Query 015699
Match_columns 402
No_of_seqs 155 out of 280
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 17:08:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015699.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015699hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jak_A Serine/threonine-protei 100.0 5E-120 2E-124 916.8 34.0 330 71-401 37-367 (392)
2 3fga_B Serine/threonine-protei 100.0 5E-118 2E-122 904.9 34.9 321 80-401 1-322 (403)
3 2npp_B PP2A, B subunit, serine 100.0 4E-119 1E-123 924.5 23.7 330 71-401 25-355 (449)
4 2qk1_A Protein STU2; STU2P, XM 94.7 0.66 2.3E-05 43.1 14.4 181 214-396 23-216 (249)
5 1ibr_B P95, importin beta-1 su 94.7 0.52 1.8E-05 45.5 14.0 172 209-395 3-198 (462)
6 2qk2_A LP04448P; mini spindles 94.6 0.74 2.5E-05 41.6 14.0 180 212-396 20-201 (242)
7 1qgr_A Protein (importin beta 86.9 12 0.00042 39.2 15.4 173 209-395 3-198 (876)
8 2km4_A Regulator of TY1 transp 83.4 3.2 0.00011 35.7 7.4 84 317-401 26-118 (142)
9 1u6g_C TIP120 protein, CAND1; 83.1 38 0.0013 37.7 17.8 244 111-391 20-275 (1230)
10 2bpt_A Importin beta-1 subunit 82.9 18 0.0006 37.9 14.3 180 207-392 411-619 (861)
11 1qgr_A Protein (importin beta 80.5 59 0.002 33.9 21.5 185 208-393 218-430 (876)
12 2jdq_A Importin alpha-1 subuni 80.5 17 0.00057 34.8 12.1 84 197-280 97-181 (450)
13 4fu3_A Regulation of nuclear P 79.9 5 0.00017 33.6 7.3 87 314-401 24-116 (135)
14 4fdd_A Transportin-1; heat rep 78.9 31 0.001 36.7 14.7 173 209-395 15-198 (852)
15 4hxt_A De novo protein OR329; 74.7 41 0.0014 29.0 14.5 190 196-396 33-237 (252)
16 1wa5_B Importin alpha subunit; 74.2 48 0.0016 33.0 13.9 192 197-395 163-365 (530)
17 2bpt_A Importin beta-1 subunit 72.5 95 0.0033 32.2 22.3 184 208-392 225-432 (861)
18 4db8_A Armadillo-repeat protei 66.7 65 0.0022 28.0 12.2 186 200-396 47-247 (252)
19 2vgl_B AP-2 complex subunit be 66.5 82 0.0028 32.2 13.9 174 207-396 353-527 (591)
20 1ibr_B P95, importin beta-1 su 66.1 90 0.0031 29.5 16.8 45 349-393 386-430 (462)
21 4b8j_A Importin subunit alpha- 61.8 1.1E+02 0.0038 30.1 13.5 106 197-303 150-256 (528)
22 4flb_A Regulation of nuclear P 60.9 17 0.00056 30.3 6.1 85 316-401 27-115 (132)
23 4fdd_A Transportin-1; heat rep 60.8 1.4E+02 0.0048 31.6 14.8 189 201-392 478-691 (852)
24 1sz9_A PCF11 protein; RNA poly 59.7 21 0.00073 30.7 6.8 90 309-399 23-115 (144)
25 1xqr_A HSPBP1 protein; armadil 59.4 1.2E+02 0.0041 28.6 15.5 99 178-280 56-156 (296)
26 1u6g_C TIP120 protein, CAND1; 59.1 96 0.0033 34.4 13.6 178 208-393 7-197 (1230)
27 2x19_B Importin-13; nuclear tr 50.6 1.6E+02 0.0056 31.4 13.4 149 210-397 689-842 (963)
28 2jdq_A Importin alpha-1 subuni 47.2 1.4E+02 0.0048 28.1 11.1 110 207-322 64-180 (450)
29 2x1g_F Cadmus; transport prote 47.1 2.4E+02 0.0081 30.3 14.0 182 176-362 541-764 (971)
30 4b8j_A Importin subunit alpha- 44.3 1.5E+02 0.0052 29.1 11.1 177 209-395 76-268 (528)
31 3m1i_C Exportin-1; heat repeat 43.8 1.4E+02 0.0046 32.9 11.6 178 204-395 13-219 (1049)
32 1w63_A Adapter-related protein 43.0 2.9E+02 0.01 28.3 14.2 172 208-396 386-572 (618)
33 3ibv_A Exportin-T; karyopherin 42.8 68 0.0023 35.6 9.0 122 270-395 64-217 (980)
34 4db8_A Armadillo-repeat protei 41.7 1.7E+02 0.0058 25.2 11.2 69 210-279 15-84 (252)
35 1oks_A RNA polymerase alpha su 39.1 22 0.00074 26.0 2.8 46 271-318 5-50 (56)
36 2qk2_A LP04448P; mini spindles 38.5 2E+02 0.0069 25.1 14.0 158 172-339 25-208 (242)
37 3bbz_A P protein, phosphoprote 37.6 31 0.0011 24.8 3.4 32 79-119 15-46 (49)
38 3ul1_B Importin subunit alpha- 36.5 3.3E+02 0.011 27.0 12.7 108 196-303 132-244 (510)
39 2x1g_F Cadmus; transport prote 34.7 3.9E+02 0.013 28.6 13.2 112 265-383 480-596 (971)
40 3d9j_A RNA-binding protein 16; 33.9 80 0.0028 26.9 6.2 82 317-400 30-121 (145)
41 1wa5_B Importin alpha subunit; 33.8 2.2E+02 0.0074 28.1 10.4 28 209-236 89-116 (530)
42 4db6_A Armadillo repeat protei 33.3 2.1E+02 0.0073 23.8 15.6 178 204-393 9-202 (210)
43 3gs3_A Symplekin, LD45768P; he 31.3 1.8E+02 0.0062 27.2 8.7 73 315-394 39-113 (257)
44 3ibv_A Exportin-T; karyopherin 30.6 76 0.0026 35.2 6.9 82 209-300 704-786 (980)
45 4ffb_C Protein STU2; tubulin f 29.1 3.2E+02 0.011 24.6 13.7 127 264-392 70-204 (278)
46 1xqr_A HSPBP1 protein; armadil 28.8 1.7E+02 0.0059 27.5 8.2 169 196-383 113-289 (296)
47 3tjz_B Coatomer subunit gamma; 27.6 3E+02 0.01 26.9 9.9 104 262-396 59-164 (355)
48 2x19_B Importin-13; nuclear tr 26.8 2.2E+02 0.0076 30.4 9.6 28 368-395 197-226 (963)
49 2of3_A ZYG-9; multifunctional 26.5 4E+02 0.014 24.9 14.7 177 202-395 45-231 (266)
50 3u0r_A Apoptosis inhibitor 5; 23.5 6.3E+02 0.022 26.2 17.0 73 310-382 239-323 (507)
51 3eiq_C Programmed cell death p 20.9 5.9E+02 0.02 24.9 15.7 78 162-241 31-122 (358)
52 4db6_A Armadillo repeat protei 20.4 3.1E+02 0.011 22.8 7.6 83 196-279 43-126 (210)
53 3tpo_A Importin subunit alpha- 20.3 6.3E+02 0.022 24.9 16.7 108 196-303 151-263 (529)
54 3gjx_A Exportin-1; transport, 20.1 3E+02 0.01 31.1 9.1 175 204-392 25-228 (1073)
No 1
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=100.00 E-value=4.7e-120 Score=916.78 Aligned_cols=330 Identities=49% Similarity=0.888 Sum_probs=306.5
Q ss_pred cCCCCCCCCChHHHHHHHHHHHhcCcccccc-cCCccChhhHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhHhhcc
Q 015699 71 EPHLSFKDVSNTQKQNLFVSKLNLCCEVSDF-SDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLF 149 (402)
Q Consensus 71 ~~lp~l~dv~~~e~~~Lf~~Kl~~C~~ifDF-sdp~~d~~~Ke~K~~tL~EL~~~v~~~~~~l~e~~~~~i~~Mi~~NIF 149 (402)
++||+|+|++++|+++||++||++||++||| +||.+|+++||+||+||+||++|++++++++||++++++++||++|||
T Consensus 37 ~~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~NiF 116 (392)
T 2jak_A 37 VVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMF 116 (392)
T ss_dssp -----CCCCC-CSCSHHHHHHHHHTTCCCCCSSCSSSSHHHHHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhC
Confidence 5999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHhcCCCChHHHhhhcCHHHHHHHHhhcCCCChHHHHHHHH
Q 015699 150 RVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKT 229 (402)
Q Consensus 150 R~lP~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~k~ak~~id~~Fi~~Ll~lf~S~DprERd~Lkt 229 (402)
|++||.+++.+..||+|||||+.|++|||||+||++|+||+++++++++.||+|||++||.+|+++|+||||||||+||+
T Consensus 117 R~lPp~~~~~~~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~Lkt 196 (392)
T 2jak_A 117 RTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKT 196 (392)
T ss_dssp SCCCC---------------CCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCCCCCCcccccCCccccccccccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHH
Confidence 99999888766689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHhHhhhcccCCcchHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCCCCCcccch
Q 015699 230 VLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYH 309 (402)
Q Consensus 230 iLhrIY~Kf~~~R~~IRk~i~nif~~fi~e~e~~nGIaeLLeIlgSIInGFa~PLKeEhk~fl~~vLlPLHk~~~l~~y~ 309 (402)
+||||||||+++|+|||++|+|+|++||||+++||||+|||||+||||||||+|||+||+.||.||||||||+++++.||
T Consensus 197 iLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~ 276 (392)
T 2jak_A 197 TLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYH 276 (392)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhCCCcHHHHH
Q 015699 310 QQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVYF 389 (402)
Q Consensus 310 ~qL~yci~qfieKDp~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~~ef~~i~~plf~~la~ci~S~hfqVAE 389 (402)
+||+||++||++|||+|+++|++||+||||+||++|||+||+||++||+.+++++|+++++|+|++||+|++|+||||||
T Consensus 277 ~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAE 356 (392)
T 2jak_A 277 PQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAE 356 (392)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCC
Q 015699 390 LFIMCMLINKRV 401 (402)
Q Consensus 390 rALm~~~~N~~~ 401 (402)
||| ++|+|+.+
T Consensus 357 rAL-~~wnNe~i 367 (392)
T 2jak_A 357 RAL-YYWNNEYI 367 (392)
T ss_dssp HHH-GGGGCHHH
T ss_pred HHH-HHhCcHHH
Confidence 995 89999864
No 2
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=100.00 E-value=4.7e-118 Score=904.88 Aligned_cols=321 Identities=49% Similarity=0.903 Sum_probs=315.8
Q ss_pred ChHHHHHHHHHHHhcCcccccc-cCCccChhhHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhHhhcccCCCCCCCC
Q 015699 80 SNTQKQNLFVSKLNLCCEVSDF-SDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPPKCRS 158 (402)
Q Consensus 80 ~~~e~~~Lf~~Kl~~C~~ifDF-sdp~~d~~~Ke~K~~tL~EL~~~v~~~~~~l~e~~~~~i~~Mi~~NIFR~lP~~~~~ 158 (402)
|++||++||++||++||++||| +||.+|+++|++||+||+||++|++++++++||++++++++||++||||++||.+++
T Consensus 1 ~~~e~~~lf~~Kl~~C~~ifDF~~d~~~d~~~Ke~Kr~~L~el~~~~~~~~~~lte~~~~~~~~Mi~~NiFR~lPp~~~~ 80 (403)
T 3fga_B 1 PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNP 80 (403)
T ss_dssp CCSHHHHHHHHHHHHTTCCCCSSSSTTTTHHHHHHHHHHHHHHHHHHHHSCSCCCTTHHHHHHHHHHHHHCCCCCCCSSC
T ss_pred ChhHHHHHHHHHHHHhCCccCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCC
Confidence 5789999999999999999999 899999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCCCCccchhhHHHHHHHHHHhcCCCChHHHhhhcCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhh
Q 015699 159 NGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKF 238 (402)
Q Consensus 159 ~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~k~ak~~id~~Fi~~Ll~lf~S~DprERd~LktiLhrIY~Kf 238 (402)
++.+||+|||||+.||+|||||+||++|+||++|+++|++.||+|||++||.+|+++|+||||||||+|||+||||||||
T Consensus 81 ~~~~~d~eedep~~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf 160 (403)
T 3fga_B 81 TGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKF 160 (403)
T ss_dssp CSTTCCGGGCCCCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred ccccCCccccccccccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhh
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhHhhhcccCCcchHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCCCCCcccchhhHHHHHHH
Q 015699 239 MAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQ 318 (402)
Q Consensus 239 ~~~R~~IRk~i~nif~~fi~e~e~~nGIaeLLeIlgSIInGFa~PLKeEhk~fl~~vLlPLHk~~~l~~y~~qL~yci~q 318 (402)
+++|+|||++|||+|++||||+++||||+|||||+||||||||+|||+||+.||.||||||||+++++.||+||+||++|
T Consensus 161 ~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~q 240 (403)
T 3fga_B 161 LGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQ 240 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHhhc
Q 015699 319 FIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVYFLFIMCMLIN 398 (402)
Q Consensus 319 fieKDp~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~~ef~~i~~plf~~la~ci~S~hfqVAErALm~~~~N 398 (402)
|++|||+|+++|++||+||||+|||+|||+||+||++||+.++|++|+++++|+|++||+|++|+||||||||| ++|+|
T Consensus 241 f~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL-~~wnN 319 (403)
T 3fga_B 241 FLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERAL-YYWNN 319 (403)
T ss_dssp HHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHH-GGGGC
T ss_pred HHHhCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH-HHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995 89999
Q ss_pred CCC
Q 015699 399 KRV 401 (402)
Q Consensus 399 ~~~ 401 (402)
+.+
T Consensus 320 e~i 322 (403)
T 3fga_B 320 EYI 322 (403)
T ss_dssp HHH
T ss_pred HHH
Confidence 854
No 3
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=100.00 E-value=3.9e-119 Score=924.51 Aligned_cols=330 Identities=49% Similarity=0.888 Sum_probs=312.4
Q ss_pred cCCCCCCCCChHHHHHHHHHHHhcCcccccc-cCCccChhhHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhHhhcc
Q 015699 71 EPHLSFKDVSNTQKQNLFVSKLNLCCEVSDF-SDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLF 149 (402)
Q Consensus 71 ~~lp~l~dv~~~e~~~Lf~~Kl~~C~~ifDF-sdp~~d~~~Ke~K~~tL~EL~~~v~~~~~~l~e~~~~~i~~Mi~~NIF 149 (402)
++||+|+||+++|+++||++||++||++||| +||.+|+++||+||+||+||+||++++++++||++++++++||++|||
T Consensus 25 ~~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~NiF 104 (449)
T 2npp_B 25 VVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMF 104 (449)
T ss_dssp -------------CCCCTTTHHHHHHHHHHHCCCCSSSCCCCCSHHHHHHHHHHHHHSSCCSCCCSSCCHHHHHHHHHHC
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhC
Confidence 5999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHhcCCCChHHHhhhcCHHHHHHHHhhcCCCChHHHHHHHH
Q 015699 150 RVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKT 229 (402)
Q Consensus 150 R~lP~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~k~ak~~id~~Fi~~Ll~lf~S~DprERd~Lkt 229 (402)
|++||.+++++..||+|||||+.||+|||||+||++|+||++|++||++.||+|||++||.+|+++|+||||||||+||+
T Consensus 105 R~lPp~~~~~~~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~Lkt 184 (449)
T 2npp_B 105 RTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKT 184 (449)
T ss_dssp CCCCCCSSCCSSSSCGGGCCCCCCTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHH
T ss_pred CCCCCCCCcccccCCCccccccccccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHH
Confidence 99999888776789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHhHhhhcccCCcchHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCCCCCcccch
Q 015699 230 VLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYH 309 (402)
Q Consensus 230 iLhrIY~Kf~~~R~~IRk~i~nif~~fi~e~e~~nGIaeLLeIlgSIInGFa~PLKeEhk~fl~~vLlPLHk~~~l~~y~ 309 (402)
+||||||||+++|+|||++|+|+|++||||+++||||+|||||+||||||||+|||+||+.||.||||||||+++++.||
T Consensus 185 iLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~ 264 (449)
T 2npp_B 185 TLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYH 264 (449)
T ss_dssp HHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhCCCcHHHHH
Q 015699 310 QQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVYF 389 (402)
Q Consensus 310 ~qL~yci~qfieKDp~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~~ef~~i~~plf~~la~ci~S~hfqVAE 389 (402)
+||+||++||++|||+|+++|++||+||||+|||+|||+||+||++||+.++|++|+++++|||++||+|++|+||||||
T Consensus 265 ~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAE 344 (449)
T 2npp_B 265 PQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAE 344 (449)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHH
T ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCC
Q 015699 390 LFIMCMLINKRV 401 (402)
Q Consensus 390 rALm~~~~N~~~ 401 (402)
||| ++|+|+.+
T Consensus 345 rAL-~~w~N~~i 355 (449)
T 2npp_B 345 RAL-YYWNNEYI 355 (449)
T ss_dssp HHH-GGGGCHHH
T ss_pred HHH-HHHCCHHH
Confidence 996 89999853
No 4
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=94.72 E-value=0.66 Score=43.12 Aligned_cols=181 Identities=8% Similarity=0.054 Sum_probs=121.2
Q ss_pred hhcCCCChHHHHHHHHHHHH-Hhhh---hhhhhHHHHHHHHHHHhHhhhcccCCcchHHHHHHHHHHHhccC-CCchHHH
Q 015699 214 DLFDSEDPRERDCLKTVLHR-IYGK---FMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFA-LPLKEEH 288 (402)
Q Consensus 214 ~lf~S~DprERd~LktiLhr-IY~K---f~~~R~~IRk~i~nif~~fi~e~e~~nGIaeLLeIlgSIInGFa-~PLKeEh 288 (402)
+.+.|.|.+||...-.-|.. +-.. ...+..-. ..+-+.+...+-.+....-+...+..+|.+.+|+. ..+...|
T Consensus 23 ~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~-~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y 101 (249)
T 2qk1_A 23 ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDY 101 (249)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 34478999999887777766 6532 22100000 01122333333222333335567999999999998 5664245
Q ss_pred HHHHHHHhhccCCCCCcccchhhHHHHHHHHHhcC-C----CcHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhcCCh-
Q 015699 289 KIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKD-P----KLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSM- 362 (402)
Q Consensus 289 k~fl~~vLlPLHk~~~l~~y~~qL~yci~qfieKD-p----~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~- 362 (402)
..-+.-.|+..++.+.- .=.....+++..+++.= | ...+.++.-|+..+-..|++=....+.-|..+++....
