Query 015697
Match_columns 402
No_of_seqs 266 out of 1413
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 08:43:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015697.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015697hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01793 cit_synth_euk citrat 100.0 4E-106 9E-111 822.6 38.9 365 38-402 2-366 (427)
2 KOG2617 Citrate synthase [Ener 100.0 2E-103 4E-108 777.4 31.1 363 36-402 23-385 (458)
3 cd06105 ScCit1-2_like Saccharo 100.0 9E-101 2E-105 783.8 39.4 363 40-402 1-363 (427)
4 PRK09569 type I citrate syntha 100.0 1.2E-98 3E-103 770.2 39.0 363 39-402 2-366 (437)
5 cd06106 ScCit3_like Saccharomy 100.0 5.2E-98 1E-102 763.8 38.9 363 40-402 1-367 (428)
6 cd06103 ScCS-like Saccharomyce 100.0 1.4E-95 3E-100 746.1 39.1 363 40-402 1-365 (426)
7 PLN02456 citrate synthase 100.0 5.9E-88 1.3E-92 694.8 31.9 342 36-402 30-383 (455)
8 cd06115 AthCS_per_like Arabido 100.0 2.1E-80 4.7E-85 632.1 33.8 314 54-392 9-335 (410)
9 cd06107 EcCS_AthCS-per_like Es 100.0 2.9E-79 6.2E-84 619.6 33.1 296 76-392 6-315 (382)
10 cd06116 CaCS_like Chloroflexus 100.0 5.5E-79 1.2E-83 617.9 31.8 291 77-392 7-308 (384)
11 cd06109 BsCS-I_like Bacillus s 100.0 4.4E-78 9.5E-83 605.2 34.1 289 77-402 1-292 (349)
12 PRK12351 methylcitrate synthas 100.0 4.6E-78 1E-82 609.7 33.3 291 77-393 10-307 (378)
13 COG0372 GltA Citrate synthase 100.0 5.1E-78 1.1E-82 608.8 33.0 302 68-396 9-317 (390)
14 PRK14036 citrate synthase; Pro 100.0 1.9E-77 4.1E-82 605.8 33.3 296 75-396 4-305 (377)
15 TIGR01798 cit_synth_I citrate 100.0 1.4E-77 2.9E-82 611.8 32.1 306 55-393 20-340 (412)
16 cd06117 Ec2MCS_like_1 Subgroup 100.0 2.3E-77 5E-82 603.1 32.8 290 78-393 2-298 (366)
17 cd06108 Ec2MCS_like Escherichi 100.0 2.2E-77 4.8E-82 602.3 32.4 288 77-393 1-295 (363)
18 PRK14032 citrate synthase; Pro 100.0 6.7E-77 1.5E-81 612.1 35.2 330 45-397 9-372 (447)
19 cd06112 citrate_synt_like_1_1 100.0 5.9E-77 1.3E-81 602.0 32.3 298 77-398 3-307 (373)
20 PRK05614 gltA type II citrate 100.0 1.3E-76 2.9E-81 606.1 32.2 305 55-392 33-351 (419)
21 PRK14035 citrate synthase; Pro 100.0 2.6E-76 5.6E-81 596.1 32.8 292 75-393 3-300 (371)
22 cd06113 citrate_synt_like_1_2 100.0 4.5E-76 9.7E-81 600.8 34.8 310 81-402 10-348 (406)
23 PRK14034 citrate synthase; Pro 100.0 1.2E-75 2.6E-80 591.4 32.0 291 76-393 4-300 (372)
24 PRK14037 citrate synthase; Pro 100.0 6.5E-75 1.4E-79 587.3 33.6 293 75-396 4-305 (377)
25 cd06114 EcCS_like Escherichia 100.0 9.5E-75 2.1E-79 590.0 32.3 293 75-392 27-333 (400)
26 PF00285 Citrate_synt: Citrate 100.0 5.6E-75 1.2E-79 585.3 27.9 296 78-398 1-304 (356)
27 cd06111 DsCS_like Cold-active 100.0 9.4E-73 2E-77 569.4 31.6 292 77-394 1-298 (362)
28 PRK12349 citrate synthase 3; P 100.0 1.8E-72 3.9E-77 568.6 32.7 293 76-394 6-305 (369)
29 cd06118 citrate_synt_like_1 Ci 100.0 4.8E-72 1E-76 564.3 32.8 293 77-395 1-299 (358)
30 TIGR01800 cit_synth_II 2-methy 100.0 1.2E-71 2.7E-76 562.7 32.2 293 77-395 1-299 (368)
31 cd06110 BSuCS-II_like Bacillus 100.0 3.3E-71 7.2E-76 557.7 32.2 291 77-393 1-297 (356)
32 PRK14033 citrate synthase; Pro 100.0 4.2E-71 9.1E-76 559.4 32.4 298 75-398 9-312 (375)
33 PRK12350 citrate synthase 2; P 100.0 2.1E-69 4.5E-74 541.8 29.5 273 77-397 3-284 (353)
34 cd06101 citrate_synt Citrate s 100.0 3.8E-54 8.2E-59 418.1 22.3 199 77-394 1-205 (265)
35 cd06102 citrate_synt_like_2 Ci 100.0 2.6E-47 5.7E-52 372.3 23.5 213 81-399 17-229 (282)
36 PRK06224 citrate synthase; Pro 100.0 7.5E-41 1.6E-45 324.8 19.9 181 84-393 8-189 (263)
37 cd06099 CS_ACL-C_CCL Citrate s 100.0 1E-39 2.3E-44 307.9 17.3 150 241-396 1-155 (213)
38 cd06100 CCL_ACL-C Citryl-CoA l 100.0 8.7E-35 1.9E-39 276.8 17.8 152 239-393 10-164 (227)
39 PLN02522 ATP citrate (pro-S)-l 100.0 1.6E-34 3.5E-39 306.0 21.4 126 259-392 401-529 (608)
40 KOG1254 ATP-citrate lyase [Ene 98.7 8.6E-09 1.9E-13 106.2 5.3 128 256-391 390-520 (600)
41 cd06100 CCL_ACL-C Citryl-CoA l 97.9 3.2E-05 6.9E-10 74.0 7.6 74 102-184 1-78 (227)
42 KOG2617 Citrate synthase [Ener 95.1 0.0078 1.7E-07 61.8 0.8 179 69-251 257-454 (458)
43 cd06099 CS_ACL-C_CCL Citrate s 87.8 2 4.4E-05 40.8 7.5 61 123-183 2-64 (213)
44 PRK14037 citrate synthase; Pro 83.2 3.2 6.9E-05 42.9 6.9 63 121-183 150-214 (377)
45 PRK14035 citrate synthase; Pro 76.6 6.6 0.00014 40.6 6.6 63 121-183 150-214 (371)
46 PRK12349 citrate synthase 3; P 76.4 8.5 0.00018 39.7 7.4 62 122-183 154-217 (369)
47 cd06112 citrate_synt_like_1_1 76.3 4.8 0.0001 41.6 5.6 60 122-183 152-215 (373)
48 PRK14034 citrate synthase; Pro 75.5 7.3 0.00016 40.3 6.6 64 121-184 150-215 (372)
49 PRK14036 citrate synthase; Pro 74.1 8.8 0.00019 39.8 6.8 63 122-184 153-217 (377)
50 PRK14033 citrate synthase; Pro 67.8 17 0.00037 37.6 7.3 60 122-183 158-221 (375)
51 PRK12351 methylcitrate synthas 67.1 19 0.00041 37.4 7.4 60 122-183 158-221 (378)
52 cd06111 DsCS_like Cold-active 66.5 18 0.0004 37.2 7.2 61 121-183 147-211 (362)
53 cd06108 Ec2MCS_like Escherichi 64.5 20 0.00043 37.0 7.0 61 121-183 145-209 (363)
54 cd06113 citrate_synt_like_1_2 62.6 23 0.00049 37.1 7.1 60 122-183 175-240 (406)
55 cd06117 Ec2MCS_like_1 Subgroup 61.5 27 0.00059 36.0 7.4 60 122-183 149-212 (366)
56 TIGR01800 cit_synth_II 2-methy 60.3 31 0.00066 35.6 7.5 61 121-183 147-211 (368)
57 PRK14032 citrate synthase; Pro 58.4 31 0.00068 36.6 7.3 60 122-183 205-270 (447)
58 cd06110 BSuCS-II_like Bacillus 58.2 31 0.00067 35.4 7.1 60 122-183 148-211 (356)
59 cd06109 BsCS-I_like Bacillus s 57.9 31 0.00067 35.4 7.0 60 122-183 137-200 (349)
60 cd06118 citrate_synt_like_1 Ci 57.7 33 0.00071 35.2 7.1 60 122-183 148-211 (358)
61 cd06101 citrate_synt Citrate s 55.3 49 0.0011 32.5 7.7 78 103-183 37-116 (265)
62 PF00285 Citrate_synt: Citrate 53.5 49 0.0011 33.9 7.6 62 122-183 148-213 (356)
63 PTZ00096 40S ribosomal protein 41.7 19 0.00042 32.4 2.2 22 98-129 15-36 (143)
64 PF07583 PSCyt2: Protein of un 41.6 31 0.00067 32.8 3.7 22 126-147 30-51 (208)
65 PRK13890 conjugal transfer pro 40.4 1.3E+02 0.0028 25.9 7.1 41 100-148 16-57 (120)
66 PRK04038 rps19p 30S ribosomal 37.4 26 0.00055 31.3 2.3 22 98-129 7-28 (134)
67 PRK08558 adenine phosphoribosy 35.9 74 0.0016 30.8 5.4 56 103-166 24-80 (238)
68 cd04448 DEP_PIKfyve DEP (Dishe 34.6 62 0.0013 26.1 3.9 32 123-154 32-63 (81)
69 TIGR01025 rpsS_arch ribosomal 33.4 31 0.00068 30.8 2.2 14 98-111 5-18 (135)
70 PF03461 TRCF: TRCF domain; I 33.3 57 0.0012 27.2 3.7 43 134-184 28-71 (101)
71 PLN00179 acyl- [acyl-carrier p 33.1 6E+02 0.013 26.7 12.9 72 280-362 231-302 (390)
72 COG0372 GltA Citrate synthase 32.8 1.3E+02 0.0028 31.5 6.9 62 122-183 163-227 (390)
73 PRK12350 citrate synthase 2; P 31.0 1.4E+02 0.0031 30.7 6.8 60 122-183 133-199 (353)
74 PF09350 DUF1992: Domain of un 28.9 2.9E+02 0.0062 21.7 6.9 57 334-390 2-65 (71)
75 cd03411 Ferrochelatase_N Ferro 23.5 1.3E+02 0.0027 27.0 4.4 72 326-397 9-84 (159)
76 cd06116 CaCS_like Chloroflexus 22.8 2.4E+02 0.0053 29.3 6.8 63 122-184 155-224 (384)
77 PRK02955 small acid-soluble sp 22.5 76 0.0016 25.1 2.3 23 330-352 17-41 (68)
78 PF14098 SSPI: Small, acid-sol 22.3 72 0.0016 25.0 2.2 23 330-352 15-39 (65)
79 PF14908 DUF4496: Domain of un 21.8 63 0.0014 28.2 2.0 41 333-373 7-61 (140)
80 cd04449 DEP_DEPDC5-like DEP (D 21.2 1.4E+02 0.003 24.0 3.7 32 122-153 32-64 (83)
81 PF09702 Cas_Csa5: CRISPR-asso 20.3 90 0.002 26.7 2.5 19 132-150 69-87 (105)
No 1
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic. This model includes both mitochondrial and peroxisomal forms of citrate synthase. Citrate synthase is the entry point to the TCA cycle from acetyl-CoA. Peroxisomal forms, such as SP:P08679 from yeast (recognized by the C-terminal targeting motif SKL) act in the glyoxylate cycle. Eukaryotic homologs excluded by the high trusted cutoff of this model include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans.
Probab=100.00 E-value=4.1e-106 Score=822.63 Aligned_cols=365 Identities=78% Similarity=1.272 Sum_probs=353.1
Q ss_pred hhHHHHHHhHCHHHHHHHHHHHHhhCCccccceehhcccccccccccceeecceecCCCCceecCCCHHHHhhhCCCCCC
Q 015697 38 LDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKP 117 (402)
Q Consensus 38 ~~lk~~~~~~ip~~~~~~k~l~~~~g~~~ig~~tv~~~~~Glrgv~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~ 117 (402)
++||++++++||.+++++|+||++||+++||++||+|+++||||+++++|+||+|||++||+||||+|+||++.+|++.+
T Consensus 2 ~~lk~~~~~~i~~~~~~~~~l~~~~g~~~~~~~t~~~~~~Glrgv~~~~t~iS~iD~~~Gl~yRGy~I~dl~~~~~~~~~ 81 (427)
T TIGR01793 2 LDLKEQLKEKIPEQQEKVKKLRAEHGKVVLGNITVDMVYGGMRGMKGLVWETSVLDPEEGIRFRGLSIPECQKLLPKAKG 81 (427)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeeHhhccCccCCCcccceeceEEcCCCCeEECCeeHHHHHHHhccCCc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999987777778
Q ss_pred CCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccC
Q 015697 118 DGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIH 197 (402)
Q Consensus 118 ~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~ 197 (402)
++++.||||+||||||+|||++|+++|+++|.+++.+|++|.++|++||+++|||++|+++|++|++++.|+++|+.+.+
T Consensus 82 ~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsaL~~~~~f~~~y~~~~~ 161 (427)
T TIGR01793 82 GEEPLPEGLLWLLLTGKVPSEEQVDALSAEWRARADLPEHVYKTIDALPVTLHPMAQFATAVMALQVESEFAKAYAKGIH 161 (427)
T ss_pred cccCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhcccccchhhhcccCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred CCCCCCchHHHHHHHHHhhhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHHhhCCCChHHHHHHHHHHHHhccCCCCCCh
Q 015697 198 KSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVS 277 (402)
Q Consensus 198 k~~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~~~~~p~~~l~~~~nf~~ml~~~~~~~~~~l~~~Lil~aDHeg~n~S 277 (402)
+.++|++.++++++|||++|+|+|++||+.+++|+.++|++++||++||++||+++++.++++||++|||||||||+|+|
T Consensus 162 ~~~~~~~~~e~~~~LiAk~P~i~A~~yr~~~~~g~~i~p~~~l~~a~Nfl~Ml~~~~~~~~~~l~~~LiLhADHeg~NaS 241 (427)
T TIGR01793 162 KTKYWEYTYEDSMDLIAKLPTVAAYIYRNMYKDGQSISIDDSKDYSANFAHMLGYDSPSFQELMRLYLTIHSDHEGGNVS 241 (427)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCccHHHHHHHHhcCCCHHHHHHHHHHHhhhcccccccch
Confidence 88999999999999999999999999998776776789999999999999999999999999999999999999989999
Q ss_pred hHHHHHHhccCCChHHHHHHHhhcccCCccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCC
Q 015697 278 AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLR 357 (402)
Q Consensus 278 t~aarvvaSt~sd~y~avaAgi~aL~GplHGgAne~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vyr 357 (402)
|||+||||||++|||+|++|||++|+||+||||||+|++||.++.+++|.+++++++++||++.+++|++||||||||||
T Consensus 242 TfaarvvaSt~ad~y~~v~Agi~aL~GPlHGgAn~~vl~~l~ei~~~ig~~~s~~~v~~~i~~~l~~g~~i~GfGH~vyr 321 (427)
T TIGR01793 242 AHTGHLVGSALSDPYLSFAAALNGLAGPLHGLANQEVLLWLKSVVSECGENVTKEQLKDYIWKTLNSGKVVPGYGHAVLR 321 (427)
T ss_pred hHHHHHhhccCCCHHHHHHHHHhhccCCccCCcHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCcccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999888887778999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHhcCCCCC
Q 015697 358 KTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVSN 402 (402)
Q Consensus 358 ~~DPRa~~l~~~a~~~~~~d~~~~la~~le~~~~~~l~~~~k~~n 402 (402)
.+|||+++|+++++++.+++++++++.++++++++++.+++|.||
T Consensus 322 ~~DPRa~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 366 (427)
T TIGR01793 322 KTDPRYICQREFALKHLPDDPLFKLVSNLYKIVPGILTELGKVKN 366 (427)
T ss_pred CCCCCcHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccC
Confidence 999999999999999989999999999999999999999999886
No 2
>KOG2617 consensus Citrate synthase [Energy production and conversion]
Probab=100.00 E-value=1.7e-103 Score=777.40 Aligned_cols=363 Identities=60% Similarity=1.010 Sum_probs=355.4
Q ss_pred cchhHHHHHHhHCHHHHHHHHHHHHhhCCccccceehhcccccccccccceeecceecCCCCceecCCCHHHHhhhCCCC
Q 015697 36 ADLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAA 115 (402)
Q Consensus 36 ~~~~lk~~~~~~ip~~~~~~k~l~~~~g~~~ig~~tv~~~~~Glrgv~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~ 115 (402)
+..+||++|++.||++++++|+++++|| +||+||++++++||||++.+.|+.|++|+++||+|||++|+||+..+|++
T Consensus 23 ~~~~LK~~l~~~ip~~~~~~k~~~~ehG--~vg~v~i~~i~gGmrg~~~~~~e~s~Ld~~~gI~frg~~i~e~q~~lp~~ 100 (458)
T KOG2617|consen 23 SAATLKGNLAIVIPRTGDEYKKFVSEHG--TVGNVTLKKIYGGMRGKGLLLWETSVLDPEEGIRFRGGDIPECQKRLPPA 100 (458)
T ss_pred ccccHHHHHHhhChhhHHHhhhhHhhcC--cccceeHHHhhcccCCCCceeecCcccchhhCeeecCCCHHHHHhhCCCC
Confidence 3445999999999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhc
Q 015697 116 KPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKG 195 (402)
Q Consensus 116 ~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~ 195 (402)
+++.|++||+++|||+||++||++|+++++.+|++|+.+|++|.++|+++|+|+|||.||++++++|+..|+|+++|..|
T Consensus 101 ~~~~e~lpe~~~wLL~tG~vPt~~Q~~~~~~~~a~rs~vP~~v~~~idsmP~d~HPM~q~~~a~~al~~~s~fa~ay~~G 180 (458)
T KOG2617|consen 101 EEGAEPLPEELFWLLLTGNVPTQSQVAALSFELAQRSAVPQGVLDMIDSMPKDLHPMAQLAAAVLALKIFSPFAKAYLRG 180 (458)
T ss_pred ccCCcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccHHHHHHHHhCCcccchHHHHHHHHHhccccccchhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCchHHHHHHHHHhhhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHHhhCCCChHHHHHHHHHHHHhccCCCCC
Q 015697 196 IHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGN 275 (402)
Q Consensus 196 ~~k~~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~~~~~p~~~l~~~~nf~~ml~~~~~~~~~~l~~~Lil~aDHeg~n 275 (402)
++|.+||++++||+++|||++|+|+|++|++.+++|.+. |++++||++||++|+++.++.++++||+|++||+||||+|
T Consensus 181 ~~k~~yw~~~~ed~l~Liak~p~iAa~iY~~~~~dg~~~-~~~~~dys~Nf~~mlg~~~~~f~~lmrly~~iHadHE~gn 259 (458)
T KOG2617|consen 181 IGKYKYWQYTYEDCLVLIAKLPTIAAAIYRNIYADGIPK-PDPNLDYSANFARMLGSRQPDFAQLMRLYVGIHADHEGGN 259 (458)
T ss_pred cchhhcccccHHHHHHHHHhccHHHHHHHHHHhcCCCCC-CCcccchhHhHHHHHccCChHHHHHHHHeeeeecccccCc
Confidence 999999999999999999999999999999999988544 4999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhccCCChHHHHHHHhhcccCCccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCC
Q 015697 276 VSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGV 355 (402)
Q Consensus 276 ~St~aarvvaSt~sd~y~avaAgi~aL~GplHGgAne~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~V 355 (402)
+|+||.|+++|++ |||.++|||+++|+||+||+|||+|++||..+.++||++.++|++++|||.++++|++||||||+|
T Consensus 260 VsAh~~HLvGSal-dpyls~aa~~~GLaGPLHGlAnqEvl~~L~~~~~Eig~~~s~e~ikeyiw~~ln~~rvvpGyGHav 338 (458)
T KOG2617|consen 260 VSAHTGHLVGSAL-DPYLSFAAGMNGLAGPLHGLANQEVLRFLGKLIEEIGKDLSKENIKEYIWKTLNSGRVVPGYGHAV 338 (458)
T ss_pred HHHHhcccccccc-chhHHHHHhhcccccccccCchHHHHHHHHHhHHHhccccchhhhhHhhHHhhccccccccccccc
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHhcCCCCC
Q 015697 356 LRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVSN 402 (402)
Q Consensus 356 yr~~DPRa~~l~~~a~~~~~~d~~~~la~~le~~~~~~l~~~~k~~n 402 (402)
||++|||++++++||.+++++||+|+++..+++++|.+|.||||+||
T Consensus 339 lr~tDPR~~~~~efA~k~~~~d~l~~l~~~l~~~~p~vl~e~gk~kn 385 (458)
T KOG2617|consen 339 LRKTDPRYKVQREFALKHLPDDPLFLLVSALYKIAPGVLTEHGKVKN 385 (458)
T ss_pred ccCCCchhhHHHHHHHhcCCCCcchhhhHHHHHhChHHHHHhcccCC
Confidence 99999999999999999999999999999999999999999999998
No 3
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like. Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-neg
Probab=100.00 E-value=9.5e-101 Score=783.80 Aligned_cols=363 Identities=66% Similarity=1.150 Sum_probs=348.6
Q ss_pred HHHHHHhHCHHHHHHHHHHHHhhCCccccceehhcccccccccccceeecceecCCCCceecCCCHHHHhhhCCCCCCCC
Q 015697 40 LHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDG 119 (402)
Q Consensus 40 lk~~~~~~ip~~~~~~k~l~~~~g~~~ig~~tv~~~~~Glrgv~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~~~ 119 (402)
|||++++.||.+++++++|+++||+++||++|+|++++||||+++++|+||+|||++||+||||+|+||++++|++.+++
T Consensus 1 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~d~~~~Gl~g~~~~~t~iS~iDg~~Gl~YRGy~I~dLa~~~~~~~~~~ 80 (427)
T cd06105 1 LKDRLAELIPKEQARIKKFRKEHGKTVVGEVTVDMVYGGMRGIKGLVWETSVLDPEEGIRFRGLSIPECQKLLPKAPGGE 80 (427)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCcceeeeecCcccCCCCCceecceeceeEcCCCCeEECCccHHHHHhhCccccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999998766788
Q ss_pred CCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccCCC
Q 015697 120 EPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKS 199 (402)
Q Consensus 120 ~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~ 199 (402)
+++||||+||||+|+|||++|+++|+++|.+++.+|+.|.++|++||+++|||++|+++|++|+++|+|++.|+++.++.
T Consensus 81 ~~~fEev~yLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsaL~~~d~f~~~~~~~~~~~ 160 (427)
T cd06105 81 EPLPEGLFWLLLTGEVPTKEQVSALSKEWAARAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESKFAKAYAEGIHKS 160 (427)
T ss_pred ccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhcccchhhhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998988898888888
Q ss_pred CCCCchHHHHHHHHHhhhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHHhhCCCChHHHHHHHHHHHHhccCCCCCChhH
Q 015697 200 KYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAH 279 (402)
Q Consensus 200 ~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~~~~~p~~~l~~~~nf~~ml~~~~~~~~~~l~~~Lil~aDHeg~n~St~ 279 (402)
++|++.++++++|||++|+|+|++||+++.+.++++||+++||++||++||++.++.++++||++|||||||||+|+|||
T Consensus 161 ~~~~~~~~~~~~LiAk~p~i~A~~yr~~~~g~~~~~pd~~ls~a~Nfl~Ml~~~~~~~~~~l~~~lvLhADHeg~NaSTf 240 (427)
T cd06105 161 KYWEYVYEDSMDLIAKLPCVAAKIYRNLYRGGKIIAIDSNLDWSANFANMLGYTDPQFTELMRLYLTIHSDHEGGNVSAH 240 (427)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCcCHHHHHHHHhcCCCHHHHHHHHHHHhhhccccCccchHH
Confidence 89999999999999999999999999866455689999999999999999998778899999999999999998899999
Q ss_pred HHHHHhccCCChHHHHHHHhhcccCCccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCC
Q 015697 280 TGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKT 359 (402)
Q Consensus 280 aarvvaSt~sd~y~avaAgi~aL~GplHGgAne~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vyr~~ 359 (402)
|+|+||||++|||+|++|||++|+||+||||||+|++||.++.+++|.+++++++++||++.+++|++||||||||||..
T Consensus 241 aarvvaSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei~~~~g~~~~~~~v~~~i~~~l~~g~~i~GFGHrvyk~~ 320 (427)
T cd06105 241 TTHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTKLQKEVGKDVSDEQLREYVWKTLNSGRVVPGYGHAVLRKT 320 (427)
T ss_pred HHHHHhccCCCHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCcccCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999988888777889999999999999999999999999999
Q ss_pred CCChHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHhcCCCCC
Q 015697 360 DPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVSN 402 (402)
Q Consensus 360 DPRa~~l~~~a~~~~~~d~~~~la~~le~~~~~~l~~~~k~~n 402 (402)
|||+++|++++.++.++++++++++++++++++++.+.++.||
T Consensus 321 DPRa~~lk~~~~~~~~~~~~~~~~~~ie~~a~~~l~~~~~~~~ 363 (427)
T cd06105 321 DPRYTCQREFALKHLPNDPLFKLVSQLYKIVPPVLTEQGKAKN 363 (427)
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 9999999999999988999999999999999999999988775
No 4
>PRK09569 type I citrate synthase; Reviewed
Probab=100.00 E-value=1.2e-98 Score=770.17 Aligned_cols=363 Identities=52% Similarity=0.895 Sum_probs=345.2
Q ss_pred hHHHHHHhHCHHHHHHHHHHHHhhCCccccceehhcccccccccccceeecceecCCCCceecCCCHHHHhhhCCCCCCC
Q 015697 39 DLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPD 118 (402)
Q Consensus 39 ~lk~~~~~~ip~~~~~~k~l~~~~g~~~ig~~tv~~~~~Glrgv~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~~ 118 (402)
+||++++++||.+|++|++|+++||+++||++|+||+.+|||||++++|+||+|||++||+||||+|+||++++|+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~GL~gv~~~~t~IS~iDg~~Gl~YRGy~I~dL~~~~p~~~~~ 81 (437)
T PRK09569 2 QLKETLKQKIEEHRPRTTRLVKEFGSVVIDEVTIEQCIGGARDIRSLVTDISYLDPQEGIRFRGKTIPETFEALPKAPGS 81 (437)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCeeeeeeeHhhhcccccCCeecceeceeecCCCceeECCccHHHHHhhCcccccc
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred CCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhc-cC
Q 015697 119 GEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKG-IH 197 (402)
Q Consensus 119 ~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~-~~ 197 (402)
++++||||+||||||+|||++|+++|+++|.+++.+|+.|.++|++||+++|||++|+++|++|+++|.|+..|+++ .+
T Consensus 82 ~~~~fEev~~LLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~s~~~~~y~~~~~~ 161 (437)
T PRK09569 82 EYPTVESFWYFLLTGEVPTQEQVQEVVAEWKKRQNVPQYVIDAIRALPRDSHPMVMLSVGILAMQRESKFAKFYNEGKFN 161 (437)
T ss_pred CCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhccccchhhhhccccccc
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999888776 56
Q ss_pred CCCCCCchHHHHHHHHHhhhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHHhhCCCChHHHHHHHHHHHHhccCCCCCCh
Q 015697 198 KSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVS 277 (402)
Q Consensus 198 k~~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~~~~~p~~~l~~~~nf~~ml~~~~~~~~~~l~~~Lil~aDHeg~n~S 277 (402)
+.++|++.++++++|||++|+|+|++||++++++++++|++++||++||++||+++ +.++++||++|||||||||+|+|
T Consensus 162 ~~~~~~~~~~~~~rliA~~p~i~A~~yr~~~~g~~~~~p~~~ls~a~NFl~Ml~~~-~~~~~~l~~~LiL~ADHe~~naS 240 (437)
T PRK09569 162 KMDAWEYMYEDASDLVARIPVIAAYIYNLKYKGDKQIPSDPELDYGANFAHMIGQP-KPYKDVARMYFILHSDHESGNVS 240 (437)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHhcCC-chHHHHHHHHHhhhhccCCCcch
Confidence 66789999999999999999999999999876567899999999999999999986 45679999999999999988999
Q ss_pred hHHHHHHhccCCChHHHHHHHhhcccCCccccchHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhCCCcccccCCCCC
Q 015697 278 AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECG-ENVTTEQLKDYVWKTLNSGKVVPGFGHGVL 356 (402)
Q Consensus 278 t~aarvvaSt~sd~y~avaAgi~aL~GplHGgAne~v~~~l~~i~~~ig-~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vy 356 (402)
|||+|+++||++|||+|++|||++|+||+||||||+|++||.++.+++| ..++++++++||++.+++|++|||||||||
T Consensus 241 TfaaRvvaSt~ad~ysav~Agi~aL~GplHGGA~e~v~~~l~~i~~~~~~~~~~~~~~~~~v~~~l~~~~ri~GFGHrvy 320 (437)
T PRK09569 241 AHTTHLVASALSDAYYSYSAGLNGLAGPLHGLANQEVLGWIQQFQEKLGGEEPTKEQVEQALWDTLNAGQVIPGYGHAVL 320 (437)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCcccCCCCCCC
Confidence 9999999999999999999999999999999999999999999987774 334689999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHhcCCCCC
Q 015697 357 RKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVSN 402 (402)
Q Consensus 357 r~~DPRa~~l~~~a~~~~~~d~~~~la~~le~~~~~~l~~~~k~~n 402 (402)
|..|||+++|+++++++.++++++++++.+++++++++.+++|.||
T Consensus 321 k~~DPRa~~L~~~a~~~~~~~~~~~ia~~~e~v~~~~~~~~~~~~~ 366 (437)
T PRK09569 321 RKTDPRYTAQREFCLKHLPDDPLFKLVAMIFEVAPGVLTEHGKTKN 366 (437)
T ss_pred CCCCCchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 9999999999999999988999999999999999999999988875
No 5
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like. 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxaloacetate (OAA) to form 2-methylcitrate and CoA. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with OAA to form citrate and CoA, the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the a
Probab=100.00 E-value=5.2e-98 Score=763.84 Aligned_cols=363 Identities=57% Similarity=0.989 Sum_probs=339.0
Q ss_pred HHHHHHhHCHHHHHHHHHHHHhhCCccccceehhcccccccccccceeecceecCCCCceecCCCHHHHhhhCCCCCCCC
Q 015697 40 LHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDG 119 (402)
Q Consensus 40 lk~~~~~~ip~~~~~~k~l~~~~g~~~ig~~tv~~~~~Glrgv~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~~~ 119 (402)
||++++++||.+|+++++|+++||+++||++|++++++|||||++++|+||+||+++||+||||+|+||++++|+..++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~~~~~GL~gv~~~~t~is~idg~~Gl~YRGy~I~dLa~~~~~~~~~~ 80 (428)
T cd06106 1 LKEALKEVIPAKREQLKKLKAEYGETVVGDVKVSNVLGGMRGLKSMLWEGSVLDAEEGIRFHGKTIPECQKELPKAPIGG 80 (428)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCCeeeeeeHHHhcccccCCeeeeecCeEECCCCCeeECCCcHHHHHhhCccccccC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999998754444
Q ss_pred CCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccCCC
Q 015697 120 EPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKS 199 (402)
Q Consensus 120 ~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~ 199 (402)
.+.||||+||||+|+|||++|+++|+++|.+++.||+.|.++|++||+++|||++|+++|++|+.++.|..+|+.+..+.
