BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015699
(402 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JAK|A Chain A, Human Pp2a Regulatory Subunit B56g
Length = 392
Score = 345 bits (884), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 160/315 (50%), Positives = 217/315 (68%), Gaps = 1/315 (0%)
Query: 74 LSFKDVSNTQKQNLFVSKLNLCCEVSDF-SDSDKVTAEQDLKRQTLIELADFVSSGSAKF 132
L +DV ++ LF+ KL CC + DF SD +++KR L E+ ++++
Sbjct: 40 LHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVI 99
Query: 133 TEPAISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSY 192
TEP + M ++N+FR PP G + E++EP + AW HLQ+VY+ LRF+
Sbjct: 100 TEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES 159
Query: 193 GSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNI 252
+AKKY+D F+++LL+LFDSEDPRERD LKT LHRIYGKF+ R +IR+ + NI
Sbjct: 160 PDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 219
Query: 253 IYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQL 312
YRF++ETE HNGIAELLEI GSII+GFALPLKEEHKIFL + L+PLHK KS+ +YH QL
Sbjct: 220 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQL 279
Query: 313 TYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPL 372
YCVVQF++KD L + LLKYWP T+S KE+MF++ELEE+L++ +EF KIM PL
Sbjct: 280 AYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPL 339
Query: 373 FRRIGCCLNSSHYQV 387
FR++ C++S H+QV
Sbjct: 340 FRQLAKCVSSPHFQV 354
>pdb|2NPP|B Chain B, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|E Chain E, Structure Of The Protein Phosphatase 2a Holoenzyme
Length = 449
Score = 344 bits (882), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 160/315 (50%), Positives = 217/315 (68%), Gaps = 1/315 (0%)
Query: 74 LSFKDVSNTQKQNLFVSKLNLCCEVSDF-SDSDKVTAEQDLKRQTLIELADFVSSGSAKF 132
L +DV ++ LF+ KL CC + DF SD +++KR L E+ ++++
Sbjct: 28 LHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVI 87
Query: 133 TEPAISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSY 192
TEP + M ++N+FR PP G + E++EP + AW HLQ+VY+ LRF+
Sbjct: 88 TEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES 147
Query: 193 GSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNI 252
+AKKY+D F+++LL+LFDSEDPRERD LKT LHRIYGKF+ R +IR+ + NI
Sbjct: 148 PDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 207
Query: 253 IYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQL 312
YRF++ETE HNGIAELLEI GSII+GFALPLKEEHKIFL + L+PLHK KS+ +YH QL
Sbjct: 208 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQL 267
Query: 313 TYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPL 372
YCVVQF++KD L + LLKYWP T+S KE+MF++ELEE+L++ +EF KIM PL
Sbjct: 268 AYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPL 327
Query: 373 FRRIGCCLNSSHYQV 387
FR++ C++S H+QV
Sbjct: 328 FRQLAKCVSSPHFQV 342
>pdb|2IAE|B Chain B, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|E Chain E, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme
Length = 407
Score = 343 bits (879), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 159/312 (50%), Positives = 216/312 (69%), Gaps = 1/312 (0%)
Query: 77 KDVSNTQKQNLFVSKLNLCCEVSDF-SDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEP 135
+DV ++ LF+ KL CC + DF SD +++KR L E+ ++++ TEP
Sbjct: 2 RDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEP 61
Query: 136 AISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSL 195
+ M ++N+FR PP G + E++EP + AW HLQ+VY+ LRF+
Sbjct: 62 IYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDF 121
Query: 196 DVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYR 255
+AKKY+D F+++LL+LFDSEDPRERD LKT LHRIYGKF+ R +IR+ + NI YR
Sbjct: 122 QPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYR 181
Query: 256 FVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYC 315
F++ETE HNGIAELLEI GSII+GFALPLKEEHKIFL + L+PLHK KS+ +YH QL YC
Sbjct: 182 FIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYC 241
Query: 316 VVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRR 375
VVQF++KD L + LLKYWP T+S KE+MF++ELEE+L++ +EF KIM PLFR+
Sbjct: 242 VVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQ 301
Query: 376 IGCCLNSSHYQV 387
+ C++S H+QV
Sbjct: 302 LAKCVSSPHFQV 313
>pdb|3FGA|B Chain B, Structural Basis Of Pp2a And Sgo Interaction
Length = 403
Score = 339 bits (869), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 157/305 (51%), Positives = 213/305 (69%), Gaps = 1/305 (0%)