T Consensus 102 ~~~llp~ll~~l~dkk~-~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~ 180 (249)
T 2qk1_A 102 VSLVFTPLLDRTKEKKP-SVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG 180 (249)
T ss_dssp HHHHHHHHHHGGGCCCH-HHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc
Confidence 55556678888887653 33466788888888753 2 21446777777777666776677888899999988764
Q ss_pred -HHHHHHH-HHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 015699 363 -AEFQKIM-VPLFRRIGCCLNSSHYQVYFLFIMCML 396 (402)
Q Consensus 363 -~ef~~i~-~plf~~la~ci~S~hfqVAErALm~~~ 396 (402)
..|.+.+ ..+...+.+|++..+-.|=++|..|+.
T Consensus 181 ~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~ 216 (249)
T 2qk1_A 181 YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFA 216 (249)
T ss_dssp SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 8899998 899999999999999999888865543
No 5
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=94.68 E-value=0.52 Score=45.50 Aligned_cols=172 Identities=11% Similarity=0.097 Sum_probs=100.5
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhh-hhh-------------hhHHHHHHHHHHHhHhhhcccCCcchHHHHHHHH
Q 015699 209 IVRLLDLFDSEDPRERDCLKTVLHRIYGK-FMA-------------HRQFIRQAVCNIIYRFVFETERHNGIAELLEIFG 274 (402)
Q Consensus 209 i~~Ll~lf~S~DprERd~LktiLhrIY~K-f~~-------------~R~~IRk~i~nif~~fi~e~e~~nGIaeLLeIlg 274 (402)
+.+++..+.|+|+..|......|..+... ..+ ...-+|....-+|-+++..... .+-.+...
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~-~~~~~~~~--- 78 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDP-DIKAQYQQ--- 78 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSH-HHHHHHHH---
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccch-HHHHHHHh---
Confidence 45677778888998888888777664431 111 1122333333333333311000 00000000
Q ss_pred HHHhccCCCchHHHHHHHHHHhhccCCCCCcccchhhHHHHHHHHHhcC------CCcHHHHHHHhhccCCCC--CchhH
Q 015699 275 SIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKD------PKLATNAIKGLLKYWPVT--NSQKE 346 (402)
Q Consensus 275 SIInGFa~PLKeEhk~fl~~vLlPLHk~~~l~~y~~qL~yci~qfieKD------p~L~~~vi~~LLk~WP~t--ns~KE 346 (402)
-+ ..+.++.+..+...|+++.....-.. .+++.|+......+ |.+...++..+- -. +....
T Consensus 79 ----~~-~~l~~~~~~~ik~~ll~~l~~~~~~v--~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~----~~~~~~~~r 147 (462)
T 1ibr_B 79 ----RW-LAIDANARREVKNYVLQTLGTETYRP--SSASQCVAGIACAEIPVNQWPELIPQLVANVT----NPNSTEHMK 147 (462)
T ss_dssp ----HH-HTSCHHHHHHHHHHHHHHTTCCCSSS--CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHH----CTTCCHHHH
T ss_pred ----hh-hcCCHHHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHHHHhccccccHHHHHHHHHHhc----cCCCCHHHH
Confidence 01 23667788888888999887765544 88999998886543 334444444432 12 33333
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhCCC--cHHHHHHHHHHH
Q 015699 347 LMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSS--HYQVYFLFIMCM 395 (402)
Q Consensus 347 vlFL~EleeiLe~~~~~ef~~i~~plf~~la~ci~S~--hfqVAErALm~~ 395 (402)
..-+.-+..+.+...++.+......++..+..|+.++ +..|-.+|+-++
T Consensus 148 ~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l 198 (462)
T 1ibr_B 148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNAL 198 (462)
T ss_dssp HHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 3445666777766656666777788999999999998 777777776554
No 6
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=94.57 E-value=0.74 Score=41.60 Aligned_cols=180 Identities=11% Similarity=0.004 Sum_probs=115.3
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHhHhhhcccCCcchHHHHHHHHHHHhccCCCchHHHHH
Q 015699 212 LLDLFDSEDPRERDCLKTVLHRIYGKFMAH-RQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKI 290 (402)
Q Consensus 212 Ll~lf~S~DprERd~LktiLhrIY~Kf~~~-R~~IRk~i~nif~~fi~e~e~~nGIaeLLeIlgSIInGFa~PLKeEhk~ 290 (402)
+.+.++|.|.+||...-.-|..+-...... ..... .+-+.+...+..+....-....+..++.+.++....+.. |..
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~-~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~~~ 97 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYG-ALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-YAS 97 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-HHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-HHH
Confidence 556677999999988777777665442110 01111 222334443421223333445788888888877654534 444
Q ss_pred HHHHHhhccCCCCCcccchhhHHHHHHHHHhcCCCcHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhcCChH-HHHHHH
Q 015699 291 FLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMA-EFQKIM 369 (402)
Q Consensus 291 fl~~vLlPLHk~~~l~~y~~qL~yci~qfieKDp~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~~-ef~~i~ 369 (402)
-+...|+...+.+.- .-.+....++..+++.-+ ...++..++...--.|+.=...-+.-|..++....++ .+...+
T Consensus 98 ~ilp~ll~~l~d~~~-~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKP-NVVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp HHHHHHHHGGGCCCH-HHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred HHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence 446677777666543 334566777777776533 3566777777766566665667788888888887765 356777
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 015699 370 VPLFRRIGCCLNSSHYQVYFLFIMCML 396 (402)
Q Consensus 370 ~plf~~la~ci~S~hfqVAErALm~~~ 396 (402)
..+...+..|++..+..|=++|.-+++
T Consensus 175 ~~l~p~l~~~l~D~~~~VR~~A~~~l~ 201 (242)
T 2qk2_A 175 KLLTTSLVKTLNEPDPTVRDSSAEALG 201 (242)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 788889999999999998888865553
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=86.94 E-value=12 Score=39.20 Aligned_cols=173 Identities=8% Similarity=0.064 Sum_probs=100.4
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHhhhcccCCcchHHH-HHHHHHHHh---------
Q 015699 209 IVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAEL-LEIFGSIIS--------- 278 (402)
Q Consensus 209 i~~Ll~lf~S~DprERd~LktiLhrIY~Kf~~~R~~IRk~i~nif~~fi~e~e~~nGIaeL-LeIlgSIIn--------- 278 (402)
+.+++..+.|+|+..|......|..+... ..+-+...+-.++ -.......+-.+ ..+|...+.
T Consensus 3 l~~~L~~~~s~d~~~r~~A~~~L~~~~~~---~~~~~~~~L~~~l----~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~ 75 (876)
T 1qgr_A 3 LITILEKTVSPDRLELEAAQKFLERAAVE---NLPTFLVELSRVL----ANPGNSQVARVAAGLQIKNSLTSKDPDIKAQ 75 (876)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH----HCTTSCHHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhc---ChhhHHHHHHHHH----hCCCCCHHHHHHHHHHHHHhccccchHhHHH
Confidence 45677777889999998888888765432 1111111111222 111111112221 223333331
Q ss_pred ---ccCCCchHHHHHHHHHHhhccCCCCCcccchhhHHHHHHHHHhcC------CCcHHHHHHHhhccCCCC--CchhHH
Q 015699 279 ---GFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKD------PKLATNAIKGLLKYWPVT--NSQKEL 347 (402)
Q Consensus 279 ---GFa~PLKeEhk~fl~~vLlPLHk~~~l~~y~~qL~yci~qfieKD------p~L~~~vi~~LLk~WP~t--ns~KEv 347 (402)
.+ ..+.++.+..+...|+.......-.. .++.+|+......+ |.+...++..+- -. +..-..
T Consensus 76 ~~~~w-~~l~~~~~~~ik~~ll~~l~~~~~~~--~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~----~~~~~~~~r~ 148 (876)
T 1qgr_A 76 YQQRW-LAIDANARREVKNYVLHTLGTETYRP--SSASQCVAGIACAEIPVNQWPELIPQLVANVT----NPNSTEHMKE 148 (876)
T ss_dssp HHHHH-HTSCHHHHHHHHHHHHHHTTTCCSSS--CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHH----CTTCCHHHHH
T ss_pred HHhhh-ccCCHHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHHHhhCcccccHHHHHHHHHHHh----CCCCCHHHHH
Confidence 11 13557778888888888776655444 67888887765442 334444433332 11 222233
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhCCC--cHHHHHHHHHHH
Q 015699 348 MFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSS--HYQVYFLFIMCM 395 (402)
Q Consensus 348 lFL~EleeiLe~~~~~ef~~i~~plf~~la~ci~S~--hfqVAErALm~~ 395 (402)
.-|.-+..+++.+.++.|......++..+..++.++ +..|-..|+-++
T Consensus 149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l 198 (876)
T 1qgr_A 149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNAL 198 (876)
T ss_dssp HHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence 456777778877778888888889999999999887 677777776444
No 8
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=83.39 E-value=3.2 Score=35.69 Aligned_cols=84 Identities=12% Similarity=0.159 Sum_probs=61.3
Q ss_pred HHHHhcCCCcHHHHHHHhhccCCC--CCchhHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHHHHHhhCCCcHHH
Q 015699 317 VQFIDKDPKLATNAIKGLLKYWPV--TNSQKELMFISELEEVLEMTS-------MAEFQKIMVPLFRRIGCCLNSSHYQV 387 (402)
Q Consensus 317 ~qfieKDp~L~~~vi~~LLk~WP~--tns~KEvlFL~EleeiLe~~~-------~~ef~~i~~plf~~la~ci~S~hfqV 387 (402)
.+++-.+.+-+..++..+.++-=. +++.|.+.+|.-+.+|+..+- -..|.++++++|..+....++.+-+.
T Consensus 26 s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~~~F~~~L~~~~~~~~~~~~~~~~~k 105 (142)
T 2km4_A 26 SKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQDSFGKVAAEVLGRINQEFPRDLKKK 105 (142)
T ss_dssp HHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHTHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 334444444555555555555444 377899999999999997543 25799999999999998878888888
Q ss_pred HHHHHHHHhhcCCC
Q 015699 388 YFLFIMCMLINKRV 401 (402)
Q Consensus 388 AErALm~~~~N~~~ 401 (402)
.+|- +.+|...+|
T Consensus 106 v~rv-l~iWeer~v 118 (142)
T 2km4_A 106 LSRV-VNILKERNI 118 (142)
T ss_dssp HHHH-HHHHHHHTC
T ss_pred HHHH-HHHhhccCC
Confidence 9996 599987654
No 9
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=83.10 E-value=38 Score=37.69 Aligned_cols=244 Identities=12% Similarity=0.096 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhHhhcccCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHH
Q 015699 111 QDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFV 190 (402)
Q Consensus 111 Ke~K~~tL~EL~~~v~~~~~~l~e~~~~~i~~Mi~~NIFR~lP~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv 190 (402)
++++++++.+|.+.+......+++.....++..+- +.+. ++.|..-+.....+..++
T Consensus 20 ~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll----~~L~-------------------d~~~~vR~~A~~~L~~l~ 76 (1230)
T 1u6g_C 20 KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMIL----KLLE-------------------DKNGEVQNLAVKCLGPLV 76 (1230)
T ss_dssp HHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHH----HHTT-------------------CSSHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHH----HHhc-------------------CCCHHHHHHHHHHHHHHH
Confidence 57789999999999877655566655555555432 2221 234665566666666666
Q ss_pred hcCCCChHHHhhhcCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhhh------hHHHHHHHHHHHhHhhhcccCCc
Q 015699 191 SYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAH------RQFIRQAVCNIIYRFVFETERHN 264 (402)
Q Consensus 191 ~s~~~d~k~ak~~id~~Fi~~Ll~lf~S~DprERd~LktiLhrIY~Kf~~~------R~~IRk~i~nif~~fi~e~e~~n 264 (402)
.. ... +++ ..++..|+..+.+++++-|...-..|..|....... .......+-..+.+.+...+...