T Consensus 81 ~f~~Eev~yLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~L~~~~~~~~~y~~~~~~~ 160 (428)
T cd06106 81 EMLPESMLWLLLTGKVPTFEQARGLSKELAERGKLPHYIEKLLDSLPKTLHPMTQLSIGVAALNHDSKFAAAYEKGIKKT 160 (428)
T ss_pred CccHHHHHHHHHcCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhccccchhhhhcccCcccc
Confidence 44559999999999999999999999999999999999999999999999999999999999999888877787777666
Q ss_pred CCCCchHHHHHHHHHhhhHHHHHHHHHHhcCCc-ccCCCCCCCHHHHHHHhhCC-CChHHHHHHHHHHHHhccCCCCCCh
Q 015697 200 KYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGK-IIPKDDSLDYGGNFSHMLGF-DDPKMLELMRLYVTIHSDHEGGNVS 277 (402)
Q Consensus 200 ~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~~-~~~p~~~l~~~~nf~~ml~~-~~~~~~~~l~~~Lil~aDHeg~n~S 277 (402)
++|++.++++++|||++|+|+|++||++++++. +++|++++||++||++||+. |++.++++||++|||||||||+|+|
T Consensus 161 ~~~~~~~~~~~rLiAk~ptI~A~~yr~~~g~~~~~~~p~~~ls~a~NFL~Mlg~~p~~~~~~~l~~~LiL~ADHeg~NaS 240 (428)
T cd06106 161 EYWEPTLEDSLNLIARLPALAARIYRNVYGEGHGLGKIDPEVDWSYNFTSMLGYGDNLDFVDLLRLYIALHGDHEGGNVS 240 (428)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHhhhcccCCccch
Confidence 789999999999999999999999999887554 55699999999999999965 7889999999999999999988999
Q ss_pred hHHHHHHhccCCChHHHHHHHhhcccCCccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCC
Q 015697 278 AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLR 357 (402)
Q Consensus 278 t~aarvvaSt~sd~y~avaAgi~aL~GplHGgAne~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vyr 357 (402)
|||+||||||++|+|+|++|||++|+||+|||||++|++||.++.++||++.+++++++||++.+++|++||||||||||
T Consensus 241 TfaarvvaST~ad~ysav~agi~aL~GPlHGGAne~v~~~l~e~~~~ig~~~~~~~~~~~i~~~l~~g~~i~GfGHrvYk 320 (428)
T cd06106 241 AHTTHLVGSALSDPYLSYSAGLMGLAGPLHGLAAQEVLRWILEMQKNIGSKATDQDIRDYLWKTLKSGRVVPGYGHAVLR 320 (428)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHhcCCCcccChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999888886556799999999999999999999999999
Q ss_pred CCCCChHHHHHHHHhhC--CCChHHHHHHHHHHHHHHHHHhcCCCCC
Q 015697 358 KTDPRYTCQREFALKHL--PDDPLFQLVSKLFEVVPPILTKLGKVSN 402 (402)
Q Consensus 358 ~~DPRa~~l~~~a~~~~--~~d~~~~la~~le~~~~~~l~~~~k~~n 402 (402)
..|||+++|+++++++. ..++++++++++++++++++.+.++.||
T Consensus 321 ~~DPRa~~l~~~~~~l~~~~~~~~~~~a~~ie~~~~~~l~~~~~~~~ 367 (428)
T cd06106 321 KPDPRFTALMEFAQTRPELENDPVVQLVQKLSEIAPGVLTEHGKTKN 367 (428)
T ss_pred CCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhccccC
Confidence 99999999999999874 4579999999999999999888877664
No 6
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homo
Probab=100.00 E-value=1.4e-95 Score=746.14 Aligned_cols=363 Identities=63% Similarity=1.112 Sum_probs=342.4
Q ss_pred HHHHHHhHCHHHHHHHHHHHHhhCCccccceehhcccccccccccceeecceecCCCCceecCCCHHHHhhhCCCCCCCC
Q 015697 40 LHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDG 119 (402)
Q Consensus 40 lk~~~~~~ip~~~~~~k~l~~~~g~~~ig~~tv~~~~~Glrgv~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~~~ 119 (402)
|||+++++||.+++.++.|+++||+++++++|++++.+||+|+++++|+||+|||++||+||||+|+||++++|+.+++.
T Consensus 1 l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~gv~~~~t~Is~iDg~~Gl~YRGy~I~dLa~~~~~~~~~~ 80 (426)
T cd06103 1 LKDKLAELIPKKQARIKELRKKYGNTKLGQITVDQVIGGMRGMKGLVYETSVLDPDEGIRFRGKTIPECQELLPKADGGG 80 (426)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCccccccchhhhccCcCCCeeeeeeCeeEcCCCCeEECCccHHHHHhhCccccccC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999998766555
Q ss_pred CCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhc-cCC
Q 015697 120 EPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKG-IHK 198 (402)
Q Consensus 120 ~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~-~~k 198 (402)
+++||||+||||+|+|||++|+++|+++|..++.+|+.|.+++++||+++|||++|+++|++|+++++|++.|+++ .++
T Consensus 81 ~~~fEev~yLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~ 160 (426)
T cd06103 81 EPLPEGLFWLLLTGEVPTEEQVDELSKEWAKRAEVPSHVVKMIDNLPRNLHPMTQLSAAILALQSESKFAKAYAEGKINK 160 (426)
T ss_pred cCcHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCChHHHHHHHHHhccccccchhhcccccccc
Confidence 5679999999999999999999999999999999999999999999999999999999999999998888778766 667
Q ss_pred CCCCCchHHHHHHHHHhhhHHHHHHHHHHh-cCCcccCCCCCCCHHHHHHHhhCCCChHHHHHHHHHHHHhccCCCCCCh
Q 015697 199 SKYWEPTYEDSLNLIARVPVVAAYVYQRIY-KDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVS 277 (402)
Q Consensus 199 ~~~~~~~~e~a~~LiAklp~iaa~iyr~~~-~~~~~~~p~~~l~~~~nf~~ml~~~~~~~~~~l~~~Lil~aDHeg~n~S 277 (402)
+++|+..++++++|||++|+|+|++||+++ .++++++|++++||++||++||++.++..+++||++|||||||||+|+|
T Consensus 161 ~~~~~~~~~~a~~liA~~p~I~A~~yr~~~~~g~~~~~p~~~ls~aeNfl~ml~~~~~~~~~~l~~~LiL~ADHe~~NaS 240 (426)
T cd06103 161 TTYWEYVYEDAMDLIAKLPVVAAKIYRRKYRKGGEIGAIDSKLDWSANFAHMLGYEDEEFTDLMRLYLTLHSDHEGGNVS 240 (426)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCcCHHHHHHHHhCCCCHHHHHHHHHHHhhhhccCCccch
Confidence 778999999999999999999999999885 4456889999999999999999876688899999999999999988999
Q ss_pred hHHHHHHhccCCChHHHHHHHhhcccCCccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCC
Q 015697 278 AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLR 357 (402)
Q Consensus 278 t~aarvvaSt~sd~y~avaAgi~aL~GplHGgAne~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vyr 357 (402)
|||+|+|+||++|+|+|++|||++|+||+|||||+.|++||.++.+++|.+.+++++++||++.+++|++||||||||||
T Consensus 241 TfaaRvvaSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei~~~ig~~~~~~~~~~~v~~~l~~~~~i~GfGHrvYk 320 (426)
T cd06103 241 AHTSHLVGSALSDPYLSFSAALNGLAGPLHGLANQEVLKWLLKMQKELGKDVSDEELEKYIWDTLNSGRVVPGYGHAVLR 320 (426)
T ss_pred HHHHHHHhccCCCHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCcccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999888886667899999999999999999999999999
Q ss_pred CCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHhcCCCCC
Q 015697 358 KTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVSN 402 (402)
Q Consensus 358 ~~DPRa~~l~~~a~~~~~~d~~~~la~~le~~~~~~l~~~~k~~n 402 (402)
..|||+++|+++++++...++++++++++++++.+++.+.++.||
T Consensus 321 ~~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~~~~~~~~~k~ 365 (426)
T cd06103 321 KTDPRFTCQREFALKHLPDDPLFKLVAQCYKIIPGVLKEHGKVKN 365 (426)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 999999999999999988899999999999999998888877664
No 7
>PLN02456 citrate synthase
Probab=100.00 E-value=5.9e-88 Score=694.84 Aligned_cols=342 Identities=49% Similarity=0.730 Sum_probs=319.9
Q ss_pred cchhHHHHHHhHCHHHHHHHHHHHHhhCCccccceehhcccccccccccceeecceecCCCCc-eecCCCHHHHhhhCCC
Q 015697 36 ADLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPA 114 (402)
Q Consensus 36 ~~~~lk~~~~~~ip~~~~~~k~l~~~~g~~~ig~~tv~~~~~Glrgv~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~ 114 (402)
+.++++..+.+.+|+++..|++|++ |++.+|.+|+| +||+|+.+++|+||+||+++|+ +||||+|+||++++
T Consensus 30 ~g~~~~~~i~~~~~~~~~~~~~l~~--~~~~~g~~~~d---~Gl~~~~~~~s~IS~iDg~~G~L~YRGy~I~dLa~~~-- 102 (455)
T PLN02456 30 TGKDYESPLSELGPVQAERLKKIKA--GKDDLGLKTVD---PGYRNTAPVLSEISLIDGDEGILRFRGYPIEELAEKS-- 102 (455)
T ss_pred CCcEEEEehhccCCcccchhhhccc--CcCccCCEecC---cccCCceeeeeeceEEeCCCCEEEECCccHHHHHhcC--
Confidence 4467888888888999999999998 88999999998 6999999999999999999997 99999999999986
Q ss_pred CCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhh
Q 015697 115 AKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEK 194 (402)
Q Consensus 115 ~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~ 194 (402)
.||||+||||+|+|||++|+++|+.+|..++.+|+.|.+++++||+++|||++|+++|++|+++++++..|..
T Consensus 103 -------~feevayLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsal~~~~~~~~~~~~ 175 (455)
T PLN02456 103 -------PFEEVAYLLLYGNLPTKEQLADWEAELRQHSAVPEHVLDVIDALPHDAHPMTQLVSGVMALSTFSPDANAYLR 175 (455)
T ss_pred -------CHHHHHHHHHcCcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHhCCCcCCcHHHHHHHHHhhhhcCcchhhhhc
Confidence 5999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred ccCCCCCCCchHHHHHHHHHhhhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHHhhCC-------CChHHHHHHHHHHHH
Q 015697 195 GIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTI 267 (402)
Q Consensus 195 ~~~k~~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~~~~~p~~~l~~~~nf~~ml~~-------~~~~~~~~l~~~Lil 267 (402)
|.++..+|+..++++++|||++|+|+|++||++++.+ ++.|++++||++||++||++ +++.++++||++|||
T Consensus 176 g~~~~~~~~~~~~~a~rliAk~p~iaA~~yr~~~g~~-~~~P~~~ls~a~Nfl~Ml~~~~~~~~~p~~~~~~~l~~~LiL 254 (455)
T PLN02456 176 GQHKYKSWEVRDEDIVRLIGKLPTLAAAIYRRMYGRG-PVIPDNSLDYAENFLYMLGSLGDRSYKPDPRLARLLDLYFII 254 (455)
T ss_pred ccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCCCCCCHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHee
Confidence 8777778999999999999999999999999998754 67799999999999999986 788999999999999
Q ss_pred hccCCCCCChhHHHHHHh-ccCCChHHHHHHHhhcccCCccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCC
Q 015697 268 HSDHEGGNVSAHTGHLVA-SALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGK 346 (402)
Q Consensus 268 ~aDHeg~n~St~aarvva-St~sd~y~avaAgi~aL~GplHGgAne~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~ 346 (402)
||||| +|+|||++|+++ ||++|||+|++|||++|+||+||||||+|++||.++ | +++++++||++.+++|+
T Consensus 255 hADHe-~n~ST~aar~~a~St~ad~ysavaAgi~aL~GPlHGGA~e~v~~~l~ei----~---~~~~v~~~v~~~l~~~~ 326 (455)
T PLN02456 255 HADHE-GGCSTAAARHLVGSSGVDPYTSVAAGVNALAGPLHGGANEAVLKMLKEI----G---TVENIPEYVEGVKNSKK 326 (455)
T ss_pred eccCC-CCchhHHHHHHHhccCCCHHHHHHHHhhhcCCCcccChHHHHHHHHHHh----C---CHHHHHHHHHHHHhCCC
Confidence 99999 999999999999 999999999999999999999999999999999987 5 57899999999999999
Q ss_pred cccccCCCCCCCCCCChHHHHHHHHhh---CCCChHHHHHHHHHHHHHHHHHhcCCCCC
Q 015697 347 VVPGFGHGVLRKTDPRYTCQREFALKH---LPDDPLFQLVSKLFEVVPPILTKLGKVSN 402 (402)
Q Consensus 347 ~IpGfGH~Vyr~~DPRa~~l~~~a~~~---~~~d~~~~la~~le~~~~~~l~~~~k~~n 402 (402)
+||||||||||+.|||+++|+++++++ .+++|+++++.++|+++ +..+++|.||
T Consensus 327 ~l~GFGHrvyk~~DPRa~~L~~~a~~l~~~~~~~~~~~ia~~le~~~--~~~~~~~~r~ 383 (455)
T PLN02456 327 VLPGFGHRVYKNYDPRAKCIREFALEVFKHVGDDPLFKVASALEEVA--LLDEYFKVRK 383 (455)
T ss_pred cccCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--HHHHhcCCCC
Confidence 999999999999999999999999965 57899999999999987 4556666664
No 8
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains three Arabidopsis peroxisomal CS proteins, CYS1, -2, and -3 which are involved in the glyoxylate cycle. AthCYS1, in addition to a peroxisomal targeting sequence, has a predicted secretory signal peptide; it may be targeted to both the secretory pathway and the peroxisomes and is thought to be located in the extracellular matrix. AthCSY1 is expr
Probab=100.00 E-value=2.1e-80 Score=632.05 Aligned_cols=314 Identities=27% Similarity=0.393 Sum_probs=279.6
Q ss_pred HHHHHHHhhCCccccceehhcccccccccccceeecceecCCCCc-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHh
Q 015697 54 RLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLT 132 (402)
Q Consensus 54 ~~k~l~~~~g~~~ig~~tv~~~~~Glrgv~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~ 132 (402)
.|++|++.-+ ..|..+++ .||+|+.+++|+||+|||++|+ +||||+|+||++++ .||||+||||+
T Consensus 9 d~~~~~~~~~--~~g~~~~~---~Gl~~~~~~~t~Is~iDg~~G~L~YRGy~I~dLa~~~---------~feEv~~LLl~ 74 (410)
T cd06115 9 DFKKIKAGKD--DKGLRLYD---PGYLNTAVVRSKISYIDGDKGILRYRGYPIEELAEKS---------TFLEVAYLLIY 74 (410)
T ss_pred eHHHhcCCcc--cCCCcccC---CccCCceEEEeeCeeEeCCCCeEEECCccHHHHHhcC---------CHHHHHHHHHc
Confidence 4778887322 34567765 5999999999999999999996 99999999999985 59999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccCCC--CCCCchHHHHH
Q 015697 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKS--KYWEPTYEDSL 210 (402)
Q Consensus 133 G~lPt~~ql~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~--~~~~~~~e~a~ 210 (402)
|+|||++|+++|+++|.+++.+|+.+.++|++||+++|||++|+++|++|+.+++.. ++....++ ..++..+++++
T Consensus 75 G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~~~~--~~~~~~~~~~~~~~~~~~~a~ 152 (410)
T cd06115 75 GNLPTKSQLSDWEFAVSQHTAVPTGVLDMIKSFPHDAHPMGMLVSAISALSAFHPEA--NPALAGQDIYKNKQVRDKQIV 152 (410)
T ss_pred CCCcCHHHHHHHHHHHHHccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCccc--cccccccccccCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999765432 11000111 12356788999
Q ss_pred HHHHhhhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHHhhCC-------CChHHHHHHHHHHHHhccCCCCCChhHHHHH
Q 015697 211 NLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHL 283 (402)
Q Consensus 211 ~LiAklp~iaa~iyr~~~~~~~~~~p~~~l~~~~nf~~ml~~-------~~~~~~~~l~~~Lil~aDHeg~n~St~aarv 283 (402)
+|||++|+|+|++||++.+. ++++|++++||++||++||++ |++..+++||.+|||||||| +|+||||+|+
T Consensus 153 rliA~~p~i~A~~~r~~~g~-~~~~p~~~ls~a~NFl~Ml~g~~~~~~~p~~~~~~~l~~~liL~ADH~-~naSTfaarv 230 (410)
T cd06115 153 RILGKAPTIAAAAYRRRAGR-PPNLPSQDLSYTENFLYMLDSLGERKYKPNPRLARALDILFILHAEHE-MNCSTAAVRH 230 (410)
T ss_pred HHHHHHHHHHHHHHHHHcCC-CCcCCCCCCCHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHhhccC-CCchHHHHHH
Confidence 99999999999999998764 488999999999999999975 56789999999999999998 9999999999
Q ss_pred HhccCCChHHHHHHHhhcccCCccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCCh
Q 015697 284 VASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRY 363 (402)
Q Consensus 284 vaSt~sd~y~avaAgi~aL~GplHGgAne~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vyr~~DPRa 363 (402)
++||++|+|+|++|||++|+||+||||||+|++||.++ + +++++++||++.+++|++||||||||||..|||+
T Consensus 231 ~aSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei----~---~~~~~~~~v~~~~~~~~ri~GFGHrvYk~~DPRa 303 (410)
T cd06115 231 LASSGVDVYTAVAGAVGALYGPLHGGANEAVLRMLAEI----G---TVENIPAFIEGVKNRKRKLSGFGHRVYKNYDPRA 303 (410)
T ss_pred HHhcCCCHHHHHHHHHhhccCCcccchHHHHHHHHHHh----C---ChHHHHHHHHHHHhcCCcccCCCCCCCCCCCccH
Confidence 99999999999999999999999999999999999886 5 5689999999999999999999999999999999
Q ss_pred HHHHHHHHhhC---CCChHHHHHHHHHHHHHH
Q 015697 364 TCQREFALKHL---PDDPLFQLVSKLFEVVPP 392 (402)
Q Consensus 364 ~~l~~~a~~~~---~~d~~~~la~~le~~~~~ 392 (402)
++|+++++++. ++++++++++++|+++.+
T Consensus 304 ~~L~~~~~~l~~~~~~~~~~~~a~~~e~~~~~ 335 (410)
T cd06115 304 KIIKKLADEVFEIVGKDPLIEIAVALEKAALS 335 (410)
T ss_pred HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHh
Confidence 99999999974 467999999999998765
No 9
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of ide
Probab=100.00 E-value=2.9e-79 Score=619.63 Aligned_cols=296 Identities=29% Similarity=0.457 Sum_probs=269.9
Q ss_pred cccccccccceeecceecCCCCc-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCC
Q 015697 76 IGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 154 (402)
Q Consensus 76 ~~Glrgv~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~l 154 (402)
..||+||.+++|.||+||+++|+ +||||+|+||+++. +||||+||||+|+|||++|+++|+++|..++.+
T Consensus 6 ~~GL~~v~~~~t~Is~iDg~~G~L~YRGy~I~dLa~~~---------~feev~yLLl~G~LPt~~el~~f~~~L~~~~~l 76 (382)
T cd06107 6 DPGYLNTAVCESSITYIDGDKGILLYRGYPIEQLAESS---------TYEEVAYLLLWGELPTQEQYDEFQRRLSEHMMV 76 (382)
T ss_pred CCCcCCeeeEeeeCeeEeCCCCeEEECCccHHHHHhcC---------CHHHHHHHHhCCCCCCHHHHHHHHHHHHHccCC
Confidence 35999999999999999999996 99999999999985 699999999999999999999999999999999
Q ss_pred CHHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccCCCCCC---CchHHHHHHHHHhhhHHHHHHHHHHhcCC
Q 015697 155 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYW---EPTYEDSLNLIARVPVVAAYVYQRIYKDG 231 (402)
Q Consensus 155 p~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~~~~---~~~~e~a~~LiAklp~iaa~iyr~~~~~~ 231 (402)
|+.|.++|+.||+++|||++|+++|++|++.++.......+ +.|| +..++++++|||++|+|+|++||++.+ .
T Consensus 77 p~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~liA~~p~i~A~~yr~~~g-~ 152 (382)
T cd06107 77 PESVHRLIQTFPRDAHPMGILCAGLSALSAFYPEAIPAHTG---DLYQNNPEVRDKQIIRTLAKMPTIAAAAYCHRIG-R 152 (382)
T ss_pred CHHHHHHHHhCCCCCCcHHHHHHHHHhhcccCccccchhhc---cccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C
Confidence 99999999999999999999999999999865432111111 4455 567778999999999999999998855 3
Q ss_pred cccCCCCCCCHHHHHHHhhCC-------CChHHHHHHHHHHHHhccCCCCCChhHHHHHHhccCCChHHHHHHHhhcccC
Q 015697 232 KIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAG 304 (402)
Q Consensus 232 ~~~~p~~~l~~~~nf~~ml~~-------~~~~~~~~l~~~Lil~aDHeg~n~St~aarvvaSt~sd~y~avaAgi~aL~G 304 (402)
++++|++++||++||++||++ |+++.+++||.+|||||||| +|+||||+|+++||++|+|+|++||+++|+|
T Consensus 153 ~~~~P~~~ls~a~NFL~Ml~g~~~~~~~p~~~~~~~l~~~LiL~aDHg-~n~ST~aaRv~aSt~ad~~s~v~aai~al~G 231 (382)
T cd06107 153 PFVYPRANLSYIENFLYMMGYVDQEPYEPNPRLARALDRLWILHADHE-MNCSTSAARHTGSSLADPISCMAAAIAALYG 231 (382)
T ss_pred CCCCCCCCCCHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHhcccC-CcchhHHHHHHHhcCCcHHHHHHHHHhhccC
Confidence 589999999999999999975 56889999999999999998 9999999999999999999999999999999
Q ss_pred CccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCChHHHHHHHHhhC---CCChHHH
Q 015697 305 PLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQ 381 (402)
Q Consensus 305 plHGgAne~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vyr~~DPRa~~l~~~a~~~~---~~d~~~~ 381 (402)
|+|||||++|++||.++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. +++++++
T Consensus 232 plHGGA~e~v~~~l~ei----~---~~~~~~~~v~~~~~~~~ri~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~ 304 (382)
T cd06107 232 PLHGGANEAALKMLREI----G---TPENVPAFIERVKNGKRRLMGFGHRVYKNYDPRAKVIREILHEVLTEVEKDPLLK 304 (382)
T ss_pred CcccchHHHHHHHHHHh----C---ChHHHHHHHHHHHhcCCCcCCCCCCCCCCCCccHHHHHHHHHHHHHhcCCcHHHH
Confidence 99999999999999887 5 468999999999999999999999999999999999999999874 4589999
Q ss_pred HHHHHHHHHHH
Q 015697 382 LVSKLFEVVPP 392 (402)
Q Consensus 382 la~~le~~~~~ 392 (402)
++.+||+++.+
T Consensus 305 ~a~~ie~~~~~ 315 (382)
T cd06107 305 VAMELERIALE 315 (382)
T ss_pred HHHHHHHHHHH
Confidence 99999997754
No 10
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group is similar to gram-negative Escherichia coli (Ec) CS (type II, gltA) and Arabidopsis thaliana (Ath) peroxisomal (Per) CS. However EcCS and AthPerCS are not found in this group. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers w
Probab=100.00 E-value=5.5e-79 Score=617.93 Aligned_cols=291 Identities=27% Similarity=0.426 Sum_probs=267.5
Q ss_pred ccccccccceeecceecCCCCc-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCC
Q 015697 77 GGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (402)
Q Consensus 77 ~Glrgv~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp 155 (402)
.||+||.+++|+||+||+++|+ +||||+|+||++++ .||||+||||+|+|||++|+++|+++|.+++.+|
T Consensus 7 ~Gl~~v~~~~t~Is~iDg~~G~L~YRGy~I~dL~~~~---------~feEv~yLLl~G~lPt~~el~~f~~~L~~~~~lp 77 (384)
T cd06116 7 PAYLNTASCKSAITYIDGEKGILRYRGYPIEQLAEQS---------SYLEVAYLLLHGELPTKERLAQWVYDITRHTMTH 77 (384)
T ss_pred CCcCCeeEEeeEeeeEeCCCCeEEECCccHHHHhccC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCCC
Confidence 5999999999999999999996 99999999999986 5999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccCCCCCCCchHHHHHHHHHhhhHHHHHHHHHHhcCCcccC
Q 015697 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 235 (402)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~~~~~ 235 (402)
+.+.++++.||+++|||++|+++|++|++++++...+ ...+...+++++|||++|+|+|++||++++. ++++
T Consensus 78 ~~v~~~l~~~p~~~hPM~~L~~~vs~l~~~~~~~~~~-------~~~~~~~~~~~rliA~~p~i~A~~~r~~~g~-~~~~ 149 (384)
T cd06116 78 ENLKKFMDGFRYDAHPMGILISSVAALSTFYPEAKNI-------GDEEQRNKQIIRLIGKMPTIAAFAYRHRLGL-PYVL 149 (384)
T ss_pred HHHHHHHHhcCcCCCcHHHHHHHHHhhhhcCcccccc-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CccC
Confidence 9999999999999999999999999999876553211 1234556788999999999999999998753 5889
Q ss_pred CCCCCCHHHHHHHhhCC-------CChHHHHHHHHHHHHhccCCCCCChhHHHHHHhccCCChHHHHHHHhhcccCCccc
Q 015697 236 KDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHG 308 (402)
Q Consensus 236 p~~~l~~~~nf~~ml~~-------~~~~~~~~l~~~Lil~aDHeg~n~St~aarvvaSt~sd~y~avaAgi~aL~GplHG 308 (402)
|++++||++||++||++ |+++.+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+||
T Consensus 150 p~~~ls~a~Nfl~Ml~g~~~~~~~p~~~~~~~l~~~LiL~ADH~-~n~STfaarv~aSt~ad~ysav~agi~aL~GplHG 228 (384)
T cd06116 150 PDNDLSYTGNFLSMLFKMTEPKYEPNPVLAKALDVLFILHADHE-QNCSTSAMRSVGSSRADPYTAVAAAVAALYGPLHG 228 (384)
T ss_pred CCCCCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhhhccCC-CCchhHHHhhhhccCCCHHHHHHHHHHhccCCccc
Confidence 99999999999999975 57889999999999999998 99999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCChHHHHHHHHhhC---CCChHHHHHHH
Q 015697 309 LANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSK 385 (402)
Q Consensus 309 gAne~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vyr~~DPRa~~l~~~a~~~~---~~d~~~~la~~ 385 (402)
||||+|++||+++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. +.+++++++.+
T Consensus 229 GA~e~v~~~l~ei----~---~~~~~~~~v~~~~~~~~ri~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~ia~~ 301 (384)
T cd06116 229 GANEAVLRMLQQI----G---SPKNIPDFIETVKQGKERLMGFGHRVYKNYDPRARIIKKIADEVFEATGRNPLLDIAVE 301 (384)
T ss_pred chHHHHHHHHHHh----C---ChHHHHHHHHHHHhcCCcccCCCCCCCCCCChHHHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 9999999999886 5 468999999999999999999999999999999999999999874 45799999999
Q ss_pred HHHHHHH
Q 015697 386 LFEVVPP 392 (402)
Q Consensus 386 le~~~~~ 392 (402)
+|+++.+
T Consensus 302 ~e~~~~~ 308 (384)
T cd06116 302 LEKIALE 308 (384)
T ss_pred HHHHHHH
Confidence 9997755
No 11
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-I, one of two CS isozymes in the gram-positive B. subtilis. The majority of CS activity in B. subtilis is provided by the other isozyme, BsCS-II (not included in this group). BsCS-
Probab=100.00 E-value=4.4e-78 Score=605.24 Aligned_cols=289 Identities=25% Similarity=0.337 Sum_probs=271.4
Q ss_pred ccccccccceeecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCC
Q 015697 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (402)
Q Consensus 77 ~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp 155 (402)
.||+|+.+++|+||+||+++| ++||||+|+||++++ +||||+||||+|+|||++|+++|+.+|..++.+|
T Consensus 1 ~Gl~gv~~~~t~Is~idg~~G~L~YRGy~i~dL~~~~---------~feev~~LLl~G~lP~~~el~~f~~~l~~~~~lp 71 (349)
T cd06109 1 PGLEGVVAAETVLSDVDGEAGRLIIRGYSVEDLAGSA---------SFEDVAALLWNGFFPDLPELEEFRAALAAARALP 71 (349)
T ss_pred CCcCCceeeeeeceeEeCCCCeEEECCccHHHHHhhC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCC
Confidence 499999999999999999999 699999999999985 6999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccCCCCCCCchHHHHHHHHHhhhHHHHHHHHHHhcCCcccC
Q 015697 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 235 (402)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~~~~~ 235 (402)
+.+.+++++| +++|||++|+++|++++.+ ..++++++|||++|+|+|++||++.++ +++.
