|||.++++++|+++|++||.|..+.+. +++|||||+|.+.++|.+|+..+ +..|+|++|+|.++..
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 46899999999999999999999999999998886 36899999999999999999987 9999999999988753
No 132
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.54 E-value=9.5e-15 Score=136.10 Aligned_cols=80 Identities=19% Similarity=0.177 Sum_probs=73.6
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCC--CeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFG--PIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG--~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
..++|||+||++++|+++|+++|++|| .|..+.|++++.+ +++|||||+|.+.++|++||+.+ +..|+||+|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 468999999999999999999999999 9999999999766 89999999999999999999988 9999999999999
Q ss_pred eeee
Q 015694 377 GVYI 380 (402)
Q Consensus 377 ~~~~ 380 (402)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8643
No 133
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.4e-14 Score=118.78 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=72.0
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
...++|||+|||.++++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|++.+ +..|+|++|+|.++.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 45789999999999999999999999999999988654 789999999999999999887 999999999999987
Q ss_pred eeccc
Q 015694 379 YIISR 383 (402)
Q Consensus 379 ~~~~~ 383 (402)
....+
T Consensus 98 ~~~~~ 102 (109)
T 1x4g_A 98 ESPDM 102 (109)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 76553
No 134
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=4.4e-14 Score=113.74 Aligned_cols=77 Identities=21% Similarity=0.284 Sum_probs=69.4
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcC--CCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEE
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIF--GPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIV 375 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~f--G~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~ 375 (402)
....++|||+|||.++++++|+++|++| |.|..+.+ .+|||||+|.+.++|.+||..+ +..|+|++|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK-------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE-------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE-------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3457899999999999999999999999 89988766 4789999999999999999977 999999999999
Q ss_pred Eeeeecc
Q 015694 376 LGVYIIS 382 (402)
Q Consensus 376 ~~~~~~~ 382 (402)
++.....
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpd_A 85 LAKPVDK 91 (99)
T ss_dssp CCCCCCC
T ss_pred ECCCCCC
Confidence 9876654
No 135
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.1e-14 Score=119.17 Aligned_cols=83 Identities=16% Similarity=0.197 Sum_probs=73.9
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCC-eeEEEEE-EcCCC-CcccEEEEEeCCHHHHHHHHHhC---CCccCCEEEE
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGP-IKKNGVQ-VRSNK-QGYCFGFVAFETPGSVQSALEVL---SLISLSLIIK 373 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~-I~~~~v~-~~~~~-~~~gfgFVeF~~~~~a~~Al~~~---~~~i~Gr~i~ 373 (402)
.+.++|||+|||.++++++|+++|++||. |..+.+. .++.+ +++|||||+|.+.++|.+|++.+ +..|+|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 34789999999999999999999999998 9999887 55554 78999999999999999999986 4899999999
Q ss_pred EEEeeeecc
Q 015694 374 IVLGVYIIS 382 (402)
Q Consensus 374 V~~~~~~~~ 382 (402)
|.++.....
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999976654
No 136
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.53 E-value=9.8e-15 Score=120.81 Aligned_cols=77 Identities=17% Similarity=0.101 Sum_probs=68.6
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCC-CeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFG-PIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG-~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
..++|||+|||+++++++|+++|++|| .|..+.|..+ +++|||||+|.+.++|++||+.+ +..|+||+|+|.++.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 368999999999999999999999999 8998776322 47899999999999999999988 999999999999986
Q ss_pred ee
Q 015694 379 YI 380 (402)
Q Consensus 379 ~~ 380 (402)
..
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 44
No 137
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.4e-14 Score=114.86 Aligned_cols=82 Identities=17% Similarity=0.170 Sum_probs=71.7
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
....++|||+|||.++++++|+++|+.|+ .+.++.+..+ +++|||||+|.+.++|++||+.+ +..|+|++|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34578999999999999999999999886 4556777655 78999999999999999999987 9999999999999
Q ss_pred eeeeccc
Q 015694 377 GVYIISR 383 (402)
Q Consensus 377 ~~~~~~~ 383 (402)
+.....+
T Consensus 89 a~~~~~~ 95 (102)
T 2fc8_A 89 AKPKGEG 95 (102)
T ss_dssp CCCCCSS
T ss_pred ecCCCCC
Confidence 9876544
No 138
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.53 E-value=6.3e-15 Score=126.09 Aligned_cols=84 Identities=17% Similarity=0.285 Sum_probs=76.2
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
.+.++|||+|||.++++++|+++|++||.|..+.|..++.+ +++|||||+|.+.++|++||+.+ +..|+|++|+|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 34689999999999999999999999999999999887655 88999999999999999999988 99999999999998
Q ss_pred eeeccc
Q 015694 378 VYIISR 383 (402)
Q Consensus 378 ~~~~~~ 383 (402)
.....+
T Consensus 125 ~~~~~~ 130 (135)
T 2lea_A 125 RYGRPP 130 (135)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 765543
No 139
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.53 E-value=2.8e-14 Score=115.82 Aligned_cols=77 Identities=27% Similarity=0.304 Sum_probs=69.9
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
...++|||+|||.++++++|+++|++||.|..+.+. +|||||+|.+.++|++||+.+ +..|+|+.|+|.++.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 346899999999999999999999999999998873 579999999999999999987 999999999999997
Q ss_pred eeccc
Q 015694 379 YIISR 383 (402)
Q Consensus 379 ~~~~~ 383 (402)
....+
T Consensus 82 ~~~~~ 86 (103)
T 2dgu_A 82 PPDQK 86 (103)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 76553
No 140
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=1.1e-14 Score=116.33 Aligned_cols=80 Identities=15% Similarity=0.153 Sum_probs=70.3
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
..+.++|||+|||.++++++|+++|++||.|..+ +..++++|||||+|.+.++|.+|++.+ +..|+|++|+|.++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 3457899999999999999999999999988764 334478999999999999999999988 99999999999998
Q ss_pred eeecc
Q 015694 378 VYIIS 382 (402)
Q Consensus 378 ~~~~~ 382 (402)
..+..
T Consensus 89 ~~~~~ 93 (96)
T 1fjc_A 89 GEKGG 93 (96)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 66543
No 141
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.53 E-value=2.7e-14 Score=118.04 Aligned_cols=81 Identities=19% Similarity=0.265 Sum_probs=72.7
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVY 379 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~ 379 (402)
.+++|||+|||.++++++|+++|++||.|..+.+..+. .++|||||+|.+.++|.+|+..+ +..|+|+.|+|.++..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP--ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST--TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC--CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 36899999999999999999999999999999887553 45899999999999999999987 9999999999999876
Q ss_pred eccc
Q 015694 380 IISR 383 (402)
Q Consensus 380 ~~~~ 383 (402)
...+
T Consensus 85 ~~~~ 88 (115)
T 3lqv_A 85 NRAF 88 (115)
T ss_dssp HHHT
T ss_pred Chhh
Confidence 5543
No 142
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.52 E-value=3e-15 Score=120.94 Aligned_cols=80 Identities=23% Similarity=0.221 Sum_probs=70.2
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
..++|||+|||.++++++|+++|++||.|.. .++.+..+ +++|||||+|.+.++|++||+ + +..|+|++|+|.++.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4689999999999999999999999999877 44455443 789999999999999999999 7 999999999999987
Q ss_pred eecc
Q 015694 379 YIIS 382 (402)
Q Consensus 379 ~~~~ 382 (402)
.+..
T Consensus 94 ~~~~ 97 (101)
T 1fj7_A 94 GRDG 97 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6544
No 143
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=9.6e-15 Score=120.72 Aligned_cols=84 Identities=21% Similarity=0.243 Sum_probs=70.9
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcC-CCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRS-NKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~-~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
...++|||+|||.++++++|+++|++||.|..+.+..+. .++++|||||+|.+.++|++||+.+ +..|+|++|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 346899999999999999999999999998433222221 3478999999999999999999998 99999999999999
Q ss_pred eeeccc
Q 015694 378 VYIISR 383 (402)
Q Consensus 378 ~~~~~~ 383 (402)
.....+
T Consensus 103 ~~~~~~ 108 (115)
T 2cpx_A 103 KNKKQR 108 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCC
Confidence 876554
No 144
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.52 E-value=9.3e-15 Score=116.98 Aligned_cols=81 Identities=22% Similarity=0.224 Sum_probs=71.5
Q ss_pred CCCcEEEEccCCCCCCHHHHH----HHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEE
Q 015694 300 AEGCSIYVRNLAFTTTSTELE----EAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKI 374 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~----~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V 374 (402)
..+++|||+|||.++++++|+ ++|++||.|..+.+. +.++++|||||+|.+.++|.+|++.+ +..|+|++|+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~--~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS--RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC--HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE--cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 347899999999999999999 999999999998764 22357899999999999999999987 99999999999
Q ss_pred EEeeeecc
Q 015694 375 VLGVYIIS 382 (402)
Q Consensus 375 ~~~~~~~~ 382 (402)
.++.....
T Consensus 84 ~~a~~~~~ 91 (97)
T 1nu4_A 84 QYAKTDSD 91 (97)
T ss_dssp EECSSCCT
T ss_pred EEccCCCc
Confidence 99876543
No 145
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.7e-14 Score=115.73 Aligned_cols=77 Identities=19% Similarity=0.383 Sum_probs=69.3
Q ss_pred CCCCcEEEEccCCC-CCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEE
Q 015694 299 EAEGCSIYVRNLAF-TTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVL 376 (402)
Q Consensus 299 ~~~~~~lfVgnLp~-~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~ 376 (402)
..+.++|||+|||+ ++++++|+++|++||.|..+.+ .+|||||+|.+.++|.+|++.+ +..++|++|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI-------KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE-------ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 35578999999998 9999999999999999999888 3789999999999999999987 9999999999999
Q ss_pred eeeecc
Q 015694 377 GVYIIS 382 (402)
Q Consensus 377 ~~~~~~ 382 (402)
+.....
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 976544
No 146
>1q42_A MTR2, mRNA transport regulator MTR2; NTF2-fold, nuclear export, translation; 1.75A {Candida albicans} SCOP: d.17.4.2 PDB: 1q40_A
Probab=99.52 E-value=2.1e-14 Score=126.23 Aligned_cols=102 Identities=8% Similarity=0.019 Sum_probs=88.2
Q ss_pred CCHHHHHHHHHHHHHHHHccCcc-----ccc------ccc----cCCCeeeccCCCCcccee------ccHHHHHHHHhc
Q 015694 10 PSAQVVGNAFVEQYYHILHQSPG-----LVH------RFY----QDSSLLSRPDSNGSMTTV------TTMKAINDRILS 68 (402)
Q Consensus 10 ~~~~~vg~~FV~~YY~~l~~~p~-----~L~------~fY----~~~S~l~~~~~~~~~~~~------~g~~~I~~~i~s 68 (402)
-+..+.++.|++.||..||+.+. .|. ++| .+++.++|+|+ .+ .|+++|.+++..
T Consensus 23 ~~~~r~aE~F~K~yyasLD~~r~~~~~~ql~~v~~f~~ly~~~l~~~a~liwNGn-----p~~~~~~~~gr~~fqk~w~~ 97 (201)
T 1q42_A 23 QDPTQQLEPFLKRFLASLDLLYTQPTSQPFPNVESYATQLGSNLKRSSAIIVNGQ-----PIIPSPQEDCKLQFQKKWLQ 97 (201)
T ss_dssp CCGGGTHHHHHHHHHHHHSCCCCCCTTCSSCCHHHHHTTTTTTEEEEEEEEETTE-----ECCCCSSCCHHHHHHHHHHT
T ss_pred CCcchhHHHHHHHHHHHhcccccccchhhccchhHHHHHhccccCCccEEEEcCc-----ccccccccccHHHHHHHHHh
Confidence 35678899999999999998887 888 888 78899999998 56 899999999999
Q ss_pred CCCCcceEEEeeeEeeeeCC-CcEEEEEEEEEEeCCCcccceeEEEEeeEc
Q 015694 69 LNYEDYTAEIKTADAQDSYE-KGVIVLVTGCLTGKDNVKKKFTQTFFLAPQ 118 (402)
Q Consensus 69 l~~~~~~~~I~~~d~q~s~~-~~vlv~V~G~l~~~~~~~r~F~qtF~L~~~ 118 (402)
|| .+.|.|.++|||+..+ +.+||+|.|.|+.+++.+++|.|+|.|..+
T Consensus 98 lP--~SqHqL~SlDahpIpGq~T~lI~asGkVrFDesgr~~fgQsf~Lta~ 146 (201)
T 1q42_A 98 TP--LSSHQLTSYDGHLIPGTGTFVVHFSAKVRFDQSGRNRLGESADLFQE 146 (201)
T ss_dssp SC--CEEEEEEEEEEEEETTTTEEEEEEEEEEEEBCSSCCTTSCCC-----
T ss_pred CC--CcceeeeeeecceeCCCcEEEEEEeEEEEECCCCcCcCCCcEEEecc
Confidence 99 4589999999999965 679999999999999999999999999866
No 147
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=1.4e-14 Score=119.67 Aligned_cols=76 Identities=20% Similarity=0.205 Sum_probs=68.7
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
...++|||+|||+++++++|+++|++||.|..+.|. +.+|||||+|.+.++|++||+.+ +..|+|++|+|.++.
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP-----EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC-----SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-----CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 346899999999999999999999999999988764 25789999999999999999988 999999999999986
Q ss_pred ee
Q 015694 379 YI 380 (402)
Q Consensus 379 ~~ 380 (402)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 148
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=1.6e-14 Score=116.72 Aligned_cols=77 Identities=27% Similarity=0.428 Sum_probs=70.8
Q ss_pred cEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeeeec
Q 015694 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVYII 381 (402)
Q Consensus 303 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~~~ 381 (402)
++|||+|||.++++++|+++|++||.|..+.+..+ ++|||||+|.+.++|.+|++.+ +..|+|+.|+|.++....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 58999999999999999999999999999988766 6899999999999999999988 999999999999997766
Q ss_pred cc
Q 015694 382 SR 383 (402)
Q Consensus 382 ~~ 383 (402)
.+
T Consensus 77 ~~ 78 (101)
T 2hvz_A 77 RR 78 (101)
T ss_dssp CS
T ss_pred Cc
Confidence 43
No 149
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.51 E-value=7.7e-14 Score=125.03 Aligned_cols=82 Identities=21% Similarity=0.290 Sum_probs=75.0
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEee
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGV 378 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~ 378 (402)
.+.++|||+|||+++++++|+++|++||.|..+.|+.+..+ +++|||||+|.+.++|.+||+.++..|+|+.|+|.++.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~ 90 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV 90 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeeccc
Confidence 45789999999999999999999999999999999998765 78999999999999999999988999999999999987
Q ss_pred eec
Q 015694 379 YII 381 (402)
Q Consensus 379 ~~~ 381 (402)
...
T Consensus 91 ~~~ 93 (196)
T 1l3k_A 91 SRE 93 (196)
T ss_dssp C--
T ss_pred Ccc
Confidence 654
No 150
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.3e-14 Score=113.95 Aligned_cols=77 Identities=18% Similarity=0.188 Sum_probs=68.4
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCC-eeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-C-CccCCEEEEEEEe
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGP-IKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-S-LISLSLIIKIVLG 377 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~-I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~-~~i~Gr~i~V~~~ 377 (402)
..++|||+|||.++++++|+++|++||. |..+.+ .++|||||+|.+.++|++|++.+ + ..|+|++|+|.++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE------EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE------cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 4689999999999999999999999999 665554 25799999999999999999988 8 9999999999999
Q ss_pred eeeccc
Q 015694 378 VYIISR 383 (402)
Q Consensus 378 ~~~~~~ 383 (402)
.....+
T Consensus 81 ~~~~~~ 86 (93)
T 2cqh_A 81 VSKKLR 86 (93)
T ss_dssp CCCCCC
T ss_pred cCcccc
Confidence 876654
No 151
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.3e-13 Score=110.57 Aligned_cols=76 Identities=25% Similarity=0.267 Sum_probs=68.4
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
...++|||+|| ++++++|+++|++||.|..+.|. +.+|||||+|.+.++|.+||..+ +..|+|++|+|.++.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 45789999996 89999999999999999998873 36899999999999999999998 999999999999987
Q ss_pred eecc
Q 015694 379 YIIS 382 (402)
Q Consensus 379 ~~~~ 382 (402)
....
T Consensus 86 ~~~~ 89 (97)
T 1x5p_A 86 KQPM 89 (97)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6654
No 152
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.25 E-value=1.7e-15 Score=125.77 Aligned_cols=86 Identities=19% Similarity=0.204 Sum_probs=77.6
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeE--------EEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccC
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKK--------NGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISL 368 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~--------~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~ 368 (402)
..+.++|||+|||.++++++|+++|++||.|.. +.|..++.+ +++|||||+|.+.++|++||+.+ +..|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345789999999999999999999999999998 888887655 78999999999999999999988 99999
Q ss_pred CEEEEEEEeeeecccc
Q 015694 369 SLIIKIVLGVYIISRT 384 (402)
Q Consensus 369 Gr~i~V~~~~~~~~~~ 384 (402)
|++|+|.++.....+.
T Consensus 84 g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 84 GNPIKVSFATRRADFN 99 (116)
Confidence 9999999998776653
No 153
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.50 E-value=6.8e-14 Score=114.90 Aligned_cols=73 Identities=14% Similarity=0.232 Sum_probs=67.8
Q ss_pred CCcEEEEccCCCC-CCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 301 EGCSIYVRNLAFT-TTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 301 ~~~~lfVgnLp~~-vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
..++|||+|||.+ +++++|+++|++||.|..+.+ .+|||||+|.+.++|++||+.+ +..|+|++|+|.++.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 4689999999999 999999999999999999887 5799999999999999999887 999999999999987
Q ss_pred ee
Q 015694 379 YI 380 (402)
Q Consensus 379 ~~ 380 (402)
..
T Consensus 99 ~~ 100 (110)
T 1wf1_A 99 EP 100 (110)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 154
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.49 E-value=4.9e-14 Score=122.19 Aligned_cols=77 Identities=30% Similarity=0.428 Sum_probs=70.4
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
...++|||+|||+++++++|+++|++||.|..+.+..+ ++|||||+|.+.++|.+||..+ +..|+|++|+|.++.
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 45789999999999999999999999999999988654 5899999999999999999987 999999999999986
Q ss_pred ee
Q 015694 379 YI 380 (402)
Q Consensus 379 ~~ 380 (402)
..
T Consensus 147 ~~ 148 (150)
T 2i2y_A 147 GE 148 (150)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 155
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.49 E-value=3.4e-14 Score=122.20 Aligned_cols=83 Identities=14% Similarity=0.243 Sum_probs=70.8
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEE------EEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEE
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKN------GVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIK 373 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~------~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~ 373 (402)
.+++|||+|||+++++++|+++|++||.|..+ .+.....++++|||||+|.+.++|.+||..+ +..|+|+.|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 36899999999999999999999999998764 2333344578999999999999999999987 9999999999
Q ss_pred EEEeeeeccc
Q 015694 374 IVLGVYIISR 383 (402)
Q Consensus 374 V~~~~~~~~~ 383 (402)
|.++.....+
T Consensus 124 V~~a~~~~~~ 133 (143)
T 3egn_A 124 VQFARSARPK 133 (143)
T ss_dssp EEECCCSCC-
T ss_pred EEECCCCCCc
Confidence 9999765443
No 156
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.48 E-value=5.5e-14 Score=125.83 Aligned_cols=83 Identities=23% Similarity=0.301 Sum_probs=76.3
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
..+++|||+|||+++++++|+++|++||.|..+.|..+..++++|||||+|.+.++|.+||+.+ +..|+|+.|+|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4578999999999999999999999999999999988885588999999999999999999988 999999999999987
Q ss_pred eecc
Q 015694 379 YIIS 382 (402)
Q Consensus 379 ~~~~ 382 (402)
....
T Consensus 166 ~~~~ 169 (177)
T 2f3j_A 166 SQID 169 (177)
T ss_dssp SGGG
T ss_pred CCCC
Confidence 6543
No 157
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.48 E-value=8.2e-15 Score=126.13 Aligned_cols=83 Identities=13% Similarity=0.126 Sum_probs=72.8
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEee
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGV 378 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~ 378 (402)
....++|||+|||+++|+++|+++|++|| |..+.|+++++++++|||||+|.+.++|++||...+..|+||.|+|.++.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 34578999999999999999999999999 66899988877789999999999999999999444999999999998877
Q ss_pred eecc
Q 015694 379 YIIS 382 (402)
Q Consensus 379 ~~~~ 382 (402)
....
T Consensus 122 ~~~~ 125 (139)
T 2hgn_A 122 TTGA 125 (139)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 6544
No 158
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.48 E-value=1.1e-13 Score=127.00 Aligned_cols=91 Identities=23% Similarity=0.227 Sum_probs=80.0
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVY 379 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~ 379 (402)
.++|||||||+++|+++|+++|++||.|.++.|+.++.+ +++|||||+|.+.++|.+||+.+ +..++|+.|++.++..
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~ 94 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 94 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccc
Confidence 579999999999999999999999999999999998776 88999999999999999999988 9999999999998876
Q ss_pred eccc-----ceEEEeeec
Q 015694 380 IISR-----TFIEVQILV 392 (402)
Q Consensus 380 ~~~~-----~~~~~~~~~ 392 (402)
.... ..|-|.+|+
T Consensus 95 ~~~~~~~~~~~l~v~nl~ 112 (213)
T 4f02_A 95 DPSLRKSGVGNIFIKNLD 112 (213)
T ss_dssp CTHHHHHCTTEEEEESCC
T ss_pred cccccccccccceECCcc
Confidence 5432 345555555
No 159
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.48 E-value=7.6e-14 Score=117.26 Aligned_cols=77 Identities=14% Similarity=0.202 Sum_probs=68.7
Q ss_pred cEEEEccC----CCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCC----HHH----HHHHHH--hC-CCc
Q 015694 303 CSIYVRNL----AFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFET----PGS----VQSALE--VL-SLI 366 (402)
Q Consensus 303 ~~lfVgnL----p~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~----~~~----a~~Al~--~~-~~~ 366 (402)
+.|||+|| ++.+++.+|+++|+.||.|.++.++.|+.+ +++|||||+|.| ++. |.+|+. .+ +..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999999999999 999999999996 322 788888 65 999
Q ss_pred cCCEEEEEEEeee
Q 015694 367 SLSLIIKIVLGVY 379 (402)
Q Consensus 367 i~Gr~i~V~~~~~ 379 (402)
|+||+|+|.+.--
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998644
No 160
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.47 E-value=1.3e-13 Score=125.10 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=73.3
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEeee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGVY 379 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~~ 379 (402)
..++|||+|||+++++++|+++|++||.|..++|..+..++++|||||+|.+.++|.+||..++..|+||+|+|.+...
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 3589999999999999999999999999999999988777889999999999999999999888899999999987644
No 161
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.47 E-value=2.7e-13 Score=117.73 Aligned_cols=78 Identities=19% Similarity=0.296 Sum_probs=72.8
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
..++|||+|||.++++++|+++|++||.|..+.+..+..+ .++|||||+|.+.++|.+|+..+ +..|+|++|+|.++-
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 4679999999999999999999999999999999988655 78999999999999999999987 999999999999874
No 162
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.47 E-value=9.3e-14 Score=109.50 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=66.9
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVY 379 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~ 379 (402)
..++|||+|||+++++++|+++|++| .|..+.+. +++|||||+|.+.++|++|++.+ +..++|++|+|.++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 36899999999999999999999999 99988773 47899999999999999999988 9999999999998744
No 163
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.46 E-value=3.1e-13 Score=117.48 Aligned_cols=91 Identities=21% Similarity=0.237 Sum_probs=79.3
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVY 379 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~ 379 (402)
.++|||+|||.++++++|+++|++||.|..+.+..+..+ +++|||||+|.+.++|.+|++.+ +..++|++|+|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 579999999999999999999999999999999988744 88999999999999999999977 9999999999999875
Q ss_pred ecc---cceEEEeeec
Q 015694 380 IIS---RTFIEVQILV 392 (402)
Q Consensus 380 ~~~---~~~~~~~~~~ 392 (402)
... ...|-+.+|+
T Consensus 82 ~~~~~~~~~l~v~nl~ 97 (167)
T 1fxl_A 82 SSASIRDANLYVSGLP 97 (167)
T ss_dssp CCGGGTTCEEEEESCC
T ss_pred CcccCCCCcEEECCCC
Confidence 543 2445555554
No 164
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.46 E-value=1.9e-13 Score=119.31 Aligned_cols=91 Identities=23% Similarity=0.261 Sum_probs=79.5
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVY 379 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~ 379 (402)
+++|||+|||.++++++|+++|++||.|..+.+..+..+ +++|||||+|.+.++|.+|++.+ +..++|++|+|.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 689999999999999999999999999999999888654 78999999999999999999977 9999999999999876
Q ss_pred eccc---ceEEEeeec
Q 015694 380 IISR---TFIEVQILV 392 (402)
Q Consensus 380 ~~~~---~~~~~~~~~ 392 (402)
.... ..|-+.+|+
T Consensus 83 ~~~~~~~~~l~v~nl~ 98 (168)
T 1b7f_A 83 GGESIKDTNLYVTNLP 98 (168)
T ss_dssp CSSTTTTCEEEEESCC
T ss_pred CcccCCCCCEEEeCCC
Confidence 5432 455556555
No 165
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.46 E-value=1e-13 Score=127.05 Aligned_cols=79 Identities=23% Similarity=0.286 Sum_probs=73.3
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeeee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVYI 380 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~~ 380 (402)
.++|||+||++++++++|+++|++||.|..+.|+.+.++ ++|||||+|.+.++|.+||+.+ +..|+||+|+|.++..+
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~-~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE-EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCC-CceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 468999999999999999999999999999999988654 7999999999999999999988 99999999999998765
Q ss_pred c
Q 015694 381 I 381 (402)
Q Consensus 381 ~ 381 (402)
.
T Consensus 182 ~ 182 (213)
T 4f02_A 182 K 182 (213)
T ss_dssp H
T ss_pred c
Confidence 4
No 166
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.6e-13 Score=109.47 Aligned_cols=76 Identities=20% Similarity=0.241 Sum_probs=66.3
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVY 379 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~ 379 (402)
..++|||+|||+++++++|+++|++||.|..+ +.++.+ ++ ||||+|.+.++|++||. + ++.|+|+.|+|.++..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~-g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDK-GV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSS-CC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCC-Cc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 35799999999999999999999999999986 555544 22 99999999999999999 7 9999999999987764
Q ss_pred ec
Q 015694 380 II 381 (402)
Q Consensus 380 ~~ 381 (402)
+.
T Consensus 82 ~~ 83 (94)
T 2e5g_A 82 KE 83 (94)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 167
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.46 E-value=2.3e-13 Score=121.90 Aligned_cols=82 Identities=16% Similarity=0.156 Sum_probs=73.1
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEeeee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGVYI 380 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~~~ 380 (402)
.++|||+|||.++++++|+++|++||.|..+.+..+..+ +++|||||+|.+.++|.+||..++..|+|+.|+|.++..+
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~k 183 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC--
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCCh
Confidence 589999999999999999999999999999999998755 7899999999999999999998899999999999999877
Q ss_pred ccc
Q 015694 381 ISR 383 (402)
Q Consensus 381 ~~~ 383 (402)
..+
T Consensus 184 ~~~ 186 (196)
T 1l3k_A 184 QEM 186 (196)
T ss_dssp ---
T ss_pred hHh
Confidence 654
No 168
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=110.15 Aligned_cols=77 Identities=14% Similarity=0.153 Sum_probs=68.3
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEE-EEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNG-VQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~-v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
..++|||+|||+++++++|+++|++||.|..++ ++.++.+ |.|||+|.+.++|++||..+ +..|+||+|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~---~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET---AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS---EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC---CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 468999999999999999999999999999984 6655443 34999999999999999987 999999999999987
Q ss_pred ee
Q 015694 379 YI 380 (402)
Q Consensus 379 ~~ 380 (402)
..
T Consensus 91 ~~ 92 (96)
T 2e44_A 91 DE 92 (96)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 169
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=8.1e-14 Score=115.37 Aligned_cols=76 Identities=18% Similarity=0.292 Sum_probs=66.0
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC----CcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEE
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK----QGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVL 376 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~----~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~ 376 (402)
..++|||+|||+++++++|+++|++||.|. +.++.+..+ +++|||||+|.+.++|++||+.+ ..++|+.+.+..
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~~ 84 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCVS 84 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEEC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEecc
Confidence 468999999999999999999999999999 766666543 67999999999999999999998 458999888765
Q ss_pred ee
Q 015694 377 GV 378 (402)
Q Consensus 377 ~~ 378 (402)
..