T Consensus 77 ~~--~~~----~~~-~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~ 149 (1230)
T 1u6g_C 77 SK--VKE----YQV-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVS 149 (1230)
T ss_dssp TT--SCH----HHH-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHH
T ss_pred Hh--CCH----HHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchH
Confidence 43 222 222 346677888888899988988777777776544332 11122233344444443223333
Q ss_pred chHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCCCCCcccchhhHHHHHHHHHhcCC-----CcHHHHHHHhhcc-C
Q 015699 265 GIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDP-----KLATNAIKGLLKY-W 338 (402)
Q Consensus 265 GIaeLLeIlgSIInGFa~PLKeEhk~fl~~vLlPLHk~~~l~~y~~qL~yci~qfieKDp-----~L~~~vi~~LLk~-W 338 (402)
-....+++++.+...+...+.+ +..-+...|+++...+.- .....-..|+..+++.-+ .+...++.+|.+- |
T Consensus 150 ~~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~~-~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~ 227 (1230)
T 1u6g_C 150 VQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRL-AVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDS 227 (1230)
T ss_dssp HHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSH-HHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCc
Confidence 4556889999888654433433 223345667777665442 345555667777765432 2455566665543 2
Q ss_pred CCCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHH
Q 015699 339 PVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVYFLF 391 (402)
Q Consensus 339 P~tns~KEvlFL~EleeiLe~~~~~ef~~i~~plf~~la~ci~S~hfqVAErA 391 (402)
+ ..-.+=+..|.+ +.+..+ ..|...+..++..+-+++..++-.|-+.|
T Consensus 228 ~-~~r~~a~~~l~~---l~~~~~-~~~~~~l~~l~~~ll~~l~d~~~~vR~~a 275 (1230)
T 1u6g_C 228 M-STTRTYIQCIAA---ISRQAG-HRIGEYLEKIIPLVVKFCNVDDDELREYC 275 (1230)
T ss_dssp S-CSCTTHHHHHHH---HHHHSS-GGGTTSCTTHHHHHHHHHSSCCTTTHHHH
T ss_pred h-hHHHHHHHHHHH---HHHHhH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 2 111122333444 444433 24554455566666666666665544444
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=82.86 E-value=18 Score=37.90 Aligned_cols=180 Identities=12% Similarity=0.049 Sum_probs=83.2
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhhh---hHHHHHHHHHHHhHhhhcccCCcchH-HHHHHHHHHHhccC-
Q 015699 207 LFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAH---RQFIRQAVCNIIYRFVFETERHNGIA-ELLEIFGSIISGFA- 281 (402)
Q Consensus 207 ~Fi~~Ll~lf~S~DprERd~LktiLhrIY~Kf~~~---R~~IRk~i~nif~~fi~e~e~~nGIa-eLLeIlgSIInGFa- 281 (402)
.++..|+..+.+++++-|......+.++-..+... ..++...+.. +.+.+.+. ..+. .....++.++.++.
T Consensus 411 ~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~-l~~~l~~~---~~v~~~a~~al~~l~~~~~~ 486 (861)
T 2bpt_A 411 QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQA-CLIGLQDH---PKVATNCSWTIINLVEQLAE 486 (861)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHH-HHHHHTSC---HHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHH-HHHHhccC---hHHHHHHHHHHHHHHHhccc
Confidence 35566777777777777777666666555433211 2233333322 22333211 1111 23445555555543
Q ss_pred ---CCchHHHHHHHHHHhhccCCCCCc-ccchhhHHHHHHHHHhcCCCc--------HHHHHHHhhccCCCC----C---
Q 015699 282 ---LPLKEEHKIFLCRALIPLHKPKSV-GIYHQQLTYCVVQFIDKDPKL--------ATNAIKGLLKYWPVT----N--- 342 (402)
Q Consensus 282 ---~PLKeEhk~fl~~vLlPLHk~~~l-~~y~~qL~yci~qfieKDp~L--------~~~vi~~LLk~WP~t----n--- 342 (402)
..+. .|..-+...|+++.+.... .........++...++..+.- ...++..+.+..|.. +
T Consensus 487 ~~~~~l~-~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~ 565 (861)
T 2bpt_A 487 ATPSPIY-NFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLED 565 (861)
T ss_dssp SSSCGGG-GGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHH
T ss_pred ccchhhH-HHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhh
Confidence 1122 1222234455555543211 122333444555555444432 122233333322221 0
Q ss_pred --chhH--HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhCCCcH-HHHHHHH
Q 015699 343 --SQKE--LMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHY-QVYFLFI 392 (402)
Q Consensus 343 --s~KE--vlFL~EleeiLe~~~~~ef~~i~~plf~~la~ci~S~hf-qVAErAL 392 (402)
...+ ...+.-|..++..++. ++......++..+...+++.+. .|-+.|+
T Consensus 566 ~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~ 619 (861)
T 2bpt_A 566 AQSLQELQSNILTVLAAVIRKSPS-SVEPVADMLMGLFFRLLEKKDSAFIEDDVF 619 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGG-GTGGGHHHHHHHHHHHHHSTTGGGTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHccCCCCcHHHHHH
Confidence 0111 1345555556665544 4566667777777777777665 6666664
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=80.53 E-value=59 Score=33.93 Aligned_cols=185 Identities=8% Similarity=0.024 Sum_probs=95.3
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHhHhhhcccCCcchHHHHHHHHHHHhccC-----
Q 015699 208 FIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMA-HRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFA----- 281 (402)
Q Consensus 208 Fi~~Ll~lf~S~DprERd~LktiLhrIY~Kf~~-~R~~IRk~i~nif~~fi~e~e~~nGIaeLLeIlgSIInGFa----- 281 (402)
++.-+...+.++|++.|.....+|.++...+.. .++++.+.+-..+..... +....-....++++..+.....
T Consensus 218 il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~al~~l~~l~~~~~~~~~~ 296 (876)
T 1qgr_A 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK-SDIDEVALQGIEFWSNVCDEEMDLAIE 296 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHHhHhhh
Confidence 455566677888999998888888777765533 345555222233333221 1111123345666666654310
Q ss_pred ------------CCchH---HHHHHHHHHhhccCCCC------CcccchhhHHHHHHHHHhcCC-CcHHHHHHHhhccCC
Q 015699 282 ------------LPLKE---EHKIFLCRALIPLHKPK------SVGIYHQQLTYCVVQFIDKDP-KLATNAIKGLLKYWP 339 (402)
Q Consensus 282 ------------~PLKe---Ehk~fl~~vLlPLHk~~------~l~~y~~qL~yci~qfieKDp-~L~~~vi~~LLk~WP 339 (402)
.+... .|..-+...++.+.... .-......-..|+....+..+ .....++..+....-
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~ 376 (876)
T 1qgr_A 297 ASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIK 376 (876)
T ss_dssp HHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTT
T ss_pred hccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHcc
Confidence 01101 11111222333333211 000111122334333332222 344555555554433
Q ss_pred CCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 015699 340 VTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVYFLFIM 393 (402)
Q Consensus 340 ~tns~KEvlFL~EleeiLe~~~~~ef~~i~~plf~~la~ci~S~hfqVAErALm 393 (402)
-.+....-.-+.-+..+.+.+.++.+......++..+-.+++++|..|-++|+.
T Consensus 377 ~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~ 430 (876)
T 1qgr_A 377 NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAW 430 (876)
T ss_dssp CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 333333334455667777777777777777888888999999999999888853
No 12
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=80.49 E-value=17 Score=34.78 Aligned_cols=84 Identities=11% Similarity=0.086 Sum_probs=55.7
Q ss_pred hHHHhhhcCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhhhhHHHH-HHHHHHHhHhhhcccCCcchHHHHHHHHH
Q 015699 197 VKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIR-QAVCNIIYRFVFETERHNGIAELLEIFGS 275 (402)
Q Consensus 197 ~k~ak~~id~~Fi~~Ll~lf~S~DprERd~LktiLhrIY~Kf~~~R~~IR-k~i~nif~~fi~e~e~~nGIaeLLeIlgS 275 (402)
+...+..++...+..|+.++.++|+.-|...-..|..+-......|..+. ..+-..+.+++.......-....++.++.
T Consensus 97 ~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~ 176 (450)
T 2jdq_A 97 SLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN 176 (450)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34445556667899999999999999999999999888765555555432 23345566666532222233446778888
Q ss_pred HHhcc
Q 015699 276 IISGF 280 (402)
Q Consensus 276 IInGF 280 (402)
+..+-
T Consensus 177 l~~~~ 181 (450)
T 2jdq_A 177 LCRGK 181 (450)
T ss_dssp HHCCS
T ss_pred HhCCC
Confidence 77654
No 13
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=79.94 E-value=5 Score=33.58 Aligned_cols=87 Identities=13% Similarity=0.182 Sum_probs=66.0
Q ss_pred HHHHHHHhcCCCcHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHHHHHhhCCCcHHH
Q 015699 314 YCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTS------MAEFQKIMVPLFRRIGCCLNSSHYQV 387 (402)
Q Consensus 314 yci~qfieKDp~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~------~~ef~~i~~plf~~la~ci~S~hfqV 387 (402)
.=+++++-.+.+-+..++..+.++=-.+.+.+.+.+|.-+.+|+..+. -..|.+.+.++|..+.+..+..+-+.
T Consensus 24 ~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~~f~~~l~~~~~~~~~~~~~~~k~k 103 (135)
T 4fu3_A 24 QTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKP 103 (135)
T ss_dssp HHHHHHHHHTGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHHHHHTTHHHHHHHHHHHHHTTSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 334555555566677777777776667777888999999999986542 25689999999999998888888888
Q ss_pred HHHHHHHHhhcCCC
Q 015699 388 YFLFIMCMLINKRV 401 (402)
Q Consensus 388 AErALm~~~~N~~~ 401 (402)
..|- +.+|...+|
T Consensus 104 l~kl-l~iW~~r~v 116 (135)
T 4fu3_A 104 LERL-LNIWQERSV 116 (135)
T ss_dssp HHHH-HHHHHHTTS
T ss_pred HHHH-HHHhcCCCC
Confidence 8886 599987654
No 14
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=78.93 E-value=31 Score=36.73 Aligned_cols=173 Identities=10% Similarity=0.079 Sum_probs=94.2
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHhhhcccCCcchHH-HHHHHHHHHhccCCCchHH
Q 015699 209 IVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAE-LLEIFGSIISGFALPLKEE 287 (402)
Q Consensus 209 i~~Ll~lf~S~DprERd~LktiLhrIY~Kf~~~R~~IRk~i~nif~~fi~e~e~~nGIae-LLeIlgSIInGFa~PLKeE 287 (402)
+.+++....|+|+..|......|..++. .+-.-.....++... +.....+-. ..-.|...|+..-..+.++
T Consensus 15 l~~~l~~~~s~d~~~r~~Ae~~L~~~~~-----~p~~~~~l~~il~~~---~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~ 86 (852)
T 4fdd_A 15 ILQLLKESQSPDTTIQRTVQQKLEQLNQ-----YPDFNNYLIFVLTKL---KSEDEPTRSLSGLILKNNVKAHFQNFPNG 86 (852)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTT-----SHHHHHHHHHHHHTC---TTSCHHHHHHHHHHHHHHTTTSGGGCCHH
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHhcc---CCCChHHHHHHHHHHHHHHHHccCCCCHH
Confidence 4556666678999999999998876643 111111111222110 111111111 1223333443322357788
Q ss_pred HHHHHHHHhhccCCCCCcccchhhHHHHHHHHHhcC-----CCcHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhcCCh
Q 015699 288 HKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKD-----PKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSM 362 (402)
Q Consensus 288 hk~fl~~vLlPLHk~~~l~~y~~qL~yci~qfieKD-----p~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~ 362 (402)
.+..+...|+++...+. ..-..+++.|+......| |.|...++..+ --.+..-.-.-+.-+..+++...+
T Consensus 87 ~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l----~~~~~~~r~~al~~L~~i~~~~~~ 161 (852)
T 4fdd_A 87 VTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQNWPDLLPKLCSLL----DSEDYNTCEGAFGALQKICEDSAE 161 (852)
T ss_dssp HHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHH----SCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999877543 355678999999888766 33333333332 222322222334444555554433
Q ss_pred HHHH-----HHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 015699 363 AEFQ-----KIMVPLFRRIGCCLNSSHYQVYFLFIMCM 395 (402)
Q Consensus 363 ~ef~-----~i~~plf~~la~ci~S~hfqVAErALm~~ 395 (402)
. +. .....++..+.+++.+++..|-..|+-++
T Consensus 162 ~-~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL 198 (852)
T 4fdd_A 162 I-LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACV 198 (852)
T ss_dssp H-HHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHH
T ss_pred H-hchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 2 22 12345566677788899999888776444
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=74.68 E-value=41 Score=28.99 Aligned_cols=190 Identities=14% Similarity=0.076 Sum_probs=100.0
Q ss_pred ChHHHhhhcCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhhhhHHHH-HHHHHHHhHhhhcccCCcchHHHHHHHH
Q 015699 196 DVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIR-QAVCNIIYRFVFETERHNGIAELLEIFG 274 (402)
Q Consensus 196 d~k~ak~~id~~Fi~~Ll~lf~S~DprERd~LktiLhrIY~Kf~~~R~~IR-k~i~nif~~fi~e~e~~nGIaeLLeIlg 274 (402)
++...+..++...+..|+.++.++|+.-|...-..|..+-..-...|..+. .-.-..+.+.+... ...-....+..++
T Consensus 33 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~ 111 (252)
T 4hxt_A 33 PASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALA 111 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-SHHHHHHHHHHHH
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 344566667778899999999999999999999999887765444444443 22345566666432 2222333566666
Q ss_pred HHHhccCCCchHHHHHH-----HHHHhhccCCCCCcccchhhHHHHHHHHHhcCCCc--------HHHHHHHhhccCCCC
Q 015699 275 SIISGFALPLKEEHKIF-----LCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKL--------ATNAIKGLLKYWPVT 341 (402)
Q Consensus 275 SIInGFa~PLKeEhk~f-----l~~vLlPLHk~~~l~~y~~qL~yci~qfieKDp~L--------~~~vi~~LLk~WP~t 341 (402)
.+..+. ++.+.. ....|+.+.+...- .-...-..|+......++.. +-+.+-.+++ ..
T Consensus 112 ~l~~~~-----~~~~~~~~~~~~i~~L~~~l~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---~~ 182 (252)
T 4hxt_A 112 NIASGP-----DEAIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---ST 182 (252)
T ss_dssp HHTTSC-----HHHHHHHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---CS
T ss_pred HHHcCC-----HHHHHHHHHCCCHHHHHHHHcCCCH-HHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHC---CC
Confidence 665432 222222 13456666665442 22333444444444333322 1222223332 12
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHH-HHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 015699 342 NSQKELMFISELEEVLEMTSMAEFQKIM-VPLFRRIGCCLNSSHYQVYFLFIMCML 396 (402)
Q Consensus 342 ns~KEvlFL~EleeiLe~~~~~ef~~i~-~plf~~la~ci~S~hfqVAErALm~~~ 396 (402)
+..=...=+.-|..+.. ..++.-+.+. ..+...|.+.+.+.+..|.+.|+.+++
T Consensus 183 ~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 237 (252)
T 4hxt_A 183 DSEVQKEAARALANIAS-GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALE 237 (252)
T ss_dssp CHHHHHHHHHHHHHHTT-SBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 21111111222333322 1233222221 235677888889999999999875443
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=74.20 E-value=48 Score=32.98 Aligned_cols=192 Identities=9% Similarity=0.015 Sum_probs=99.4
Q ss_pred hHHHhhhcCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhhhhHHHH-HHHHHHHhHhhhcccCCcchHHHHHHHHH
Q 015699 197 VKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIR-QAVCNIIYRFVFETERHNGIAELLEIFGS 275 (402)
Q Consensus 197 ~k~ak~~id~~Fi~~Ll~lf~S~DprERd~LktiLhrIY~Kf~~~R~~IR-k~i~nif~~fi~e~e~~nGIaeLLeIlgS 275 (402)
+...+..++...+..|+.++.++|+.-|...-..|..|-+.-...|..+. ..+-..+.+.+.. ....-....++.|+.
