BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015697
(402 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
Length = 437
Score = 457 bits (1176), Expect = e-129, Method: Compositional matrix adjust.
Identities = 210/369 (56%), Positives = 277/369 (75%), Gaps = 1/369 (0%)
Query: 35 SADLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDP 94
++ +L L ++IP++Q R+K + + G +G ITVDM+ GGMRGM GL++ETS+LDP
Sbjct: 1 ASSTNLKDILADLIPKEQARIKTFRQQHGNTAVGQITVDMMYGGMRGMKGLVYETSVLDP 60
Query: 95 DEGIRFRGLSIPECQKLLPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATV 154
DEGIRFRG SIPECQK+LP AK TG++P++EQV LSKE RA +
Sbjct: 61 DEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAAL 120
Query: 155 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIA 214
P +V +D P HPM+Q ++ + AL +S F AY +GIH++KYWE YED ++LIA
Sbjct: 121 PSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCMDLIA 180
Query: 215 RVPVVAAYVYQRIYKDGKIIPKDDS-LDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEG 273
++P VAA +Y+ +Y++G I DS LD+ NF++MLG+ D + ELMRLY+TIHSDHEG
Sbjct: 181 KLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEG 240
Query: 274 GNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQ 333
GNVSAHT HLV SALSDPYLSFAAA+NGLAGPLHGLANQEVL+W+ + E G++V+ E+
Sbjct: 241 GNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEK 300
Query: 334 LKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPI 393
L+DY+W TLNSG+VVPG+GH VLRKTDPRYTCQREFALKHLP DP+F+LV++L+++VP +
Sbjct: 301 LRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPHDPMFKLVAQLYKIVPNV 360
Query: 394 LTKLGKVSN 402
L + GK N
Sbjct: 361 LLEQGKAKN 369
>pdb|4CTS|A Chain A, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|4CTS|B Chain B, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|1CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
pdb|3ENJ|A Chain A, Structure Of Pig Heart Citrate Synthase At 1.78 A
Resolution
Length = 437
Score = 456 bits (1173), Expect = e-128, Method: Compositional matrix adjust.
Identities = 210/369 (56%), Positives = 277/369 (75%), Gaps = 1/369 (0%)
Query: 35 SADLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDP 94
++ +L L ++IP++Q R+K + + G +G ITVDM+ GGMRGM GL++ETS+LDP
Sbjct: 1 ASSTNLKDILADLIPKEQARIKTFRQQHGNTVVGQITVDMMYGGMRGMKGLVYETSVLDP 60
Query: 95 DEGIRFRGLSIPECQKLLPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATV 154
DEGIRFRG SIPECQK+LP AK TG++P++EQV LSKE RA +
Sbjct: 61 DEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAAL 120
Query: 155 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIA 214
P +V +D P HPM+Q ++ + AL +S F AY +GIH++KYWE YED ++LIA
Sbjct: 121 PSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCMDLIA 180
Query: 215 RVPVVAAYVYQRIYKDGKIIPKDDS-LDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEG 273
++P VAA +Y+ +Y++G I DS LD+ NF++MLG+ D + ELMRLY+TIHSDHEG
Sbjct: 181 KLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEG 240
Query: 274 GNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQ 333
GNVSAHT HLV SALSDPYLSFAAA+NGLAGPLHGLANQEVL+W+ + E G++V+ E+
Sbjct: 241 GNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEK 300
Query: 334 LKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPI 393
L+DY+W TLNSG+VVPG+GH VLRKTDPRYTCQREFALKHLP DP+F+LV++L+++VP +
Sbjct: 301 LRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPHDPMFKLVAQLYKIVPNV 360
Query: 394 LTKLGKVSN 402
L + GK N
Sbjct: 361 LLEQGKAKN 369
>pdb|6CSC|A Chain A, Chicken Citrate Synthase Complex With
Trifluoroacetonyl-Coa And Citrate
pdb|6CSC|B Chain B, Chicken Citrate Synthase Complex With
Trifluoroacetonyl-Coa And Citrate
pdb|1AL6|A Chain A, Chicken Citrate Synthase Complex With N-Hydroxyamido-Coa
And Oxaloacetate
Length = 437
Score = 451 bits (1161), Expect = e-127, Method: Compositional matrix adjust.
Identities = 208/369 (56%), Positives = 272/369 (73%), Gaps = 1/369 (0%)
Query: 35 SADLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDP 94
++ +L L +IP++Q R+K + + G +G ITVDM GGMRGM GL++ETS+LDP
Sbjct: 1 ASSTNLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDP 60
Query: 95 DEGIRFRGLSIPECQKLLPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATV 154
DEGIRFRG SIPECQKLLP A TG++P+ EQV +SKE RA +
Sbjct: 61 DEGIRFRGFSIPECQKLLPKAGGGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAAL 120
Query: 155 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIA 214
P +V +D P HPM+Q ++ + AL +S F AY +GI+++KYWE YED+++LIA
Sbjct: 121 PSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLIA 180
Query: 215 RVPVVAAYVYQRIYKDGKIIPKDDS-LDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEG 273
++P VAA +Y+ +Y+ G I DS LD+ NF++MLG+ DP+ ELMRLY+TIHSDHEG
Sbjct: 181 KLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEG 240
Query: 274 GNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQ 333
GNVSAHT HLV SALSDPYLSFAAA+NGLAGPLHGLANQEVLLW+ + + G + + E+
Sbjct: 241 GNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEK 300
Query: 334 LKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPI 393
L+DY+W TLNSG+VVPG+GH VLRKTDPRYTCQREFALKHLP DP+F+LV++L+++VP +
Sbjct: 301 LRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNV 360
Query: 394 LTKLGKVSN 402
L + GK N
Sbjct: 361 LLEQGKAKN 369
>pdb|1AMZ|A Chain A, Chicken Citrate Synthase Complex With Nitromethylde-coa
And Malate
pdb|1CSH|A Chain A, A Very Short Hydrogen Bond Provides Only Moderate
Stabilization Of An Enzyme: Inhibitor Complex Of Citrate
Synthase
pdb|1CSI|A Chain A, A Very Short Hydrogen Bond Provides Only Moderate
Stabilization Of An Enzyme: Inhibitor Complex Of Citrate
Synthase
pdb|1CSR|A Chain A, Alpha-Fluoro Acid And Alpha-Fluoro Amide Analogs Of
Acetyl- Coa As Inhibitors Of Of Citrate Synthase: Effect
Of Pka Matching On Binding Affinity And Hydrogen Bond
Length
pdb|1CSS|A Chain A, Alpha-Fluoro Acid And Alpha-Fluoro Amide Analogs Of
Acetyl-Coa As Inhibitors Of Of Citrate Synthase: Effect
Of Pka Matching On Binding Affinity And Hydrogen Bond
Length
Length = 435
Score = 451 bits (1159), Expect = e-127, Method: Compositional matrix adjust.