T Consensus 72 ~~v~~~~~~~-~~~~pm~~l~~~~s~~~~~------------------~~~~~a~~liA~~p~i~a~~~r~~~g~-~~~~ 131 (349)
T cd06109 72 DVVAALLPAL-AGLDPMDALRALLALLPDS------------------PDLATALRLLAAAPVITAALLRLSRGK-QPIA 131 (349)
T ss_pred HHHHHHHHhC-CCcCHHHHHHHHHHhcCch------------------hHHHHHHHHHHHHHHHHHHHHHHHcCC-CCcC
Confidence 9999999999 8999999999999999752 246789999999999999999988653 5889
Q ss_pred CCCCCCHHHHHHHhhCC--CChHHHHHHHHHHHHhccCCCCCChhHHHHHHhccCCChHHHHHHHhhcccCCccccchHH
Q 015697 236 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 313 (402)
Q Consensus 236 p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~Lil~aDHeg~n~St~aarvvaSt~sd~y~avaAgi~aL~GplHGgAne~ 313 (402)
|++++||++||++||++ |++.++++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||||+
T Consensus 132 p~~~ls~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHg-~n~ST~aaRv~aSt~ad~~savaagi~al~GplHGGA~e~ 210 (349)
T cd06109 132 PDPSLSHAADYLRMLTGEPPSEAHVRALDAYLVTVADHG-MNASTFTARVIASTEADLTSAVLGAIGALKGPLHGGAPGP 210 (349)
T ss_pred CCCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhHhcccC-CCchhhHHHHHhccCCcHHHHHHHHHHhccCCcccChHHH
Confidence 99999999999999987 78889999999999999997 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHHHH
Q 015697 314 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPI 393 (402)
Q Consensus 314 v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vyr~~DPRa~~l~~~a~~~~~~d~~~~la~~le~~~~~~ 393 (402)
|++||+++ + +.+++++||++.+++|++||||||||||..|||+++|+++++++..+++++++++++|++++++
T Consensus 211 v~~~l~ei----~---~~~~~~~~v~~~l~~~~~i~GfGH~vyk~~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~~ 283 (349)
T cd06109 211 VLDMLDAI----G---TPENAEAWLREALARGERLMGFGHRVYRVRDPRADVLKAAAERLGAPDERLEFAEAVEQAALAL 283 (349)
T ss_pred HHHHHHHh----C---ChhhHHHHHHHHHHcCCeecCCCCCCCCCCCcCHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence 99999886 4 4589999999999999999999999999999999999999999988899999999999999999
Q ss_pred HHhcCCCCC
Q 015697 394 LTKLGKVSN 402 (402)
Q Consensus 394 l~~~~k~~n 402 (402)
+.++.+.||
T Consensus 284 ~~~~~~~r~ 292 (349)
T cd06109 284 LREYKPGRP 292 (349)
T ss_pred HHHhcCCCC
Confidence 888765553
No 12
>PRK12351 methylcitrate synthase; Provisional
Probab=100.00 E-value=4.6e-78 Score=609.75 Aligned_cols=291 Identities=24% Similarity=0.353 Sum_probs=267.7
Q ss_pred ccccccccceeecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCC
Q 015697 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (402)
Q Consensus 77 ~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp 155 (402)
.||+||.+.+|.||.||+++| |+||||+|+||++++ +||||+||||+|+|||++|+++|+.+|..++.+|
T Consensus 10 ~GL~gv~~~~T~is~i~~~~g~L~YRGy~I~dLa~~~---------~feeva~LL~~G~LP~~~el~~f~~~L~~~~~lp 80 (378)
T PRK12351 10 VALSGVVAGNTALCTVGKSGNDLHYRGYDILDLAEHC---------EFEEVAHLLVHGKLPTQAELAAYKTKLKALRGLP 80 (378)
T ss_pred CCCCCeeeccccCeeEecCCCEEEECCccHHHHHhcC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 699999999999999999988 599999999999985 5999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccCCCCCCCchHHHHHHHHHhhhHHHHHHHHHHhcCCcccC
Q 015697 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 235 (402)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~~~~~ 235 (402)
+.|.++|++||+++|||++|+++|++|++.++.. + +..++..++++++|||++|+|+|++||+..+ ++++.
T Consensus 81 ~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~d~~~--~------~~~~~~~~~~a~rliA~~p~i~a~~~r~~~~-~~~~~ 151 (378)
T PRK12351 81 AAVKTVLEAIPAAAHPMDVMRTGVSVLGCLLPEK--E------DHNFSGARDIADRLLASLGSILLYWYHYSHN-GRRIE 151 (378)
T ss_pred HHHHHHHHhCCccCCHHHHHHHHHHhhcccCccc--c------cCChHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccC
Confidence 9999999999999999999999999999865432 1 1234667889999999999999999999876 44554
Q ss_pred -CCCCCCHHHHHHHhhCC--CChHHHHHHHHHHHHhccCCCCCChhHHHHHHhccCCChHHHHHHHhhcccCCccccchH
Q 015697 236 -KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQ 312 (402)
Q Consensus 236 -p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~Lil~aDHeg~n~St~aarvvaSt~sd~y~avaAgi~aL~GplHGgAne 312 (402)
|++++||++||++||++ |++.++++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||||
T Consensus 152 p~~~~ls~a~Nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~-~naST~aaRvvaSt~ad~~sav~agi~aL~GplHGGA~e 230 (378)
T PRK12351 152 VETDDDSIGGHFLHLLHGKKPSESWVKAMHTSLILYAEHE-FNASTFTARVIAGTGSDMYSAITGAIGALRGPKHGGANE 230 (378)
T ss_pred CCCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccC-CchHHHHHHHHhccCCCHHHHHHHHHHhccCCccCchHH
Confidence 57789999999999976 78999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCChHHHHHHHHhh---CCCChHHHHHHHHHHH
Q 015697 313 EVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKH---LPDDPLFQLVSKLFEV 389 (402)
Q Consensus 313 ~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vyr~~DPRa~~l~~~a~~~---~~~d~~~~la~~le~~ 389 (402)
+|++||+++ + +.+++++||++.+++|++||||||||||.+|||+++|+++++++ .++++++++++++|++
T Consensus 231 ~v~~ml~~i----~---~~~~~~~~v~~~l~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~ie~~ 303 (378)
T PRK12351 231 VAFEIQQRY----D---TPDEAEADIRRRVENKEVVIGFGHPVYTISDPRNKVIKEVAKKLSKEAGDTKLYDIAERLETV 303 (378)
T ss_pred HHHHHHHHh----C---CHHHHHHHHHHHHhCCCccccCCCCCCCCCCccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 999999886 5 46899999999999999999999999999999999999999986 3567999999999998
Q ss_pred HHHH
Q 015697 390 VPPI 393 (402)
Q Consensus 390 ~~~~ 393 (402)
+.+.
T Consensus 304 ~~~~ 307 (378)
T PRK12351 304 MWEE 307 (378)
T ss_pred HHHH
Confidence 8765
No 13
>COG0372 GltA Citrate synthase [Energy production and conversion]
Probab=100.00 E-value=5.1e-78 Score=608.84 Aligned_cols=302 Identities=32% Similarity=0.454 Sum_probs=273.3
Q ss_pred cceehhcccccccccccceeecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHH
Q 015697 68 GNITVDMVIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSK 146 (402)
Q Consensus 68 g~~tv~~~~~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~ 146 (402)
++.+..++.+||+|+.+++|.||+||+++| ++||||+|+||+++. +|||++||||+|+|||.+|++.|.+
T Consensus 9 ~~~~~~~~~~Gl~~v~~~~t~is~id~~~g~L~yrGy~i~dla~~~---------~feev~~LLl~G~lPt~~el~~~~~ 79 (390)
T COG0372 9 SDVGRFTYDPGLEGVAACETAISYIDGDGGILRYRGYDIEDLAEKS---------SFEEVAYLLLYGELPTKAELAAFFA 79 (390)
T ss_pred CCccccccCCcccccceeeeeeeEecCCCceEEECCccHHHHHhhc---------CHHHHHHHHHcCcCCChHHHHHHHH
Confidence 677788889999999999999999999999 599999999999984 6999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccCCCCCCCchHHHHHHHHHhhhHHHHHHHHH
Q 015697 147 ELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQR 226 (402)
Q Consensus 147 ~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~~~~~~~~e~a~~LiAklp~iaa~iyr~ 226 (402)
++..++.+|+++..++..+|++.|||++|+++|++|+..++. -... +...+.+++|+|++|+|+|++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~p~~~hpm~~l~~~vs~l~~~~~~------~~~~----~~~~~~a~rlia~~pti~a~~yr~ 149 (390)
T COG0372 80 KLAARRTLPEQVIRLLESLPRDAHPMAVLRTAVSALSAFYPD------KLDL----NDRREAALRLIAKLPTIAAAVYRY 149 (390)
T ss_pred HHHHhcCccHHHHHHHHhCCCCcCcHHHHHHHHHHhcccccc------cccc----chhHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999999999999999999999999888764321 1111 126778999999999999999999
Q ss_pred HhcCCcccCCCCCCCHHHHHHHhhCC--CC-hHHHHHHHHHHHHhccCCCCCChhHHHHHHhccCCChHHHHHHHhhccc
Q 015697 227 IYKDGKIIPKDDSLDYGGNFSHMLGF--DD-PKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLA 303 (402)
Q Consensus 227 ~~~~~~~~~p~~~l~~~~nf~~ml~~--~~-~~~~~~l~~~Lil~aDHeg~n~St~aarvvaSt~sd~y~avaAgi~aL~ 303 (402)
..+. .++.|+++++|++||++||.+ |+ |.++++||.+|||||||| +|+||||+|||+||+||+|+|++|||++|+
T Consensus 150 ~~g~-~~i~p~~~~s~a~nfL~ml~g~~p~~~~~~~a~d~~LiL~ADHe-~NASTftarvvaST~sd~ys~i~agi~aL~ 227 (390)
T COG0372 150 SRGE-PPIAPDPDLSYAENFLYMLFGEPPSPPVEARAMDRALILHADHE-LNASTFTARVVASTGSDLYACIAAGIGALK 227 (390)
T ss_pred hcCC-CCccCCCCccHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHhcCCcHHHHHHHHHHHcC
Confidence 8765 477799999999999999987 56 589999999999999999 999999999999999999999999999999
Q ss_pred CCccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCChHHHHHHHHhhC---CCChHH
Q 015697 304 GPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLF 380 (402)
Q Consensus 304 GplHGgAne~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vyr~~DPRa~~l~~~a~~~~---~~d~~~ 380 (402)
||+||||||+|++||+++ ++ ..+++++||++.|++|++||||||||||++|||+++|+++++++. ++++++
T Consensus 228 GPlHGGAne~v~~ml~ei----~~--~~~~~~~~v~~~l~~~~~imGFGHRVYk~~DPRa~~lk~~a~~l~~~~g~~~~~ 301 (390)
T COG0372 228 GPLHGGANEAVMKMLEEI----GS--SGESAEAYVRKALDRKERIMGFGHRVYKNYDPRAKVLKELAEKLGKELGDLKLY 301 (390)
T ss_pred CCccCChHHHHHHHHHHH----cc--cchhHHHHHHHHHhCCCCcCCCCCCCCCCCCchHHHHHHHHHHHHhhcCchhHH
Confidence 999999999999999987 43 234599999999999999999999999999999999999999984 456899
Q ss_pred HHHHHHHHHHHHHHHh
Q 015697 381 QLVSKLFEVVPPILTK 396 (402)
Q Consensus 381 ~la~~le~~~~~~l~~ 396 (402)
+++.++|+++-+.+..
T Consensus 302 ~~a~~~e~~~l~~~~~ 317 (390)
T COG0372 302 EIAEELEEIALEDLGF 317 (390)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 9999999998776544
No 14
>PRK14036 citrate synthase; Provisional
Probab=100.00 E-value=1.9e-77 Score=605.79 Aligned_cols=296 Identities=28% Similarity=0.420 Sum_probs=272.9
Q ss_pred ccccccccccceeecceecCCCCc-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC
Q 015697 75 VIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 153 (402)
Q Consensus 75 ~~~Glrgv~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~ 153 (402)
+..||+|+.+++|+||+||+++|+ +||||+|+||++++ +||||+||||+|++||++|++.|+.+|..++.
T Consensus 4 ~~~Gl~gv~~~~t~Is~idg~~G~L~yRGy~i~dL~~~~---------~Feev~~LLl~G~lP~~~el~~f~~~L~~~~~ 74 (377)
T PRK14036 4 YRPGLEGVPATQSSISYVDGQKGILEYRGYPIEELAEKS---------SFLETAYLLIWGELPTAEELEEFEQEVRMHRR 74 (377)
T ss_pred CCCccCCCeeeeeeceEEECCCCEEEECCccHHHHHccC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Confidence 346999999999999999999996 99999999999985 69999999999999999999999999999999
Q ss_pred CCHHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccCCCCCCCchHHHHHHHHHhhhHHHHHHHHHHhcCCcc
Q 015697 154 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI 233 (402)
Q Consensus 154 lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~~~ 233 (402)
+|+.|.+++++||++.|||++|+++|++|+..++.. .....+..++++++|+|++|+|+|++||...+ .++
T Consensus 75 lp~~v~~~i~~~p~~~hpm~~L~~~vs~l~~~~~~~--------~~~~~~~~~~~~~rliA~~p~i~a~~~r~~~g-~~~ 145 (377)
T PRK14036 75 VKYRIRDMMKCFPETGHPMDALQASAAALGLFYSRR--------ALDDPEYIRDAVVRLIAKIPTMVAAFQLIRKG-NDP 145 (377)
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhcCccc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCC
Confidence 999999999999999999999999999998754331 11224678899999999999999999887755 458
Q ss_pred cCCCCCCCHHHHHHHhhCC--CChHHHHHHHHHHHHhccCCCCCChhHHHHHHhccCCChHHHHHHHhhcccCCccccch
Q 015697 234 IPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLAN 311 (402)
Q Consensus 234 ~~p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~Lil~aDHeg~n~St~aarvvaSt~sd~y~avaAgi~aL~GplHGgAn 311 (402)
++|++++||++||++||++ |++.++++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+|||||
T Consensus 146 ~~p~~~l~~a~nfl~ml~g~~p~~~~~~~l~~~Lil~ADHg-~naST~aaRv~aSt~ad~ys~v~agi~aL~GplHGGA~ 224 (377)
T PRK14036 146 IQPRDDLDYAANFLYMLTEREPDPLAARIFDRCLILHAEHT-INASTFSARVTASTLTDPYAVIASAVGTLAGPLHGGAN 224 (377)
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhccCC-CCchHHHHHHHHhcCCcHHHHHHHHHHHccCccccChH
Confidence 8999999999999999987 78999999999999999997 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCChHHHHHHHHhh---CCCChHHHHHHHHHH
Q 015697 312 QEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKH---LPDDPLFQLVSKLFE 388 (402)
Q Consensus 312 e~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vyr~~DPRa~~l~~~a~~~---~~~d~~~~la~~le~ 388 (402)
|+|++||.++ + +++++++||++.+++|++||||||||||..|||+++|+++++++ .++++++++++++|+
T Consensus 225 e~v~~ml~~i----~---~~~~~~~~v~~~~~~~~~i~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~~e~ 297 (377)
T PRK14036 225 EDVLAMLEEI----G---SVENVRPYLDERLANKQKIMGFGHREYKVKDPRATILQKLAEELFARFGHDEYYEIALELER 297 (377)
T ss_pred HHHHHHHHHh----C---ChhhHHHHHHHHHHCCCceecCCCCCCCCCCccHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 9999999886 5 56899999999999999999999999999999999999999986 357899999999999
Q ss_pred HHHHHHHh
Q 015697 389 VVPPILTK 396 (402)
Q Consensus 389 ~~~~~l~~ 396 (402)
++++.+++
T Consensus 298 ~~~~~~~~ 305 (377)
T PRK14036 298 VAEERLGP 305 (377)
T ss_pred HHHHHhcc
Confidence 99988754
No 15
>TIGR01798 cit_synth_I citrate synthase I (hexameric type). This model describes one of several distinct but closely homologous classes of citrate synthase, the protein that brings carbon (from acetyl-CoA) into the TCA cycle. This form, class I, is known to be hexameric and allosterically inhibited by NADH in Escherichia coli, Acinetobacter anitratum, Azotobacter vinelandii, Pseudomonas aeruginosa, etc. In most species with a class I citrate synthase, a dimeric class II isozyme is found. The class II enzyme may act primarily on propionyl-CoA to make 2-methylcitrate or be bifunctional, may be found among propionate utilization enzymes, and may be constitutive or induced by propionate. Some members of this model group as class I enzymes, and may be hexameric, but have shown regulatory properties more like class II enzymes.
Probab=100.00 E-value=1.4e-77 Score=611.81 Aligned_cols=306 Identities=27% Similarity=0.408 Sum_probs=270.2
Q ss_pred HHHHHHhhCCccccceehhcccccccccccceeecceecCCCCc-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhC
Q 015697 55 LKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTG 133 (402)
Q Consensus 55 ~k~l~~~~g~~~ig~~tv~~~~~Glrgv~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G 133 (402)
+++++.+.| ..++ ..||+|+.+++|+||+||+++|+ +||||+|+||++++ .||||+||||+|
T Consensus 20 ~~~~~~~~~-----~~~~---~~GL~~v~~~~s~Is~iDg~~G~L~YRGy~I~dL~~~~---------~feEv~yLLl~G 82 (412)
T TIGR01798 20 IRKLYKQTG-----LFTF---DPGFTSTASCESKITFIDGDKGILLYRGYPIDQLATKS---------DYLEVCYLLLNG 82 (412)
T ss_pred hHhhhhcCC-----CCcC---CCCCCCceeEeeeCeeEeCCCCEEEECCccHHHHhccC---------CHHHHHHHHHcC
Confidence 666666533 3333 46999999999999999999996 99999999999985 599999999999
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccCCCCCCCchHHHHHHHH
Q 015697 134 KVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLI 213 (402)
Q Consensus 134 ~lPt~~ql~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~~~~~~~~e~a~~Li 213 (402)
+|||++|+++|+++|.+++.||+.|.++|++||+++|||++|+++|++|+.+++ +... ....+...+++++||
T Consensus 83 ~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~~------~~~~-~~~~~~~~~~a~~li 155 (412)
T TIGR01798 83 ELPTAEQKDEFDDTVTRHTMVHEQVTRFFNGFRRDAHPMAVMVGVVGALSAFYH------DSLD-INDPRHREIAAIRLI 155 (412)
T ss_pred CCCCHHHHHHHHHHHHHccCCCHHHHHHHHhCCCcCChHHHHHHHHHHHhhhCc------cccc-cCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999986432 2111 011234567899999
Q ss_pred HhhhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHHhhCC-------CChHHHHHHHHHHHHhccCCCCCChhHHHHHHhc
Q 015697 214 ARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVAS 286 (402)
Q Consensus 214 Aklp~iaa~iyr~~~~~~~~~~p~~~l~~~~nf~~ml~~-------~~~~~~~~l~~~Lil~aDHeg~n~St~aarvvaS 286 (402)
|++|+|+|++||++.+ .++++|++++||++||++||++ +++.++++||.+|||||||| +|+||||+|+++|
T Consensus 156 A~~p~i~A~~yr~~~g-~~~i~p~~~ls~a~Nfl~Ml~g~~~~~~~p~~~~~~~l~~~LiL~aDHg-~n~STfaaRv~aS 233 (412)
T TIGR01798 156 AKIPTLAAMSYKYSIG-QPFVYPRNDLSYAENFLHMMFATPCEDYKVNPVLARAMDRIFILHADHE-QNASTSTVRLAGS 233 (412)
T ss_pred HHHHHHHHHHHHHhCC-CCCcCCCCCCCHHHHHHHHhcCCCCccCCCCHHHHHHHHHHHHHhhcCC-CCcccceeeeeec
Confidence 9999999999998755 3588999999999999999974 57889999999999999998 9999999999999
Q ss_pred cCCChHHHHHHHhhcccCCccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC--CcccccCCCCCCCCCCChH
Q 015697 287 ALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSG--KVVPGFGHGVLRKTDPRYT 364 (402)
Q Consensus 287 t~sd~y~avaAgi~aL~GplHGgAne~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g--~~IpGfGH~Vyr~~DPRa~ 364 (402)
|++|+|+|++|||++|+||+||||||+|++||.++ + +++++++||++.++++ ++||||||||||..|||++
T Consensus 234 t~ad~ysav~agi~aL~GplHGGA~e~v~~ml~ei----~---~~~~~~~~v~~~~~~~~~~~i~GFGHrvyk~~DPRa~ 306 (412)
T TIGR01798 234 SGANPFACIAAGIAALWGPAHGGANEAALKMLEEI----G---SVKNIPEFIKKVKDKNDPFRLMGFGHRVYKNYDPRAK 306 (412)
T ss_pred CCCCHHHHHHHHhhhccCccccchHHHHHHHHHHh----C---ChhHHHHHHHHHHhcCCCccccCCCCCCCCCCCccHH
Confidence 99999999999999999999999999999999886 5 4589999999999888 5999999999999999999
Q ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHHHH
Q 015697 365 CQREFALKHL-----PDDPLFQLVSKLFEVVPPI 393 (402)
Q Consensus 365 ~l~~~a~~~~-----~~d~~~~la~~le~~~~~~ 393 (402)
+|+++++++. ..++++++++++|+++.+.
T Consensus 307 ~L~~~a~~l~~~~g~~~~~~~~~a~~~e~~~~~~ 340 (412)
T TIGR01798 307 VMRETCHEVLKELGLHDDPLFKLAMELEKIALND 340 (412)
T ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHhh
Confidence 9999998852 2478999999999977543
No 16
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate, but has a partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate, prefer PrCoA as substrate, but can also can use AcCoA. Re 2-MCS1 at a low rate can use butyryl-CoA and valeryl-CoA. A second Ralstonia eu
Probab=100.00 E-value=2.3e-77 Score=603.12 Aligned_cols=290 Identities=25% Similarity=0.348 Sum_probs=265.9
Q ss_pred cccccccceeecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCH
Q 015697 78 GMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPD 156 (402)
Q Consensus 78 Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp~ 156 (402)
||+||.+.+|.||+||+++| |+||||+|+||++++ +||||+||||+|+|||++|+++|+++|..++.+|+
T Consensus 2 GL~gv~~~~T~is~v~~~~g~L~YRGy~i~dLa~~~---------~FEeva~LL~~G~lPt~~el~~f~~~L~~~~~lp~ 72 (366)
T cd06117 2 ALSGVAAGNTALCTVGRSGNDLHYRGYDILDLAEKC---------EFEEVAHLLVHGKLPTKSELAAYKTKLKSLRGLPA 72 (366)
T ss_pred CCCCeeEecccCeeeecccCEEEECCccHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCH
Confidence 99999999999999999998 599999999999986 59999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccCCCCCCCchHHHHHHHHHhhhHHHHHHHHHHhcCCcccCC
Q 015697 157 YVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPK 236 (402)
Q Consensus 157 ~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~~~~~p 236 (402)
.+.+++++||+++|||++|+++|++|++++++... ...+...+++++|||++|+|+|++||++.+ ++++.|
T Consensus 73 ~v~~~i~~~p~~~hpm~~l~~~vs~l~~~~~~~~~--------~~~~~~~~~a~rlia~~p~i~a~~~r~~~~-~~~i~p 143 (366)
T cd06117 73 NVKTALEQLPAAAHPMDVMRTGVSVLGCVLPEKED--------HPVSGARDIADRLMASLGSILLYWYHYSHN-GKRIEV 143 (366)
T ss_pred HHHHHHHhCCccCCHHHHHHHHHhhhcccCccccc--------CChHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccCC
Confidence 99999999999999999999999999987765311 123456788999999999999999998765 456665
Q ss_pred -CCCCCHHHHHHHhhCC--CChHHHHHHHHHHHHhccCCCCCChhHHHHHHhccCCChHHHHHHHhhcccCCccccchHH
Q 015697 237 -DDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 313 (402)
Q Consensus 237 -~~~l~~~~nf~~ml~~--~~~~~~~~l~~~Lil~aDHeg~n~St~aarvvaSt~sd~y~avaAgi~aL~GplHGgAne~ 313 (402)
++++||++||++||++ |++.++++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||||.
T Consensus 144 ~~~~~s~a~Nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg-~n~ST~aarv~aSt~ad~~sav~agi~aL~GplHGGA~e~ 222 (366)
T cd06117 144 ETDDDSIGGHFLHLLHGEKPSESWEKAMHISLILYAEHE-FNASTFTARVIAGTGSDMYSAITGAIGALRGPKHGGANEV 222 (366)
T ss_pred CCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccC-CchHHHHHHHHHccCCcHHHHHHHHHHhccCCccCchHHH
Confidence 6689999999999987 78999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCChHHHHHHHHhhC---CCChHHHHHHHHHHHH
Q 015697 314 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVV 390 (402)
Q Consensus 314 v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vyr~~DPRa~~l~~~a~~~~---~~d~~~~la~~le~~~ 390 (402)
|++||.++ + +.+++++||++.+++|++||||||||||..|||+++|+++++++. +++++++++.++++++
T Consensus 223 v~~~l~~i----~---~~~~~~~~i~~~~~~~~~i~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~~~~ie~~~ 295 (366)
T cd06117 223 AFEIQQRY----E---SADEAEADIRRRVENKEVVIGFGHPVYTIADPRNQVIKEVAKQLSKEGGDMKMFDIAERLETVM 295 (366)
T ss_pred HHHHHHHh----C---CHHHHHHHHHHHHhcCCcccCCCCCCCCCCCchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999876 5 468999999999999999999999999999999999999999974 4578999999999988
Q ss_pred HHH
Q 015697 391 PPI 393 (402)
Q Consensus 391 ~~~ 393 (402)
.+.
T Consensus 296 ~~~ 298 (366)
T cd06117 296 WEE 298 (366)
T ss_pred HHH
Confidence 654
No 17
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MC
Probab=100.00 E-value=2.2e-77 Score=602.33 Aligned_cols=288 Identities=26% Similarity=0.415 Sum_probs=264.6
Q ss_pred ccccccccceeecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCC
Q 015697 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (402)
Q Consensus 77 ~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp 155 (402)
.||+||.+++|+||+||+++| ++||||+|+||+++. +||||+||||+|+|||++|+++|+.+|..++.+|
T Consensus 1 ~GL~gv~~~~t~is~id~~~g~L~yRGy~i~dLa~~~---------sfeeva~LLl~G~lPt~~el~~f~~~L~~~~~lp 71 (363)
T cd06108 1 GGLAGVVAGQTAISTVGKGGKGLTYRGYDIEDLAENA---------TFEEVAYLLLYGKLPTRKQLDAYKTKLVALRRLP 71 (363)
T ss_pred CCCCCCeeeeeeCceEeCCCCEEEECCccHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 499999999999999999997 699999999999974 6999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccCCCCCCCchHHHHHHHHHhhhHHHHHHHHHHhcCCccc-
Q 015697 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKII- 234 (402)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~~~~- 234 (402)
+.|.+++++||+++|||++|+++|++|++.++... -+..++++++|||++|+|+|++||++.++ .++
T Consensus 72 ~~v~~~i~~~p~~~hpm~~L~~~vs~l~~~d~~~~-----------~~~~~~~a~rlia~~p~i~a~~~r~~~~~-~~~~ 139 (363)
T cd06108 72 AALKTVLELIPKDSHPMDVMRTGCSMLGCLEPENE-----------FSQQYEIAIRLLAIFPSILLYWYHYSHSG-KRIE 139 (363)
T ss_pred HHHHHHHHhCCCCCChHHHHHHHHHhhhhcCCccc-----------cHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CccC
Confidence 99999999999999999999999999987553320 13456899999999999999999988664 455
Q ss_pred CCCCCCCHHHHHHHhhCC--CChHHHHHHHHHHHHhccCCCCCChhHHHHHHhccCCChHHHHHHHhhcccCCccccchH
Q 015697 235 PKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQ 312 (402)
Q Consensus 235 ~p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~Lil~aDHeg~n~St~aarvvaSt~sd~y~avaAgi~aL~GplHGgAne 312 (402)
+|++++||++||++||++ |++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+|||||+
T Consensus 140 p~~~~~s~a~nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~-~n~St~aaRv~aSt~ad~~sav~agi~al~GplHGGA~e 218 (363)
T cd06108 140 TETDEDSIAGHFLHLLHGKKPGELEIKAMDVSLILYAEHE-FNASTFAARVTASTLSDFYSAITGAIGTLRGPLHGGANE 218 (363)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhccCC-CcchHHHHHHHhccCCCHHHHHHHHHHhccCCcccchHH
Confidence 458889999999999987 78999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCChHHHHHHHHhh---CCCChHHHHHHHHHHH
Q 015697 313 EVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKH---LPDDPLFQLVSKLFEV 389 (402)
Q Consensus 313 ~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vyr~~DPRa~~l~~~a~~~---~~~d~~~~la~~le~~ 389 (402)
+|++||+++ + +.+++++||++.+++|++||||||||||..|||+++|+++++++ .+++++++++.+++++
T Consensus 219 ~v~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GFGHrvyk~~DPRa~~L~~~a~~l~~~~~~~~~~~~a~~ie~~ 291 (363)
T cd06108 219 AAMELIERF----K---SPEEAEQGLLEKLERKELIMGFGHRVYKEGDPRSDIIKKWSKKLSEEGGDPLLYQISERIEEV 291 (363)
T ss_pred HHHHHHHHh----C---CHHHHHHHHHHHHhcCCeecCCCCCCCCCCCccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 999999887 4 46899999999999999999999999999999999999999986 3578999999999998
Q ss_pred HHHH
Q 015697 390 VPPI 393 (402)
Q Consensus 390 ~~~~ 393 (402)
+.+.