T Consensus 163 ~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 163 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSN 241 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHH
Confidence 33444445556778888889899999999999999888765444555432 2233445555543 222223446778888
Q ss_pred HHhccCCCchHHHHHHHHHHhhccCCCCCcccchhhHHHHHHHHHhcCC---------CcHHHHHHHhhccCCCCCchhH
Q 015699 276 IISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDP---------KLATNAIKGLLKYWPVTNSQKE 346 (402)
Q Consensus 276 IInGFa~PLKeEhk~fl~~vLlPLHk~~~l~~y~~qL~yci~qfieKDp---------~L~~~vi~~LLk~WP~tns~KE 346 (402)
+..+-..........-....|+.|.+...- .-......++......++ .+...++.. +++ .+..-.
T Consensus 242 L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~l-L~~---~~~~v~ 316 (530)
T 1wa5_B 242 LCRGKKPQPDWSVVSQALPTLAKLIYSMDT-ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVEL-LSH---ESTLVQ 316 (530)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHHTTCCCH-HHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHG-GGC---SCHHHH
T ss_pred HhCCCCCCCcHHHHHhHHHHHHHHHcCCCH-HHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHH-HCC---CChhhH
Confidence 777652222333333345666677665431 112223334444443332 333333333 322 121111
Q ss_pred HHHHHHHHHHHhcCChHHHHHHH-HHHHHHHHHhhCCCcHHHHHHHHHHH
Q 015699 347 LMFISELEEVLEMTSMAEFQKIM-VPLFRRIGCCLNSSHYQVYFLFIMCM 395 (402)
Q Consensus 347 vlFL~EleeiLe~~~~~ef~~i~-~plf~~la~ci~S~hfqVAErALm~~ 395 (402)
..-+.-|..+... .+...+.+. ..+...|..++.+++..|-+.|+.++
T Consensus 317 ~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL 365 (530)
T 1wa5_B 317 TPALRAVGNIVTG-NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI 365 (530)
T ss_dssp HHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1112233333221 222222222 24566777888888888888886543
No 17
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=72.50 E-value=95 Score=32.25 Aligned_cols=184 Identities=10% Similarity=0.071 Sum_probs=98.0
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHhHhhhcccCCcchHHHHHHHHHHHhccC-----
Q 015699 208 FIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMA-HRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFA----- 281 (402)
Q Consensus 208 Fi~~Ll~lf~S~DprERd~LktiLhrIY~Kf~~-~R~~IRk~i~nif~~fi~e~e~~nGIaeLLeIlgSIInGFa----- 281 (402)
++..|...+.++|++.|...-.+|.++...+.. .++++.+.+-..+...+.. ....-....+++++.+.....
T Consensus 225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~ 303 (861)
T 2bpt_A 225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKS-PNDKVASMTVEFWSTICEEEIDIAYE 303 (861)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 445566677899999999888888888776643 3445553333444443332 222223446777777765420
Q ss_pred ------CC-----chHHHHHHHHHHhhccCCCCCc------ccchhhHHHHHHHHHhcCC-CcHHHHHHHhhccCCCCCc
Q 015699 282 ------LP-----LKEEHKIFLCRALIPLHKPKSV------GIYHQQLTYCVVQFIDKDP-KLATNAIKGLLKYWPVTNS 343 (402)
Q Consensus 282 ------~P-----LKeEhk~fl~~vLlPLHk~~~l------~~y~~qL~yci~qfieKDp-~L~~~vi~~LLk~WP~tns 343 (402)
.| .-..+...+..+++...+...- ......-..|+..+...-+ .....++..+...---.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~ 383 (861)
T 2bpt_A 304 LAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNW 383 (861)
T ss_dssp HHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSH
T ss_pred hhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCCh
Confidence 00 0011112223344444332110 0111122233333332222 2334444444332212222
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 015699 344 QKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVYFLFI 392 (402)
Q Consensus 344 ~KEvlFL~EleeiLe~~~~~ef~~i~~plf~~la~ci~S~hfqVAErAL 392 (402)
.....-+.-+..+.+.+.++.+...+..+...+..++.++|..|-++|+
T Consensus 384 ~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~ 432 (861)
T 2bpt_A 384 RNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTA 432 (861)
T ss_dssp HHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 2223334456677777777888888888999999999999999988874
No 18
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=66.72 E-value=65 Score=28.04 Aligned_cols=186 Identities=12% Similarity=0.049 Sum_probs=98.8
Q ss_pred HhhhcCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhhhhHHHHH-HHHHHHhHhhhcccCCcchHHHHHHHHHHHh
Q 015699 200 AKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQ-AVCNIIYRFVFETERHNGIAELLEIFGSIIS 278 (402)
Q Consensus 200 ak~~id~~Fi~~Ll~lf~S~DprERd~LktiLhrIY~Kf~~~R~~IRk-~i~nif~~fi~e~e~~nGIaeLLeIlgSIIn 278 (402)
.+..++...+..|+.++.++|+.-|...-.+|..+-......|..+.+ -.-..+.+.+... ...-....+..++.+..
T Consensus 47 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~ 125 (252)
T 4db8_A 47 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIAS 125 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhc
Confidence 345566678889999999999999999999998877644455554433 2345566666442 22223445777777755
Q ss_pred ccCCCchHHHHHH----HHHHhhccCCCCCcccchhhHHHHHHHHHhcC---------CCcHHHHHHHhhccCCCCCchh
Q 015699 279 GFALPLKEEHKIF----LCRALIPLHKPKSVGIYHQQLTYCVVQFIDKD---------PKLATNAIKGLLKYWPVTNSQK 345 (402)
Q Consensus 279 GFa~PLKeEhk~f----l~~vLlPLHk~~~l~~y~~qL~yci~qfieKD---------p~L~~~vi~~LLk~WP~tns~K 345 (402)
+.. .+ ...+ ....|+.+.+.... .-...-..++......+ ......+++ +++. + +..=
T Consensus 126 ~~~--~~--~~~~~~~~~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~-~--~~~v 196 (252)
T 4db8_A 126 GGN--EQ--IQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASGGNEQIQAVIDAGALPALVQ-LLSS-P--NEQI 196 (252)
T ss_dssp SCH--HH--HHHHHHTTHHHHHHHGGGCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHH-GGGC-S--SHHH
T ss_pred CCc--hH--HHHHHHCCCHHHHHHHHhCCCH-HHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHH-HHCC-C--CHHH
Confidence 431 11 0112 23566666655422 11222333444333333 233333333 3332 1 1111
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHH-HHHHHHHHhhCCCcHHHHHHHHHHHh
Q 015699 346 ELMFISELEEVLEMTSMAEFQKIMV-PLFRRIGCCLNSSHYQVYFLFIMCML 396 (402)
Q Consensus 346 EvlFL~EleeiLe~~~~~ef~~i~~-plf~~la~ci~S~hfqVAErALm~~~ 396 (402)
...-+.-|..+.. -+++..+.+.. -....|.+++.+.+..|.+.|+.+++
T Consensus 197 ~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~ 247 (252)
T 4db8_A 197 LQEALWALSNIAS-GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247 (252)
T ss_dssp HHHHHHHHHHHTT-SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHH
T ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 1111222333321 23443333333 26677888889999999999975443
No 19
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=66.51 E-value=82 Score=32.23 Aligned_cols=174 Identities=10% Similarity=0.094 Sum_probs=104.5
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHhhhcccCCcchHHHHHHHHHHHhccCCCchH
Q 015699 207 LFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKE 286 (402)
Q Consensus 207 ~Fi~~Ll~lf~S~DprERd~LktiLhrIY~Kf~~~R~~IRk~i~nif~~fi~e~e~~nGIaeLLeIlgSIInGFa~PLKe 286 (402)
..+..|.+.+.+.|..-|..+-.-++++-.+|...-.++ -+.+.+++... .-.-..|.+..++.|+.++.. +++
T Consensus 353 ~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~----v~~Ll~ll~~~-~~~v~~e~i~~l~~ii~~~p~-~~~ 426 (591)
T 2vgl_B 353 QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERC----VSTLLDLIQTK-VNYVVQEAIVVIRDIFRKYPN-KYE 426 (591)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHH----HHHHHHHHHTC-CHHHHHHHHHHHHHHHHHSCS-SCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHH----HHHHHHHHccc-chHHHHHHHHHHHHHHHHCcc-hHH
Confidence 467778888888899989888888888887875433332 24555555322 222356677788888887632 222
Q ss_pred HHHHHHHHHhhccCCCCCcccchhhHHHHHHHHHhcCCCcHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhcCChHHHH
Q 015699 287 EHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQ 366 (402)
Q Consensus 287 Ehk~fl~~vLlPLHk~~~l~~y~~qL~yci~qfieKDp~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~~ef~ 366 (402)
.-...+...+ ..-....-.....+++-+|.+.-+. ...+++.+++.+...++.=+...|.-+..+....+. +.+
T Consensus 427 ~~v~~L~~~l----~~~~~~~~~~~~~wilGey~~~~~~-~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~-~~~ 500 (591)
T 2vgl_B 427 SIIATLCENL----DSLDEPDARAAMIWIVGEYAERIDN-ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPS-ETQ 500 (591)
T ss_dssp TTHHHHHHTT----TTCCSHHHHHHHHHHHHTTCTTCTT-HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCS-TTH
T ss_pred HHHHHHHHHH----HhccCHHHHHHHHHHHHcccccccC-HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCch-HHH
Confidence 2222222222 1111112234556666666554433 678999999988876666566677777777766543 222
Q ss_pred HHHHHHHHHHHHhh-CCCcHHHHHHHHHHHh
Q 015699 367 KIMVPLFRRIGCCL-NSSHYQVYFLFIMCML 396 (402)
Q Consensus 367 ~i~~plf~~la~ci-~S~hfqVAErALm~~~ 396 (402)
..+..+ +..|. +|.+..|=+||.+ +|
T Consensus 501 ~~i~~l---l~~~~~d~~d~evrdRA~~-y~ 527 (591)
T 2vgl_B 501 ELVQQV---LSLATQDSDNPDLRDRGYI-YW 527 (591)
T ss_dssp HHHHHH---HHHHHTTCCCHHHHHHHHH-HH
T ss_pred HHHHHH---HHHhhhcCCChHHHHHHHH-HH
Confidence 233333 34554 5789999999964 44
No 20
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=66.09 E-value=90 Score=29.48 Aligned_cols=45 Identities=7% Similarity=0.019 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 015699 349 FISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVYFLFIM 393 (402)
Q Consensus 349 FL~EleeiLe~~~~~ef~~i~~plf~~la~ci~S~hfqVAErALm 393 (402)
-+.-|..+.+.+.++.+...+..++..+..+++++|..|-.+|+.
T Consensus 386 al~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~ 430 (462)
T 1ibr_B 386 AVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAW 430 (462)
T ss_dssp HHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 344555566655555455555677888899999999999888853
No 21
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=61.83 E-value=1.1e+02 Score=30.10 Aligned_cols=106 Identities=15% Similarity=0.084 Sum_probs=65.4
Q ss_pred hHHHhhhcCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhhhhHHHHH-HHHHHHhHhhhcccCCcchHHHHHHHHH
Q 015699 197 VKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQ-AVCNIIYRFVFETERHNGIAELLEIFGS 275 (402)
Q Consensus 197 ~k~ak~~id~~Fi~~Ll~lf~S~DprERd~LktiLhrIY~Kf~~~R~~IRk-~i~nif~~fi~e~e~~nGIaeLLeIlgS 275 (402)
+......++...+..|+.++.++|+.-|...-..|..|-+.-...|..+.. -+-..+.+.+.......-.....+.|+.
T Consensus 150 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~ 229 (528)
T 4b8j_A 150 SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN 229 (528)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 444555566678889999999999999999999998887655555555443 1223455555333333334556777887
Q ss_pred HHhccCCCchHHHHHHHHHHhhccCCCC
Q 015699 276 IISGFALPLKEEHKIFLCRALIPLHKPK 303 (402)
Q Consensus 276 IInGFa~PLKeEhk~fl~~vLlPLHk~~ 303 (402)
+..+...+-. ....-....|+.|....
T Consensus 230 L~~~~~~~~~-~~~~~~l~~L~~lL~~~ 256 (528)
T 4b8j_A 230 FCRGKPQPSF-EQTRPALPALARLIHSN 256 (528)
T ss_dssp HHCSSSCCCH-HHHTTHHHHHHHHTTCC
T ss_pred HHcCCCCCcH-HHHHHHHHHHHHHHCCC
Confidence 7776533322 22223345666666553
No 22
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=60.91 E-value=17 Score=30.30 Aligned_cols=85 Identities=9% Similarity=0.123 Sum_probs=55.0
Q ss_pred HHHHHhcCCCcHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHhh-CCCcHHHHHHH
Q 015699 316 VVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTS---MAEFQKIMVPLFRRIGCCL-NSSHYQVYFLF 391 (402)
Q Consensus 316 i~qfieKDp~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~---~~ef~~i~~plf~~la~ci-~S~hfqVAErA 391 (402)
+++++-.+.+-+..++..+.++=-.+.+.+.+-+|.-+.+|+..+. ...|.+...+.+..+-..+ +..+-+-..|
T Consensus 27 ~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~~~~~~~~~~~~kl~~- 105 (132)
T 4flb_A 27 LSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSKSVER- 105 (132)
T ss_dssp HHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHHHHTTCSTTTHHHHHH-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-
Confidence 3455555566677777777777777888899999999999997652 2345444444444444444 3345555566
Q ss_pred HHHHhhcCCC
Q 015699 392 IMCMLINKRV 401 (402)
Q Consensus 392 Lm~~~~N~~~ 401 (402)
++.+|...+|
T Consensus 106 ll~iW~~r~v 115 (132)
T 4flb_A 106 IFKIWEDRNV 115 (132)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHhccCCC
Confidence 4699986544
No 23
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=60.76 E-value=1.4e+02 Score=31.57 Aligned_cols=189 Identities=11% Similarity=0.124 Sum_probs=95.6
Q ss_pred hhhcCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhh---hhhhhHHHHHHHHHHHhHhhhcccCCcchHHHHHHHHHHH
Q 015699 201 KKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGK---FMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSII 277 (402)
Q Consensus 201 k~~id~~Fi~~Ll~lf~S~DprERd~LktiLhrIY~K---f~~~R~~IRk~i~nif~~fi~e~e~~nGIaeLLeIlgSII 277 (402)
.+|+ ...+..|+..++..+.+....+.+.+..|... -.....++...+.-++..+-.-.+....+..+++.++.|.
