Query 015700
Match_columns 402
No_of_seqs 333 out of 1487
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 08:45:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015700.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015700hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00601 rad23 UV excision re 100.0 3.8E-93 8.2E-98 716.8 39.1 363 1-399 1-378 (378)
2 KOG0011 Nucleotide excision re 100.0 7.7E-94 1.7E-98 691.9 32.6 339 1-400 1-340 (340)
3 PF09280 XPC-binding: XPC-bind 99.8 2.5E-20 5.4E-25 140.8 6.5 58 277-334 1-58 (59)
4 cd01807 GDX_N ubiquitin-like d 99.8 2.4E-18 5.2E-23 135.8 9.2 73 1-76 1-73 (74)
5 cd01805 RAD23_N Ubiquitin-like 99.7 7.9E-18 1.7E-22 133.2 10.0 75 1-78 1-77 (77)
6 cd01797 NIRF_N amino-terminal 99.7 1.1E-17 2.4E-22 133.7 9.1 73 1-76 1-75 (78)
7 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 1.6E-17 3.4E-22 131.2 8.4 71 1-74 2-72 (73)
8 cd01793 Fubi Fubi ubiquitin-li 99.7 3.5E-17 7.5E-22 129.2 9.2 73 1-78 1-73 (74)
9 PTZ00044 ubiquitin; Provisiona 99.7 4.1E-17 8.9E-22 128.9 9.4 75 1-78 1-75 (76)
10 cd01804 midnolin_N Ubiquitin-l 99.7 6.4E-17 1.4E-21 129.2 8.9 73 1-77 2-74 (78)
11 cd01802 AN1_N ubiquitin-like d 99.7 6.7E-17 1.5E-21 135.9 9.4 75 1-78 28-102 (103)
12 KOG0010 Ubiquitin-like protein 99.7 1.9E-16 4.2E-21 161.5 14.4 76 1-80 16-91 (493)
13 cd01806 Nedd8 Nebb8-like ubiq 99.7 1.7E-16 3.8E-21 124.7 10.0 74 1-77 1-74 (76)
14 cd01792 ISG15_repeat1 ISG15 ub 99.7 8.5E-17 1.9E-21 128.9 8.2 74 1-77 3-78 (80)
15 cd01810 ISG15_repeat2 ISG15 ub 99.7 1.5E-16 3.1E-21 125.6 8.7 72 3-77 1-72 (74)
16 cd01803 Ubiquitin Ubiquitin. U 99.7 2E-16 4.4E-21 124.3 9.3 75 1-78 1-75 (76)
17 cd01794 DC_UbP_C dendritic cel 99.7 1.5E-16 3.3E-21 124.6 7.8 70 3-75 1-70 (70)
18 cd01809 Scythe_N Ubiquitin-lik 99.7 3.2E-16 7E-21 121.9 9.2 72 1-75 1-72 (72)
19 cd01798 parkin_N amino-termina 99.7 2.4E-16 5.2E-21 122.9 7.9 70 3-75 1-70 (70)
20 cd01790 Herp_N Homocysteine-re 99.7 2.7E-16 5.8E-21 125.8 8.2 73 1-74 2-78 (79)
21 cd01808 hPLIC_N Ubiquitin-like 99.6 5.4E-16 1.2E-20 121.3 8.6 71 1-75 1-71 (71)
22 PF00240 ubiquitin: Ubiquitin 99.6 6.3E-16 1.4E-20 119.6 7.9 69 6-77 1-69 (69)
23 cd01813 UBP_N UBP ubiquitin pr 99.6 1.2E-15 2.6E-20 120.8 8.1 70 1-74 1-73 (74)
24 cd01796 DDI1_N DNA damage indu 99.6 2.7E-15 5.8E-20 117.7 7.5 68 3-73 1-70 (71)
25 cd01812 BAG1_N Ubiquitin-like 99.6 1E-14 2.2E-19 113.4 8.2 70 1-74 1-70 (71)
26 KOG0005 Ubiquitin-like protein 99.6 4.7E-15 1E-19 110.4 5.1 70 1-73 1-70 (70)
27 cd01800 SF3a120_C Ubiquitin-li 99.5 1.6E-14 3.4E-19 114.7 8.2 68 8-78 5-72 (76)
28 smart00213 UBQ Ubiquitin homol 99.4 2.6E-13 5.5E-18 102.5 7.7 64 1-68 1-64 (64)
29 cd01763 Sumo Small ubiquitin-r 99.4 6.3E-13 1.4E-17 108.3 9.9 75 1-78 12-86 (87)
30 KOG0003 Ubiquitin/60s ribosoma 99.4 1.6E-14 3.5E-19 119.6 0.3 77 1-80 1-77 (128)
31 KOG0004 Ubiquitin/40S ribosoma 99.4 1.4E-13 3E-18 121.6 5.2 79 1-82 1-79 (156)
32 cd01815 BMSC_UbP_N Ubiquitin-l 99.4 3.1E-13 6.6E-18 106.9 5.5 56 19-75 19-75 (75)
33 cd01814 NTGP5 Ubiquitin-like N 99.3 3.2E-12 6.9E-17 107.9 7.0 77 2-78 6-93 (113)
34 cd01769 UBL Ubiquitin-like dom 99.3 9.3E-12 2E-16 95.2 7.9 68 4-74 1-68 (69)
35 cd01799 Hoil1_N Ubiquitin-like 99.3 1E-11 2.2E-16 98.6 7.5 65 6-74 8-74 (75)
36 PF11976 Rad60-SLD: Ubiquitin- 99.2 8E-11 1.7E-15 91.9 8.2 71 1-74 1-72 (72)
37 cd01795 USP48_C USP ubiquitin- 99.0 6E-10 1.3E-14 91.9 7.3 63 12-77 16-79 (107)
38 PF00627 UBA: UBA/TS-N domain; 98.9 1.9E-09 4.1E-14 74.0 5.1 36 172-210 2-37 (37)
39 PF13881 Rad60-SLD_2: Ubiquiti 98.9 9.7E-09 2.1E-13 87.6 10.0 74 2-75 4-88 (111)
40 KOG4248 Ubiquitin-like protein 98.9 2.4E-09 5.1E-14 117.4 6.8 70 2-75 4-73 (1143)
41 cd01789 Alp11_N Ubiquitin-like 98.9 9.6E-09 2.1E-13 83.2 8.7 71 2-75 3-81 (84)
42 KOG0001 Ubiquitin and ubiquiti 98.9 2.2E-08 4.7E-13 76.0 9.5 72 3-77 2-73 (75)
43 PLN02560 enoyl-CoA reductase 98.8 1.3E-08 2.8E-13 101.2 8.5 71 1-73 1-81 (308)
44 cd01788 ElonginB Ubiquitin-lik 98.7 4.5E-08 9.8E-13 82.7 7.6 73 1-76 1-81 (119)
45 cd01801 Tsc13_N Ubiquitin-like 98.7 4.4E-08 9.6E-13 77.9 7.0 70 1-72 1-74 (77)
46 cd00194 UBA Ubiquitin Associat 98.7 3.4E-08 7.5E-13 67.8 5.2 37 359-395 2-38 (38)
47 PF14560 Ubiquitin_2: Ubiquiti 98.7 8E-08 1.7E-12 78.1 8.1 72 2-76 3-84 (87)
48 PF00627 UBA: UBA/TS-N domain; 98.7 3.6E-08 7.7E-13 67.7 5.1 36 358-393 2-37 (37)
49 cd00194 UBA Ubiquitin Associat 98.7 3.8E-08 8.2E-13 67.6 5.1 37 173-212 2-38 (38)
50 smart00165 UBA Ubiquitin assoc 98.6 5.1E-08 1.1E-12 66.6 4.8 36 359-394 2-37 (37)
51 smart00165 UBA Ubiquitin assoc 98.6 5.1E-08 1.1E-12 66.6 4.6 36 173-211 2-37 (37)
52 cd00196 UBQ Ubiquitin-like pro 98.4 1.1E-06 2.5E-11 62.9 7.7 67 5-74 2-68 (69)
53 PF11543 UN_NPL4: Nuclear pore 98.4 4.9E-07 1.1E-11 72.7 5.8 69 1-73 5-78 (80)
54 cd01811 OASL_repeat1 2'-5' oli 98.3 3.7E-06 8.1E-11 66.0 8.3 72 1-76 1-77 (80)
55 KOG1872 Ubiquitin-specific pro 98.1 5.5E-06 1.2E-10 85.1 7.7 72 2-77 5-77 (473)
56 KOG3493 Ubiquitin-like protein 98.0 2.3E-06 4.9E-11 65.3 1.6 69 2-73 3-71 (73)
57 KOG0006 E3 ubiquitin-protein l 98.0 8.2E-06 1.8E-10 80.0 5.8 73 1-76 1-76 (446)
58 KOG2561 Adaptor protein NUB1, 97.5 0.001 2.2E-08 68.5 12.0 59 14-75 53-111 (568)
59 PF10302 DUF2407: DUF2407 ubiq 97.5 0.0003 6.5E-09 58.7 6.3 60 2-62 2-64 (97)
60 KOG4495 RNA polymerase II tran 97.4 0.00051 1.1E-08 56.6 7.0 62 1-65 1-65 (110)
61 KOG1769 Ubiquitin-like protein 97.4 0.00089 1.9E-08 55.6 8.5 72 2-76 22-93 (99)
62 PF08817 YukD: WXG100 protein 97.2 0.00083 1.8E-08 53.6 5.8 71 2-72 4-78 (79)
63 TIGR00601 rad23 UV excision re 97.2 0.00044 9.5E-09 70.9 5.3 41 357-397 155-195 (378)
64 COG5417 Uncharacterized small 97.1 0.0019 4.1E-08 50.9 6.8 71 2-72 6-80 (81)
65 smart00166 UBX Domain present 97.1 0.0038 8.3E-08 49.8 8.5 68 2-72 6-78 (80)
66 PF00789 UBX: UBX domain; Int 97.1 0.0038 8.2E-08 49.7 8.5 69 2-73 8-81 (82)
67 KOG4583 Membrane-associated ER 97.0 7.6E-05 1.7E-09 73.9 -2.6 76 2-78 11-90 (391)
68 cd01767 UBX UBX (ubiquitin reg 96.9 0.0067 1.5E-07 47.9 8.8 67 2-73 4-75 (77)
69 KOG1639 Steroid reductase requ 96.9 0.002 4.3E-08 61.8 6.3 70 1-72 1-76 (297)
70 KOG0013 Uncharacterized conser 96.8 0.0019 4.2E-08 60.4 5.6 64 9-75 155-220 (231)
71 PF02845 CUE: CUE domain; Int 96.8 0.0019 4.2E-08 45.3 4.3 41 172-213 1-41 (42)