Identities = 208/365 (56%), Positives = 270/365 (73%), Gaps = 1/365 (0%)
Query: 39 DLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI 98
+L L +IP++Q R+K + + G +G ITVDM GGMRGM GL++ETS+LDPDEGI
Sbjct: 3 NLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDEGI 62
Query: 99 RFRGLSIPECQKLLPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATVPDYV 158
RFRG SIPECQKLLP A TG++P+ EQV +SKE RA +P +V
Sbjct: 63 RFRGFSIPECQKLLPKAGGGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPSHV 122
Query: 159 YKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPV 218
+D P HPM+Q ++ + AL +S F AY +GI+++KYWE YED+++LIA++P
Sbjct: 123 VTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLIAKLPC 182
Query: 219 VAAYVYQRIYKDGKIIPKDDS-LDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVS 277
VAA +Y+ +Y+ G I DS LD+ NF++MLG+ DP+ ELMRLY+TIHSDHEGGNVS
Sbjct: 183 VAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGNVS 242
Query: 278 AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDY 337
AHT HLV SALSDPYLSFAAA+NGLAGPLHGLANQEVLLW+ + + G + + E+L+DY
Sbjct: 243 AHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDY 302
Query: 338 VWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKL 397
+W TLNSG+VVPG+GH VLRKTDPRYTCQREFALKHLP DP+F+LV++L+++VP +L +
Sbjct: 303 IWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQ 362
Query: 398 GKVSN 402
GK N
Sbjct: 363 GKAKN 367
>pdb|1CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With D-
And L-Malate: Mechanistic Implications
pdb|2CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|3CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|4CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|5CTS|A Chain A, Proposed Mechanism For The Condensation Reaction Of
Citrate Synthase. 1.9-Angstroms Structure Of The Ternary
Complex With Oxaloacetate And Carboxymethyl Coenzyme A
pdb|6CTS|A Chain A, Proposed Mechanism For The Condensation Reaction Of
Citrate Synthase. 1.9-Angstroms Structure Of The Ternary
Complex With Oxaloacetate And Carboxymethyl Coenzyme A
pdb|5CSC|A Chain A, Structure Of An Open Form Of Chicken Heart Citrate
Synthase At 2.8 Angstroms Resolution
Length = 433
Score = 429 bits (1102), Expect = e-120, Method: Compositional matrix adjust.
Identities = 202/369 (54%), Positives = 260/369 (70%), Gaps = 1/369 (0%)
Query: 35 SADLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDP 94
++ +L L +IP++Q R+K + + G LG ITVDM GGMRGM GL++ETS+LDP
Sbjct: 1 ASSTNLKDVLAALIPKEQARIKTFRQQHGGTALGQITVDMSYGGMRGMKGLVYETSVLDP 60
Query: 95 DEGIRFRGLSIPECQKLLPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATV 154
DEGIRFRG SIPECQKLLP TG++P+ QV LSKE RA +
Sbjct: 61 DEGIRFRGFSIPECQKLLPKGGXGGEPLPEGLFWLLVTGQIPTGAQVSWLSKEWAKRAAL 120
Query: 155 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIA 214
P +V +D P HPM+Q ++ + AL +S F AY +GI ++KYWE YE +++LIA
Sbjct: 121 PSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGILRTKYWEMVYESAMDLIA 180
Query: 215 RVPVVAAYVYQRIYKDGKIIPKDDS-LDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEG 273
++P VAA +Y+ +Y+ G I DS LD+ NF++MLG+ D + ELMRLY+TIHSDHEG
Sbjct: 181 KLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEG 240
Query: 274 GNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQ 333
GNVSAHT HLV SALSDPYLSFAAA+NGLAGPLHGLANQEVL W+ +
Sbjct: 241 GNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLGWLAQLQKAXXXAGADAS 300
Query: 334 LKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPI 393
L+DY+W TLNSG+VVPG+GH VLRKTDPRYTCQREFALKHLP DP+F+LV++L+++VP +
Sbjct: 301 LRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPGDPMFKLVAQLYKIVPNV 360
Query: 394 LTKLGKVSN 402
L + G +N
Sbjct: 361 LLEQGAAAN 369
>pdb|5CSC|B Chain B, Structure Of An Open Form Of Chicken Heart Citrate
Synthase At 2.8 Angstroms Resolution
Length = 429
Score = 429 bits (1102), Expect = e-120, Method: Compositional matrix adjust.