T Consensus 85 ~~ 86 (114)
T 2dnl_A 85 SP 86 (114)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 170
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.6e-13 Score=119.20 Aligned_cols=90 Identities=23% Similarity=0.264 Sum_probs=77.8
Q ss_pred cEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeeeec
Q 015694 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVYII 381 (402)
Q Consensus 303 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~~~ 381 (402)
++|||+|||.++++++|+++|++||.|.++.+..++.++++|||||+|.+.++|.+|++.+ +..++|+.|+|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 5899999999999999999999999999999998887789999999999999999999777 999999999999986554
Q ss_pred c-----cceEEEeeec
Q 015694 382 S-----RTFIEVQILV 392 (402)
Q Consensus 382 ~-----~~~~~~~~~~ 392 (402)
. ...|-+.+|+
T Consensus 81 ~~~~~~~~~l~v~nl~ 96 (166)
T 3md3_A 81 QSSSDDTFNLFVGDLN 96 (166)
T ss_dssp CCCCTTCEEEEEESCC
T ss_pred CCCCCCCceEEECCCC
Confidence 3 2344455554
No 171
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=4.5e-14 Score=111.18 Aligned_cols=78 Identities=21% Similarity=0.191 Sum_probs=66.5
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEeeee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGVYI 380 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~~~ 380 (402)
..++|||+|||.++++++|+++|++||.|..+.|..+ ++|||||+|.+.++|++++.. .+.++|++|+|.++..+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCC
Confidence 3689999999999999999999999999999887543 689999999999999865332 56779999999988776
Q ss_pred ccc
Q 015694 381 ISR 383 (402)
Q Consensus 381 ~~~ 383 (402)
..+
T Consensus 79 ~~~ 81 (88)
T 1wf0_A 79 HNS 81 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 172
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.45 E-value=7.5e-13 Score=118.70 Aligned_cols=84 Identities=12% Similarity=0.158 Sum_probs=76.9
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
...++|||+|||.++++++|+++|++||.|..+.+..+..+ +++|||||+|.+.++|.+|++.+ +..|+|++|+|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45789999999999999999999999999999999988744 78999999999999999999987 99999999999998
Q ss_pred eeeccc
Q 015694 378 VYIISR 383 (402)
Q Consensus 378 ~~~~~~ 383 (402)
.....+
T Consensus 192 ~~~~~~ 197 (198)
T 2yh0_A 192 SVGAKN 197 (198)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 776543
No 173
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.44 E-value=3.6e-13 Score=118.08 Aligned_cols=76 Identities=13% Similarity=0.206 Sum_probs=71.7
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
.++|||+|||.++++++|+++|++||.|..+.+..+..+ +++|||||+|.+.++|.+|++.+ +..|+|++|+|.++
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 689999999999999999999999999999999998644 88999999999999999999987 99999999999986
No 174
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.42 E-value=4.1e-13 Score=118.19 Aligned_cols=76 Identities=21% Similarity=0.208 Sum_probs=67.8
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCC--EEEEEEEee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLS--LIIKIVLGV 378 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~G--r~i~V~~~~ 378 (402)
..+|||+||++.+++++|+++|++||.|.++.|..++ .+|||||+|.+.++|.+|++.+ |..|.| ++|+|.++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 4679999999999999999999999999999885432 5789999999999999999999 999955 999999987
Q ss_pred ee
Q 015694 379 YI 380 (402)
Q Consensus 379 ~~ 380 (402)
..
T Consensus 123 ~~ 124 (164)
T 1sjr_A 123 LT 124 (164)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 175
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.42 E-value=2.8e-13 Score=105.93 Aligned_cols=69 Identities=22% Similarity=0.392 Sum_probs=62.7
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcC----C-------CeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccC
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIF----G-------PIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISL 368 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~f----G-------~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~ 368 (402)
..++|||+|||.++++++|+++|++| | .|.++.+.. .+|||||+|.+.++|.+|+ .+ +..|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~-----~kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS-----SSSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC-----CCcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 46899999999999999999999999 8 898887743 3799999999999999999 66 99999
Q ss_pred CEEEEEE
Q 015694 369 SLIIKIV 375 (402)
Q Consensus 369 Gr~i~V~ 375 (402)
||+|+|.
T Consensus 79 g~~l~V~ 85 (87)
T 2hzc_A 79 GQSLKIR 85 (87)
T ss_dssp TEECEEE
T ss_pred CeEEEEe
Confidence 9999986
No 176
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.42 E-value=6e-13 Score=112.85 Aligned_cols=74 Identities=23% Similarity=0.249 Sum_probs=66.0
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccE-EEEEeCCHHHHHHHHHhC-CCccCC--EEEEEEEe
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCF-GFVAFETPGSVQSALEVL-SLISLS--LIIKIVLG 377 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gf-gFVeF~~~~~a~~Al~~~-~~~i~G--r~i~V~~~ 377 (402)
--+|||+||++.+|+++|+++|++||.|.++.+..+ .+|| |||+|.+.++|++|++.+ |..|.| ++|+|.++
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 357899999999999999999999999999987643 3577 999999999999999999 999988 88998887
Q ss_pred ee
Q 015694 378 VY 379 (402)
Q Consensus 378 ~~ 379 (402)
..
T Consensus 104 k~ 105 (130)
T 3zzy_A 104 KL 105 (130)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 177
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.42 E-value=1.5e-13 Score=119.88 Aligned_cols=79 Identities=20% Similarity=0.260 Sum_probs=72.5
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEeeee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGVYI 380 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~~~ 380 (402)
.++|||+|||.++++++|+++|++||.|..+.+..+..+ +++|||||+|.+.++|.+|++..+..|+|++|+|.++.++
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCCC
Confidence 568999999999999999999999999999999888654 7899999999999999999994499999999999998654
No 178
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.41 E-value=4.4e-13 Score=121.89 Aligned_cols=82 Identities=18% Similarity=0.257 Sum_probs=75.8
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVY 379 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~ 379 (402)
.++|||+|||.++++++|+++|++||.|..+.+..+..+ +++|||||+|.+.++|.+|++.+ +..|+|++|+|.++..
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVT 204 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecC
Confidence 579999999999999999999999999999999988655 78999999999999999999987 9999999999999887
Q ss_pred eccc
Q 015694 380 IISR 383 (402)
Q Consensus 380 ~~~~ 383 (402)
....
T Consensus 205 ~~~~ 208 (216)
T 2qfj_A 205 PPMP 208 (216)
T ss_dssp CSST
T ss_pred CCCC
Confidence 6543
No 179
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.41 E-value=6.2e-13 Score=135.11 Aligned_cols=82 Identities=16% Similarity=0.255 Sum_probs=75.6
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
..++|||+|||+++|+++|+.+|++||.|..|.|+.+..+ +++|||||+|.+.++|.+||..+ +..|+|+.|+|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 4689999999999999999999999999999999988655 78999999999999999999998 999999999999987
Q ss_pred eecc
Q 015694 379 YIIS 382 (402)
Q Consensus 379 ~~~~ 382 (402)
....
T Consensus 181 ~~~~ 184 (437)
T 3pgw_S 181 GRTV 184 (437)
T ss_pred CCCC
Confidence 6543
No 180
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.41 E-value=2.6e-13 Score=118.43 Aligned_cols=91 Identities=23% Similarity=0.350 Sum_probs=78.0
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEeee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGVY 379 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~~ 379 (402)
++++|||+|||.++++++|+++|++||.|..+.++.++.+ +++|||||+|.+.++|.+||+. +..++|+.|.|.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 4689999999999999999999999999999999888655 8899999999999999999995 6899999999988765
Q ss_pred eccc---ceEEEeeec
Q 015694 380 IISR---TFIEVQILV 392 (402)
Q Consensus 380 ~~~~---~~~~~~~~~ 392 (402)
.... ..|-+.+|+
T Consensus 81 ~~~~~~~~~l~V~nlp 96 (167)
T 2cjk_A 81 RDEQDKTGKIFVGGIG 96 (167)
T ss_dssp HHHHHHCEEEEEEEEC
T ss_pred hhhccCCCeEEECCCC
Confidence 4432 345555555
No 181
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.41 E-value=3.9e-13 Score=122.99 Aligned_cols=75 Identities=13% Similarity=0.153 Sum_probs=68.9
Q ss_pred CCCcEEEEccCC-CCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 300 AEGCSIYVRNLA-FTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 300 ~~~~~lfVgnLp-~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
.++++|||+||+ +++++++|+++|++||.|.+++|+.+ .+|||||+|.+.++|++||+.+ |..|.||+|+|.++
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 357899999999 89999999999999999999988643 4799999999999999999988 99999999999987
Q ss_pred e
Q 015694 378 V 378 (402)
Q Consensus 378 ~ 378 (402)
.
T Consensus 78 ~ 78 (205)
T 3tyt_A 78 K 78 (205)
T ss_dssp S
T ss_pred c
Confidence 4
No 182
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=3.3e-13 Score=111.96 Aligned_cols=77 Identities=12% Similarity=0.074 Sum_probs=66.5
Q ss_pred CCcEEEE--ccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCcc-----CCEEE
Q 015694 301 EGCSIYV--RNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLIS-----LSLII 372 (402)
Q Consensus 301 ~~~~lfV--gnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i-----~Gr~i 372 (402)
..++||| |||++++++++|+++|++||.|..+.|.. .+|||||+|.+.++|++|++.| |..| +|+.|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 3678999 77999999999999999999999876631 4799999999999999999999 8887 68889
Q ss_pred EEEEeeeecc
Q 015694 373 KIVLGVYIIS 382 (402)
Q Consensus 373 ~V~~~~~~~~ 382 (402)
.|.++-...+
T Consensus 99 ~v~~a~~~p~ 108 (114)
T 2cq2_A 99 YLNFVEKVQW 108 (114)
T ss_dssp EEEEESCCCC
T ss_pred EEEecccCcc
Confidence 8888765543
No 183
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.40 E-value=4.4e-13 Score=112.42 Aligned_cols=80 Identities=24% Similarity=0.232 Sum_probs=68.8
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
..+++|||+|| ++++++|+++|++||.|..+.+. +++|||||+|.+.++|.+||+.+ +..|+|+.|+|.++.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 34789999996 69999999999999999998874 46899999999999999999887 999999999999998
Q ss_pred eecccceE
Q 015694 379 YIISRTFI 386 (402)
Q Consensus 379 ~~~~~~~~ 386 (402)
....+..+
T Consensus 110 ~~~~~~~~ 117 (121)
T 2bz2_A 110 KQPMLDAA 117 (121)
T ss_dssp SSCC----
T ss_pred CCCCCCCC
Confidence 77655433
No 184
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.40 E-value=2e-13 Score=113.27 Aligned_cols=73 Identities=16% Similarity=0.115 Sum_probs=63.5
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEE-----EEE
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLI-----IKI 374 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~-----i~V 374 (402)
..++|||+|||+++++++|+++|++||.|..+.|..+ |||||+|.+.++|++||+.+ +..|+|++ |+|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 3689999999999999999999999999999888543 89999999999999999988 99999998 666
Q ss_pred EEeee
Q 015694 375 VLGVY 379 (402)
Q Consensus 375 ~~~~~ 379 (402)
...-.
T Consensus 89 ~~~~~ 93 (115)
T 3beg_B 89 KVDGP 93 (115)
T ss_dssp EECC-
T ss_pred ccCCC
Confidence 65544
No 185
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.39 E-value=7.1e-13 Score=116.24 Aligned_cols=77 Identities=17% Similarity=0.300 Sum_probs=70.0
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccC---CEEEEEEE
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISL---SLIIKIVL 376 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~---Gr~i~V~~ 376 (402)
..++|||+|||.++++++|+++|++||.|..+.+..+.+++++|||||+|.+.++|.+|++.+ +..+. ||+|+|.+
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 357899999999999999999999999999999999877788999999999999999999988 76665 49999987
Q ss_pred e
Q 015694 377 G 377 (402)
Q Consensus 377 ~ 377 (402)
+
T Consensus 174 a 174 (175)
T 3nmr_A 174 A 174 (175)
T ss_dssp C
T ss_pred c
Confidence 5
No 186
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.38 E-value=1.7e-12 Score=113.18 Aligned_cols=77 Identities=22% Similarity=0.359 Sum_probs=70.9
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCC--EEEEEEE
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLS--LIIKIVL 376 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~G--r~i~V~~ 376 (402)
..++|||+|||.++++++|+++|++||.|..+.+..+..+ +++|||||+|.+.++|.+|++.+ +..|+| ++|+|.+
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence 3579999999999999999999999999999999988744 78999999999999999999988 999977 9999987
Q ss_pred e
Q 015694 377 G 377 (402)
Q Consensus 377 ~ 377 (402)
+
T Consensus 168 A 168 (168)
T 1b7f_A 168 A 168 (168)
T ss_dssp C
T ss_pred C
Confidence 5
No 187
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.38 E-value=2.1e-12 Score=108.77 Aligned_cols=73 Identities=18% Similarity=0.129 Sum_probs=64.2
Q ss_pred cEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccE-EEEEeCCHHHHHHHHHhC-CCccCC--EEEEEEEee
Q 015694 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCF-GFVAFETPGSVQSALEVL-SLISLS--LIIKIVLGV 378 (402)
Q Consensus 303 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gf-gFVeF~~~~~a~~Al~~~-~~~i~G--r~i~V~~~~ 378 (402)
..|||+||++.+++++|+++|++||.|.++.|..+ .|| |||+|.+.++|.+|++.| |..|.| +.|+|.++.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 45789999999999999999999999999988542 286 999999999999999998 999987 689998875
Q ss_pred ee
Q 015694 379 YI 380 (402)
Q Consensus 379 ~~ 380 (402)
..
T Consensus 101 ~~ 102 (124)
T 2e5i_A 101 PT 102 (124)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 188
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.37 E-value=1.7e-12 Score=113.81 Aligned_cols=92 Identities=17% Similarity=0.207 Sum_probs=75.2
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC---CcccEEEEEeCCHHHHHHHHHhC-CCccC---CEEEE
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK---QGYCFGFVAFETPGSVQSALEVL-SLISL---SLIIK 373 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~---~~~gfgFVeF~~~~~a~~Al~~~-~~~i~---Gr~i~ 373 (402)
+.++|||+|||+++++++|+++|++||.|..+.++.+..+ +++|||||+|.+.++|++|++.+ +..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4689999999999999999999999999999999998877 68999999999999999999987 65554 56666
Q ss_pred EEEeeeecc----cceEEEeeec
Q 015694 374 IVLGVYIIS----RTFIEVQILV 392 (402)
Q Consensus 374 V~~~~~~~~----~~~~~~~~~~ 392 (402)
+..+..... ...|-|.+|+
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~ 104 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMIS 104 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCC
T ss_pred EccccccccccCCCCeEEEcCCC
Confidence 666544332 2445555555
No 189
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.36 E-value=8.4e-13 Score=120.02 Aligned_cols=81 Identities=28% Similarity=0.353 Sum_probs=72.2
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
+.++|||+|||.++++++|+++|++||.|..+.++.+..+ +++|||||+|.+.++|.+||+.+ +..|+|+.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 4689999999999999999999999999999999888755 78999999999999999999977 999999999998776
Q ss_pred eec
Q 015694 379 YII 381 (402)
Q Consensus 379 ~~~ 381 (402)
...
T Consensus 107 ~~~ 109 (216)
T 2qfj_A 107 NIG 109 (216)
T ss_dssp CCG
T ss_pred Ccc
Confidence 554
No 190
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=9.4e-13 Score=104.73 Aligned_cols=71 Identities=15% Similarity=0.117 Sum_probs=62.6
Q ss_pred CcE-EEEccCCCCCCHHH----HHHHhhcC-CCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEE
Q 015694 302 GCS-IYVRNLAFTTTSTE----LEEAFKIF-GPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKI 374 (402)
Q Consensus 302 ~~~-lfVgnLp~~vte~~----L~~~F~~f-G~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V 374 (402)
..+ |||+|||+++++++ |+++|++| |.|.++ + .|||||.|.+.++|++|++.| |..|.||+|+|
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------t--gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------T--GCSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------C--TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------e--cCEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 455 99999999999988 55899999 599876 1 399999999999999999998 99999999999
Q ss_pred EEeeeec
Q 015694 375 VLGVYII 381 (402)
Q Consensus 375 ~~~~~~~ 381 (402)
.++....
T Consensus 79 ~~A~~~s 85 (96)
T 2diu_A 79 SFTPKNR 85 (96)
T ss_dssp ESSCCSC
T ss_pred EecCCCc
Confidence 9987654
No 191
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.36 E-value=9.6e-12 Score=118.22 Aligned_cols=77 Identities=19% Similarity=0.216 Sum_probs=69.9
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccC-CEEEEEE
Q 015694 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISL-SLIIKIV 375 (402)
Q Consensus 298 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~-Gr~i~V~ 375 (402)
....+++|||+|||.++++++|+++|++||.|.++.+..++ +|||||+|.+.++|.+||+.+ +..|+ |++|+|.
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 34567899999999999999999999999999999887443 589999999999999999999 99999 9999999
Q ss_pred Eee
Q 015694 376 LGV 378 (402)
Q Consensus 376 ~~~ 378 (402)
++.
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 974
No 192
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.36 E-value=3.5e-12 Score=104.29 Aligned_cols=78 Identities=17% Similarity=0.093 Sum_probs=68.7
Q ss_pred CCcEEEEccCCC-----CCCHHHHHHHhhcCCCeeEEEEEEcCCC--CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEE
Q 015694 301 EGCSIYVRNLAF-----TTTSTELEEAFKIFGPIKKNGVQVRSNK--QGYCFGFVAFETPGSVQSALEVL-SLISLSLII 372 (402)
Q Consensus 301 ~~~~lfVgnLp~-----~vte~~L~~~F~~fG~I~~~~v~~~~~~--~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i 372 (402)
.++.|+|+||.. +-++++|+++|++||.|.++.|..++++ +++|||||+|.+.++|.+|++.| |..|+||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 468999999963 2378999999999999999999887653 68999999999999999999998 999999999
Q ss_pred EEEEee
Q 015694 373 KIVLGV 378 (402)
Q Consensus 373 ~V~~~~ 378 (402)
+|.++-
T Consensus 87 ~v~~a~ 92 (105)
T 2pe8_A 87 KACFYN 92 (105)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999874
No 193
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.35 E-value=2.6e-12 Score=111.57 Aligned_cols=76 Identities=24% Similarity=0.354 Sum_probs=69.0
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEE--EEEEEe
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLI--IKIVLG 377 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~--i~V~~~ 377 (402)
.++|||+|||.++++++|+++|++||.|..+.+..+..+ +++|||||+|.+.++|.+|++.+ +..|+|+. |+|.+|
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 578999999999999999999999999999999888754 78999999999999999999988 99999975 666654
No 194
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.34 E-value=3.7e-12 Score=121.09 Aligned_cols=80 Identities=23% Similarity=0.219 Sum_probs=71.4
Q ss_pred CCCcEEEEccCCCCCCHHHHH----HHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEE
Q 015694 300 AEGCSIYVRNLAFTTTSTELE----EAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKI 374 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~----~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V 374 (402)
...++|||+|||.++++++|+ ++|++||.|..+.+.. .++++|||||+|.+.++|.+||+.+ +..|+|+.|+|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 447899999999999999977 8999999999987754 4468999999999999999999888 99999999999
Q ss_pred EEeeeec
Q 015694 375 VLGVYII 381 (402)
Q Consensus 375 ~~~~~~~ 381 (402)
.++....
T Consensus 85 ~~a~~~~ 91 (282)
T 3pgw_A 85 QYAKTDS 91 (282)
T ss_pred EEeccCc
Confidence 9986544
No 195
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.33 E-value=2.3e-12 Score=113.47 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=68.2
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeee
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVY 379 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~ 379 (402)
..++|||+|||.++++++|+++|++||.|..+ +..++++|||||+|.+.++|.+|++.+ +..|+||+|+|.++..
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 46899999999999999999999999988764 444578999999999999999999987 9999999999999865
Q ss_pred e
Q 015694 380 I 380 (402)
Q Consensus 380 ~ 380 (402)
+
T Consensus 174 k 174 (175)
T 1fje_B 174 K 174 (175)
T ss_dssp C
T ss_pred C
Confidence 4
No 196
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.31 E-value=4.7e-12 Score=120.48 Aligned_cols=83 Identities=12% Similarity=0.010 Sum_probs=76.8
Q ss_pred CCcEEEEccCCCCC-CHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 301 EGCSIYVRNLAFTT-TSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 301 ~~~~lfVgnLp~~v-te~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
..++|||+|||.++ ++++|+++|+.||.|..+.|..+..++++|||||+|.+.++|.+|+..+ |..|+|++|+|.++.
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 262 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCA 262 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEec
Confidence 46899999999995 9999999999999999999999887788999999999999999999988 999999999999997
Q ss_pred eeccc
Q 015694 379 YIISR 383 (402)
Q Consensus 379 ~~~~~ 383 (402)
....+
T Consensus 263 ~~~~~ 267 (284)
T 3smz_A 263 PGPPG 267 (284)
T ss_dssp SSSCH
T ss_pred CCCcc
Confidence 76654
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.29 E-value=9.8e-12 Score=118.74 Aligned_cols=90 Identities=17% Similarity=0.149 Sum_probs=74.4
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEe
Q 015694 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLG 377 (402)
Q Consensus 298 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~ 377 (402)
.....++|||+|||.++++++|+++|+.||.|..+.|..+..+ ++|||||+|.+.++|.+||+..+..|+|+.|+|.++
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL 115 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEEC
Confidence 3456799999999999999999999999999999999888766 579999999999999999964499999999999875
Q ss_pred eeecccceEEEeeec
Q 015694 378 VYIISRTFIEVQILV 392 (402)
Q Consensus 378 ~~~~~~~~~~~~~~~ 392 (402)
....|-|.+|+
T Consensus 116 ----~~~~l~v~nlp 126 (292)
T 2ghp_A 116 ----TECTLWMTNFP 126 (292)
T ss_dssp ----CSCEEEEECCC
T ss_pred ----CCCEEEEECCC
Confidence 33445555665
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.29 E-value=4.4e-12 Score=121.21 Aligned_cols=80 Identities=28% Similarity=0.375 Sum_probs=73.4
Q ss_pred CCCcEEEEccCCCC-CCHHHHHHHhhcCCCeeEEEEEEcCC--CCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEE
Q 015694 300 AEGCSIYVRNLAFT-TTSTELEEAFKIFGPIKKNGVQVRSN--KQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIV 375 (402)
Q Consensus 300 ~~~~~lfVgnLp~~-vte~~L~~~F~~fG~I~~~~v~~~~~--~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~ 375 (402)
..+++|||+|||.+ +++++|+++|++||.|..+.|..+.. ++++|||||+|.+.++|.+|+ .+ +..|+|++|+|.
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVS 286 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEE
Confidence 34689999999999 99999999999999999999988877 578999999999999999999 77 999999999999
Q ss_pred Eeeee
Q 015694 376 LGVYI 380 (402)
Q Consensus 376 ~~~~~ 380 (402)
++..+
T Consensus 287 ~a~~k 291 (292)
T 2ghp_A 287 LADKK 291 (292)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 98764
No 199
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.28 E-value=1.4e-12 Score=114.89 Aligned_cols=94 Identities=20% Similarity=0.182 Sum_probs=74.9
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEEee
Q 015694 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVLGV 378 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~~~ 378 (402)
..+.++|||+|||.++++++|+++|+.||.+..+.+.....++++|||||+|.+.++|.+||+..+..|+|+.|+|.++.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCC
Confidence 34578999999999999999999999999876522222223378999999999999999999644999999999999987
Q ss_pred eeccc-----ceEEEeeec
Q 015694 379 YIISR-----TFIEVQILV 392 (402)
Q Consensus 379 ~~~~~-----~~~~~~~~~ 392 (402)
....+ ..|-+.+|+
T Consensus 90 ~~~~~~~~~~~~l~v~nlp 108 (175)
T 1fje_B 90 GRDSKKVRAARTLLAKNLS 108 (175)
T ss_dssp CSSCSTTGGGGEEEEESCC
T ss_pred CccccccccCCEEEEeCCC
Confidence 65432 556666665
No 200
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.28 E-value=1.6e-11 Score=116.82 Aligned_cols=92 Identities=17% Similarity=0.123 Sum_probs=80.6
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC-CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEeee
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGVY 379 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~~ 379 (402)
.++|||+|||.++++++|+++|++||.|..+.+..+..+ +++|||||+|.+.++|.+|+..+ +..|+|+.|+|.++..
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~ 174 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA 174 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCG
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 479999999999999999999999999999999888755 78999999999999999999877 9999999999999987
Q ss_pred ecc------cceEEEeeecc
Q 015694 380 IIS------RTFIEVQILVE 393 (402)
Q Consensus 380 ~~~------~~~~~~~~~~~ 393 (402)
... ...|-+.+|+.
T Consensus 175 ~~~~~~~~~~~~l~v~nlp~ 194 (284)
T 3smz_A 175 GQLTPALLHSRCLCVDRLPP 194 (284)
T ss_dssp GGCCTTTTSCSEEEEECCCT
T ss_pred CCCCcccCCccEEEEecCCc
Confidence 653 23455666653
No 201
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.28 E-value=3.8e-12 Score=117.84 Aligned_cols=77 Identities=19% Similarity=0.173 Sum_probs=70.1
Q ss_pred CCCcEEEEccCCC-CCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 300 AEGCSIYVRNLAF-TTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 300 ~~~~~lfVgnLp~-~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
.++++|||+|||. ++++++|+++|++||.|..+.+..++ +|||||+|.+.++|++||+.+ +..|+|+.|+|.++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 3478999999999 99999999999999999999887653 789999999999999999977 99999999999998
Q ss_pred eee
Q 015694 378 VYI 380 (402)
Q Consensus 378 ~~~ 380 (402)
...
T Consensus 108 ~~~ 110 (229)
T 2adc_A 108 KHQ 110 (229)
T ss_dssp SCC
T ss_pred cCc
Confidence 754
No 202
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=2.4e-11 Score=100.09 Aligned_cols=78 Identities=14% Similarity=0.093 Sum_probs=66.6
Q ss_pred CCCcEEEEccCCCCCC-----------HHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCcc
Q 015694 300 AEGCSIYVRNLAFTTT-----------STELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLIS 367 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vt-----------e~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i 367 (402)
..++.|+|+||..... +++|+++|++||.|..+.| .++. .+|||||+|.+.++|.+|+..+ +..|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~--~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH--PDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC--TTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC--CCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4578999999944432 5799999999999999955 5543 6899999999999999999999 9999
Q ss_pred CCEEEEEEEeeee
Q 015694 368 LSLIIKIVLGVYI 380 (402)
Q Consensus 368 ~Gr~i~V~~~~~~ 380 (402)
+||+|+|.++...
T Consensus 90 ~gr~l~v~~a~~~ 102 (112)
T 2dit_A 90 GGRQITAQAWDGT 102 (112)
T ss_dssp TTEECEEEECCSC
T ss_pred CCcEEEEEEeCCC
Confidence 9999999998654
No 203
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.26 E-value=6e-12 Score=117.58 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=68.7
Q ss_pred CCCCcEEEEccCCCCC---------CHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCcc-
Q 015694 299 EAEGCSIYVRNLAFTT---------TSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLIS- 367 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~v---------te~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i- 367 (402)
....++||||||+..+ ++++|+++|++||.|.++.|+. ++|||||+|.+.++|+.|++.| +..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 3457899999999998 7999999999999999998863 5899999999999999999999 8888
Q ss_pred -----------CCEEEEEEEeeeecc
Q 015694 368 -----------LSLIIKIVLGVYIIS 382 (402)
Q Consensus 368 -----------~Gr~i~V~~~~~~~~ 382 (402)
+|+.|.|.+|.....
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccccCCCCEEEEEEccCCCC
Confidence 899999999976543
No 204
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.25 E-value=3.5e-12 Score=114.76 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=68.9
Q ss_pred CCcEEEEccCCC-CCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 301 EGCSIYVRNLAF-TTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 301 ~~~~lfVgnLp~-~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
.+++|||+|||. ++++++|+++|++||.|..+.+..++ +|||||+|.+.++|.+|++.+ +..|+|+.|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 368999999999 99999999999999999998876543 789999999999999999977 999999999999987
Q ss_pred ee
Q 015694 379 YI 380 (402)
Q Consensus 379 ~~ 380 (402)
..
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 205
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.23 E-value=2.7e-11 Score=114.38 Aligned_cols=85 Identities=21% Similarity=0.315 Sum_probs=73.8
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEee
Q 015694 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLGV 378 (402)
Q Consensus 300 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~~ 378 (402)
...++|||+|||.++|+++|+++|++||.|..+.+.. .+|||||+|.+.++|.+|+..+ +..|+|+.|+|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 4468999999999999999999999999999988742 4799999999999999999977 999999999999885
Q ss_pred eecccceEEEeeec
Q 015694 379 YIISRTFIEVQILV 392 (402)
Q Consensus 379 ~~~~~~~~~~~~~~ 392 (402)
. ...|-|.+|+
T Consensus 95 ~---~~~l~v~nl~ 105 (261)
T 3sde_A 95 H---GAALTVKNLS 105 (261)
T ss_dssp C---SSEEEEESCC
T ss_pred c---CCcccccCCC
Confidence 4 3445666665
No 206
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.22 E-value=3.6e-12 Score=103.98 Aligned_cols=71 Identities=15% Similarity=0.145 Sum_probs=62.4
Q ss_pred EccCCCCCCHHHHHHHh------------hcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEE
Q 015694 307 VRNLAFTTTSTELEEAF------------KIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIK 373 (402)
Q Consensus 307 VgnLp~~vte~~L~~~F------------~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~ 373 (402)
+.||++++++++|++.| ++||.|.++.|..+..++++|||||+|.+.++|++|++.+ |..++||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56777888888777666 9999999999988776688999999999999999999988 9999999999
Q ss_pred EEEe
Q 015694 374 IVLG 377 (402)
Q Consensus 374 V~~~ 377 (402)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9875
No 207
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.20 E-value=3.6e-11 Score=113.54 Aligned_cols=81 Identities=27% Similarity=0.333 Sum_probs=73.0
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC--CCccC---CEEEEEEE
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL--SLISL---SLIIKIVL 376 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~--~~~i~---Gr~i~V~~ 376 (402)
+++|||+|||.++++++|+++|++||.|..+.|..+..++++|||||+|.+.++|.+||..+ +..+. ||+|.|.+
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~ 175 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEP 175 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEee
Confidence 57999999999999999999999999999999999976688999999999999999999998 44444 99999999
Q ss_pred eeeecc
Q 015694 377 GVYIIS 382 (402)
Q Consensus 377 ~~~~~~ 382 (402)
+.....