72 cd01770 p47_UBX p47-like ubiqu 96.8 0.0097 2.1E-07 47.7 8.5 67 2-71 6-75 (79)
73 cd01772 SAKS1_UBX SAKS1-like U 96.8 0.01 2.2E-07 47.4 8.7 67 2-72 6-77 (79)
74 KOG0418 Ubiquitin-protein liga 96.5 0.0041 8.8E-08 57.2 5.3 94 288-396 104-200 (200)
75 cd01773 Faf1_like1_UBX Faf1 ik 96.4 0.028 6E-07 45.5 8.8 69 2-74 7-80 (82)
76 PF11470 TUG-UBL1: GLUT4 regul 96.3 0.017 3.8E-07 44.6 6.8 63 7-72 3-65 (65)
77 KOG0944 Ubiquitin-specific pro 96.2 0.0028 6E-08 68.1 2.7 43 170-215 633-675 (763)
78 smart00727 STI1 Heat shock cha 96.0 0.0074 1.6E-07 41.9 3.2 36 278-318 6-41 (41)
79 COG5207 UBP14 Isopeptidase T [ 95.9 0.0087 1.9E-07 62.7 4.7 43 359-401 559-602 (749)
80 KOG0010 Ubiquitin-like protein 95.9 0.028 6.1E-07 58.8 8.0 45 351-395 445-492 (493)
81 KOG0418 Ubiquitin-protein liga 95.9 0.011 2.4E-07 54.5 4.5 46 165-213 155-200 (200)
82 PF13019 Telomere_Sde2: Telome 95.9 0.064 1.4E-06 48.7 9.3 75 1-78 1-87 (162)
83 cd01774 Faf1_like2_UBX Faf1 ik 95.8 0.066 1.4E-06 43.5 8.5 68 2-73 6-83 (85)
84 cd01771 Faf1_UBX Faf1 UBX doma 95.7 0.086 1.9E-06 42.3 8.5 68 2-73 6-78 (80)
85 smart00546 CUE Domain that may 95.5 0.039 8.5E-07 38.7 5.2 39 172-213 2-42 (43)
86 PF02845 CUE: CUE domain; Int 95.4 0.037 8.1E-07 38.7 4.9 37 360-396 3-41 (42)
87 KOG0944 Ubiquitin-specific pro 95.3 0.023 5E-07 61.3 5.1 45 357-401 570-615 (763)
88 COG5227 SMT3 Ubiquitin-like pr 95.3 0.066 1.4E-06 43.9 6.5 69 3-74 27-95 (103)
89 KOG3206 Alpha-tubulin folding 95.1 0.053 1.1E-06 50.9 6.3 70 2-74 3-80 (234)
90 PF14555 UBA_4: UBA-like domai 95.1 0.06 1.3E-06 38.0 5.1 40 360-399 2-42 (43)
91 KOG0011 Nucleotide excision re 94.5 0.052 1.1E-06 54.2 5.0 42 358-399 135-176 (340)
92 PF09288 UBA_3: Fungal ubiquit 93.9 0.049 1.1E-06 40.7 2.6 38 358-395 9-51 (55)
93 PF15044 CLU_N: Mitochondrial 93.9 0.093 2E-06 41.7 4.3 56 17-74 1-57 (76)
94 smart00546 CUE Domain that may 93.7 0.19 4E-06 35.3 5.1 37 360-396 4-42 (43)
95 PRK06437 hypothetical protein; 92.8 0.69 1.5E-05 35.8 7.6 58 5-74 5-62 (67)
96 PF14453 ThiS-like: ThiS-like 92.6 0.37 7.9E-06 36.4 5.5 56 1-75 1-56 (57)
97 PF09288 UBA_3: Fungal ubiquit 92.5 0.14 3.1E-06 38.2 3.1 23 173-198 10-32 (55)
98 PLN02799 Molybdopterin synthas 92.1 0.65 1.4E-05 36.9 6.9 66 1-73 2-76 (82)
99 PF11626 Rap1_C: TRF2-interact 91.9 0.29 6.3E-06 39.8 4.7 35 176-213 1-35 (87)
100 cd00754 MoaD Ubiquitin domain 91.9 0.73 1.6E-05 36.0 6.8 57 12-73 17-74 (80)
101 PF09379 FERM_N: FERM N-termin 91.6 1 2.2E-05 35.2 7.3 58 5-65 1-65 (80)
102 KOG0012 DNA damage inducible p 91.5 0.27 5.9E-06 49.7 4.9 70 1-73 1-74 (380)
103 PF11626 Rap1_C: TRF2-interact 91.3 0.28 6.1E-06 39.9 4.0 35 362-396 1-35 (87)
104 PF06972 DUF1296: Protein of u 90.5 0.83 1.8E-05 34.6 5.4 41 172-213 5-45 (60)
105 PF07499 RuvA_C: RuvA, C-termi 90.3 0.38 8.2E-06 34.6 3.5 37 172-211 3-39 (47)
106 PRK08364 sulfur carrier protei 89.7 2.2 4.7E-05 33.1 7.6 50 12-73 15-64 (70)
107 cd06406 PB1_P67 A PB1 domain i 89.4 1.1 2.5E-05 36.0 5.8 36 12-50 12-47 (80)
108 cd07922 CarBa CarBa is the A s 88.6 3.5 7.7E-05 33.3 8.2 64 300-389 6-74 (81)
109 PRK06488 sulfur carrier protei 88.5 1.8 3.8E-05 32.9 6.2 60 1-74 1-60 (65)
110 PF14836 Ubiquitin_3: Ubiquiti 88.0 2.5 5.3E-05 34.7 7.0 63 10-76 13-81 (88)
111 PF12754 Blt1: Cell-cycle cont 87.8 0.16 3.4E-06 50.6 0.0 60 2-64 80-159 (309)
112 TIGR01687 moaD_arch MoaD famil 87.5 3.1 6.7E-05 33.3 7.4 59 11-73 16-82 (88)
113 smart00295 B41 Band 4.1 homolo 85.8 7 0.00015 35.5 9.8 61 2-65 5-72 (207)
114 cd06409 PB1_MUG70 The MUG70 pr 85.5 2.7 5.9E-05 34.3 6.0 74 2-75 2-84 (86)
115 cd06407 PB1_NLP A PB1 domain i 85.3 5.7 0.00012 32.0 7.8 70 1-74 1-80 (82)
116 PF10790 DUF2604: Protein of U 84.5 4.5 9.7E-05 31.3 6.3 67 9-75 4-71 (76)
117 TIGR01682 moaD molybdopterin c 84.0 5.4 0.00012 31.4 7.1 55 12-73 17-74 (80)
118 KOG2561 Adaptor protein NUB1, 83.7 1.4 3E-05 46.1 4.4 41 173-216 430-470 (568)
119 PF11069 DUF2870: Protein of u 83.7 1.7 3.7E-05 36.3 4.1 34 45-78 3-37 (98)
120 PF02597 ThiS: ThiS family; I 83.6 3.7 8E-05 31.6 5.9 60 12-74 13-72 (77)
121 KOG2086 Protein tyrosine phosp 83.1 2.1 4.5E-05 43.9 5.3 65 2-68 307-374 (380)
122 PF14555 UBA_4: UBA-like domai 82.4 3.9 8.5E-05 28.6 5.1 37 173-212 1-38 (43)
123 PF10209 DUF2340: Uncharacteri 81.3 5.7 0.00012 34.5 6.6 60 16-75 21-108 (122)
124 PRK05863 sulfur carrier protei 81.0 5.9 0.00013 30.2 6.0 60 1-74 1-60 (65)
125 PF11620 GABP-alpha: GA-bindin 80.7 4.2 9.1E-05 33.2 5.2 62 12-76 4-65 (88)
126 smart00666 PB1 PB1 domain. Pho 80.5 7.7 0.00017 30.3 6.8 45 2-50 3-47 (81)
127 smart00727 STI1 Heat shock cha 80.4 3.1 6.7E-05 28.6 3.9 32 289-323 4-36 (41)
128 cd01760 RBD Ubiquitin-like dom 79.9 8 0.00017 30.5 6.5 52 3-57 2-57 (72)
129 PRK05659 sulfur carrier protei 79.3 8.5 0.00019 29.0 6.4 61 1-74 1-61 (66)
130 KOG2982 Uncharacterized conser 77.1 2.4 5.3E-05 42.6 3.5 55 16-73 353-415 (418)
131 PF11547 E3_UbLigase_EDD: E3 u 76.5 5.6 0.00012 29.0 4.3 35 362-396 13-49 (53)
132 cd06408 PB1_NoxR The PB1 domai 76.4 11 0.00023 30.9 6.5 46 2-51 2-48 (86)
133 PRK06944 sulfur carrier protei 75.7 15 0.00033 27.4 6.9 60 1-74 1-60 (65)
134 smart00455 RBD Raf-like Ras-bi 74.5 9 0.00019 29.9 5.4 49 3-54 2-52 (70)
135 PF08938 HBS1_N: HBS1 N-termin 74.2 1.3 2.7E-05 35.4 0.5 26 188-213 45-70 (79)
136 COG2104 ThiS Sulfur transfer p 73.7 16 0.00035 28.4 6.6 63 1-74 1-63 (68)
137 COG5207 UBP14 Isopeptidase T [ 73.0 4.9 0.00011 42.8 4.6 39 173-214 559-598 (749)
138 PF14732 UAE_UbL: Ubiquitin/SU 73.0 6.9 0.00015 31.9 4.6 52 19-73 7-67 (87)
139 PF09280 XPC-binding: XPC-bind 72.8 2.3 4.9E-05 32.3 1.6 37 279-320 16-55 (59)
140 PRK08053 sulfur carrier protei 72.5 19 0.00041 27.4 6.7 61 1-74 1-61 (66)
141 PLN03196 MOC1-like protein; Pr 71.7 19 0.00041 38.4 8.8 33 350-382 258-292 (487)
142 COG5100 NPL4 Nuclear pore prot 71.5 14 0.00031 38.3 7.4 73 1-75 1-79 (571)
143 PF06972 DUF1296: Protein of u 71.0 11 0.00025 28.6 5.0 38 359-396 6-45 (60)
144 PRK07696 sulfur carrier protei 70.8 19 0.00042 27.6 6.5 61 1-74 1-62 (67)
145 cd00565 ThiS ThiaminS ubiquiti 70.4 16 0.00035 27.6 5.9 57 8-74 4-60 (65)
146 PF07223 DUF1421: Protein of u 68.9 5.2 0.00011 41.0 3.7 30 165-197 314-343 (358)
147 PF10407 Cytokin_check_N: Cdc1 68.9 16 0.00034 29.0 5.6 63 11-76 3-71 (73)