T Consensus 478 ~~~l-~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~ 556 (852)
T 4fdd_A 478 VPYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVA 556 (852)
T ss_dssp GGGH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHH
T ss_pred HhHH-HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 3454 46677788888777777766666666555422 1222335554444333222111112223445788888877
Q ss_pred hccCCCchHHHHHHHHHHhhccCC------------CCCc----ccchh---hHHHHHHHHHhcCCC-c--HHHHHHHhh
Q 015699 278 SGFALPLKEEHKIFLCRALIPLHK------------PKSV----GIYHQ---QLTYCVVQFIDKDPK-L--ATNAIKGLL 335 (402)
Q Consensus 278 nGFa~PLKeEhk~fl~~vLlPLHk------------~~~l----~~y~~---qL~yci~qfieKDp~-L--~~~vi~~LL 335 (402)
......+.+--...+ ..++.+.+ +... ..+.. .+...+.+-+..+-. + ...++..++
T Consensus 557 ~~~g~~~~~~~~~i~-~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~ 635 (852)
T 4fdd_A 557 TALQSGFLPYCEPVY-QRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMY 635 (852)
T ss_dssp HHHGGGGHHHHHHHH-HHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHH
T ss_pred HHHhHhHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHH
Confidence 754332222111111 11111111 0011 01111 112222333332211 0 024566677
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 015699 336 KYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVYFLFI 392 (402)
Q Consensus 336 k~WP~tns~KEvlFL~EleeiLe~~~~~ef~~i~~plf~~la~ci~S~hfqVAErAL 392 (402)
..|.-.++.=......-+.++...+. ++|.+.+..+...+.+.++...+.|...|+
T Consensus 636 ~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~ 691 (852)
T 4fdd_A 636 QCMQDKMPEVRQSSFALLGDLTKACF-QHVKPCIADFMPILGTNLNPEFISVCNNAT 691 (852)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHHHHTCCTTSHHHHHHHH
T ss_pred HHhCCCChhHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHcCccchHHHHHHH
Confidence 77754444434455667777776664 678888888888899999888888866664
No 24
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=59.73 E-value=21 Score=30.65 Aligned_cols=90 Identities=8% Similarity=0.143 Sum_probs=68.5
Q ss_pred hhhHHHHHHHHHhcCCCcHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHhhCCCcH
Q 015699 309 HQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSM---AEFQKIMVPLFRRIGCCLNSSHY 385 (402)
Q Consensus 309 ~~qL~yci~qfieKDp~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~---~ef~~i~~plf~~la~ci~S~hf 385 (402)
.++...-++.++..+..-+..++..+.+|=-.+++.+-+.+|.-+..|+-.+.. ..|.+.+.++|...-.+++...-
T Consensus 23 Sk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r 102 (144)
T 1sz9_A 23 SRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTR 102 (144)
T ss_dssp CHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 344455567777777778888888888887789999999999999999987644 56888999999998887654444
Q ss_pred HHHHHHHHHHhhcC
Q 015699 386 QVYFLFIMCMLINK 399 (402)
Q Consensus 386 qVAErALm~~~~N~ 399 (402)
+--.| |+..|..-
T Consensus 103 ~k~~r-L~~~W~~~ 115 (144)
T 1sz9_A 103 TKLIN-MFKLWLNP 115 (144)
T ss_dssp HHHHH-HHHHHTSG
T ss_pred HHHHH-HHHHHhCc
Confidence 44445 56889754
No 25
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=59.35 E-value=1.2e+02 Score=28.61 Aligned_cols=99 Identities=8% Similarity=0.024 Sum_probs=64.2
Q ss_pred hhhHHHHHHHHHHhcCCCChHHHhhhcCHHHHHHHHh-hcCCCChHHHHHHHHHHHHHhhhhhhhhHHHHH-HHHHHHhH
Q 015699 178 HLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLD-LFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQ-AVCNIIYR 255 (402)
Q Consensus 178 HLqlVYeillrfv~s~~~d~k~ak~~id~~Fi~~Ll~-lf~S~DprERd~LktiLhrIY~Kf~~~R~~IRk-~i~nif~~ 255 (402)
|-...-+.|..++.+ ...+..+....-+..|+. ++.|+++.=|...-.+|-.|-+.-...|..+.+ -.-..|.+
T Consensus 56 ~k~~Al~~L~~lv~~----~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 56 EREGALELLADLCEN----MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHTS----HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhC----hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 445566777778864 334566655566788999 999999999999999998887766555554432 12234445
Q ss_pred hhhcccCCcchHHHHHHHHHHHhcc
Q 015699 256 FVFETERHNGIAELLEIFGSIISGF 280 (402)
Q Consensus 256 fi~e~e~~nGIaeLLeIlgSIInGF 280 (402)
.+..+....-....++.+++++.|+
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~ 156 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQ 156 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCC
Confidence 5543222233445677777777766
No 26
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=59.15 E-value=96 Score=34.44 Aligned_cols=178 Identities=13% Similarity=0.098 Sum_probs=82.4
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHhHhhhcccCCcchHH-HHHHHHHHHhccCCCch
Q 015699 208 FIVRLLDLFDSEDPRERDCLKTVLHRIYGKF-MAHRQFIRQAVCNIIYRFVFETERHNGIAE-LLEIFGSIISGFALPLK 285 (402)
Q Consensus 208 Fi~~Ll~lf~S~DprERd~LktiLhrIY~Kf-~~~R~~IRk~i~nif~~fi~e~e~~nGIae-LLeIlgSIInGFa~PLK 285 (402)
-+..|++.+.|+|+..|.....-|...+.+- ....+...+.+-..+.+.+.. ....+-. ....++.+..+..
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d--~~~~vR~~A~~~L~~l~~~~~---- 80 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED--KNGEVQNLAVKCLGPLVSKVK---- 80 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHTTSC----
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhCC----
Confidence 3567888889999999987655554443221 111111111222223333321 1112222 3555666666543
Q ss_pred HHHHHHHHHHhhccCCCCCcccchhhHHHHHHHHHhcCCC----------cHHHHHHHhhccCC-CCCchhHHHHHHHHH
Q 015699 286 EEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPK----------LATNAIKGLLKYWP-VTNSQKELMFISELE 354 (402)
Q Consensus 286 eEhk~fl~~vLlPLHk~~~l~~y~~qL~yci~qfieKDp~----------L~~~vi~~LLk~WP-~tns~KEvlFL~Ele 354 (402)
+++...+...|+.......-.. ...-..|+.++.+.-+. ....++..|++.=- ..+.....-=+.-+.
T Consensus 81 ~~~~~~i~~~Ll~~l~d~~~~v-R~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 81 EYQVETIVDTLCTNMLSDKEQL-RDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMA 159 (1230)
T ss_dssp HHHHHHHHHHHHHHTTCSSSHH-HHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHH-HHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 2444445555665544433222 23345566666543322 12233332222111 111122222233444
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 015699 355 EVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVYFLFIM 393 (402)
Q Consensus 355 eiLe~~~~~ef~~i~~plf~~la~ci~S~hfqVAErALm 393 (402)
++++..+. .+......++..+..++.+++..|-++|+-
T Consensus 160 ~~~~~~~~-~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~ 197 (1230)
T 1u6g_C 160 DMLSRQGG-LLVNFHPSILTCLLPQLTSPRLAVRKRTII 197 (1230)
T ss_dssp HHHHHTCS-SCTTTHHHHHHHHGGGGGCSSHHHHHHHHH
T ss_pred HHHHHhHh-HHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 44432211 222344567777777888888888887753
No 27
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=50.64 E-value=1.6e+02 Score=31.38 Aligned_cols=149 Identities=10% Similarity=0.116 Sum_probs=71.7
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHhHhhhcccCCcchHHHHHHHHHHHhccCCC--chH
Q 015699 210 VRLLDLFDSEDPRERDCLKTVLHRIYGKFM-AHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALP--LKE 286 (402)
Q Consensus 210 ~~Ll~lf~S~DprERd~LktiLhrIY~Kf~-~~R~~IRk~i~nif~~fi~e~e~~nGIaeLLeIlgSIInGFa~P--LKe 286 (402)
.++++.+. .|++.++.+..+++++-..+. ...+++-..+..++..|- . .+++.+|.+++.++..|... ..+
T Consensus 689 ~~~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~--~---~~~~~~l~l~~~li~~f~~~~~~~~ 762 (963)
T 2x19_B 689 QKVLSKWL-NDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYS--T---IPQASALDLTRQLVHIFAHEPAHFP 762 (963)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHH--H---SCCHHHHHHHHHHHHHHTTCTTTCH
T ss_pred HHHHHhcc-CchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHH--c---CCccHHHHHHHHHHHHhCCCcchHH
Confidence 34444432 456667766667776432211 012334333333333322 1 24678999999999865442 111
Q ss_pred HHHHHHHHHhhccCCCCCcccchhhHHHHHHHHHhcCCCcHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhcCChHHH-
Q 015699 287 EHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEF- 365 (402)
Q Consensus 287 Ehk~fl~~vLlPLHk~~~l~~y~~qL~yci~qfieKDp~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~~ef- 365 (402)
.+..+.+.+..|+...+.+|+.-...+. .-|+.-+..++..+...-+
T Consensus 763 -----------------~~~~~l~~~~~~~l~~~~~~~~~~pd~~---------------~~~f~ll~~~~~~~~~~~~~ 810 (963)
T 2x19_B 763 -----------------PIEALFLLVTSVTLTLFQQGPRDHPDIV---------------DSFMQLLAQALKRKPDLFLC 810 (963)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHCTTTCHHHH---------------HHHHHHHHHHHHHCGGGGGC
T ss_pred -----------------HHHHHHHHHHHHHHHHHhhCcccCchHH---------------HHHHHHHHHHHHhCcHHHcC
Confidence 1112334445555555544332111111 1223333333333222111
Q ss_pred HHH-HHHHHHHHHHhhCCCcHHHHHHHHHHHhh
Q 015699 366 QKI-MVPLFRRIGCCLNSSHYQVYFLFIMCMLI 397 (402)
Q Consensus 366 ~~i-~~plf~~la~ci~S~hfqVAErALm~~~~ 397 (402)
... ...++..+..++..+|.-|+..|+ .+|.
T Consensus 811 ~~~~~~~i~~~~~~~l~~~~~~~~~~~l-~~l~ 842 (963)
T 2x19_B 811 ERLDVKAVFQCAVLALKFPEAPTVKASC-GFFT 842 (963)
T ss_dssp TTSCHHHHHHHHHHHTTCSCHHHHHHHH-HHHH
T ss_pred CcccHHHHHHHHHHHcCCCCHHHHHHHH-HHHH
Confidence 111 446777777788888888887774 6664
No 28
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=47.23 E-value=1.4e+02 Score=28.11 Aligned_cols=110 Identities=10% Similarity=0.096 Sum_probs=59.2
Q ss_pred HHHHHHHhhcCCC-ChHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHhHhhhcccCCcchHHHHHHHHHHHhccCCCc
Q 015699 207 LFIVRLLDLFDSE-DPRERDCLKTVLHRIYGKFMAH-RQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPL 284 (402)
Q Consensus 207 ~Fi~~Ll~lf~S~-DprERd~LktiLhrIY~Kf~~~-R~~IRk~i~nif~~fi~e~e~~nGIaeLLeIlgSIInGFa~PL 284 (402)
..+..|+.++.++ |+.-|...-.+|..+...-... +.++..-+-..+.+.+... ...--...++.|+.+..+.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~vr~~a~~~L~~l~~~~---- 138 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE-FEDVQEQAVWALGNIAGDS---- 138 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTC----
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHccCC----
Confidence 5778888888888 8888888888888877532222 2233333334555555432 1111233577777776543
Q ss_pred hHHHHHHH-----HHHhhccCCCCCcccchhhHHHHHHHHHhc
Q 015699 285 KEEHKIFL-----CRALIPLHKPKSVGIYHQQLTYCVVQFIDK 322 (402)
Q Consensus 285 KeEhk~fl-----~~vLlPLHk~~~l~~y~~qL~yci~qfieK 322 (402)
++.+..+ ...|+.+.+...-.....+-..|+..+...
T Consensus 139 -~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 139 -TMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp -HHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 1222221 345555555322233444555666666543
No 29
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=47.08 E-value=2.4e+02 Score=30.33 Aligned_cols=182 Identities=8% Similarity=0.042 Sum_probs=88.5
Q ss_pred cchhhHHHHHHHHHHhcCCCC--------------hHHHhhhcCHHHHHHHHhhcCC--CChHHHHHHHHHHHHHhhhh-
Q 015699 176 WSHLQIVYDLLLRFVSYGSLD--------------VKVAKKYVDHLFIVRLLDLFDS--EDPRERDCLKTVLHRIYGKF- 238 (402)
Q Consensus 176 WpHLqlVYeillrfv~s~~~d--------------~k~ak~~id~~Fi~~Ll~lf~S--~DprERd~LktiLhrIY~Kf- 238 (402)
+.++.-|.+.+++.+. +... .+...+|++ .++..|..++++ -+.++|..+-+.+-+|....
T Consensus 541 ~~~l~~vl~~l~~~l~-~~v~~~A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~ 618 (971)
T 2x1g_F 541 PAYIPPAINLLVRGLN-SSMSAQATLGLKELCRDCQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR 618 (971)
T ss_dssp --CHHHHHHHHHHHHH-SSCHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC
Confidence 4677777777776552 2221 112234543 466777788877 57899999999998888654
Q ss_pred -hhhhHHHHHHHHHH---HhHhhhccc----CCcchHHHHHHHHHHHhccCCCchHHH--------HHHHHHHhhcc---
Q 015699 239 -MAHRQFIRQAVCNI---IYRFVFETE----RHNGIAELLEIFGSIISGFALPLKEEH--------KIFLCRALIPL--- 299 (402)
Q Consensus 239 -~~~R~~IRk~i~ni---f~~fi~e~e----~~nGIaeLLeIlgSIInGFa~PLKeEh--------k~fl~~vLlPL--- 299 (402)
-..-+++.+.+..+ +.+.+.... .-.-+.+.|+.++.++.+......+.. ..-+...++|+
T Consensus 619 ~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 698 (971)
T 2x1g_F 619 PEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKR 698 (971)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHH
Confidence 22223343333222 222222111 112356678888888887654321100 00011222221
Q ss_pred -CCC-CCcccchhhHHHHHHH---HHhcC-CCcHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhcCCh
Q 015699 300 -HKP-KSVGIYHQQLTYCVVQ---FIDKD-PKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSM 362 (402)
Q Consensus 300 -Hk~-~~l~~y~~qL~yci~q---fieKD-p~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~ 362 (402)
... ..-.........++.. .+.++ ..+...++.+|+.-.-.+ .+..||+-+..++.....
T Consensus 699 ~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~---~~~~~l~l~~~~i~~~~~ 764 (971)
T 2x1g_F 699 IAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTR---CCAPTLEISKTAIVMFFK 764 (971)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC-----CCHHHHHHHHHHHTTCCC
T ss_pred HHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCC
Confidence 110 0000111111111111 12222 235677777887665432 347899999999987755
No 30
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=44.25 E-value=1.5e+02 Score=29.12 Aligned_cols=177 Identities=13% Similarity=0.060 Sum_probs=83.1
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhhh--hhhhHHHHHHHHHHHhHhhhcccCCcchHHHHHHHHHHHhccCCCchH
Q 015699 209 IVRLLDLFDSEDPRERDCLKTVLHRIYGKF--MAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKE 286 (402)
Q Consensus 209 i~~Ll~lf~S~DprERd~LktiLhrIY~Kf--~~~R~~IRk~i~nif~~fi~e~e~~nGIaeLLeIlgSIInGFa~PLKe 286 (402)
+..|+..+.|+|+..|...-..|.++.... ...+..+..-+-..|.+++.......--.+.++.|+.|..|- .