Query: 84 KQNLFVSKLNLCCEVSDF-SDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCK 142
++ LF+ KL CC + DF SD +++KR L E+ ++++ TEP +
Sbjct: 5 QEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVH 64
Query: 143 MCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKK 202
M ++N+FR PP G + E++EP + AW HLQ+VY+ LRF+ +AKK
Sbjct: 65 MFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKK 124
Query: 203 YVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETER 262
Y+D F+++LL+LFDSEDPRERD LKT LHRIYGKF+ R +IR+ + NI YRF++ETE
Sbjct: 125 YIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEH 184
Query: 263 HNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDK 322
HNGIAELLEI GSII+GFALPLKEEHKIFL + L+PLHK KS+ +YH QL YCVVQF++K
Sbjct: 185 HNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK 244
Query: 323 DPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNS 382
D L + LLKYWP T+S KE+MF++ELEE+L++ +EF KIM PLFR++ C++S
Sbjct: 245 DSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSS 304
Query: 383 SHYQV 387
H+QV
Sbjct: 305 PHFQV 309
>pdb|2NYL|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|E Chain E, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|E Chain E, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 388
Score = 329 bits (844), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 154/305 (50%), Positives = 208/305 (68%), Gaps = 1/305 (0%)
Query: 84 KQNLFVSKLNLCCEVSDF-SDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCK 142
++ LF+ KL CC + DF SD +++KR L E ++++ TEP +
Sbjct: 1 QEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEXVEYITHNRNVITEPIYPEVVH 60
Query: 143 MCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKK 202
++N FR PP G + E++EP + AW HLQ+VY+ LRF+ +AKK
Sbjct: 61 XFAVNXFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKK 120
Query: 203 YVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETER 262
Y+D F+++LL+LFDSEDPRERD LKT LHRIYGKF+ R +IR+ + NI YRF++ETE
Sbjct: 121 YIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEH 180
Query: 263 HNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDK 322
HNGIAELLEI GSII+GFALPLKEEHKIFL + L+PLHK KS+ +YH QL YCVVQF++K
Sbjct: 181 HNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK 240
Query: 323 DPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNS 382
D L + LLKYWP T+S KE+ F++ELEE+L++ +EF KI PLFR++ C++S
Sbjct: 241 DSTLTEPVVXALLKYWPKTHSPKEVXFLNELEEILDVIEPSEFVKIXEPLFRQLAKCVSS 300
Query: 383 SHYQV 387
H+QV
Sbjct: 301 PHFQV 305
>pdb|1SKN|P Chain P, The Binding Domain Of Skn-1 In Complex With Dna: A New
Dna- Binding Motif
Length = 92
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 322 KDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIG 377
KD +LA++ PV+ Q M +SEL++VL+ S++E+Q+ ++ RR G
Sbjct: 19 KDEQLASD------NELPVSAFQISEMSLSELQQVLKNESLSEYQRQLIRKIRRRG 68
>pdb|1ZYZ|A Chain A, Structures Of Yeast Ribonucloetide Reductase I
pdb|1ZYZ|B Chain B, Structures Of Yeast Ribonucloetide Reductase I
pdb|1ZZD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVS|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVT|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVU|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVV|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVW|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVX|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVY|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2EUD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I Complexed
With Ligands And Subunit Peptides
pdb|2ZLF|A Chain A, The Structural Basis For Peptidomimetic Inhibition Of
Eukaryotic Ribonucleotide Reductase
pdb|2ZLG|A Chain A, The Structual Basis For Peptidomimetic Inhibition Of
Eukaryotic Ribonucleotide Reductase
pdb|3K8T|A Chain A, Structure Of Eukaryotic Rnr Large Subunit R1 Complexed
With Designed Adp Analog Compound
pdb|3PAW|A Chain A, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|B Chain B, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|C Chain C, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|D Chain D, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3S87|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 With Dgtp
And Adp
pdb|3S8B|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 With Amppnp
And Cdp
pdb|3RSR|A Chain A, Crystal Structure Of 5-Nitp Inhibition Of Yeast
Ribonucleotide Reductase
Length = 888