148 TIGR02958 sec_mycoba_snm4 secr 68.6 32 0.00068 36.4 9.6 73 2-75 4-80 (452)
149 cd01787 GRB7_RA RA (RAS-associ 68.3 36 0.00077 27.8 7.7 67 3-71 5-81 (85)
150 PF08337 Plexin_cytopl: Plexin 67.9 9 0.0002 41.3 5.4 65 11-76 202-290 (539)
151 cd05992 PB1 The PB1 domain is 67.1 21 0.00045 27.6 6.1 45 2-50 2-47 (81)
152 PRK06083 sulfur carrier protei 66.9 24 0.00052 28.6 6.5 57 8-74 23-79 (84)
153 PRK07440 hypothetical protein; 66.4 27 0.00059 27.1 6.5 57 8-74 9-65 (70)
154 PF11333 DUF3135: Protein of u 66.3 5.5 0.00012 32.3 2.6 28 282-309 2-29 (83)
155 PLN03196 MOC1-like protein; Pr 66.1 57 0.0012 34.8 11.0 42 172-216 196-246 (487)
156 cd01611 GABARAP Ubiquitin doma 65.9 32 0.00069 29.4 7.4 59 15-76 45-107 (112)
157 PF00564 PB1: PB1 domain; Int 65.9 21 0.00045 27.9 5.9 45 2-50 3-48 (84)
158 COG5272 UBI4 Ubiquitin [Posttr 65.1 2 4.2E-05 32.1 -0.2 47 352-399 6-52 (57)
159 PF07499 RuvA_C: RuvA, C-termi 64.5 5.1 0.00011 28.6 1.9 27 359-385 4-30 (47)
160 PF07746 LigA: Aromatic-ring-o 63.9 20 0.00043 29.4 5.5 45 300-369 1-50 (88)
161 PF02196 RBD: Raf-like Ras-bin 63.0 43 0.00093 26.1 7.1 56 3-61 3-60 (71)
162 PTZ00380 microtubule-associate 62.5 20 0.00043 31.2 5.5 57 16-75 46-105 (121)
163 PF08938 HBS1_N: HBS1 N-termin 62.4 6.2 0.00013 31.4 2.3 45 352-396 18-70 (79)
164 TIGR01683 thiS thiamine biosyn 61.8 28 0.0006 26.2 5.7 57 8-74 3-59 (64)
165 KOG4250 TANK binding protein k 61.6 24 0.00052 39.2 7.2 70 3-77 316-388 (732)
166 KOG2507 Ubiquitin regulatory p 61.5 15 0.00033 38.3 5.4 73 2-77 316-393 (506)
167 cd06411 PB1_p51 The PB1 domain 60.3 32 0.0007 27.6 5.9 35 12-49 8-42 (78)
168 PRK11130 moaD molybdopterin sy 60.2 78 0.0017 24.9 8.3 54 15-73 19-75 (81)
169 PF02991 Atg8: Autophagy prote 60.0 37 0.0008 28.7 6.6 62 9-75 33-98 (104)
170 PF08825 E2_bind: E2 binding d 59.5 13 0.00029 30.1 3.8 58 15-73 1-69 (84)
171 PF14533 USP7_C2: Ubiquitin-sp 59.3 37 0.0008 32.1 7.3 48 12-62 35-90 (213)
172 PF12053 DUF3534: Domain of un 59.2 63 0.0014 29.0 8.3 74 1-76 1-81 (145)
173 cd07321 Extradiol_Dioxygenase_ 59.0 80 0.0017 25.1 8.1 46 303-372 8-58 (77)
174 KOG1364 Predicted ubiquitin re 58.8 10 0.00022 38.6 3.5 66 2-69 279-349 (356)
175 PRK11840 bifunctional sulfur c 58.3 27 0.00059 35.4 6.5 62 1-75 1-62 (326)
176 PRK12332 tsf elongation factor 57.3 18 0.00038 34.1 4.7 36 174-212 6-42 (198)
177 cd01768 RA RA (Ras-associating 56.9 94 0.002 24.4 8.8 65 10-75 12-85 (87)
178 KOG2689 Predicted ubiquitin re 56.4 35 0.00075 33.7 6.6 70 2-72 212-284 (290)
179 cd07921 PCA_45_Doxase_A_like S 55.9 37 0.0008 28.9 5.9 45 300-369 16-65 (106)
180 smart00144 PI3K_rbd PI3-kinase 55.6 71 0.0015 26.9 7.7 74 3-76 20-105 (108)
181 cd06398 PB1_Joka2 The PB1 doma 55.5 62 0.0013 26.6 7.1 69 3-75 3-87 (91)
182 PF07462 MSP1_C: Merozoite sur 55.3 23 0.00051 38.0 5.6 9 324-332 416-424 (574)
183 PF00788 RA: Ras association ( 55.2 86 0.0019 24.5 7.9 52 3-57 5-68 (93)
184 TIGR00116 tsf translation elon 55.1 19 0.0004 36.0 4.7 36 174-212 6-42 (290)
185 TIGR00264 alpha-NAC-related pr 53.2 30 0.00065 29.9 5.0 39 353-394 76-115 (116)
186 PF14451 Ub-Mut7C: Mut7-C ubiq 52.7 51 0.0011 26.5 6.1 53 10-74 22-75 (81)
187 PF00794 PI3K_rbd: PI3-kinase 52.3 50 0.0011 27.4 6.3 74 2-76 18-103 (106)
188 PF08587 UBA_2: Ubiquitin asso 51.4 3.7 7.9E-05 29.7 -0.7 20 176-198 6-26 (46)
189 cd01612 APG12_C Ubiquitin-like 50.7 1.4E+02 0.0029 24.3 8.6 60 14-76 19-82 (87)
190 PF13556 HTH_30: PucR C-termin 49.8 18 0.00039 26.9 2.9 23 374-396 3-25 (59)
191 cd06396 PB1_NBR1 The PB1 domai 49.7 67 0.0015 26.0 6.3 35 2-40 2-38 (81)
192 PF15652 Tox-SHH: HNH/Endo VII 49.3 25 0.00053 29.6 3.8 30 169-201 68-97 (100)
193 CHL00098 tsf elongation factor 49.2 28 0.00061 32.8 4.7 36 174-212 3-39 (200)
194 PF07862 Nif11: Nitrogen fixat 48.8 29 0.00062 24.7 3.7 32 300-332 6-39 (49)
195 PRK06369 nac nascent polypepti 48.8 40 0.00086 29.1 5.1 37 173-212 77-114 (115)
196 PF09722 DUF2384: Protein of u 48.6 42 0.00092 24.3 4.7 20 194-213 2-21 (54)
197 PF02954 HTH_8: Bacterial regu 48.3 17 0.00037 25.1 2.4 27 187-215 5-31 (42)
198 PRK09377 tsf elongation factor 48.3 28 0.0006 34.7 4.7 36 174-212 7-43 (290)
199 PRK13901 ruvA Holliday junctio 47.9 25 0.00055 33.0 4.1 29 171-202 143-171 (196)
200 PF02954 HTH_8: Bacterial regu 47.2 16 0.00034 25.3 2.0 24 370-393 5-28 (42)
201 PRK06369 nac nascent polypepti 45.8 45 0.00098 28.8 5.0 41 352-395 73-114 (115)
202 KOG3391 Transcriptional co-rep 45.3 23 0.00049 31.5 3.1 63 19-81 60-142 (151)
203 TIGR00084 ruvA Holliday juncti 44.4 24 0.00053 32.9 3.4 29 171-202 146-174 (191)
204 PF07462 MSP1_C: Merozoite sur 40.7 1.1E+02 0.0024 33.1 7.9 20 164-183 350-369 (574)
205 PF12616 DUF3775: Protein of u 40.6 56 0.0012 26.0 4.5 41 174-215 19-60 (75)
206 cd01764 Urm1 Urm1-like ubuitin 40.5 47 0.001 27.3 4.2 55 15-74 23-89 (94)
207 KOG3439 Protein conjugation fa 39.9 77 0.0017 27.2 5.4 38 13-53 47-84 (116)
208 PF14327 CSTF2_hinge: Hinge do 39.8 27 0.00059 28.1 2.6 28 287-318 36-63 (84)
209 PRK14602 ruvA Holliday junctio 38.8 34 0.00073 32.3 3.5 27 171-200 154-180 (203)
210 PF12436 USP7_ICP0_bdg: ICP0-b 38.6 48 0.001 32.1 4.6 71 3-76 71-153 (249)
211 cd07923 Gallate_dioxygenase_C 38.5 1E+02 0.0022 25.6 5.8 45 300-369 8-57 (94)
212 cd06410 PB1_UP2 Uncharacterize 38.2 1.1E+02 0.0024 25.4 6.1 40 5-48 17-56 (97)
213 PF02017 CIDE-N: CIDE-N domain 36.9 95 0.0021 24.9 5.2 63 4-75 6-71 (78)
214 cd01817 RGS12_RBD Ubiquitin do 35.8 1.2E+02 0.0025 24.2 5.5 43 5-50 4-46 (73)
215 TIGR00264 alpha-NAC-related pr 35.4 77 0.0017 27.4 4.8 36 173-211 79-115 (116)
216 COG0632 RuvA Holliday junction 34.8 41 0.00089 31.8 3.4 34 172-208 156-190 (201)
217 PF09494 Slx4: Slx4 endonuclea 34.8 25 0.00055 26.8 1.6 19 286-304 2-20 (64)
218 PRK08769 DNA polymerase III su 34.5 73 0.0016 32.1 5.3 41 170-213 172-212 (319)
219 KOG2689 Predicted ubiquitin re 34.4 63 0.0014 32.0 4.6 34 177-213 5-40 (290)
220 COG3760 Uncharacterized conser 34.4 61 0.0013 29.3 4.1 59 2-73 47-105 (164)
221 KOG4572 Predicted DNA-binding 34.3 74 0.0016 36.1 5.5 64 9-75 3-70 (1424)
222 PRK14606 ruvA Holliday junctio 33.7 53 0.0012 30.6 3.9 28 171-201 142-169 (188)
223 PF14551 MCM_N: MCM N-terminal 33.3 20 0.00042 29.8 0.9 54 278-331 7-64 (121)