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-----~ 150 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-----S 150 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-----H
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-----H
Confidence 455666777888888877777776664432 223334444444556666643321222334677777777653 2
Q ss_pred HHHHHH-----HHHhhccCCCCCcccchhhHHHHHHHHHhcCCC---------cHHHHHHHhhccCCCCCchhHHHHHHH
Q 015699 287 EHKIFL-----CRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPK---------LATNAIKGLLKYWPVTNSQKELMFISE 352 (402)
Q Consensus 287 Ehk~fl-----~~vLlPLHk~~~l~~y~~qL~yci~qfieKDp~---------L~~~vi~~LLk~WP~tns~KEvlFL~E 352 (402)
+++..+ ...|+.|.+.... ....+-..++......++. ....++..|.+. ++..=...-+.-
T Consensus 151 ~~~~~~~~~g~i~~L~~lL~~~~~-~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~---~~~~v~~~a~~~ 226 (528)
T 4b8j_A 151 ENTKVVIDHGAVPIFVKLLGSSSD-DVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH---TKLSMLRNATWT 226 (528)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT---CCHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHhcCCCH-HHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC---CCHHHHHHHHHH
Confidence 333332 3456666665322 2233333444444433332 222222222111 111111111222
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 015699 353 LEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVYFLFIMCM 395 (402)
Q Consensus 353 leeiLe~~~~~ef~~i~~plf~~la~ci~S~hfqVAErALm~~ 395 (402)
|..+...-+...+ .+...+...|...+.+.+-.|.+.|+.++
T Consensus 227 L~~L~~~~~~~~~-~~~~~~l~~L~~lL~~~~~~v~~~a~~aL 268 (528)
T 4b8j_A 227 LSNFCRGKPQPSF-EQTRPALPALARLIHSNDEEVLTDACWAL 268 (528)
T ss_dssp HHHHHCSSSCCCH-HHHTTHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCcH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 2233322111111 12345666677777888878877775433
No 31
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=43.80 E-value=1.4e+02 Score=32.89 Aligned_cols=178 Identities=12% Similarity=0.108 Sum_probs=87.2
Q ss_pred cCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHhhhcccCCcchHHHHHHHHHHHhccCCC
Q 015699 204 VDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALP 283 (402)
Q Consensus 204 id~~Fi~~Ll~lf~S~DprERd~LktiLhrIY~Kf~~~R~~IRk~i~nif~~fi~e~e~~nGIaeLLeIlgSIInGFa~P 283 (402)
.|-.-+.+++..+.++|..+|......|..+...= + +.. ....++.+=-...-++.| +.+|...|+.--..
T Consensus 13 ~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p-~---~~~-~l~~iL~~s~~~~vr~~a----a~~Lk~~i~~~W~~ 83 (1049)
T 3m1i_C 13 LDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNP-D---AWQ-KADQILQFSTNPQSKFIA----LSILDKLITRKWKL 83 (1049)
T ss_dssp CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHST-T---GGG-GHHHHHHHCSCHHHHHHH----HHHHHHHHHHTGGG
T ss_pred ccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhCc-h---HHH-HHHHHHhhCCCHHHHHHH----HHHHHHHHHhhCcc
Confidence 34445667777777778777877777776553311 1 000 001111110000001111 22233333322124
Q ss_pred chHHHHHHHHHHhhccCCCCC--------cccchhhHHHHHHHHHhc-----CCCcHHHHHHHhhccCCCCCc-hhH--H
Q 015699 284 LKEEHKIFLCRALIPLHKPKS--------VGIYHQQLTYCVVQFIDK-----DPKLATNAIKGLLKYWPVTNS-QKE--L 347 (402)
Q Consensus 284 LKeEhk~fl~~vLlPLHk~~~--------l~~y~~qL~yci~qfieK-----Dp~L~~~vi~~LLk~WP~tns-~KE--v 347 (402)
+.++.+..++..|+.+..... -.....+++.|+...... -|++...++..+ - ++. .++ .
T Consensus 84 l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~----~-~~~~~~~~~l 158 (1049)
T 3m1i_C 84 LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSS----S-SSVNVCENNM 158 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHH----T-TCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHH----c-cChHHHHHHH
Confidence 667788888888877765422 124456777777776544 344444444332 2 222 234 2
Q ss_pred HHHHHHHHHHhcCCh------------HHHHHHHHHHHHHHHHhhCC-CcHHHHHHHHHHH
Q 015699 348 MFISELEEVLEMTSM------------AEFQKIMVPLFRRIGCCLNS-SHYQVYFLFIMCM 395 (402)
Q Consensus 348 lFL~EleeiLe~~~~------------~ef~~i~~plf~~la~ci~S-~hfqVAErALm~~ 395 (402)
.+|.-|-|.+..... +.+..-...+|..+..|+.+ .+..|..+||-|+
T Consensus 159 ~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l 219 (1049)
T 3m1i_C 159 IVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESL 219 (1049)
T ss_dssp HHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 234433322221111 33555566677777777754 4567777777666
No 32
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=42.97 E-value=2.9e+02 Score=28.32 Aligned_cols=172 Identities=10% Similarity=0.080 Sum_probs=86.8
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHhhhcccCCcchHHHHHHHHHHHhccCCCchHH
Q 015699 208 FIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEE 287 (402)
Q Consensus 208 Fi~~Ll~lf~S~DprERd~LktiLhrIY~Kf~~~R~~IRk~i~nif~~fi~e~e~~nGIaeLLeIlgSIInGFa~PLKeE 287 (402)
.+..|+..+.+.|..=|..+-..++++-.||...-.+. + +.+.+++.... ..-..|++..+..|+.... -+++.
T Consensus 386 iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~---v-~~ll~lL~~~~-~~v~~~~~~~l~~ii~~~p-~l~~~ 459 (618)
T 1w63_A 386 MMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWH---I-DTIMRVLTTAG-SYVRDDAVPNLIQLITNSV-EMHAY 459 (618)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHH---H-HHHHHHHHHTG-GGSCSSHHHHHHHHHHHSC-STHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHH---H-HHHHHHHHhcc-chhHHHHHHHHHHHHhcCh-hHHHH
Confidence 44555555555666666666666666666663332222 1 22333333222 1223445566666665432 23222
Q ss_pred HHHHHHHHhhccCCCC-CcccchhhHHHHHHHHHhc--------------CCCcHHHHHHHhhccCCCCCchhHHHHHHH
Q 015699 288 HKIFLCRALIPLHKPK-SVGIYHQQLTYCVVQFIDK--------------DPKLATNAIKGLLKYWPVTNSQKELMFISE 352 (402)
Q Consensus 288 hk~fl~~vLlPLHk~~-~l~~y~~qL~yci~qfieK--------------Dp~L~~~vi~~LLk~WP~tns~KEvlFL~E 352 (402)
- .+.|+.+.... .......-..+|+-.|.+. +|+.+..+++.+++.+ ..++.=+...|.=
T Consensus 460 ~----v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vr~~~lta 534 (618)
T 1w63_A 460 T----VQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN-MSTSVTRGYALTA 534 (618)
T ss_dssp H----HHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCCHHHHHHHHHH
T ss_pred H----HHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHH
Confidence 2 22232222211 1111123467777777542 3344566677777655 3333334445555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 015699 353 LEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVYFLFIMCML 396 (402)
Q Consensus 353 leeiLe~~~~~ef~~i~~plf~~la~ci~S~hfqVAErALm~~~ 396 (402)
+..+.-..+.. ...+-..|..|.+|.+..|=+||.+ +|
T Consensus 535 ~~Kl~~~~~~~-----~~~l~~~L~~~~~~~d~evrdRA~~-y~ 572 (618)
T 1w63_A 535 IMKLSTRFTCT-----VNRIKKVVSIYGSSIDVELQQRAVE-YN 572 (618)
T ss_dssp HHHHHTTCSSC-----HHHHHHHHHHHTTCSCHHHHHHHHH-HH
T ss_pred HHHHHHhCcch-----HHHHHHHHHHhcCCCCHHHHHHHHH-HH
Confidence 55555444321 2334445677889999999999964 55
No 33
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=42.79 E-value=68 Score=35.59 Aligned_cols=122 Identities=9% Similarity=0.103 Sum_probs=67.6
Q ss_pred HHHHHHHHhccCCCchHH----HHHHHHHHhhccCCC----CCcccchhhHHHHHHHHHhcC-CCcHHHHHHHhhccCCC
Q 015699 270 LEIFGSIISGFALPLKEE----HKIFLCRALIPLHKP----KSVGIYHQQLTYCVVQFIDKD-PKLATNAIKGLLKYWPV 340 (402)
Q Consensus 270 LeIlgSIInGFa~PLKeE----hk~fl~~vLlPLHk~----~~l~~y~~qL~yci~qfieKD-p~L~~~vi~~LLk~WP~ 340 (402)
+.+|...|+ .+.++ .+..++..|+.+... ..-...-.+|+.+++..+..+ |.-=...+..|+.-|-.
T Consensus 64 ~~~L~~~I~----~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~ 139 (980)
T 3ibv_A 64 LQTLSEKVR----EWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAA 139 (980)
T ss_dssp HHHHHHHHH----HCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHH----hCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcC
Confidence 455556666 34445 667777777776653 112234577888887776554 22222333333333432
Q ss_pred CCc-hhHHHHHHHHH----HHHhcC---Ch---------------HHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 015699 341 TNS-QKELMFISELE----EVLEMT---SM---------------AEFQKIMVPLFRRIGCCLNSSHYQVYFLFIMCM 395 (402)
Q Consensus 341 tns-~KEvlFL~Ele----eiLe~~---~~---------------~ef~~i~~plf~~la~ci~S~hfqVAErALm~~ 395 (402)
++. .--..||.-+. |+.+.. +. ..+..+..-.+..+..|..+.+-.+++.||-|+
T Consensus 140 ~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l 217 (980)
T 3ibv_A 140 SSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVY 217 (980)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 233 22334565555 332210 11 124555777788888998888888888887664
No 34
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=41.68 E-value=1.7e+02 Score=25.22 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=38.0
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhhhhhhhh-HHHHHHHHHHHhHhhhcccCCcchHHHHHHHHHHHhc
Q 015699 210 VRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHR-QFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISG 279 (402)
Q Consensus 210 ~~Ll~lf~S~DprERd~LktiLhrIY~Kf~~~R-~~IRk~i~nif~~fi~e~e~~nGIaeLLeIlgSIInG 279 (402)
..++.++.|+|+..|...-..|.++...-...+ .++..-+-..+.+++.... ..-....+.+++.+..|
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~ 84 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASG 84 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcC
Confidence 445566668888888888777766555432222 2333333355666664332 22233456666666554
No 35
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=39.13 E-value=22 Score=26.04 Aligned_cols=46 Identities=24% Similarity=0.390 Sum_probs=37.3
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHhhccCCCCCcccchhhHHHHHHH
Q 015699 271 EIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQ 318 (402)
Q Consensus 271 eIlgSIInGFa~PLKeEhk~fl~~vLlPLHk~~~l~~y~~qL~yci~q 318 (402)
+++.|+|+.-. |.++||..+...|=-.-..+.++.|||-+...|+.
T Consensus 5 sViRSvikSS~--l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~~~ 50 (56)
T 1oks_A 5 SVIRSIIKSSR--LEEDRKRYLMTLLDDIKGANDLAKFHQMLVKIIMK 50 (56)
T ss_dssp HHHHHHHHHSC--SCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc--cchHHHHHHHHHHHHccccchHHHHHHHHHHHHHH
Confidence 56778888764 78899999998888888889999999988776653
No 36
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=38.55 E-value=2e+02 Score=25.13 Aligned_cols=158 Identities=15% Similarity=0.205 Sum_probs=89.5
Q ss_pred CCCccchhhHHHHHHHHHHhc-CCCChHHHhhhcCHHHHHHHHhhcC-CCChHHHH-------------------HHHHH
Q 015699 172 FDPAWSHLQIVYDLLLRFVSY-GSLDVKVAKKYVDHLFIVRLLDLFD-SEDPRERD-------------------CLKTV 230 (402)
Q Consensus 172 ~e~sWpHLqlVYeillrfv~s-~~~d~k~ak~~id~~Fi~~Ll~lf~-S~DprERd-------------------~Lkti 230 (402)
.+..|..-.-..+-|..++.. +.+.. .. + .+++..|..++. ..+++-|. ++..+
T Consensus 25 ~s~~w~~R~~a~~~L~~l~~~~~~~~~---~~-~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~i 99 (242)
T 2qk2_A 25 EEKKWTLRKESLEVLEKLLTDHPKLEN---GE-Y-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASAC 99 (242)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCSSBCC---CC-C-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHccCCCCCC---CC-H-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 468898877777777788775 44321 12 2 456777777773 67776654 44445
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHhHhhhcccCCcchHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCCCC-Ccccch
Q 015699 231 LHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPK-SVGIYH 309 (402)
Q Consensus 231 LhrIY~Kf~~~R~~IRk~i~nif~~fi~e~e~~nGIaeLLeIlgSIInGFa~PLKeEhk~fl~~vLlPLHk~~-~l~~y~ 309 (402)
+-.+..++-...+.+|.+....+..++.. .++.++++.+...++.=+...|.+--.++.++ +--|.+. ....|.
T Consensus 100 lp~ll~~l~d~~~~vr~~a~~aL~~~~~~----~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~-l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 100 VPSLLEKFKEKKPNVVTALREAIDAIYAS----TSLEAQQESIVESLSNKNPSVKSETALFIARA-LTRTQPTALNKKLL 174 (242)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHTT----SCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH-HTTCCGGGCCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-HHHcCCCCccHHHH
Confidence 55555555555666777777766666532 34666776666655543333444444443333 3233332 345566
Q ss_pred hhHHHHHHHHHh-cCC---CcHHHHHHHhhccCC
Q 015699 310 QQLTYCVVQFID-KDP---KLATNAIKGLLKYWP 339 (402)
Q Consensus 310 ~qL~yci~qfie-KDp---~L~~~vi~~LLk~WP 339 (402)
..+...+...++ .++ .-+..++-.+.+.++
T Consensus 175 ~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 175 KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 677777777773 222 234445555555554
No 37
>3bbz_A P protein, phosphoprotein; molten globule, viral protein, replication; 2.10A {Mumps virus}
Probab=37.60 E-value=31 Score=24.85 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=26.5
Q ss_pred CChHHHHHHHHHHHhcCcccccccCCccChhhHHHHHHHHH
Q 015699 79 VSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLI 119 (402)
Q Consensus 79 v~~~e~~~Lf~~Kl~~C~~ifDFsdp~~d~~~Ke~K~~tL~ 119 (402)
+|++....-|..|+..|...=|| |++||..+.
T Consensus 15 i~np~~r~~Fe~ki~~~~tE~q~---------k~iKr~IIR 46 (49)
T 3bbz_A 15 VANPQMKQAFEQRLAKASTEDAL---------NDIKRDIIR 46 (49)
T ss_dssp CCSHHHHHHHHHHHHTCCSHHHH---------HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHH---------HHHHHHHHH
Confidence 57778888899999999998887 778887654
No 38
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=36.55 E-value=3.3e+02 Score=27.01 Aligned_cols=108 Identities=13% Similarity=0.054 Sum_probs=62.7
Q ss_pred ChHHHhhhcCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhhhhHHHHHH-HHHHHhHhhhcccCCcch----HHHH
Q 015699 196 DVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQA-VCNIIYRFVFETERHNGI----AELL 270 (402)
Q Consensus 196 d~k~ak~~id~~Fi~~Ll~lf~S~DprERd~LktiLhrIY~Kf~~~R~~IRk~-i~nif~~fi~e~e~~nGI----aeLL 270 (402)
++...+..++..-|-.|+.++.|+|+.-|+..-..|..|-+.-...|..+.+. .-..+...+......... ..+.