T Consensus 176 ~~~~~~ 181 (261)
T 3sde_A 176 MEQFDD 181 (261)
T ss_dssp CCCEES
T ss_pred ccccCc
Confidence 877653
No 208
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.20 E-value=1.5e-11 Score=112.36 Aligned_cols=69 Identities=12% Similarity=0.078 Sum_probs=61.7
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCe--eEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCE
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPI--KKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSL 370 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I--~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr 370 (402)
++++|||+|||+++++++|+++|++||.| ..+++..++ ++.+|||||+|.+.++|.+||..+ +..|+|+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 36799999999999999999999999999 787776554 345699999999999999999999 9999887
No 209
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.19 E-value=3.8e-11 Score=107.46 Aligned_cols=74 Identities=22% Similarity=0.333 Sum_probs=63.4
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcC----C-------CeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccC
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIF----G-------PIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISL 368 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~f----G-------~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~ 368 (402)
..++|||+|||+++++++|+++|++| | .|..+.+ ++++|||||+|.+.++|++|| .+ +..|+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-----~~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-----NQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-----ETTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-----cCCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 36899999999999999999999999 5 5555444 246899999999999999999 55 99999
Q ss_pred CEEEEEEEeeee
Q 015694 369 SLIIKIVLGVYI 380 (402)
Q Consensus 369 Gr~i~V~~~~~~ 380 (402)
|++|+|.++...
T Consensus 77 g~~i~v~~~~~~ 88 (198)
T 2yh0_A 77 GQSLKIRRPHDY 88 (198)
T ss_dssp TEEEEEECCCCC
T ss_pred CceEEEeCCCCC
Confidence 999999987654
No 210
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.18 E-value=4.5e-11 Score=104.54 Aligned_cols=86 Identities=20% Similarity=0.268 Sum_probs=70.6
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcC----C-------CeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccC
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIF----G-------PIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISL 368 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~f----G-------~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~ 368 (402)
+.++|||+|||.++++++|+++|++| | .|..+.+. +++|||||+|.+.++|.+|+ .+ +..|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-----~~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-----TTTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-----CCCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 46899999999999999999999999 6 66665543 35899999999999999999 55 99999
Q ss_pred CEEEEEEEeeeecc---cceEEEeeec
Q 015694 369 SLIIKIVLGVYIIS---RTFIEVQILV 392 (402)
Q Consensus 369 Gr~i~V~~~~~~~~---~~~~~~~~~~ 392 (402)
|+.|+|.++..... ...|-+.+|+
T Consensus 77 g~~i~v~~~~~~~~~~~~~~l~v~nlp 103 (172)
T 2g4b_A 77 GQSLKIRRPHDYQPLPGAHKLFIGGLP 103 (172)
T ss_dssp TEECEEECCSSCCCCTTTTCEEEECCC
T ss_pred CceeeecCCcccCCCCCCCEEEEEcCC
Confidence 99999998765533 2455566665
No 211
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.18 E-value=5.1e-11 Score=97.34 Aligned_cols=78 Identities=13% Similarity=0.088 Sum_probs=66.9
Q ss_pred CCcEEEEccC--CCCCC--------HHHHHHHhhcCCCeeEEEEEEcCCC---CcccEEEEEeCCHHHHHHHHHhC-CCc
Q 015694 301 EGCSIYVRNL--AFTTT--------STELEEAFKIFGPIKKNGVQVRSNK---QGYCFGFVAFETPGSVQSALEVL-SLI 366 (402)
Q Consensus 301 ~~~~lfVgnL--p~~vt--------e~~L~~~F~~fG~I~~~~v~~~~~~---~~~gfgFVeF~~~~~a~~Al~~~-~~~ 366 (402)
+++.|.++|+ +.+.. +++|++.|++||.|.++.|..+..+ +++|||||+|.+.++|.+|++.| |..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4678999998 33333 3689999999999999999877654 57899999999999999999999 999
Q ss_pred cCCEEEEEEEee
Q 015694 367 SLSLIIKIVLGV 378 (402)
Q Consensus 367 i~Gr~i~V~~~~ 378 (402)
++||.|+|.+.-
T Consensus 84 f~GR~i~v~~~~ 95 (105)
T 3v4m_A 84 FANRVVVTKYCD 95 (105)
T ss_dssp ETTEECEEEEEC
T ss_pred eCCCEEEEEEeC
Confidence 999999998863
No 212
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.17 E-value=6.5e-11 Score=109.53 Aligned_cols=75 Identities=11% Similarity=0.090 Sum_probs=67.9
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCC-CeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccC-CEEEEEEEe
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFG-PIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISL-SLIIKIVLG 377 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG-~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~-Gr~i~V~~~ 377 (402)
.+++|||+|||.++++++|+++|++|| .|..+.++.+ .+|||||+|.+.++|.+|++.+ +..|+ |++|+|.++
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 468999999999999999999999999 9999887432 4789999999999999999988 99999 999999987
Q ss_pred ee
Q 015694 378 VY 379 (402)
Q Consensus 378 ~~ 379 (402)
..
T Consensus 226 ~~ 227 (229)
T 2adc_A 226 KS 227 (229)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 213
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.16 E-value=2.7e-11 Score=108.94 Aligned_cols=75 Identities=11% Similarity=0.090 Sum_probs=67.8
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCC-CeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccC-CEEEEEEEe
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFG-PIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISL-SLIIKIVLG 377 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG-~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~-Gr~i~V~~~ 377 (402)
.+++|||+|||.++++++|+++|++|| .|..+.++.+ .+|||||+|.+.++|.+|+..+ +..|+ |++|+|.++
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 194 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEee
Confidence 468999999999999999999999999 9999877433 3789999999999999999988 99999 999999987
Q ss_pred ee
Q 015694 378 VY 379 (402)
Q Consensus 378 ~~ 379 (402)
..
T Consensus 195 ~~ 196 (198)
T 1qm9_A 195 KS 196 (198)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 214
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.5e-10 Score=92.43 Aligned_cols=76 Identities=11% Similarity=-0.046 Sum_probs=62.9
Q ss_pred CcEEEEccCC-------CCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEE
Q 015694 302 GCSIYVRNLA-------FTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLSLIIKI 374 (402)
Q Consensus 302 ~~~lfVgnLp-------~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V 374 (402)
.++|-|.... .++++++|+++|++||.|..+.|. ++++|||||+|.+.++|.+||+.+ ..+.|++|+|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~-~~~~g~~l~V 84 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNE-VGLVDNPLKI 84 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTC-CBCSSSBCEE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhc-CCCCCCeEEE
Confidence 4566665543 458999999999999999999886 357899999999999999999984 5578999999
Q ss_pred EEeeeecc
Q 015694 375 VLGVYIIS 382 (402)
Q Consensus 375 ~~~~~~~~ 382 (402)
.++....+
T Consensus 85 ~~a~~~~~ 92 (100)
T 2d9o_A 85 SWLEGQPQ 92 (100)
T ss_dssp ECSSCCCC
T ss_pred EEccCCCC
Confidence 99876654
No 215
>1of5_B MTR2, YKL186C, mRNA transport regulator MTR2; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=99.11 E-value=3e-10 Score=98.84 Aligned_cols=101 Identities=10% Similarity=0.056 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHHHHccCc-----ccccccccCCCeeeccCCCCccceeccHHHHHHHHh-cCCCCcceEEEeeeEee
Q 015694 11 SAQVVGNAFVEQYYHILHQSP-----GLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRIL-SLNYEDYTAEIKTADAQ 84 (402)
Q Consensus 11 ~~~~vg~~FV~~YY~~l~~~p-----~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~-sl~~~~~~~~I~~~d~q 84 (402)
.-.+.+..||++||..|+..+ ..|..|+...+.++++|. .+-+..+..+.|. .++ ..+|+|+++|||
T Consensus 14 ~~~~aae~FVk~~y~aLd~~r~~~l~~~lssF~p~~~~Ii~NG~-----p~a~p~~fqeiw~~Q~p--~T~hel~S~D~H 86 (184)
T 1of5_B 14 NQAQITATFTKKILAHLDDPDSNKLAQFVQLFNPNNCRIIFNAT-----PFAQATVFLQMWQNQVV--QTQHALTGVDYH 86 (184)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCCC-CHHHHTTBCSS-CCEEETTE-----EESCHHHHHHHHHHHSC--CCEEEEEEEEEE
T ss_pred cchhHHHHHHHHHHHHhcccccchhhhhhhhcCCCCceEEECCe-----EcCCHHHHHHHHHhcCC--CceEEEEeEEEE
Confidence 345789999999999999888 788999887789999997 5656667777777 777 448999999999
Q ss_pred eeCC-CcEEEEEEEEEEeCCCcccceeEEEEeeEc
Q 015694 85 DSYE-KGVIVLVTGCLTGKDNVKKKFTQTFFLAPQ 118 (402)
Q Consensus 85 ~s~~-~~vlv~V~G~l~~~~~~~r~F~qtF~L~~~ 118 (402)
-+.+ |+|+|+|+|.|..++..+-+|.|+|+|.|.
T Consensus 87 VIngsgsivv~VsgkVRFdEsgrd~fgEtfvLvpn 121 (184)
T 1of5_B 87 AIPGSGTLICNVNCKVRFDESGRDKMGQDATVPIQ 121 (184)
T ss_dssp EETTTTEEEEEEEEEEECC----------------
T ss_pred EECCCCeEEEEEEEEEEECCCCCCCCCCeEEECCC
Confidence 9854 679999999999976555699999999986
No 216
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.10 E-value=2.1e-10 Score=95.70 Aligned_cols=77 Identities=16% Similarity=0.145 Sum_probs=66.7
Q ss_pred CCcEEEEccCCC--C---CCHHHHHHHhhcCCCeeEEEEEEcCCC-----CcccEEEEEeCCHHHHHHHHHhC-CCccCC
Q 015694 301 EGCSIYVRNLAF--T---TTSTELEEAFKIFGPIKKNGVQVRSNK-----QGYCFGFVAFETPGSVQSALEVL-SLISLS 369 (402)
Q Consensus 301 ~~~~lfVgnLp~--~---vte~~L~~~F~~fG~I~~~~v~~~~~~-----~~~gfgFVeF~~~~~a~~Al~~~-~~~i~G 369 (402)
+++.|+++|+-. + --+++|++.|++||.|.++.|..+..+ +++||+||+|.+.++|.+|++.+ |..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 478999999832 1 236899999999999999999888642 56799999999999999999999 999999
Q ss_pred EEEEEEEe
Q 015694 370 LIIKIVLG 377 (402)
Q Consensus 370 r~i~V~~~ 377 (402)
|.|+|.+.
T Consensus 99 R~i~v~~~ 106 (118)
T 3ue2_A 99 RKVVAEVY 106 (118)
T ss_dssp EECEEEEE
T ss_pred cEEEEEEc
Confidence 99999886
No 217
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.98 E-value=7.7e-10 Score=108.58 Aligned_cols=73 Identities=15% Similarity=0.119 Sum_probs=60.0
Q ss_pred CCCcEEEEcc--CCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCcc---CCEE--
Q 015694 300 AEGCSIYVRN--LAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLIS---LSLI-- 371 (402)
Q Consensus 300 ~~~~~lfVgn--Lp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i---~Gr~-- 371 (402)
.++.+||||| |++.+|+++|+++|++||.|..+.+ .. ++|||||+|.+.++|++|++.+ |..+ .|+.
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~--~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM--PP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEEC--CT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEE--eC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 4478999999 5789999999999999999988654 22 5799999999999999999999 7766 3553
Q ss_pred EEEEEe
Q 015694 372 IKIVLG 377 (402)
Q Consensus 372 i~V~~~ 377 (402)
|.|.+.
T Consensus 91 ly~~~~ 96 (345)
T 3tht_A 91 LYLNFV 96 (345)
T ss_dssp CEEEEC
T ss_pred EEEEEe
Confidence 455544
No 218
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=3.7e-09 Score=88.24 Aligned_cols=74 Identities=18% Similarity=0.131 Sum_probs=64.8
Q ss_pred CCCCCcEEEEccCCCC-CCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCC-HHHHHHHHHhC---CCccCCEEE
Q 015694 298 EEAEGCSIYVRNLAFT-TTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFET-PGSVQSALEVL---SLISLSLII 372 (402)
Q Consensus 298 ~~~~~~~lfVgnLp~~-vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~-~~~a~~Al~~~---~~~i~Gr~i 372 (402)
..+.|+.|||+||+.+ ++.++|+++|++||.|.+|.+..+.. .|||.|.+ ..+|..|++.+ +..|+|..+
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 4567999999999999 99999999999999999998865533 59999999 88999999987 889999887
Q ss_pred EEEE
Q 015694 373 KIVL 376 (402)
Q Consensus 373 ~V~~ 376 (402)
++.+
T Consensus 89 ~~ev 92 (121)
T 1owx_A 89 TWEV 92 (121)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7754
No 219
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.87 E-value=2.3e-09 Score=88.81 Aligned_cols=74 Identities=11% Similarity=0.012 Sum_probs=60.8
Q ss_pred CcEEEEccCCCCC----------CHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCE
Q 015694 302 GCSIYVRNLAFTT----------TSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSL 370 (402)
Q Consensus 302 ~~~lfVgnLp~~v----------te~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr 370 (402)
++.|.++|+=..- -+++|++.|++||.|.++.|..+ + .+|||||+|.+.++|.+|++.| |..++||
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~--~-~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN--S-AQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT--C-TTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC--C-CcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 5678888873322 12578999999999999876333 2 5899999999999999999999 9999999
Q ss_pred EEEEEEee
Q 015694 371 IIKIVLGV 378 (402)
Q Consensus 371 ~i~V~~~~ 378 (402)
.|+|.++.
T Consensus 84 ~i~v~~~~ 91 (114)
T 3s6e_A 84 MITAAYVP 91 (114)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEEc
Confidence 99999874
No 220
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.69 E-value=3.6e-08 Score=77.62 Aligned_cols=73 Identities=21% Similarity=0.141 Sum_probs=59.4
Q ss_pred CCCcEEEEccCCC----CCCH----HHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEE
Q 015694 300 AEGCSIYVRNLAF----TTTS----TELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLSLI 371 (402)
Q Consensus 300 ~~~~~lfVgnLp~----~vte----~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~ 371 (402)
+...+|+|..++. +.-+ .+|.+.|++||.|..+++..+ .+||+|.+.++|.+||+..|..++||+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHhcCCeEeCCeE
Confidence 3456888877662 3333 678999999999999988654 389999999999999994499999999
Q ss_pred EEEEEeee
Q 015694 372 IKIVLGVY 379 (402)
Q Consensus 372 i~V~~~~~ 379 (402)
|+|.++.+
T Consensus 78 LkV~lkt~ 85 (91)
T 2dnr_A 78 ITIALKSP 85 (91)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99998764
No 221
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.45 E-value=1.5e-07 Score=74.41 Aligned_cols=71 Identities=21% Similarity=0.169 Sum_probs=58.4
Q ss_pred CCCCcEEEEccCCCC------CCH---HHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCC
Q 015694 299 EAEGCSIYVRNLAFT------TTS---TELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLS 369 (402)
Q Consensus 299 ~~~~~~lfVgnLp~~------vte---~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~G 369 (402)
.+...+|+|..++.. ..+ .+|.+.|.+||.|..+++..++ +||+|.+.++|.+||+..|..++|
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~ldG~~v~G 84 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLDVDGMKVKG 84 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHHGGGSEETT
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHhcCCeeeCC
Confidence 345678999888643 232 5688999999999999887654 999999999999999944999999
Q ss_pred EEEEEEE
Q 015694 370 LIIKIVL 376 (402)
Q Consensus 370 r~i~V~~ 376 (402)
|.|+|.+
T Consensus 85 r~L~V~~ 91 (95)
T 1ufw_A 85 RAVKISG 91 (95)
T ss_dssp EEEEEEC
T ss_pred eEEEEec
Confidence 9999976
No 222
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.43 E-value=2.8e-07 Score=84.44 Aligned_cols=63 Identities=14% Similarity=0.110 Sum_probs=56.9
Q ss_pred CHHHHHHHhhcCCCeeEEEEEEcCCC-----CcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 315 TSTELEEAFKIFGPIKKNGVQVRSNK-----QGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 315 te~~L~~~F~~fG~I~~~~v~~~~~~-----~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
.+++|++.|++||.|.++.|..+..+ +++||+||+|.+.++|.+|++.+ |..++||.|.+.+.
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 45789999999999999998766544 68999999999999999999999 99999999999875
No 223
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.70 E-value=0.00013 Score=59.04 Aligned_cols=69 Identities=12% Similarity=0.003 Sum_probs=59.5
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcC-----CCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEE
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIF-----GPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIV 375 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~f-----G~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~ 375 (402)
.++|-+-|||-++++..|+.+...+ |.|+.+.+.-|- .| |+|+|.|...|-+|.-++ |..|+||+|++.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH----~G-Aivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF----NG-AIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT----TE-EEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC----Cc-eEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 5788888999999999999999999 999987765442 33 999999999988887666 999999999874
No 224
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.63 E-value=0.0002 Score=57.26 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=65.8
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhc-----CCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCCEEEEEEE
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKI-----FGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLSLIIKIVL 376 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~-----fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~Gr~i~V~~ 376 (402)
+++|.|.|||.++.++.|+-+|++ -|.|..+.. .. +-|+|+|.+...+++.|+...|.|+|.+|.|..
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~--~~-----~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQR--LG-----CGGVLTFREPADAERVLAQADHELHGAQLSLRP 80 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEE--ET-----TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEE--cC-----CcEEEEEcChHHHHHHhcCCcceecCeEEEEEc
Confidence 689999999999999999999986 256666443 22 459999999999999999889999999999999
Q ss_pred eeeecccce
Q 015694 377 GVYIISRTF 385 (402)
Q Consensus 377 ~~~~~~~~~ 385 (402)
...++++.+
T Consensus 81 ~~~~~~~r~ 89 (104)
T 2dhx_A 81 APPRAPARL 89 (104)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCcceE
Confidence 999888754
No 225
>4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus}
Probab=97.08 E-value=0.0042 Score=52.44 Aligned_cols=107 Identities=8% Similarity=0.072 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcC---CCCcceEEEeeeEeeeeCCCc
Q 015694 15 VGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL---NYEDYTAEIKTADAQDSYEKG 90 (402)
Q Consensus 15 vg~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl---~~~~~~~~I~~~d~q~s~~~~ 90 (402)
--..++..|+..++ .+.+.|..+|.++..+...|. ...|.++|.+.+... .+.+..+.+...+.....++.
T Consensus 20 ~i~~l~~~y~~A~~~~D~d~~~~lf~~Da~~~~~g~-----~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 94 (143)
T 4i4k_A 20 AVAALPARIVAAWADHDADRFADVFAEDGTMILPGL-----FRKGRENIRTHMAAAFAGPYKGTRVIGSPIDARLLGDGI 94 (143)
T ss_dssp HHHTHHHHHHHHHHTTCHHHHHTTEEEEEEEEETTE-----EEESHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEETTE
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHhhcCceEEeCCC-----eecCHHHHHHHHHHHHhhcCCCCeEEeeeEEEEEcCCCE
Confidence 34678899999998 678899999999987765543 688999999887532 334445555555555444555
Q ss_pred EEEEEEEEEEeCCC----cccceeEEEEeeEcCCCcEEEEe
Q 015694 91 VIVLVTGCLTGKDN----VKKKFTQTFFLAPQDKGGYFVLN 127 (402)
Q Consensus 91 vlv~V~G~l~~~~~----~~r~F~qtF~L~~~~~~~y~V~n 127 (402)
.++...|.+...+. +.+.+.+|+++...++ +|.|..
T Consensus 95 A~v~~~~~~~~~g~~~~~~~~~~~~T~v~~r~~g-~WrI~~ 134 (143)
T 4i4k_A 95 ALLITEGGILAPGETEASGDGAVRASWLAVEQDG-QWRLAA 134 (143)
T ss_dssp EEEEEEEEEECTTCSSCCGGGEEEEEEEEEEETT-EEEEEE
T ss_pred EEEEeccceecCCCCCCCcccceEEEEEEEEECC-cEEEEE
Confidence 55555566655443 2467899999998876 899876
No 226
>3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: MSE GOL; 1.40A {Caulobacter vibrioides}
Probab=96.53 E-value=0.047 Score=46.16 Aligned_cols=113 Identities=12% Similarity=0.110 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeee-ccCCCCccceeccHHHHHHHHhc---CCCCcceEEEeeeEeeeeCCCcE
Q 015694 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLS-RPDSNGSMTTVTTMKAINDRILS---LNYEDYTAEIKTADAQDSYEKGV 91 (402)
Q Consensus 17 ~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~-~~~~~~~~~~~~g~~~I~~~i~s---l~~~~~~~~I~~~d~q~s~~~~v 91 (402)
..++..|...++ .+.+.|..+|.++..+. ..|. ...|.++|.+.+.. -.+.+..+.+...+.....++..
T Consensus 9 ~~l~~~~~~A~~~~D~d~~~~lf~~Da~~~~~~G~-----~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~A 83 (146)
T 3gzr_A 9 QALIQAYFTAWNTNAPERFAEIFWPDGSWVNVVGM-----HWRGRDQIVFAHTAFLKTIFKDCKQELVTIEARTIAPGSA 83 (146)
T ss_dssp HHHHHHHHHHHHTTCGGGSGGGEEEEEEEECTTCC-----EEESHHHHHHHHHHHHHTTTTTCCEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHcCCHHHHHhhccCCeEEEcCCCC-----eeeCHHHHHHHHHHHhhcccCCCEEEEeEEEEEEcCCCEE
Confidence 678899999998 68899999999988765 5553 68899999987643 23444444544444444334545
Q ss_pred EEEEEEEEE---eCCCc---ccceeEEEEeeEcCCCcEEEEeceEEeecc
Q 015694 92 IVLVTGCLT---GKDNV---KKKFTQTFFLAPQDKGGYFVLNDVFRFVEE 135 (402)
Q Consensus 92 lv~V~G~l~---~~~~~---~r~F~qtF~L~~~~~~~y~V~nDifr~~~~ 135 (402)
++.+...+. ..+.. ...+.++++|...++ +|.|..+--..++.
T Consensus 84 ~v~~~~~l~g~~~~~G~~~~~~~~~~t~v~vr~dg-~WrI~a~h~s~v~p 132 (146)
T 3gzr_A 84 LAVVTLIQDAYVTPDGRQMPRAHDRLTLLAVEREG-VWRFIHGHNTIVNP 132 (146)
T ss_dssp EEEEEEEECCEECTTCCEECCEEEEEEEEEEEETT-EEEEEEEEEEECCT
T ss_pred EEEEEEEecceeCCCCCcCCccCcEEEEEEEEECC-EEEEEEEecccCcC
Confidence 555444443 12222 246789999998875 99999877665543
No 227
>3cu3_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Nostoc punctiforme} SCOP: d.17.4.28
Probab=96.51 E-value=0.016 Score=50.14 Aligned_cols=113 Identities=10% Similarity=-0.020 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHc-cCcccccccccCCCeeec-cCCCCccceeccHHHHHHHHhcC---CCCcceEEEeeeEeeeeCCC
Q 015694 15 VGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSR-PDSNGSMTTVTTMKAINDRILSL---NYEDYTAEIKTADAQDSYEK 89 (402)
Q Consensus 15 vg~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~-~~~~~~~~~~~g~~~I~~~i~sl---~~~~~~~~I~~~d~q~s~~~ 89 (402)
--..++..|+..++ .+.+.|..+|.++..+.. .|. ...|.++|.+.+..+ .+...++.+...+.....++
T Consensus 17 aI~~~~~~~~~A~~~~D~d~~~~lfa~Da~~~~~~g~-----~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d 91 (172)
T 3cu3_A 17 AIRAFHRQMIDAWNRGSGEGFAAPFSETADFITFEGT-----HLKGRKEIAAFHQQAFDTVVKGTRLEGEVDFVRFVNSQ 91 (172)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTCC-----EEEHHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHhhcCCCeEEEeCCCC-----eEECHHHHHHHHHHHhhccCCCcEEEEEEeEEEEeCCC
Confidence 44678999999998 688899999999987764 443 689999999987653 23333444333333333344
Q ss_pred cEEEEEEEEEEeCCC----cccceeEEEEeeEcCCCcEEEEeceEEee
Q 015694 90 GVIVLVTGCLTGKDN----VKKKFTQTFFLAPQDKGGYFVLNDVFRFV 133 (402)
Q Consensus 90 ~vlv~V~G~l~~~~~----~~r~F~qtF~L~~~~~~~y~V~nDifr~~ 133 (402)
..++...+.+...+. +.+.+..+++|...++ +|.|...-...+
T Consensus 92 ~A~v~~~~~~~~~g~~~~~~~~~~~~t~v~~r~dG-~WrI~~~~~s~~ 138 (172)
T 3cu3_A 92 LALMLVVIRVILPGQTETSASRDSLPLYVVTKGDE-GWQIEGLLNTRK 138 (172)
T ss_dssp EEEEEEEEEEECTTCSSBCGGGCBCCEEEEEEETT-EEEEEEEECCBC
T ss_pred EEEEEEEEEEEeCCCCCcCCccceEEEEEEEEeCC-eEEEEEEEcCcc
Confidence 455555555665443 2355667777777764 899988655433
No 228
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.43 E-value=0.0032 Score=50.42 Aligned_cols=74 Identities=12% Similarity=0.058 Sum_probs=59.3
Q ss_pred CcEEEEccCCCCC-CH----HHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEE
Q 015694 302 GCSIYVRNLAFTT-TS----TELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIV 375 (402)
Q Consensus 302 ~~~lfVgnLp~~v-te----~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~ 375 (402)
.++|+|.||+.++ .. ..++++|..|+++....... +..-..|.|.+.++|.+|-..+ +..++|++|+|.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk-----SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK-----SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET-----TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC-----cceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 3689999998865 22 56789999999988755432 2224689999999999999999 999999999999
Q ss_pred Eeeee
Q 015694 376 LGVYI 380 (402)
Q Consensus 376 ~~~~~ 380 (402)
+|-..
T Consensus 80 Fgq~~ 84 (104)
T 1wey_A 80 FAQTL 84 (104)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 98733
No 229
>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti}
Probab=96.41 E-value=0.034 Score=44.71 Aligned_cols=115 Identities=17% Similarity=0.113 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCC-CCcceEEEeeeEeeeeCCC
Q 015694 12 AQVVGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN-YEDYTAEIKTADAQDSYEK 89 (402)
Q Consensus 12 ~~~vg~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~-~~~~~~~I~~~d~q~s~~~ 89 (402)
....=...+.+|+..++ .+.+.|..+|.++..+...+. ..+.|.++|.+.+..+- .....+.+........ ++
T Consensus 4 ~~~~I~~~~~~~~~a~~~~D~~~~~~l~a~Da~~~~~~~----~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~v~~~-gd 78 (129)
T 3hx8_A 4 AKEAIEAANADFVKAYNSKDAAGVASKYMDDAAAFPPDM----ARVDGRQNIQKLWQGAMDMGISELKLTTLDVQES-GD 78 (129)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTS----CCEESHHHHHHHHHHHHHTTCEEEEEEEEEEEEE-TT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHhhCCCeEEeCCCC----CcccCHHHHHHHHHHHHhCCCceEEEEEEEEEcC-CC
Confidence 34455778999999999 677899999999988754432 15789999998775431 1113455655555533 33
Q ss_pred cEEEEEEEEEEe--CCCccc--ceeEEEEeeEcCCCcEEEEeceEE
Q 015694 90 GVIVLVTGCLTG--KDNVKK--KFTQTFFLAPQDKGGYFVLNDVFR 131 (402)
Q Consensus 90 ~vlv~V~G~l~~--~~~~~r--~F~qtF~L~~~~~~~y~V~nDifr 131 (402)
..++...-.++. .+.... ...-+.++....+|+|.|..|.+.
T Consensus 79 ~A~~~~~~~~~~~~~~G~~~~~~g~~~~v~~r~~dG~W~i~~~~~~ 124 (129)
T 3hx8_A 79 FAFESGSFSLKAPGKDSKLVDAAGKYVVVWRKGQDGGWKLYRDIWN 124 (129)
T ss_dssp EEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred EEEEEEEEEEEeeCCCCCeeeeeEEEEEEEEECCCCcEEEEEeecc
Confidence 333332222222 222222 223344555563569999999884
No 230
>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27
Probab=96.11 E-value=0.029 Score=45.62 Aligned_cols=114 Identities=19% Similarity=0.196 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCC--CC-cceEEEeeeEeeeeCCC
Q 015694 14 VVGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YE-DYTAEIKTADAQDSYEK 89 (402)
Q Consensus 14 ~vg~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~--~~-~~~~~I~~~d~q~s~~~ 89 (402)
.--...+..||..++ .+.+.|..+|.++..+...+. ....|.++|.+.+..+- +. ...+.|..+... .++
T Consensus 11 ~~i~~~~~~~~~a~~~~D~~~~~~l~a~D~v~~~~~~----~~~~G~~ai~~~~~~~~~~~~~~~~~~~~~i~~~--~gd 84 (135)
T 3d9r_A 11 AVIEAAAIAYLTAFNRADIPAVIATYTDDGVLMGPGR----PAAVGKDELAEVYLSVFETVGFDMAYEIKEVVQT--SAD 84 (135)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECTTS----CCEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEE--ETT
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCCC----CcccCHHHHHHHHHHHHhhcCCceeEEEEEEEEe--cCC
Confidence 345688999999999 577899999999988765543 13579999998886542 11 233344433321 233
Q ss_pred cEEEEEE--EEEEeC-CCcc--cceeEEEEeeEcCCCcEEEEeceEEee
Q 015694 90 GVIVLVT--GCLTGK-DNVK--KKFTQTFFLAPQDKGGYFVLNDVFRFV 133 (402)
Q Consensus 90 ~vlv~V~--G~l~~~-~~~~--r~F~qtF~L~~~~~~~y~V~nDifr~~ 133 (402)
..++... |.++.. +... ..+.-+++|....+|+|.|..+.|...