224 PF02505 MCR_D: Methyl-coenzym 32.7 86 0.0019 28.4 4.8 48 12-67 76-124 (153)
225 TIGR03798 ocin_TIGR03798 bacte 32.2 80 0.0017 23.9 4.0 31 301-332 5-37 (64)
226 PHA02564 V virion protein; Pro 32.0 70 0.0015 28.6 4.2 31 171-201 109-141 (141)
227 PRK01777 hypothetical protein; 31.5 2.1E+02 0.0045 23.7 6.7 63 1-75 4-76 (95)
228 PF08783 DWNN: DWNN domain; I 31.4 93 0.002 24.7 4.3 33 3-35 1-35 (74)
229 PF07939 DUF1685: Protein of u 31.3 36 0.00078 26.3 1.9 31 354-384 1-43 (64)
230 PRK14604 ruvA Holliday junctio 31.0 51 0.0011 30.9 3.3 28 172-202 149-176 (195)
231 TIGR03260 met_CoM_red_D methyl 31.0 93 0.002 28.1 4.7 43 13-62 76-118 (150)
232 cd01775 CYR1_RA Ubiquitin doma 31.0 2.3E+02 0.0049 23.8 6.7 68 3-73 5-85 (97)
233 PF09469 Cobl: Cordon-bleu ubi 30.7 72 0.0016 25.7 3.6 42 29-76 2-46 (79)
234 KOG4842 Protein involved in si 30.4 14 0.00029 36.2 -0.6 60 9-72 11-70 (278)
235 COG2080 CoxS Aerobic-type carb 30.3 1.2E+02 0.0026 27.6 5.4 70 1-73 2-75 (156)
236 PF11816 DUF3337: Domain of un 30.3 1.7E+02 0.0037 29.5 7.2 64 14-77 251-329 (331)
237 PF04126 Cyclophil_like: Cyclo 30.1 31 0.00068 29.6 1.6 29 1-30 1-29 (120)
238 PRK14600 ruvA Holliday junctio 29.7 63 0.0014 30.1 3.7 27 171-200 144-170 (186)
239 PF02824 TGS: TGS domain; Int 29.4 1.5E+02 0.0032 22.0 5.1 59 3-73 1-59 (60)
240 COG1308 EGD2 Transcription fac 29.1 1.2E+02 0.0027 26.4 5.0 39 352-393 81-120 (122)
241 PRK14603 ruvA Holliday junctio 28.6 66 0.0014 30.1 3.6 27 171-200 151-177 (197)
242 PF14847 Ras_bdg_2: Ras-bindin 28.4 1.6E+02 0.0034 24.9 5.5 57 3-62 3-70 (105)
243 PRK14601 ruvA Holliday junctio 28.2 69 0.0015 29.8 3.6 26 171-199 141-166 (183)
244 KOG4147 Uncharacterized conser 28.0 1.4E+02 0.0031 25.6 5.1 59 16-74 28-112 (127)
245 PF14327 CSTF2_hinge: Hinge do 27.9 48 0.001 26.7 2.2 22 287-308 47-68 (84)
246 PF14848 HU-DNA_bdg: DNA-bindi 27.7 1.4E+02 0.003 25.7 5.2 38 172-215 31-70 (124)
247 PF06755 DUF1219: Protein of u 27.5 60 0.0013 27.8 2.8 28 369-396 42-69 (114)
248 COG1026 Predicted Zn-dependent 27.5 1.5E+02 0.0033 34.4 6.8 39 273-312 410-448 (978)
249 PF06234 TmoB: Toluene-4-monoo 27.3 2.9E+02 0.0063 22.6 6.6 62 13-75 17-84 (85)
250 cd02667 Peptidase_C19K A subfa 27.2 77 0.0017 30.6 4.0 50 276-331 14-63 (279)
251 PRK07993 DNA polymerase III su 27.1 1.1E+02 0.0025 30.8 5.3 38 173-213 170-208 (334)
252 TIGR01446 DnaD_dom DnaD and ph 26.9 58 0.0012 24.9 2.5 33 353-385 12-45 (73)
253 COG0089 RplW Ribosomal protein 26.6 2.1E+02 0.0046 23.8 5.8 60 10-72 21-90 (94)
254 PF02961 BAF: Barrier to autoi 26.5 1.1E+02 0.0024 25.2 4.1 34 362-395 32-66 (89)
255 smart00266 CAD Domains present 26.2 2E+02 0.0043 22.9 5.4 38 21-61 19-58 (74)
256 KOG4146 Ubiquitin-like protein 26.2 3.9E+02 0.0084 22.4 7.1 55 19-77 34-99 (101)
257 PF14533 USP7_C2: Ubiquitin-sp 26.2 57 0.0012 30.8 2.8 51 10-63 132-194 (213)
258 PF14483 Cut8_M: Cut8 dimerisa 26.1 56 0.0012 22.5 2.0 22 298-319 13-34 (38)
259 PRK14109 bifunctional glutamin 26.0 3.7E+02 0.0079 31.6 9.7 40 291-331 78-117 (1007)
260 PF10440 WIYLD: Ubiquitin-bind 25.8 84 0.0018 24.4 3.1 21 359-379 12-32 (65)
261 PF00276 Ribosomal_L23: Riboso 25.8 1.2E+02 0.0026 24.7 4.3 41 11-54 21-62 (91)
262 KOG4598 Putative ubiquitin-spe 25.8 1.1E+02 0.0024 34.3 5.1 61 12-77 878-944 (1203)
263 PF13936 HTH_38: Helix-turn-he 25.8 44 0.00095 23.4 1.5 24 352-375 3-26 (44)
264 PF11834 DUF3354: Domain of un 25.7 92 0.002 24.4 3.4 43 21-73 26-69 (69)
265 PF07223 DUF1421: Protein of u 25.4 46 0.00099 34.2 2.1 18 360-377 323-340 (358)
266 PRK05738 rplW 50S ribosomal pr 25.2 1.7E+02 0.0037 24.0 5.0 40 10-52 20-60 (92)
267 COG3444 Phosphotransferase sys 25.2 1.2E+02 0.0025 27.8 4.4 52 318-370 82-138 (159)
268 PRK07570 succinate dehydrogena 24.8 2.2E+02 0.0047 27.7 6.6 24 11-34 20-44 (250)
269 COG4738 Predicted transcriptio 24.6 1E+02 0.0022 26.6 3.7 35 352-386 7-41 (124)
270 PF06006 DUF905: Bacterial pro 24.5 56 0.0012 25.7 1.9 19 184-203 5-23 (70)
271 PRK13901 ruvA Holliday junctio 24.0 90 0.0019 29.4 3.6 28 359-386 145-172 (196)
272 COG0264 Tsf Translation elonga 23.5 1.3E+02 0.0028 30.2 4.7 36 174-212 7-43 (296)
273 TIGR01589 A_thal_3526 uncharac 23.5 66 0.0014 24.3 2.1 23 295-317 31-53 (57)
274 cd06397 PB1_UP1 Uncharacterize 23.3 2.7E+02 0.0058 22.7 5.6 57 2-62 2-63 (82)
275 cd06539 CIDE_N_A CIDE_N domain 22.7 2.4E+02 0.0052 22.7 5.2 48 21-73 21-70 (78)
276 PF07261 DnaB_2: Replication i 22.1 34 0.00074 26.2 0.3 41 353-393 12-53 (77)
277 KOG4248 Ubiquitin-like protein 22.1 44 0.00095 38.7 1.3 66 6-74 330-395 (1143)
278 PRK09814 beta-1,6-galactofuran 22.1 98 0.0021 30.7 3.7 31 187-217 215-264 (333)
279 PF13974 YebO: YebO-like prote 22.0 1.2E+02 0.0026 24.5 3.5 34 288-321 18-53 (80)
280 PF09145 Ubiq-assoc: Ubiquitin 21.7 1.2E+02 0.0026 21.8 2.9 21 362-382 10-30 (46)
281 KOG0514 Ankyrin repeat protein 21.6 81 0.0018 32.7 2.9 34 355-388 316-368 (452)
282 cd01615 CIDE_N CIDE_N domain, 21.3 2.6E+02 0.0057 22.4 5.3 38 21-61 21-60 (78)
283 PHA01748 hypothetical protein 21.3 1.5E+02 0.0032 22.3 3.7 31 351-381 6-37 (60)
284 PF01988 VIT1: VIT family; In 21.2 1.6E+02 0.0034 27.6 4.7 38 171-212 81-118 (213)
285 KOG1071 Mitochondrial translat 21.2 1.5E+02 0.0032 30.1 4.6 39 357-395 45-84 (340)
286 PF09030 Creb_binding: Creb bi 21.0 89 0.0019 26.5 2.6 22 285-306 71-92 (104)
287 PF09713 A_thal_3526: Plant pr 20.8 1.1E+02 0.0024 22.9 2.8 26 293-318 26-51 (54)
288 cd01777 SNX27_RA Ubiquitin dom 20.7 1.9E+02 0.0041 23.8 4.4 41 2-45 3-43 (87)
289 KOG4361 BCL2-associated athano 20.6 38 0.00082 34.6 0.4 60 13-75 73-138 (344)
290 smart00314 RA Ras association 20.4 4.3E+02 0.0093 20.7 9.6 44 10-56 15-65 (90)
291 PF11372 DUF3173: Domain of un 20.2 1.2E+02 0.0026 23.1 2.9 21 176-199 6-26 (59)
292 PF03931 Skp1_POZ: Skp1 family 20.2 76 0.0016 23.7 1.9 32 1-32 1-32 (62)
293 PRK14605 ruvA Holliday junctio 20.2 1.2E+02 0.0026 28.4 3.6 27 359-385 149-175 (194)
294 PF11266 DUF3066: Protein of u 20.2 55 0.0012 30.7 1.3 39 353-394 34-72 (219)
No 1
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.8e-93 Score=716.84 Aligned_cols=363 Identities=44% Similarity=0.740 Sum_probs=256.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~~ 80 (402)
|+|+||+++|++|.|+|++++||.+||++|+.+.|++.+++++|||||+||+|+|+++|++|||+++++|+||++|+|..