Identities = 203/369 (55%), Positives = 263/369 (71%), Gaps = 5/369 (1%)
Query: 35 SADLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDP 94
++ +L L +IP++Q R+K + + G LG ITVDM GGMRGM GL++ETS+LDP
Sbjct: 1 ASSTNLKDVLAALIPKEQARIKTFRQQHGGTALGQITVDMSYGGMRGMKGLVYETSVLDP 60
Query: 95 DEGIRFRGLSIPECQKLLPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATV 154
DEGIRFRG SIPECQKLLP TG++P+ QV LSKE RA +
Sbjct: 61 DEGIRFRGFSIPECQKLLPKGG-GGEPLPEGLFWLLVTGQIPTGAQVSWLSKEWAKRAAL 119
Query: 155 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIA 214
P +V +D P HPM+Q ++ + AL +S F AY +GI ++KYWE YE +++LIA
Sbjct: 120 PSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGILRTKYWEMVYESAMDLIA 179
Query: 215 RVPVVAAYVYQRIYKDGKIIPKDDS-LDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEG 273
++P VAA +Y+ +Y+ G I DS LD+ NF++MLG+ D + ELMRLY+TIHSDHEG
Sbjct: 180 KLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEG 239
Query: 274 GNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQ 333
GNVSAHT HLV SALSDPYLSFAAA+NGLAGPLHGLANQEVL W+ + G + +
Sbjct: 240 GNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLGWLAQLQKAAGADAS--- 296
Query: 334 LKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPI 393
L+DY+W TLNSG+VVPG+GH VLRKTDPRYTCQREFALKHLP DP+F+LV++L+++VP +
Sbjct: 297 LRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPGDPMFKLVAQLYKIVPNV 356
Query: 394 LTKLGKVSN 402
L + G +N
Sbjct: 357 LLEQGAAAN 365
>pdb|1VGP|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From
Sulfolbus Tokodaii Strain7
Length = 373
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 120/240 (50%), Gaps = 23/240 (9%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 192
GK+P++E+++ ++LR+ +PD++ K + + A PM + V L
Sbjct: 53 GKLPNREELNWFQEKLREERYLPDFIIKFLREVRKDAQPMDILRTAVSLL---------- 102
Query: 193 EKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF 252
GI SK E T + LI++ P + A Y R+ K II D L + NF +ML
Sbjct: 103 --GIEDSKNDERTDIKGIKLISKFPTIVA-NYARLRKGLDIIEPDPKLSHSENFLYMLYG 159
Query: 253 DDPKMLE--LMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLA 310
D P ++ M + + +H DHE N S +VAS SD Y S A ++ L GPLHG A
Sbjct: 160 DRPNEIKSKAMDVTLILHIDHEM-NASTFASLVVASTFSDLYSSIVAGISALKGPLHGGA 218
Query: 311 NQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFA 370
N E L K E G + E++ DY+ L++ + + GFGH V + DPR +++A
Sbjct: 219 NYEALKMFK----EIG---SPEKVNDYILNRLSNKQRIMGFGHRVYKTYDPRARILKQYA 271
>pdb|3MSU|A Chain A, Crystal Structure Of Citrate Synthase From Francisella
Tular
pdb|3MSU|B Chain B, Crystal Structure Of Citrate Synthase From Francisella
Tular
Length = 427
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 128/271 (47%), Gaps = 32/271 (11%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 192
G++P+ EQV +E+ ++ V ++V AI A+P HPM+ +GV L +
Sbjct: 101 GELPTDEQVKSFRQEIINKMPVCEHVKAAIAAMPQHTHPMSSLIAGVNVLAAEH------ 154
Query: 193 EKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF 252
IH + E E + N++A++ +AA Y+ + + PK + Y NF +M+
Sbjct: 155 ---IHNGQK-ESQDEVAKNIVAKIATIAAMAYRHNHGKKFLEPKME-YGYAENFLYMMFA 209
Query: 253 DD----PKMLEL--MRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPL 306
DD P L + M +H+DHE N S T L S + PY + A + L GP
Sbjct: 210 DDESYKPDELHIKAMDTIFMLHADHE-QNASTSTVRLSGSTGNSPYAAIIAGITALWGPA 268
Query: 307 HGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGK--VVPGFGHGVLRKTDPRYT 364
HG AN+ VL ++ E G +TE + Y+ K + + GFGH V + TDPR T
Sbjct: 269 HGGANEAVL----KMLSEIG---STENIDKYIAKAKDKDDPFRLMGFGHRVYKNTDPRAT 321
Query: 365 -----CQREFALKHLPDDPLFQLVSKLFEVV 390
C+ A D+PL + KL E+
Sbjct: 322 AMKKNCEEILAKLGHSDNPLLTVAKKLEEIA 352
>pdb|2H12|A Chain A, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|B Chain B, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|C Chain C, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|D Chain D, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|E Chain E, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|F Chain F, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
Length = 436
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 141/339 (41%), Gaps = 41/339 (12%)
Query: 65 AQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDXXXXXX 124
AQLG T D G + + +D D+G+ + P A+
Sbjct: 43 AQLGVFTFDPGYGETAACNS---KITFIDGDKGVLL--------HRGYPIAQLAENASYE 91
Query: 125 XXXXXXXTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQV 184
G++P+K Q D + L + + + + + AHPM V AL
Sbjct: 92 EVIYLLLNGELPNKAQYDTFTNTLTNHTLLHEQIRNFFNGFRRDAHPMAILCGTVGALS- 150
Query: 185 QSEFQEAYEKGIHKSKYWEPTYED--SLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDY 242
+ + +A + I P D ++ LIA++P +AA+ Y+ + I P++D L+Y
Sbjct: 151 -AFYPDANDIAI-------PANRDLAAMRLIAKIPTIAAWAYKYTQGEAFIYPRND-LNY 201
Query: 243 GGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSF 295
NF M+ +P + M + +H+DHE N S T L S ++P+
Sbjct: 202 AENFLSMMFARMSEPYKVNPVLARAMNRILILHADHEQ-NASTSTVRLAGSTGANPFACI 260
Query: 296 AAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGV 355
AA + L GP HG AN+ VL + + + Q+KD NSG + GFGH V
Sbjct: 261 AAGIAALWGPAHGGANEAVLKMLARIGKKENIPAFIAQVKDK-----NSGVKLMGFGHRV 315
Query: 356 LRKTDPRY-----TCQREFALKHLPDDPLFQLVSKLFEV 389
+ DPR TC + DDPL L +L ++
Sbjct: 316 YKNFDPRAKIMQQTCHEVLTELGIKDDPLLDLAVELEKI 354
>pdb|1AJ8|A Chain A, Citrate Synthase From Pyrococcus Furiosus
pdb|1AJ8|B Chain B, Citrate Synthase From Pyrococcus Furiosus
Length = 371