T Consensus 85 ~a~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~dG~W~i~~~~~s~~ 133 (135)
T 3d9r_A 85 WAFVRSATEGTETNKATGVVTPAAYQELFLLRKSATGSWQTARYCTSKI 133 (135)
T ss_dssp EEEEEEEEEEEEEETTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred EEEEEEEEEEEEecCCCCCceeecccEEEEEEecCCCcEEEEEEeeccc
Confidence 3333322 333332 2222 234456677776356999999998754
No 231
>2gxf_A Hypothetical protein YYBH; alpha-beta protein., structural genomics, PSI, protein structure initiative; HET: MES; 3.10A {Bacillus subtilis} SCOP: d.17.4.22
Probab=95.75 E-value=0.065 Score=44.52 Aligned_cols=108 Identities=11% Similarity=0.209 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCCC---CcceEEEeeeEeeeeCCCcEE
Q 015694 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNY---EDYTAEIKTADAQDSYEKGVI 92 (402)
Q Consensus 17 ~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~---~~~~~~I~~~d~q~s~~~~vl 92 (402)
...+..||..++ .+.+.|..+|.++..+.... |. ...|.++|.+.+..+-- ....+.+..+..... ++..+
T Consensus 6 ~~l~~~~~~A~~~~D~d~~~~lfa~Dav~~~~~--g~--~~~G~~aI~~~~~~~~~~~~~~~~~~~~~~~v~~~-gd~A~ 80 (142)
T 2gxf_A 6 KDIISACDLAIQNEDFDTLMNYYSEDAVLVVKP--GM--IARGKEEIKKAFITIANYFNHHIVPTQGKMILLEA-GDTVL 80 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHTTSEEEEEEEECSS--SC--EEEHHHHHHHHHHHTTSCCCSSCCCEEEEEEEEEE-TTEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHhcCCCEEEEcCC--CC--cccCHHHHHHHHHHHHHhhCCCceEEEEEEEEEEc-CCEEE
Confidence 467889999998 67889999999998775332 21 68999999998875421 223445555555443 33344
Q ss_pred EEEEEEEEe-CCCcc--cceeEEEEeeEcCCCcEEEEece
Q 015694 93 VLVTGCLTG-KDNVK--KKFTQTFFLAPQDKGGYFVLNDV 129 (402)
Q Consensus 93 v~V~G~l~~-~~~~~--r~F~qtF~L~~~~~~~y~V~nDi 129 (402)
+.....+.. .+... ....-++++..+.+|+|.|..|.
T Consensus 81 ~~~~~~~~~~~~G~~~~~~g~~t~v~~r~~dG~Wri~~d~ 120 (142)
T 2gxf_A 81 VLSQTLLDSDKKDSEYAMERRATYVFKKNAQGEWLCVIDN 120 (142)
T ss_dssp EEEEEECCC---------EEEEEEEEEECTTSCEEEEEEE
T ss_pred EEEEEEEEECCCCCeEeeeEEEEEEEEECCCCCEEEEEEC
Confidence 333433432 11111 22233677777656689987765
No 232
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.58 E-value=0.05 Score=42.96 Aligned_cols=54 Identities=22% Similarity=0.310 Sum_probs=43.9
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL 363 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~ 363 (402)
.+-+++ +.|......||.++|+.||.|. |.++ | + .-|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~Wi-d-D----TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWI-D-D----TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEE-E-T----TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEE-c-C----CeEEEEecCHHHHHHHHHhc
Confidence 567777 9999999999999999999665 3332 2 2 26999999999999998854
No 233
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.36 E-value=0.071 Score=41.66 Aligned_cols=65 Identities=12% Similarity=0.170 Sum_probs=50.7
Q ss_pred cEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC---CcccEEEEEeCCHHHHHHHHHhC-CCcc
Q 015694 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK---QGYCFGFVAFETPGSVQSALEVL-SLIS 367 (402)
Q Consensus 303 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~---~~~gfgFVeF~~~~~a~~Al~~~-~~~i 367 (402)
++|-|++||.++|++++.+.++.++.+........+.+ ...+-|||.|.+.+++..-.+.. |+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 57899999999999999999999887766554443333 34567899999999888877766 6654
No 234
>3rob_A Uncharacterized conserved protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.48A {Planctomyces limnophilus}
Probab=95.08 E-value=0.063 Score=45.10 Aligned_cols=110 Identities=6% Similarity=-0.005 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCCCCcc--eEEEeeeEeeeeCC
Q 015694 12 AQVVGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDY--TAEIKTADAQDSYE 88 (402)
Q Consensus 12 ~~~vg~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~~~~--~~~I~~~d~q~s~~ 88 (402)
-+.--++.++.|+.-++ .+.+.|..+|.++.++...|. ...|.++|.+.+...- ..+ .......+.+...+
T Consensus 15 de~aI~~l~~~~~~A~~~gD~~~l~al~a~D~v~~~~g~-----~~~Gr~ai~a~~~~~~-~~~~~~~~~~~~~i~v~GD 88 (139)
T 3rob_A 15 DELAIRTVQYRWLEATRKFDRQVLSSLMTDDVVFLTPGR-----LPFGKEEFLAACEQND-QRVIIEASATFEEIVIVEP 88 (139)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECTTS-----CCBCHHHHHHHHHHHH-HHEEEEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHccCcEEEECCCC-----CccCHHHHHHHHHHHH-HhcCCCCceEEEEEEEcCC
Confidence 35577899999999998 788899999999998766553 3459999998764321 111 12222223333322
Q ss_pred CcEEEEEEEEE----EeC-CCccc--ceeEEEEeeEcCCCcEEEEeceE
Q 015694 89 KGVIVLVTGCL----TGK-DNVKK--KFTQTFFLAPQDKGGYFVLNDVF 130 (402)
Q Consensus 89 ~~vlv~V~G~l----~~~-~~~~r--~F~qtF~L~~~~~~~y~V~nDif 130 (402)
+-.+.|.. +.. +.... ...-+++|..+.+|+|.|..|.-
T Consensus 89 ---~A~~~~~~~~~~t~~~~g~~~~~~g~~~~v~rK~~dG~W~i~~d~~ 134 (139)
T 3rob_A 89 ---MAYTRTHLHIKVTPRSGGAVRELAGHAMSIFRRSMFGEWQLARDAN 134 (139)
T ss_dssp ---EEEEEEEEEEEEEETTSCCCEEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred ---eEEEEEEEEEEEecCCCCceeEeeccEEEEEEECCCCcEEEEEEhh
Confidence 22333433 322 33333 33366788887777999999874
No 235
>3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV}
Probab=95.02 E-value=0.57 Score=39.35 Aligned_cols=124 Identities=15% Similarity=0.165 Sum_probs=71.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCC--CCcceEEEe
Q 015694 3 VQEGSPAPSAQVVGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YEDYTAEIK 79 (402)
Q Consensus 3 ~~~~~~~~~~~~vg~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~--~~~~~~~I~ 79 (402)
|..+.+...-..--...+.+|+..++ .+.+.|..+|.++..+..... + ....|.++|.+.+..+- +....+.+.
T Consensus 9 ~~a~~~~~~d~~~I~~~~~~~~~A~~~~D~~~l~~l~a~Dav~~~~~~-~--~~~~G~~~i~~~~~~~~~~~~~~~i~~~ 85 (156)
T 3h51_A 9 DKAALPADGEAREVAALFDTWNAALATGNPHKVADLYAPDGVLLPTVS-N--EVRASREQIENYFEMFLTKKPKGVINYR 85 (156)
T ss_dssp SCCCCCSSSHHHHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEECSSC-S--SCBCSHHHHHHHHHHHGGGCCEEEEEEE
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHhhcCCCEEEecCCC-C--ccccCHHHHHHHHHHHHhhCCCCcccce
Confidence 33444434445555778888999888 788899999999886642111 1 14789999998876432 111233333
Q ss_pred eeEeeeeCCCcEEEEEEEEEE--e--CCCc--ccceeEEEEeeEcCCCcEEEEeceEEeec
Q 015694 80 TADAQDSYEKGVIVLVTGCLT--G--KDNV--KKKFTQTFFLAPQDKGGYFVLNDVFRFVE 134 (402)
Q Consensus 80 ~~d~q~s~~~~vlv~V~G~l~--~--~~~~--~r~F~qtF~L~~~~~~~y~V~nDifr~~~ 134 (402)
.+. - .++. +..++|.+. . .+.. ......|+++...+ |+|.|..+-+..+.
T Consensus 86 ~i~--~-~~gd-~A~~~~~~~~~~~~~~G~~~~~~~r~t~v~~r~d-G~WkIv~~H~S~~p 141 (156)
T 3h51_A 86 TVR--L-LDDD-SAVDAGVYTFTLTDKNGKKSDVQARYTFVYEKRD-GKWLIINHHSSAMP 141 (156)
T ss_dssp EEE--E-CSSS-EEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEET-TEEEEEEEEEEECS
T ss_pred EEE--E-ecCC-eEEEEEEEEEEEEcCCCCeEEEEeEEEEEEEEEC-CEEEEEEEeecCCC
Confidence 332 2 3222 233455433 2 2222 23335566666665 49999988776553
No 236
>3b7c_A Uncharacterized protein; NTF-2 like protein, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.70A {Shewanella oneidensis} SCOP: d.17.4.16
Probab=94.98 E-value=0.43 Score=38.42 Aligned_cols=105 Identities=7% Similarity=-0.054 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHc-cCcccccccc--cCCCeeeccCCCCccceeccHHHHHHHHhcC---CCCcceEEEeeeEeeeeCCCc
Q 015694 17 NAFVEQYYHILH-QSPGLVHRFY--QDSSLLSRPDSNGSMTTVTTMKAINDRILSL---NYEDYTAEIKTADAQDSYEKG 90 (402)
Q Consensus 17 ~~FV~~YY~~l~-~~p~~L~~fY--~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl---~~~~~~~~I~~~d~q~s~~~~ 90 (402)
..-++.||..++ .+.+.|..+| .++..+...+. ...|.++|.+.+..+ ++....+++.-++.+...++.
T Consensus 8 ~~~~~~~~~A~~~~D~~~~~~~y~~~~d~~~~~~~~-----~~~G~~~i~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~ 82 (122)
T 3b7c_A 8 VQLLKGQEEAWNRGDLDAYMQGYWQNEQLMLISNGK-----FRNGWDETLAAYKKNYPDKESLGELKFTIKEIKMLSNYA 82 (122)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTBCCSTTCEEECSSC-----EEECHHHHHHHHHHHCSSGGGSCEEEEEEEEEEEEETTE
T ss_pred HHHHHHHHHHHHcCCHHHHHHhhcCCCCEEEECCCc-----cccCHHHHHHHHHHhcCChhhcCeeEEEEEEEEEcCCCE
Confidence 345666777776 7888999999 55555544332 588999999876542 122234555555655543332
Q ss_pred EEEEEEEEEEeCCCcccceeEEEEeeEcCCCcEEEEec
Q 015694 91 VIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLND 128 (402)
Q Consensus 91 vlv~V~G~l~~~~~~~r~F~qtF~L~~~~~~~y~V~nD 128 (402)
.++.....+...+... ...-|++|...++ +|.|..+
T Consensus 83 a~v~~~~~~~~~~~~~-~~r~T~v~~k~~g-~W~Iv~~ 118 (122)
T 3b7c_A 83 AMVVGRWDLKRLKDTP-TGVFTLLVEKIDD-RWVITMD 118 (122)
T ss_dssp EEEEEEEEEECSSCCC-EEEEEEEEEEETT-EEEEEEE
T ss_pred EEEEEEEEEEccCCCC-CcEEEEEEEEeCC-CEEEEEE
Confidence 3332233343332222 2346788888876 8999876
No 237
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.96 E-value=0.067 Score=43.87 Aligned_cols=63 Identities=13% Similarity=0.094 Sum_probs=51.0
Q ss_pred CCcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCC
Q 015694 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLS 369 (402)
Q Consensus 301 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~G 369 (402)
+.+-|-|-+.+... ...+-..|++||.|.+... .....+-.|.|.+..+|++||..+|..|+|
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-----~~~~NWihI~Y~s~~~A~rAL~kNG~ii~g 85 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-----SNTGNWMHIRYQSKLQARKALSKDGRIFGE 85 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-----CSSSSEEEEEESSHHHHHHHHTTTTCEETT
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-----CCCCCeEEEEeCCHHHHHHHHHhCCeEecC
Confidence 35678888888875 6678888999999987554 224568899999999999999999888875
No 238
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.63 E-value=0.037 Score=43.78 Aligned_cols=53 Identities=21% Similarity=0.313 Sum_probs=42.4
Q ss_pred cEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC
Q 015694 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL 363 (402)
Q Consensus 303 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~ 363 (402)
+-+++ +.|......||.++|+.||.|. |.+ -.++ -|||.|.+++.|..|+..+
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~-I~W--idDT----sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISW--IDDT----SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE-EEE--EETT----EEEEEEEEECHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE-EEE--EcCC----eEEEEecCHHHHHHHHHhc
Confidence 55677 9999999999999999999543 333 2233 6999999999999999854
No 239
>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259}
Probab=94.51 E-value=0.25 Score=41.58 Aligned_cols=108 Identities=13% Similarity=0.102 Sum_probs=65.8
Q ss_pred HHHHHHHHHHc-cCcccccccccCCC--eeeccCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeEeeeeCC-CcEEE
Q 015694 18 AFVEQYYHILH-QSPGLVHRFYQDSS--LLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYE-KGVIV 93 (402)
Q Consensus 18 ~FV~~YY~~l~-~~p~~L~~fY~~~S--~l~~~~~~~~~~~~~g~~~I~~~i~sl~~~~~~~~I~~~d~q~s~~-~~vlv 93 (402)
+-.+.||..|+ .+.+.|..+|.++. .+...+. . ...|.++|.+.+..+=-..-...|+..|.+-..+ +..++
T Consensus 12 ~~~~af~~A~~~gD~da~~al~a~d~~v~~v~p~g--~--~l~G~~ai~~~w~~~f~~~~~~~i~~~~v~v~~~gd~A~v 87 (144)
T 3gwr_A 12 AAEDAFYAAFEARSLDDMMAVWARDDHVACIHPLA--A--PLNGRAAVAAGWRSMFGAAGRFRLQVKAVHEIRQADHVIR 87 (144)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHBCSSSCCEEECTTC--C--CEESHHHHHHHHHHHHHHHCCEEEEEEEEEEEECSSEEEE
T ss_pred HHHHHHHHHHHcCCHHHHHhhccCCCCEEEECCCC--C--CcccHHHHHHHHHHHHcCCCcEEEEEEEEEEEecCCEEEE
Confidence 44567788888 78889999999874 3334432 1 5789999998775321001034444444443323 33555
Q ss_pred EEEEEEEeCC--CcccceeEEEEeeEcCCCcEEEEeceE
Q 015694 94 LVTGCLTGKD--NVKKKFTQTFFLAPQDKGGYFVLNDVF 130 (402)
Q Consensus 94 ~V~G~l~~~~--~~~r~F~qtF~L~~~~~~~y~V~nDif 130 (402)
.+...+...+ .....+.-|+++..+++ +|.|...=-
T Consensus 88 ~~~e~~~~~~~~g~~~~~r~T~V~~r~~g-~WrivhhH~ 125 (144)
T 3gwr_A 88 IVDEFLTIGDETAPRPAILATNVYRREAD-GWRMVLHHA 125 (144)
T ss_dssp EEEEEEEETTCSSCCCCEEEEEEEEECSS-SEEEEEEEE
T ss_pred EEEEEEEecCCCCceeeEEEEEEEEEECC-EEEEEEEec
Confidence 5556666532 22256777888888776 898877433
No 240
>2ux0_A Calcium-calmodulin dependent protein kinase (CAM II gamma; transferase, oligomerisation DOM serine- threonine kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7 PDB: 2w2c_A 1hkx_A*
Probab=93.79 E-value=0.65 Score=38.14 Aligned_cols=112 Identities=12% Similarity=0.018 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcC-C--CCcceEEEeeeEeeeeCCCcE
Q 015694 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL-N--YEDYTAEIKTADAQDSYEKGV 91 (402)
Q Consensus 16 g~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl-~--~~~~~~~I~~~d~q~s~~~~v 91 (402)
-..+.++||..++ .+.+.|..+|.++..+...+..|. ...|.++|.+.+..+ . ....++++.....+...++.+
T Consensus 15 I~~l~~~~~~A~~~~D~~~~~~l~a~d~~~~~~~~~g~--~~~G~~~~r~~~~~~~~~~~~~~~~~~~~~~v~~~gd~aa 92 (143)
T 2ux0_A 15 IIKITEQLIEAINNGDFEAYTKICDPGLTSFEPEALGN--LVEGMDFHKFYFENLLSKNSKPIHTTILNPHVHVIGEDAA 92 (143)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHEEEEEEEECGGGTTC--EEEHHHHHHHHHHHTTTTCCSCEEEEEEEEEEEECSTTEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCcEEEeccCCCc--EEEcHHHHHHHHHhhhhcCCCceeEEEeCCEEEEecCcEE
Confidence 3466777777777 789999999998876543321121 578999999887654 1 223455666655665543433
Q ss_pred EEEEEEEEEe--CC-Cc--ccceeEEEEeeEcCCCcEEEEeceEE
Q 015694 92 IVLVTGCLTG--KD-NV--KKKFTQTFFLAPQDKGGYFVLNDVFR 131 (402)
Q Consensus 92 lv~V~G~l~~--~~-~~--~r~F~qtF~L~~~~~~~y~V~nDifr 131 (402)
+ .....+.. .. .. ...+.-|+++...++ +|.|..+=..
T Consensus 93 v-~~~~~~~~~~~~~g~~~~~~~r~T~v~~k~~g-~Wkivh~H~S 135 (143)
T 2ux0_A 93 C-IAYIRLTQYIDGQGRPRTSQSEETRVWHRRDG-KWLNVHYHCS 135 (143)
T ss_dssp E-EEEEEEEEEECTTSCEEEEEEEEEEEEEEETT-EEEEEEEEEE
T ss_pred E-EEEeEeeeeecCCCCeeeeeEEEEEEEEEECC-EEEEEEEeeC
Confidence 2 22222321 21 22 234566777777764 8999886543
No 241
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.71 E-value=0.028 Score=56.85 Aligned_cols=63 Identities=13% Similarity=0.114 Sum_probs=44.4
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhCCCccCC
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVLSLISLS 369 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~~~~i~G 369 (402)
.++|||. .+..+++.+|.+.|++||+|.++.+ ++. ...|+.|+|.+.++++.++....+-.++
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~--~~~--~g~~~~vef~~~~~~~~~~~~~~~p~~~ 115 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFF--YES--FGLYAVVEFCQKESIGSLQNGTHTPXXX 115 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEE--ECS--SSEEEEEECC---CCHHHHSSCCCCCCB
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEE--Ecc--CCeEEEEEeCCHHHHHHHHhccCCCccc
Confidence 4799996 7999999999999999999998654 322 3479999999999999877665444443
No 242
>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440}
Probab=93.24 E-value=0.91 Score=37.15 Aligned_cols=113 Identities=7% Similarity=-0.029 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHh---cCCCCcceEEEeeeEeeeeCCC
Q 015694 14 VVGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRIL---SLNYEDYTAEIKTADAQDSYEK 89 (402)
Q Consensus 14 ~vg~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~---sl~~~~~~~~I~~~d~q~s~~~ 89 (402)
.--+.++.+||..++ .+.+.|..+|.++.++...+.. ....|.++|.+.+. .......++++..+..+... +
T Consensus 8 ~~I~~l~~~~~~A~~~~D~~~~~~l~a~D~v~~~~~~~---~~~~G~~air~~~~~~~~~~~~~~~~~~~~~~v~~~g-d 83 (142)
T 3f7s_A 8 SEIRQLIERWMQAVRDRDIPGIIAPYADDIVAFDAIQA---LQFKGKSAYTAHWEMCMGMCTGPMVFELAQLTVHAAG-D 83 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECSSSS---SCEESHHHHHHHHHHHHHTCCSCEEEEEEEEEEEEET-T
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHhhcCCCEEEecCCCC---ccccCHHHHHHHHHHHHHhCCCceEEEEeeeEEEEcC-C
Confidence 344677888888887 6788999999988765433221 13569999988763 22112456677766655443 3
Q ss_pred cEEEEEEEEEEeC--CCcccceeEEEEeeEcCCCcEEEEeceEE
Q 015694 90 GVIVLVTGCLTGK--DNVKKKFTQTFFLAPQDKGGYFVLNDVFR 131 (402)
Q Consensus 90 ~vlv~V~G~l~~~--~~~~r~F~qtF~L~~~~~~~y~V~nDifr 131 (402)
..++.....+... +.......-|+++...++ +|.|..+=..
T Consensus 84 ~A~~~~~~~~~~~~~~g~~~~~r~T~v~~r~~g-~W~ivh~H~S 126 (142)
T 3f7s_A 84 LALAHWLNRCGPGDDESQCGFMRATVGYRRQGG-QWQVIHEHWS 126 (142)
T ss_dssp EEEEEEEEEEEESSCGGGCEEEEEEEEEEEETT-EEEEEEEEEE
T ss_pred EEEEEEEEEEeeecCCCcceeeEEEEEEEEeCC-EEEEEEEeec
Confidence 2333222333332 223334456777777765 8998875543
No 243
>1tp6_A Hypothetical protein PA1314; structural genomics, alpha-beta sandwich, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.12
Probab=93.03 E-value=0.65 Score=38.09 Aligned_cols=107 Identities=12% Similarity=0.129 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHcc--CcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCC--CCcceEEEeeeEeeeeCCCcEE
Q 015694 17 NAFVEQYYHILHQ--SPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YEDYTAEIKTADAQDSYEKGVI 92 (402)
Q Consensus 17 ~~FV~~YY~~l~~--~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~--~~~~~~~I~~~d~q~s~~~~vl 92 (402)
..|++.+++-... +-+.|-..|.++..|...+. ...|.+++.+.+..+- +.+.+++|..+......+++++
T Consensus 13 ~~~ie~W~~~~~~~~dl~~l~a~~a~d~~mv~p~G-----~~~g~~~~~~~~~~~~g~~pgl~i~i~~l~~~~~~~d~~v 87 (128)
T 1tp6_A 13 HVAIRDWLAGDSRADALDALMARFAEDFSMVTPHG-----VVLDKTALGELFRSKGGTRPGLRIEIDGESLLASGVDGAT 87 (128)
T ss_dssp HHHHHHHHHTCCCTTHHHHHHTTEEEEEEEECTTS-----CEEEHHHHHHHHHHHTTCSTTCEEEEEEEEEEEEETTEEE
T ss_pred HHHHHHHHcCCCcHhHHHHHHHhcCCCEEEECCCC-----eECCHHHHHHHHHHhhCCCCCeEEEEEEEEEEeecCCEEE
Confidence 4555666664443 35577888999887765432 4889999999886542 3467888888887666667666
Q ss_pred EEEEEEEEeCCCcccceeEEEEeeEcCCC--cEEEEece
Q 015694 93 VLVTGCLTGKDNVKKKFTQTFFLAPQDKG--GYFVLNDV 129 (402)
Q Consensus 93 v~V~G~l~~~~~~~r~F~qtF~L~~~~~~--~y~V~nDi 129 (402)
|.-.+.=...+....+++ |.+|....+| .|.++.+.
T Consensus 88 v~y~~~~~~~~~~~~rrs-T~v~~~~~~g~~~W~~lHET 125 (128)
T 1tp6_A 88 LAYREIQSDAAGRSERLS-TVVLHRDDEGRLYWRHLQET 125 (128)
T ss_dssp EEEEEEEEETTEEEEEEE-EEEEEECTTCCEEEEEEEEE
T ss_pred EEEEEEeccCCceeEEEE-EEEEEeCCCCCEEEEEEEEE
Confidence 665433333343455677 8888666454 48888776
No 244
>3soy_A NTF2-like superfamily protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Salmonella enterica subsp}
Probab=92.78 E-value=0.6 Score=39.12 Aligned_cols=113 Identities=11% Similarity=0.095 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHccCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCCC----CcceEEEeeeE-eeeeC
Q 015694 13 QVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNY----EDYTAEIKTAD-AQDSY 87 (402)
Q Consensus 13 ~~vg~~FV~~YY~~l~~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~----~~~~~~I~~~d-~q~s~ 87 (402)
.+|-..|-+.|-.+..++.+.|..+|.++..+++.+..| ...|.++|.+.+.+-.+ ....+.+..+. .+..
T Consensus 10 ~ei~~~~~~~~~Al~~~D~~~l~~l~~~~~~~~~i~~~g---~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~v~- 85 (145)
T 3soy_A 10 QEITEGINRYLYSIDKADPTLGKQLFYVSPETSFIHPRG---HERGWSQIAENFYGTTMGKTFSKRTLKLDAPPAIHVY- 85 (145)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHTTTBCCSSSCEEEETTE---EEESHHHHHHHCCCCCCCCTEEEEEEEESSCCEEEEE-
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHhCCCCeEEEcCCC---cccCHHHHHHHHHHhhhhccccccceEEeeeeEEEEc-
Confidence 356666666555566689999999998764333322222 36899999998865322 22234454454 3333
Q ss_pred CCcEEEEEE----EEEEeCCCc-ccceeEEEEeeEcCCCcEEEEece
Q 015694 88 EKGVIVLVT----GCLTGKDNV-KKKFTQTFFLAPQDKGGYFVLNDV 129 (402)
Q Consensus 88 ~~~vlv~V~----G~l~~~~~~-~r~F~qtF~L~~~~~~~y~V~nDi 129 (402)
++..++... |.+..++.+ ...+..|+++....+|+|.|..+=
T Consensus 86 gd~A~v~~~~~~~~~~~~~G~~~~~~~r~T~V~~r~~~ggWkIvh~H 132 (145)
T 3soy_A 86 GNAAVAEFDWHFTAVRRDNGQTQHTTGRESQVWAKIPNTGWRIVHVH 132 (145)
T ss_dssp TTEEEEEEEEEEEEEETTTCCEEEEEEEEEEEEEEETTTEEEEEEEE
T ss_pred CCEEEEEEEEEEEEEEcCCCCeeeeEEEEEEEEEEcCCCCEEEEEEe
Confidence 332222222 333222322 234566677766554589998843
No 245
>2rcd_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.32A {Pectobacterium atrosepticum SCRI1043} SCOP: d.17.4.18
Probab=92.10 E-value=1.5 Score=35.46 Aligned_cols=109 Identities=10% Similarity=0.061 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHccCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeEeeeeCCCcEE
Q 015694 13 QVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGVI 92 (402)
Q Consensus 13 ~~vg~~FV~~YY~~l~~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~~~~~~~I~~~d~q~s~~~~vl 92 (402)
.+|-..|-++.--+...+.+.|..+|.++..+...+. |. ...|.++|.+.-..++-......+..+......++..+
T Consensus 14 ~ei~~~~~~y~~A~~~~D~~~l~~lf~~d~~~~~~~~-~~--~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~A~ 90 (129)
T 2rcd_A 14 ADVTAAFYRYEKALTGNDVAVLDELFWHDEKTVRYGA-GE--NLYGIEEIRAFRLARPSAGLDRALRNTVITTYGHDMAV 90 (129)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHBCCSTTCEEEET-TE--EEESHHHHHHHHHHSCCTTCCCEEEEEEEEEBTTSEEE
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhccCCCCEEEECC-CC--ccCCHHHHHHHHHhcCCCCCceEEEEEEEEEecCcEEE
Confidence 3455555444444444888899999998864332221 11 57799999983334442223344444444444333333
Q ss_pred EEEEEEEEeCCCcccceeEEEEeeEcCCCcEEEEec
Q 015694 93 VLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLND 128 (402)
Q Consensus 93 v~V~G~l~~~~~~~r~F~qtF~L~~~~~~~y~V~nD 128 (402)
++..+...+. .....+|+++...++ +|.|.+.