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~k~~ 80 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKPKTG 80 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccCCCC
Confidence 89999999999999999999999999999999988555899999999999999999999999999999999999998875
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCccc
Q 015700 81 SSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPA-PAPAPAPVSSVSDVY 159 (402)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 159 (402)
++..+++...+++++.++. +++ ++.+....++++.++ .++ .+.+. +++ +...+.+++.. ...
T Consensus 81 ~~~~~~~~~~~~~~p~~~~-~~~---~~~~~~~~~~~~~~~-----~~~----~~~~~---~~~~~~~~~~~~~~~-~~~ 143 (378)
T TIGR00601 81 TGKSAPPAATPTSAPTPTP-SPP---ASPASGMSAAPASAV-----EEK----SPSEE---SATATAPESPSTSVP-SSG 143 (378)
T ss_pred CCCCCCCCCCCCCCCCCCC-CCC---CCCCCCCCCCCCCCC-----ccc----cccCC---CCCCCCCCCCCcccc-ccC
Confidence 3322211101101011100 000 000000000000000 000 00000 000 00000000000 001
Q ss_pred chhcccccCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCCCCCCCCCccccccCCCCCCCCCCcc
Q 015700 160 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239 (402)
Q Consensus 160 ~~a~s~l~~g~~~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~GIP~~~~~~~~~~~~~~~~~~~~~~~~ 239 (402)
..+.|+||+|++||++|++||+|| |+|+||+|||||||||||||||||++|||++++...+ ... +...
T Consensus 144 ~~~~s~l~~g~~~e~~I~~i~eMG---f~R~qV~~ALRAafNNPdRAVEYL~tGIP~~~~~~~~----~~~----~~~~- 211 (378)
T TIGR00601 144 SDAASTLVVGSERETTIEEIMEMG---YEREEVERALRAAFNNPDRAVEYLLTGIPEDPEQPEP----VQQ----TAAS- 211 (378)
T ss_pred CCcccccccchHHHHHHHHHHHhC---CCHHHHHHHHHHHhCCHHHHHHHHHhCCCcccccccc----CCC----cccc-
Confidence 146789999999999999999999 9999999999999999999999999999998652111 100 0000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcCCCCCCCC------CCCCCCchHHhhCcHHHHHHHHHHHhCccchHHHHHHHHhhCHH
Q 015700 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMG------SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPH 313 (402)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~lf~~a~~~~~------~~~~~~~l~~Lr~~pqf~~lRq~vq~nP~lL~~~lqqi~~~nP~ 313 (402)
. + ....+.+..+ |||++++.++. .+.|+++|+|||++|||++||++||+||++|++|||||+++||+
T Consensus 212 ~-----~-~~~~~~~~~~-~lf~~a~~~~~~~~~~~~~~g~~~l~~Lr~~pqf~~lR~~vq~NP~~L~~lLqql~~~nP~ 284 (378)
T TIGR00601 212 T-----A-AATTETPQHG-SVFEQAAQGGTEQPATEAAQGGNPLEFLRNQPQFQQLRQVVQQNPQLLPPLLQQIGQENPQ 284 (378)
T ss_pred c-----c-cccCCCCCCc-chhhhhhcccccccccccccCCchHHHhhcCHHHHHHHHHHHHCHHHHHHHHHHHHhhCHH
Confidence 0 0 0111122223 89998864321 11245689999999999999999999999999999999999999
Q ss_pred HHHHHHHcHHHHHHHhcCCCCC--CCCccc---ccccc-cCCc--cccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCC
Q 015700 314 LMRLIQEHQTDFLRLINEPVEG--GEGNVL---GQLAS-AMPQ--AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKN 385 (402)
Q Consensus 314 l~q~I~~n~e~Fl~~l~~~~~~--~~g~~~---~~~~~-~~~~--~i~~t~ee~~ai~rL~~lGf~~~~viqay~acdkn 385 (402)
|+|+|++||++||+||+++++. ++++.. ++... ..+. .|+||+||++||+|||+|||+|++|||||||||||
T Consensus 285 l~q~I~~n~e~Fl~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lT~eE~~AIeRL~~LGF~r~~viqaY~ACdKN 364 (378)
T TIGR00601 285 LLQQISQHPEQFLQMLNEPVGELAGESDMEGGVGAIAEAGLPQMNQIQVTPEEKEAIERLCALGFDRGLVIQAYFACDKN 364 (378)
T ss_pred HHHHHHHCHHHHHHHhcCcccccccccccccccccccccCcccccccccCHHHHHHHHHHHHcCCCHHHHHHHHHhcCCc
Confidence 9999999999999999998532 111111 11111 1112 69999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCC
Q 015700 386 EELAANYLLDHMHE 399 (402)
Q Consensus 386 eelAan~L~~~~~d 399 (402)
|||||||||++.+|
T Consensus 365 EelAAn~Lf~~~~~ 378 (378)
T TIGR00601 365 EELAANYLLSQNFD 378 (378)
T ss_pred HHHHHHHHHhhcCC
Confidence 99999999999876
No 2
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=100.00 E-value=7.7e-94 Score=691.86 Aligned_cols=339 Identities=58% Similarity=0.887 Sum_probs=269.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~~ 80 (402)
|+|+||+++|++|+|+|.+++||.++|++|+...|.+ +|+++|||||+||+|+|+++|.+|+|+++++|+||++|+|..
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~d-yP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k~~ 79 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPD-YPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKDKSA 79 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCC-CchhhheeeecceeccCCcchhhhccccCceEEEEEecCccc
Confidence 8999999999999999999999999999999999988 999999999999999999999999999999999999999831
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 015700 81 SSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG 160 (402)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
.+.. + +.. ++. ...+..+.+|+. +.+.. . .++.. ..++..+.++
T Consensus 80 ~t~~-----a----p~s--~~~---------~~~p~~~~ap~~-s~a~~-------~----s~~~~----~~~~~~~~~~ 123 (340)
T KOG0011|consen 80 STQV-----A----PQS--SAA---------THLPKAAEAPPS-SAAED-------A----SPATP----AQTSQEDTYE 123 (340)
T ss_pred ccCC-----C----CCC--ccc---------cCCCccCCCCCc-ccccc-------C----CCCcc----ccccccchhh
Confidence 1110 0 000 000 000011111100 00000 0 00000 0012234467
Q ss_pred hhcccccCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCCCCCCCCCccccccCCCCCCCCCCccc
Q 015700 161 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240 (402)
Q Consensus 161 ~a~s~l~~g~~~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~GIP~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (402)
.+.++|++|+++|++|.+||+|| |+||+|+|||||||||||||||||++|||+....+.+...+....