T Consensus 292 ~~~~ 295 (363)
T cd06108 292 MWEE 295 (363)
T ss_pred HHHh
Confidence 8654
No 18
>PRK14032 citrate synthase; Provisional
Probab=100.00 E-value=6.7e-77 Score=612.11 Aligned_cols=330 Identities=27% Similarity=0.399 Sum_probs=288.0
Q ss_pred HhHCHHHHHHHHH-HHHhhCCccccceehhccccccc-----ccccceeecceecCC----------CC-ceecCCCHHH
Q 015697 45 KEMIPEQQERLKK-VKSELGKAQLGNITVDMVIGGMR-----GMTGLLWETSLLDPD----------EG-IRFRGLSIPE 107 (402)
Q Consensus 45 ~~~ip~~~~~~k~-l~~~~g~~~ig~~tv~~~~~Glr-----gv~~~~t~iS~iD~~----------~G-i~yRGy~I~e 107 (402)
.+.+|+++|.+.. +.++|. + ..||+ ||.+.+|.||+||++ +| |+||||+|+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~--------~---~~GL~~~~~~gv~~~~t~is~v~~~~~~dg~~~~~~G~L~YRGy~I~d 77 (447)
T PRK14032 9 LSELCEKNNKIDPELYDKYD--------V---KRGLRNEDGTGVLVGLTNIGDVHGYEIDDGEKIPDEGKLYYRGYDIKD 77 (447)
T ss_pred HHHHHHHcCCcCHHHHHHhC--------C---CcccccCCCCCeEEeeeEEeeeeceeecCCcccCCCCceeECCccHHH
Confidence 3567777776432 344443 2 36999 999999999999984 47 6999999999
Q ss_pred HhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCHH-HHHHHhcCCCCCChHHHHHHHHHHhhccc
Q 015697 108 CQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDY-VYKAIDALPVTAHPMTQFASGVMALQVQS 186 (402)
Q Consensus 108 L~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp~~-v~~~i~~lP~~~hPM~~l~~av~aL~~~s 186 (402)
|++++||+ ++.+||||+||||+|+|||++|++.|+++|..++.+|+. +.++++++| +.|||++|+++|++|++++
T Consensus 78 La~~~~~~---~~~~FeEv~~LLl~G~LPt~~el~~f~~~L~~~~~lp~~~v~~~i~~~p-~~hPM~~L~a~vsaL~~~~ 153 (447)
T PRK14032 78 LVNGFLKE---KRFGFEEVAYLLLFGELPTKEELAEFTELLGDYRELPDGFTRDMILKAP-SKDIMNSLARSVLALYSYD 153 (447)
T ss_pred HHhhcccc---cCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHhCC-CcCHHHHHHHHHHhhhhcC
Confidence 99999875 455899999999999999999999999999999999999 899999999 7899999999999999865
Q ss_pred hhhHHhhhccCCCCCCCchHHHHHHHHHhhhHHHHHHHHHH--hc-CCc--ccCCCCCCCHHHHHHHhhCC---CChHHH
Q 015697 187 EFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRI--YK-DGK--IIPKDDSLDYGGNFSHMLGF---DDPKML 258 (402)
Q Consensus 187 ~f~~~y~~~~~k~~~~~~~~e~a~~LiAklp~iaa~iyr~~--~~-~~~--~~~p~~~l~~~~nf~~ml~~---~~~~~~ 258 (402)
+.. .+.+|++.++++++|||++|+|+|++||.. +. ++. +++|++++||++||++||++ +++..+
T Consensus 154 ~~~--------~~~~~~~~~~~a~rLiA~~p~i~A~~yr~~~~~~~g~~~~~~~p~~~ls~a~nfl~ml~g~~~p~~~~~ 225 (447)
T PRK14032 154 DNP--------DDTSIDNVLRQSISLIARFPTLAVYAYQAYRHYHDGKSLYIHPPKPELSTAENILYMLRPDNKYTELEA 225 (447)
T ss_pred CCc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccCCCCCCCHHHHHHHHhccCCCCCHHHH
Confidence 442 124589999999999999999999999942 22 233 45799999999999999975 578889
Q ss_pred HHHHHHHHHhccCCCCCChhHHHHHHhccCCChHHHHHHHhhcccCCccccchHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 015697 259 ELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYV 338 (402)
Q Consensus 259 ~~l~~~Lil~aDHeg~n~St~aarvvaSt~sd~y~avaAgi~aL~GplHGgAne~v~~~l~~i~~~ig~~~s~~~~~~~v 338 (402)
++||++||||||||++|+||||+|+++||++|+|+|++|||++|+||+||||||+|++||.++.+..++..+++++++||
T Consensus 226 ~~ld~~LiL~ADHg~~naSTfaaRv~aSt~ad~ysavaagi~aL~GplHGGA~e~v~~~l~ei~~~~~~~~s~~~v~~~v 305 (447)
T PRK14032 226 RLLDLALVLHAEHGGGNNSTFTTRVVSSSGTDTYSAIAAAIGSLKGPKHGGANIKVMEMFEDIKENVKDWEDEDEIADYL 305 (447)
T ss_pred HHHHHHHHHHhccCCCchhHHHHHHHHccCCcHHHHHHHHHHhccCccccCHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Confidence 99999999999999789999999999999999999999999999999999999999999999976555555788999999
Q ss_pred HHHHh-----CCCcccccCCCCCCCCCCChHHHHHHHHhhC---CCChHHHHHHHHHHHHHHHHHhc
Q 015697 339 WKTLN-----SGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVVPPILTKL 397 (402)
Q Consensus 339 ~~~l~-----~g~~IpGfGH~Vyr~~DPRa~~l~~~a~~~~---~~d~~~~la~~le~~~~~~l~~~ 397 (402)
++.++ +|++||||||||||..|||+++|+++++++. +.+++++++..+|+++.+++.+.
T Consensus 306 ~~~l~~~~~~~~~ri~GFGHrvyk~~DPRa~~L~~~~~~l~~~~g~~~~~~~~~~~e~~~~~~~~~~ 372 (447)
T PRK14032 306 TKILNKEAFDKSGLIYGMGHAVYTISDPRAVILKKFAEKLAKEKGREEEFNLYEKIEKLAPELIAEE 372 (447)
T ss_pred HHHHhccccccCCcccCCCCCCCCCCCccHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHh
Confidence 99987 5689999999999999999999999999874 45678999999999998877655
No 19
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=100.00 E-value=5.9e-77 Score=602.00 Aligned_cols=298 Identities=29% Similarity=0.439 Sum_probs=275.7
Q ss_pred ccccccccceeecceecCCCCc-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCC
Q 015697 77 GGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (402)
Q Consensus 77 ~Glrgv~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp 155 (402)
.||+||.+++|+||+||+++|+ +||||+|+||+++. +||||+||||+|++||++|++.|+.+|.+++.+|
T Consensus 3 ~Gl~gv~~~~t~is~id~~~G~L~yRGy~i~dL~~~~---------~Feev~~LLl~G~lP~~~el~~~~~~L~~~~~lp 73 (373)
T cd06112 3 PGLAGVPAAESSISYIDGKNGILEYRGYDIEELAEYS---------SFEEVALLLLDGDLPTAAELEEFDKELRQHRRVK 73 (373)
T ss_pred CccCCCeeeeeeceEEeCCCCEEEECCccHHHHhcCC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 6999999999999999999996 99999999999984 6999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccCCCCCCCchHHHHHHHHHhhhHHHHHHHHHHhcCCcccC
Q 015697 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 235 (402)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~~~~~ 235 (402)
+.|.+++++||++.|||++|+++|++|++++++... .+ ++|++.++++++|||++|+|+|++||+..+ .+++.
T Consensus 74 ~~v~~~i~~~p~~~hpm~~L~~~vs~l~~~~~~~~~-----~~-~~~~~~~~~a~~liA~~p~i~a~~~r~~~g-~~~~~ 146 (373)
T cd06112 74 YNIRDMMKCFPETGHPMDMLQATVAALGMFYPKPEV-----LK-PNPDYIDAATVKLIAKMPTLVAMWARIRNG-DDPIE 146 (373)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhhhccCccccc-----cc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCcC
Confidence 999999999999999999999999999988766421 11 368899999999999999999999988755 35889
Q ss_pred CCCCCCHHHHHHHhhCC--CChHHHHHHHHHHHHhccCCCCCChhHHHHHHhccCCChHHHHHHHhhcccCCccccchHH
Q 015697 236 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 313 (402)
Q Consensus 236 p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~Lil~aDHeg~n~St~aarvvaSt~sd~y~avaAgi~aL~GplHGgAne~ 313 (402)
|++++||++||++||++ |++..+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+||||||+
T Consensus 147 p~~~ls~~~nfl~ml~g~~p~~~~~~~l~~~Lil~aDHg-~n~STfaaRvvaSt~ad~~s~~~aai~al~GplHGGA~e~ 225 (373)
T cd06112 147 PRPDLDYAENFLYMLFGEEPDPATAKILDACLILHAEHT-MNASTFSALVTGSTLADPYAVISSAIGTLSGPLHGGANED 225 (373)
T ss_pred CCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCC-CCchHHHHHHHHhcCCcHHHHHHHHHHhccCccccchHHH
Confidence 99999999999999987 78899999999999999997 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCChHHHHHHHHhhCC----CChHHHHHHHHHHH
Q 015697 314 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLP----DDPLFQLVSKLFEV 389 (402)
Q Consensus 314 v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vyr~~DPRa~~l~~~a~~~~~----~d~~~~la~~le~~ 389 (402)
|++||.++ + +++++++||++.+++|++||||||||||..|||+++|+++++++.. .++++++++++|++
T Consensus 226 ~~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GfGH~vyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~i~~~~e~~ 298 (373)
T cd06112 226 VLEMLEEI----G---SPENVKAYLDKKLANKQKIWGFGHRVYKTKDPRATILQKLAEDLFAKMGELSKLYEIALEVERL 298 (373)
T ss_pred HHHHHHHh----C---CHHHHHHHHHHHHhcCCeeeCCCCccCCCCCcHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 99999886 5 5689999999999999999999999999999999999999999853 57899999999999
Q ss_pred HHHHHHhcC
Q 015697 390 VPPILTKLG 398 (402)
Q Consensus 390 ~~~~l~~~~ 398 (402)
+.+.+++.+
T Consensus 299 ~~~~~~~k~ 307 (373)
T cd06112 299 CEELLGHKG 307 (373)
T ss_pred HHHHhCcCC
Confidence 987765433
No 20
>PRK05614 gltA type II citrate synthase; Reviewed
Probab=100.00 E-value=1.3e-76 Score=606.06 Aligned_cols=305 Identities=26% Similarity=0.413 Sum_probs=271.2
Q ss_pred HHHHHHhhCCccccceehhcccccccccccceeecceecCCCCc-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhC
Q 015697 55 LKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTG 133 (402)
Q Consensus 55 ~k~l~~~~g~~~ig~~tv~~~~~Glrgv~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G 133 (402)
+++++++.| .+++| .||+|+.+++|+||+||+++|+ +||||+|+||+++. +||||+||||+|
T Consensus 33 ~~~~~~~~~-----~~~~~---~Gl~~~~~~~S~Is~iDg~~G~L~YRGy~i~dLa~~~---------~feEva~LLl~G 95 (419)
T PRK05614 33 IRKLYGSTG-----YFTYD---PGFTSTASCESKITYIDGDKGILLYRGYPIEQLAEKS---------DFLEVCYLLLYG 95 (419)
T ss_pred hHhhhhccC-----CcccC---CccCCceeeeeeceeEeCCCCEEEECCccHHHHHhcC---------CHHHHHHHHHcC
Confidence 667777643 44544 5999999999999999999996 99999999999985 699999999999
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccCCCCCCCchHHHHHHHH
Q 015697 134 KVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLI 213 (402)
Q Consensus 134 ~lPt~~ql~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~~~~~~~~e~a~~Li 213 (402)
+|||++|++.|+++|..++.+|+.+.++++++|+++|||++|+++|++|+.++ ++...+.+ ++...+++++||
T Consensus 96 ~LP~~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~------~~~~~~~~-~~~~~~~a~rli 168 (419)
T PRK05614 96 ELPTAEQKAEFDTTVTRHTMVHEQLKRFFRGFRRDAHPMAVLCGVVGALSAFY------HDSLDIND-PEHREIAAIRLI 168 (419)
T ss_pred cCCCHHHHHHHHHhHhhccCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcC------ccccCCCC-HHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998643 22222233 335567899999
Q ss_pred HhhhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHHhhCC-------CChHHHHHHHHHHHHhccCCCCCChhHHHHHHhc
Q 015697 214 ARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVAS 286 (402)
Q Consensus 214 Aklp~iaa~iyr~~~~~~~~~~p~~~l~~~~nf~~ml~~-------~~~~~~~~l~~~Lil~aDHeg~n~St~aarvvaS 286 (402)
|++|+|+|++||++.+ .++++|++++||++||++|+.+ +++..+++||++|||||||| +|+||||+|+++|
T Consensus 169 a~~p~i~A~~~r~~~g-~~~~~p~~~ls~a~nfl~ml~g~~~~~~~~~~~~~~~ld~~LiL~ADH~-~n~STfa~RvvaS 246 (419)
T PRK05614 169 AKMPTLAAMAYKYSIG-QPFVYPRNDLSYAENFLRMMFATPCEEYEVNPVLVRALDRIFILHADHE-QNASTSTVRLAGS 246 (419)
T ss_pred HHHHHHHHHHHHHhCC-CCCCCCCCccCHHHHHHHHHhCCCCccCCCCHHHHHHHHHHHhhhccCC-CCcchHHHhhhhc
Confidence 9999999999998765 3588999999999999999964 46778999999999999998 9999999999999
Q ss_pred cCCChHHHHHHHhhcccCCccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh--CCCcccccCCCCCCCCCCChH
Q 015697 287 ALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLN--SGKVVPGFGHGVLRKTDPRYT 364 (402)
Q Consensus 287 t~sd~y~avaAgi~aL~GplHGgAne~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~--~g~~IpGfGH~Vyr~~DPRa~ 364 (402)
|++|+|+|++|||++|+||+||||||+|++||.++ + +.+++++||+++++ +|++||||||||||..|||++
T Consensus 247 t~adlysav~agi~aL~GplHGGA~e~v~~~l~~i----~---~~~~~~~~i~~~~~~~~~~~i~GFGHrvyk~~DPRa~ 319 (419)
T PRK05614 247 SGANPFACIAAGIAALWGPAHGGANEAVLKMLEEI----G---SVDNIPEFIARAKDKNDGFRLMGFGHRVYKNYDPRAK 319 (419)
T ss_pred cCCCHHHHHHHHHhhcCCCcccChHHHHHHHHHHh----C---CchhHHHHHHHHHhccCCccccCCCCCCCCCCCCCHH
Confidence 99999999999999999999999999999999886 5 45899999999976 456999999999999999999
Q ss_pred HHHHHHHhh---CC-CChHHHHHHHHHHHHHH
Q 015697 365 CQREFALKH---LP-DDPLFQLVSKLFEVVPP 392 (402)
Q Consensus 365 ~l~~~a~~~---~~-~d~~~~la~~le~~~~~ 392 (402)
+|+++++++ .+ +++++++++++|+++.+
T Consensus 320 ~l~~~a~~l~~~~~~~~~~~~ia~~ie~~~~~ 351 (419)
T PRK05614 320 IMRETCHEVLKELGLNDPLLEVAMELEEIALN 351 (419)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Confidence 999999864 33 78999999999997754
No 21
>PRK14035 citrate synthase; Provisional
Probab=100.00 E-value=2.6e-76 Score=596.09 Aligned_cols=292 Identities=25% Similarity=0.354 Sum_probs=269.5
Q ss_pred ccccccccccceeecceecCCCCceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCC
Q 015697 75 VIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 154 (402)
Q Consensus 75 ~~~Glrgv~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~l 154 (402)
+..||+||.+++|+||+||++ +++||||+|+||+++. +||||+||||+|+|||++|+++|+.+|..++.+
T Consensus 3 ~~~Gl~~v~~~~s~Is~id~~-~L~YRGy~i~dLa~~~---------~Feeva~LLl~G~lP~~~el~~f~~~L~~~~~l 72 (371)
T PRK14035 3 LQRGLEGVIAAETKISSIIDS-QLTYAGYDIDDLAENA---------SFEEVIFLLWNYRLPTEEELAHLKGKLRKYMTL 72 (371)
T ss_pred CCCCCCCceEeeeeeeEecCC-EeEECCccHHHHHhcC---------CHHHHHHHHHCCcCCCHHHHHHHHHHHHHcCCC
Confidence 457999999999999999986 5999999999999974 699999999999999999999999999999999
Q ss_pred CHHHHHHHhcCC-CCCChHHHHHHHHHHhhccchhhHHhhhccCCCCCCCchHHHHHHHHHhhhHHHHHHHHHHhcCCcc
Q 015697 155 PDYVYKAIDALP-VTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI 233 (402)
Q Consensus 155 p~~v~~~i~~lP-~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~~~ 233 (402)
|+.|.+++..+| ++.|||++|+++|++|++++++. .+..|+..++++++|||++|+|+|++||++.+ .++
T Consensus 73 p~~v~~~i~~~~~~~~hpm~~l~~~vs~l~~~~~~~--------~~~~~~~~~~~a~rliA~~p~i~A~~~r~~~g-~~~ 143 (371)
T PRK14035 73 NDRVYQHFEEYSTDHVHPMTALRTSVSYLAHFDPDA--------EEESDEARYERAIRIQAKVASLVTAFARVRQG-KEP 143 (371)
T ss_pred CHHHHHHHHhcCCcCCCHHHHHHHHHHHHhccCccc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCC
Confidence 999999999976 68999999999999999876653 12357889999999999999999999998654 358
Q ss_pred cCCCCCCCHHHHHHHhhCC--CChHHHHHHHHHHHHhccCCCCCChhHHHHHHhccCCChHHHHHHHhhcccCCccccch
Q 015697 234 IPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLAN 311 (402)
Q Consensus 234 ~~p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~Lil~aDHeg~n~St~aarvvaSt~sd~y~avaAgi~aL~GplHGgAn 311 (402)
+.|++++||++||++||++ |++..+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+|||||
T Consensus 144 ~~p~~~ls~~~nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg-~naST~aaRv~aSt~ad~~sav~Agi~al~GplHGGA~ 222 (371)
T PRK14035 144 LKPRPDLSYAANFLYMLRGELPTDIEVEAFNKALVLHADHE-LNASTFTARCAVSSLSDMYSGVVAAVGSLKGPLHGGAN 222 (371)
T ss_pred CCCCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHhccCC-CCchHHHHHHHHhcCCcHHHHHHHHHHhccCccccChH
Confidence 8999999999999999986 78889999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCChHHHHHHHHhhC---CCChHHHHHHHHHH
Q 015697 312 QEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFE 388 (402)
Q Consensus 312 e~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vyr~~DPRa~~l~~~a~~~~---~~d~~~~la~~le~ 388 (402)
|+|++||.++ + +.+++++||++.+++|++||||||||||..|||+++|+++++++. +++++++++.++++
T Consensus 223 e~v~~~l~~i----~---~~~~~~~~v~~~~~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~ie~ 295 (371)
T PRK14035 223 ERVMDMLSEI----R---SIGDVDAYLDEKFANKEKIMGFGHRVYKDGDPRAKYLREMSRKITKGTGREELFEMSVKIEK 295 (371)
T ss_pred HHHHHHHHHh----C---ChHHHHHHHHHHHhcCCcccCCCCCCCCCCCccHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 9999999987 4 468999999999999999999999999999999999999999975 56899999999999
Q ss_pred HHHHH
Q 015697 389 VVPPI 393 (402)
Q Consensus 389 ~~~~~ 393 (402)
++.+.
T Consensus 296 ~~~~~ 300 (371)
T PRK14035 296 RMKEE 300 (371)
T ss_pred HHHHh
Confidence 88664
No 22
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=100.00 E-value=4.5e-76 Score=600.79 Aligned_cols=310 Identities=27% Similarity=0.398 Sum_probs=277.1
Q ss_pred ccccceeeccee------cCC----CC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 015697 81 GMTGLLWETSLL------DPD----EG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELR 149 (402)
Q Consensus 81 gv~~~~t~iS~i------D~~----~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~ 149 (402)
||.+.+|.||+| |++ +| |+||||+|+||++++||+ ++++||||+||||+|+|||++|++.|+++|.
T Consensus 10 gv~~~~t~is~i~~~~~idg~~~~~~G~L~yRGy~I~dLa~~~p~~---~~~sFEev~yLLl~G~LPt~~el~~f~~~L~ 86 (406)
T cd06113 10 GVLAGLTNISDVVGYKIIDGEKVPCPGKLYYRGYDVEDLVNGAQKE---NRFGFEETAYLLLFGYLPNKEELEEFCEILS 86 (406)
T ss_pred ceEeecceeeeeeeeeecCCcccCCCCeeeECCCcHHHHHhhcccc---cCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 678999999999 899 88 599999999999999874 3568999999999999999999999999999
Q ss_pred hhCCCCHHH-HHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccCCCCCCCchHHHHHHHHHhhhHHHHHHHHHHh
Q 015697 150 DRATVPDYV-YKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIY 228 (402)
Q Consensus 150 ~~~~lp~~v-~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~~~~~~~~e~a~~LiAklp~iaa~iyr~~~ 228 (402)
+++.+|+.+ .++++++|. .|||++|+++|++|+.+++. .++.+|+..++++++|||++|+|+|++||.+.
T Consensus 87 ~~~~lp~~~~~~~i~~~p~-~hpM~~L~a~v~~l~~~~~~--------~~~~~~~~~~~~a~rLiA~~p~i~A~~yr~~~ 157 (406)
T cd06113 87 SYRTLPDNFVEDVILKAPS-KDIMNKLQRSVLALYSYDDK--------PDDISLENVLRQSIQLIARLPTIAVYAYQAKR 157 (406)
T ss_pred HhcCCCHHHHHHHHHhCCC-cCHHHHHHHHHHhccccCCC--------cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999985 669999995 89999999999999976543 23457999999999999999999999999643
Q ss_pred --cCCc---ccCCCCCCCHHHHHHHhhCC---CChHHHHHHHHHHHHhccCCCCCChhHHHHHHhccCCChHHHHHHHhh
Q 015697 229 --KDGK---IIPKDDSLDYGGNFSHMLGF---DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALN 300 (402)
Q Consensus 229 --~~~~---~~~p~~~l~~~~nf~~ml~~---~~~~~~~~l~~~Lil~aDHeg~n~St~aarvvaSt~sd~y~avaAgi~ 300 (402)
.+++ +++|++++||++||++||++ |++..+++||++||||||||++|+||||+|+++||++|+|+|++|||+
T Consensus 158 ~~~~~~~~~~~~p~~~ls~a~nfl~ml~g~~~p~~~~~~~l~~~Lvl~ADHg~~naST~aaRv~aSt~ad~~~avaagi~ 237 (406)
T cd06113 158 HYYDGESLYIHHPQPELSTAENILSMLRPDKKYTELEAKLLDLCLVLHAEHGGGNNSTFTTRVVSSSGTDTYSAIAAAIG 237 (406)
T ss_pred hhccCCCccccCCCCCCCHHHHHHHHhccCCCCCHHHHHHHHHHHhhhhccCCCcchHHHHHHHHccCCCHHHHHHHHHH
Confidence 1222 55799999999999999975 577889999999999999998899999999999999999999999999
Q ss_pred cccCCccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC-----CcccccCCCCCCCCCCChHHHHHHHHhhC-
Q 015697 301 GLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSG-----KVVPGFGHGVLRKTDPRYTCQREFALKHL- 374 (402)
Q Consensus 301 aL~GplHGgAne~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g-----~~IpGfGH~Vyr~~DPRa~~l~~~a~~~~- 374 (402)
+|+||+||||||+|++||.++.+..+++.+++++++||++.++++ ++||||||||||..|||+++|+++++++.
T Consensus 238 al~GplHGGA~e~v~~~l~~i~~~~~~~~~~~~v~~~v~~~l~~~~~~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~l~~ 317 (406)
T cd06113 238 SLKGPRHGGANIKVMEMLEDIKENVKDWTDEDEVRAYLRKILNKEAFDKSGLIYGMGHAVYTLSDPRAVVLKKYARSLAK 317 (406)
T ss_pred HccCccccChHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhccccccCceeecCCCCCCCCCCccHHHHHHHHHHHHH
Confidence 999999999999999999999766666667899999999999876 59999999999999999999999999874
Q ss_pred --CCChHHHHHHHHHHHHHHHHHhc-CCCCC
Q 015697 375 --PDDPLFQLVSKLFEVVPPILTKL-GKVSN 402 (402)
Q Consensus 375 --~~d~~~~la~~le~~~~~~l~~~-~k~~n 402 (402)
+.+++++++.++|+++++++.+. +|.||
T Consensus 318 ~~~~~~~~~~~~~ie~~~~~~~~~~~~~~r~ 348 (406)
T cd06113 318 EKGREEEFALYERIERLAPEVIAEERGIGKT 348 (406)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 45779999999999999988765 55553
No 23
>PRK14034 citrate synthase; Provisional
Probab=100.00 E-value=1.2e-75 Score=591.42 Aligned_cols=291 Identities=26% Similarity=0.414 Sum_probs=267.1
Q ss_pred cccccccccceeecceecCCCCceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCC
Q 015697 76 IGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (402)
Q Consensus 76 ~~Glrgv~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp 155 (402)
..||+||.+.+|.||+||++ +++||||+|+||+++. +||||+||||+|+|||++|+++|+++|..++.+|
T Consensus 4 ~~GL~gv~~~~s~is~i~~~-~L~YRGy~i~dLa~~~---------~fEeva~LLl~G~lPt~~el~~f~~~L~~~~~lp 73 (372)
T PRK14034 4 TRGLEGVVATTSSVSSIIDD-TLTYVGYNIDDLAENA---------SFEEVVYLLWHRKLPNKQELAEFKEQLSENAKVP 73 (372)
T ss_pred CCCCCCceEeeeEeeccCCC-eEEECCccHHHHhccC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 46999999999999999964 6999999999999874 6999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC-CCChHHHHHHHHHHhhccchhhHHhhhccCCCCCCCchHHHHHHHHHhhhHHHHHHHHHHhcCCccc
Q 015697 156 DYVYKAIDALPV-TAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKII 234 (402)
Q Consensus 156 ~~v~~~i~~lP~-~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~~~~ 234 (402)
+.+.++++.||+ +.|||++|+++|++|+.++++.. +..++..++++++|||++|+|+|++||+..+ .+++
T Consensus 74 ~~v~~~l~~~p~~~~hpm~~l~~~vs~l~~~~~~~~--------~~~~~~~~~~a~~liA~~p~i~a~~~r~~~g-~~~~ 144 (372)
T PRK14034 74 GEIIEHLKQYDLKKVHPMSVLRTAISMLGLYDEEAE--------IMDEEANYRKAVRLQAKVPTIVAAFSRIRKG-LDPV 144 (372)
T ss_pred HHHHHHHHhCCCcCcCHHHHHHHHHHhhcccCcccc--------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCC
Confidence 999999999997 59999999999999998765531 1124677899999999999999999887654 4588
Q ss_pred CCCCCCCHHHHHHHhhCC--CChHHHHHHHHHHHHhccCCCCCChhHHHHHHhccCCChHHHHHHHhhcccCCccccchH
Q 015697 235 PKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQ 312 (402)
Q Consensus 235 ~p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~Lil~aDHeg~n~St~aarvvaSt~sd~y~avaAgi~aL~GplHGgAne 312 (402)
+|++++||++||++||++ |++.++++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+|||||+
T Consensus 145 ~p~~~ls~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~aDHg-~n~ST~aaRv~aSt~~d~ysav~agi~al~GplHGGA~e 223 (372)
T PRK14034 145 EPRKDLSLAANFLYMLNGEEPDEVEVEAFNKALVLHADHE-LNASTFTARVCVATLSDVYSGITAAIGALKGPLHGGANE 223 (372)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCC-CCccHHHHHHHhccCCcHHHHHHHHhcccCCCccCCHHH
Confidence 999999999999999986 78889999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCChHHHHHHHHhhC---CCChHHHHHHHHHHH
Q 015697 313 EVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEV 389 (402)
Q Consensus 313 ~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vyr~~DPRa~~l~~~a~~~~---~~d~~~~la~~le~~ 389 (402)
+|++||+++ + +.+++++||++.+++|++||||||||||..|||+++|+++++++. +++++++++++++++
T Consensus 224 ~~~~~l~~i----~---~~~~~~~~v~~~~~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~~~~~~~~~~~~~~a~~~e~~ 296 (372)
T PRK14034 224 NVMKMLTEI----G---EEENVESYIHNKLQNKEKIMGFGHRVYRQGDPRAKHLREMSKRLTVLLGEEKWYNMSIKIEEI 296 (372)
T ss_pred HHHHHHHHh----C---CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 999999886 5 468999999999999999999999999999999999999999874 567999999999998
Q ss_pred HHHH
Q 015697 390 VPPI 393 (402)
Q Consensus 390 ~~~~ 393 (402)
+.+.