T Consensus 91 --~~~~~~~~~~-~~~g~~t~v~~r~~~-gWrIv~~ 122 (129)
T 2rcd_A 91 --ASTEFTRTGS-TKIGRQMQTWVKMPE-GWRIVAA 122 (129)
T ss_dssp --EEEEEECSSC-CSCEEEEEEEEEETT-EEEEEEE
T ss_pred --EEEEEEEcCC-CCceeEEEEEEECCC-cEEEEEE
Confidence 3444444322 244666888888776 8998874
No 246
>3jum_A Phenazine biosynthesis protein A/B; chirality, drug design, medicinal CH inhibitor, biosynthetic protein; HET: AOD; 1.45A {Burkholderia SP} PDB: 3b4o_A* 3b4p_A* 3dzl_A* 3ex9_A 3cnm_A* 3jun_A* 3juo_A* 3jup_A* 3juq_A*
Probab=91.99 E-value=0.36 Score=42.64 Aligned_cols=96 Identities=11% Similarity=0.103 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHccCcccccccccCCCeeeccC-CCCccceeccHHHHHHHHhcCC--CCcceEEEeeeEeeeeCCC-cE
Q 015694 16 GNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPD-SNGSMTTVTTMKAINDRILSLN--YEDYTAEIKTADAQDSYEK-GV 91 (402)
Q Consensus 16 g~~FV~~YY~~l~~~p~~L~~fY~~~S~l~~~~-~~~~~~~~~g~~~I~~~i~sl~--~~~~~~~I~~~d~q~s~~~-~v 91 (402)
-++=|++|+..+.++++.+..||.++..+.+.. ..|.+....|+++|.+.+..+. |.+ .++..+....+.++ .|
T Consensus 43 nr~vV~~yl~~~~~D~~~~~eLfAeDav~e~P~~~~G~P~r~~GReai~~~~~~~~~~~~d--~~~~~~~v~~taDpd~V 120 (185)
T 3jum_A 43 NRKIVEQYMHTRGEARLKRHLLFTEDGVGGLWTTDSGQPIAIRGREKLGEHAVWSLQCFPD--WVWTDIQIFETQDPNWF 120 (185)
T ss_dssp HHHHHHHHHHCCGGGGGGGGGGEEEEEEEEESCCTTSSCEEEESHHHHHHHHHHHHHHSTT--CEEEEEEEECCSSTTEE
T ss_pred HHHHHHHHHHHhccCHHHHHHhCCCCEEEEecCCCCCCCccccCHHHHHHHHHHHHhhCCC--CeeeEEEEEEecCCCEE
Confidence 356689999999999999999999999887643 2355557899999999875443 222 45666666666554 35
Q ss_pred EEEEEEEEE--eCCCcccceeEEE
Q 015694 92 IVLVTGCLT--GKDNVKKKFTQTF 113 (402)
Q Consensus 92 lv~V~G~l~--~~~~~~r~F~qtF 113 (402)
++-..|.-+ ..+.+...|.+.|
T Consensus 121 vvE~~~~Gtv~~TGkp~~~Y~~~y 144 (185)
T 3jum_A 121 WVECRGEGAIVFPGYPRGQYRNHF 144 (185)
T ss_dssp EEEEEEEEEECCTTSCCEEEEEEE
T ss_pred EEEEEEEEEEcCCCCccceEEEeE
Confidence 555555543 3332223355544
No 247
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=91.16 E-value=0.2 Score=42.29 Aligned_cols=31 Identities=0% Similarity=-0.139 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC
Q 015694 332 NGVQVRSNKQGYCFGFVAFETPGSVQSALEVL 363 (402)
Q Consensus 332 ~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~ 363 (402)
+.|+++.. +++|||||+|.+.++|++|++.+
T Consensus 3 ~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~ 33 (158)
T 2kn4_A 3 YKLILNGK-TLKGETTTEAVDAATAEKVFKQY 33 (158)
T ss_dssp EEEEEECS-SCEEEEEEECSSHHHHHHHHHHH
T ss_pred EEEEecCc-cccchhHHHHHHHHhHHHHHHhh
Confidence 44555554 58999999999999999999876
No 248
>2owp_A Hypothetical protein BXE_B1374; cystatin-like fold, DUF3225 family protein, structural genom joint center for structural genomics, JCSG; 2.00A {Burkholderia xenovorans} SCOP: d.17.4.18
Probab=91.09 E-value=3.1 Score=34.03 Aligned_cols=110 Identities=12% Similarity=-0.025 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHccCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeEeeeeCCCcEE
Q 015694 13 QVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGVI 92 (402)
Q Consensus 13 ~~vg~~FV~~YY~~l~~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~~~~~~~I~~~d~q~s~~~~vl 92 (402)
.+|-..|.+.|--+...+.+.|..+|.++..+.+.+. | ....|.++|......+.-....+.+.....+...++..+
T Consensus 11 ~eI~~~~~~y~~Al~~~D~~~L~~lf~~d~~~v~~~~-g--~~l~G~~~I~a~r~~~~~~~~~~~~~~~~i~~~g~d~A~ 87 (129)
T 2owp_A 11 AQVQAAFVEYERALVENDIEAMNALFWHTPETVRYGI-A--EVQHGGEAIRAWRERCEPVPKSRKLHRTVVTTFGTDFAT 87 (129)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHTBCCSTTCEEECS-S--CEEESHHHHHHHHHHSCCCCTTCEEEEEEEEEETTTEEE
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHhhccCCCcEEEeCC-C--CccCCHHHHHHHHHhcCCCCCceeecccEEEEecCCEEE
Confidence 4566666666666666999999999998874322222 1 157899999996655542212344544443333333333
Q ss_pred EEEEEEEEeCCCcccceeEEEEeeEcC--CCcEEEEece
Q 015694 93 VLVTGCLTGKDNVKKKFTQTFFLAPQD--KGGYFVLNDV 129 (402)
Q Consensus 93 v~V~G~l~~~~~~~r~F~qtF~L~~~~--~~~y~V~nDi 129 (402)
+. ..+...+.. ..+-|+.+....+ . +|.|...=
T Consensus 88 ~~--~~~~~~~~~-~~gr~t~vw~r~~~~~-gWrIv~~H 122 (129)
T 2owp_A 88 VS--TEFTSDATP-LLGRQMQTWARLSPAD-GWKIVAAH 122 (129)
T ss_dssp EE--EEEEETTEE-EEEEEEEEEEECSTTT-CEEEEEEE
T ss_pred EE--EEEEECCCC-cceEEEEEEEECCCCC-CEEEEEee
Confidence 32 334443333 2344455555555 4 88887643
No 249
>3bb9_A Putative orphan protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: d.17.4.16
Probab=90.88 E-value=0.84 Score=37.90 Aligned_cols=107 Identities=12% Similarity=0.141 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHH-HHhcC-C-CCcceEEEeeeEeeeeCCCc
Q 015694 15 VGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAIND-RILSL-N-YEDYTAEIKTADAQDSYEKG 90 (402)
Q Consensus 15 vg~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~-~i~sl-~-~~~~~~~I~~~d~q~s~~~~ 90 (402)
--...+++||..|+ .+.+.|..+|.++.++...+. ...|.++|.+ .+... . +.+..+++..+...... +.
T Consensus 31 ~i~~~~~~~~~A~~~~D~~~l~~l~a~Da~~~~~~g-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~g-d~ 104 (148)
T 3bb9_A 31 AAGNVVKQFHAALQMGNEAIVRQSLAANVQIYEGGK-----VERSLTEYANHHMLADMAYLKGLTITPKEHQITITG-DI 104 (148)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEETTE-----EECSHHHHHHTHHHHHHHHHHTEEEEEEEEEEEEET-TE
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHhhCCCeEEEeCCC-----ccCCHHHHHHHhHHHHHHhccCceEEeeeEEEEEcC-CE
Confidence 45677888988888 788999999999876654432 2779999988 43321 1 12345566555544433 33
Q ss_pred EEEEEEEEEEeC--CC-cccceeEEEEe-eEcCCCcEEEEec
Q 015694 91 VIVLVTGCLTGK--DN-VKKKFTQTFFL-APQDKGGYFVLND 128 (402)
Q Consensus 91 vlv~V~G~l~~~--~~-~~r~F~qtF~L-~~~~~~~y~V~nD 128 (402)
.++.....+... +. ....+.-|++| ...+ |+|.|.+.
T Consensus 105 A~~~~~~~~~~~~~G~~~~~~~r~T~v~~~k~~-g~WkIvh~ 145 (148)
T 3bb9_A 105 AISTSISHAQGEYKGKSIDSMTMETLVLIKQAD-GRWKITHV 145 (148)
T ss_dssp EEEEEEEEEEECCC--CEEEEEEEEEEEEECTT-SCEEEEEE
T ss_pred EEEEEEEEEeeeeCCcccccceEEEEEEeEEcC-CcEEEEEE
Confidence 333333333332 11 12345667788 6665 48999764
No 250
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=90.81 E-value=0.36 Score=40.12 Aligned_cols=74 Identities=18% Similarity=0.244 Sum_probs=50.1
Q ss_pred cEEEEccCCCCCCHHHHHHHhhcCCCeeEEE-EEE---------cCCC-----CcccEEEEEeCCHHHHHHHHHhCCCcc
Q 015694 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNG-VQV---------RSNK-----QGYCFGFVAFETPGSVQSALEVLSLIS 367 (402)
Q Consensus 303 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~-v~~---------~~~~-----~~~gfgFVeF~~~~~a~~Al~~~~~~i 367 (402)
..|.|-+.|... ...+-+.|++||.|.+-. +.. .+.+ .+.+.-.|.|.+..+|++||..+|..|
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 355566776654 455677899999986521 100 0001 135677999999999999999999999
Q ss_pred CCEEEEEEEe
Q 015694 368 LSLIIKIVLG 377 (402)
Q Consensus 368 ~Gr~i~V~~~ 377 (402)
+|..|-|...
T Consensus 87 ~G~mIGV~Py 96 (132)
T 3p3d_A 87 NGVLLGVIPY 96 (132)
T ss_dssp TTEECEEEEC
T ss_pred CcEEEEEEEC
Confidence 9975555443
No 251
>3ff0_A Phenazine biosynthesis protein PHZB 2; cystatin-like fold, antibiotic biosynthesis, virulence, STRU genomics; 1.90A {Pseudomonas aeruginosa}
Probab=90.80 E-value=0.65 Score=40.14 Aligned_cols=83 Identities=12% Similarity=0.080 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHccCcccccccccCCCe---eeccCCCCccceeccHHHHHHHHhcCC--CCcceEEEeeeEeeeeCCC
Q 015694 15 VGNAFVEQYYHILHQSPGLVHRFYQDSSL---LSRPDSNGSMTTVTTMKAINDRILSLN--YEDYTAEIKTADAQDSYEK 89 (402)
Q Consensus 15 vg~~FV~~YY~~l~~~p~~L~~fY~~~S~---l~~~~~~~~~~~~~g~~~I~~~i~sl~--~~~~~~~I~~~d~q~s~~~ 89 (402)
--++-|++|+..+.++.+.++.||.++.+ +. -..|.+....|+++|.+++..+. |.+ .++..+..+.+.++
T Consensus 20 ~Nr~vV~~~l~~~~~D~~~~~~LfAeD~v~~~~e--~~~G~P~~~~Gre~l~~~~~~~~~~~~~--~~~~~~~i~~t~Dp 95 (163)
T 3ff0_A 20 KNRETVVKYMNTKGQDRLRRHELFVEDGCGGLWT--TDTGSPIVIRGKDKLAEHAVWSLKCFPD--WEWYNIKVFETDDP 95 (163)
T ss_dssp HHHHHHHHHHTCCGGGGGGGGGGEEEEEEEEESS--CSSSSCEEEESHHHHHHHHHHHHHHSTT--CEEEEEEEEEBSST
T ss_pred HHHHHHHHHHHHhcCCHHHHHHhcCCcccceeeE--ECCCCCcceecHHHHHHHHHHHHhhCCC--ceeeeEEEEEcCCC
Confidence 44678999999999999999999999987 44 22355567899999999876432 222 45666777777664
Q ss_pred -cEEEEEEEEEEe
Q 015694 90 -GVIVLVTGCLTG 101 (402)
Q Consensus 90 -~vlv~V~G~l~~ 101 (402)
.|+|-..|.-+.
T Consensus 96 d~vvvE~~~~g~i 108 (163)
T 3ff0_A 96 NHFWVECDGHGKI 108 (163)
T ss_dssp TEEEEEEEEEEEE
T ss_pred CEEEEEEEEEEEE
Confidence 455555554443
No 252
>3duk_A NTF2-like protein of unknown function; structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.20A {Methylobacillus flagellatus KT} SCOP: d.17.4.0
Probab=90.53 E-value=2.5 Score=34.36 Aligned_cols=107 Identities=14% Similarity=0.158 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhc-CCCCcceEEEeeeEeeeeCCCcEEEE
Q 015694 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILS-LNYEDYTAEIKTADAQDSYEKGVIVL 94 (402)
Q Consensus 17 ~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~s-l~~~~~~~~I~~~d~q~s~~~~vlv~ 94 (402)
.+-+..|+.-++ .+.+.|.+.|+++..+...+ +|..-.....++..+.+.+ -+.....++|.+++.. ++.-++-
T Consensus 15 ~~~l~~y~~g~~~~D~~~l~~~f~pda~~~~~~-~G~~l~~~~~~e~~~~v~~~~p~~~~~~~I~~I~i~---gd~A~a~ 90 (125)
T 3duk_A 15 TEVLNVYMNAAESGTGEEMSAAFHKDATIFGYV-GDKLAFNGPIKDLYDWHNSNGPAKNVQSRITNIDIV---GTVAHAR 90 (125)
T ss_dssp HHHHHHHHHHHHHCCHHHHGGGEEEEEEEEEEE-TTEEEEEEETHHHHHHHHHHCCCTTCEEEEEEEEEE---TTEEEEE
T ss_pred HHHHHHHHHHHHhcCHHHHHHhCCCCcEEEEEc-CCCEEeeCCHHHHHHHHhccCCCCcccceEEEEEEE---CCEEEEE
Confidence 456789999998 67889999999998775433 2331112234555555542 3444567888776664 3433333
Q ss_pred EEEEEEeCCCcccceeEEEEeeEcCCCcEEEEeceEEe
Q 015694 95 VTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRF 132 (402)
Q Consensus 95 V~G~l~~~~~~~r~F~qtF~L~~~~~~~y~V~nDifr~ 132 (402)
|.- . .-....|+-.|.|...++ +|.|.|=+|++
T Consensus 91 v~~--~--~~~~~~f~D~l~L~k~dg-~WkIv~K~~~~ 123 (125)
T 3duk_A 91 VEA--E--NWTNFKFSDLFLLLKLDG-KWTIVNKVFHL 123 (125)
T ss_dssp EEE--E--CSSSCCEEEEEEEEEETT-EEEEEEEEEEE
T ss_pred EEE--E--EcCCCeEEEEEEEEEeCC-EEEEEEEEEEe
Confidence 321 1 112368999999999886 99999999975
No 253
>3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, prote structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20
Probab=90.32 E-value=1.3 Score=36.62 Aligned_cols=96 Identities=8% Similarity=-0.033 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeeccCCCC-c--cceeccHHHHHHHHhcCC--CCcceEEEeeeEeeeeCCCc
Q 015694 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNG-S--MTTVTTMKAINDRILSLN--YEDYTAEIKTADAQDSYEKG 90 (402)
Q Consensus 17 ~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~-~--~~~~~g~~~I~~~i~sl~--~~~~~~~I~~~d~q~s~~~~ 90 (402)
+.||+.||..|+ .+.+.|..+|.++..+...|... - .....|.++|.+.+..+. +..+++++..+-+ .++.
T Consensus 7 ~~~v~~~~~a~~~gD~~~l~~l~a~Dv~~~~~g~~~~~p~~g~~~G~~av~~~~~~~~~~~~~~~~~~~~~~~---~gd~ 83 (143)
T 3dm8_A 7 WRFSRALHRALNDRQTEELATIIDDNIDWAIYGPIDMFPFFGARQGKAAVLEVCRQIADSVRIYRYHRESVML---GIDS 83 (143)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHEEEEEEEEEESCTTTCTTCEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEE---CSSE
T ss_pred HHHHHHHHHHHHCCCHHHHHHhcCCCeEEEecCCCCcCCCCccccCHHHHHHHHHHHHHhcCcceEEEEEEEE---cCCe
Confidence 789999999999 57789999999998766554321 0 125789999999887654 2344555554432 2444
Q ss_pred EEEEEEEEEEeC--CCc-ccceeEEEEe
Q 015694 91 VIVLVTGCLTGK--DNV-KKKFTQTFFL 115 (402)
Q Consensus 91 vlv~V~G~l~~~--~~~-~r~F~qtF~L 115 (402)
+.+.+.+..... +.. ...|+..|.+
T Consensus 84 v~v~~~~~~~~~~tG~~~~~~~~~~~~v 111 (143)
T 3dm8_A 84 AASMVRYSLTAAGTNRPISVRMALFTQF 111 (143)
T ss_dssp EEEEEEEEEEETTTCCEEEEEEEEEEEE
T ss_pred EEEEEEEEEEEeCCCCEEEEEEEEEEEE
Confidence 544444333322 221 2356666666
No 254
>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15
Probab=89.08 E-value=2.8 Score=32.77 Aligned_cols=104 Identities=10% Similarity=-0.004 Sum_probs=59.2
Q ss_pred HHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeEeeeeCCCcEEEEEE
Q 015694 18 AFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGVIVLVT 96 (402)
Q Consensus 18 ~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~~~~~~~I~~~d~q~s~~~~vlv~V~ 96 (402)
+..++||.-+. .+.+.|..++.++-.+...+ | ...|.+++.+.+.+-.......++..+..+...++.+++. .
T Consensus 10 ~l~~~~~~A~~~~D~~~l~~l~~~d~~~~~~~--G---~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~g~~a~~~~-~ 83 (123)
T 2r4i_A 10 DCEKKLLTAIQNNDVESLEVLLHDDLLFIIPS--G---ETVTKETDIAAYSSGKIALRAVVPSDYIIRIIHDTVVVSV-N 83 (123)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHEEEEEEEECTT--S---CEECHHHHHHHHHTTCEEEEEEEEEEEEEEEETTEEEEEE-E
T ss_pred HHHHHHHHHHHhCCHHHHHhhhCcCeEEECCC--C---CCccHHHHHHHHhcCCeEEEEEeecccEEEEECCEEEEEE-E
Confidence 44566676655 78899999999875444433 3 3567777666666543222345666677776655544443 3
Q ss_pred EEEE--eCCCc-ccceeEEEEeeEcCCCcEEEEec
Q 015694 97 GCLT--GKDNV-KKKFTQTFFLAPQDKGGYFVLND 128 (402)
Q Consensus 97 G~l~--~~~~~-~r~F~qtF~L~~~~~~~y~V~nD 128 (402)
..+. ..+.+ ...+-+|.+....++ +|.|...
T Consensus 84 ~~~~~~~~g~~~~~~~r~t~vw~r~~g-~W~iv~~ 117 (123)
T 2r4i_A 84 IEIKGEYMEHTLDNTFRYLRVWKLFDG-NWKVIAG 117 (123)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEEETT-EEEEEEE
T ss_pred EEEEEEECCcceeEEEEEEEEEEEeCC-eEEEEEE
Confidence 3332 23322 123334455555554 8888653
No 255
>3f14_A Uncharacterized NTF2-like protein; YP_680363.1, NTF2-like protein of unknown function, structur genomics; HET: MSE TRS PGE; 1.45A {Cytophaga hutchinsonii atcc 33406}
Probab=88.30 E-value=0.92 Score=35.82 Aligned_cols=90 Identities=7% Similarity=-0.040 Sum_probs=57.0
Q ss_pred HHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCC--CCcceEEEeeeEeeeeCCCcEEEE
Q 015694 18 AFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YEDYTAEIKTADAQDSYEKGVIVL 94 (402)
Q Consensus 18 ~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~--~~~~~~~I~~~d~q~s~~~~vlv~ 94 (402)
+.|+.||..|+ .+.+.|..++.++-.....|. ....|.+++.+.+..+. +.+.+++|..+=+ .++ .|.
T Consensus 4 ~~v~~~~~a~~~gD~~~~~~~ladDv~w~~~g~----~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~i~---~Gd--~Vv 74 (112)
T 3f14_A 4 TTHYSIAQHFSSGDFPAVYACFNDIIEWNIIGN----QVVKGKADVIDFCNKMLPEMKGAVLTNDNVIQ---NEN--QIV 74 (112)
T ss_dssp HHHHHHHHHHHTTCGGGTGGGEEEEEEEEETTT----EEEESHHHHHHHHHHHHHHHHTSEEEEEEEEE---CSS--EEE
T ss_pred HHHHHHHHHHHcCCHHHHHHhcCCceEEEEcCC----ccEecHHHHHHHHHHHHhhcCCcEEEEEEEEE---eCC--EEE
Confidence 57999999999 466788999998865554543 25789999988776543 1124566655322 223 456
Q ss_pred EEEEEEe--CCC--cccceeEEEEee
Q 015694 95 VTGCLTG--KDN--VKKKFTQTFFLA 116 (402)
Q Consensus 95 V~G~l~~--~~~--~~r~F~qtF~L~ 116 (402)
|.|.+.. ++. ....|+..|-+.
T Consensus 75 v~~~~~~~~~~g~~~~~~~~~vf~~~ 100 (112)
T 3f14_A 75 IEGKCRYFDAEGKEAFVSYCDIYRFE 100 (112)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred EEEEEEEEeCCCCEEEEEEEEEEEEe
Confidence 6666653 222 235677777764
No 256
>2rfr_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.16A {Novosphingobium aromaticivorans} SCOP: d.17.4.28
Probab=87.93 E-value=2.5 Score=34.89 Aligned_cols=113 Identities=5% Similarity=0.012 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCcccee-ccHHHHHHHHhcCC-----CCcceEEEeeeEeeeeC
Q 015694 15 VGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTV-TTMKAINDRILSLN-----YEDYTAEIKTADAQDSY 87 (402)
Q Consensus 15 vg~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~-~g~~~I~~~i~sl~-----~~~~~~~I~~~d~q~s~ 87 (402)
--..++..|+..++ .+.+.+..+|.++..+...+. .. .|.++|.+.+..+. +..+.|.+.++.....
T Consensus 20 ~I~~l~~~y~~a~D~~d~~~~~~lf~~Da~~~~~~g-----~~~~G~~~i~~~~~~~~~~~~~~~~~~h~~~~~~i~~~- 93 (155)
T 2rfr_A 20 EIRELIARYGPLADSGDAEALSELWVEDGEYAVVGF-----ATAKGRAAIAALIDGQTHRALMADGCAHFLGPATVTVE- 93 (155)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEETTS-----CCEESHHHHHHHHHSHHHHHHHHHCEEEEECCCEEEEE-
T ss_pred HHHHHHHHHHHHhcCCCHHHHHhhcCCceEEEcCCC-----ccccCHHHHHHHHHhccccccCCCceeEeCCCeEEEEe-
Confidence 34578999999999 577799999999988766542 34 89999999887652 2234666665444333
Q ss_pred CCcEEEEEEEEEE--eCCCcccce---eEEEEeeEcCCCcEEEEeceEEeecc
Q 015694 88 EKGVIVLVTGCLT--GKDNVKKKF---TQTFFLAPQDKGGYFVLNDVFRFVEE 135 (402)
Q Consensus 88 ~~~vlv~V~G~l~--~~~~~~r~F---~qtF~L~~~~~~~y~V~nDifr~~~~ 135 (402)
++...+.....+. ..+. ...+ ..++.|...++ +|.|.+-.++++..
T Consensus 94 gd~A~~~~~~~~~~~~~~~-~~~~~~g~y~d~~~r~~g-~Wri~~r~~~~~~~ 144 (155)
T 2rfr_A 94 GDTATARCHSVVFRCVSGT-FGSHRVSANRWTFRRTPA-GWRAVRRENALLDG 144 (155)
T ss_dssp TTEEEEEEEEEEEEEETTE-EEEEEEEEEEEEEEEETT-EEEEEEEEEEESSS
T ss_pred CCEEEEEEEEEEEEEcCCC-ceEEEeeeeEEEEEECCC-EEEEEEEEEEecCC
Confidence 3333332222222 1221 1111 12356666654 89999977776543
No 257
>3mg1_A OCP, orange carotenoid protein; carotenoid binding protein, echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis SP} PDB: 3mg2_A* 3mg3_A* 1m98_A*
Probab=87.15 E-value=2.4 Score=40.08 Aligned_cols=110 Identities=18% Similarity=0.189 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeEeeeeCCCcEEE
Q 015694 15 VGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGVIV 93 (402)
Q Consensus 15 vg~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~~~~~~~I~~~d~q~s~~~~vlv 93 (402)
|-+.=|.+|+..|| .+-+.+..+|.++..|-=+=. ....|+++|..++..-- ++.+.+...--+.+.-+|+.-+
T Consensus 193 i~~~tVl~Y~e~lNa~Df~a~aaLFA~Dg~LepPf~----~PIvGreAI~~y~~~ea-q~~~l~P~~g~~ep~e~g~~qi 267 (323)
T 3mg1_A 193 VTNATVLNYMDNLNANDFDTLIELFTSDGALQPPFQ----RPIVGKENVLRFFREEC-QNLKLIPERGVTEPAEDGFTQI 267 (323)
T ss_dssp BCCHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTS----CCEESHHHHHHHHHHHC-TTCEEEEEEEEEEECGGGCEEE
T ss_pred cchHHHHHHHHHhcccCHHHHHHHccCCCeeCCCCC----CCccCHHHHHHHHHHHh-ccCEEeeccCccccccCCCceE
Confidence 55777999999999 678899999999998863322 16999999999986422 2356777776777887888999
Q ss_pred EEEEEEEeCC---CcccceeEEEEeeEcCCCcEEEEeceE
Q 015694 94 LVTGCLTGKD---NVKKKFTQTFFLAPQDKGGYFVLNDVF 130 (402)
Q Consensus 94 ~V~G~l~~~~---~~~r~F~qtF~L~~~~~~~y~V~nDif 130 (402)
.|+|.++..= +....-.=.|.|-++++ -|+|.=|.+
T Consensus 268 ~vtGkVqTpwfGv~v~mnVaW~F~lN~~gk-I~~v~i~LL 306 (323)
T 3mg1_A 268 KVTGKVQTPWFGGNVGMNIAWRFLLNPEGK-IFFVAIDLL 306 (323)
T ss_dssp EEEEEEECTTTGGGCCEEEEEEEEECTTSC-EEEEEEEEB
T ss_pred EEEEEEEcccCCccccccceeEEEECCCCc-EEEEEehhh
Confidence 9999998643 23345677888977776 677776665
No 258
>3b8l_A Uncharacterized protein; putative aromatic ring hydroxylase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.75A {Novosphingobium aromaticivorans} SCOP: d.17.4.28
Probab=87.04 E-value=4.1 Score=34.03 Aligned_cols=120 Identities=12% Similarity=0.113 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHcc--CcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcC--CCCcceEEEeeeEeeeeCC
Q 015694 13 QVVGNAFVEQYYHILHQ--SPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL--NYEDYTAEIKTADAQDSYE 88 (402)
Q Consensus 13 ~~vg~~FV~~YY~~l~~--~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl--~~~~~~~~I~~~d~q~s~~ 88 (402)
..--..|+..|+..|+. +.+.+..+|.++..+...+. | .....|.++|.+.+... ++..+.+.+.++......+
T Consensus 27 ~~~I~~l~~~y~~alD~~~D~d~~~~lfteDa~~~~~~~-g-~~~~~G~~~i~~~~~~~~~~~~~~~h~~~~~~I~~~~g 104 (163)
T 3b8l_A 27 RLAIQDLMIAYAHAVDTVSDIDAVLDVFTEDAVFDLSGI-G-LTPQVGHAGIREFFTNVFANMSHHAHYLTNFAVTGYEG 104 (163)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHTTEEEEEEEECGGG-T-CCCEEHHHHHHHHHHHHHHHEEEEEEEEEEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHCcCCCHHHHHhhcCCCEEEEecCC-C-CCCccCHHHHHHHHHHhhccCCceEEEecCEEEEEeCC
Confidence 34557899999999996 66789999999987765321 1 12478999999887643 2233456666555442223
Q ss_pred CcEEEEEEEEE--EeCCCccc--ceeEEEEeeEcCCCcEEEEeceEEeecc
Q 015694 89 KGVIVLVTGCL--TGKDNVKK--KFTQTFFLAPQDKGGYFVLNDVFRFVEE 135 (402)
Q Consensus 89 ~~vlv~V~G~l--~~~~~~~r--~F~qtF~L~~~~~~~y~V~nDifr~~~~ 135 (402)
+...+.....+ ...+.... .-.-++.|...++ +|.|..-.+++.-.
T Consensus 105 d~A~~~~~~~~~~~~~~g~~~~~~g~y~d~~~r~dg-~WrI~~r~~~~~~~ 154 (163)
T 3b8l_A 105 DTASMRAYVIGMGVGKDGRAVTVNGRYFFEVRRTEK-GWKATRYTMDFLMP 154 (163)
T ss_dssp SEEEEEEEEEEEEEETTSCEEEEEEEEEEEEEEETT-EEEEEEEEEEESSC
T ss_pred CEEEEEEEEEEEEEcCCCCeEEEEEEEEEEEEEeCC-EEEEEEEEEEEEec
Confidence 43333332222 11211211 1223446666654 89999987776543
No 259
>3h3h_A Uncharacterized snoal-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE UNL MES; 1.60A {Burkholderia thailandensis E264}
Probab=86.70 E-value=0.77 Score=36.71 Aligned_cols=65 Identities=11% Similarity=0.131 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHc-cCcccccccccCCCeeecc------CCCCccceeccHHHHHHHHhcCC--CCcceEEEeee
Q 015694 15 VGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRP------DSNGSMTTVTTMKAINDRILSLN--YEDYTAEIKTA 81 (402)
Q Consensus 15 vg~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~------~~~~~~~~~~g~~~I~~~i~sl~--~~~~~~~I~~~ 81 (402)
-.+.+++.||..++ .+.+.|..+|.++..+... +..+ ....|.++|.+.+..+- +.++++++..+
T Consensus 9 ~~~~~~~~~~~a~n~~D~~~l~~l~a~D~v~~~p~~~~~~g~~~--~~~~G~~ai~~~~~~~~~~~~~~~~~~~~~ 82 (122)
T 3h3h_A 9 FAQQFSREWIDAWNAHDLDAILSHYADGFEMSSPMIVQIAGEPS--GRLRGKEQVGAYWREALRMIPDLHFEWIAT 82 (122)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECHHHHHHHC-CC--CEEEHHHHHHHHHHHHHHHCTTCCCEEEEE
T ss_pred HHHHHHHHHHHHHhccCHHHHHHhcCCCEEEECCCcccccCCCC--CcEEcHHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 35789999999998 6788999999999988643 1000 15889999999886431 33566777554
No 260
>3er7_A Uncharacterized NTF2-like protein; YP_001812677.1, NTF2-like protein of unknown function, struc genomics; HET: MSE; 1.50A {Exiguobacterium sibiricum 255-15} SCOP: d.17.4.24
Probab=86.18 E-value=0.47 Score=39.37 Aligned_cols=58 Identities=7% Similarity=0.130 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcc------CcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcC--CCCcceEEEee
Q 015694 18 AFVEQYYHILHQ------SPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL--NYEDYTAEIKT 80 (402)
Q Consensus 18 ~FV~~YY~~l~~------~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl--~~~~~~~~I~~ 80 (402)
.=|++||..++. +.+.|..||.++.++...+. ...|.++|.+.+..+ .+.++++.+..