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 143/317 (45%), Gaps = 43/317 (13%)
Query: 92 LDPDEG-IRFRGLSIPECQKLLPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRD 150
+D EG + +RG S+ E +L GK+PS +++ KEL
Sbjct: 18 IDGKEGKLYYRGYSVEELAEL---------STFEEVVYLLWWGKLPSLSELENFKKELAK 68
Query: 151 RATVPDYVYKAIDALPVTAHPMTQFASGVMAL-------QVQSEFQEAYEKGIHKSKYWE 203
+P V + ++ALP HPM + + L + +E Y GI
Sbjct: 69 SRGLPKEVIEIMEALPKNTHPMGALRTIISYLGNIDDSGDIPVTPEEVYRIGI------- 121
Query: 204 PTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHML-GFDDPKMLE-LM 261
++ A++P + A Y RI + +P + L + NF +ML G + PK E M
Sbjct: 122 -------SVTAKIPTIVANWY-RIKNGLEYVPPKEKLSHAANFLYMLHGEEPPKEWEKAM 173
Query: 262 RLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSV 321
+ + ++++HE N S V S LSD Y + A + L GP+HG A +E
Sbjct: 174 DVALILYAEHE-INASTLAVMTVGSTLSDYYSAILAGIGALKGPIHGGAVEE-------A 225
Query: 322 VDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQ 381
+ + E + E+++++ +K L + + G GH V + DPR +++A K L D LF+
Sbjct: 226 IKQFMEIGSPEKVEEWFFKALQQKRKIMGAGHRVYKTYDPRARIFKKYASK-LGDKKLFE 284
Query: 382 LVSKLFEVVPPILTKLG 398
+ +L +V L+K G
Sbjct: 285 IAERLERLVEEYLSKKG 301
>pdb|1IOM|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|B Chain B, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|C Chain C, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|D Chain D, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
Length = 377
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 117/234 (50%), Gaps = 23/234 (9%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQ--E 190
G++P +++++ S L R +P ++ ++ PV+AHPM+ + V SEF +
Sbjct: 53 GRLPRRQELEEFSAALARRRALPAHLLESFKRYPVSAHPMSFLRTAV------SEFGMLD 106
Query: 191 AYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHML 250
E I + E YE L+LIA+ + A +R+ + + IP + L + NF +M
Sbjct: 107 PTEGDISR----EALYEKGLDLIAKFATIVA-ANKRLKEGKEPIPPREDLSHAANFLYMA 161
Query: 251 -GFD-DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHG 308
G + P+ LM + +H++H G N S T S +D Y + AA+ L GP HG
Sbjct: 162 NGVEPSPEQARLMDAALILHAEH-GFNASTFTAIAAFSTETDLYSAITAAVASLKGPRHG 220
Query: 309 LANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPR 362
AN+ V+ ++ E G T E+ +++V + L + + G GH V + DPR
Sbjct: 221 GANEAVM----RMIQEIG---TPERAREWVREKLAKKERIMGMGHRVYKAFDPR 267
>pdb|2IBP|A Chain A, Crystal Structure Of Citrate Synthase From Pyrobaculum
Aerophilum
pdb|2IBP|B Chain B, Crystal Structure Of Citrate Synthase From Pyrobaculum
Aerophilum
Length = 409
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 142/321 (44%), Gaps = 40/321 (12%)
Query: 76 IGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDXXXXXXXXXXXXXTGKV 135
I + G G+LW +RG I E +L G++
Sbjct: 36 ISDIDGEKGILW------------YRGYRIEELARL---------STYEEVSYLILYGRL 74
Query: 136 PSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSE----FQEA 191
P+K +++ ++ + + I L AHPM + V A E EA
Sbjct: 75 PTKRELEDYINRMKKYRELHPATVEVIRNL-AKAHPMFALEAAVAAEGAYDEDNQKLIEA 133
Query: 192 YEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLG 251
G +K++ E Y + L+A++P + AY Y R + +++ D L + NF +M+
Sbjct: 134 LSVGRYKAEEKELAYRIAEKLVAKMPTIVAYHY-RFSRGLEVVRPRDDLGHAANFLYMMF 192
Query: 252 FDDPKMLEL--MRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGL 309
+P L + LY+ +H+DHE S H+VAS LSD Y S AAA+ L GPLHG
Sbjct: 193 GREPDPLASRGIDLYLILHADHEV-PASTFAAHVVASTLSDLYSSVAAAIAALKGPLHGG 251
Query: 310 ANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREF 369
AN+ + +++ + E G +++ + K G + G GH V + DPR +EF
Sbjct: 252 ANE---MAVRNYL-EIGTPAKAKEIVEAATKP--GGPKLMGVGHRVYKAYDPRAKIFKEF 305
Query: 370 ALKHLPD--DP--LFQLVSKL 386
+ ++ DP LF + S +
Sbjct: 306 SRDYVAKFGDPQNLFAIASAI 326
>pdb|2P2W|A Chain A, Crystal Structure Of Citrate Synthase From Thermotoga
Maritima Msb8
Length = 367
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 125/263 (47%), Gaps = 32/263 (12%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 192
GK+P+K +++ +++ D +P + LP H + V+ + +
Sbjct: 52 GKLPTKSELEEFKRKMADYRELPAEALGILYHLPKNLHYID-----VLKIFLS------- 99
Query: 193 EKGIHKSKYW--EPTYEDSLNLIARVPVVAAYVYQRIYKDGK--IIPKDDSLDYGGNFSH 248
IH S E E ++ + + P + AY Y+ Y GK I P+ D L + NF +
Sbjct: 100 ---IHGSMDGNDEDLREKAIRVASVFPTILAYYYR--YSKGKELIRPRKD-LSHVENFYY 153
Query: 249 ML-GFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLH 307
M+ G + K+ L ++ + + N S ++AS LSD Y AL L GPLH
Sbjct: 154 MMFGERNEKIRLLESAFILLME--QDINASTFAALVIASTLSDLYSCIVGALGALKGPLH 211
Query: 308 GLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQR 367
G A+++V +++E G + ++++++V K L + + GFGH V + DPR +
Sbjct: 212 GGASEKV----PPMLEEIG---SEDRVEEFVQKCLKEKRKIMGFGHRVYKTYDPRAVFLK 264
Query: 368 EFALKHLPDDPLFQLVSKLFEVV 390
+H PD LF++ SKL E +
Sbjct: 265 RVLQEHFPDSKLFRIASKLEEYI 287
>pdb|3O8J|A Chain A, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|B Chain B, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|C Chain C, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|D Chain D, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|E Chain E, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|F Chain F, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|G Chain G, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|H Chain H, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|I Chain I, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|J Chain J, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