T Consensus 297 ~~~~ 300 (372)
T PRK14034 297 VTKE 300 (372)
T ss_pred HHHc
Confidence 8553
No 24
>PRK14037 citrate synthase; Provisional
Probab=100.00 E-value=6.5e-75 Score=587.29 Aligned_cols=293 Identities=25% Similarity=0.386 Sum_probs=266.4
Q ss_pred ccccccccccceeecceecCCCCc-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC
Q 015697 75 VIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 153 (402)
Q Consensus 75 ~~~Glrgv~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~ 153 (402)
+..||+||++.+|+||+||+++|+ +||||+|+||+++. +||||+||||+|+|||++|++.|+++|..++.
T Consensus 4 ~~~GL~gv~~~~t~is~id~~~g~L~yRGy~i~dL~~~~---------~Feev~~LLl~G~lP~~~e~~~f~~~L~~~~~ 74 (377)
T PRK14037 4 ISKGLENVIIKVTNLTFIDGEKGILRYRGYNIEDLVNYG---------SYEETIYLMLYGELPTKKELNDLKEKLNEEYE 74 (377)
T ss_pred CCCCCCCCeeeeeeceEEeCCCCEEEECCccHHHHHccC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 457999999999999999999995 99999999999985 69999999999999999999999999999999
Q ss_pred CCHHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccCCCCCC-CchHHHHHHHHHhhhHHHHHHHHHHhcCCc
Q 015697 154 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYW-EPTYEDSLNLIARVPVVAAYVYQRIYKDGK 232 (402)
Q Consensus 154 lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~~~~-~~~~e~a~~LiAklp~iaa~iyr~~~~~~~ 232 (402)
+|+.+.+++++||++.|||++|+++|++|+++++- .+| +..++++++|||++|+|+|++||++.+. .
T Consensus 75 lp~~v~~~~~~~p~~~hpm~~l~~~vs~l~~~~~~-----------~~~~~~~~~~a~~liA~~p~i~a~~yr~~~g~-~ 142 (377)
T PRK14037 75 VPQEVIDSIYLMPRDSDAIGLMEAAFAALASIDKN-----------FKWKENDKEKAISIIAKMATIVANVYRRKEGN-K 142 (377)
T ss_pred CCHHHHHHHHhCCccCCcHHHHHHHHHhhhccCCc-----------ccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC-C
Confidence 99999999999999999999999999999975321 123 3457899999999999999999998653 4
Q ss_pred ccCCCCCCCHHHHHHHhhCC--CChHHHHHHHHHHHHhccCCCCCChhHHHHHHhccCCChHHHHHHHhhcccCCccccc
Q 015697 233 IIPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLA 310 (402)
Q Consensus 233 ~~~p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~Lil~aDHeg~n~St~aarvvaSt~sd~y~avaAgi~aL~GplHGgA 310 (402)
++.|++++||++||++||.+ |++.++++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||
T Consensus 143 ~~~p~~~~s~a~nfl~ml~G~~p~~~~~~~l~~~Lil~ADHg-~naST~aarv~aSt~ad~ysav~agi~al~GplHGGA 221 (377)
T PRK14037 143 PRIPEPSDSFAESFLLASFAREPTAEEIKAMDAALILYTDHE-VPASTTAALVAASTLSDMYSCITAALAALKGPLHGGA 221 (377)
T ss_pred CCCCCCCCCHHHHHHHHHhccCCcHHHHHHHHHHHhHhcccC-CchHhHHHHHhhccCCCHHHHHHHHHHhccCcccCCh
Confidence 78899999999999999976 88999999999999999999 8999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hCCCcccccCCCCCCCCCCChHHHHHHHHhhC---C-CChHHHHHHH
Q 015697 311 NQEVLLWIKSVVDECGENVTTEQLKDYVWKTL-NSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---P-DDPLFQLVSK 385 (402)
Q Consensus 311 ne~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l-~~g~~IpGfGH~Vyr~~DPRa~~l~~~a~~~~---~-~d~~~~la~~ 385 (402)
||+|++||+++ + +++++++|+++.+ ++|++||||||||||..|||+++|+++++++. + .+++++++.+
T Consensus 222 ~e~v~~~l~ei----~---~~~~~~~~~~~~~~~~~~~i~GFGHrvyk~~DPRa~~L~~~~~~~~~~~~~~~~~~~ia~~ 294 (377)
T PRK14037 222 AEEAFKQFVEI----G---DPNNVEMWFNDKIINGKKRLMGFGHRVYKTYDPRAKIFKELAETLIERNSEAKKYFEIAQK 294 (377)
T ss_pred HHHHHHHHHHh----c---ChhhHHHHHHHHHhcCCCeecCCCCCCCCCCCccHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 99999999886 5 4689999998765 55589999999999999999999999999974 3 4789999999
Q ss_pred HHHHHHHHHHh
Q 015697 386 LFEVVPPILTK 396 (402)
Q Consensus 386 le~~~~~~l~~ 396 (402)
+|+++.+.+..
T Consensus 295 ~e~~~~~~~~~ 305 (377)
T PRK14037 295 LEELGIKQFGS 305 (377)
T ss_pred HHHHHHHHhhc
Confidence 99988766543
No 25
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some typ
Probab=100.00 E-value=9.5e-75 Score=590.05 Aligned_cols=293 Identities=28% Similarity=0.426 Sum_probs=266.7
Q ss_pred ccccccccccceeecceecCCCCc-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC
Q 015697 75 VIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 153 (402)
Q Consensus 75 ~~~Glrgv~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~ 153 (402)
+..||+||++++|+||+||+++|+ +||||+|+||+++. +||||+||||+|+|||++|+++|+.+|..++.
T Consensus 27 ~~~GL~gv~v~~S~Is~idg~~G~L~YRGy~i~dLa~~~---------sfEEva~LL~~G~lP~~~el~~f~~~L~~~~~ 97 (400)
T cd06114 27 YDPGFMNTASCESAITYIDGEKGILRYRGYPIEQLAEKS---------SFLEVCYLLLYGELPTAEQLQEFREEITRHTL 97 (400)
T ss_pred CCCCCCCceeEeeeCeEEeCCCCEEEECCccHHHHHhcC---------CHHHHHHHHHcCcCCCHHHHHHHHHHHHHccC
Confidence 346999999999999999999996 99999999999985 69999999999999999999999999999999
Q ss_pred CCHHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccCCCCCCCchHHHHHHHHHhhhHHHHHHHHHHhcCCcc
Q 015697 154 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI 233 (402)
Q Consensus 154 lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~~~ 233 (402)
+|+.+.++++.+|++.|||++|+++|++|+.+++. ... ...|+...+++++|||++|+|+|++||++.+. ++
T Consensus 98 lp~~v~~~i~~~p~~~~pm~~l~~~vs~l~~~d~~------~~~-~~~~~~~~~~a~~lia~~p~i~a~~~r~~~g~-~~ 169 (400)
T cd06114 98 VHEQMKRFFNGFPRDAHPMAILSAMVNALSAFYPD------SLD-VNDPEQRELAAIRLIAKVPTIAAMAYRYSIGQ-PF 169 (400)
T ss_pred CCHHHHHHHHhcccCCCHHHHHHHHHHHHhhcCcc------ccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC
Confidence 99999999999999999999999999999975432 111 13478888999999999999999999988653 47
Q ss_pred cCCCCCCCHHHHHHHhhCC-------CChHHHHHHHHHHHHhccCCCCCChhHHHHHHhccCCChHHHHHHHhhcccCCc
Q 015697 234 IPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPL 306 (402)
Q Consensus 234 ~~p~~~l~~~~nf~~ml~~-------~~~~~~~~l~~~Lil~aDHeg~n~St~aarvvaSt~sd~y~avaAgi~aL~Gpl 306 (402)
++|++++||++||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+
T Consensus 170 ~~p~~~ls~a~nfl~ml~g~~~~~~~p~~~~~~~l~~~LvL~aDH~-~n~STfaaRv~aSt~adl~sav~agl~al~Gpl 248 (400)
T cd06114 170 IYPDNDLSYVENFLHMMFAVPYEPYEVDPVVVKALDTILILHADHE-QNASTSTVRMVGSSGANLFASISAGIAALWGPL 248 (400)
T ss_pred CCCCCCcCHHHHHHHHhcCCCCccCCCCHHHHHHHHHHHeeeccCC-CcchHHHHHHHhccCCcHHHHHHHHHHhccCCc
Confidence 8999999999999999974 46889999999999999998 999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC--CcccccCCCCCCCCCCChHHHHHHHHhh---C-CCChHH
Q 015697 307 HGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSG--KVVPGFGHGVLRKTDPRYTCQREFALKH---L-PDDPLF 380 (402)
Q Consensus 307 HGgAne~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g--~~IpGfGH~Vyr~~DPRa~~l~~~a~~~---~-~~d~~~ 380 (402)
|||||+.|++||.++ + +.+++++||++.+++| ++||||||||||..|||+++|+++++++ . .+++++
T Consensus 249 HGGA~~~v~~~l~~i----~---~~~~~~~~v~~~l~~~~~~~ipGfGH~vyk~~DPRa~~L~~~~~~l~~~~~~~~~~~ 321 (400)
T cd06114 249 HGGANEAVLEMLEEI----G---SVGNVDKYIAKAKDKNDPFRLMGFGHRVYKNYDPRAKILKKTCDEVLAELGKDDPLL 321 (400)
T ss_pred ccChHHHHHHHHHHh----c---CcccHHHHHHHHHhcCCCccccCCCCCCCCCCCccHHHHHHHHHHHHHHhCCCcHHH
Confidence 999999999999887 4 3579999999999987 5999999999999999999999999875 2 357899
Q ss_pred HHHHHHHHHHHH
Q 015697 381 QLVSKLFEVVPP 392 (402)
Q Consensus 381 ~la~~le~~~~~ 392 (402)
++++++|+++.+
T Consensus 322 ~~~~~ie~~~~~ 333 (400)
T cd06114 322 EIAMELEEIALK 333 (400)
T ss_pred HHHHHHHHHHHH
Confidence 999999997755
No 26
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site []. The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH []. This entry represents types I and II citrate synthase enzymes, as well as the related enzymes 2-methylcitrate synthase and ATP citrate synthase. 2-methylcitrate (2.3.3.5 from EC) synthase catalyses the conversion of oxaloacetate and propanoyl-CoA into (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate and coenzyme A. This enzyme is induced during bacterial growth on propionate, while type II hexameric citrate synthase is constitutive []. ATP citrate synthase (2.3.3.8 from EC) (also known as ATP citrate lyase) catalyses the MgATP-dependent, CoA-dependent cleavage of citrate into oxaloacetate and acetyl-CoA, a key step in the reductive tricarboxylic acid pathway of CO2 assimilation used by a variety of autotrophic bacteria and archaea to fix carbon dioxide []. ATP citrate synthase is composed of two distinct subunits. In eukaryotes, ATP citrate synthase is a homotetramer of a single large polypeptide, and is used to produce cytosolic acetyl-CoA from mitochondrial produced citrate [].; GO: 0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, 0044262 cellular carbohydrate metabolic process; PDB: 2C6X_D 3L96_B 1OWB_B 1NXG_A 1K3P_A 1OWC_B 3L97_B 1NXE_A 3L98_A 3L99_A ....
Probab=100.00 E-value=5.6e-75 Score=585.30 Aligned_cols=296 Identities=33% Similarity=0.529 Sum_probs=260.4
Q ss_pred cccccccceeecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCH
Q 015697 78 GMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPD 156 (402)
Q Consensus 78 Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp~ 156 (402)
||+|+++++|+||+||+++| ++||||+|.||+++. +||||+||||+|+|||++|++.|+++|.+++.+|+
T Consensus 1 Gl~gv~v~~T~Is~id~~~G~L~YRGy~i~dL~~~~---------sfeeva~LL~~g~lP~~~el~~f~~~l~~~~~lpe 71 (356)
T PF00285_consen 1 GLRGVPVCETSISFIDGEKGILRYRGYDIEDLAENA---------SFEEVAYLLWYGELPTAEELEEFSAELKERRALPE 71 (356)
T ss_dssp GGTTEEEEEESSEEEETTTTEEEETTEEHHHHHHHS---------BHHHHHHHHHHSS--BHHHHHHHHHHHHCTTS--H
T ss_pred CCCCCeEeeeeCeEEeCCCCEEEEcCeEHHHHHhcC---------CHHHHHHHHHhccCCChhhhccchhHHHhhcchhH
Confidence 89999999999999999999 799999999999974 69999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccCCCCCCCchHHHHHHHHHhhhHHHHHHHHHHhcCCcccCC
Q 015697 157 YVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPK 236 (402)
Q Consensus 157 ~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~~~~~p 236 (402)
.|.+++.+||+++|||++|+++|++|+..+++ .....+|+..++++++|||++|+|+|++|++..+ .++++|
T Consensus 72 ~v~~~i~~lp~~~~pm~~L~~~vs~l~~~~~~-------~~~~~~~~~~~~~~~~liA~~p~i~a~~~~~~~g-~~~~~p 143 (356)
T PF00285_consen 72 EVIEVIEALPRDAHPMDVLRAAVSALSAFDPD-------PLYDNSPEDVLEDAIRLIAKIPTIVAAIYRHRRG-QPPIPP 143 (356)
T ss_dssp HHHHHHHCSTTTS-HHHHHHHHHHHHHHHSTT-------GTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S-----
T ss_pred HHHHHHhhcCCCCCchHHHHHHHhhhhhhhhc-------cccccchhHHHHHHHHHhhcchHHHHHHHHHhCC-CCcccc
Confidence 99999999999999999999999999987655 1234568999999999999999999999999854 358889
Q ss_pred CCCCCHHHHHHHhhC--C--CChHHHHHHHHHHHHhccCCCCCChhHHHHHHhccCCChHHHHHHHhhcccCCccccchH
Q 015697 237 DDSLDYGGNFSHMLG--F--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQ 312 (402)
Q Consensus 237 ~~~l~~~~nf~~ml~--~--~~~~~~~~l~~~Lil~aDHeg~n~St~aarvvaSt~sd~y~avaAgi~aL~GplHGgAne 312 (402)
+++++|++||++||+ + +++.++++||++||+||||| +|||||++|+++||++|+|+|++||+++|+||+||||++
T Consensus 144 ~~~~~~~~n~l~~l~~~g~~p~~~~~~~l~~~lvl~aDH~-~~~St~aaR~~aSt~~~~~~av~agl~al~G~~hgga~~ 222 (356)
T PF00285_consen 144 DPDLSYAENFLYMLGVTGREPDPEEARALDAALVLHADHG-LNPSTFAARVAASTGADLYSAVAAGLAALSGPLHGGANE 222 (356)
T ss_dssp -TTSSHHHHHHHHHH-HSSB--HHHHHHHHHHHHHHS--S-SSHHHHHHHHHHTTT--HHHHHHHHHHHHCSTTTTTHHH
T ss_pred ccchHHHHHHHHHhhccccCCChHHHHHHHHHHHhhcCCC-CCccchhhhhhhccCcchhHHHHhhhhhccCcccccccH
Confidence 999999999999993 3 68999999999999999997 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCChHHHHHHHHhhC---CCChHHHHHHHHHHH
Q 015697 313 EVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEV 389 (402)
Q Consensus 313 ~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vyr~~DPRa~~l~~~a~~~~---~~d~~~~la~~le~~ 389 (402)
+|++||.++ + +.+++++||++.+++|++||||||||||..|||+++|+++++++. ..+++++++.++|++
T Consensus 223 ~~~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GfGH~vy~~~DPRa~~l~~~~~~~~~~~~~~~~~~~~~~ie~~ 295 (356)
T PF00285_consen 223 AAMRMLQEI----G---SPENVEEYVEERLAKGERIPGFGHRVYKNGDPRAEALLALARELGEEFPDGPLVELAEAIEEA 295 (356)
T ss_dssp HHHHHHHHH----S---SGGGHHHHHHHHHHTTSTTTTBCESSSSS--HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----H---hhHHHHHHHHHHHhccccccccCCCcCCCCCCChHHHHHHHHHhhhccCCCHHHHHHHHHHHH
Confidence 999999987 4 579999999999999999999999999999999999999999987 789999999999999
Q ss_pred HHHHHHhcC
Q 015697 390 VPPILTKLG 398 (402)
Q Consensus 390 ~~~~l~~~~ 398 (402)
+.+++.+++
T Consensus 296 ~~~~~~~~~ 304 (356)
T PF00285_consen 296 APEDFKERK 304 (356)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHhhcc
Confidence 999887763
No 27
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. DsCS, compared with CS from the hyperthermophile Pyrococcus furiosus (not included in this group), has an increase in the size of surface loops, a higher proline content in the loop regions, a more accessible active site, and a highe
Probab=100.00 E-value=9.4e-73 Score=569.39 Aligned_cols=292 Identities=23% Similarity=0.357 Sum_probs=269.6
Q ss_pred ccccccccceeecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCC
Q 015697 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (402)
Q Consensus 77 ~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp 155 (402)
.||+||++.+|+||++|+++| ++||||+|+||+++. +||||+||||+|++|+++|++.|+.+|.+++.+|
T Consensus 1 ~Gl~gv~~~~s~Is~i~~~~g~L~yRG~di~dLa~~~---------~feeva~LL~~G~lP~~~e~~~f~~~l~~~~~lp 71 (362)
T cd06111 1 KGLAGVVADTTAISKVMPETNSLTYRGYPVQDLAENC---------SFEEVAYLLWNGELPNAAQLAEFSQRERSYRRLD 71 (362)
T ss_pred CCCCCceEecccceEEECCCCeEEECCccHHHHHccC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCCC
Confidence 499999999999999999987 699999999999986 6999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccCCCCCCCchHHHHHHHHHhhhHHHHHHHHHHhcCCcccC
Q 015697 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 235 (402)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~~~~~ 235 (402)
+.+.++++.||++.|||++|+++|++|+.++++. .+..|+...+++++|||++|+|+|++||+..+. .+++
T Consensus 72 ~~~~~~~~~~p~~~~pm~~l~~~vs~l~~~d~~~--------~~~~~~~~~~~a~~lia~~~~i~a~~~~~~~g~-~~~~ 142 (362)
T cd06111 72 RNLLSLIASLPKNCHPMDVLRTAVSVLGAEDSET--------DDSSPDANLAKAIRLLAQLPTVVAADIRRRKGL-DPIP 142 (362)
T ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHhhccCccc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCcC
Confidence 9999999999999999999999999999877653 123578889999999999999999999987553 5888
Q ss_pred CCCCCCHHHHHHHhhCC--CChHHHHHHHHHHHHhccCCCCCChhHHHHHHhccCCChHHHHHHHhhcccCCccccchHH
Q 015697 236 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 313 (402)
Q Consensus 236 p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~Lil~aDHeg~n~St~aarvvaSt~sd~y~avaAgi~aL~GplHGgAne~ 313 (402)
|+++++|++||++|+++ |++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+|||||+.
T Consensus 143 p~~~ls~a~nfl~m~~g~~p~~~~~~~l~~~Lvl~ADHg-~n~St~aaR~~aSt~ad~~~av~agl~aL~GplHGGA~~~ 221 (362)
T cd06111 143 PDSDLGIAENFLHMCFGEVPSPEVVRAFDVSLILYAEHS-FNASTFTARVITSTLSDIYSAITGAIGALKGPLHGGANEA 221 (362)
T ss_pred CCCCcCHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhccC-CchhHHHHHHHHccCCCHHHHHHHHHhhccCccccchHHH
Confidence 99999999999999965 68889999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCChHHHHHHHHhhC---CCChHHHHHHHHHHHH
Q 015697 314 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVV 390 (402)
Q Consensus 314 v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vyr~~DPRa~~l~~~a~~~~---~~d~~~~la~~le~~~ 390 (402)
|++||.++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. +.+++++++.++++++
T Consensus 222 ~~~~l~ei----~---~~~~~~~~v~~~~~~~~~l~GFGH~vyk~~DPRa~~L~~~l~~l~~~~~~~~~~~~~~~i~~~~ 294 (362)
T cd06111 222 VMHMMLEI----D---DPEKAAQWMLDALARKEKVMGFGHRVYKSGDSRVPTMEKALRRVAAVHDGQKWLAMYDALEDAM 294 (362)
T ss_pred HHHHHHHh----C---ChhhHHHHHHHHHhcCCceecCCCCCCCCCCchHHHHHHHHHHHHhhcCccHHHHHHHHHHHHH
Confidence 99999886 5 468999999999999999999999999999999999999988763 3568999999999988
Q ss_pred HHHH
Q 015697 391 PPIL 394 (402)
Q Consensus 391 ~~~l 394 (402)
.+..
T Consensus 295 ~~~~ 298 (362)
T cd06111 295 VAAK 298 (362)
T ss_pred HHhc
Confidence 7653
No 28
>PRK12349 citrate synthase 3; Provisional
Probab=100.00 E-value=1.8e-72 Score=568.58 Aligned_cols=293 Identities=27% Similarity=0.378 Sum_probs=267.2
Q ss_pred cccccccccceeecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCC
Q 015697 76 IGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 154 (402)
Q Consensus 76 ~~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~l 154 (402)
..||+|+.+++|+||+||+++| ++||||+|+||+++. +||||+||||+|+|||++|++.|+++|..++.+
T Consensus 6 ~~Gl~g~~~~~S~IS~id~~~g~L~YRGydi~dLa~~~---------sFeeva~LL~~G~LP~~~e~~~f~~~L~~~~~~ 76 (369)
T PRK12349 6 SPGLDGVIAAETKISFLDTVKGEIVIQGYDLIELSKTK---------EYLDIVHLLLEEHLPNEDEKATLEKKLKEEYAV 76 (369)
T ss_pred CCccCCCeeeeeeceeEeCCCCEEEECCccHHHHHccC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCC
Confidence 3699999999999999999888 699999999999985 699999999999999999999999999999999
Q ss_pred CHHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccCCCCCCCchHHHHHHHHHhhhHHHHHHHHHHhcCCccc
Q 015697 155 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKII 234 (402)
Q Consensus 155 p~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~~~~ 234 (402)
|+.|.++++.+|++.|||++|+++|++|+.++++. + +..++...+++++|||++|+|+|++||+..+ .+++
T Consensus 77 p~~v~~~l~~~p~~~~pm~~l~~~vs~l~~~d~~~--~------~~~~~~~~~~a~~lia~~p~i~a~~~r~~~g-~~~~ 147 (369)
T PRK12349 77 PEGVFNILKALPKETHPMDGLRTGVSALAGYDNDI--E------DRSLEVNKSRAYKLLSKVPNIVANSYHILNN-EEPI 147 (369)
T ss_pred CHHHHHHHHhCCCCCCHHHHHHHHHHHhcccCccc--c------ccCcHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCC
Confidence 99999999999999999999999999999877553 1 2235677889999999999999999998754 4588
Q ss_pred CCCCCCCHHHHHHHhhCC--CChHHHHHHHHHHHHhccCCCCCChhHHHHHHhccCCChHHHHHHHhhcccCCccccchH
Q 015697 235 PKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQ 312 (402)
Q Consensus 235 ~p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~Lil~aDHeg~n~St~aarvvaSt~sd~y~avaAgi~aL~GplHGgAne 312 (402)
.|+++++|++||++||++ |++..+++||.+|||||||| +|+||||+|+++||++|+|+||+|||++|+||+||||||
T Consensus 148 ~p~~~l~~a~nfl~ml~g~~p~~~~~~~~~~~Lvl~ADH~-lnaStfa~Rv~aSt~ad~~~av~agl~al~GplHGGA~e 226 (369)
T PRK12349 148 EPLKELSYSANFLYMLTGKKPTELEEKIFDRSLVLYSEHE-MPNSTFTARVIASTQSDLYGALTGAVASLKGSLHGGANE 226 (369)
T ss_pred CCCcCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCcC-ccHHHHHHHHHHccCccHHHHHHHHHHhccCccccChHH
Confidence 999999999999999976 68889999999999999998 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCC-CCCCCChHHHHHHHHhhC---CCChHHHHHHHHHH
Q 015697 313 EVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVL-RKTDPRYTCQREFALKHL---PDDPLFQLVSKLFE 388 (402)
Q Consensus 313 ~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vy-r~~DPRa~~l~~~a~~~~---~~d~~~~la~~le~ 388 (402)
.|++||.++ + +++++++||++.+++|++||||||||| +..|||+++|++.++++. +..+++++++.+++
T Consensus 227 ~~~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GFGH~vy~~~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~~~e~ 299 (369)
T PRK12349 227 AVMYMLLEA----G---TVEKFEELLQKKLYNKEKIMGFGHRVYMKKMDPRALMMKEALKQLCDVKGDYTLYEMCEAGEK 299 (369)
T ss_pred HHHHHHHHc----C---CHHHHHHHHHHHHhcCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 999999886 4 468999999999999999999999999 668999999999998763 34578898888888
Q ss_pred HHHHHH
Q 015697 389 VVPPIL 394 (402)
Q Consensus 389 ~~~~~l 394 (402)
++.+..
T Consensus 300 ~~~~~~ 305 (369)
T PRK12349 300 IMEKEK 305 (369)
T ss_pred HHHHhc
Confidence 886653
No 29
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=100.00 E-value=4.8e-72 Score=564.27 Aligned_cols=293 Identities=38% Similarity=0.599 Sum_probs=273.3
Q ss_pred ccccccccceeecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCC
Q 015697 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (402)
Q Consensus 77 ~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp 155 (402)
.||+|+++++|+||+||+++| ++||||+|+||+++. +||||+||||+|+||+++|++.|+.+|..++.+|
T Consensus 1 ~Gl~g~~v~~s~is~id~~~g~l~YRG~~i~dL~~~~---------~feeva~LL~~G~lP~~~el~~f~~~L~~~~~~p 71 (358)
T cd06118 1 PGLEGVKAKETSISYIDGDEGILRYRGYDIEELAEKS---------SFEEVAYLLLYGKLPTKEELAEFKKKLASHRALP 71 (358)
T ss_pred CCCCCceeeeeeeeEEeCCCCeEEECCccHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCC
Confidence 499999999999999999987 699999999999985 6999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccCCCCCCCchHHHHHHHHHhhhHHHHHHHHHHhcCCcccC
Q 015697 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 235 (402)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~~~~~ 235 (402)
+.+.++++.+|++.|||++|+++|++++.++++. .+.+|+...+++++|||++|+|++++|++..+ ..++.
T Consensus 72 ~~v~~~~~~~p~~~~pm~~l~~~~~~l~~~~~~~--------~~~~~~~~~~~a~~lia~~~~i~a~~~~~~~g-~~~~~ 142 (358)
T cd06118 72 EHVVEILDLLPKNAHPMDVLRTAVSALGSFDPFA--------RDKSPEARYEKAIRLIAKLPTIAANIYRNREG-LEIIA 142 (358)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHhhhccCCcc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCC
Confidence 9999999999999999999999999999877653 13458888999999999999999999998754 34788
Q ss_pred CCCCCCHHHHHHHhhCC--CChHHHHHHHHHHHHhccCCCCCChhHHHHHHhccCCChHHHHHHHhhcccCCccccchHH
Q 015697 236 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 313 (402)
Q Consensus 236 p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~Lil~aDHeg~n~St~aarvvaSt~sd~y~avaAgi~aL~GplHGgAne~ 313 (402)
|+++++|++||++|+++ +++..+++||.+||+||||| +|+||||+|+++||++|+|+|++||+++|+||+||||++.
T Consensus 143 p~~~~~~~~~~~~~~~g~~p~~~~~~~l~~~Lvl~aDH~-~n~Stfa~R~~aSt~ad~~~av~agl~al~GplHGGA~~~ 221 (358)
T cd06118 143 PDPDLSYAENFLYMLFGEEPDPEEAKAMDLALILHADHE-GNASTFTARVVASTLSDMYSAIAAAIAALKGPLHGGANEA 221 (358)
T ss_pred CCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCCC-CChHHHHHHHHHccCCCHHHHHHHHHHHccCccccChHHH
Confidence 99999999999999988 89999999999999999999 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCChHHHHHHHHhhCC---CChHHHHHHHHHHHH
Q 015697 314 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLP---DDPLFQLVSKLFEVV 390 (402)
Q Consensus 314 v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vyr~~DPRa~~l~~~a~~~~~---~d~~~~la~~le~~~ 390 (402)
|++||.++ + +++++++||++.+++|++||||||||||..|||+++|+++++++.. .+++++++.++++++
T Consensus 222 ~~~~l~~~----~---~~~~~~~~i~~~l~~~~~i~GfGH~vyk~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~~e~~~ 294 (358)
T cd06118 222 VLKMLLEI----G---TPENVEAYIWKKLANKRRIMGFGHRVYKTYDPRAKILKELAEELAEEKGDDKLFEIAEELEEIA 294 (358)
T ss_pred HHHHHHHh----C---CchHHHHHHHHHHhcCCeecCCCCCCCCCCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 99999987 4 3478999999999999999999999999999999999999999854 589999999999999
Q ss_pred HHHHH
Q 015697 391 PPILT 395 (402)
Q Consensus 391 ~~~l~ 395 (402)
.+...