T Consensus 132 ~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~ 211 (510)
T 3ul1_B 132 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 211 (510)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHH
Confidence 44455566677788899999999999999999999988876666666665432 223444544332222221 2234
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHhhccCCCC
Q 015699 271 EIFGSIISGFALPLKEEHKIFLCRALIPLHKPK 303 (402)
Q Consensus 271 eIlgSIInGFa~PLKeEhk~fl~~vLlPLHk~~ 303 (402)
..+..+..+-..........-...+|..|....
T Consensus 212 ~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~ 244 (510)
T 3ul1_B 212 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 244 (510)
T ss_dssp HHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC
Confidence 445555544433333333333344555555543
No 39
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=34.68 E-value=3.9e+02 Score=28.65 Aligned_cols=112 Identities=14% Similarity=0.081 Sum_probs=54.4
Q ss_pred chHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCCCC-CcccchhhHHHHHHHH---HhcCCCcHHHHHHHhhccC-C
Q 015699 265 GIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPK-SVGIYHQQLTYCVVQF---IDKDPKLATNAIKGLLKYW-P 339 (402)
Q Consensus 265 GIaeLLeIlgSIInGFa~PLKeEhk~fl~~vLlPLHk~~-~l~~y~~qL~yci~qf---ieKDp~L~~~vi~~LLk~W-P 339 (402)
-..-.|-.+|+|..|...-.++ +..-+.. ++|-...+ .-..-......++.+| +..++.....++.+|++.. |
T Consensus 480 ~~eaal~~l~~iae~~~~~~~~-~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~ 557 (971)
T 2x1g_F 480 KLEACIYSFQSVAEHFGGEEKR-QIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLNS 557 (971)
T ss_dssp HHHHHHHHHHHTTTC------C-HHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhcChhhhH-HHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCh
Confidence 3444677788888887543322 2222333 33433311 1122233444555555 4577888888888888765 2
Q ss_pred CCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhCCC
Q 015699 340 VTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSS 383 (402)
Q Consensus 340 ~tns~KEvlFL~EleeiLe~~~~~ef~~i~~plf~~la~ci~S~ 383 (402)
.. ...--.=+..+.+.+ ..+......++...+..++++.
T Consensus 558 ~v----~~~A~~al~~l~~~~-~~~l~p~~~~ll~~l~~~l~~~ 596 (971)
T 2x1g_F 558 SM----SAQATLGLKELCRDC-QLQLKPYADPLLNACHASLNTG 596 (971)
T ss_dssp SC----HHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHST
T ss_pred HH----HHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHcCC
Confidence 11 111122233344444 3456677777888887777773
No 40
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=33.95 E-value=80 Score=26.89 Aligned_cols=82 Identities=7% Similarity=0.160 Sum_probs=48.6
Q ss_pred HHHHhcCCCcHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHHHHHHhhCCCcHH
Q 015699 317 VQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSM----------AEFQKIMVPLFRRIGCCLNSSHYQ 386 (402)
Q Consensus 317 ~qfieKDp~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~----------~ef~~i~~plf~~la~ci~S~hfq 386 (402)
+..+..+.+-+..++..+.++=-++.+.+-+.+|.-+..|+..... ..|.+.+..+|..+..|. ..+-.
T Consensus 30 T~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~~~~-~~~r~ 108 (145)
T 3d9j_A 30 TKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCP-GDDKS 108 (145)
T ss_dssp HHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHTSSC-GGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHHhCC-HHHHH
Confidence 3333334444444444444444445566667777777777754322 357788888887666665 45555
Q ss_pred HHHHHHHHHhhcCC
Q 015699 387 VYFLFIMCMLINKR 400 (402)
Q Consensus 387 VAErALm~~~~N~~ 400 (402)
-.+| |+.+|..-+
T Consensus 109 kl~r-Ll~iW~~r~ 121 (145)
T 3d9j_A 109 KIVR-VLNLWQKNN 121 (145)
T ss_dssp HHHH-HHHHHHHTT
T ss_pred HHHH-HHHHhcCCC
Confidence 6666 568997543
No 41
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=33.82 E-value=2.2e+02 Score=28.09 Aligned_cols=28 Identities=14% Similarity=0.277 Sum_probs=17.1
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhh
Q 015699 209 IVRLLDLFDSEDPRERDCLKTVLHRIYG 236 (402)
Q Consensus 209 i~~Ll~lf~S~DprERd~LktiLhrIY~ 236 (402)
+..|+..+.|+|+..|...-..|.++..
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~ 116 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILS 116 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4556666666676666666666655543
No 42
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=33.26 E-value=2.1e+02 Score=23.85 Aligned_cols=178 Identities=12% Similarity=0.031 Sum_probs=84.8
Q ss_pred cCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhhhhHHH-HHHHHHHHhHhhhcccCCcchHHHHHHHHHHHhccCC
Q 015699 204 VDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFI-RQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFAL 282 (402)
Q Consensus 204 id~~Fi~~Ll~lf~S~DprERd~LktiLhrIY~Kf~~~R~~I-Rk~i~nif~~fi~e~e~~nGIaeLLeIlgSIInGFa~ 282 (402)
....+...|..++.|+|+..|...-..|..+-..-...|..+ ..-.-..+.+++... ...-....+..++.+..+-
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~-- 85 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGG-- 85 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSC--
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCC--
Confidence 334455677888889999999888888877764333333332 222334455555432 1222334566777665443
Q ss_pred CchHHHHHHH-----HHHhhccCCCCCcccchhhHHHHHHHHHhcCC---------CcHHHHHHHhhccCCCCCchhHHH
Q 015699 283 PLKEEHKIFL-----CRALIPLHKPKSVGIYHQQLTYCVVQFIDKDP---------KLATNAIKGLLKYWPVTNSQKELM 348 (402)
Q Consensus 283 PLKeEhk~fl-----~~vLlPLHk~~~l~~y~~qL~yci~qfieKDp---------~L~~~vi~~LLk~WP~tns~KEvl 348 (402)
++.+..+ ...|+.+.+.... .-...-..++......++ .....+++.|- . .+..=...
T Consensus 86 ---~~~~~~i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~---~~~~v~~~ 157 (210)
T 4db6_A 86 ---NEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-S---PNEQILQE 157 (210)
T ss_dssp ---HHHHHHHHHTTCHHHHHHHTTCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT-C---SCHHHHHH
T ss_pred ---cHHHHHHHHCCCHHHHHHHHcCCcH-HHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHc-C---CCHHHHHH
Confidence 2232222 3556666665531 111122233333332222 23333333332 1 11111111
Q ss_pred HHHHHHHHHhcCChHHHHHHH-HHHHHHHHHhhCCCcHHHHHHHHH
Q 015699 349 FISELEEVLEMTSMAEFQKIM-VPLFRRIGCCLNSSHYQVYFLFIM 393 (402)
Q Consensus 349 FL~EleeiLe~~~~~ef~~i~-~plf~~la~ci~S~hfqVAErALm 393 (402)
=+.-|..+... .++.-..+. .-....|.+.+.+.+..|.++|+.
T Consensus 158 a~~aL~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~ 202 (210)
T 4db6_A 158 ALWALSNIASG-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE 202 (210)
T ss_dssp HHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHHHHHHHHcC-CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence 12223333321 122222221 235677888889999999999964
No 43
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=31.31 E-value=1.8e+02 Score=27.21 Aligned_cols=73 Identities=15% Similarity=0.198 Sum_probs=38.0
Q ss_pred HHHHHHhcCCCcHHHHHHHhhccCCCCCchhHH--HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 015699 315 CVVQFIDKDPKLATNAIKGLLKYWPVTNSQKEL--MFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVYFLFI 392 (402)
Q Consensus 315 ci~qfieKDp~L~~~vi~~LLk~WP~tns~KEv--lFL~EleeiLe~~~~~ef~~i~~plf~~la~ci~S~hfqVAErAL 392 (402)
.-..-+.+||.|.+.++++++-+= +++.-|| .-.+.|+|+... .++ +...+..-|...++.....|..+|+
T Consensus 39 a~el~~~~dp~ll~~~l~~il~~~--~~~~~~vrk~~~~Fi~e~~~~-k~~----l~~~~l~~L~~Ll~d~d~~V~K~~I 111 (257)
T 3gs3_A 39 VQETVLGSCAELAEEFLESVLSLA--HDSNMEVRKQVVAFVEQVCKV-KVE----LLPHVINVVSMLLRDNSAQVIKRVI 111 (257)
T ss_dssp HHHHHTTTTGGGHHHHHHHHHGGG--GCSCHHHHHHHHHHHHHHHHH-CGG----GHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHccCHhHHHHHHHHHHHhc--cCChHHHHHHHHHHHHHHHHH-HHH----HHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 333345678888888888888762 3332221 223334444421 122 3333333444445566777777776
Q ss_pred HH
Q 015699 393 MC 394 (402)
Q Consensus 393 m~ 394 (402)
.|
T Consensus 112 ~~ 113 (257)
T 3gs3_A 112 QA 113 (257)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 44
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=30.57 E-value=76 Score=35.22 Aligned_cols=82 Identities=16% Similarity=0.141 Sum_probs=53.0
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHhHhhhcccCCcchHHHHHHHHHHHhccCCCchHH
Q 015699 209 IVRLLDLFDSEDPRERDCLKTVLHRIYGKFM-AHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEE 287 (402)
Q Consensus 209 i~~Ll~lf~S~DprERd~LktiLhrIY~Kf~-~~R~~IRk~i~nif~~fi~e~e~~nGIaeLLeIlgSIInGFa~PLKeE 287 (402)
+.+.++.+. .+.+=|+.....+||+...+. ...|++-+.+..++. .-...+.++.|.++|.+|..|.. +
T Consensus 704 il~~l~~~~-~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~-----~~~~~e~~~fL~l~~qli~~f~~----~ 773 (980)
T 3ibv_A 704 IFLILDRMG-FNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLN-----SIDMNELVDVLSFISQLIHIYKD----N 773 (980)
T ss_dssp HHHHHHHSC-CSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHH-----HCCTTTHHHHHHHHHHHHHHTTT----T
T ss_pred HHHHHHhcC-CcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHHHHHH----H
Confidence 344555554 566777779999999998662 234455555555441 22456788999999999999964 3
Q ss_pred HHHHHHHHhhccC
Q 015699 288 HKIFLCRALIPLH 300 (402)
Q Consensus 288 hk~fl~~vLlPLH 300 (402)
+..++...+-||.
T Consensus 774 ~~~~l~~ll~~l~ 786 (980)
T 3ibv_A 774 MMEITNRMLPTLL 786 (980)
T ss_dssp SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555543
No 45
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=29.14 E-value=3.2e+02 Score=24.58 Aligned_cols=127 Identities=13% Similarity=0.158 Sum_probs=80.1
Q ss_pred cchHHHHHHHHHHHhccCCC--chHHHHHHHHHHhhccCCCCCcccc----hhhHHHHHHHHHhcCCCcHHHHHHHhhcc
Q 015699 264 NGIAELLEIFGSIISGFALP--LKEEHKIFLCRALIPLHKPKSVGIY----HQQLTYCVVQFIDKDPKLATNAIKGLLKY 337 (402)
Q Consensus 264 nGIaeLLeIlgSIInGFa~P--LKeEhk~fl~~vLlPLHk~~~l~~y----~~qL~yci~qfieKDp~L~~~vi~~LLk~ 337 (402)
......|+++..++.++... ...... .+...++|...-++++.= ...-..|+..+++.... ...++..++..
T Consensus 70 ~v~~~al~~l~~~~~~~~~~~~~~~~~~-~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-~~~~~e~l~~~ 147 (278)
T 4ffb_C 70 VAQEQAIVALNSLIDAFASSSLKNAHNI-TLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-ITQSVELVIPF 147 (278)
T ss_dssp HHHHHHHHHHHHHHTTCC---CCHHHHH-HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-SHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhH-HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 33445688888888866533 222222 224455554443433322 23345677778876544 45577888888
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 015699 338 WPVTNSQKELMFISELEEVLEMTSM--AEFQKIMVPLFRRIGCCLNSSHYQVYFLFI 392 (402)
Q Consensus 338 WP~tns~KEvlFL~EleeiLe~~~~--~ef~~i~~plf~~la~ci~S~hfqVAErAL 392 (402)
+-.-|+.=..--+..|..+++.... ......+..+.+.+.+|+++.+-.|=+.|+
T Consensus 148 l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~ 204 (278)
T 4ffb_C 148 FEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTM 204 (278)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 8777776666678888888875322 223445667888999999999999987775
No 46
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=28.80 E-value=1.7e+02 Score=27.48 Aligned_cols=169 Identities=15% Similarity=0.192 Sum_probs=88.3
Q ss_pred ChHHHhhhcCHHHHHHHHhhcCC-CChHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHhHhhhcccCCcchHHHHHHH
Q 015699 196 DVKVAKKYVDHLFIVRLLDLFDS-EDPRERDCLKTVLHRIYGKFMA-HRQFIRQAVCNIIYRFVFETERHNGIAELLEIF 273 (402)
Q Consensus 196 d~k~ak~~id~~Fi~~Ll~lf~S-~DprERd~LktiLhrIY~Kf~~-~R~~IRk~i~nif~~fi~e~e~~nGIaeLLeIl 273 (402)
+++.....++..-+..|+.++.+ +++.-|...-..|..|-..+.. .+.|+..-.-..+.+.+.. ....--.+..+.+
T Consensus 113 n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~-~d~~v~~~A~~aL 191 (296)
T 1xqr_A 113 VAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ-QVQKLKVKSAFLL 191 (296)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHH
Confidence 55555566666788899999985 4788888888888777654433 2344432233445555543 2333344566677
Q ss_pred HHHHhccCCCchHHHHHHH-----HHHhhccCCCCCcccchhhHHHHHHHHHhcCCCcHHHHHHHhhccCCCCCchhHHH
Q 015699 274 GSIISGFALPLKEEHKIFL-----CRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELM 348 (402)
Q Consensus 274 gSIInGFa~PLKeEhk~fl-----~~vLlPLHk~~~l~~y~~qL~yci~qfieKDp~L~~~vi~~LLk~WP~tns~KEvl 348 (402)
+.+..|. ++.+..+ ...|+.|.+++.. ....+-..++...+...+ ..++..- .-+..