Length = 404
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 114/244 (46%), Gaps = 26/244 (10%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 192
GK+P++++++ +L+ +P V ++ALP +HPM +GV AL +E +
Sbjct: 83 GKLPTRDELNAYKSKLKALRGLPANVRTVLEALPAASHPMDVMRTGVSALGCTLPEKEGH 142
Query: 193 EKGIHKSKYWEPTYEDSLNLIAR----VPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSH 248
T + ++ + + + Y Y + +I P+ D GG+F H
Sbjct: 143 ------------TVSGARDIADKLLASLSSILLYWYHYSHNGERIQPETDDDSIGGHFLH 190
Query: 249 MLGFDDPKML--ELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPL 306
+L + P + M + + ++++HE N S T ++A SD Y + A+ L GP
Sbjct: 191 LLHGEKPTQSWEKAMHISLVLYAEHE-FNASTFTSRVIAGTGSDVYSAIIGAIGALRGPK 249
Query: 307 HGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQ 366
HG AN EV L I+ + T ++ + + K + + +VV GFGH V DPR+
Sbjct: 250 HGGAN-EVSLEIQQRYE------TPDEAEADIRKRVENKEVVIGFGHPVYTIADPRHQVI 302
Query: 367 REFA 370
+ A
Sbjct: 303 KRVA 306
>pdb|1A59|A Chain A, Cold-Active Citrate Synthase
Length = 378
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 105/233 (45%), Gaps = 14/233 (6%)
Query: 134 KVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYE 193
++P+ ++ R + + V AID L HPM + V L +
Sbjct: 56 ELPNDSELKAFVNFERSHRKLDENVKGAIDLLSTACHPMDVARTAVSVLGAN------HA 109
Query: 194 KGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD 253
+ S E E +++L+A P V AY +R + I P++D LDY NF M +
Sbjct: 110 RAQDSSP--EANLEKAMSLLATFPSVVAYDQRRRRGEELIEPRED-LDYSANFLWMTFGE 166
Query: 254 D--PKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLAN 311
+ P+++E + + ++++H N S T ++ S L+D + + A+ L GPLHG AN
Sbjct: 167 EAAPEVVEAFNVSMILYAEH-SFNASTFTARVITSTLADLHSAVTGAIGALKGPLHGGAN 225
Query: 312 QEVLLWIKSVVDECGENVTTEQLKDYVW--KTLNSGKVVPGFGHGVLRKTDPR 362
+ V+ + + E++ + W L K V GFGH V + D R
Sbjct: 226 EAVMHTFEEIGIRKDESLDEAATRSKAWMVDALAQKKKVMGFGHRVYKNGDSR 278
>pdb|3L96|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli
pdb|3L96|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli
pdb|3L97|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With S-
Carboxymethyl-Coa
pdb|3L97|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With S-
Carboxymethyl-Coa
pdb|3L98|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Nadh
pdb|3L98|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Nadh
pdb|3L99|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Oxaloacetate
pdb|3L99|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Oxaloacetate
Length = 426
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 140/331 (42%), Gaps = 45/331 (13%)
Query: 58 VKSELGKAQLGNITVDMVIGGMRGM----------TGLLWETSLLDPDEGIRF-RGLSIP 106
V+ ++ K LG +D+ G +G+ T + + +D DEGI RG I
Sbjct: 15 VELDVLKGTLGQDVIDIRTLGSKGVFTFDPGFTSTTSCESKITFIDGDEGILLHRGFPID 74
Query: 107 ECQKLLPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALP 166
+ G+ P++EQ D + + + + + A
Sbjct: 75 QLA---------TDSNYLEVCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFR 125
Query: 167 VTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQR 226
+HPM AL + + ++ + ++ ++ E + L++++P +AA Y+
Sbjct: 126 RDSHPMAVMCGITGALA--AFYHDSLD--VNNPRHREIA---AFRLLSKMPTMAAMCYKY 178
Query: 227 IYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAH 279
+ P++D L Y GNF +M+ +P + M + +H+DHE N S
Sbjct: 179 SIGQPFVYPRND-LSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHEQ-NASTS 236
Query: 280 TGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYV- 338
T S+ ++P+ AA + L GP HG AN+ L +++E G+ E + ++V
Sbjct: 237 TVRTAGSSGANPFACIAAGIASLWGPAHGGANEAAL----KMLEEIGKK---ENIPEFVR 289
Query: 339 -WKTLNSGKVVPGFGHGVLRKTDPRYTCQRE 368
K N + GFGH V + DPR T RE
Sbjct: 290 RAKDKNDSFRLMGFGHRVYKNYDPRATVMRE 320
>pdb|1O7X|A Chain A, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|B Chain B, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|C Chain C, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|D Chain D, Citrate Synthase From Sulfolobus Solfataricus
Length = 377
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 138/326 (42%), Gaps = 36/326 (11%)
Query: 72 VDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDXXXXXXXXXXXX 130
+ +V G+ + + + +D ++GI R+RG +I +
Sbjct: 1 MSVVSKGLENVIIKVTNLTFIDGEKGILRYRGYNIEDLVNY---------GSYEETIYLM 51
Query: 131 XTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQE 190
GK+P+K++++ L +L + VP V I +P A + G AL
Sbjct: 52 LYGKLPTKKELNDLKAKLNEEYEVPQEVLDTIYLMPKEADAIGLLEVGTAALA------- 104
Query: 191 AYEKGIHKSKYW-EPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHM 249
I K+ W E E ++++IA++ + A VY+R + IP + S + +F
Sbjct: 105 ----SIDKNFKWKENDKEKAISIIAKMATLVANVYRRKEGNKPRIP-EPSDSFAKSFLLA 159
Query: 250 LGFDDPKMLEL--MRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLH 307
+P E+ M + +++DHE S + AS LSD Y S AAL L GPLH
Sbjct: 160 SFAREPTTDEINAMDKALILYTDHEVP-ASTTAALVAASTLSDMYSSLTAALAALKGPLH 218
Query: 308 GLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQR 367
G A +E K ++ N D K +N + GFGH V + DPR +
Sbjct: 219 GGAAEEAF---KQFIEIGDPNRVQNWFND---KVVNQKNRLMGFGHRVYKTYDPRAKIFK 272
Query: 368 EFALKHLPDDP----LFQLVSKLFEV 389
+ AL + + F++ KL E+
Sbjct: 273 KLALTLIERNADARRYFEIAQKLEEL 298
>pdb|3TQG|A Chain A, Structure Of The 2-Methylcitrate Synthase (Prpc) From
Coxiella Burnetii
pdb|3TQG|B Chain B, Structure Of The 2-Methylcitrate Synthase (Prpc) From
Coxiella Burnetii
Length = 375