T Consensus 124 ~aas~Lv~G~~~e~~V~~Im~MG---y~re~V~~AlRAafNNPeRAVEYLl~GIP~~~~~~~~~~~~~~~~--------- 191 (340)
T KOG0011|consen 124 IAASTLVVGSEYEQTVQQIMEMG---YDREEVERALRAAFNNPERAVEYLLNGIPEDAEVPEPEKSTAAAA--------- 191 (340)
T ss_pred hhhhhhhccchhHHHHHHHHHhC---ccHHHHHHHHHHhhCChhhhHHHHhcCCcccccCCcccCCcccCC---------
Confidence 78999999999999999999999 999999999999999999999999999999865555321111000
Q ss_pred cCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCchHHhhCcHHHHHHHHHHHhCccchHHHHHHHHhhCHHHHHHHHH
Q 015700 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQE 320 (402)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~lf~~a~~~~~~~~~~~~l~~Lr~~pqf~~lRq~vq~nP~lL~~~lqqi~~~nP~l~q~I~~ 320 (402)
..++ +.+|.++|++.+.... |+++|+|||++|||++||+|||+||+||++|||||+++||+|+|+|++
T Consensus 192 ------~~p~---~~~p~~~~~~~~~~~~---~~~~l~fLr~~~qf~~lR~~iqqNP~ll~~~Lqqlg~~nP~L~q~Iq~ 259 (340)
T KOG0011|consen 192 ------ELPA---NAQPLDLFPQGAVEAS---GGDPLEFLRNQPQFQQLRQMIQQNPELLHPLLQQLGKQNPQLLQLIQE 259 (340)
T ss_pred ------CCCC---CCChhhcCCccchhhh---cCCchhhhhccHHHHHHHHHHhhCHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 0001 2356788887654443 348999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhcCCCCCCCCcccccccccCC-ccccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015700 321 HQTDFLRLINEPVEGGEGNVLGQLASAMP-QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 399 (402)
Q Consensus 321 n~e~Fl~~l~~~~~~~~g~~~~~~~~~~~-~~i~~t~ee~~ai~rL~~lGf~~~~viqay~acdkneelAan~L~~~~~d 399 (402)
||++||+|||++++|+++++.++.+..++ ++|+||+||++||+|||+|||+|.+|||||||||||||+||||||+|+||
T Consensus 260 nqe~Fl~mlnep~~~~~~~~~~~~~~~~~~~~I~vtpee~eAIeRL~alGF~ralViqayfACdKNEelAAN~Ll~~~f~ 339 (340)
T KOG0011|consen 260 NQEAFLQLLNEPVEGGDGGGTGAPAAEGPGHQIQVTPEEKEAIERLEALGFPRALVIQAYFACDKNEELAANYLLSHSFE 339 (340)
T ss_pred HHHHHHHHhhcccccccccccccccccCCcceEecCHHHHHHHHHHHHhCCcHHHHHHHHHhcCccHHHHHHHHHhhccC
Confidence 99999999999998766666776665555 79999999999999999999999999999999999999999999999854
Q ss_pred C
Q 015700 400 F 400 (402)
Q Consensus 400 ~ 400 (402)
|
T Consensus 340 d 340 (340)
T KOG0011|consen 340 D 340 (340)
T ss_pred C
Confidence 3
No 3
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=99.81 E-value=2.5e-20 Score=140.84 Aligned_cols=58 Identities=60% Similarity=1.070 Sum_probs=54.3
Q ss_pred hHHhhCcHHHHHHHHHHHhCccchHHHHHHHHhhCHHHHHHHHHcHHHHHHHhcCCCC
Q 015700 277 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 334 (402)
Q Consensus 277 l~~Lr~~pqf~~lRq~vq~nP~lL~~~lqqi~~~nP~l~q~I~~n~e~Fl~~l~~~~~ 334 (402)
|++||++|+|++||++|++||++|+++||+|+++||+|+++|++||++|++||+++.+
T Consensus 1 L~~Lr~~Pqf~~lR~~vq~NP~lL~~lLqql~~~nP~l~q~I~~n~e~Fl~ll~~~~~ 58 (59)
T PF09280_consen 1 LEFLRNNPQFQQLRQLVQQNPQLLPPLLQQLGQSNPQLLQLIQQNPEEFLRLLNEPAE 58 (59)
T ss_dssp CGGGTTSHHHHHHHHHHHC-GGGHHHHHHHHHCCSHHHHHHHHHTHHHHHHHHHSTS-
T ss_pred ChHHHcChHHHHHHHHHHHCHHHHHHHHHHHhccCHHHHHHHHHCHHHHHHHHcCCCC
Confidence 5799999999999999999999999999999999999999999999999999998753
No 4
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.76 E-value=2.4e-18 Score=135.76 Aligned_cols=73 Identities=27% Similarity=0.403 Sum_probs=71.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEec
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k 76 (402)
|+|+||+++|+++.++|++++||.+||++|+++.| +++++|||+|+||.|+|+.+|++|||+++++|+|+++.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~g---i~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLN---VPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999863
No 5
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.75 E-value=7.9e-18 Score=133.21 Aligned_cols=75 Identities=55% Similarity=0.790 Sum_probs=72.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCC--CCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVY--PASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~i--p~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k 78 (402)
|+|+||+++|+++.++|++++||.+||++|++..| + ++++|||+|+|++|+|+.+|++|||++|++|++++++++
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~---i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~~ 77 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKG---CDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKPK 77 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhC---CCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecCC
Confidence 89999999999999999999999999999999999 7 999999999999999999999999999999999998864
No 6
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.73 E-value=1.1e-17 Score=133.70 Aligned_cols=73 Identities=22% Similarity=0.357 Sum_probs=69.9
Q ss_pred CEEEEEeCCCcE-EEEE-eCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEec
Q 015700 1 MKVFVKTLKGTH-FEIE-VKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (402)
Q Consensus 1 MkI~VKtl~g~~-~~ie-V~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k 76 (402)
|+|+||+++|++ +.++ +++++||.+||++|++..| +|+++|||+|+||+|+|+.+|++|||+++++|+|+++.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~g---i~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~ 75 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFN---VEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQ 75 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhC---CCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEec
Confidence 899999999997 7895 8999999999999999999 99999999999999999999999999999999999975
No 7
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.72 E-value=1.6e-17 Score=131.25 Aligned_cols=71 Identities=18% Similarity=0.328 Sum_probs=68.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
|+|+||++.|+.+.++|++++||.+||++|+++.| +++++|||||+||+|+|+++|++|||++|++||+..
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~---~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTG---TRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhC---CChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999863
No 8
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.71 E-value=3.5e-17 Score=129.17 Aligned_cols=73 Identities=27% Similarity=0.369 Sum_probs=69.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k 78 (402)
|+|+||+. ++++++|++++||.+||.+|+++.| +|+++|||+|+||+|+|+++|++|+|+++++||++++.++
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~g---ip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~G 73 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEG---IDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLG 73 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhC---CCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 89999984 7899999999999999999999999 9999999999999999999999999999999999998654
No 9
>PTZ00044 ubiquitin; Provisional
Probab=99.71 E-value=4.1e-17 Score=128.88 Aligned_cols=75 Identities=28% Similarity=0.435 Sum_probs=72.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k 78 (402)
|+|+||+++|+++.++|++++||.+||++|++..| +|++.|||+|+|+.|+|+.+|++|+|+++++|||+++.+.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~g---i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~g 75 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEG---IDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998653
No 10
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.70 E-value=6.4e-17 Score=129.23 Aligned_cols=73 Identities=23% Similarity=0.407 Sum_probs=70.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~ 77 (402)
|+|+||+++|+.+.++|+++.||.+||++|+++.+ +++++|||+|+||+|+|+ +|++|||++|++|+||....
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~---~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~ 74 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLK---VPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVE 74 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhC---CChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecc
Confidence 89999999999999999999999999999999998 999999999999999999 99999999999999998753
No 11
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.70 E-value=6.7e-17 Score=135.87 Aligned_cols=75 Identities=33% Similarity=0.546 Sum_probs=72.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k 78 (402)
|+|+||+++|+++.++|++++||.+||++|+++.| +|+++|||+|+||+|+|+.+|++|+|+++++|+|+++.++
T Consensus 28 M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~l~G 102 (103)
T cd01802 28 MELFIETLTGTCFELRVSPFETVISVKAKIQRLEG---IPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLAMRG 102 (103)
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhC---CChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEecCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998654
No 12
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.69 E-value=1.9e-16 Score=161.48 Aligned_cols=76 Identities=29% Similarity=0.440 Sum_probs=70.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~~ 80 (402)
++|+||+.++ ++.|.|..+.||++||++|...++ +++++++|||.||||+|+.+|..|||++|.+||||++....+
T Consensus 16 irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~---a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~~~~ 91 (493)
T KOG0010|consen 16 IRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFG---APPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQPRP 91 (493)
T ss_pred eEEEEecCCc-ceeEecccchHHHHHHHHHHHhcC---CChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccCCCC
Confidence 5799999998 899999999999999999999998 899999999999999999999999999999999998755433
No 13
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.69 E-value=1.7e-16 Score=124.71 Aligned_cols=74 Identities=36% Similarity=0.557 Sum_probs=71.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~ 77 (402)
|+|+||+++|+++.++|+++.||.+||++|+...| +|++.|||+|+|+.|.|+++|++|+|++|++|+|+++.+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~ 74 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALR 74 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhC---CChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEcc
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999764
No 14
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.68 E-value=8.5e-17 Score=128.94 Aligned_cols=74 Identities=28% Similarity=0.401 Sum_probs=71.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEE--EeCCeecCCCCchhhhccCCCcEEEEEEecC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQML--IHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrL--Iy~GKiL~D~~tL~dygI~~gs~I~v~v~k~ 77 (402)
|+|+||+++|+++.++|+++.||.+||++|++..| +++++||| +|+|++|+|+++|++|||++|++|+|+++|-
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~---i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~~ 78 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIG---VPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQNC 78 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhC---CCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 78999999999999999999999999999999999 99999999 9999999999999999999999999999863
No 15
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.68 E-value=1.5e-16 Score=125.62 Aligned_cols=72 Identities=22% Similarity=0.271 Sum_probs=69.5
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecC
Q 015700 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (402)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~ 77 (402)
|+||++.|+++.++|++++||.+||++|+.+.| +|+++|+|+|+||+|+|+++|++|||+++++|+++++.+
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---i~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~ 72 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRER---VQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLR 72 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhC---CCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 689999999999999999999999999999999 999999999999999999999999999999999998764
No 16
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.68 E-value=2e-16 Score=124.34 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k 78 (402)
|+|+||+.+|+++.++|++++||.+||++|+...| +|++.|+|+|+|+.|+|+++|++|||+++++|+|+++.++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~g 75 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhC---CCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998653
No 17
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.67 E-value=1.5e-16 Score=124.58 Aligned_cols=70 Identities=27% Similarity=0.458 Sum_probs=67.1
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEe
Q 015700 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (402)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~ 75 (402)
+.||.++|+++.++|++++||.+||.+|++..| +|+++|||+|+||+|+|+.+|++|+|+++++|||++.