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 61 SSIMAGVEAVEPHLSFKDVSN--TQKQNLFVSKL-NLCCEVSDFSDSDKVTAEQDLKRQT 117
S + A E P + +KD N + ++NL V K NLCCE+ ++S D+ TA +L
Sbjct: 391 SILEAQTETGTPFVVYKDACNRKSNQKNLGVIKSSNLCCEIVEYSAPDE-TAVCNLASVA 449
Query: 118 LIELADFVSSG-SAKFTEPAISGMCKMCSLNLFRVF 152
L + G ++ + + + K+ + NL RV
Sbjct: 450 LPAFIETSEDGKTSTYNFKKLHEIAKVVTRNLNRVI 485
>pdb|3TB9|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With
Amppnp And Cdp
pdb|3TBA|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With
Dgtp And Adp
Length = 888
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 61 SSIMAGVEAVEPHLSFKDVSN--TQKQNLFVSKL-NLCCEVSDFSDSDKVTAEQDLKRQT 117
S + A E P + +KD N + ++NL V K NLCCE+ ++S D+ TA +L
Sbjct: 391 SILEAQTETGTPFVVYKDACNRKSNQKNLGVIKSSNLCCEIVEYSAPDE-TAVCNLASVA 449
Query: 118 LIELADFVSSG-SAKFTEPAISGMCKMCSLNLFRVF 152
L + G ++ + + + K+ + NL RV
Sbjct: 450 LPAFIETSEDGKTSTYNFKKLHEIAKVVTRNLNRVI 485
>pdb|3S8A|A Chain A, Structure Of Yeast Ribonucleotide Reductase R293a With
Dgtp
pdb|3S8C|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 R293a With
Amppnp And Cdp
Length = 888
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 61 SSIMAGVEAVEPHLSFKDVSN--TQKQNLFVSKL-NLCCEVSDFSDSDKVTAEQDLKRQT 117
S + A E P + +KD N + ++NL V K NLCCE+ ++S D+ TA +L
Sbjct: 391 SILEAQTETGTPFVVYKDACNRKSNQKNLGVIKSSNLCCEIVEYSAPDE-TAVCNLASVA 449
Query: 118 LIELADFVSSG-SAKFTEPAISGMCKMCSLNLFRVF 152
L + G ++ + + + K+ + NL RV
Sbjct: 450 LPAFIETSEDGKTSTYNFKKLHEIAKVVTRNLNRVI 485
>pdb|3HNC|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HNC|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HND|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HND|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HNE|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNE|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNF|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
pdb|3HNF|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
Length = 792
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 15/107 (14%)
Query: 63 IMAGVEAVEPHLSFKDVSN--TQKQNLFVSKL-NLCCEVSDFSDSDKVTAEQDLKRQTLI 119
I + E P++ +KD N + +QNL K NLC E+ +++ D+V + +
Sbjct: 394 IESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVA----VCNLASL 449
Query: 120 ELADFVSSGS-------AKFTEPAISGMCKMCSLNLFRVFPPKCRSN 159
L +V+S A+ T+ + + K+ +N + V P C SN
Sbjct: 450 ALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPV-PEACLSN 495
>pdb|2WGH|A Chain A, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg.
pdb|2WGH|B Chain B, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg
Length = 676
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 15/107 (14%)
Query: 63 IMAGVEAVEPHLSFKDVSN--TQKQNLFVSKL-NLCCEVSDFSDSDKVTAEQDLKRQTLI 119
I + E P++ +KD N + +QNL K NLC E+ +++ D+V + +
Sbjct: 321 IESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVA----VCNLASL 376
Query: 120 ELADFVSSGS-------AKFTEPAISGMCKMCSLNLFRVFPPKCRSN 159
L +V+S A+ T+ + + K+ +N + V P C SN
Sbjct: 377 ALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPV-PEACLSN 422
>pdb|4A15|A Chain A, Crystal Structure Of An Xpd Dna Complex
Length = 620
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 63 IMAGVEAVEPHLSFKDVSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLIELA 122
+MAG EA P+ +FK S+ K+ LF +L E D+ + + V + +K + A
Sbjct: 120 VMAGNEAACPYFNFKIRSDETKRFLF-DELPTAEEFYDYGERNNVCPYESMK--AALPDA 176
Query: 123 DFVSSGSAKFTEPAIS 138
D V + A F +++
Sbjct: 177 DIVIAPYAYFLNRSVA 192
>pdb|2VSF|A Chain A, Structure Of Xpd From Thermoplasma Acidophilum
Length = 602
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 63 IMAGVEAVEPHLSFKDVSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLIELA 122
+MAG EA P+ +FK S+ K+ LF +L E D+ + + V + +K + A
Sbjct: 102 VMAGNEAACPYFNFKIRSDETKRFLF-DELPTAEEFYDYGERNNVCPYESMK--AALPDA 158
Query: 123 DFVSSGSAKFTEPAIS 138
D V + A F +++
Sbjct: 159 DIVIAPYAYFLNRSVA 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,527,586
Number of Sequences: 62578
Number of extensions: 401279
Number of successful extensions: 945
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 932
Number of HSP's gapped (non-prelim): 15
length of query: 402
length of database: 14,973,337
effective HSP length: 101
effective length of query: 301
effective length of database: 8,652,959
effective search space: 2604540659
effective search space used: 2604540659
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)