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 110/245 (44%), Gaps = 21/245 (8%)
Query: 134 KVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYE 193
K+P+K ++D +K+L + ++P + ++ +P ++HP +G L E + +E
Sbjct: 58 KLPTKSELDAYTKKLVNLRSLPPALKDTLERIPASSHPXDVXRTGCSXLG-NLEPENGFE 116
Query: 194 KGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD 253
E D L+A P + Y Y + +I + D L G F H+L
Sbjct: 117 N--------EQNIAD--RLVAIFPAIQCYWYHYSHHGKRIDTELDDLTLAGYFLHLLLGK 166
Query: 254 DPKM--LELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLAN 311
++ + ++++HE N S + ++ LSD Y + AA+ L GPLHG AN
Sbjct: 167 KAAQXAIDCXNASLILYAEHEF-NASTFAARVCSATLSDIYSAVTAAIATLRGPLHGGAN 225
Query: 312 QEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFAL 371
+ + D T + + + L + +++ GFGH V R+ DPR + +A
Sbjct: 226 E-------AAXDLIXLYKTPSEAIAGIKRKLANKELIXGFGHAVYRERDPRNAIIKSWAQ 278
Query: 372 KHLPD 376
K P+
Sbjct: 279 KLAPN 283
>pdb|2C6X|A Chain A, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|B Chain B, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|C Chain C, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|D Chain D, Structure Of Bacillus Subtilis Citrate Synthase
Length = 363
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 28/242 (11%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 192
GK+PS E++ +L +P+++ + I +LP M+ + V AL
Sbjct: 51 GKLPSTEELQVFKDKLAAERNLPEHIERLIQSLPNNMDDMSVLRTVVSALG--------- 101
Query: 193 EKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGG--NFSHML 250
+ + P E+++ LIA P + AY + + I P S YG N+ +ML
Sbjct: 102 ----ENTYTFHPKTEEAIRLIAITPSIIAYRKRWTRGEQAIAP---SSQYGHVENYYYML 154
Query: 251 GFDDPKMLE--LMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHG 308
+ P + + Y+ + ++H G N S + + S SD + AAL + GPLHG
Sbjct: 155 TGEQPSEAKKKALETYMILATEH-GMNASTFSARVTLSTESDLVSAVTAALGTMKGPLHG 213
Query: 309 LANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQRE 368
A V ++++ GE E + Y+ + L G+ + GFGH V + DPR R+
Sbjct: 214 GAPSAV----TKMLEDIGEK---EHAEAYLKEKLEKGERLMGFGHRVYKTKDPRAEALRQ 266
Query: 369 FA 370
A
Sbjct: 267 KA 268
>pdb|1K3P|A Chain A, Three Dimensional Structure Analysis Of The Type Ii
Citrate From E.Coli
pdb|1K3P|B Chain B, Three Dimensional Structure Analysis Of The Type Ii
Citrate From E.Coli
Length = 426
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 110/246 (44%), Gaps = 25/246 (10%)
Query: 132 TGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEA 191
G+ P++EQ D + + + + + A +HPM AL + + ++
Sbjct: 91 NGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALA--AFYHDS 148
Query: 192 YEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLG 251
+ ++ ++ E + L++++P +AA Y+ + P++D L Y GNF +M+
Sbjct: 149 LD--VNNPRHREIA---AFRLLSKMPTMAAMCYKYSIGQPFVYPRND-LSYAGNFLNMMF 202
Query: 252 FD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAG 304
+P + M + +H+DHE N S T S+ ++P+ AA + L G
Sbjct: 203 STPCEPYEVNPILERAMDRILILHADHEQ-NASTSTVRTAGSSGANPFACIAAGIASLWG 261
Query: 305 PLHGLANQEVLLWIKSVVDECGENVTTEQLKDYV--WKTLNSGKVVPGFGHGVLRKTDPR 362
P HG AN+ L ++ + + + + ++ K N + GFGH V + DPR
Sbjct: 262 PAHGGANEAALKMLEEI-------SSVKHIPEFFRRAKDKNDSFRLMGFGHRVYKNYDPR 314
Query: 363 YTCQRE 368
T RE
Sbjct: 315 ATVMRE 320
>pdb|1NXE|A Chain A, A Novel Nadh Allosteric Regulator Site Is Found On The
Surfa Hexameric Type Ii Phe383ala Variant Of Citrate
Synthase
pdb|1NXE|B Chain B, A Novel Nadh Allosteric Regulator Site Is Found On The
Surfa Hexameric Type Ii Phe383ala Variant Of Citrate
Synthase
pdb|1NXG|A Chain A, The F383a Variant Of Type Ii Citrate Synthase Complexed
With
pdb|1NXG|B Chain B, The F383a Variant Of Type Ii Citrate Synthase Complexed
With
Length = 427
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 110/246 (44%), Gaps = 25/246 (10%)
Query: 132 TGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEA 191
G+ P++EQ D + + + + + A +HPM AL + + ++
Sbjct: 92 NGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALA--AFYHDS 149
Query: 192 YEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLG 251
+ ++ ++ E + L++++P +AA Y+ + P++D L Y GNF +M+
Sbjct: 150 LD--VNNPRHREIA---AFRLLSKMPTMAAMCYKYSIGQPFVYPRND-LSYAGNFLNMMF 203
Query: 252 FD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAG 304
+P + M + +H+DHE N S T S+ ++P+ AA + L G
Sbjct: 204 STPCEPYEVNPILERAMDRILILHADHEQ-NASTSTVRTAGSSGANPFACIAAGIASLWG 262
Query: 305 PLHGLANQEVLLWIKSVVDECGENVTTEQLKDYV--WKTLNSGKVVPGFGHGVLRKTDPR 362
P HG AN+ L ++ + + + + ++ K N + GFGH V + DPR
Sbjct: 263 PAHGGANEAALKMLEEI-------SSVKHIPEFFRRAKDKNDSFRLMGFGHRVYKNYDPR 315
Query: 363 YTCQRE 368
T RE
Sbjct: 316 ATVMRE 321
>pdb|4E6Y|A Chain A, Type Ii Citrate Synthase From Vibrio Vulnificus
Length = 432
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 111/269 (41%), Gaps = 33/269 (12%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 192
G+ P++EQ + + V + + AHP V AL
Sbjct: 96 GEAPTREQYEKFKTTVTRHTXVHEQIASFFHGFRRDAHPXAVXCGVVGALAAFYHDSLDI 155
Query: 193 EKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGK--IIPKDDSLDYGGNFSHML 250
+H+ + L+++ P +AA Y+ Y G+ I P++D L Y NF H
Sbjct: 156 NNDLHREI-------TAYRLLSKXPTLAAXCYK--YSTGQPFIYPRND-LSYAENFLHXX 205
Query: 251 GFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLA 303
+P + T+H+DHE N S T L S+ ++P+ AA + L
Sbjct: 206 FATPCEEYEVNPVVARAXDKIFTLHADHEQ-NASTSTVRLAGSSGANPFACIAAGIASLW 264