T Consensus 295 ~~~~~ 299 (358)
T cd06118 295 LEVLG 299 (358)
T ss_pred HHhhc
Confidence 88863
No 30
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II. Members of this family are dimeric enzymes with activity as 2-methylcitrate synthase, citrate synthase, or both. Many Gram-negative species have a hexameric citrate synthase, termed citrate synthase I (TIGR01798). Members of this family (TIGR01800) appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesize 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme.
Probab=100.00 E-value=1.2e-71 Score=562.70 Aligned_cols=293 Identities=28% Similarity=0.441 Sum_probs=270.3
Q ss_pred ccccccccceeecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCC
Q 015697 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (402)
Q Consensus 77 ~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp 155 (402)
.||+|+++++|+||++|+++| ++||||+|.||+++. +||||+||||+|++|+++|++.|.++|..++.+|
T Consensus 1 ~Gl~g~~~~~t~Is~id~~~g~l~yRG~~i~dL~~~~---------~feeva~LL~~G~lP~~~e~~~f~~~l~~~~~~p 71 (368)
T TIGR01800 1 KGLEGVIADETALSTIDGSEGILTYRGYDIEDLAEHA---------SFEEVAYLLLHGKLPTRSELRKFKTELAKLRGLP 71 (368)
T ss_pred CCCCCCeeeeeeceEEECCcceEEECCeeHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcCCC
Confidence 499999999999999999999 699999999999985 6999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccCCCCCCCchHHHHHHHHHhhhHHHHHHHHHHhcCCcccC
Q 015697 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 235 (402)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~~~~~ 235 (402)
+.+.++++.||++.|||++|+++|++|+.++++. + +..++...+++++|||++|+|+|++||+..+ .+++.
T Consensus 72 ~~~~~~~~~~p~~~~pm~~l~~~ls~l~~~d~~~--~------~~~~~~~~~~a~~lia~~p~i~a~~~~~~~g-~~~~~ 142 (368)
T TIGR01800 72 DEVIELIEALPAESHPMDALRTAVSYLGALDPEA--F------GHTPEEARDIAIRLIAKLPTIVAYWYRIRNG-LEIVA 142 (368)
T ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHhhccCccc--c------cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcC
Confidence 9999999999999999999999999999876553 1 1234677889999999999999999998754 45789
Q ss_pred CCCCCCHHHHHHHhhCC--CChHHHHHHHHHHHHhccCCCCCChhHHHHHHhccCCChHHHHHHHhhcccCCccccchHH
Q 015697 236 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 313 (402)
Q Consensus 236 p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~Lil~aDHeg~n~St~aarvvaSt~sd~y~avaAgi~aL~GplHGgAne~ 313 (402)
|+++++|++||++|+++ +++..+++||.+|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||++.
T Consensus 143 p~~~~~~~~n~l~ml~g~~p~~~~~~~l~~~Lvl~ADHg-~n~St~aaRv~aSt~adl~~av~agl~al~Gp~HGGA~~~ 221 (368)
T TIGR01800 143 PKEDDSHAANFLYMLHGEEPSKEEEKAMDIALILYAEHE-FNASTFAARVAASTLSDMYSAITAAIGALKGPLHGGANEA 221 (368)
T ss_pred CCCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCC-CchHHHHHHHHhccCCCHHHHHHHHHhhcCCccccCHHHH
Confidence 99999999999999986 68889999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCChHHHHHHHHhhC---CCChHHHHHHHHHHHH
Q 015697 314 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVV 390 (402)
Q Consensus 314 v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vyr~~DPRa~~l~~~a~~~~---~~d~~~~la~~le~~~ 390 (402)
|++||.++ + +.+++++||++.+++|++||||||||||..|||+++|+++++++. +++++++++.++++++
T Consensus 222 ~~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GfGH~vy~~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~ 294 (368)
T TIGR01800 222 VMAMLDEI----G---DPDKAEAWIRKALENKERIMGFGHRVYKTYDPRAKILKEYAKKLSAKEGDSKWYEIAERLEDVM 294 (368)
T ss_pred HHHHHHHh----c---ChHHHHHHHHHHHHCCCccCCCCCCCCCCCCchHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 99999886 4 457899999999999999999999999999999999999999973 5689999999999998
Q ss_pred HHHHH
Q 015697 391 PPILT 395 (402)
Q Consensus 391 ~~~l~ 395 (402)
.+..+
T Consensus 295 ~~~~~ 299 (368)
T TIGR01800 295 EKEKG 299 (368)
T ss_pred HHhcC
Confidence 87533
No 31
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-II, the major CS of the gram-positive bacterium Bacillus subtilis. A mutation in the gene which encodes BsCS-II (citZ gene) has been described which resulted in a significant loss of CS activity, partial glutamate auxotrophy, and a sporulation deficiency, a
Probab=100.00 E-value=3.3e-71 Score=557.69 Aligned_cols=291 Identities=27% Similarity=0.417 Sum_probs=269.7
Q ss_pred ccccccccceeecceecCCCCc-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCC
Q 015697 77 GGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (402)
Q Consensus 77 ~Glrgv~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp 155 (402)
.||+|+++++|+||++|+++|+ +||||+|+||+++. +||||+||||+|++|+++|++.|.++|..++.+|
T Consensus 1 ~Gl~g~~~~~T~IS~id~~~g~L~yRG~di~dL~~~~---------~feeva~LL~~G~lP~~~e~~~f~~~l~~~~~~p 71 (356)
T cd06110 1 KGLEGVIAADSKISYIDGDAGILIYRGYDIHDLAENS---------TFEEVAYLLWNGELPTAEELDAFKAQLAAERELP 71 (356)
T ss_pred CCCCCCeeeeeeceEEECCCCeEEECCeeHHHHHhcC---------CHHHHHHHHHcCcCCCHHHHHHHHHhhhhccCCC
Confidence 4999999999999999999995 99999999999875 6999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccCCCCCCCchHHHHHHHHHhhhHHHHHHHHHHhcCCcccC
Q 015697 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 235 (402)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~~~~~ 235 (402)
+.+.++++.+|++.|||++|+++|++++.+++.. .+..|+..++++++|||++|+|+|++|++..+ .+++.
T Consensus 72 ~~v~~~~~~~p~~~~pm~~l~~~v~~l~~~~~~~--------~~~~~~~~~~~a~~lla~~p~i~a~~~~~~~~-~~~~~ 142 (356)
T cd06110 72 AEIIDLLKLLPKDAHPMDVLRTAVSALALYDPEA--------DDMSREANLRKAIRLIAKMPTIVAAFHRIRNG-LEPVA 142 (356)
T ss_pred HHHHHHHHhCCCCCCchHHHHHHHHhhhhcCCCc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCC
Confidence 9999999999999999999999999998765432 23458889999999999999999999887654 45889
Q ss_pred CCCCCCHHHHHHHhhCC--CChHHHHHHHHHHHHhccCCCCCChhHHHHHHhccCCChHHHHHHHhhcccCCccccchHH
Q 015697 236 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 313 (402)
Q Consensus 236 p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~Lil~aDHeg~n~St~aarvvaSt~sd~y~avaAgi~aL~GplHGgAne~ 313 (402)
|+++++|++||++|+++ +++...++||++||+||||| +|+||||+|+++||++|+|+|++|||++|+||+|||||+.
T Consensus 143 p~~~~~~a~~~l~~l~g~~p~~~~~~~l~~~Lvl~aDHg-~n~Stfa~Rv~aSt~ad~~~av~agl~al~GplHGgA~~~ 221 (356)
T cd06110 143 PDPDLSHAANFLYMLTGEKPSEEAARAFDVALILHADHE-LNASTFAARVVASTLSDMYSAVTAAIGALKGPLHGGANER 221 (356)
T ss_pred CCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCC-CchhHHHHHHHHhcCCCHHHHHHHHHhhcCCCcccCcHHH
Confidence 99999999999999976 78889999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCChHHHHHHHHhhC---CCChHHHHHHHHHHHH
Q 015697 314 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVV 390 (402)
Q Consensus 314 v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vyr~~DPRa~~l~~~a~~~~---~~d~~~~la~~le~~~ 390 (402)
|++||+++ + +.+++++||++.+++|++||||||||||..|||+++|+++++++. +++++++++.++|+++
T Consensus 222 ~~~~l~~~----~---~~~~~~~~v~~~~~~~~~i~GfGH~vy~~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~ie~~~ 294 (356)
T cd06110 222 VMKMLLEI----G---SVDNVAAYVKDKLANKEKIMGFGHRVYKTGDPRAKHLREMSRRLGKETGEPKWYEMSEAIEQAM 294 (356)
T ss_pred HHHHHHHh----C---CHHHHHHHHHHHHhcCCeecCCCCccCCCCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999987 4 468899999999999999999999999999999999999999973 5679999999999998
Q ss_pred HHH
Q 015697 391 PPI 393 (402)
Q Consensus 391 ~~~ 393 (402)
.+.
T Consensus 295 ~~~ 297 (356)
T cd06110 295 RDE 297 (356)
T ss_pred HHc
Confidence 876
No 32
>PRK14033 citrate synthase; Provisional
Probab=100.00 E-value=4.2e-71 Score=559.44 Aligned_cols=298 Identities=23% Similarity=0.331 Sum_probs=272.9
Q ss_pred ccccccccccceeecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC
Q 015697 75 VIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 153 (402)
Q Consensus 75 ~~~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~ 153 (402)
+..||+||.+++|+||+||+++| ++||||+|+||+++. +||||+||||+|++|+++|++.|+.+|.+++.
T Consensus 9 ~~~GL~gv~v~~S~Is~id~~~g~L~yRG~di~dLa~~~---------sfeeva~LL~~G~lP~~~el~~f~~~l~~~~~ 79 (375)
T PRK14033 9 IKKGLAGVVVDTTAISKVVPETNSLTYRGYPVQDLAARC---------SFEEVAYLLWNGELPTDAELALFSQRERAYRR 79 (375)
T ss_pred CCCCCCCceEeeccCeEEECCCCeEEECCccHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Confidence 56899999999999999999987 699999999999985 69999999999999999999999999999999
Q ss_pred CCHHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccCCCCCCCchHHHHHHHHHhhhHHHHHHHHHHhcCCcc
Q 015697 154 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI 233 (402)
Q Consensus 154 lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~~~ 233 (402)
+|+.+.++++.+|++.|||++|+++|++++.++++. + +..|+...+++++|||++|+|++++|++..+ ..+
T Consensus 80 ~p~~v~~~~~~~p~~~~pm~~l~~~vs~l~~~d~~~--~------~~~~~~~~~~a~~lia~~~~i~a~~~~~~~g-~~~ 150 (375)
T PRK14033 80 LDRSVLSLIDKLPTTCHPMDVVRTAVSYLGAEDPEA--D------DSSPEANLAKALRLFAVLPTIVAADQRRRRG-LDP 150 (375)
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCccc--c------cCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCc
Confidence 999999999999999999999999999999877653 1 2346788899999999999999999998754 358
Q ss_pred cCCCCCCCHHHHHHHhhCC--CChHHHHHHHHHHHHhccCCCCCChhHHHHHHhccCCChHHHHHHHhhcccCCccccch
Q 015697 234 IPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLAN 311 (402)
Q Consensus 234 ~~p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~Lil~aDHeg~n~St~aarvvaSt~sd~y~avaAgi~aL~GplHGgAn 311 (402)
++|+++++|++||++|+++ |++..+++||.+|||||||| +|+||||+|+++||++|+|+||+|||++|+||+||||+
T Consensus 151 ~~p~~~~s~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHg-ln~StfaaRv~aSt~adl~~av~agl~al~GplHGGA~ 229 (375)
T PRK14033 151 IAPRSDLGYAENFLHMCFGEVPEPEVVRAFEVSLILYAEHS-FNASTFTARVITSTLSDIYSAVTGAIGALKGPLHGGAN 229 (375)
T ss_pred cCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHhccCCCHHHHHHHHHhhccCccccChH
Confidence 8999999999999999965 68889999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCChHHHHHHHHhhC---CCChHHHHHHHHHH
Q 015697 312 QEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFE 388 (402)
Q Consensus 312 e~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vyr~~DPRa~~l~~~a~~~~---~~d~~~~la~~le~ 388 (402)
+.|++||.++ + +.+++++||++.+++|++||||||||||..|||+++|++.++++. +.++++++++++++
T Consensus 230 e~~~~~l~ei----~---~~~~~~~~v~~~~~~~~~l~GFGH~vyk~~DPRa~~L~~~l~~l~~~~~~~~~~~~~~~i~~ 302 (375)
T PRK14033 230 EAVMHTMLEI----G---DPARAAEWLRDALARKEKVMGFGHRVYKHGDSRVPTMKAALRRVAAVRDGQRWLDIYEALEK 302 (375)
T ss_pred HHHHHHHHHh----C---ChhHHHHHHHHHHhCCCceecCCCCCCCCCCchHHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence 9999999886 4 468999999999999999999999999999999999999988864 45789999999999
Q ss_pred HHHHHHHhcC
Q 015697 389 VVPPILTKLG 398 (402)
Q Consensus 389 ~~~~~l~~~~ 398 (402)
++.+..+.++
T Consensus 303 ~~~~~~gl~p 312 (375)
T PRK14033 303 AMAEATGIKP 312 (375)
T ss_pred HHHHHhCCCC
Confidence 8877644333
No 33
>PRK12350 citrate synthase 2; Provisional
Probab=100.00 E-value=2.1e-69 Score=541.80 Aligned_cols=273 Identities=23% Similarity=0.286 Sum_probs=235.6
Q ss_pred ccccccccceeecceecCCCCc-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHH---HHHHHHHhhC
Q 015697 77 GGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVD---GLSKELRDRA 152 (402)
Q Consensus 77 ~Glrgv~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~---~f~~~L~~~~ 152 (402)
.||+||.+++|+||+||+++|+ +||||+|+||++++ +||||+||||+|+|||+.|.+ .|+..+.
T Consensus 3 ~GL~~v~~~~s~Is~idg~~G~L~YRGy~i~dLa~~~---------sFeEva~LL~~G~LP~~~~~~~~~~~~~~~~--- 70 (353)
T PRK12350 3 PGLEGVVAFETEIAEPDGDGGALRYRGVDIEDLVGRV---------TFEDVWALLVDGRFGPGLPPAEPFPLPVHLG--- 70 (353)
T ss_pred CCCCCceeEeeeCcceeCCCCEEEECCccHHHHhccC---------CHHHHHHHHHCCCCCCcchhhhccchHHHhh---
Confidence 5999999999999999999995 99999999999985 699999999999999987544 3333322
Q ss_pred CCCHHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccCCCCCCCchHHHHHHHHHhhhHHHHHHHHHHhcCCc
Q 015697 153 TVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGK 232 (402)
Q Consensus 153 ~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~~ 232 (402)
..|..+...+.. .|||+.|++++ +. ...+++++|||++|+|+|++||++.++.+
T Consensus 71 ~~~~~~~~~~~~----~~~~~~l~~~~------~~----------------~~~~~~~rliA~~pti~a~~~r~~~g~~~ 124 (353)
T PRK12350 71 DARVDVQAALAM----LAPVWGFRPLL------DI----------------DDLTARLDLARASVMALSAVAQSARGIGQ 124 (353)
T ss_pred ccchhhhhhHHH----hhHHHHHHhhc------CC----------------CCHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 233333333332 45777766643 10 11357799999999999999999876346
Q ss_pred ccCCCCCCCHHHHHHHhhCC-----CChHHHHHHHHHHHHhccCCCCCChhHHHHHHhccCCChHHHHHHHhhcccCCcc
Q 015697 233 IIPKDDSLDYGGNFSHMLGF-----DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLH 307 (402)
Q Consensus 233 ~~~p~~~l~~~~nf~~ml~~-----~~~~~~~~l~~~Lil~aDHeg~n~St~aarvvaSt~sd~y~avaAgi~aL~GplH 307 (402)
+++|++++||++||++||.+ |++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+|
T Consensus 125 ~i~p~~~ls~a~nfl~ml~g~~~~~p~~~~~~~ld~~LiL~ADHg-~naSTfaaRv~aSt~adlysav~agi~aL~GplH 203 (353)
T PRK12350 125 PAVPQREIDHAATILERFMGRWRGEPDPAHVAALDAYWVSAAEHG-MNASTFTARVIASTGADVAAALSGAIGALSGPLH 203 (353)
T ss_pred CcCCCCCCCHHHHHHHHhccCccCCCCHHHHHHHHHHHHHhccCC-CCcchHHHHHHhccCCcHHHHHHHHHhhcCCCcc
Confidence 88999999999999999964 47889999999999999998 9999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCChHHHHHHHHhhCCCChHHHHHHHHH
Q 015697 308 GLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLF 387 (402)
Q Consensus 308 GgAne~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vyr~~DPRa~~l~~~a~~~~~~d~~~~la~~le 387 (402)
|||||.|++||.++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. ++++++++++|
T Consensus 204 GGA~e~v~~ml~ei----~---~~~~~~~~v~~~l~~~~ri~GFGHrvYk~~DPRa~~L~~~~~~l~--~~~~~ia~~le 274 (353)
T PRK12350 204 GGAPARVLPMLDAV----E---RTGDARGWVKGALDRGERLMGFGHRVYRAEDPRARVLRATAKRLG--APRYEVAEAVE 274 (353)
T ss_pred cChHHHHHHHHHHh----C---ChhhHHHHHHHHHHCCCccccCCCCCCCCCCCCHHHHHHHHHHhC--ChHHHHHHHHH
Confidence 99999999999886 5 468999999999999999999999999999999999999999985 69999999999
Q ss_pred HHHHHHHHhc
Q 015697 388 EVVPPILTKL 397 (402)
Q Consensus 388 ~~~~~~l~~~ 397 (402)
+++.+.+++.
T Consensus 275 ~~~~~~~~~~ 284 (353)
T PRK12350 275 QAALAELRER 284 (353)
T ss_pred HHHHHHHHHh
Confidence 9999987664
No 34
>cd06101 citrate_synt Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the
Probab=100.00 E-value=3.8e-54 Score=418.07 Aligned_cols=199 Identities=44% Similarity=0.706 Sum_probs=186.2
Q ss_pred ccccccccceeecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCC
Q 015697 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (402)
Q Consensus 77 ~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp 155 (402)
+||+|+++++|+||.+|+++| ++||||+|.||++++ +||||+||||+|+||
T Consensus 1 ~gl~~~~~~~t~is~id~~~g~l~yRGy~i~dL~~~~---------~f~ev~~LL~~G~lP------------------- 52 (265)
T cd06101 1 PGLRGVAALESEISVIDGDEGGLRYRGYPIEELAENS---------SFEEVAYLLLTGELP------------------- 52 (265)
T ss_pred CCCCCcceeeeEEEEEeCCCCEEEECCeeHHHHHhcC---------CHHHHHHHHHcCCCC-------------------
Confidence 499999999999999999998 699999999999986 699999999999999
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccCCCCCCCchHHHHHHHHHhhhHHHHHHHHHHhcCCcccC
Q 015697 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 235 (402)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~~~~~ 235 (402)
T Consensus 53 -------------------------------------------------------------------------------- 52 (265)
T cd06101 53 -------------------------------------------------------------------------------- 52 (265)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCHHHHHHHhhCC--CChHHHHHHHHHHHHhccCCCCCChhHHHHHHhccCCChHHHHHHHhhcccCCccccchHH
Q 015697 236 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 313 (402)
Q Consensus 236 p~~~l~~~~nf~~ml~~--~~~~~~~~l~~~Lil~aDHeg~n~St~aarvvaSt~sd~y~avaAgi~aL~GplHGgAne~ 313 (402)
+|++||++|+++ +++.++++||.+||+||||| +|+||||+|+++||++|+|+|++|||++|+||+||||++.
T Consensus 53 -----~~~~nfl~m~~g~~p~~~~~~~l~~~Lvl~aDHg-~naST~aaRv~aSt~ad~~~av~agl~al~Gp~HGGA~e~ 126 (265)
T cd06101 53 -----SYAENFLYMLGGEEPDPEFAKAMDLALILHADHE-GNASTFTARVVGSTLSDPYSAIAAAIAALKGPLHGGANEA 126 (265)
T ss_pred -----cHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCCC-CchHHHHHHHHHccCCcHHHHHHHHHHhCCCCCcCCHHHH
Confidence 899999999987 78999999999999999999 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCChHHHHHHHHhhCC---CChHHHHHHHHHHHH
Q 015697 314 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLP---DDPLFQLVSKLFEVV 390 (402)
Q Consensus 314 v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vyr~~DPRa~~l~~~a~~~~~---~d~~~~la~~le~~~ 390 (402)
|++||.++.+ . ..++++++|++.+++|++|||||||||++.|||+++|+++++++.. ++++++++.++++++
T Consensus 127 ~~~~l~~i~~----~-~~~~~~~~v~~~~~~~~~i~GFGH~vy~~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~~e~~~ 201 (265)
T cd06101 127 VLKMLEEIGT----P-KNEPAEAYIRKKLNSKRVLMGFGHRVYKKYDPRATVLKKFAEKLLKEKGLDPMFELAAELEKIA 201 (265)
T ss_pred HHHHHHHhCc----c-ccccHHHHHHHHHhcCCCccCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 9999998732 1 2368899999999999999999999999999999999999999754 589999999999999
Q ss_pred HHHH
Q 015697 391 PPIL 394 (402)
Q Consensus 391 ~~~l 394 (402)
.+..
T Consensus 202 ~~~~ 205 (265)
T cd06101 202 PEVL 205 (265)
T ss_pred HHHh
Confidence 8875
No 35
>cd06102 citrate_synt_like_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=100.00 E-value=2.6e-47 Score=372.27 Aligned_cols=213 Identities=24% Similarity=0.299 Sum_probs=183.1
Q ss_pred ccccceeecceecCCCCceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCHHHHH
Q 015697 81 GMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYK 160 (402)
Q Consensus 81 gv~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp~~v~~ 160 (402)
|.++++|.||.|++ ++++||||++.||+++. +||||+||||+|++|
T Consensus 17 g~~~~~t~It~i~~-~~~~yRG~da~~L~~~~---------~~e~va~LLw~g~~~------------------------ 62 (282)
T cd06102 17 GEPVLESAITLITE-GRLFYRGRDAVELAETA---------TLEEVAALLWDGDEA------------------------ 62 (282)
T ss_pred CCceEEeeeEEEeC-CeeEEcCccHHHHHhcC---------CHHHHHHHHHcCCch------------------------
Confidence 55799999999986 44999999999999986 699999999999998
Q ss_pred HHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccCCCCCCCchHHHHHHHHHhhhHHHHHHHHHHhcCCcccCCCCCC
Q 015697 161 AIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSL 240 (402)
Q Consensus 161 ~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~~~~~p~~~l 240 (402)
. ..+++++. .. .+ .+.++.
T Consensus 63 ---------------~-------------------------------~~l~~~~~------~~------~~---~~~~~~ 81 (282)
T cd06102 63 ---------------A-------------------------------RLLRLLAA------AL------LG---AAPSDA 81 (282)
T ss_pred ---------------H-------------------------------HHHHHHHH------Hh------cc---CCCCcc
Confidence 0 01111111 10 01 233467
Q ss_pred CHHHHHHHhhCCCChHHHHHHHHHHHHhccCCCCCChhHHHHHHhccCCChHHHHHHHhhcccCCccccchHHHHHHHHH
Q 015697 241 DYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKS 320 (402)
Q Consensus 241 ~~~~nf~~ml~~~~~~~~~~l~~~Lil~aDHeg~n~St~aarvvaSt~sd~y~avaAgi~aL~GplHGgAne~v~~~l~~ 320 (402)
++++||++|++++ +...++||.+|||+|||| +|+|||++|+++||++|+|+|++||+++|+||+||||++.|++||.+
T Consensus 82 ~~~~~~~~~~~~~-~~~~~~l~~~LVL~ADHg-ln~St~aaRv~AStgadl~~avaagl~al~Gp~HGGA~~~a~~~l~e 159 (282)
T cd06102 82 PVHRRLARAWGLD-PAAADLLRRALVLLADHE-LNASTFAARVAASTGASLYAAVLAGLAALSGPRHGGATARVEALLDE 159 (282)
T ss_pred cHHHHHHHHhcCC-HHHHHHHHHHHHHHhccC-CCcHHHHHHHHhccCCcHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Confidence 9999999999874 468899999999999998 99999999999999999999999999999999999999999999998
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHhcCC
Q 015697 321 VVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGK 399 (402)
Q Consensus 321 i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vyr~~DPRa~~l~~~a~~~~~~d~~~~la~~le~~~~~~l~~~~k 399 (402)
+. +.+++++||++.+++|++|||||||||+..|||+++|+++++++.+ ++++++.++++++.+..+.+++
T Consensus 160 ~~-------~~~~~~~~v~~~l~~g~~ipGFGH~vy~~~DPRa~~L~~~~~~~~~--~~~~~a~~ve~~~~~~~gl~pN 229 (282)
T cd06102 160 AL-------RAGDAEAAVRERLRRGEALPGFGHPLYPDGDPRAAALLAALRPLGP--AAPPAARALIEAARALTGARPN 229 (282)
T ss_pred hc-------CCccHHHHHHHHHHcCCcccCCCCCCCCCCCccHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHCCCCC
Confidence 73 2468899999999999999999999999999999999999999876 9999999999999887654443
No 36
>PRK06224 citrate synthase; Provisional
Probab=100.00 E-value=7.5e-41 Score=324.82 Aligned_cols=181 Identities=23% Similarity=0.290 Sum_probs=163.1
Q ss_pred cceeecceecCCCCceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHh
Q 015697 84 GLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAID 163 (402)
Q Consensus 84 ~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp~~v~~~i~ 163 (402)
-..|.||.+|+++ +.||||+|.||+++. +|+|++||||+|++|+++|+
T Consensus 8 ~~~T~i~~~~~~~-l~yrG~~~~dL~~~~---------sf~e~~~lll~G~lP~~~e~---------------------- 55 (263)
T PRK06224 8 WWRTSISDVTPEE-IYVRGYDLEDLIGKL---------SFTDMIFLLLRGRLPTPNEA---------------------- 55 (263)
T ss_pred CCceeeeeecCCe-eEECCccHHHHhhcC---------CHHHHHHHHHcCCCCCHHHH----------------------
Confidence 4569999999877 999999999999885 69999999999999986663
Q ss_pred cCCCCCChHHHHHHHHHHhhccchhhHHhhhccCCCCCCCchHHHHHHHHHhhhHHHHHHHHHHhcCCcccCCCCCCCHH
Q 015697 164 ALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYG 243 (402)
Q Consensus 164 ~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~~~~~p~~~l~~~ 243 (402)
T Consensus 56 -------------------------------------------------------------------------------- 55 (263)
T PRK06224 56 -------------------------------------------------------------------------------- 55 (263)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHhccCCCCCChhHHHHHHhccCCChHHHHHHHhhcccCCccccchHHHHHHHHHHHH
Q 015697 244 GNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVD 323 (402)
Q Consensus 244 ~nf~~ml~~~~~~~~~~l~~~Lil~aDHeg~n~St~aarvvaSt~sd~y~avaAgi~aL~GplHGgAne~v~~~l~~i~~ 323 (402)
++|+.+||++|||| +|||||++|+++||++|+|+|++||++++ ||+||||++.|++||.++..
T Consensus 56 ---------------r~f~a~Lv~~adHg-~~~St~aar~~ast~~~l~~av~agl~a~-G~~hgGa~~~a~~~l~e~~~ 118 (263)
T PRK06224 56 ---------------RLLDAVLVALVDHG-LTPSAAAARMTASGGESLQGAVAAGLLAL-GSVHGGAGEQAAELLQEIAA 118 (263)
T ss_pred ---------------HHHHHHHHHHhccC-CCcHHHHHHHHHhcCccHHHHHHHHHhhc-ccccCChhHHHHHHHHHHHh
Confidence 23566689999998 99999999999999999999999999999 99999999999999999976
Q ss_pred hcCCCCC-hhhHHHHHHHHHhCCCcccccCCCCCCCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHHHH
Q 015697 324 ECGENVT-TEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPI 393 (402)
Q Consensus 324 ~ig~~~s-~~~~~~~v~~~l~~g~~IpGfGH~Vyr~~DPRa~~l~~~a~~~~~~d~~~~la~~le~~~~~~ 393 (402)
.++++.+ ++++++||++.+++|++||||||++||..|||+++|+++++++...++++++++++++++.+.