T Consensus 6 ~~v~ry~~~~d~~~~d~~d~~~l~~Lfa~Dav~~~~~~-----~~~G~~ai~~F~~~~~~a~~~~~~~~~~ 71 (131)
T 3er7_A 6 TTLDRYFDLFDASRTDEKAFDDLISLFSDEITFVLNGQ-----EQHGIDAWKQFVRMVFTANQDIKHMYAG 71 (131)
T ss_dssp CHHHHHHHHHHHTTTCHHHHHHHHHTEEEEEEEEETTE-----EEESHHHHHHHHHHHHHHEEEEEEEECC
T ss_pred HHHHHHHHHHhhccCCccCHHHHHHHhCCCeEecCCCC-----CcCChHHHHHHHHHHHhhCcCceEEEEE
Confidence 348999999983 26788899999998832222 578999999988754 23455555554
No 261
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=86.14 E-value=0.67 Score=36.47 Aligned_cols=66 Identities=15% Similarity=0.184 Sum_probs=43.9
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCC---CcccEEEEEeCCHHHHHHHHHhC-CCcc
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK---QGYCFGFVAFETPGSVQSALEVL-SLIS 367 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~---~~~gfgFVeF~~~~~a~~Al~~~-~~~i 367 (402)
+-+|-|+.||..+|++++.+.++.+=.+........+.+ ...+-|||.|.+.+++..-.+.. |..+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 568999999999999987776665433322111111111 23466899999999988877776 5544
No 262
>3gzb_A Putative snoal-like polyketide cyclase; YP_001182657.1, STRU genomics, joint center for structural genomics, JCSG; HET: MSE; 1.44A {Shewanella putrefaciens} PDB: 3lza_A*
Probab=85.26 E-value=1.3 Score=36.55 Aligned_cols=79 Identities=20% Similarity=0.284 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcc-CcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCC--CCcceEEEeeeEeeeeCCCcEEE
Q 015694 17 NAFVEQYYHILHQ-SPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YEDYTAEIKTADAQDSYEKGVIV 93 (402)
Q Consensus 17 ~~FV~~YY~~l~~-~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~--~~~~~~~I~~~d~q~s~~~~vlv 93 (402)
..|.-.|-..|-. +...|.+||..+|++.-...+ ...+|...|...|...- .-.....|++ .++.|-||
T Consensus 23 qqlA~~Yi~AlT~hDy~~L~~FynrdsVf~D~ta~---~~YtG~r~Ii~Fl~RaH~gvLey~fnieH-----mfnsGsLV 94 (154)
T 3gzb_A 23 QQLAVKYMDALTEHDYKTLITFYNRDSIFFDKTAN---RKYTGGRFIIDFLERAHQGVLEYDFNIEH-----MYNAGSLV 94 (154)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTCCTTCEEEETTTT---EEEESHHHHHHHHHHHTTTCCCCEEEEEE-----EEEETTEE
T ss_pred HHHHHHHHHHHhccCHHHHHHHhCccceeeeeccC---cceeCcHHHHHHHHHHhhhheeeccChhh-----hccCCcEE
Confidence 3456678888874 889999999999999754432 16899999999886432 1122344544 34556677
Q ss_pred EEEEEEEeCC
Q 015694 94 LVTGCLTGKD 103 (402)
Q Consensus 94 ~V~G~l~~~~ 103 (402)
+..|.-..++
T Consensus 95 VmiGnY~~kG 104 (154)
T 3gzb_A 95 VMIGNYHFKG 104 (154)
T ss_dssp EEEEEEEEEE
T ss_pred EEEcceeecC
Confidence 7888865544
No 263
>3cnx_A Uncharacterized protein; putative dehydratase, NTF2-like protein, structural genomics center for structural genomics, JCSG; HET: MSE PGE PG6; 2.10A {Streptomyces avermitilis} SCOP: d.17.4.17
Probab=85.09 E-value=4.9 Score=34.71 Aligned_cols=110 Identities=7% Similarity=0.030 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCC-----------------eeeccCCCCccceeccHHHHHHHHhcC--CCCcceE
Q 015694 17 NAFVEQYYHILH-QSPGLVHRFYQDSS-----------------LLSRPDSNGSMTTVTTMKAINDRILSL--NYEDYTA 76 (402)
Q Consensus 17 ~~FV~~YY~~l~-~~p~~L~~fY~~~S-----------------~l~~~~~~~~~~~~~g~~~I~~~i~sl--~~~~~~~ 76 (402)
......||..|+ .+.+.|..+|.++. ++.+.+. ....|.++|.+.+..+ .....++
T Consensus 15 ~~~~~~~~~A~~~gD~~~l~alwa~d~~~~~~~~~~~~~~~~~v~~v~Pg~----~~l~G~~~I~~~~~~~f~~~~~~~~ 90 (170)
T 3cnx_A 15 GLANTAFYEAMERGDFETLSSLWLTPADLGVDEEYHDPADAGVVSCVHPGW----PVLSGRGEVLRSYALIMANTEYIQF 90 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHBCCHHHHTC------CCCTTCCEEECTTC----CEEEHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHhhcCCcccccccccccccccccEEEEcCCC----ccccCHHHHHHHHHHHHccCCeeEE
Confidence 356677777777 78889999999763 3334432 1588999999776422 1111344
Q ss_pred EEeeeEeeeeCCCcEEEEEEEEEEeCC---------Ccc--cceeEEEEeeEcCCCcEEEEeceEEe
Q 015694 77 EIKTADAQDSYEKGVIVLVTGCLTGKD---------NVK--KKFTQTFFLAPQDKGGYFVLNDVFRF 132 (402)
Q Consensus 77 ~I~~~d~q~s~~~~vlv~V~G~l~~~~---------~~~--r~F~qtF~L~~~~~~~y~V~nDifr~ 132 (402)
++..+....+ ++..++.+...+.... .+. +++.-|+++...++ +|.|.++=...
T Consensus 91 ~~~dv~v~~~-gD~A~v~~~~~~~~~~~~~~g~~~~g~~~~~~~raT~Vfrr~~g-gWriv~hH~Sp 155 (170)
T 3cnx_A 91 FLTDVHVSVT-GDTALVTCTENILSGGPPPDDSDELGPLVGQLVVATNVFRRTPD-GWKLWSHHASP 155 (170)
T ss_dssp EEEEEEEEEE-TTEEEEEEEEEEEEEC---------CCCEEEEEEEEEEEECCTT-CCEEEEEEEEE
T ss_pred EEEEEEEEEe-CCEEEEEEEEEEeccCCccccccccCccccceEEEEEEEEEECC-EEEEEEEecCC
Confidence 4545554433 3334455555555311 122 22556777777775 78887755443
No 264
>2chc_A Protein RV3472; hypothetical protein; 1.69A {Mycobacterium tuberculosis} SCOP: d.17.4.25
Probab=84.67 E-value=5.6 Score=33.41 Aligned_cols=112 Identities=10% Similarity=-0.067 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCCC-CcceEEEeeeEeeeeCCCcEE
Q 015694 15 VGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNY-EDYTAEIKTADAQDSYEKGVI 92 (402)
Q Consensus 15 vg~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~-~~~~~~I~~~d~q~s~~~~vl 92 (402)
--..++..|+..++ .+.+.+..+|.++..+...+. ...|.++|.+.+...-- ..+.|.|.++..... ++...
T Consensus 15 ~I~~l~~~y~~a~D~~D~~~~~~lf~~Da~~~~~g~-----~~~G~~~i~~~~~~~~~~~~~~h~~~~~~i~~~-gd~A~ 88 (170)
T 2chc_A 15 RIQALCARYCLTINTQDGEGWAGCFTEDGAFEFDGW-----VIRGRPALREYADAHARVVRGRHLTTDLLYEVD-GDVAT 88 (170)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHTTEEEEEEEEETTE-----EEESHHHHHHHHHHHHHHCCCCEEEEEEEEEEE-TTEEE
T ss_pred HHHHHHHHHHHHHcCCCHHHHHhcccCcEEEEeCCC-----CcCCHHHHHHHHHHhhcccceEEecCCeEEEEe-CCEEE
Confidence 34679999999999 567789999999988766543 57899999987765311 234566665554433 23332
Q ss_pred EEEEEE--EEeCCCccc--ceeEEEEeeEcCCCcEEEEeceEEee
Q 015694 93 VLVTGC--LTGKDNVKK--KFTQTFFLAPQDKGGYFVLNDVFRFV 133 (402)
Q Consensus 93 v~V~G~--l~~~~~~~r--~F~qtF~L~~~~~~~y~V~nDifr~~ 133 (402)
+..... +...+.... .-.-+.+|...+ |+|.|..-.+.+.
T Consensus 89 ~~~~~~~~~~~~~g~~~~~~g~y~d~~~r~d-g~Wri~~r~~~~~ 132 (170)
T 2chc_A 89 GRSASVVTLATAAGYKILGSGEYQDRLIKQD-GQWRIAYRRLRND 132 (170)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEEEEET-TEEEEEEEEEEEC
T ss_pred EEEEEEEEEEcCCCCEEEEEEEEEEEEEEEC-CEEEEEEEEEEEe
Confidence 222221 122222211 112233455555 4899998777654
No 265
>1nww_A Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {Rhodococcus erythropolis} SCOP: d.17.4.8 PDB: 1nu3_A*
Probab=84.39 E-value=8.1 Score=31.36 Aligned_cols=51 Identities=8% Similarity=0.201 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcc-CcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCC
Q 015694 16 GNAFVEQYYHILHQ-SPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN 70 (402)
Q Consensus 16 g~~FV~~YY~~l~~-~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~ 70 (402)
..+.|+.||..+++ +.+.|..||.++..+...+. ....|.++|.+.+..+.
T Consensus 24 ~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~~~~----~~~~G~~~i~~~~~~~~ 75 (149)
T 1nww_A 24 DEKIVLEFMDALTSNDAAKLIEYFAEDTMYQNMPL----PPAYGRDAVEQTLAGLF 75 (149)
T ss_dssp HHHHHHHHHHHGGGCCHHHHHTTBCSSCEEEETTS----CCEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHhCCCEEEEcCCC----CCccCHHHHHHHHHHHH
Confidence 46788999999884 66799999999998876543 14789999999887553
No 266
>3fsd_A NTF2-like protein of unknown function in nutrient; YP_427473.1, NTF2-like protein of unknown function in nutrie uptake; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170} SCOP: d.17.4.0
Probab=84.39 E-value=6 Score=31.96 Aligned_cols=106 Identities=11% Similarity=0.079 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeEeeeeCCCcEEEEE
Q 015694 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGVIVLV 95 (402)
Q Consensus 17 ~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~~~~~~~I~~~d~q~s~~~~vlv~V 95 (402)
.+..++|+.-|. .+.+.|..+|.++-.+.+.+ |. ..+.++..+.+.+-...-...++.....+...++..++..
T Consensus 17 ~~l~~~~~~A~~~~D~~~l~~L~~~d~~~v~~~--G~---~~~~~~~l~~~~~g~~~~~~~~~~~~~v~~~g~d~Avv~~ 91 (134)
T 3fsd_A 17 AFYEERLRAAMLTGDLKGLETLLADDLAFVDHT--GC---VKTKQTHLEPYRAGLLKLSRLDLSDAVVRAAGEDGRVVVV 91 (134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHEEEEEEEECTT--SC---EECHHHHHHHHHTTCEEEEEEEEEEEEEEESSTTEEEEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHhhcCCCEEEECCC--Cc---CccHHHHHHHHHcCCceEEEEEEeccEEEEeCCCEEEEEE
Confidence 344556666554 89999999999986655432 32 3344444445543221112445555666665554444433
Q ss_pred EEEEEe--CCCcc-cceeEEEEeeEcCCCc--EEEEec
Q 015694 96 TGCLTG--KDNVK-KKFTQTFFLAPQDKGG--YFVLND 128 (402)
Q Consensus 96 ~G~l~~--~~~~~-r~F~qtF~L~~~~~~~--y~V~nD 128 (402)
.-.+.. .+.+. ..+.+|-+....++ + |-|...
T Consensus 92 ~~~~~~~~~g~~~~~~~~~t~vw~k~~g-~~gWriv~~ 128 (134)
T 3fsd_A 92 RAVTAGVYDGEAFTETLRFTRIWRRTQG-PAGWKLVAG 128 (134)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEEEEETT-TTEEEEEEE
T ss_pred EEEEEEEeCCcEEEEEEEEEEEEEECCC-CccceEeEe
Confidence 333322 23221 22333444445555 6 988653
No 267
>3blz_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.75A {Shewanella baltica} SCOP: d.17.4.14
Probab=84.32 E-value=13 Score=29.77 Aligned_cols=110 Identities=12% Similarity=0.108 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcC--CCCcceEEEeeeEeeeeCCCcEE
Q 015694 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL--NYEDYTAEIKTADAQDSYEKGVI 92 (402)
Q Consensus 16 g~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl--~~~~~~~~I~~~d~q~s~~~~vl 92 (402)
=.+-+..|+.-++ .+.+.|.+.|+++..+.....+|.. .....++-.+.+.+- +.....+.|.+++.. ++.-+
T Consensus 14 I~~~~~~y~~a~~~~D~~~l~~~f~~da~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~i~---gd~A~ 89 (128)
T 3blz_A 14 IVEVLSKYNEGGKKADSTIMRPAFSSQATIFGVDVDNKL-TGGPIQGLFDVIDNVFHPSPEAKAAIARIDIV---GTAAS 89 (128)
T ss_dssp HHHHHHHHHHHHHHTCHHHHGGGEEEEEEEEEECTTSCE-EEEETHHHHHHHHHTCCCCTTCEEEEEEEEEE---TTEEE
T ss_pred HHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEEEeCCCcE-EecCHHHHHHHHHhcCCCCccccCeEEEEEEE---CCEEE
Confidence 3566889999999 6788999999998877543212221 123345555555443 333445556544432 34444
Q ss_pred EEEEEEEEeCCCcccceeEEEEeeEcCCCcEEEEeceEEeec
Q 015694 93 VLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRFVE 134 (402)
Q Consensus 93 v~V~G~l~~~~~~~r~F~qtF~L~~~~~~~y~V~nDifr~~~ 134 (402)
+.+... .. ...+|...|.|...++ +|.|.+-+|+...
T Consensus 90 a~~~~~-~~---~~~~~~d~~~l~k~dg-~WkI~~~~~~~~~ 126 (128)
T 3blz_A 90 ARIDTD-DI---SGFRFTDFFNLLKVEG-KWTVVSKIYHTHP 126 (128)
T ss_dssp EEEEEE-EE---TTEEEEEEEEEEEETT-EEEEEEEEEEECC
T ss_pred EEEEEE-Ec---CCCceEEeEEEEEECC-EEEEEEEEEEecc
Confidence 444432 12 1356888888888776 8999999997653
No 268
>3a76_A Gamma-hexachlorocyclohexane dehydrochlorinase; barrel fold, lyase, detoxification; HET: SPD; 2.25A {Sphingomonas paucimobilis}
Probab=84.27 E-value=4.9 Score=34.35 Aligned_cols=114 Identities=9% Similarity=-0.104 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHH-hcC--CCCcceEEEeeeEeeeeCCCc
Q 015694 15 VGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRI-LSL--NYEDYTAEIKTADAQDSYEKG 90 (402)
Q Consensus 15 vg~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i-~sl--~~~~~~~~I~~~d~q~s~~~~ 90 (402)
--..|+..|...|+ .+.+.+..+|.++..+.+.+. | ...|.++|.+.+ ... ++..+.+.|.++......++.
T Consensus 32 ~I~~ll~ry~~alD~~d~d~~~~lfteDa~~~~~~~-g---~~~G~~~i~~~~~~~~~~~~~~t~H~i~n~~I~~~g~d~ 107 (176)
T 3a76_A 32 AIQDLYSDKLIAVDKRQEGRLASIWWDDAEWTIEGI-G---TYKGPEGALDLANNVLWPMFHECIHYGTNLRLEFVSADK 107 (176)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEETTT-E---EEEHHHHHHHHHHHTHHHHEEEEEEEEEEEEEEESSSSE
T ss_pred HHHHHHHHHHHHhcCCCHHHHHhhccCCeEEEcCCC-c---cccCHHHHHHHHHHhhhcccCceEEecCCeEEEEcCCCe
Confidence 44689999999999 566789999999988755431 1 478999999988 442 344556777665544332243
Q ss_pred EEEEEEEEEE--eCCCc-ccce--eEEEEeeEcCCCcEEEEeceEEee
Q 015694 91 VIVLVTGCLT--GKDNV-KKKF--TQTFFLAPQDKGGYFVLNDVFRFV 133 (402)
Q Consensus 91 vlv~V~G~l~--~~~~~-~r~F--~qtF~L~~~~~~~y~V~nDifr~~ 133 (402)
..+.....+. ..... ...+ .-+..|...++ +|.|..-.+++.
T Consensus 108 A~~~~~~~~~~~~~~~~~~~~~~gry~d~l~r~dg-~WrI~~r~~~~~ 154 (176)
T 3a76_A 108 VNGIGDVLLLGNLVEGNQSILIAAVFTDEYERRDG-VWKFSKRNACTN 154 (176)
T ss_dssp EEEEEEEEEEEEETGGGEEEEEEEEEEEEEEEETT-EEEEEEEEEEEE
T ss_pred EEEEEEEEEEEEecCCCceEEEEEEEEEEEEEECC-EEEEEEEEEEEE
Confidence 3332212221 12111 1111 11234555554 899999877654
No 269
>3fka_A Uncharacterized NTF-2 like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.69A {Silicibacter pomeroyi dss-3}
Probab=83.70 E-value=3.9 Score=32.85 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCCC---CcceEEEeeeEeeeeCCCcEE
Q 015694 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNY---EDYTAEIKTADAQDSYEKGVI 92 (402)
Q Consensus 17 ~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~---~~~~~~I~~~d~q~s~~~~vl 92 (402)
.+-+..|+.-++ .+.+.|.+-|++++.+.+.+ +|... ....++-.+ +..-|. .....+|.++|.. ++.-+
T Consensus 12 ~~~l~~Y~~g~~~~D~~~l~~~FhpdA~~~~~~-~g~~~-~~~~~~~~~-v~~~p~~~~~~~~~~i~~I~i~---gd~A~ 85 (120)
T 3fka_A 12 TALVETYVMAMTRGDRPALERIFFGKASEVGHY-EGELL-WNSRDAFIA-MCEDAADAETDPFWAISSVSVQ---GDIAM 85 (120)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHEEEEEEEEEEE-TTEEE-EEEHHHHHH-HHHHHCCSSCCCCEEEEEEEEE---TTEEE
T ss_pred HHHHHHHHHHHHhcCHHHHHhhCCCCeEEEEec-CCcEE-EcCHHHHHh-hcCCccCCCCCceEEEEEEEEE---CCEEE
Confidence 345889999999 67789999999998775433 23322 223333334 432121 1234567776653 24444
Q ss_pred EEEEEEEEeCCCcccceeEEEEeeEcCCCcEEEEeceEEe
Q 015694 93 VLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRF 132 (402)
Q Consensus 93 v~V~G~l~~~~~~~r~F~qtF~L~~~~~~~y~V~nDifr~ 132 (402)
+.|. +.. ..+.|+..|.|...++ +|.|.|=+|++
T Consensus 86 a~v~--~~~---~~~~f~D~~~L~k~dg-~WkIv~K~~~~ 119 (120)
T 3fka_A 86 LHVE--NDW---AGMRFDDFLTVLLHEG-SWRIVSKVYRI 119 (120)
T ss_dssp EEEE--EEE---TTEEEEEEEEEEEETT-EEEEEEEEEEE
T ss_pred EEEE--EEc---CCCceEEEEEEEEeCC-EEEEEEEEEEc
Confidence 4444 222 3467999999999886 99999999986
No 270
>3dxo_A Uncharacterized snoal-like protein; putative isomerase of the snoal-like family; HET: MSE PGE; 2.70A {Agrobacterium tumefaciens str} SCOP: d.17.4.19
Probab=83.06 E-value=6.9 Score=31.14 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHccC-----cccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCC--CCcceEEEe-eeEeee
Q 015694 17 NAFVEQYYHILHQS-----PGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YEDYTAEIK-TADAQD 85 (402)
Q Consensus 17 ~~FV~~YY~~l~~~-----p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~--~~~~~~~I~-~~d~q~ 85 (402)
+.+|++|+..++.. .+.|..+|.++..+.-+.. .+.|.++|...|..+- +.+++..+. .++.+.
T Consensus 6 ~~~v~ry~~aw~~~d~~~~~~~l~~l~a~D~~~~dP~~-----~~~G~~ai~~~~~~~~~~~~~~~f~~~~~~~~~~ 77 (121)
T 3dxo_A 6 LTIAQTYLAAWNEEDNERRRHLVGQAWAENTRYVDPLM-----QGEGQQGIAAMIEAARQKFPGYRFVLAGTPDGHG 77 (121)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHEEEEEEEECSSC-----EEEHHHHHHHHHHHHHHHSTTCEEEEEEEEEEET
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhcCCCeEEECCCC-----CcCCHHHHHHHHHHHHHHCCCcEEEEccCcceeC
Confidence 56788888888742 2469999999998886654 5899999999886432 457888887 666654
No 271
>4h3u_A Hypothetical protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.15A {Catenulispora acidiphila}
Probab=82.90 E-value=6.2 Score=32.78 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=43.6
Q ss_pred HHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCC--CCcceEEEee
Q 015694 18 AFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YEDYTAEIKT 80 (402)
Q Consensus 18 ~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~--~~~~~~~I~~ 80 (402)
+.|+.||..++ .+.+.|..||.++..+.-... | ....|.++|.+.+..+. +.+++..|..
T Consensus 29 eiv~~y~~A~n~~D~d~~~~l~a~D~v~~d~~~-g--~~~~Greai~~~~~~~~~~~~d~~~~v~~ 91 (158)
T 4h3u_A 29 EIVTAWAAAWTGTNPNALGTLFAADGTYVDHAI-G--ATMTGREQISGWKARTDAMIENVHVTITK 91 (158)
T ss_dssp HHHHHHHHHHHSSCHHHHHTTEEEEEEEEETTT-T--EEEESHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCHHHHHHHhcccceEeccCC-C--ceEecchhhhhhhhhhhccCCccceeEeE
Confidence 57889999998 688899999999987764332 1 15789999999887653 3345555544
No 272
>3en8_A Uncharacterized NTF-2 like protein; YP_553245.1, NTF-2 like protein of unknown function, structu genomics; HET: MSE PG4; 1.85A {Burkholderia xenovorans LB400} SCOP: d.17.4.20
Probab=82.24 E-value=4.6 Score=32.66 Aligned_cols=78 Identities=9% Similarity=0.044 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeEeeeeCCCcEEEE
Q 015694 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGVIVL 94 (402)
Q Consensus 16 g~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~~~~~~~I~~~d~q~s~~~~vlv~ 94 (402)
-++-|+.||..|+ .+.+.|..||.++..+.++... ....|.++|.+.+...+-.....+|..+- .+|. .+.
T Consensus 7 ~~~~v~~~~~a~~~~D~~~l~~llaeD~v~~~P~~~---~~~~Gr~~~~~~~~~~~~~~~~~~i~~~~----a~G~-~vv 78 (128)
T 3en8_A 7 IREALNAHWQASAAGDFDAEHDIYDDDAICDYPQSG---ERILGRMNLQALRSHHPGKPAGFEVRRIQ----GEGN-LWI 78 (128)
T ss_dssp HHHHHHHHHHHHHHTCHHHHTTTEEEEEEEEETTTT---EEEESHHHHHHHHHHTTCSCSEEEEEEEE----EETT-EEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCEEEECCCCC---CEEECHHHHHHHHHHCCCCCcceEEEEEE----ECCC-EEE
Confidence 4678999999998 5788999999999998876431 25789999999887766322125554431 1222 345
Q ss_pred EEEEEEe
Q 015694 95 VTGCLTG 101 (402)
Q Consensus 95 V~G~l~~ 101 (402)
+...++.
T Consensus 79 ~~~~~~~ 85 (128)
T 3en8_A 79 TEYSISY 85 (128)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 5555554
No 273
>3fh1_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=81.57 E-value=6 Score=31.56 Aligned_cols=69 Identities=3% Similarity=0.088 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCC-CCcceEEEeee
Q 015694 13 QVVGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN-YEDYTAEIKTA 81 (402)
Q Consensus 13 ~~vg~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~-~~~~~~~I~~~ 81 (402)
.+-..+.|+.||..++ .+.+.|..+|.++..+...+....-....|.++|.+.+..+. +.+++++|..+
T Consensus 16 ~~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~p~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~i~~~ 86 (129)
T 3fh1_A 16 SEQTAEIMRRFNDVFQLHDPAALPELIAEECVIENTVPAPDGARHAGRQACVQLWSAIATQPGTRFDLEET 86 (129)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHEEEEEEEECSCSTTTCCEEESHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHhcCCCEEEECCCCCCCCCcccCHHHHHHHHHHHhcCCCceEEEeEE
Confidence 3456789999999998 677899999999988876541111114689999998886521 33556666543
No 274
>1ohp_A Steroid delta-isomerase; inhibitor; HET: ESR; 1.53A {Pseudomonas testosteroni} SCOP: d.17.4.3 PDB: 1qjg_A* 8cho_A* 1ohs_A* 1ocv_A 1isk_A 3nuv_A* 1ogz_A* 3nhx_A* 3m8c_A* 3nxj_A* 3myt_A* 3mki_A 3mhe_A 1buq_A* 3nbr_A* 3t8u_A 3ov4_A* 3nm2_A
Probab=81.36 E-value=4.9 Score=31.04 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCC
Q 015694 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN 70 (402)
Q Consensus 16 g~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~ 70 (402)
....|+.||..++ .+.+.|..+|.++..+...... ....|.++|.+.+..+-
T Consensus 7 ~~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~~~~~---~~~~G~~~i~~~~~~~~ 59 (125)
T 1ohp_A 7 MTAVVQRYVAALNAGDLDGIVALFADDATVENPVGS---EPRSGTAAIREFYANSL 59 (125)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHTTEEEEEEEESSTTS---CCEESHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHcCCCeEEECCCCC---CCccCHHHHHHHHHHhc
Confidence 4678999999998 5778999999999877654211 15889999999887653
No 275
>3ff2_A Uncharacterized cystatin fold protein (YP_497570. NTF2 superfamily; structural genomics; 1.90A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=81.05 E-value=2.7 Score=33.07 Aligned_cols=62 Identities=11% Similarity=0.039 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCC--CCcceEEEeee
Q 015694 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YEDYTAEIKTA 81 (402)
Q Consensus 17 ~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~--~~~~~~~I~~~ 81 (402)
.+.|+.||..++ .+.+.+..||.++........ .....|.++|.+.+..+- +.+.+++|..+
T Consensus 5 ~~~v~~~~~a~n~~D~~~~~~~~a~D~v~h~~~~---~~~~~G~~~~~~~~~~~~~~~p~~~~~i~~~ 69 (117)
T 3ff2_A 5 LETAKAMIAAYNAQDVDTYVSYMTDDACEANYRG---DVVREGKEGTRSGLAAAFARWPQNHAEIKDA 69 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEETTS---CEEECHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred HHHHHHHHHHHcccCHHHHHHhcCCcEEEEeCCC---CccccCHHHHHHHHHHHHhhCCCceEEEEEE
Confidence 467999999998 567789999998875544321 125789999998875431 22455666543
No 276
>3hk4_A MLR7391 protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, lyase; HET: MSE; 1.96A {Mesorhizobium loti}
Probab=80.74 E-value=7 Score=32.18 Aligned_cols=97 Identities=10% Similarity=0.085 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHccCc--ccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCC--CCcceEEEeeeEeeeeCCCcEE
Q 015694 17 NAFVEQYYHILHQSP--GLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YEDYTAEIKTADAQDSYEKGVI 92 (402)
Q Consensus 17 ~~FV~~YY~~l~~~p--~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~--~~~~~~~I~~~d~q~s~~~~vl 92 (402)
++-|+.||..+++.. +.|..||.++.++.-+.. .......|.++|.+++..+. +..+..+|..+ -..++.+.