Query: 304 GPLHGLANQEVLLWIKSV--VDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDP 361
GP HG AN+ L ++ + VD E V + KD ++ + GFGH V + DP
Sbjct: 265 GPAHGGANEACLKXLEEIGSVDNIPEYVDRAKDKDDPFR-------LXGFGHRVYKNYDP 317
Query: 362 RYTCQREFALKHLPD----DPLFQLVSKL 386
R T RE + L + DPL + +L
Sbjct: 318 RATVXRETCHEVLKELNIQDPLLDVAXEL 346
>pdb|1OWB|A Chain A, Three Dimensional Structure Analysis Of The Variant R109l
Nadh Complex Of Type Ii Citrate Synthase From E. Coli
pdb|1OWB|B Chain B, Three Dimensional Structure Analysis Of The Variant R109l
Nadh Complex Of Type Ii Citrate Synthase From E. Coli
pdb|1OWC|A Chain A, Three Dimensional Structure Analysis Of The R109l Variant
Of The Type Ii Citrate Synthase From E. Coli
pdb|1OWC|B Chain B, Three Dimensional Structure Analysis Of The R109l Variant
Of The Type Ii Citrate Synthase From E. Coli
Length = 427
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 110/246 (44%), Gaps = 25/246 (10%)
Query: 132 TGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEA 191
G+ P++EQ D + + + + + A +HPM AL + + ++
Sbjct: 92 NGEKPTQEQYDEFKTTVTLHTMIHEQITRLFHAFRRDSHPMAVMCGITGALA--AFYHDS 149
Query: 192 YEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLG 251
+ ++ ++ E + L++++P +AA Y+ + P++D L Y GNF +M+
Sbjct: 150 LD--VNNPRHREIA---AFRLLSKMPTMAAMCYKYSIGQPFVYPRND-LSYAGNFLNMMF 203
Query: 252 FD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAG 304
+P + M + +H+DHE N S T S+ ++P+ AA + L G
Sbjct: 204 STPCEPYEVNPILERAMDRILILHADHEQ-NASTSTVRTAGSSGANPFACIAAGIASLWG 262
Query: 305 PLHGLANQEVLLWIKSVVDECGENVTTEQLKDYV--WKTLNSGKVVPGFGHGVLRKTDPR 362
P HG AN+ L ++ + + + + ++ K N + GFGH V + DPR
Sbjct: 263 PAHGGANEAALKMLEEI-------SSVKHIPEFFRRAKDKNDSFRLMGFGHRVYKNYDPR 315
Query: 363 YTCQRE 368
T RE
Sbjct: 316 ATVMRE 321
>pdb|1VGM|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From
Sulfolbus Tokodaii Strain7
pdb|1VGM|B Chain B, Crystal Structure Of An Isozyme Of Citrate Synthase From
Sulfolbus Tokodaii Strain7
Length = 378
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 128/278 (46%), Gaps = 44/278 (15%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALP--VTAHPMTQFASGVMALQVQSEFQE 190
G++P+++Q++ + + + VP+ V I ++P A M + A G++A ++
Sbjct: 55 GELPNRQQLNQIKGIINESFEVPEQVISTIFSMPRNCDAIGMMETAFGILASIYDPKWNR 114
Query: 191 AYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPK--DDSLDYGGNFSH 248
A K E ++ +IA+ + A +Y+ K+G + PK + S Y +F
Sbjct: 115 ATNK------------ELAVQIIAKTATITANIYRA--KEG-LKPKIPEPSESYAESFLA 159
Query: 249 MLGFDDPKMLEL--MRLYVTIHSDHEGGNVSAHTGHLVASA-LSDPYLSFAAALNGLAGP 305
P E+ M + +++DHE ++ T LVAS+ LSD Y AAL L GP
Sbjct: 160 ATFGKKPTQEEIKAMDASLILYTDHEVP--ASTTAALVASSTLSDMYSCIVAALAALKGP 217
Query: 306 LHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKV-VPGFGHGVLRKTDPRY- 363
LHG A +E K V E G + E + + + GK + GFGH V + DPR
Sbjct: 218 LHGGAAEEAF---KQFV-EIG---SVENADKWFEEKIIKGKSRLMGFGHRVYKTYDPRAK 270
Query: 364 ---TCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLG 398
T + FA K+ + V K +E+ I KLG
Sbjct: 271 IFKTLAKSFAEKN-------ENVKKYYEIAERI-EKLG 300
>pdb|2R26|A Chain A, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|B Chain B, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|C Chain C, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|D Chain D, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
Length = 384
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 111/260 (42%), Gaps = 23/260 (8%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 192
G +P+++++ + ++ +PD+V AI LP + + +A SE + +
Sbjct: 57 GNLPTEQELRKYKETVQKGYKIPDFVINAIRQLPRESDAVAM-QMAAVAAMAASETKFKW 115
Query: 193 EKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNF-SHMLG 251
K + + + +I R+ + VY+ I +PK S Y +F + G
Sbjct: 116 NKDTDR--------DVAAEMIGRMSAITVNVYRHIMNMPAELPKP-SDSYAESFLNAAFG 166
Query: 252 FDDPKM-LELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLA 310
K ++ M + +++DHE S G + S LSD Y AAL L GPLHG A
Sbjct: 167 RKATKEEIDAMNTALILYTDHEV-PASTTAGLVAVSTLSDMYSGITAALAALKGPLHGGA 225
Query: 311 NQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFA 370
+ + + D + + D + +N K + GFGH V + DPR + A
Sbjct: 226 AEAAIAQFDEIKDPA---MVEKWFNDNI---INGKKRLMGFGHRVYKTYDPRAKIFKGIA 279
Query: 371 LKHLPDDP----LFQLVSKL 386
K P ++++ +KL
Sbjct: 280 EKLSSKKPEVHKVYEIATKL 299
>pdb|2IFC|A Chain A, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|B Chain B, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|C Chain C, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|D Chain D, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2R9E|A Chain A, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|B Chain B, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|C Chain C, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|D Chain D, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
Length = 385
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 111/260 (42%), Gaps = 23/260 (8%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 192
G +P+++++ + ++ +PD+V AI LP + + +A SE + +
Sbjct: 58 GNLPTEQELRKYKETVQKGYKIPDFVINAIRQLPRESDAVAM-QMAAVAAMAASETKFKW 116
Query: 193 EKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNF-SHMLG 251
K + + + +I R+ + VY+ I +PK S Y +F + G
Sbjct: 117 NKDTDR--------DVAAEMIGRMSAITVNVYRHIMNMPAELPKP-SDSYAESFLNAAFG 167
Query: 252 FDDPKM-LELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLA 310
K ++ M + +++DHE S G + S LSD Y AAL L GPLHG A