T Consensus 119 ~~~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~~y~~~DPRa~~L~~~~~~~~~~~~~~~~a~~~~~~~~~~ 189 (263)
T PRK06224 119 AADAGADLDAAARAIVAEYRAAGKRVPGFGHPLHKPVDPRAPRLLALAREAGVAGRHCRLAEALEAALAAA 189 (263)
T ss_pred hccccccHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 5553223 457899999999999999999999999999999999999999987889999999999998875
No 37
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) from citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. Some CS proteins function as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. CCL cleaves citryl-CoA (CiCoA) to AcCoA and OAA. ACLs catalyze an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA; they do this in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. The overall CS reaction is thought to proceed through three partial reactions and i
Probab=100.00 E-value=1e-39 Score=307.85 Aligned_cols=150 Identities=43% Similarity=0.694 Sum_probs=137.9
Q ss_pred CHHHHHHHhhCC--CChHHHHHHHHHHHHhccCCCCCChhHHHHHHhccCCChHHHHHHHhhcccCCccccchHHHHHHH
Q 015697 241 DYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWI 318 (402)
Q Consensus 241 ~~~~nf~~ml~~--~~~~~~~~l~~~Lil~aDHeg~n~St~aarvvaSt~sd~y~avaAgi~aL~GplHGgAne~v~~~l 318 (402)
||++||++|+++ |++.++++||.+||+|+||| +|+||||+|+++||++|+|+|++|||++++||+||||++.|++||
T Consensus 1 ~~~~~fl~ml~g~~p~~~~~~~l~~~lvl~aDHg-~~~St~aar~~aSt~ad~~~av~Agl~al~Gp~hGGa~~~a~~~l 79 (213)
T cd06099 1 SYAENFLYMLGGEEPDPEFARAMDLALILHADHE-GNASTFTARVVGSTGSDPYSAIAAAIGALKGPLHGGANEAVLKML 79 (213)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCC-CchhhHHHHHHhccCCCHHHHHHHHHHHcCCCCcCCHHHHHHHHH
Confidence 699999999987 89999999999999999999 799999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCChHHHHHHHHhhCC---CChHHHHHHHHHHHHHHHHH
Q 015697 319 KSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLP---DDPLFQLVSKLFEVVPPILT 395 (402)
Q Consensus 319 ~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vyr~~DPRa~~l~~~a~~~~~---~d~~~~la~~le~~~~~~l~ 395 (402)
+++ +.. ..++++++|++.+++|++|||||||||+..|||+++|+++++++.. .++++++++++|+++.+...
T Consensus 80 ~e~----~~~-~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~le~~~~~~~~ 154 (213)
T cd06099 80 EEI----GTP-KNEPAEAYIRKKLESKRVIMGFGHRVYKKYDPRATVLKKFAEELLKEDGDDPMFELAAELEKIAEEVLY 154 (213)
T ss_pred HHh----CCc-ccccHHHHHHHHHhCCCcccCCCCCCCCCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhh
Confidence 987 321 2368899999999999999999999999999999999999999854 35999999999999988764
Q ss_pred h
Q 015697 396 K 396 (402)
Q Consensus 396 ~ 396 (402)
+
T Consensus 155 ~ 155 (213)
T cd06099 155 E 155 (213)
T ss_pred c
Confidence 3
No 38
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to acetyl-CoA (AcCoA) and oxaloacetate (OAA). ACL catalyzes an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. In fungi, yeast, plants, and animals ACL is cytosolic and generates AcCoA for lipogenesis. ACL may be required for fruiting body maturation in the filamentous fungus Sordaria macrospore. In several groups of autotrophic prokaryotes and archaea, ACL carries out the citrate-cleavage reaction of the reductive tricarboxylic acid (rTCA) cycle. In the family Aquificaceae this latter reaction in the rTCA cycle is carried out via a two enzyme system the second enzyme of which is CCL; the first enzyme is citryl-CoA synthetase (CC
Probab=100.00 E-value=8.7e-35 Score=276.76 Aligned_cols=152 Identities=26% Similarity=0.322 Sum_probs=140.0
Q ss_pred CCCHHHHHHHhhCC--CChHHHHHHHHHHHHhccCCCCCChhHHHHHHhccC-CChHHHHHHHhhcccCCccccchHHHH
Q 015697 239 SLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASAL-SDPYLSFAAALNGLAGPLHGLANQEVL 315 (402)
Q Consensus 239 ~l~~~~nf~~ml~~--~~~~~~~~l~~~Lil~aDHeg~n~St~aarvvaSt~-sd~y~avaAgi~aL~GplHGgAne~v~ 315 (402)
+.+|.+||++|+.+ |++.+.++|+.+|++++|||.+|||||++|+++||+ +|+|+|++||++++ ||+||||++.++
T Consensus 10 ~~sf~e~~~lml~G~~P~~~e~~~f~~~Lvl~adhg~~~~St~aar~~astg~~~~~~~vaag~~a~-G~~hgga~e~~~ 88 (227)
T cd06100 10 KISFGDVLYLLLKGRLPTPYEARLLEALLVALADHGPATPSAHAARLTASAGPEDLQSAVAAGLLGI-GDRFGGAGEGAA 88 (227)
T ss_pred CCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHcCCccHHHHHHHHHhcc-CCcccChHHHHH
Confidence 57999999999976 888899999999999999993399999999999999 99999999999999 999999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHHHH
Q 015697 316 LWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPI 393 (402)
Q Consensus 316 ~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vyr~~DPRa~~l~~~a~~~~~~d~~~~la~~le~~~~~~ 393 (402)
+||+++.+..++ .++++++||++.+++|++|||||||||+..|||+++|+++++++...+|+++++.++++++.+.
T Consensus 89 ~~l~~~~~~~~~--~~~~~~~~v~~~~~~~~~ipGfGH~v~~~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (227)
T cd06100 89 RLFKEAVDSGDA--LDAAAAEFVAEYRAAKKRIPGFGHPVHKNPDPRVPRLLELARELGPAGPHLDYALAVEKALTAA 164 (227)
T ss_pred HHHHHHHhcccc--hHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 999998653222 3579999999999999999999999999999999999999999988889999999999988664
No 39
>PLN02522 ATP citrate (pro-S)-lyase
Probab=100.00 E-value=1.6e-34 Score=305.97 Aligned_cols=126 Identities=22% Similarity=0.317 Sum_probs=115.8
Q ss_pred HHHHHHHHHhccCCCCCChh-HHHHHHhccCCChHHHHHHHhhcccCCccccchHHHHHHHHHHHHhcCCCCChhhHHHH
Q 015697 259 ELMRLYVTIHSDHEGGNVSA-HTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDY 337 (402)
Q Consensus 259 ~~l~~~Lil~aDHeg~n~St-~aarvvaSt~sd~y~avaAgi~aL~GplHGgAne~v~~~l~~i~~~ig~~~s~~~~~~~ 337 (402)
++||++||++|||| +|+|| |++|+++||++|+|+|++||++++ ||+||||++.|++||+++.+ +..++++|
T Consensus 401 ~~ld~~Lvl~ADHG-~~aSt~~aarv~AStg~dl~savaaGl~al-Gp~hGGA~e~a~~~l~ei~~------~~~~~~~~ 472 (608)
T PLN02522 401 KFIEMCIMLCADHG-PCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYD------RGLTPYEF 472 (608)
T ss_pred HHHHHHHHHhccCC-CCccHHHHHHHhhccCCcHHHHHHHHHHhc-CCcccchHHHHHHHHHHHhc------cccCHHHH
Confidence 56889999999998 99998 689999999999999999999998 99999999999999998742 23478999
Q ss_pred HHHHHhCCCcccccCCCCC--CCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHHH
Q 015697 338 VWKTLNSGKVVPGFGHGVL--RKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPP 392 (402)
Q Consensus 338 v~~~l~~g~~IpGfGH~Vy--r~~DPRa~~l~~~a~~~~~~d~~~~la~~le~~~~~ 392 (402)
|.+.+++|++||||||||| ++.|||+++|+++++++++..+++++++++|+++.+
T Consensus 473 V~~~~~~~~~IpGFGHrvy~~~~~DpRa~~L~~~~~~~~~~~~~~~~a~~vE~~~~~ 529 (608)
T PLN02522 473 VEGMKKKGIRVPGIGHRIKSRDNRDKRVELLQKYARTHFPSVKYMEYAVQVETYTLS 529 (608)
T ss_pred HHHHHhCCCccccCCCCCCCCCCCChhHHHHHHHHHHhccccHHHHHHHHHHHHHhh
Confidence 9999999999999999999 578999999999999998889999999999998644
No 40
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion]
Probab=98.75 E-value=8.6e-09 Score=106.18 Aligned_cols=128 Identities=22% Similarity=0.230 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHhccCCCCCCh-hHHHHHHhccCCChHHHHHHHhhcccCCccccchHHHHHHHHHHHHhcCCCCChhhH
Q 015697 256 KMLELMRLYVTIHSDHEGGNVS-AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQL 334 (402)
Q Consensus 256 ~~~~~l~~~Lil~aDHeg~n~S-t~aarvvaSt~sd~y~avaAgi~aL~GplHGgAne~v~~~l~~i~~~ig~~~s~~~~ 334 (402)
-...+++.++.+.+||+ ..+| ++-+-+.+.++.|+++++++|+.. .|++.|||...+.|.+.+..++ | -.+
T Consensus 390 Ya~kfie~~~m~~aDhg-p~Vsga~ntI~~~ra~kdl~sslv~gLlt-igdRfggald~aaR~f~~ayd~-G-----L~~ 461 (600)
T KOG1254|consen 390 YARKFIEICTMLTADHG-PAVSGAGNTIANFRAGKDLFSSLVRGLLT-IGDRFGGALDIAARRFGPAYDK-G-----LAP 461 (600)
T ss_pred HHHHHHHHHhhccCCCC-ceeEeccCceEEeccHHHHHHHHHHHHhh-hhhhhcchhhHHHHhcChhhhc-c-----Cch
Confidence 34579999999999998 7776 566777788899999999999999 6999999988888888665432 2 467
Q ss_pred HHHHHHHHhCCCcccccCCCCC--CCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q 015697 335 KDYVWKTLNSGKVVPGFGHGVL--RKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVP 391 (402)
Q Consensus 335 ~~~v~~~l~~g~~IpGfGH~Vy--r~~DPRa~~l~~~a~~~~~~d~~~~la~~le~~~~ 391 (402)
.+++.++++.+..|||.||++- .+.|-|..+++++++++|+..|+++.|.++|++..
T Consensus 462 m~fv~~~~k~~~~V~Gighriksi~n~d~rv~~lk~~~~~~fp~~~~~~yal~ve~~t~ 520 (600)
T KOG1254|consen 462 MRFVGKMRKVPIEVYGIGHRIKSINNPDKRVEILKAFARKNFPATPLLDYALEVEKITT 520 (600)
T ss_pred HHHhhhhhCCCceecCCcceeeccCCcccchhhHHHHHHhhCCCchHHHhhhhheeeec
Confidence 8999999999999999999997 57799999999999999999999999999998753
No 41
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to acetyl-CoA (AcCoA) and oxaloacetate (OAA). ACL catalyzes an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. In fungi, yeast, plants, and animals ACL is cytosolic and generates AcCoA for lipogenesis. ACL may be required for fruiting body maturation in the filamentous fungus Sordaria macrospore. In several groups of autotrophic prokaryotes and archaea, ACL carries out the citrate-cleavage reaction of the reductive tricarboxylic acid (rTCA) cycle. In the family Aquificaceae this latter reaction in the rTCA cycle is carried out via a two enzyme system the second enzyme of which is CCL; the first enzyme is citryl-CoA synthetase (CC
Probab=97.89 E-value=3.2e-05 Score=74.03 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=55.9
Q ss_pred CCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--C-CHHHHHHHhcCCCC-CChHHHHHH
Q 015697 102 GLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--V-PDYVYKAIDALPVT-AHPMTQFAS 177 (402)
Q Consensus 102 Gy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~--l-p~~v~~~i~~lP~~-~hPM~~l~~ 177 (402)
||+|.||+++. +|+|++|||++|++|+++|++.|...|....+ + ...+....-.--.. .+|-..+.+
T Consensus 1 G~~~~dL~~~~---------sf~e~~~lml~G~~P~~~e~~~f~~~Lvl~adhg~~~~St~aar~~astg~~~~~~~vaa 71 (227)
T cd06100 1 GYDLSDLIGKI---------SFGDVLYLLLKGRLPTPYEARLLEALLVALADHGPATPSAHAARLTASAGPEDLQSAVAA 71 (227)
T ss_pred CCCHHHHHhCC---------CHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHcCCccHHHHHHH
Confidence 89999999875 59999999999999999999999998865542 3 34433322222223 677888888
Q ss_pred HHHHhhc
Q 015697 178 GVMALQV 184 (402)
Q Consensus 178 av~aL~~ 184 (402)
++++++.
T Consensus 72 g~~a~G~ 78 (227)
T cd06100 72 GLLGIGD 78 (227)
T ss_pred HHhccCC
Confidence 8888853
No 42
>KOG2617 consensus Citrate synthase [Energy production and conversion]
Probab=95.07 E-value=0.0078 Score=61.76 Aligned_cols=179 Identities=16% Similarity=0.041 Sum_probs=113.1
Q ss_pred ceehhcccccccc------------cccceeecceecCCCCceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhC---
Q 015697 69 NITVDMVIGGMRG------------MTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTG--- 133 (402)
Q Consensus 69 ~~tv~~~~~Glrg------------v~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G--- 133 (402)
..+|+...++|+| +.++.-.+.-+++++.|+|++.-++||-+..++.+-.++..-+-..|.++.|
T Consensus 257 ~gnVsAh~~HLvGSaldpyls~aa~~~GLaGPLHGlAnqEvl~~L~~~~~Eig~~~s~e~ikeyiw~~ln~~rvvpGyGH 336 (458)
T KOG2617|consen 257 GGNVSAHTGHLVGSALDPYLSFAAGMNGLAGPLHGLANQEVLRFLGKLIEEIGKDLSKENIKEYIWKTLNSGRVVPGYGH 336 (458)
T ss_pred cCcHHHHhccccccccchhHHHHHhhcccccccccCchHHHHHHHHHhHHHhccccchhhhhHhhHHhhccccccccccc
Confidence 6678888899999 8888899999999999999999999998776543221111111122344442
Q ss_pred --CCCCHHHHHHHHHHHHhhCCCCHH-HHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccCCCCCCCchHHHHH
Q 015697 134 --KVPSKEQVDGLSKELRDRATVPDY-VYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSL 210 (402)
Q Consensus 134 --~lPt~~ql~~f~~~L~~~~~lp~~-v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~k~~~~~~~~e~a~ 210 (402)
--+|..+....++.+.++ +|+. ..++.. +-.-++|.++....-+.+.+..+...+--.+.-.-+||..|.+.+
T Consensus 337 avlr~tDPR~~~~~efA~k~--~~~d~l~~l~~--~l~~~~p~vl~e~gk~knp~PNVD~~SGvll~~yGl~e~~fyTVL 412 (458)
T KOG2617|consen 337 AVLRKTDPRYKVQREFALKH--LPDDPLFLLVS--ALYKIAPGVLTEHGKVKNPYPNVDAHSGVLLQYYGLPELFFYTVL 412 (458)
T ss_pred ccccCCCchhhHHHHHHHhc--CCCCcchhhhH--HHHHhChHHHHHhcccCCCCCcHHHHHHHHHHhcCCcHHHHHHHH
Confidence 135666665555554444 4432 233322 223467777776666666655443222111344456999999999
Q ss_pred HHHHhhhHHHHHHHHHHhcCCccc-CCCCCCCHHHHHHHhhC
Q 015697 211 NLIARVPVVAAYVYQRIYKDGKII-PKDDSLDYGGNFSHMLG 251 (402)
Q Consensus 211 ~LiAklp~iaa~iyr~~~~~~~~~-~p~~~l~~~~nf~~ml~ 251 (402)
-.+++++-+++-+++.+.-+..+. |-+-+.+|..+|..+..
T Consensus 413 FgVsRa~Gvlsqliw~ralg~pieRPks~~t~~~~~~~~~~~ 454 (458)
T KOG2617|consen 413 FGVSRALGVLSQLIWDRALGLPIERPKSVSTDWLHRFTNMVR 454 (458)
T ss_pred HHHhhhHHHHHHHHHHHHhCCcccCccccchHHHHHHHHHhh
Confidence 999999999988766554433333 33456788888877763
No 43
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) from citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. Some CS proteins function as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. CCL cleaves citryl-CoA (CiCoA) to AcCoA and OAA. ACLs catalyze an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA; they do this in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. The overall CS reaction is thought to proceed through three partial reactions and i
Probab=87.80 E-value=2 Score=40.82 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=45.7
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCCHHHHHHHhcCCCCCChHHHHHHHHHHhh
Q 015697 123 PEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDYVYKAIDALPVTAHPMTQFASGVMALQ 183 (402)
Q Consensus 123 ~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (402)
|-+.+|++++|+.|+++|.+.|..-|.-.. .++..+....-.-...++|-.-+.++++++.
T Consensus 2 ~~~~fl~ml~g~~p~~~~~~~l~~~lvl~aDHg~~~St~aar~~aSt~ad~~~av~Agl~al~ 64 (213)
T cd06099 2 YAENFLYMLGGEEPDPEFARAMDLALILHADHEGNASTFTARVVGSTGSDPYSAIAAAIGALK 64 (213)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCchhhHHHHHHhccCCCHHHHHHHHHHHcC
Confidence 568999999999999999999999886554 2555444433333344678888999999883
No 44
>PRK14037 citrate synthase; Provisional
Probab=83.15 E-value=3.2 Score=42.95 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCCHHHHHHHhcCCCCCChHHHHHHHHHHhh
Q 015697 121 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDYVYKAIDALPVTAHPMTQFASGVMALQ 183 (402)
Q Consensus 121 ~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (402)
-+|-+.+|++++|+.|++++.+.|..-|.-+. .++..+....-.-...++|-..+++|+.+|.
T Consensus 150 ~s~a~nfl~ml~G~~p~~~~~~~l~~~Lil~ADHg~naST~aarv~aSt~ad~ysav~agi~al~ 214 (377)
T PRK14037 150 DSFAESFLLASFAREPTAEEIKAMDAALILYTDHEVPASTTAALVAASTLSDMYSCITAALAALK 214 (377)
T ss_pred CCHHHHHHHHHhccCCcHHHHHHHHHHHhHhcccCCchHhHHHHHhhccCCCHHHHHHHHHHhcc
Confidence 35789999999999999999999998886554 3677766644434455688899999999983
No 45
>PRK14035 citrate synthase; Provisional
Probab=76.61 E-value=6.6 Score=40.61 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCCHHHHHHHhcCCCCCChHHHHHHHHHHhh
Q 015697 121 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDYVYKAIDALPVTAHPMTQFASGVMALQ 183 (402)
Q Consensus 121 ~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (402)
-+|-+.+|++++|+.|+++|.+.|..-|.-+. .+........-.-...++|...+.+|+.+|.
T Consensus 150 ls~~~nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg~naST~aaRv~aSt~ad~~sav~Agi~al~ 214 (371)
T PRK14035 150 LSYAANFLYMLRGELPTDIEVEAFNKALVLHADHELNASTFTARCAVSSLSDMYSGVVAAVGSLK 214 (371)
T ss_pred CCHHHHHHHHhccCCCCHHHHHHHHHHHHHhccCCCCchHHHHHHHHhcCCcHHHHHHHHHHhcc
Confidence 36889999999999999999999998886554 2443333322222344578899999998874
No 46
>PRK12349 citrate synthase 3; Provisional
Probab=76.43 E-value=8.5 Score=39.72 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=47.3
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCCHHHHHHHhcCCCCCChHHHHHHHHHHhh
Q 015697 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDYVYKAIDALPVTAHPMTQFASGVMALQ 183 (402)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (402)
+|-+.+|++++|+.|++++.+.|..-|.-.. .++..+....-.-..-++|-..+.+|+++|.
T Consensus 154 ~~a~nfl~ml~g~~p~~~~~~~~~~~Lvl~ADH~lnaStfa~Rv~aSt~ad~~~av~agl~al~ 217 (369)
T PRK12349 154 SYSANFLYMLTGKKPTELEEKIFDRSLVLYSEHEMPNSTFTARVIASTQSDLYGALTGAVASLK 217 (369)
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCcCccHHHHHHHHHHccCccHHHHHHHHHHhcc
Confidence 5779999999999999999999999986554 3666655433333344578889999999883
No 47
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=76.31 E-value=4.8 Score=41.57 Aligned_cols=60 Identities=18% Similarity=0.112 Sum_probs=45.3
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCCHH--HHHHHhcCCCCCChHHHHHHHHHHhh
Q 015697 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (402)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~lp~~--v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (402)
+|-+.+|++++|+.|++++.+.|..-|.-.. .+... ...++.+ ..++|...+.+|+.+|.
T Consensus 152 s~~~nfl~ml~g~~p~~~~~~~l~~~Lil~aDHg~n~STfaaRvvaS--t~ad~~s~~~aai~al~ 215 (373)
T cd06112 152 DYAENFLYMLFGEEPDPATAKILDACLILHAEHTMNASTFSALVTGS--TLADPYAVISSAIGTLS 215 (373)
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCchHHHHHHHHh--cCCcHHHHHHHHHHhcc
Confidence 5889999999999999999999998886554 24444 3344433 34678888888888884
No 48
>PRK14034 citrate synthase; Provisional
Probab=75.51 E-value=7.3 Score=40.29 Aligned_cols=64 Identities=16% Similarity=0.198 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCCHHHHHHHhcCCCCCChHHHHHHHHHHhhc
Q 015697 121 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDYVYKAIDALPVTAHPMTQFASGVMALQV 184 (402)
Q Consensus 121 ~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~ 184 (402)
-+|-+.+|++++|+.|+++|.+.|..-|.-.. .+........-.....++|-..+++|+.+|..
T Consensus 150 ls~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~aDHg~n~ST~aaRv~aSt~~d~ysav~agi~al~G 215 (372)
T PRK14034 150 LSLAANFLYMLNGEEPDEVEVEAFNKALVLHADHELNASTFTARVCVATLSDVYSGITAAIGALKG 215 (372)
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCCCCccHHHHHHHhccCCcHHHHHHHHhcccCC
Confidence 36889999999999999999999998886554 24444333333333456788888888888753
No 49
>PRK14036 citrate synthase; Provisional
Probab=74.11 E-value=8.8 Score=39.77 Aligned_cols=63 Identities=19% Similarity=0.116 Sum_probs=46.5
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCCHHHHHHHhcCCCCCChHHHHHHHHHHhhc
Q 015697 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDYVYKAIDALPVTAHPMTQFASGVMALQV 184 (402)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~ 184 (402)
+|-+.+|++++|+.|++++.+.|..-|.-.. .+........-.-..-++|...+.+|+.+|..
T Consensus 153 ~~a~nfl~ml~g~~p~~~~~~~l~~~Lil~ADHg~naST~aaRv~aSt~ad~ys~v~agi~aL~G 217 (377)
T PRK14036 153 DYAANFLYMLTEREPDPLAARIFDRCLILHAEHTINASTFSARVTASTLTDPYAVIASAVGTLAG 217 (377)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHhhhccCCCCchHHHHHHHHhcCCcHHHHHHHHHHHccC
Confidence 6889999999999999999999999886554 24444443333333446788888888888743
No 50
>PRK14033 citrate synthase; Provisional
Probab=67.81 E-value=17 Score=37.58 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=45.0
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCCHH--HHHHHhcCCCCCChHHHHHHHHHHhh
Q 015697 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (402)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~lp~~--v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (402)
+|-+.+|++++|+.|++++.+.|..-|.-.. .+... +..++.+ ..++|-..+.+|+++|.
T Consensus 158 s~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHgln~StfaaRv~aS--t~adl~~av~agl~al~ 221 (375)
T PRK14033 158 GYAENFLHMCFGEVPEPEVVRAFEVSLILYAEHSFNASTFTARVITS--TLSDIYSAVTGAIGALK 221 (375)
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCcHHHHHHHHhc--cCCCHHHHHHHHHhhcc
Confidence 5889999999999999999999998875443 24444 4444444 34578888889999883
No 51
>PRK12351 methylcitrate synthase; Provisional
Probab=67.07 E-value=19 Score=37.36 Aligned_cols=60 Identities=22% Similarity=0.220 Sum_probs=45.6
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCCHH--HHHHHhcCCCCCChHHHHHHHHHHhh
Q 015697 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (402)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~lp~~--v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (402)
++-+.+|++++|+.|++++.+.|..-|.-+. .+... +..++.+ .-++|-..+++|+.+|.
T Consensus 158 s~a~Nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~~naST~aaRvvaS--t~ad~~sav~agi~aL~ 221 (378)
T PRK12351 158 SIGGHFLHLLHGKKPSESWVKAMHTSLILYAEHEFNASTFTARVIAG--TGSDMYSAITGAIGALR 221 (378)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccCCchHHHHHHHHhc--cCCCHHHHHHHHHHhcc
Confidence 5779999999999999999999999886554 24443 4444444 34578888889999883
No 52
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. DsCS, compared with CS from the hyperthermophile Pyrococcus furiosus (not included in this group), has an increase in the size of surface loops, a higher proline content in the loop regions, a more accessible active site, and a highe
Probab=66.53 E-value=18 Score=37.19 Aligned_cols=61 Identities=18% Similarity=0.162 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCCH--HHHHHHhcCCCCCChHHHHHHHHHHhh
Q 015697 121 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPD--YVYKAIDALPVTAHPMTQFASGVMALQ 183 (402)
Q Consensus 121 ~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~lp~--~v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (402)
-+|-+.+|++++|+.|++++.+.|..-|.-.. .+.. .+..++.+- -++|-..+.+++++|.
T Consensus 147 ls~a~nfl~m~~g~~p~~~~~~~l~~~Lvl~ADHg~n~St~aaR~~aSt--~ad~~~av~agl~aL~ 211 (362)
T cd06111 147 LGIAENFLHMCFGEVPSPEVVRAFDVSLILYAEHSFNASTFTARVITST--LSDIYSAITGAIGALK 211 (362)
T ss_pred cCHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhccCCchhHHHHHHHHcc--CCCHHHHHHHHHhhcc
Confidence 35889999999999999999999998765443 2443 344455543 3577788888888874
No 53
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MC
Probab=64.51 E-value=20 Score=36.98 Aligned_cols=61 Identities=15% Similarity=0.167 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCCHH--HHHHHhcCCCCCChHHHHHHHHHHhh
Q 015697 121 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (402)
Q Consensus 121 ~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~lp~~--v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (402)
-+|-+.+|.+++|+.|++++.+.|..-|.-.. .+... +..++.+ ..++|-..+++|+.+|.
T Consensus 145 ~s~a~nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~~n~St~aaRv~aS--t~ad~~sav~agi~al~ 209 (363)
T cd06108 145 DSIAGHFLHLLHGKKPGELEIKAMDVSLILYAEHEFNASTFAARVTAS--TLSDFYSAITGAIGTLR 209 (363)
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhccCCCcchHHHHHHHhc--cCCCHHHHHHHHHHhcc
Confidence 36889999999999999999999998886543 24443 4444444 44678888999998883
No 54
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=62.57 E-value=23 Score=37.13 Aligned_cols=60 Identities=10% Similarity=0.029 Sum_probs=45.3
Q ss_pred CHHHHHHHHHhC-CCCCHHHHHHHHHHHHhh---CCCCHH--HHHHHhcCCCCCChHHHHHHHHHHhh
Q 015697 122 LPEGLLWLLLTG-KVPSKEQVDGLSKELRDR---ATVPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (402)
Q Consensus 122 ~~Eev~~LLl~G-~lPt~~ql~~f~~~L~~~---~~lp~~--v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (402)
+|-+.||++++| +.|++++.+.|..-|.-. ..++.. +..++.+- -++|-..+++|+.+|.
T Consensus 175 s~a~nfl~ml~g~~~p~~~~~~~l~~~Lvl~ADHg~~naST~aaRv~aSt--~ad~~~avaagi~al~ 240 (406)
T cd06113 175 STAENILSMLRPDKKYTELEAKLLDLCLVLHAEHGGGNNSTFTTRVVSSS--GTDTYSAIAAAIGSLK 240 (406)
T ss_pred CHHHHHHHHhccCCCCCHHHHHHHHHHHhhhhccCCCcchHHHHHHHHcc--CCCHHHHHHHHHHHcc
Confidence 588999999999 599999999999888533 324444 44455553 4588899999999983
No 55
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate, but has a partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate, prefer PrCoA as substrate, but can also can use AcCoA. Re 2-MCS1 at a low rate can use butyryl-CoA and valeryl-CoA. A second Ralstonia eu
Probab=61.50 E-value=27 Score=36.01 Aligned_cols=60 Identities=18% Similarity=0.167 Sum_probs=45.4
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCCHH--HHHHHhcCCCCCChHHHHHHHHHHhh
Q 015697 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (402)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~lp~~--v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (402)
++-+.||.+++|+.|++++.+.|..-|.-.. .+... ...++.+ ..++|-..+++|+.+|.
T Consensus 149 s~a~Nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg~n~ST~aarv~aS--t~ad~~sav~agi~aL~ 212 (366)
T cd06117 149 SIGGHFLHLLHGEKPSESWEKAMHISLILYAEHEFNASTFTARVIAG--TGSDMYSAITGAIGALR 212 (366)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccCCchHHHHHHHHHc--cCCcHHHHHHHHHHhcc
Confidence 5778999999999999999999999886554 24444 4444444 34578888889998884
No 56
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II. Members of this family are dimeric enzymes with activity as 2-methylcitrate synthase, citrate synthase, or both. Many Gram-negative species have a hexameric citrate synthase, termed citrate synthase I (TIGR01798). Members of this family (TIGR01800) appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesize 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme.
Probab=60.25 E-value=31 Score=35.62 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCCH--HHHHHHhcCCCCCChHHHHHHHHHHhh
Q 015697 121 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPD--YVYKAIDALPVTAHPMTQFASGVMALQ 183 (402)
Q Consensus 121 ~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~lp~--~v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (402)
.+|.+.+|++++|+.|++++.+.|..-|.-.. .+.. .+..++.+ ..++|-..+.+++.+|.