T Consensus 23 kevv~r~~e~~~~gd~~~~l~~lya~D~v~~dp~~-~~~~~~~G~eai~~~~~~~~~~~~~~~~~i~~~---~v~gd~v~ 98 (136)
T 3hk4_A 23 AEIAKDFTELLKQGDNAGAAEKYNADDIASYEAME-GPMAVSHGKEALRQKSQWWQENHEVHGGSVEGP---YVNGDQFA 98 (136)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHEEEEEEEECSSC-STTSEEESHHHHHHHHHHHHHTEEEEEEEEEEE---EEETTEEE
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHCCCCEEEEcCCC-CCccccCCHHHHHHHHHHHHhcCCeeeeeecce---EEcCCEEE
Confidence 456777888888664 358999999998876532 11125789999999876443 22233333322 22245455
Q ss_pred EEEEEEEEeC-CCcccceeEEEEeeE
Q 015694 93 VLVTGCLTGK-DNVKKKFTQTFFLAP 117 (402)
Q Consensus 93 v~V~G~l~~~-~~~~r~F~qtF~L~~ 117 (402)
+.-+...+.. +..+..+...-++.=
T Consensus 99 v~~~~~gth~~tG~~i~~~~i~v~rv 124 (136)
T 3hk4_A 99 LRFKFDVTPKATGERVTMDEVGLYTV 124 (136)
T ss_dssp EEEEEEEEETTTCCCEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCcEEEEEEEEEEEE
Confidence 5544444544 334444555545443
No 277
>3k0z_A Putative polyketide cyclase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS lipoprotein; HET: NHE; 1.91A {Bacillus cereus}
Probab=80.57 E-value=6.5 Score=32.93 Aligned_cols=62 Identities=8% Similarity=0.074 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcC--CCCcceEEEeee
Q 015694 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL--NYEDYTAEIKTA 81 (402)
Q Consensus 16 g~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl--~~~~~~~~I~~~ 81 (402)
-.+.|+.||..++ .+.+.|..||.++..+..... | ...|.+++.+.+..+ .|.+.+++|..+
T Consensus 36 n~~~v~~~~~a~~~~d~~~l~~~~a~D~v~~~p~~-g---~~~G~e~~~~~~~~~~~~~pd~~~~i~~~ 100 (159)
T 3k0z_A 36 MVHAAQRFYAFWDTGKEELIPQTVTENFFDHTLPK-G---RPQGTEGLKFAAQNFRKIVPNIHCEIEDL 100 (159)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHEEEEEEESSCCT-T---CCSSHHHHHHHHHHHHTTCCSEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHcCCCeEEecCCC-C---CCCCHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 4678999999999 477899999999877665432 2 478999888877543 244667776654
No 278
>1s5a_A Hypothetical protein YESE; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 1.70A {Bacillus subtilis} SCOP: d.17.4.10
Probab=80.51 E-value=12 Score=30.10 Aligned_cols=55 Identities=13% Similarity=0.200 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHc-cCcccccccccCCCeeeccCC-CCccceeccHHHHHHHHhcC
Q 015694 15 VGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDS-NGSMTTVTTMKAINDRILSL 69 (402)
Q Consensus 15 vg~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~-~~~~~~~~g~~~I~~~i~sl 69 (402)
--...|++||..++ .+.+.|..+|.++..+..... .|......|.++|.+.+..+
T Consensus 11 ~~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~p~~~~g~~~~~~G~~~i~~~~~~~ 67 (150)
T 1s5a_A 11 KACETLRKFMAYMLEKDMKSWTELWDENAVFEFPYAPEGSPKRIEGKAAIYDYIKDY 67 (150)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTCCTTSCSEEESHHHHHHHHTTH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHhCCCCEEEEeecCCCCCCccccCHHHHHHHHHHh
Confidence 35678999999988 567799999999988876421 23223589999999988765
No 279
>3i0y_A Putative polyketide cyclase; cystatin-like fold, structural genomics, joint center for ST genomics, JCSG, protein structure initiative; HET: MSE UNL; 1.50A {Xanthomonas campestris PV}
Probab=79.00 E-value=15 Score=29.29 Aligned_cols=51 Identities=14% Similarity=0.213 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCC
Q 015694 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN 70 (402)
Q Consensus 16 g~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~ 70 (402)
..+.|+.||..++ .+.+.|..+|.++..+...+ | ....|.++|.+.+..+.
T Consensus 10 ~~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~p~--~--~~~~G~~~~~~~~~~~~ 61 (140)
T 3i0y_A 10 ATGLVQAYYEAFNRGDWDAMLAFLAEDVAHDLNQ--G--PREIGRAAFASFLQRMN 61 (140)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEECTT--S--CEEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHcCCcEEEEcCC--C--CceEcHHHHHHHHHHHh
Confidence 4578999999998 57889999999987655442 1 26889999999887764
No 280
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=78.35 E-value=14 Score=30.01 Aligned_cols=60 Identities=7% Similarity=-0.106 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcC
Q 015694 9 APSAQVVGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69 (402)
Q Consensus 9 ~~~~~~vg~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl 69 (402)
....-.+.++.++.||..+. .+.+.|..++.++..+.+.+. +......|+++|.+.+..+
T Consensus 7 ~~~~~~~~~~~~~~f~~A~~~gD~~~l~~lla~D~v~~~pg~-~~~g~~~G~~~v~~~~~~~ 67 (134)
T 3dmc_A 7 SDNTLKVAHQGFEFFTQGLATGEWQKFLDMLTEDFTFWFPMG-EFHGLNVGKERAKEFFTYV 67 (134)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHSCCHHHHTTEEEEEEEEESSG-GGBEEEESHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCHHHHHHHcCCCEEEEecCC-CCCccchhHHHHHHHHHHH
Confidence 34556789999999999987 677899999999998887764 3223588999998877544
No 281
>3ebt_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; 1.30A {Burkholderia pseudomallei K96243} SCOP: d.17.4.9
Probab=77.34 E-value=9.1 Score=30.23 Aligned_cols=65 Identities=14% Similarity=0.051 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeeccCC---CCccceeccHHHHHHHHhcCC--CCcceEEEeee
Q 015694 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDS---NGSMTTVTTMKAINDRILSLN--YEDYTAEIKTA 81 (402)
Q Consensus 17 ~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~---~~~~~~~~g~~~I~~~i~sl~--~~~~~~~I~~~ 81 (402)
.+-|++||..++ .+.+.|..+|.++..+...+. .+......|.++|.+.+..+. +.+.+++|..+
T Consensus 6 ~~~v~~~~~a~~~~d~~~~~~l~a~D~~~~~~~~~~p~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (132)
T 3ebt_A 6 MQTVRESYEAFHRRDLPGVLAALAPDVRWTHPDGMSPYGLGGTKHGHDEVIAFIRHVPTHIAEMRLAPDEF 76 (132)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEECGGGGGGTCCEEEEHHHHHHHHHHHGGGTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhccCHHHHHHhcCCCEEEEeCCCCCCcccCCcCcCHHHHHHHHHHHHhhCCceEEEEeEE
Confidence 456888888888 466889999999887655421 000025789999999887654 23445555443
No 282
>3f7x_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL; 1.24A {Pseudomonas putida KT2440}
Probab=76.40 E-value=20 Score=29.46 Aligned_cols=51 Identities=10% Similarity=0.158 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCC
Q 015694 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN 70 (402)
Q Consensus 16 g~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~ 70 (402)
.++.|+.||..++ .+.+.|..+|.++..+..+. | ....|.++|.+.+..+.
T Consensus 22 ~~~lv~~~~~a~~~~D~~~l~~l~a~D~v~~~p~--g--~~~~G~e~i~~~~~~~~ 73 (151)
T 3f7x_A 22 ATELVNAYYAAFNAGDMPAFLALLSEDVIHDINQ--G--ERQMGKARFAAFMEKMN 73 (151)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEECTT--S--CEEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCEEEECCC--C--CCcCCHHHHHHHHHHHH
Confidence 4678999999998 57789999999998864322 1 26889999999887553
No 283
>3ehc_A Snoal-like polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.12A {Agrobacterium tumefaciens str}
Probab=76.36 E-value=3.7 Score=32.69 Aligned_cols=71 Identities=13% Similarity=0.087 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcC--CCCcceEEEeeeEeeeeCCCcEEE
Q 015694 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL--NYEDYTAEIKTADAQDSYEKGVIV 93 (402)
Q Consensus 17 ~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl--~~~~~~~~I~~~d~q~s~~~~vlv 93 (402)
.+.|+.||..++ .+.+.|..||.++..+. | ...|.+++.+.+..+ .|.+++++|..+-+. ++ .|
T Consensus 6 ~~~v~~~~~~~~~~d~~~~~~~~a~d~~~~--~------~~~G~~~~~~~~~~~~~~~pd~~~~i~~~~~~---gd--~v 72 (128)
T 3ehc_A 6 NDIYLAYLDSLNHQAFDELGTFVDDNVEHN--G------RPFGLSGYRDMLVKDFADIPDLRFEAEILVSD---AT--RL 72 (128)
T ss_dssp HHHHHHHHHHHHTTCGGGGGGTEEEEEEET--T------BCCHHHHHHHHHHHHHHHCTTCCCCEEEEEEC---SS--EE
T ss_pred HHHHHHHHHHHhcCCHHHHHHhcCcceEeC--C------CCCCHHHHHHHHHHHHhhCCCceEEEEEEEEE---CC--EE
Confidence 578899999988 56778999999887552 3 367888888777543 233667777654331 23 34
Q ss_pred EEEEEEE
Q 015694 94 LVTGCLT 100 (402)
Q Consensus 94 ~V~G~l~ 100 (402)
.+.+.++
T Consensus 73 ~~~~~~~ 79 (128)
T 3ehc_A 73 AARLFFD 79 (128)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 4555554
No 284
>1sjw_A Nogalonic acid methyl ester cyclase; anthracyclines, nogalamycin, snoal, aldol condensation, LYAS structural genomics; HET: NGV; 1.35A {Streptomyces nogalater} SCOP: d.17.4.9
Probab=75.81 E-value=16 Score=29.31 Aligned_cols=63 Identities=11% Similarity=0.073 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCC--CC-cceEEEeeeE
Q 015694 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YE-DYTAEIKTAD 82 (402)
Q Consensus 17 ~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~--~~-~~~~~I~~~d 82 (402)
.+.|++||..++ .+.+.|..+|.++..+...+.. . ...|.++|.+.+..+- |. +.+++|..+-
T Consensus 5 ~~~v~~~~~a~~~~d~~~~~~~~a~d~~~~~~~~~-~--~~~G~~~~~~~~~~~~~~~~~~~~~~i~~~~ 71 (144)
T 1sjw_A 5 TEIVRRMVSAFNTGRTDDVDEYIHPDYLNPATLEH-G--IHTGPKAFAQLVGWVRATFSEEARLEEVRIE 71 (144)
T ss_dssp HHHHHHHHHHHHHCCCTTGGGTEEEEEECGGGGGG-T--CCSHHHHHHHHHHHHHHHHCTTCEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCHHHHHHHcCcCeEEccCCCC-C--CCCCHHHHHHHHHHHHHhCCCCcEEEEEEEE
Confidence 568899999888 5678999999998766544321 0 1279999988776542 33 5667776543
No 285
>3ec9_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.60A {Burkholderia thailandensis E264} SCOP: d.17.4.10
Probab=75.44 E-value=19 Score=28.78 Aligned_cols=65 Identities=12% Similarity=0.123 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHH-HHHhcCC--CCcceEEEeee
Q 015694 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAIN-DRILSLN--YEDYTAEIKTA 81 (402)
Q Consensus 17 ~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~-~~i~sl~--~~~~~~~I~~~ 81 (402)
.+.|++||..++ .+.+.|..+|.++..+...+.........|.++|. +.+..+. +.++++++..+
T Consensus 15 ~~~v~~~~~a~~~gD~~~~~~l~a~D~~~~~~~~~p~~g~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~ 83 (140)
T 3ec9_A 15 YQIVADHYAASDRHDPAAMMADIAPAIEWTEMAGFPCAGTYRSADEIVRNVFRRLGEEWDGYTFKLDAL 83 (140)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEECTTSTTCEEECSHHHHHHHTHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCHHHHHHhcCCCeEEEEcCCCccceEEcCHHHHHHHHHHHHHhhCCcceeEEEEE
Confidence 467888999887 46789999999998776554111112578999995 4454332 22445555443
No 286
>1z1s_A Hypothetical protein PA3332; beta barrel, conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: PGE; 1.49A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.10
Probab=75.05 E-value=21 Score=29.70 Aligned_cols=54 Identities=11% Similarity=0.125 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHcc-CcccccccccCCCeeeccCC-CCccceeccHHHHHHHHhcCC
Q 015694 17 NAFVEQYYHILHQ-SPGLVHRFYQDSSLLSRPDS-NGSMTTVTTMKAINDRILSLN 70 (402)
Q Consensus 17 ~~FV~~YY~~l~~-~p~~L~~fY~~~S~l~~~~~-~~~~~~~~g~~~I~~~i~sl~ 70 (402)
.+.|++||..++. +.+.|..+|.++..+...+. .|......|.++|.+.+..+.
T Consensus 26 ~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~P~~~~g~~~~~~G~~ai~~~~~~~~ 81 (163)
T 1z1s_A 26 KEILVHSLRLLENGDARGWCDLFHPEGVLEFPYAPPGWKTRFEGRETIWAHMRLFP 81 (163)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTEEEEEEEECSSCCTTSCCEEESHHHHHHTTTTGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCEEEECcCCCCCCCcccCCHHHHHHHHHHHH
Confidence 4568899999884 66799999999998876532 232335889999999887654
No 287
>2a15_A Hypothetical protein RV0760C; beta-alpha-barrel, structural genomics, PSI, protein structure initiative; 1.68A {Mycobacterium tuberculosis} SCOP: d.17.4.3 PDB: 2z76_A* 2z77_A* 2z7a_A
Probab=74.85 E-value=27 Score=27.70 Aligned_cols=54 Identities=6% Similarity=0.018 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeeccCCC----CccceeccHHHHHHHHhcC
Q 015694 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSN----GSMTTVTTMKAINDRILSL 69 (402)
Q Consensus 16 g~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~----~~~~~~~g~~~I~~~i~sl 69 (402)
....++.||..++ .+.+.|..+|.++..+...... +......|.++|.+.+..+
T Consensus 9 ~~~~v~~~~~a~~~~D~~~~~~l~a~D~v~~~p~~~~~~~~~g~~~~G~~ai~~~~~~~ 67 (139)
T 2a15_A 9 ALIASQSSWRCVQAHDREGWLALMADDVVIEDPIGKSVTNPDGSGIKGKEAVGAFFDTH 67 (139)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHTEEEEEEEESSSSSBTTBTTSSCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHhcCCCEEEECCCCCCccCCCCceeecHHHHHHHHHHh
Confidence 4567899999998 4677999999999877643210 0001278999999988765
No 288
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=74.83 E-value=1.5 Score=36.50 Aligned_cols=38 Identities=0% Similarity=-0.339 Sum_probs=33.2
Q ss_pred CcccEEEEEeCCHHHHHHHHHhC--CCccCCEEEEEEEeee
Q 015694 341 QGYCFGFVAFETPGSVQSALEVL--SLISLSLIIKIVLGVY 379 (402)
Q Consensus 341 ~~~gfgFVeF~~~~~a~~Al~~~--~~~i~Gr~i~V~~~~~ 379 (402)
+.+|+++|+|.+.+.|++|++.+ +..++| .|.+.++..
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 57899999999999999999877 789999 888887654
No 289
>3g8z_A Protein of unknown function with cystatin-like FO; NP_639274.1, snoal-like polyketide cyclase; HET: MSE; 1.90A {Xanthomonas campestris PV}
Probab=74.61 E-value=6.6 Score=32.35 Aligned_cols=54 Identities=7% Similarity=0.113 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcC
Q 015694 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69 (402)
Q Consensus 16 g~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl 69 (402)
-.+.|+.||..++ .+.+.|..+|.++..+...+...-.....|.++|.+.+..+
T Consensus 22 n~~~v~~~~~a~~~gD~~~l~~l~a~D~v~~~p~~~~~~g~~~G~~~v~~~~~~~ 76 (148)
T 3g8z_A 22 TIDIAKSYITAIQTGDHATLGSIISPDVIWHQPGNHQFSGTHRGMAVVGPMLGKM 76 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEECSSSTTCEEEESHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHcCCCEEEEcCCCCCCCceEcCHHHHHHHHHHH
Confidence 4667888888888 46778999999998877665311112478999999877543
No 290
>3g0k_A Putative membrane protein; snoal-like polyketide cyclase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.30A {Novosphingobium aromaticivorans}
Probab=74.45 E-value=15 Score=30.34 Aligned_cols=78 Identities=12% Similarity=0.142 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHH-HHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCC--CCcceEEEeeeEeeeeC
Q 015694 12 AQVVGNAFVEQYYH-ILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YEDYTAEIKTADAQDSY 87 (402)
Q Consensus 12 ~~~vg~~FV~~YY~-~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~--~~~~~~~I~~~d~q~s~ 87 (402)
..+--.+.|+.||. .++ .+.+.|..||.++......+ ...|.+++.+.+..+- +.+.+++|..+-+ -
T Consensus 25 ~~~~nk~lV~~f~~~a~~~~D~~~~~~~~a~D~v~h~P~------~~~G~e~~~~~~~~~~~~~pd~~~~i~~iia---e 95 (148)
T 3g0k_A 25 EEQANHDLVIEMYNKVLIAMDSSAVDRYIAPGYVQHSSL------AEPSVEALKGFLDRVRAESPDARQTIHRSFV---D 95 (148)
T ss_dssp HHHHHHHHHHHHHHHTTTTTCGGGGGGTEEEEEEECCSS------SCSSHHHHHHHHHHHHHHCCSCEEEEEEEEE---E
T ss_pred cHHHHHHHHHHHHHHHHhcCCHHHHHHhcCcCeEEcCCC------CCCCHHHHHHHHHHHHHhCCCceEEEEEEEE---E
Confidence 44566789999999 776 67789999999885544333 2478888887775432 2355666654332 1
Q ss_pred CCcEEEEEEEEEE
Q 015694 88 EKGVIVLVTGCLT 100 (402)
Q Consensus 88 ~~~vlv~V~G~l~ 100 (402)
++ .|.+.+.++
T Consensus 96 GD--~V~~~~~~~ 106 (148)
T 3g0k_A 96 GD--HVITHTHVE 106 (148)
T ss_dssp TT--EEEEEEEEE
T ss_pred CC--EEEEEEEEE
Confidence 22 345555554
No 291
>2gex_A SNOL; alpha+beta barrel, oxidoreductase; 2.50A {Streptomyces nogalater} SCOP: d.17.4.9
Probab=74.12 E-value=34 Score=27.77 Aligned_cols=61 Identities=7% Similarity=0.061 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCC--CCcceEEEeee
Q 015694 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YEDYTAEIKTA 81 (402)
Q Consensus 16 g~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~--~~~~~~~I~~~ 81 (402)
....|++||..++ .+.+.|..+|.++..+.... + ...|.++|.+.+..+- |.+.+++|..+
T Consensus 6 ~~~~v~~~~~a~~~~d~~~~~~~~a~D~v~~~~~--~---~~~G~~~~~~~~~~~~~~~~~~~~~i~~~ 69 (152)
T 2gex_A 6 NKERCLEMVAAWNRWDVSGVVAHWAPDVVHYDDE--D---KPVSAEEVVRRMNSAVEAFPDLRLDVRSI 69 (152)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTT--S---CEECHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHcCCCeEEeCCC--C---CCCCHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 4678899999887 45578999999988766532 1 4789999988775432 33667777654
No 292
>2bng_A MB2760; epoxide hydrolase, limonene, hydrolase, structural proteomics in europe, spine, structural genomics; 2.5A {Mycobacterium tuberculosis} SCOP: d.17.4.8
Probab=74.06 E-value=13 Score=30.30 Aligned_cols=64 Identities=9% Similarity=0.092 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCCCC-cceEEEeee
Q 015694 14 VVGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYE-DYTAEIKTA 81 (402)
Q Consensus 14 ~vg~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~~-~~~~~I~~~ 81 (402)
.-..+.|+.||..++ .+.+.|..+|.++..+...+. ....|.++|.+.+..+.-. +.+++|..+
T Consensus 15 ~~~~~~v~~f~~a~~~gD~~~l~~l~a~D~v~~~~~~----~~~~G~~~i~~~~~~~~~~~~~~~~i~~~ 80 (149)
T 2bng_A 15 TEAIRAVEAFLNALQNEDFDTVDAALGDDLVYENVGF----SRIRGGRRTATLLRRMQGRVGFEVKIHRI 80 (149)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEETTT----EEEECHHHHHHHHHTTTTTCEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHcCCCEEEEeCCC----CCccCHHHHHHHHHHHHhhcCcEEEEEEE
Confidence 345678999999988 466799999999976663332 2578999999999876521 344444433
No 293
>3f9s_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.76A {Acidithiobacillus ferrooxidans atcc 23}
Probab=72.28 E-value=12 Score=30.19 Aligned_cols=66 Identities=11% Similarity=0.166 Sum_probs=44.4
Q ss_pred HHHHHHHHHH-HHc-cCcccccccccCCCe-eeccCCCCccceeccHHHHHHHHhcC--CCCcceEEEeeeE
Q 015694 16 GNAFVEQYYH-ILH-QSPGLVHRFYQDSSL-LSRPDSNGSMTTVTTMKAINDRILSL--NYEDYTAEIKTAD 82 (402)
Q Consensus 16 g~~FV~~YY~-~l~-~~p~~L~~fY~~~S~-l~~~~~~~~~~~~~g~~~I~~~i~sl--~~~~~~~~I~~~d 82 (402)
-.+.|++||. .++ .+.+.|..||.++.. ....+. .-.....|.+++.+.+..+ .|.+.+++|..+-
T Consensus 8 ~~~~v~~~~~~~~~~~d~~~~~~~~a~d~~~~~~p~~-~~~g~~~G~~~~~~~~~~~~~~~pd~~~~i~~~~ 78 (146)
T 3f9s_A 8 AKEILTQFTREVWSEGNIEASDKYIAPKYTVLHDPGD-PWEGRELDVAGYKERVKTLRAAFPDQCFDIQGLF 78 (146)
T ss_dssp HHHHHHHHHHHHTTTCCGGGHHHHEEEEEEEEECTTC-TTTTCEECHHHHHHHHHHHHHHSTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHcCCCeeeccCCCC-CCCCCcCCHHHHHHHHHHHHhhCCCcEEEEEEEE
Confidence 3577899996 666 578899999999987 444431 0011478999998877644 2446777776553
No 294
>2gey_A ACLR protein; alpha+beta barrel, oxidoreductase; HET: PG4; 1.80A {Streptomyces galilaeus} SCOP: d.17.4.9
Probab=71.29 E-value=29 Score=28.47 Aligned_cols=61 Identities=8% Similarity=0.030 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCC--CCcceEEEeeeE
Q 015694 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YEDYTAEIKTAD 82 (402)
Q Consensus 16 g~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~--~~~~~~~I~~~d 82 (402)
..+.|+.||..++ .+.+.|..+|.++..+...+ ...|.++|.+.+..+- |.+.+++|..+-
T Consensus 6 ~~~~v~~~~~a~~~~D~~~~~~~~a~D~v~~~p~------~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~ 69 (158)
T 2gey_A 6 RKALCLEMVAAWNRWDLSGIIKHWSPDIVHYSED------NEVSSADMVKLMEGGLKAFPDLQLEVKSIM 69 (158)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHTTEEEEEEEEETT------EEECHHHHHHHHHHHHHHSTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHcCCCeEEeCCC------CCCCHHHHHHHHHHHHHhCCCcEEEEEEEE
Confidence 4678899999888 46678999999988766532 4789999988776432 346677776543
No 295
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7
Probab=71.00 E-value=23 Score=29.29 Aligned_cols=108 Identities=6% Similarity=-0.012 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCee-ec--cCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeEeeeeCCCcEE
Q 015694 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLL-SR--PDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGVI 92 (402)
Q Consensus 17 ~~FV~~YY~~l~-~~p~~L~~fY~~~S~l-~~--~~~~~~~~~~~g~~~I~~~i~sl~~~~~~~~I~~~d~q~s~~~~vl 92 (402)
...+++|...++ .+-+.+.++|.++-++ -+ .+. .+.|.+.+...+........+.++.....+...++..+
T Consensus 15 ~~~~~~~~~Ai~~gD~~~~~~l~~~dv~~Fd~~~~g~-----~~~g~~~~r~~f~~~~~~~~~~~~~~~~V~~~g~d~Av 89 (143)
T 2f86_B 15 VRVTQTLLDAISCKDFETYTRLCDTSMTCFEPEALGN-----LIEGIEFHRFYFDGNRKNQVHTTMLNPNVHIIGEDAAC 89 (143)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHEEEEEEEECGGGTTC-----CEETTHHHHTTSSSCSCCSCEEEEEEEEEEEETTTEEE
T ss_pred HHHHHHHHHHHHccCHHHHHHhcCCCEEEEccCcCCc-----cccCHHHHHHHHhcccCCcceeEEEcceEEEeCCCEEE
Confidence 467788888877 7888999999977644 33 333 47799888755433222345667777766766534333
Q ss_pred EE---EEEEEEeCCCc-ccceeEEEEeeEcCCCcEEEEeceE
Q 015694 93 VL---VTGCLTGKDNV-KKKFTQTFFLAPQDKGGYFVLNDVF 130 (402)
Q Consensus 93 v~---V~G~l~~~~~~-~r~F~qtF~L~~~~~~~y~V~nDif 130 (402)
+. .++....++.+ ...+--|.++...++ +|.|...=.
T Consensus 90 ~~y~~~~~~~~~~G~~~~~~~r~T~V~~k~~g-~WkivH~H~ 130 (143)
T 2f86_B 90 VAYVKLTQFLDRNGEAHTRQSQESRVWSKKQG-RWVCVHVHR 130 (143)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEEEEEETT-EEEEEEEEE
T ss_pred EEEEeeeeeccCCCCeeeEEEEEEEEEEEeCC-cEEEEEEeE
Confidence 22 12222223322 345777888888775 899887544
No 296
>3ke7_A Putative ketosteroid isomerase; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE BCN; 1.45A {Parabacteroides distasonis atcc 8503}
Probab=70.25 E-value=25 Score=28.80 Aligned_cols=101 Identities=8% Similarity=0.065 Sum_probs=64.6
Q ss_pred HHHc-cCcccccccccCCCeee-ccCCCCccceeccHHHHHHHHhcCCC-CcceEEEeeeEeeeeCCCcEEEEEEEEEEe
Q 015694 25 HILH-QSPGLVHRFYQDSSLLS-RPDSNGSMTTVTTMKAINDRILSLNY-EDYTAEIKTADAQDSYEKGVIVLVTGCLTG 101 (402)
Q Consensus 25 ~~l~-~~p~~L~~fY~~~S~l~-~~~~~~~~~~~~g~~~I~~~i~sl~~-~~~~~~I~~~d~q~s~~~~vlv~V~G~l~~ 101 (402)
..|+ .+.+.+..+|.++.++- ..+. ..+.|.++|..++..+.- ..++.+|.....|-..+-+++- ..+..
T Consensus 25 ~~L~~gD~~~~~~lyapDvt~fDp~~~----~~~~G~~a~r~yf~~~~~~~~~~~ei~~p~V~v~gD~A~~~---y~l~~ 97 (134)
T 3ke7_A 25 EALASTDPMAFVELSDTDVIYFDPSLE----TKIEGLEQLRTYYKGMQLPPADHFDMIRPVVQVAQNIAVLT---FNLDS 97 (134)
T ss_dssp HHHHCSCTTHHHHHEEEEEEEECTTCS----SCEESHHHHHHHHHHHCCCCCSEEEEEEEEEEEETTEEEEE---EEEEE
T ss_pred HHHhCCCHHHHHHhcCCCEEEEcCCCc----cccCCHHHHHHHHHhcccCCcceEEEeCCeEEEeCceEEEE---EEEEE
Confidence 3444 78889999999886552 2221 257899999999876432 2367888877777744433331 22221
Q ss_pred -CCCcccceeEEEEeeEcCCCcEEEEeceEEe
Q 015694 102 -KDNVKKKFTQTFFLAPQDKGGYFVLNDVFRF 132 (402)
Q Consensus 102 -~~~~~r~F~qtF~L~~~~~~~y~V~nDifr~ 132 (402)
.+......-.|+++...++|+|.|.+.=..+
T Consensus 98 ~~~~~~~~~r~T~V~~r~~dG~W~ivH~H~S~ 129 (134)
T 3ke7_A 98 YLSDKVIKWNCTEVYRRNPDNQWKIIQTHWSY 129 (134)
T ss_dssp EETTEEEEEEEEEEEEECTTSBEEEEEEEEEE
T ss_pred eeCCCcEEEEEEEEEEEcCCCcEEEEEEeecc
Confidence 1223456778889988845699998865544
No 297
>2f99_A Aklanonic acid methyl ester cyclase, AKNH; anthracycline,polyketide cyclase,stereoselectivity, aklavino biosynthetic protein; HET: AKV; 1.90A {Streptomyces galilaeus} SCOP: d.17.4.9 PDB: 2f98_A*
Probab=70.11 E-value=33 Score=28.00 Aligned_cols=64 Identities=6% Similarity=-0.008 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcC--CCC-cceEEEeeeE
Q 015694 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL--NYE-DYTAEIKTAD 82 (402)
Q Consensus 16 g~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl--~~~-~~~~~I~~~d 82 (402)
..+.|+.||..++ .+.+.|..||.++..+...+.. . ...|.++|.+.+..+ .|. +++++|..+-
T Consensus 13 ~~~~v~~~~~a~~~~d~~~~~~~~a~D~v~~~p~~~-~--~~~G~~~~~~~~~~~~~~~p~d~~~~i~~~~ 80 (153)
T 2f99_A 13 QIAAVRRMVEAYNTGKTDDVADYIHPEYMNPGTLEF-T--SLRGPELFAINVAWVKKTFSEEARLEEVGIE 80 (153)
T ss_dssp HHHHHHHHHHHHHHCCCTTGGGTEEEEEECGGGTTT-C--CCCHHHHHHHHHHHHHHHHCTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCHHHHHHhcCCCeEEecCCCC-C--CCCCHHHHHHHHHHHHHHCCCCcEEEEEEEE
Confidence 4677899999988 5678999999998766544431 1 247999998877654 244 5667776543
No 298
>3kkg_A Putative snoal-like polyketide cyclase; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, lyase; HET: MSE PGE; 1.40A {Jannaschia SP}
Probab=66.72 E-value=5.7 Score=32.38 Aligned_cols=63 Identities=5% Similarity=-0.079 Sum_probs=44.8
Q ss_pred HHHHHHHHHH-HHcc-C--cccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCC--CCcceEEEeeeE
Q 015694 16 GNAFVEQYYH-ILHQ-S--PGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YEDYTAEIKTAD 82 (402)
Q Consensus 16 g~~FV~~YY~-~l~~-~--p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~--~~~~~~~I~~~d 82 (402)
-.+.|+.||. .++. + .+.|..||.++..+..+.. ....|.+++.+.+..+- |.+.+++|..+-
T Consensus 11 n~~~v~~~~~~~~~~~d~~~~~~~~~~a~d~~~~~~~~----~~~~G~~~~~~~~~~~~~~~pd~~~~i~~~~ 79 (146)
T 3kkg_A 11 NVETVLRLFDEGWGAQDGWRDVWRETMTPGFRSIFHSN----QAVEGIEQAIAFNAVLFEGFPRLEVVVENVT 79 (146)
T ss_dssp HHHHHHGGGTTTSTTSTTHHHHHHHHEEEEEEEEETTS----CCEESHHHHHHHHHHHHHHSTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHcCCCeEEecCCC----CCCCCHHHHHHHHHHHHHhCCCceeEEEEEE
Confidence 4678999999 7774 4 6789999999887764432 14789998888775432 346677776553
No 299
>2rgq_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.80A {Nostoc punctiforme} SCOP: d.17.4.25
Probab=65.85 E-value=51 Score=26.50 Aligned_cols=111 Identities=5% Similarity=-0.029 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcC---CCCcceEEEeeeEeeeeCCCc
Q 015694 15 VGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL---NYEDYTAEIKTADAQDSYEKG 90 (402)
Q Consensus 15 vg~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl---~~~~~~~~I~~~d~q~s~~~~ 90 (402)
--..|+..|...|+ .+.+.+..+|.++..+...+ | ...|.++|.+.+... ....+.|.|.++..... ++.