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~g---i~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~~ 70 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEG---VDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIVN 70 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhC---CCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEeC
Confidence 468999999999999999999999999999999 9999999999999999999999999999999999973
No 18
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.67 E-value=3.2e-16 Score=121.91 Aligned_cols=72 Identities=36% Similarity=0.459 Sum_probs=69.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEe
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~ 75 (402)
|+|+||+++|+++.++|++++||.+||++|+...| ++++.|+|+|+|++|+|+.+|++|||++|++|+|+.+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVG---IPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999864
No 19
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.66 E-value=2.4e-16 Score=122.94 Aligned_cols=70 Identities=30% Similarity=0.546 Sum_probs=67.6
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEe
Q 015700 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (402)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~ 75 (402)
|+||++.|+++.++|++++||.+||++|+++.| +++++|+|+|+||.|+|+.+|++|||+++++|||+.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQG---VPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHC---CCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 689999999999999999999999999999999 9999999999999999999999999999999999864
No 20
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.66 E-value=2.7e-16 Score=125.76 Aligned_cols=73 Identities=21% Similarity=0.197 Sum_probs=64.8
Q ss_pred CEEEEEeCCCcE--EEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhc--cCCCcEEEEEE
Q 015700 1 MKVFVKTLKGTH--FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENK--VAENSFVVVML 74 (402)
Q Consensus 1 MkI~VKtl~g~~--~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dyg--I~~gs~I~v~v 74 (402)
|.|+||+.++++ |.+++++++||++||++|+...+. .+++++|||||+||+|+|+.+|++|+ |+++.+|||+.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~-~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPS-KPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCC-CCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 579999999998 555668999999999999998752 15689999999999999999999996 99999999986
No 21
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.65 E-value=5.4e-16 Score=121.34 Aligned_cols=71 Identities=32% Similarity=0.428 Sum_probs=67.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEe
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~ 75 (402)
|+|+||+.+|+ +.|+|++++||.+||++|++..| ++.++|||+|+||+|.|+++|++|||+++++||++++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~---i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFK---ANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhC---CCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 68999999997 58999999999999999999999 9999999999999999999999999999999999874
No 22
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.64 E-value=6.3e-16 Score=119.63 Aligned_cols=69 Identities=38% Similarity=0.603 Sum_probs=66.1
Q ss_pred EeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecC
Q 015700 6 KTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (402)
Q Consensus 6 Ktl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~ 77 (402)
|+++|+.|.++|++++||.+||++|+...+ +|++.|+|+|+|++|+|+.+|++|||++|++|+|+++++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETG---IPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHT---STGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccc---cccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence 688999999999999999999999999999 999999999999999999999999999999999998753
No 23
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.62 E-value=1.2e-15 Score=120.78 Aligned_cols=70 Identities=29% Similarity=0.414 Sum_probs=67.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe---CCeecCCCCchhhhccCCCcEEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH---QGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy---~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
|+|+|| ++|++|.|+|++++||.+||++|++.+| +|+++|||+| +||+|+|+.+|++|+|++|++|+||.
T Consensus 1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tg---vp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmG 73 (74)
T cd01813 1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTG---VLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMG 73 (74)
T ss_pred CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHC---CCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEe
Confidence 689999 7999999999999999999999999999 9999999996 99999999999999999999999985
No 24
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.59 E-value=2.7e-15 Score=117.70 Aligned_cols=68 Identities=34% Similarity=0.435 Sum_probs=64.5
Q ss_pred EEEEeC-CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC-CchhhhccCCCcEEEEE
Q 015700 3 VFVKTL-KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDV-TTLEENKVAENSFVVVM 73 (402)
Q Consensus 3 I~VKtl-~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~-~tL~dygI~~gs~I~v~ 73 (402)
|+||+. +|+++.++|++++||.+||.+|+++.| +|+++|||+|+||.|+|+ .+|++|||++|++|+|-
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~g---ip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESG---IPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhC---CCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 689999 999999999999999999999999999 999999999999999997 68999999999999873
No 25
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.56 E-value=1e-14 Score=113.39 Aligned_cols=70 Identities=29% Similarity=0.421 Sum_probs=66.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
|+|+||+. |+.+.++|++++||.+||++|+..+| +++++|||+|+|+.|.|+.+|++|||++|++|+||.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~g---i~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTG---VEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhC---CChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 68999986 88999999999999999999999999 999999999999999999999999999999999985
No 26
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=4.7e-15 Score=110.39 Aligned_cols=70 Identities=36% Similarity=0.548 Sum_probs=68.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~ 73 (402)
|.|.||+++|+.+.|+++++++|..+|++|+++.| ||+.+|||||.||.+.|+++-++|++.-|+++|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeG---IPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcC---CCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 88999999999999999999999999999999999 99999999999999999999999999999999974
No 27
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.55 E-value=1.6e-14 Score=114.67 Aligned_cols=68 Identities=26% Similarity=0.396 Sum_probs=65.2
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCC
Q 015700 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (402)
Q Consensus 8 l~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k 78 (402)
++|+++.|+|++++||.+||.+|+...| +|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++.+.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~g---ip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~g 72 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETG---MPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERG 72 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHC---CCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCC
Confidence 5799999999999999999999999999 9999999999999999999999999999999999998755
No 28
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.45 E-value=2.6e-13 Score=102.49 Aligned_cols=64 Identities=42% Similarity=0.649 Sum_probs=61.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCc
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENS 68 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs 68 (402)
|+|+||+.+ +.+.++|+++.||.+||.+|+..+| ++++.|+|+|+|+.|.|+.+|++|||++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~---~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTG---IPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHC---CCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 899999998 7899999999999999999999999 999999999999999999999999999875
No 29
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.44 E-value=6.3e-13 Score=108.31 Aligned_cols=75 Identities=16% Similarity=0.265 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k 78 (402)
|.|+|++.+|+.+.++|.+++||..||++++++.| +++++|||+|+|+.|+|+.|+.+|+|.++++|+|+++.++
T Consensus 12 i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~g---i~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~G 86 (87)
T cd01763 12 INLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQG---LSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTG 86 (87)
T ss_pred EEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhC---CCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEeccc
Confidence 67999999999999999999999999999999999 9999999999999999999999999999999999988654
No 30
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1.6e-14 Score=119.63 Aligned_cols=77 Identities=36% Similarity=0.568 Sum_probs=74.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~~ 80 (402)
|+++++++.|++++++|++++||..||.+|..+.| +|++.|+|||+||+|+|..||++|||..-++||++.+.++..
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~G---i~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG~ 77 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccC---CCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcCC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999999887753
No 31
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.4e-13 Score=121.58 Aligned_cols=79 Identities=34% Similarity=0.540 Sum_probs=75.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~~ 80 (402)
|+|+|+++.++++.++|..++||..+|.+|++..| ||+++|||||.|+.|+|..+|+||+|+.-++|+|+++.++..
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~eg---Ip~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccC---CCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999977655
Q ss_pred CC
Q 015700 81 SS 82 (402)
Q Consensus 81 ~~ 82 (402)
..
T Consensus 78 kk 79 (156)
T KOG0004|consen 78 KK 79 (156)
T ss_pred cc
Confidence 43
No 32
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.40 E-value=3.1e-13 Score=106.92 Aligned_cols=56 Identities=25% Similarity=0.234 Sum_probs=49.8
Q ss_pred CCCcHHHHHHHHHHHhCCCCC-CCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEe
Q 015700 19 PEDKVSDVKKNIETVQGSDVY-PASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (402)
Q Consensus 19 ~~~TV~~LK~kI~~~~g~~~i-p~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~ 75 (402)
.++||.+||++|+++.+.. + ++++|||||+||+|+|+++|++|||++|++|||+.+
T Consensus 19 ~~~TV~~LK~kI~~~~~eg-i~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~~ 75 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDS-LPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILRK 75 (75)
T ss_pred ccCcHHHHHHHHHHhhccC-CCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEeC
Confidence 4689999999999996322 5 589999999999999999999999999999999863
No 33
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.32 E-value=3.2e-12 Score=107.93 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=63.5
Q ss_pred EEEEEeCCCcEE-EEEeCCCCcHHHHHHHHHHHhCC--CCCC--CCCeEEEeCCeecCCCCchhhhc------cCCCcEE
Q 015700 2 KVFVKTLKGTHF-EIEVKPEDKVSDVKKNIETVQGS--DVYP--ASQQMLIHQGKVLKDVTTLEENK------VAENSFV 70 (402)
Q Consensus 2 kI~VKtl~g~~~-~ieV~~~~TV~~LK~kI~~~~g~--~~ip--~~~QrLIy~GKiL~D~~tL~dyg------I~~gs~I 70 (402)
.|.+|..+|..+ .+.+.+++||.+||++|++.+++ ..+| +++|||||+||+|+|++||++|+ +....++
T Consensus 6 e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~Tm 85 (113)
T cd01814 6 EIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITM 85 (113)
T ss_pred EEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEE
Confidence 577887788654 46788999999999999977742 1244 89999999999999999999999 7777899
Q ss_pred EEEEecCC
Q 015700 71 VVMLTKSK 78 (402)
Q Consensus 71 ~v~v~k~k 78 (402)
||+++.+.
T Consensus 86 Hvvlr~~~ 93 (113)
T cd01814 86 HVVVQPPL 93 (113)
T ss_pred EEEecCCC
Confidence 99987543
No 34
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.30 E-value=9.3e-12 Score=95.16 Aligned_cols=68 Identities=43% Similarity=0.663 Sum_probs=64.5
Q ss_pred EEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 4 FVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 4 ~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
+||..+|+.+.+++.++.||.+||++|+..+| ++++.|+|+|+|+.|+|+.+|.+|+|++++.|+|+.