T Consensus 147 ~~~~~n~l~ml~g~~p~~~~~~~l~~~Lvl~ADHg~n~St~aaRv~aS--t~adl~~av~agl~al~ 211 (368)
T TIGR01800 147 DSHAANFLYMLHGEEPSKEEEKAMDIALILYAEHEFNASTFAARVAAS--TLSDMYSAITAAIGALK 211 (368)
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCCCchHHHHHHHHhc--cCCCHHHHHHHHHhhcC
Confidence 46889999999999999999999998886544 2444 34455555 34678888999998884
No 57
>PRK14032 citrate synthase; Provisional
Probab=58.38 E-value=31 Score=36.59 Aligned_cols=60 Identities=8% Similarity=0.082 Sum_probs=45.6
Q ss_pred CHHHHHHHHHhCC-CCCHHHHHHHHHHHHhh---CCCCHHHH--HHHhcCCCCCChHHHHHHHHHHhh
Q 015697 122 LPEGLLWLLLTGK-VPSKEQVDGLSKELRDR---ATVPDYVY--KAIDALPVTAHPMTQFASGVMALQ 183 (402)
Q Consensus 122 ~~Eev~~LLl~G~-lPt~~ql~~f~~~L~~~---~~lp~~v~--~~i~~lP~~~hPM~~l~~av~aL~ 183 (402)
+|-+.||.+++|+ .|++++.+.|..-|.-+ ..++..+. .++.+ ..++|-..+.+|+.+|.
T Consensus 205 s~a~nfl~ml~g~~~p~~~~~~~ld~~LiL~ADHg~~naSTfaaRv~aS--t~ad~ysavaagi~aL~ 270 (447)
T PRK14032 205 STAENILYMLRPDNKYTELEARLLDLALVLHAEHGGGNNSTFTTRVVSS--SGTDTYSAIAAAIGSLK 270 (447)
T ss_pred CHHHHHHHHhccCCCCCHHHHHHHHHHHHHHhccCCCchhHHHHHHHHc--cCCcHHHHHHHHHHhcc
Confidence 5779999999999 99999999999888544 32455444 44444 44688899999999983
No 58
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-II, the major CS of the gram-positive bacterium Bacillus subtilis. A mutation in the gene which encodes BsCS-II (citZ gene) has been described which resulted in a significant loss of CS activity, partial glutamate auxotrophy, and a sporulation deficiency, a
Probab=58.17 E-value=31 Score=35.35 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=45.7
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCC--HHHHHHHhcCCCCCChHHHHHHHHHHhh
Q 015697 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVP--DYVYKAIDALPVTAHPMTQFASGVMALQ 183 (402)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~lp--~~v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (402)
+|-+.+|++++|+.|++++.+.|..-|.-.. .+. ..+..++.+-. ++|-..+.+++++|.
T Consensus 148 ~~a~~~l~~l~g~~p~~~~~~~l~~~Lvl~aDHg~n~Stfa~Rv~aSt~--ad~~~av~agl~al~ 211 (356)
T cd06110 148 SHAANFLYMLTGEKPSEEAARAFDVALILHADHELNASTFAARVVASTL--SDMYSAVTAAIGALK 211 (356)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCchhHHHHHHHHhcC--CCHHHHHHHHHhhcC
Confidence 5778999999999999999999998886544 233 34556666654 577788888888883
No 59
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-I, one of two CS isozymes in the gram-positive B. subtilis. The majority of CS activity in B. subtilis is provided by the other isozyme, BsCS-II (not included in this group). BsCS-
Probab=57.89 E-value=31 Score=35.40 Aligned_cols=60 Identities=22% Similarity=0.244 Sum_probs=45.5
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--C--CCHHHHHHHhcCCCCCChHHHHHHHHHHhh
Q 015697 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--T--VPDYVYKAIDALPVTAHPMTQFASGVMALQ 183 (402)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~--lp~~v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (402)
++-+.+|.+++|+.|++++.+.|..-|.-.. . .+..+..++.+ .-++|-..+++|+.+|.
T Consensus 137 s~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHg~n~ST~aaRv~aS--t~ad~~savaagi~al~ 200 (349)
T cd06109 137 SHAADYLRMLTGEPPSEAHVRALDAYLVTVADHGMNASTFTARVIAS--TEADLTSAVLGAIGALK 200 (349)
T ss_pred CHHHHHHHHhCCCCCChHHHHHHHHHHhHhcccCCCchhhHHHHHhc--cCCcHHHHHHHHHHhcc
Confidence 5788999999999999999999999886443 2 33344455554 34578899999999983
No 60
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=57.75 E-value=33 Score=35.20 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=46.6
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCCHH--HHHHHhcCCCCCChHHHHHHHHHHhh
Q 015697 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (402)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~lp~~--v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (402)
+|-+.+|.+++|+.|++++.+.|..-|.-.. .++.. +..++.+- .++|-..+++|+.+|.
T Consensus 148 ~~~~~~~~~~~g~~p~~~~~~~l~~~Lvl~aDH~~n~Stfa~R~~aSt--~ad~~~av~agl~al~ 211 (358)
T cd06118 148 SYAENFLYMLFGEEPDPEEAKAMDLALILHADHEGNASTFTARVVAST--LSDMYSAIAAAIAALK 211 (358)
T ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCCCCChHHHHHHHHHcc--CCCHHHHHHHHHHHcc
Confidence 4678999999999999999999999886554 35553 44555554 4688899999999984
No 61
>cd06101 citrate_synt Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the
Probab=55.26 E-value=49 Score=32.50 Aligned_cols=78 Identities=21% Similarity=0.187 Sum_probs=53.3
Q ss_pred CCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCCHHHHHHHhcCCCCCChHHHHHHHHH
Q 015697 103 LSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDYVYKAIDALPVTAHPMTQFASGVM 180 (402)
Q Consensus 103 y~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~--~lp~~v~~~i~~lP~~~hPM~~l~~av~ 180 (402)
.+.+|.+-.+= .|+-|++-+.++.+++|+-|+++|.+.|..-|.-.. .+...+....-.-...++|-..+.++++
T Consensus 37 ~~f~ev~~LL~---~G~lP~~~~nfl~m~~g~~p~~~~~~~l~~~Lvl~aDHg~naST~aaRv~aSt~ad~~~av~agl~ 113 (265)
T cd06101 37 SSFEEVAYLLL---TGELPSYAENFLYMLGGEEPDPEFAKAMDLALILHADHEGNASTFTARVVGSTLSDPYSAIAAAIA 113 (265)
T ss_pred CCHHHHHHHHH---cCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCCCCchHHHHHHHHHccCCcHHHHHHHHHH
Confidence 56666655432 234456888999999999999999999998876544 2444333333233344678888889999
Q ss_pred Hhh
Q 015697 181 ALQ 183 (402)
Q Consensus 181 aL~ 183 (402)
+|.
T Consensus 114 al~ 116 (265)
T cd06101 114 ALK 116 (265)
T ss_pred hCC
Confidence 884
No 62
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site []. The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH []. This entry represents types I and II citrate synthase enzymes, as well as the related enzymes 2-methylcitrate synthase and ATP citrate synthase. 2-methylcitrate (2.3.3.5 from EC) synthase catalyses the conversion of oxaloacetate and propanoyl-CoA into (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate and coenzyme A. This enzyme is induced during bacterial growth on propionate, while type II hexameric citrate synthase is constitutive []. ATP citrate synthase (2.3.3.8 from EC) (also known as ATP citrate lyase) catalyses the MgATP-dependent, CoA-dependent cleavage of citrate into oxaloacetate and acetyl-CoA, a key step in the reductive tricarboxylic acid pathway of CO2 assimilation used by a variety of autotrophic bacteria and archaea to fix carbon dioxide []. ATP citrate synthase is composed of two distinct subunits. In eukaryotes, ATP citrate synthase is a homotetramer of a single large polypeptide, and is used to produce cytosolic acetyl-CoA from mitochondrial produced citrate [].; GO: 0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, 0044262 cellular carbohydrate metabolic process; PDB: 2C6X_D 3L96_B 1OWB_B 1NXG_A 1K3P_A 1OWC_B 3L97_B 1NXE_A 3L98_A 3L99_A ....
Probab=53.48 E-value=49 Score=33.85 Aligned_cols=62 Identities=24% Similarity=0.250 Sum_probs=43.4
Q ss_pred CHHHHHHHHH--hCCCCCHHHHHHHHHHHHhhC--CCCHHHHHHHhcCCCCCChHHHHHHHHHHhh
Q 015697 122 LPEGLLWLLL--TGKVPSKEQVDGLSKELRDRA--TVPDYVYKAIDALPVTAHPMTQFASGVMALQ 183 (402)
Q Consensus 122 ~~Eev~~LLl--~G~lPt~~ql~~f~~~L~~~~--~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (402)
++-|.++.+| +|+-|++++.+.|..-|.-.. .+...+...--.-...++|-..+.+|+++|.
T Consensus 148 ~~~~n~l~~l~~~g~~p~~~~~~~l~~~lvl~aDH~~~~St~aaR~~aSt~~~~~~av~agl~al~ 213 (356)
T PF00285_consen 148 SYAENFLYMLGVTGREPDPEEARALDAALVLHADHGLNPSTFAARVAASTGADLYSAVAAGLAALS 213 (356)
T ss_dssp SHHHHHHHHHH-HSSB--HHHHHHHHHHHHHHS--SSSHHHHHHHHHHTTT--HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhccccCCChHHHHHHHHHHHhhcCCCCCccchhhhhhhccCcchhHHHHhhhhhcc
Confidence 5778888888 999999999999999987654 3555544333333456789999999999984
No 63
>PTZ00096 40S ribosomal protein S15; Provisional
Probab=41.71 E-value=19 Score=32.38 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=17.5
Q ss_pred ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHH
Q 015697 98 IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWL 129 (402)
Q Consensus 98 i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~L 129 (402)
..||||+++||.+- ..||++=|
T Consensus 15 f~yRG~~l~~L~~m----------~~~e~~~L 36 (143)
T PTZ00096 15 FTYRGVELEKLLAL----------PEEELVEL 36 (143)
T ss_pred eeeecCCHHHHHcC----------CHHHHHHH
Confidence 38999999999986 36776655
No 64
>PF07583 PSCyt2: Protein of unknown function (DUF1549); InterPro: IPR011444 The function is not known. It is found associated with IPR022655 from INTERPRO. It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=41.58 E-value=31 Score=32.85 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.3
Q ss_pred HHHHHHhCCCCCHHHHHHHHHH
Q 015697 126 LLWLLLTGKVPSKEQVDGLSKE 147 (402)
Q Consensus 126 v~~LLl~G~lPt~~ql~~f~~~ 147 (402)
=++|=|+|.+||.+|+++|.+.
T Consensus 30 Rv~LDL~G~~PT~eEv~~Fl~d 51 (208)
T PF07583_consen 30 RVYLDLTGLPPTPEEVRAFLAD 51 (208)
T ss_pred HHHHHHhCCCcCHHHHHHHHhC
Confidence 4689999999999999999763
No 65
>PRK13890 conjugal transfer protein TrbA; Provisional
Probab=40.45 E-value=1.3e+02 Score=25.95 Aligned_cols=41 Identities=24% Similarity=0.216 Sum_probs=19.4
Q ss_pred ecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCC-CCCHHHHHHHHHHH
Q 015697 100 FRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGK-VPSKEQVDGLSKEL 148 (402)
Q Consensus 100 yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~-lPt~~ql~~f~~~L 148 (402)
-||++.+||++.+-- + .+.++-+..|+ -|+.+-+..+.+.|
T Consensus 16 ~~Glsq~eLA~~~Gi-------s-~~~is~iE~g~~~ps~~~l~kIa~aL 57 (120)
T PRK13890 16 ERHMTKKELSERSGV-------S-ISFLSDLTTGKANPSLKVMEAIADAL 57 (120)
T ss_pred HcCCCHHHHHHHHCc-------C-HHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 456666666665410 1 23444444444 35555555444443
No 66
>PRK04038 rps19p 30S ribosomal protein S19P; Provisional
Probab=37.39 E-value=26 Score=31.29 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=17.3
Q ss_pred ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHH
Q 015697 98 IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWL 129 (402)
Q Consensus 98 i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~L 129 (402)
..|||++++||.+- ..||++=|
T Consensus 7 f~yrG~~l~~L~~m----------~~~~~~~l 28 (134)
T PRK04038 7 FTYRGYTLEELQEM----------SLEEFAEL 28 (134)
T ss_pred eeecccCHHHHHcC----------CHHHHHHH
Confidence 37999999999986 36776655
No 67
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=35.92 E-value=74 Score=30.76 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=43.2
Q ss_pred CCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCC-CCCHHHHHHHHHHHHhhCCCCHHHHHHHhcCC
Q 015697 103 LSIPECQKLLPAAKPDGEPLPEGLLWLLLTGK-VPSKEQVDGLSKELRDRATVPDYVYKAIDALP 166 (402)
Q Consensus 103 y~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~-lPt~~ql~~f~~~L~~~~~lp~~v~~~i~~lP 166 (402)
||-+||.+.+ ..+|.++|==.+|+ +|+.++.++|-.+|..+..+.+.+.+-+.-+|
T Consensus 24 ~ty~el~~~~--------g~p~~~l~RYv~g~~~P~~~~a~~~~~~l~~~~~~~~~l~~ri~~~~ 80 (238)
T PRK08558 24 YTYEELSSIT--------GLPESVLNRYVNGHVLPSVERAREIVEKLGPYYNLEEEVKARIKVDD 80 (238)
T ss_pred cCHHHHHHHH--------CCCHHHHHHHHcCCcCCCHHHHHHHHHHHHHhhhhHHHHHhhcccCC
Confidence 5888998875 26899999999998 79999999999999877666555555444344
No 68
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=34.60 E-value=62 Score=26.08 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCC
Q 015697 123 PEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 154 (402)
Q Consensus 123 ~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~l 154 (402)
.|-|-||+-.|+..+.+|.-.+-+.|...+-+
T Consensus 32 selVdWL~~~~~~~~R~eAv~~gq~Ll~~g~i 63 (81)
T cd04448 32 KELVNWLIRQGKAATRVQAIAIGQALLDAGWI 63 (81)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCE
Confidence 57899999999999999999999988776643
No 69
>TIGR01025 rpsS_arch ribosomal protein S19(archaeal)/S15(eukaryotic). This model represents eukaryotic ribosomal protein S15 and its archaeal equivalent. It excludes bacterial and organellar ribosomal protein S19. The nomenclature for the archaeal members is unresolved and given variously as S19 (after the more distant bacterial homologs) or S15.
Probab=33.39 E-value=31 Score=30.77 Aligned_cols=14 Identities=36% Similarity=0.809 Sum_probs=12.4
Q ss_pred ceecCCCHHHHhhh
Q 015697 98 IRFRGLSIPECQKL 111 (402)
Q Consensus 98 i~yRGy~I~eL~~~ 111 (402)
..|||++++||.+-
T Consensus 5 f~yrG~~l~~L~~m 18 (135)
T TIGR01025 5 FRYRGYTLEELQDM 18 (135)
T ss_pred EeecccCHHHHHcC
Confidence 37999999999986
No 70
>PF03461 TRCF: TRCF domain; InterPro: IPR005118 This domain is found in proteins necessary for strand-specific repair in DNA such as TRCF in Escherichia coli. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by the transcription-repair-coupling factor (TRCF) which releases RNAP and the truncated transcript.; GO: 0003684 damaged DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0006281 DNA repair; PDB: 2QSR_A 2EYQ_A.
Probab=33.29 E-value=57 Score=27.18 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHHhh-CCCCHHHHHHHhcCCCCCChHHHHHHHHHHhhc
Q 015697 134 KVPSKEQVDGLSKELRDR-ATVPDYVYKAIDALPVTAHPMTQFASGVMALQV 184 (402)
Q Consensus 134 ~lPt~~ql~~f~~~L~~~-~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~ 184 (402)
..-|.+|+.++..+|..| +.+|+.|..++.. ..++.....++-
T Consensus 28 ~~~~~~el~~l~~El~DRFG~~P~ev~~L~~~--------~~lk~~a~~~gi 71 (101)
T PF03461_consen 28 SAESEEELEDLREELIDRFGPLPEEVENLLEL--------ARLKILARKLGI 71 (101)
T ss_dssp C--SHHHHHHHHHHHHHHH-S--HHHHHHHHH--------HHHHHHHHHCTE
T ss_pred hCCCHHHHHHHHHHHHHHcCCCcHHHHHHHHH--------HHHHHHHHHCCC
Confidence 346889999999999887 6899999998863 445555555543
No 71
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=33.12 E-value=6e+02 Score=26.70 Aligned_cols=72 Identities=13% Similarity=0.048 Sum_probs=46.0
Q ss_pred HHHHHhccCCChHHHHHHHhhcccCCccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCC
Q 015697 280 TGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKT 359 (402)
Q Consensus 280 aarvvaSt~sd~y~avaAgi~aL~GplHGgAne~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vyr~~ 359 (402)
|+|+++-.+ |+-++-..|.-|..--+|--+-...++-+.++ +++..-..+.++.+++=..| ||-.+-..
T Consensus 231 TarlA~~~g-Dp~la~icg~IAaDE~rHe~fY~~iV~~~le~--------dPd~tm~Aiadmm~~ki~MP--a~~m~dg~ 299 (390)
T PLN00179 231 TARLAKEHG-DAKLAKICGTIAADEKRHETAYTRIVEKLFEI--------DPDGAVLAFADMMRKKITMP--AHLMYDGR 299 (390)
T ss_pred HHHHHHhcC-ChHHHHHHHHHhccHHHHHHHHHHHHHHHHhh--------CccHHHHHHHHHHHhcCCCC--cccCCCCC
Confidence 556665544 66666666655557778865555555444443 45666667888888877787 67777666
Q ss_pred CCC
Q 015697 360 DPR 362 (402)
Q Consensus 360 DPR 362 (402)
||.
T Consensus 300 d~~ 302 (390)
T PLN00179 300 DDN 302 (390)
T ss_pred cch
Confidence 765
No 72
>COG0372 GltA Citrate synthase [Energy production and conversion]
Probab=32.79 E-value=1.3e+02 Score=31.51 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=48.8
Q ss_pred CHHHHHHHHHhCCCCC-HHHHHHHHHHHHhhC--CCCHHHHHHHhcCCCCCChHHHHHHHHHHhh
Q 015697 122 LPEGLLWLLLTGKVPS-KEQVDGLSKELRDRA--TVPDYVYKAIDALPVTAHPMTQFASGVMALQ 183 (402)
Q Consensus 122 ~~Eev~~LLl~G~lPt-~~ql~~f~~~L~~~~--~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (402)
++-+-|..+|+|+.|+ +.+.+.|..-|.-+. .++..+....-.-..-++|-.-+.+||++|.
T Consensus 163 s~a~nfL~ml~g~~p~~~~~~~a~d~~LiL~ADHe~NASTftarvvaST~sd~ys~i~agi~aL~ 227 (390)
T COG0372 163 SYAENFLYMLFGEPPSPPVEARAMDRALILHADHELNASTFTARVVASTGSDLYACIAAGIGALK 227 (390)
T ss_pred cHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHhccCCCcHHHHHHHHHhcCCcHHHHHHHHHHHcC
Confidence 5778999999999999 489999998876554 3777666555445556789999999999993
No 73
>PRK12350 citrate synthase 2; Provisional
Probab=31.05 E-value=1.4e+02 Score=30.74 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=44.4
Q ss_pred CHHHHHHHHHhCC---CCCHHHHHHHHHHHHhhC--CCC--HHHHHHHhcCCCCCChHHHHHHHHHHhh
Q 015697 122 LPEGLLWLLLTGK---VPSKEQVDGLSKELRDRA--TVP--DYVYKAIDALPVTAHPMTQFASGVMALQ 183 (402)
Q Consensus 122 ~~Eev~~LLl~G~---lPt~~ql~~f~~~L~~~~--~lp--~~v~~~i~~lP~~~hPM~~l~~av~aL~ 183 (402)
++-+.|+.+++|+ .|++++.+.|..-|.-.. .+. .....++.+ ..++|-..+.+|+.+|.
T Consensus 133 s~a~nfl~ml~g~~~~~p~~~~~~~ld~~LiL~ADHg~naSTfaaRv~aS--t~adlysav~agi~aL~ 199 (353)
T PRK12350 133 DHAATILERFMGRWRGEPDPAHVAALDAYWVSAAEHGMNASTFTARVIAS--TGADVAAALSGAIGALS 199 (353)
T ss_pred CHHHHHHHHhccCccCCCCHHHHHHHHHHHHHhccCCCCcchHHHHHHhc--cCCcHHHHHHHHHhhcC
Confidence 5778888899999 999999999999886554 233 344445444 34578888888988883
No 74
>PF09350 DUF1992: Domain of unknown function (DUF1992); InterPro: IPR018961 This entry represents a family of proteins that may have a role in protein folding or as a chaperone. DnaJ is a member of the J-protein family, which are defined by the presence of a J domain that can regulate the activity of 70kDa heat-shock proteins []. Some of the proteins in this entry contain a J domain.
Probab=28.88 E-value=2.9e+02 Score=21.71 Aligned_cols=57 Identities=19% Similarity=0.348 Sum_probs=39.2
Q ss_pred HHHHHHHHHhCCC--cccccCCCCCCCCC-CChHHHHHHHHhhCC----CChHHHHHHHHHHHH
Q 015697 334 LKDYVWKTLNSGK--VVPGFGHGVLRKTD-PRYTCQREFALKHLP----DDPLFQLVSKLFEVV 390 (402)
Q Consensus 334 ~~~~v~~~l~~g~--~IpGfGH~Vyr~~D-PRa~~l~~~a~~~~~----~d~~~~la~~le~~~ 390 (402)
+++-|++..++|+ .+||.|-++=...+ |....-..++.+.+. --|++++-..+++..
T Consensus 2 ~e~~I~~A~~~GeFdnLpG~GKPL~~~~~~~~~~~~~~~~~~iLk~~g~lPp~i~l~kei~~l~ 65 (71)
T PF09350_consen 2 AERRIREAMARGEFDNLPGAGKPLPLDDDNPYWPAEERMANRILKNAGYLPPWIELRKEIEELR 65 (71)
T ss_pred HHHHHHHHHHcCCccCCCCCCCCCCCCCCCcCCCHHHHHHHHhhcccCCCCHHHHHHHHHHHHH
Confidence 3566778888884 79999998875554 666555555555442 357888888887643
No 75
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=23.49 E-value=1.3e+02 Score=26.99 Aligned_cols=72 Identities=17% Similarity=0.133 Sum_probs=39.7
Q ss_pred CCCCChhhHHHHHHHHHhCCCcc--cccCCCCCCC--CCCChHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHhc
Q 015697 326 GENVTTEQLKDYVWKTLNSGKVV--PGFGHGVLRK--TDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKL 397 (402)
Q Consensus 326 g~~~s~~~~~~~v~~~l~~g~~I--pGfGH~Vyr~--~DPRa~~l~~~a~~~~~~d~~~~la~~le~~~~~~l~~~ 397 (402)
|.+.+.+++++|+.+.+.....| |-+-+.+... ..-|.....+.=+......|+.+..+++.+.+.+.|.+.
T Consensus 9 G~P~~~~~v~~yL~~~~~d~~vi~~p~~~~~~l~~~I~~~r~~k~~~~Y~~ig~~SPL~~~t~~q~~~l~~~L~~~ 84 (159)
T cd03411 9 GGPESLEDVRPFLKNFLSDRRVIELPRPLRPILAGIILPRRPPKVAKNYKKIGGGSPLNEITRAQAEALEKALDER 84 (159)
T ss_pred CCCCCHHHHHHHHHHHcCCCCcccCCHHHHHHHHHHhcccccHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhcc
Confidence 54445667777777766554432 1110111100 233444444444444456888888888888888887663
No 76
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group is similar to gram-negative Escherichia coli (Ec) CS (type II, gltA) and Arabidopsis thaliana (Ath) peroxisomal (Per) CS. However EcCS and AthPerCS are not found in this group. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers w
Probab=22.81 E-value=2.4e+02 Score=29.34 Aligned_cols=63 Identities=19% Similarity=0.028 Sum_probs=46.1
Q ss_pred CHHHHHHHHHhCC-----CCCHHHHHHHHHHHHhhC--CCCHHHHHHHhcCCCCCChHHHHHHHHHHhhc
Q 015697 122 LPEGLLWLLLTGK-----VPSKEQVDGLSKELRDRA--TVPDYVYKAIDALPVTAHPMTQFASGVMALQV 184 (402)
Q Consensus 122 ~~Eev~~LLl~G~-----lPt~~ql~~f~~~L~~~~--~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~ 184 (402)
++-+-|..+++|+ -|++++.+.|..-|.-+. .+...+....-.-...++|...+++|+.+|..
T Consensus 155 s~a~Nfl~Ml~g~~~~~~~p~~~~~~~l~~~LiL~ADH~~n~STfaarv~aSt~ad~ysav~agi~aL~G 224 (384)
T cd06116 155 SYTGNFLSMLFKMTEPKYEPNPVLAKALDVLFILHADHEQNCSTSAMRSVGSSRADPYTAVAAAVAALYG 224 (384)
T ss_pred CHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhhhccCCCCchhHHHhhhhccCCCHHHHHHHHHHhccC
Confidence 4667788889998 899999999999886554 25554444333334567899999999999753
No 77
>PRK02955 small acid-soluble spore protein SspI; Provisional
Probab=22.47 E-value=76 Score=25.10 Aligned_cols=23 Identities=30% Similarity=0.748 Sum_probs=20.4
Q ss_pred ChhhHHHHHHHHHhCCC--cccccC
Q 015697 330 TTEQLKDYVWKTLNSGK--VVPGFG 352 (402)
Q Consensus 330 s~~~~~~~v~~~l~~g~--~IpGfG 352 (402)
|.++++++|.+...+|+ -+||.|
T Consensus 17 s~eel~~~I~daIqsgEEk~LPGLG 41 (68)
T PRK02955 17 SKEELEGTIVDAIQSGEEKMLPGLG 41 (68)
T ss_pred CHHHHHHHHHHHHhccchhcCCcch
Confidence 68999999999998774 799998
No 78
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=22.31 E-value=72 Score=25.01 Aligned_cols=23 Identities=43% Similarity=0.826 Sum_probs=20.4
Q ss_pred ChhhHHHHHHHHHhCC--CcccccC
Q 015697 330 TTEQLKDYVWKTLNSG--KVVPGFG 352 (402)
Q Consensus 330 s~~~~~~~v~~~l~~g--~~IpGfG 352 (402)
+.++++++|.+...+| +-+||.|
T Consensus 15 s~~el~~~I~daI~sgEE~~LPGLG 39 (65)
T PF14098_consen 15 SKEELKDTIEDAIQSGEEKALPGLG 39 (65)
T ss_pred CHHHHHHHHHHHHhccchhcCCchH
Confidence 6899999999999976 4799998
No 79
>PF14908 DUF4496: Domain of unknown function (DUF4496)
Probab=21.82 E-value=63 Score=28.21 Aligned_cols=41 Identities=29% Similarity=0.583 Sum_probs=28.3
Q ss_pred hHHHHHHHHHhCC--CcccccCCCCCC------------CCCCChHHHHHHHHhh
Q 015697 333 QLKDYVWKTLNSG--KVVPGFGHGVLR------------KTDPRYTCQREFALKH 373 (402)
Q Consensus 333 ~~~~~v~~~l~~g--~~IpGfGH~Vyr------------~~DPRa~~l~~~a~~~ 373 (402)
.+-+||.+.|..| -.|||||+--+. ..-|.+....+|+..+
T Consensus 7 a~~~~i~~qL~~~kgV~Ip~fGtFtf~~~~~~~~~~~~~~~rPvF~l~~~f~~~~ 61 (140)
T PF14908_consen 7 ALSEYIERQLSLGKGVSIPGFGTFTFSRQKVDSGGNKNQIRRPVFVLSEKFLQKH 61 (140)
T ss_pred HHHHHHHHHHhcCCCEEeCCCcEEEEEEEeeccCCccccccceEEEECHHHHHhc
Confidence 4668899888754 479999996664 2345566667777654
No 80
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=21.22 E-value=1.4e+02 Score=23.99 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=26.4
Q ss_pred CHHHHHHHHHhCC-CCCHHHHHHHHHHHHhhCC
Q 015697 122 LPEGLLWLLLTGK-VPSKEQVDGLSKELRDRAT 153 (402)
Q Consensus 122 ~~Eev~~LLl~G~-lPt~~ql~~f~~~L~~~~~ 153 (402)
..|-|-||+-+++ +.|.+|.-.+-++|-..+-
T Consensus 32 G~e~VdWL~~~~~~~~~r~eAv~lgq~Ll~~g~ 64 (83)
T cd04449 32 GSEAVSWLINNFEDVDTREEAVELGQELMNEGL 64 (83)
T ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC
Confidence 3688999999876 8999999888888876654
No 81
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=20.30 E-value=90 Score=26.68 Aligned_cols=19 Identities=21% Similarity=0.569 Sum_probs=16.1
Q ss_pred hCCCCCHHHHHHHHHHHHh
Q 015697 132 TGKVPSKEQVDGLSKELRD 150 (402)
Q Consensus 132 ~G~lPt~~ql~~f~~~L~~ 150 (402)
.|.|||.+|++.|-....+
T Consensus 69 ~g~lPt~~eVe~Fl~~v~~ 87 (105)
T PF09702_consen 69 VGYLPTDEEVEDFLDDVER 87 (105)
T ss_pred cCCCCChHHHHHHHHHHHH
Confidence 5999999999999887653
Done!