T Consensus 192 s~L~~~~-----~~~~~~vv~~g~i~~Lv~LL~~~d~-~v~~~al~aL~~l~~~~~----~~~~~~~--------~~~~~ 253 (296)
T 1xqr_A 192 QNLLVGH-----PEHKGTLCSMGMVQQLVALVRTEHS-PFHEHVLGALCSLVTDFP----QGVRECR--------EPELG 253 (296)
T ss_dssp HHHHHHC-----GGGHHHHHHTTHHHHHHHHHTSCCS-THHHHHHHHHHHHHTTCH----HHHHHHH--------CGGGC
T ss_pred HHHHhCC-----hHHHHHHHHcCCHHHHHHHHcCCCh-hHHHHHHHHHHHHHhCCh----hHHHHHh--------ccHHH
Confidence 7777663 1222222 2444444444322 223333333333332211 1111000 01123
Q ss_pred HHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhhCCC
Q 015699 349 FISELEEVLEMTS-MAEFQKIMVPLFRRIGCCLNSS 383 (402)
Q Consensus 349 FL~EleeiLe~~~-~~ef~~i~~plf~~la~ci~S~ 383 (402)
+...|++.++.++ .++.+.+..-.++.|-+|.+++
T Consensus 254 l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~~ 289 (296)
T 1xqr_A 254 LEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSP 289 (296)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCCC
Confidence 5566666677666 3445667777888888888764
No 47
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=27.63 E-value=3e+02 Score=26.93 Aligned_cols=104 Identities=14% Similarity=0.125 Sum_probs=67.0
Q ss_pred CCcchHHHHHHHHHHHhccCCCchHHHHHH--HHHHhhccCCCCCcccchhhHHHHHHHHHhcCCCcHHHHHHHhhccCC
Q 015699 262 RHNGIAELLEIFGSIISGFALPLKEEHKIF--LCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWP 339 (402)
Q Consensus 262 ~~nGIaeLLeIlgSIInGFa~PLKeEhk~f--l~~vLlPLHk~~~l~~y~~qL~yci~qfieKDp~L~~~vi~~LLk~WP 339 (402)
.+.|-.|..+++..+++-|+.+-.+.-+.- +...+.+. . +.+-.++..+.||-.=..+.++|+-
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~---------~-~e~iLv~Nsl~kDl~~~N~~iR~lA---- 124 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI---------A-EDVIIVTSSLTKDMTGKEDSYRGPA---- 124 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT---------S-SCGGGGHHHHHHHHHSSCHHHHHHH----
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC---------H-HHHHHHHHHHHhhcCCCcHhHHHHH----
Confidence 567888999999999999999887764442 23334333 1 2222556666666555556777764
Q ss_pred CCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 015699 340 VTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVYFLFIMCML 396 (402)
Q Consensus 340 ~tns~KEvlFL~EleeiLe~~~~~ef~~i~~plf~~la~ci~S~hfqVAErALm~~~ 396 (402)
|.-|..| ..++ +..++..-+-+|+.+.|.-|.-.|++|..
T Consensus 125 ----------LRtL~~I---~~~~----m~~~l~~~lk~~L~d~~pyVRk~A~l~~~ 164 (355)
T 3tjz_B 125 ----------VRALCQI---TDST----MLQAIERYMKQAIVDKVPSVSSSALVSSL 164 (355)
T ss_dssp ----------HHHHHHH---CCTT----THHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred ----------HHHHhcC---CCHH----HHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3333333 2333 34466666888888888888888887654
No 48
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=26.83 E-value=2.2e+02 Score=30.36 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhhCCCcH--HHHHHHHHHH
Q 015699 368 IMVPLFRRIGCCLNSSHY--QVYFLFIMCM 395 (402)
Q Consensus 368 i~~plf~~la~ci~S~hf--qVAErALm~~ 395 (402)
....++..+..++....- .+...||-|+
T Consensus 197 ~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l 226 (963)
T 2x19_B 197 ECGAVFPLLEQLLQQPSSPSCVRQKVLKCF 226 (963)
T ss_dssp GHHHHHHHHHHHHSCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 344556666666655322 3677777666
No 49
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=26.49 E-value=4e+02 Score=24.94 Aligned_cols=177 Identities=14% Similarity=0.156 Sum_probs=101.3
Q ss_pred hhcCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHhh----hcccCCcchHHHHHHHHHHH
Q 015699 202 KYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFV----FETERHNGIAELLEIFGSII 277 (402)
Q Consensus 202 ~~id~~Fi~~Ll~lf~S~DprERd~LktiLhrIY~Kf~~~R~~IRk~i~nif~~fi----~e~e~~nGIaeLLeIlgSII 277 (402)
.++...+..+|+ |.|.++|..--..|+.....-. +.. -+.-+++.+++ +++ .++...-.|+++.+++
T Consensus 45 ~~~~~~~~~~lf----s~d~k~~~~ale~L~~~l~~~~--~~~--~~~lDll~kw~~lr~~d~-N~~v~~~~L~~L~~l~ 115 (266)
T 2of3_A 45 NQAKVSLMSQLF----HKDFKQHLAALDSLVRLADTSP--RSL--LSNSDLLLKWCTLRFFET-NPAALIKVLELCKVIV 115 (266)
T ss_dssp TTBCHHHHHHHT----CSCHHHHHHHHHHHHHHHHHCH--HHH--HHTHHHHHHHHHHHTTSC-CHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHhc----CCCHHHHHHHHHHHHHHhhhCh--HHH--HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 334544544443 4688888876666665433211 111 11123344443 233 4555566788888877
Q ss_pred hcc---CCCchHHHHHHHHHHhhccCCCCC---cccchhhHHHHHHHHHhcCCCcHHHHHHHhhccCCCCCchhHHHHHH
Q 015699 278 SGF---ALPLKEEHKIFLCRALIPLHKPKS---VGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFIS 351 (402)
Q Consensus 278 nGF---a~PLKeEhk~fl~~vLlPLHk~~~---l~~y~~qL~yci~qfieKDp~L~~~vi~~LLk~WP~tns~KEvlFL~ 351 (402)
.-. .-.+.+... ..++|..--+. -..+.++...++.+..+= --...+..+++.-|-.-|..--.-+|.
T Consensus 116 ~~l~~~~y~~~~~ea----~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v--~~~~~v~~~l~~g~ksKN~R~R~e~l~ 189 (266)
T 2of3_A 116 ELIRDTETPMSQEEV----SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV--VGPLKMTPMLLDALKSKNARQRSECLL 189 (266)
T ss_dssp HHHHHTTCCCCHHHH----HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH--HCHHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHHHhccccchHHHH----HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 532 223433221 34445432221 123556666666555432 123456677777776566666678899
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 015699 352 ELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVYFLFIMCM 395 (402)
Q Consensus 352 EleeiLe~~~~~ef~~i~~plf~~la~ci~S~hfqVAErALm~~ 395 (402)
+|..+++..... ..+ ..++.+.||+|+++++-.|=+.|+-|+
T Consensus 190 ~l~~li~~~G~~-~~~-~l~~~~~ia~ll~D~d~~VR~aAl~~l 231 (266)
T 2of3_A 190 VIEYYITNAGIS-PLK-SLSVEKTVAPFVGDKDVNVRNAAINVL 231 (266)
T ss_dssp HHHHHHHHHCSG-GGG-GGCHHHHHGGGGGCSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-ccc-cccchHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999876554 222 233349999999999999999997554
No 50
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=23.50 E-value=6.3e+02 Score=26.16 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=50.4
Q ss_pred hhHHHHHHHHH---hcC---CCcHHHHHHHhhccCCCCCch-----hHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHH
Q 015699 310 QQLTYCVVQFI---DKD---PKLATNAIKGLLKYWPVTNSQ-----KELMFISELEEVLEMTS-MAEFQKIMVPLFRRIG 377 (402)
Q Consensus 310 ~qL~yci~qfi---eKD---p~L~~~vi~~LLk~WP~tns~-----KEvlFL~EleeiLe~~~-~~ef~~i~~plf~~la 377 (402)
.++.+|+.+-+ .+. .++...+.+.++-.|=.-... .++-+|.-+.|+...+. .++-..++..+|..|-
T Consensus 239 dRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~ 318 (507)
T 3u0r_A 239 DRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLL 318 (507)
T ss_dssp HHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHH
Confidence 45555655543 222 234555666677777766665 78899999999999987 6777788889998887
Q ss_pred HhhCC
Q 015699 378 CCLNS 382 (402)
Q Consensus 378 ~ci~S 382 (402)
..+=-
T Consensus 319 ~ymP~ 323 (507)
T 3u0r_A 319 EYMPL 323 (507)
T ss_dssp TTSCC
T ss_pred HHCCC
Confidence 76643
No 51
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=20.89 E-value=5.9e+02 Score=24.85 Aligned_cols=78 Identities=13% Similarity=0.220 Sum_probs=39.4
Q ss_pred CCCCCCCCCCCCCccchh------hHHHHHHHHHHhcCCCChHHHhhhc--------CHHHHHHHHhhcCCCChHHHHHH
Q 015699 162 GGETEDEEPMFDPAWSHL------QIVYDLLLRFVSYGSLDVKVAKKYV--------DHLFIVRLLDLFDSEDPRERDCL 227 (402)
Q Consensus 162 ~~d~eedep~~e~sWpHL------qlVYeillrfv~s~~~d~k~ak~~i--------d~~Fi~~Ll~lf~S~DprERd~L 227 (402)
.||.++++...++.=|-+ .-+-.++.-|+.+. |.+.+-..+ -+.||.+++..--....+||+.+
T Consensus 31 nyd~~~~~~~~~~~~p~ls~ee~~k~~~~ii~EYf~~~--d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~ 108 (358)
T 3eiq_C 31 NYDDDQENCVYETVVLPLDETAFEKTLTPIIQEYFEHG--DTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMT 108 (358)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHC--CHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHH
T ss_pred CCCCCCCCceeecCCCCCCHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHH
Confidence 377655544444433433 24445555555542 333222221 46799999997555679999999
Q ss_pred HHHHHHHhhhhhhh
Q 015699 228 KTVLHRIYGKFMAH 241 (402)
Q Consensus 228 ktiLhrIY~Kf~~~ 241 (402)
-.+|+.+|++.+..
T Consensus 109 s~LLs~L~~~~ls~ 122 (358)
T 3eiq_C 109 SKLLSDLCGTVMST 122 (358)
T ss_dssp HHHHHTTTTTSCCH
T ss_pred HHHHHHHHhCCCCH
Confidence 99999999766554
No 52
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=20.41 E-value=3.1e+02 Score=22.76 Aligned_cols=83 Identities=14% Similarity=0.072 Sum_probs=49.4
Q ss_pred ChHHHhhhcCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhhhhHHHH-HHHHHHHhHhhhcccCCcchHHHHHHHH
Q 015699 196 DVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIR-QAVCNIIYRFVFETERHNGIAELLEIFG 274 (402)
Q Consensus 196 d~k~ak~~id~~Fi~~Ll~lf~S~DprERd~LktiLhrIY~Kf~~~R~~IR-k~i~nif~~fi~e~e~~nGIaeLLeIlg 274 (402)
+.......++...+..|+.++.++|+.-|...-..|..+-......|..+. .-.-..+.+++... ...-.......++
T Consensus 43 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~ 121 (210)
T 4db6_A 43 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALS 121 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHH
Confidence 445555666667889999999999999999999888877533333333322 11223444544322 2222334556666
Q ss_pred HHHhc
Q 015699 275 SIISG 279 (402)
Q Consensus 275 SIInG 279 (402)
.+..+
T Consensus 122 ~l~~~ 126 (210)
T 4db6_A 122 NIASG 126 (210)
T ss_dssp HHTTS
T ss_pred HHHcC
Confidence 55543
No 53
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=20.32 E-value=6.3e+02 Score=24.93 Aligned_cols=108 Identities=13% Similarity=0.050 Sum_probs=62.7
Q ss_pred ChHHHhhhcCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhhhhHHHHHH-HHHHHhHhhhcccCCcchHH----HH
Q 015699 196 DVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQA-VCNIIYRFVFETERHNGIAE----LL 270 (402)
Q Consensus 196 d~k~ak~~id~~Fi~~Ll~lf~S~DprERd~LktiLhrIY~Kf~~~R~~IRk~-i~nif~~fi~e~e~~nGIae----LL 270 (402)
+....+..++..-|-.|+.++.|+|+.-|+..-..|..|-+.-...|..|... +-..+...+........... +.
T Consensus 151 ~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~ 230 (529)
T 3tpo_A 151 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 230 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHH
Confidence 44445566777788999999999999999999999988876656666665432 23445555543322222222 33
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHhhccCCCC
Q 015699 271 EIFGSIISGFALPLKEEHKIFLCRALIPLHKPK 303 (402)
Q Consensus 271 eIlgSIInGFa~PLKeEhk~fl~~vLlPLHk~~ 303 (402)
..+..+..+-..........=...+|..|....
T Consensus 231 ~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~ 263 (529)
T 3tpo_A 231 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 263 (529)
T ss_dssp HHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC
Confidence 444444444333333233232344555555544
No 54
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=20.05 E-value=3e+02 Score=31.07 Aligned_cols=175 Identities=11% Similarity=0.084 Sum_probs=84.9
Q ss_pred cCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhHhhhcc----cCCcchHHHHHHHHHHHhc
Q 015699 204 VDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFET----ERHNGIAELLEIFGSIISG 279 (402)
Q Consensus 204 id~~Fi~~Ll~lf~S~DprERd~LktiLhrIY~Kf~~~R~~IRk~i~nif~~fi~e~----e~~nGIaeLLeIlgSIInG 279 (402)
+|-.-+.+++..+.++|+.+|......|..+-. .-.... ....++..+ -+|. .+.+|...|+.
T Consensus 25 ~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~----sp~aw~-----~~~~iL~~s~~~~vR~f----Aa~~L~~~I~~ 91 (1073)
T 3gjx_A 25 LDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKE----HPDAWT-----RVDTILEFSQNMNTKYY----GLQILENVIKT 91 (1073)
T ss_dssp CSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSC----CSCHHH-----HHTCC---CCSHHHHHH----HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc----CchHHH-----HHHHHhcCCCCHHHHHH----HHHHHHHHHHh
Confidence 566778888888888899999888888854332 111111 111111111 0111 23444444442
Q ss_pred cCCCchHHHHHHHHHHhhccCCC----C----CcccchhhHHHHHHHHHhcC-CCcHHHHHHHhhccCCCCCchhHHHHH
Q 015699 280 FALPLKEEHKIFLCRALIPLHKP----K----SVGIYHQQLTYCVVQFIDKD-PKLATNAIKGLLKYWPVTNSQKELMFI 350 (402)
Q Consensus 280 Fa~PLKeEhk~fl~~vLlPLHk~----~----~l~~y~~qL~yci~qfieKD-p~L~~~vi~~LLk~WP~tns~KEvlFL 350 (402)
--..|.++.+..++..|+.+... + .-..|-.+|+.+++..+..+ |.-=...+..++..|. ++...-..+|
T Consensus 92 ~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~-~~~~~~~~~L 170 (1073)
T 3gjx_A 92 RWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASR-TSESLCQNNM 170 (1073)
T ss_dssp TGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHH-HCHHHHHHHH
T ss_pred hhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhC-CCHHHHHHHH
Confidence 22246677777777777766532 1 11345577877777766443 1111222222333332 2333222333
Q ss_pred HHHHHHHhc--------CCh-------HHHHHHHHHHHHHHHHhhCC-CcHHHHHHHH
Q 015699 351 SELEEVLEM--------TSM-------AEFQKIMVPLFRRIGCCLNS-SHYQVYFLFI 392 (402)
Q Consensus 351 ~EleeiLe~--------~~~-------~ef~~i~~plf~~la~ci~S-~hfqVAErAL 392 (402)
.-|..+-|. ++. +.+......++..+..|+.+ .+.+++..+|
T Consensus 171 ~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L 228 (1073)
T 3gjx_A 171 VILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATL 228 (1073)
T ss_dssp HHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 333333322 111 12333445566666677743 5667666543
Done!