T Consensus 11 ~I~~l~~rya~~lD~~d~~~~~~lft~Da~~~~~~--g---~~~g~~~i~~~~~~~~~~~~~~t~H~i~n~~i~~~-~d~ 84 (144)
T 2rgq_A 11 EIMELAARFEMSLDKEDVENYLATFASDGALQGFW--G---IAKGKEELRQGFYAMLDTFARGKRHCSSNAIIQGN-YDE 84 (144)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEETT--E---EEESHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEC-SSE
T ss_pred HHHHHHHHHHHHHcCCCHHHHHhhccCcEEEEcCC--C---CCCCHHHHHHHHHHHHhhCCCCcEEecCCeEEEEe-CCE
Confidence 45689999999999 57778999999988765542 2 247999988877532 11236777877666332 232
Q ss_pred EEEEEEEEEEeCCCcccce-e-EEEEeeEcCCCcEEEEeceEEe
Q 015694 91 VIVLVTGCLTGKDNVKKKF-T-QTFFLAPQDKGGYFVLNDVFRF 132 (402)
Q Consensus 91 vlv~V~G~l~~~~~~~r~F-~-qtF~L~~~~~~~y~V~nDifr~ 132 (402)
..+.....+.........+ . -...|...++ +|.|..-.+.+
T Consensus 85 a~~~~~~~~~~~~~~~~~~~g~y~d~~~r~dg-~Wri~~r~~~~ 127 (144)
T 2rgq_A 85 ATMESYLTVVNREDLNRAGSAFVKDQVRKING-KWYLILRQIEV 127 (144)
T ss_dssp EEEEEEEEEEESSSSCEEEEEEEEEEEEEETT-EEEEEEEEEEE
T ss_pred EEEEEEEEEEEecCCeEEEEEEEEEEEEEECC-EEEEEEEEEEe
Confidence 2222222222211111111 1 1224555554 78888865543
No 300
>1tuh_A BAL32A, hypothetical protein EGC068; unknown function; 1.85A {Uncultured bacterium} SCOP: d.17.4.11
Probab=65.24 E-value=14 Score=30.30 Aligned_cols=67 Identities=9% Similarity=0.093 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCC--CC-cceEEEeee
Q 015694 15 VGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YE-DYTAEIKTA 81 (402)
Q Consensus 15 vg~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~--~~-~~~~~I~~~ 81 (402)
-..+.|++||..++ .+.+.|..+|.++..+...+...-.....|.++|.+.+..+. +. +.+++|..+
T Consensus 30 ~~~~~v~~~~~a~~~gD~~~l~~l~a~D~~~~~~~~~~~~g~~~G~~~i~~~~~~~~~~~~~~~~~~i~~~ 100 (156)
T 1tuh_A 30 QNAETVRRGYAAFNSGDMKTLTELFDENASWHTPGRSRIAGDHKGREAIFAQFGRYGGETGGTFKAVLLHV 100 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEECSSSTTCEEEESHHHHHHHHHHHHHTTTTCCEEEEEEE
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHhcCCCEEEEccCCCCccceEcCHHHHHHHHHHHHhhcCCceEEEEEEE
Confidence 45778999999988 467799999999987765543111124789999988776532 11 344555543
No 301
>3ef8_A Putative scyalone dehydratase; YP_496742.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE PG4; 1.50A {Novosphingobium aromaticivorans DSM12444} SCOP: d.17.4.28
Probab=64.46 E-value=47 Score=27.04 Aligned_cols=109 Identities=9% Similarity=0.021 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcC--CCCcceEEEeeeEeeeeCCCcEEE
Q 015694 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL--NYEDYTAEIKTADAQDSYEKGVIV 93 (402)
Q Consensus 17 ~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl--~~~~~~~~I~~~d~q~s~~~~vlv 93 (402)
..++..|...|+ .+.+.+..+|.++..+...+. ....|.++|.+.+..+ ++..+.|-|.++......++...+
T Consensus 14 ~~l~~ry~~~~D~~d~~~~~~lFt~D~~~~~~~~----~~~~G~~~i~~~~~~~~~~~~~~~H~~~n~~I~~~gdd~A~~ 89 (150)
T 3ef8_A 14 ERMMFDYSYHLDMNHPEELAALFVEDCEVSYAPN----FGATGRDAYKKTLEGIGTFFRGTSHHNSNICIDFVSETEANV 89 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEEETT----EEEESHHHHHHHTTTHHHHEEEEEEEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHhcCCCHHHHHhhccCceEEEccCC----CCCCCHHHHHHHHHHhhcccCceEEecCCEEEEEcCCCEEEE
Confidence 568889999999 577899999999987765331 1378999999988664 233456666665554433333332
Q ss_pred EEEEEE--EeCCCcc-----cceeEEEEeeEcCCCcEEEEeceEEe
Q 015694 94 LVTGCL--TGKDNVK-----KKFTQTFFLAPQDKGGYFVLNDVFRF 132 (402)
Q Consensus 94 ~V~G~l--~~~~~~~-----r~F~qtF~L~~~~~~~y~V~nDifr~ 132 (402)
...-.+ ...++.. -++.. .|...++ +|.|..=.++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~gry~d--~~~r~dg-~Wri~~r~~~~ 132 (150)
T 3ef8_A 90 RSVVLAIHRYTKERPDGILYGQYFD--TVVKVDG-QWKFKRRELRT 132 (150)
T ss_dssp EEEEEEEEEESSSSCCEEEEEEEEE--EEEEETT-EEEEEEEEEEE
T ss_pred EEEEEEEEEccCCCCeEEEEEEEEE--EEEEECC-EEEEEEEEEEe
Confidence 222222 1122111 12223 3444444 88888776643
No 302
>1oh0_A Steroid delta-isomerase; ketosteroid isomerase, KSI, equilenin, PI, LBHB; HET: EQU; 1.1A {Pseudomonas putida} SCOP: d.17.4.3 PDB: 1e3v_A* 1opy_A 1dmq_A 1dmm_A 1ea2_A 3cpo_A 1e3r_A* 1ogx_A 2inx_A 2pzv_A 1c7h_A 1dmn_A 1k41_A 1oho_A* 3fzw_A* 1cqs_A* 1w00_A 1e97_A 1w6y_A* 3ipt_A* ...
Probab=64.42 E-value=30 Score=26.87 Aligned_cols=53 Identities=9% Similarity=0.139 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHcc-CcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcC
Q 015694 14 VVGNAFVEQYYHILHQ-SPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69 (402)
Q Consensus 14 ~vg~~FV~~YY~~l~~-~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl 69 (402)
.-....|+.||..+++ +.+.|..+|.++..+...+. .....|.++|.+.+..+
T Consensus 7 ~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~p~~---~~~~~G~~~i~~~~~~~ 60 (131)
T 1oh0_A 7 QEVQGLMARYIELVDVGDIEAIVQMYADDATVEDPFG---QPPIHGREQIAAFYRQG 60 (131)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEESSTT---SCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHcCCCEEEEcCCC---CCCcccHHHHHHHHHHH
Confidence 3456789999999994 67899999999987765532 11588999999988654
No 303
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=61.69 E-value=20 Score=36.38 Aligned_cols=54 Identities=22% Similarity=0.306 Sum_probs=42.2
Q ss_pred CcEEEEccCCCCCCHHHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC
Q 015694 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL 363 (402)
Q Consensus 302 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~ 363 (402)
.+.++|+ .+..+...+|.++|+.||.+. +++ ++ ...+||.|.+.+.+..++...
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~-V~w-id-----dt~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQ-ISW-ID-----DTSAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCE-EEE-CS-----SSEEEEECSCHHHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEE-EEE-Ec-----CCeEEEEECCHHHHHHHHHHH
Confidence 4567776 888899999999999999653 322 22 235999999999999998876
No 304
>3fgy_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.59A {Burkholderia xenovorans LB400} SCOP: d.17.4.0
Probab=61.50 E-value=7.7 Score=30.86 Aligned_cols=54 Identities=7% Similarity=-0.012 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcC
Q 015694 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69 (402)
Q Consensus 16 g~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl 69 (402)
..+.|+.||..++ .+.+.|..+|.++..+...+...-.....|.++|.+.+..+
T Consensus 7 ~~~~v~~~~~a~~~~d~~~~~~l~a~D~~~~~p~~~p~~g~~~G~~~i~~~~~~~ 61 (135)
T 3fgy_A 7 NVQIVKDFFAAMGRGDKKGLLAVSAEDIEWIIPGEWPLAGTHRGHAALAALLQKA 61 (135)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEEECSSSTTCEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCeEEEEcCCCccceEEeCHHHHHHHHHHH
Confidence 4577889999888 47789999999998776655211112578999998887654
No 305
>2k54_A Protein ATU0742; protein of unknown function, structural genomics, PSI-2, Pro structure initiative; NMR {Agrobacterium tumefaciens str} SCOP: d.17.4.29
Probab=57.49 E-value=46 Score=25.67 Aligned_cols=91 Identities=11% Similarity=0.066 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeec-cCCCCccceeccHHHHHHHHhcC-CCCcceEEEeeeEeeeeCCCcEE
Q 015694 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSR-PDSNGSMTTVTTMKAINDRILSL-NYEDYTAEIKTADAQDSYEKGVI 92 (402)
Q Consensus 16 g~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~-~~~~~~~~~~~g~~~I~~~i~sl-~~~~~~~~I~~~d~q~s~~~~vl 92 (402)
....|+.||..++ .+.+.+..+|.++..+.. .|. ....|.++|.+.+..+ .-.+.++++..+- .. ++ .
T Consensus 5 ~~~~v~~~~~a~n~~D~~~~~~~~a~D~~~~~~~g~----~~~~G~~ai~~~~~~~~~~~~~~~~~~~~~--~~-gd--~ 75 (123)
T 2k54_A 5 IELPVQKQLEAYNARDIDAFMAWWADDCQYYAFPAT----LLAGNAAEIRVRHIERFKEPDLYGELLTRV--IV-GN--V 75 (123)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEEETTTE----EEEESHHHHHHHHHHHTTCTTCEEEEEEEE--EE-TT--E
T ss_pred HHHHHHHHHHHHHhcCHHHHHhhcCCceEEEcCCCC----cccCCHHHHHHHHHHHcCCCCcEEEEEEEE--EE-CC--E
Confidence 3567899999998 466789999999886543 321 1478999999887643 1123445544332 22 33 2
Q ss_pred EEEEEEEEeC-CCc--ccceeEEEEe
Q 015694 93 VLVTGCLTGK-DNV--KKKFTQTFFL 115 (402)
Q Consensus 93 v~V~G~l~~~-~~~--~r~F~qtF~L 115 (402)
|.+...++.. ... .......|-+
T Consensus 76 v~~~~~~~g~~~~~~~~~~~~~vf~v 101 (123)
T 2k54_A 76 VIDHETVTRNFPEGKGEVDVACIYEV 101 (123)
T ss_dssp EEEEEEEECCBTTBCCEEEEEEEEEE
T ss_pred EEEEEEEEeECCCCceEEEEEEEEEE
Confidence 3445555432 111 2445566655
No 306
>3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406}
Probab=53.49 E-value=23 Score=27.78 Aligned_cols=50 Identities=8% Similarity=0.131 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCC
Q 015694 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN 70 (402)
Q Consensus 16 g~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~ 70 (402)
.++.|+.||..++ .+.+.|..++.++..+...+. ...|.+++...+..+-
T Consensus 8 ~~~~v~~f~~A~~~gD~~~l~~lla~Dvv~~~~~g-----~~~G~~~v~~~~~~~~ 58 (114)
T 3f40_A 8 TRDLVLEFIHALNTENFPAAKKRLNENFTFNGPMG-----HREGSERYMNDMEKMK 58 (114)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHTEEEEEEEEETTE-----EEESHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCeEEECCCC-----cccCHHHHHHHHHHHH
Confidence 3566788888888 577789999999887765543 5789999999887654
No 307
>3grd_A Uncharacterized NTF2-superfamily protein; NP_977240.1, NTF2-superfamily protein with unknown function, structural genomics; HET: MSE; 1.25A {Bacillus cereus atcc 10987} SCOP: d.17.4.0
Probab=51.78 E-value=6.5 Score=31.31 Aligned_cols=81 Identities=12% Similarity=0.176 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHH-HHhcCC--CCcceEEEeeeEeeeeCCCcEE
Q 015694 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAIND-RILSLN--YEDYTAEIKTADAQDSYEKGVI 92 (402)
Q Consensus 17 ~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~-~i~sl~--~~~~~~~I~~~d~q~s~~~~vl 92 (402)
.+.|+.||..++ .+.+.|..+|.++..+...+..-......|.++|.+ .+..+. +.+.++.+..+ +...+|. .
T Consensus 7 ~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~~~~~p~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~gd-~ 83 (134)
T 3grd_A 7 LEIIRSTYEGSASSNAKHLAEALSEKVEWTEAEGFPYGGTYIGVEAIMENVFSRLGSEWNDYKASVNMY--HEVSGKD-V 83 (134)
T ss_dssp HHHHHTTTSSCHHHHHHHHHHHEEEEEEEEECTTSTTCEEEESHHHHHHHTHHHHHHHEEEEEEEEEEE--EEBTTSS-E
T ss_pred HHHHHHHHHHHhcCCHHHHHHhcCCCeEEEecCCcccCcEEeCHHHHHHHHHHHHHhhccccccchhhe--eeecCCC-E
Confidence 467888888887 456789999999987765541101125789999875 444332 23444555443 2233333 3
Q ss_pred EEEEEEEE
Q 015694 93 VLVTGCLT 100 (402)
Q Consensus 93 v~V~G~l~ 100 (402)
|.|.|.+.
T Consensus 84 v~v~~~~~ 91 (134)
T 3grd_A 84 IIAEGMYS 91 (134)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 34555554
No 308
>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis}
Probab=49.34 E-value=98 Score=28.38 Aligned_cols=56 Identities=9% Similarity=0.041 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCC
Q 015694 12 AQVVGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN 70 (402)
Q Consensus 12 ~~~vg~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~ 70 (402)
..+-.++.|+.||..|+ .+.+.|..+|.++..+..+-. .....|.++|.+.+..+-
T Consensus 136 ~~~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~P~~---~~~~~G~~ai~~~~~~~~ 192 (283)
T 3rga_A 136 DEERRKELAREHCLRINDGDVDGLLKLYSPRIRFEDPVG---SWTRTGLEALRAHATMAV 192 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEESSTT---SCEEESHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHhcCCCeEEECCCC---CCcccCHHHHHHHHHHhh
Confidence 34567889999999999 678899999999998876421 125899999999887554
No 309
>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis}
Probab=45.18 E-value=56 Score=30.07 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcC
Q 015694 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69 (402)
Q Consensus 16 g~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl 69 (402)
.+..|+.||..++ .+.+.|..+|.++..+..+-. .....|.++|.+.+..+
T Consensus 8 ~~~~v~~~~~~~~~~D~~~l~~l~a~Dav~~~P~~---~~~~~Gr~ai~~~~~~~ 59 (283)
T 3rga_A 8 RKEVALEYCRRVNAGELEGVLQLFAPDARLVDPLG---TEPVVGRAALAARLAPA 59 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEECSSS---SCCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCCC---CCCcCcHHHHHHHHHHH
Confidence 5678999999998 678899999999998876421 11578999999988754
No 310
>3ub1_A ORF13-like protein; NTF2-like, transport protein; HET: MSE; 1.80A {Clostridium perfringens}
Probab=41.52 E-value=55 Score=30.13 Aligned_cols=87 Identities=14% Similarity=0.188 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeEeeeeCCCcEEE
Q 015694 15 VGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGVIV 93 (402)
Q Consensus 15 vg~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl~~~~~~~~I~~~d~q~s~~~~vlv 93 (402)
=...|+..||.... .+.+.|..|..+...+...+.+ +- -.+|..+..-..-+..|.+
T Consensus 156 ~i~~FL~tFFk~Y~sa~~~eL~yy~~~~~~l~gL~g~------------------~~----f~~l~~~~vy~~~~~~v~a 213 (261)
T 3ub1_A 156 KITDSVSQFFKAYYEQNQTQIDYFLVDGADIKGAGQK------------------FS----FNKIDRINIYKLSDKEFLA 213 (261)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHTTBCTTCCCCCCCSC------------------CE----EEEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHhcCCCcccCCCCc------------------EE----EEEeccEEEecCCCcEEEE
Confidence 45699999999997 4667888777777655433321 00 1122222222122344555
Q ss_pred EEEEEEEeCCCcccceeEEEEee--EcCCCcEEEEe
Q 015694 94 LVTGCLTGKDNVKKKFTQTFFLA--PQDKGGYFVLN 127 (402)
Q Consensus 94 ~V~G~l~~~~~~~r~F~qtF~L~--~~~~~~y~V~n 127 (402)
.|.=.+...+ .. ..|.|.|. .+++ +|||..
T Consensus 214 ~V~v~~~d~~--t~-~~e~y~L~L~k~~~-~w~V~~ 245 (261)
T 3ub1_A 214 IVDLNVDSFG--NA-IKQGFNLTVVQEGD-KFLVKT 245 (261)
T ss_dssp EEEEEEEETT--EE-EEEEEEEEEEEETT-EEEECC
T ss_pred EEEEEEcCCC--ce-EEEEEEEEEEECCC-eEEEEe
Confidence 5544444333 22 38888554 4554 899864
No 311
>3cwz_B RAB6IP1, RAB6-interacting protein 1; RAB small GTPase, RAB-binding domain, guanosine 5' triphosphate, RUN, RPIP8, UNC-14, nesca PLAT; HET: GTP; 3.20A {Mus musculus}
Probab=39.29 E-value=28 Score=33.98 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=28.6
Q ss_pred HHHHHHHHH---------HHHHHccCcccccccccCCCeeec
Q 015694 14 VVGNAFVEQ---------YYHILHQSPGLVHRFYQDSSLLSR 46 (402)
Q Consensus 14 ~vg~~FV~~---------YY~~l~~~p~~L~~fY~~~S~l~~ 46 (402)
--|++|+|. |...|-.+++.|.+||.+.++|..
T Consensus 176 GrgRAWiRlaLne~~L~~yL~~ll~~~~~l~~~Y~~~A~L~~ 217 (384)
T 3cwz_B 176 GKARAWVRLSMEKKLLSRHLKQLLSDHELTKKLYKRYAFLRC 217 (384)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTCHHHHHHHBCTTSTTTC
T ss_pred cchhHHHHHHHhcchHHHHHHHHHhCchhhhhhcccchhhcC
Confidence 468899875 999999999999999999888763
No 312
>3g16_A Uncharacterized protein with cystatin-like fold; YP_001022489.1, protein of unknown function with cystatin-LI structural genomics; HET: MSE; 1.45A {Methylibium petroleiphilum PM1}
Probab=37.66 E-value=27 Score=29.51 Aligned_cols=56 Identities=11% Similarity=0.107 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCc-cceeccHHHHHHHHhcCC
Q 015694 13 QVVGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGS-MTTVTTMKAINDRILSLN 70 (402)
Q Consensus 13 ~~vg~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~-~~~~~g~~~I~~~i~sl~ 70 (402)
...-...|++||..++ .+.+.|..|+.++..+..+. +. .....|.++|.+.+..+.
T Consensus 9 ~~~~~~~v~ry~~A~n~gD~d~l~~l~aeD~v~~~p~--~~p~~~~~Greai~~~f~~~~ 66 (156)
T 3g16_A 9 RAAMEKVIRTYYDGCNEADEAKMIACFVPEAVHYFPA--GMYGGAFRGAAQIAHRWRTAV 66 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECBT--TSTTSCEESHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHhcCCCEEEecCC--CCCCCCccCHHHHHHHHHHHH
Confidence 5678899999999999 56778999999999887643 11 125789999999887543
No 313
>3mso_A Steroid delta-isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.57A {Pseudomonas aeruginosa}
Probab=35.90 E-value=1.7e+02 Score=23.53 Aligned_cols=52 Identities=6% Similarity=0.124 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcC
Q 015694 15 VGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69 (402)
Q Consensus 15 vg~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl 69 (402)
....+++.||..++ .+.+.|..+|.++.++.-.-. ...+.|.++|...+..+
T Consensus 10 ~~~~~~~~~~~a~~~~D~~~l~~l~a~D~v~~~P~~---~~~~~G~~~v~~~~~~~ 62 (143)
T 3mso_A 10 NAAATLAEWHGLIARRDLSGLPRLLHPDAVFRSPMA---HKPYAGAPVVSMILNTV 62 (143)
T ss_dssp HHHHHHHHHHHHHHTTCCTTGGGGEEEEEEEECSSC---SSCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCCC---CCCccCHHHHHHHHHHH
Confidence 45788999999888 577899999999998875331 12688999999988654
No 314
>3f8h_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Silicibacter SP}
Probab=35.17 E-value=1.8e+02 Score=23.48 Aligned_cols=48 Identities=2% Similarity=0.033 Sum_probs=36.3
Q ss_pred HHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcC
Q 015694 18 AFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69 (402)
Q Consensus 18 ~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl 69 (402)
+.|+.||..++ .+.+.|..+|.++..+..... ....|.++|.+.+..+
T Consensus 22 ~~v~~~~~a~n~~D~~~l~~l~a~D~v~~~~~~----~~~~G~e~i~~~~~~~ 70 (150)
T 3f8h_A 22 DTIARYFDAFNAGDTDGMLACLSEDVAHHVNEG----NIRVGKEKFAAFCAHM 70 (150)
T ss_dssp CHHHHHHHHHHHTCHHHHHTTEEEEEEEEEETT----EEEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHcCCCeEEeCCCC----cceeCHHHHHHHHHHH
Confidence 46899999998 677899999999887432211 1578999999888743
No 315
>3lyg_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE GOL; 1.61A {Colwellia psychrerythraea}
Probab=30.33 E-value=2.1e+02 Score=22.88 Aligned_cols=50 Identities=12% Similarity=0.067 Sum_probs=37.6
Q ss_pred HHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHH----HHhcCCC
Q 015694 19 FVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAIND----RILSLNY 71 (402)
Q Consensus 19 FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~----~i~sl~~ 71 (402)
-|+.-.+.|. .+=+.|...|.+++.+.|+++.+ ...|++++.. .+..||-
T Consensus 7 iVqrlW~al~AgD~D~l~adyaeDaV~i~P~sa~---vl~GR~~~r~a~~~L~~~lP~ 61 (120)
T 3lyg_A 7 IVQRGWEALGAGDFDTLVTDYVEKMIFIMPGQAD---VLKGRQAFRSALDNLGEILPP 61 (120)
T ss_dssp HHHHHHHHHHHTCHHHHGGGEEEEEEEECSSTTC---EEESHHHHHHHHTTHHHHSCT
T ss_pred HHHHHHHHHhcCCHHHHHHhcccCeEEEccCccc---eeecHHHHHHHHHHHHhhCCC
Confidence 3555566666 56678999999999999997744 4789999999 5555663
No 316
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=28.47 E-value=9.3 Score=32.16 Aligned_cols=28 Identities=21% Similarity=0.257 Sum_probs=17.1
Q ss_pred HHHHHHhhcCCCeeEEEEEEcCCCCcccEEEEEeC
Q 015694 317 TELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFE 351 (402)
Q Consensus 317 ~~L~~~F~~fG~I~~~~v~~~~~~~~~gfgFVeF~ 351 (402)
+++.++|...|.|+.... .+|||||.-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~-------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV-------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET-------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC-------CCCeeEEeeC
Confidence 455667777787765322 5799999875
No 317
>3ejv_A Uncharacterized protein with cystatin-like fold; structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.40A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} SCOP: d.17.4.28
Probab=28.28 E-value=1.5e+02 Score=25.06 Aligned_cols=72 Identities=8% Similarity=0.084 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHc-cCcccccccccCCCeeecc---C-CCCccceeccHHHHHHHHhcCC-----CCcceEEEeeeE
Q 015694 13 QVVGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRP---D-SNGSMTTVTTMKAINDRILSLN-----YEDYTAEIKTAD 82 (402)
Q Consensus 13 ~~vg~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~---~-~~~~~~~~~g~~~I~~~i~sl~-----~~~~~~~I~~~d 82 (402)
..--..++..|...++ .+.+.+..+|.++..+.+. | ..|......|.++|.+.+...- +..+.|-+.+..
T Consensus 25 ~~~I~~l~~~y~~~~D~~d~d~~~~lFt~D~~~~~~~~~Gg~~g~~~~~~Gr~aI~~~~~~~~~~~~~~~~t~H~~~n~~ 104 (179)
T 3ejv_A 25 ETIILNVLGQYTRAHDRRDPDAMAALFAPEATIEIVDAVGGASRSISRLEGRDAIRVAVRQMMAPHGYRAWSQNVVNAPI 104 (179)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEEEECGGGCCEEEEEEESHHHHHHHHHHSSCCCCTTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHhhcCCceEEEEeccCCCcCCCcceecCHHHHHHHHHHhhcccccccceEEEcCCCE
Confidence 3345678889999999 6778999999998876653 2 1122336889999999986532 334556666655
Q ss_pred ee
Q 015694 83 AQ 84 (402)
Q Consensus 83 ~q 84 (402)
.-
T Consensus 105 I~ 106 (179)
T 3ejv_A 105 IV 106 (179)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 318
>3f8x_A Putative delta-5-3-ketosteroid isomerase; structural genomics, joint center for structural genomics; HET: MSE; 1.55A {Pectobacterium atrosepticum SCRI1043}
Probab=27.30 E-value=71 Score=26.38 Aligned_cols=54 Identities=6% Similarity=0.102 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHc-cCcccccccccCCCeeeccCCCCccceeccHHHHHHHHhcC
Q 015694 13 QVVGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69 (402)
Q Consensus 13 ~~vg~~FV~~YY~~l~-~~p~~L~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~i~sl 69 (402)
....+.+++.||..++ .+.+.|..+|.++..+.-.-. ...+.|.++|...|..+
T Consensus 19 ~~~~~~~l~~f~~a~~~gD~~aL~~LlA~Dvv~~~P~~---~~~~~G~~av~~~~~~~ 73 (148)
T 3f8x_A 19 NAAVQSGLQEWHRIIAEADWERLPDLLAEDVVFSNPST---FDPYHGKGPLMVILPAV 73 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTCGGGSGGGEEEEEEEECSSC---SSCEESHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHhCCCEEEECCCC---CCCcCCHHHHHHHHHHH
Confidence 3677899999999998 567899999999988875321 12588999999988653
No 319
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=22.33 E-value=1.5e+02 Score=25.36 Aligned_cols=46 Identities=13% Similarity=0.206 Sum_probs=32.2
Q ss_pred CCHHHHHHHh--hcCCCeeEEEEEEcCCCCcccEEEEEeCCH-HHHHHHHH
Q 015694 314 TTSTELEEAF--KIFGPIKKNGVQVRSNKQGYCFGFVAFETP-GSVQSALE 361 (402)
Q Consensus 314 vte~~L~~~F--~~fG~I~~~~v~~~~~~~~~gfgFVeF~~~-~~a~~Al~ 361 (402)
.+..+|++.| +.|.+++ +.......+ +.|++.|.|.+. .....|+.
T Consensus 33 ~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecCChHHHHHHHH
Confidence 4557899977 9999987 455555555 789999999864 33444443
No 320
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=20.45 E-value=1.5e+02 Score=21.04 Aligned_cols=58 Identities=9% Similarity=0.037 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHhhcCCCe-----eEEEEEEcCCCCcccEEEEEeCCHHHHHHHHHhC-CCccCCEEEEEEEe
Q 015694 312 FTTTSTELEEAFKIFGPI-----KKNGVQVRSNKQGYCFGFVAFETPGSVQSALEVL-SLISLSLIIKIVLG 377 (402)
Q Consensus 312 ~~vte~~L~~~F~~fG~I-----~~~~v~~~~~~~~~gfgFVeF~~~~~a~~Al~~~-~~~i~Gr~i~V~~~ 377 (402)
..+...+|..++..-+.| -.+.+ ...|.||+-.. ..+..+++.+ +..++|++++|..+
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i-------~d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITI-------MDNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEE-------CSSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEEC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEE-------eCCcEEEEECH-HHHHHHHHHhccccCcCceEEEEEC
Confidence 346667777777755544 33333 23478888754 4567788887 88899999988764
Done!