Sbjct: 168 RKATKEEIDAMNTALILYTDHEV-PASTTAGLVAVSTLSDMYSGITAALAALKGPLHGGA 226
Query: 311 NQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFA 370
+ + + D + + D + +N K + GFGH V + DPR + A
Sbjct: 227 AEAAIAQFDEIKDPA---MVEKWFNDNI---INGKKRLMGFGHRVYKTYDPRAKIFKGIA 280
Query: 371 LKHLPDDP----LFQLVSKL 386
K P ++++ +KL
Sbjct: 281 EKLSSKKPEVHKVYEIATKL 300
>pdb|3HWK|A Chain A, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|B Chain B, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|C Chain C, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|D Chain D, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|E Chain E, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|F Chain F, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|G Chain G, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|H Chain H, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
Length = 414
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 99/232 (42%), Gaps = 21/232 (9%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 192
G++P+ ++ S+ R V + + LP HPM + + L + ++
Sbjct: 99 GELPTDAELALFSQRERASRRVDRSMLSLLAKLPDNCHPMDVVRTAISYLGAEDPDED-- 156
Query: 193 EKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF 252
+ +++K ++ ++A +P + A +R I P L Y NF HM
Sbjct: 157 DAAANRAK--------AMRMMAVLPTIVAIDMRRRRGLPPIAPHS-GLGYAQNFLHMCFG 207
Query: 253 DDPK--MLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLA 310
+ P+ ++ + ++++H G N S +V S SD Y + A+ L G LHG A
Sbjct: 208 EVPETAVVSAFEQSMILYAEH-GFNASTFAARVVTSTQSDIYSAVTGAIGALKGRLHGGA 266
Query: 311 NQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPR 362
N+ V+ + + D ++++ L + + GFGH V R D R
Sbjct: 267 NEAVMHDMIEIGDPA-------NAREWLRAKLARKEKIMGFGHRVYRHGDSR 311
>pdb|3D37|A Chain A, The Crystal Structure Of The Tail Protein From Neisseria
Meningitidis Mc58
pdb|3D37|B Chain B, The Crystal Structure Of The Tail Protein From Neisseria
Meningitidis Mc58
Length = 381
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 4 FRSVTALSRLRSRVGQQSNLSNSVRWLQMQSSADLDLHSQLKEMIPEQQERL----KKVK 59
F VT L++ R G + + ++W+ + + LH + K ++ + L K+ K
Sbjct: 213 FSEVTFLAQSHGRSGDSAK--HDLKWVYKDPT--MTLH-RPKTVVVSDADNLAALQKQAK 267
Query: 60 SELGKAQLGNITVDMVIGGMRGMTGLLWETSL----LDPDEGI 98
+L +L T+ + +GG + G+LW+ L +D + GI
Sbjct: 268 KQLADWRLEGFTLTITVGGHKTRDGVLWQPGLRVHVIDDEHGI 310
>pdb|2OC6|A Chain A, Crystal Structure Of A Protein From The Duf1801 Family
(Ydhg, Bsu05750) From Bacillus Subtilis At 1.75 A
Resolution
pdb|2OC6|B Chain B, Crystal Structure Of A Protein From The Duf1801 Family
(Ydhg, Bsu05750) From Bacillus Subtilis At 1.75 A
Resolution
Length = 124
Score = 28.9 bits (63), Expect = 5.7, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 295 FAAALNGLAGPLHGLANQEVLLWIKS 320
F+ L G+A P H +EVL WIK+
Sbjct: 5 FSEYLAGIADPFHRERTEEVLTWIKN 30
>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|D Chain D, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1LTX|B Chain B, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
pdb|3C72|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor
pdb|3DSS|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)
pdb|3DST|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Geranylgeranyl Pyrophosphate
pdb|3DSU|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Farnesyl Pyrophosphate
pdb|3DSV|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg)
Derivated From Rab7
pdb|3DSW|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys
Derivated From Rab7
pdb|3DSX|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Di-Prenylated Peptide
Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From Rab7
pdb|3HXB|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 6)
pdb|3HXC|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 8)
pdb|3HXD|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 9)
pdb|3HXE|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 37)
pdb|3HXF|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 32)
Length = 331
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 302 LAGPLHGLANQEVLLWIKSVVDECG 326
L G LH + +E+L++IKS ECG
Sbjct: 59 LMGQLHRMNKEEILVFIKSCQHECG 83
>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3
pdb|3PZ2|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3 And Lipid Substrate Ggpp
pdb|3PZ3|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms-Analogue 14
pdb|4EHM|B Chain B, Rabggtase In Complex With Covalently Bound Psoromic Acid
pdb|4GTS|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 16
pdb|4GTT|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 12
pdb|4GTV|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 13
Length = 330
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 302 LAGPLHGLANQEVLLWIKSVVDECG 326
L G LH + +E+L++IKS ECG
Sbjct: 58 LMGQLHRMNKEEILVFIKSCQHECG 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,898,471
Number of Sequences: 62578
Number of extensions: 497500
Number of successful extensions: 1219
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1133
Number of HSP's gapped (non-prelim): 31
length of query: 402
length of database: 14,973,337
effective HSP length: 101
effective length of query: 301
effective length of database: 8,652,959
effective search space: 2604540659
effective search space used: 2604540659
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)