T Consensus 1 ~v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~---~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 1 TVKTLTGKTFELEVSPDDTVAELKAKIAAKEG---VPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred CeEccCCCEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 47888899999999999999999999999999 999999999999999999999999999999999875
No 35
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.28 E-value=1e-11 Score=98.60 Aligned_cols=65 Identities=18% Similarity=0.274 Sum_probs=59.0
Q ss_pred EeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecC-CCCchhhhccC-CCcEEEEEE
Q 015700 6 KTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLK-DVTTLEENKVA-ENSFVVVML 74 (402)
Q Consensus 6 Ktl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~-D~~tL~dygI~-~gs~I~v~v 74 (402)
|...|.++.|+|++++||.+||.+|+.+.| +|++.||| |.|+.|. |+.+|++|||+ +|++|+|.+
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~g---ip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYG---FPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 444688999999999999999999999999 99999999 9999985 67899999999 889999875
No 36
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.19 E-value=8e-11 Score=91.87 Aligned_cols=71 Identities=24% Similarity=0.391 Sum_probs=65.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC-CCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA-SQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~-~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
|+|+|++.+|+.+.+.|.++.+|..|+++++++.+ ++. +.++|+|.|+.|.++.|+++|||++|++|.|++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~---i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKG---IPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHT---TTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhC---CCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 78999999999999999999999999999999999 888 999999999999999999999999999999875
No 37
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.04 E-value=6e-10 Score=91.90 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=57.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCC-CCchhhhccCCCcEEEEEEecC
Q 015700 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD-VTTLEENKVAENSFVVVMLTKS 77 (402)
Q Consensus 12 ~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D-~~tL~dygI~~gs~I~v~v~k~ 77 (402)
...++|++++||++||.+|...++ +++.+|||+|+|+.|.| .++|++|||..++.|+|.+..|
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~---V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~LlideP 79 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFS---VAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADEP 79 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhc---CCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecCC
Confidence 467889999999999999999999 99999999999999976 5799999999999999998643
No 38
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=98.92 E-value=1.9e-09 Score=73.98 Aligned_cols=36 Identities=50% Similarity=0.723 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHH
Q 015700 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYL 210 (402)
Q Consensus 172 ~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL 210 (402)
.++.|+.|++|| |+|++|++||+++.||.|+||+||
T Consensus 2 ~~~~v~~L~~mG---f~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 2 DEEKVQQLMEMG---FSREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHHHHT---S-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHhC
Confidence 578999999999 999999999999999999999998
No 39
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.90 E-value=9.7e-09 Score=87.55 Aligned_cols=74 Identities=20% Similarity=0.291 Sum_probs=55.4
Q ss_pred EEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCC----CCCCCCeEEEeCCeecCCCCchhhhccCCCc------EE
Q 015700 2 KVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSD----VYPASQQMLIHQGKVLKDVTTLEENKVAENS------FV 70 (402)
Q Consensus 2 kI~VKtl~g~-~~~ieV~~~~TV~~LK~kI~~~~g~~----~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs------~I 70 (402)
.|+++..+|+ +..+.+++++||.+||++|...+..+ ...+..+||||.||+|+|+++|++|++..++ ++
T Consensus 4 ~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vm 83 (111)
T PF13881_consen 4 ELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVM 83 (111)
T ss_dssp EEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEE
T ss_pred EEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEE
Confidence 5777778998 77889999999999999999887543 1235578999999999999999999998777 45
Q ss_pred EEEEe
Q 015700 71 VVMLT 75 (402)
Q Consensus 71 ~v~v~ 75 (402)
||+++
T Consensus 84 Hlvvr 88 (111)
T PF13881_consen 84 HLVVR 88 (111)
T ss_dssp EEEE-
T ss_pred EEEec
Confidence 55554
No 40
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2.4e-09 Score=117.37 Aligned_cols=70 Identities=26% Similarity=0.400 Sum_probs=67.6
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEe
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~ 75 (402)
.|+|||++.++.+|.|...+||++||..|..+.+ |+.+.|||||.|++|.|++++++|+| +|.+|||+-|
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~n---i~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlver 73 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVN---IPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVER 73 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcc---cccccceeeecceeeccchhhhhccC-CCeEEEeecc
Confidence 4899999999999999999999999999999999 99999999999999999999999999 9999999977
No 41
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.88 E-value=9.6e-09 Score=83.24 Aligned_cols=71 Identities=25% Similarity=0.316 Sum_probs=59.4
Q ss_pred EEEEEeCC-CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEE-EeCCe-----ec-CCCCchhhhccCCCcEEEEE
Q 015700 2 KVFVKTLK-GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQML-IHQGK-----VL-KDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 2 kI~VKtl~-g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrL-Iy~GK-----iL-~D~~tL~dygI~~gs~I~v~ 73 (402)
+|.|+.-. ....+..+++++||.+||++|+..+| ++++.||| +|.|+ .| +|+++|.+||+++|..|||+
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G---~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVG---TPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHC---CCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 56676543 33455669999999999999999999 99999999 58888 46 67789999999999999998
Q ss_pred Ee
Q 015700 74 LT 75 (402)
Q Consensus 74 v~ 75 (402)
-.
T Consensus 80 D~ 81 (84)
T cd01789 80 DV 81 (84)
T ss_pred eC
Confidence 54
No 42
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.85 E-value=2.2e-08 Score=75.99 Aligned_cols=72 Identities=39% Similarity=0.585 Sum_probs=68.1
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecC
Q 015700 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (402)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~ 77 (402)
+++++..|+.+.+.+....+|..+|.+|....| ++...|+|+|.|+.|.|+.+|.+|+|..++++++..+.+
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~---~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEG---IPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcC---CCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 678889999999999999999999999999999 999999999999999999999999999999999988764
No 43
>PLN02560 enoyl-CoA reductase
Probab=98.80 E-value=1.3e-08 Score=101.21 Aligned_cols=71 Identities=32% Similarity=0.427 Sum_probs=62.2
Q ss_pred CEEEEEeCCCcEE---EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC---C----eecCCCCchhhhccCCCcEE
Q 015700 1 MKVFVKTLKGTHF---EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ---G----KVLKDVTTLEENKVAENSFV 70 (402)
Q Consensus 1 MkI~VKtl~g~~~---~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~---G----KiL~D~~tL~dygI~~gs~I 70 (402)
|+|+|+..+|+.+ +|+|+++.||++||++|+++.+. +++++|||++. | +.|+|+++|++|||+++++|
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~--~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstL 78 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKK--YYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTV 78 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCC--CChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceE
Confidence 8999998888887 79999999999999999999872 47899999983 3 48899999999999999987
Q ss_pred EEE
Q 015700 71 VVM 73 (402)
Q Consensus 71 ~v~ 73 (402)
++-
T Consensus 79 y~k 81 (308)
T PLN02560 79 VFK 81 (308)
T ss_pred EEE
Confidence 653
No 44
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.71 E-value=4.5e-08 Score=82.71 Aligned_cols=73 Identities=22% Similarity=0.287 Sum_probs=62.1
Q ss_pred CEEEEEeCCC-cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhcc-------CCCcEEEE
Q 015700 1 MKVFVKTLKG-THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV-------AENSFVVV 72 (402)
Q Consensus 1 MkI~VKtl~g-~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI-------~~gs~I~v 72 (402)
|.++++.+.. .++.+++.++.||.+||++|+.... .|++.|||+..+.+|+|++||++||+ ....+|-|
T Consensus 1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k---~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgL 77 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILK---RPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGL 77 (119)
T ss_pred CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhc---CChhHheeecCceeecccccHHHcCccccccccCCCCeEEE
Confidence 5566655444 4577899999999999999999998 89999999988899999999999999 66778888
Q ss_pred EEec
Q 015700 73 MLTK 76 (402)
Q Consensus 73 ~v~k 76 (402)
.+++
T Consensus 78 a~r~ 81 (119)
T cd01788 78 AFRS 81 (119)
T ss_pred EEec
Confidence 8775
No 45
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.70 E-value=4.4e-08 Score=77.87 Aligned_cols=70 Identities=23% Similarity=0.263 Sum_probs=55.6
Q ss_pred CEEEEEeCC-CcEEEEEeC-CCCcHHHHHHHHHHHhCCCCCCCCCeEE--EeCCeecCCCCchhhhccCCCcEEEE
Q 015700 1 MKVFVKTLK-GTHFEIEVK-PEDKVSDVKKNIETVQGSDVYPASQQML--IHQGKVLKDVTTLEENKVAENSFVVV 72 (402)
Q Consensus 1 MkI~VKtl~-g~~~~ieV~-~~~TV~~LK~kI~~~~g~~~ip~~~QrL--Iy~GKiL~D~~tL~dygI~~gs~I~v 72 (402)
+.|.++..+ .....++++ ++.||.+||+.|+...+. +++++||| ++.|++|.|+.+|.+|||++|++|+|
T Consensus 1 ~~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~--~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 1 LEILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQ--LTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CeeeccccCcCceeecccCCCCccHHHHHHHHHHHcCC--CCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 356666555 333334444 789999999999998752 67899988 48999999999999999999998876
No 46
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=98.68 E-value=3.4e-08 Score=67.78 Aligned_cols=37 Identities=38% Similarity=0.532 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhc
Q 015700 359 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 395 (402)
Q Consensus 359 ~~ai~rL~~lGf~~~~viqay~acdkneelAan~L~~ 395 (402)
.+.|++|++|||+++.|++|+.+|++|.+.|++|||+
T Consensus 2 ~~~v~~L~~mGf~~~~~~~AL~~~~~d~~~A~~~L~~ 38 (38)
T cd00194 2 EEKLEQLLEMGFSREEARKALRATNNNVERAVEWLLE 38 (38)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence 3579999999999999999999999999999999985
No 47
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.68 E-value=8e-08 Score=78.06 Aligned_cols=72 Identities=24% Similarity=0.320 Sum_probs=57.9
Q ss_pred EEEEEeCCC--cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC----C---eec-CCCCchhhhccCCCcEEE
Q 015700 2 KVFVKTLKG--THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ----G---KVL-KDVTTLEENKVAENSFVV 71 (402)
Q Consensus 2 kI~VKtl~g--~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~----G---KiL-~D~~tL~dygI~~gs~I~ 71 (402)
+|+|..... ..++..++.++||.+||.+|+..+| ++++.|+|.|. + ..| +|+++|.+||+++|..||
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~G---i~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~ 79 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTG---IPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIH 79 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHT---S-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhC---CCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEE
Confidence 577776554 4888999999999999999999999 99999999865 2 124 567899999999999999
Q ss_pred EEEec
Q 015700 72 VMLTK 76 (402)
Q Consensus 72 v~v~k 76 (402)
|.=..
T Consensus 80 V~D~~ 84 (87)
T PF14560_consen 80 VVDTN 84 (87)
T ss_dssp EEE-T
T ss_pred EEeCC
Confidence 98654
No 48
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=98.68 E-value=3.6e-08 Score=67.66 Aligned_cols=36 Identities=39% Similarity=0.641 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHH
Q 015700 358 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 393 (402)
Q Consensus 358 e~~ai~rL~~lGf~~~~viqay~acdkneelAan~L 393 (402)
+.+.|++|++|||+++.|++|+.+|++|.+.|++||
T Consensus 2 ~~~~v~~L~~mGf~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 2 DEEKVQQLMEMGFSREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHhC
Confidence 457799999999999999999999999999999998
No 49
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=98.67 E-value=3.8e-08 Score=67.56 Aligned_cols=37 Identities=51% Similarity=0.788 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015700 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (402)
Q Consensus 173 e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~ 212 (402)
++.|++|++|| |+|++|++||+++.+|.++|++||+.
T Consensus 2 ~~~v~~L~~mG---f~~~~~~~AL~~~~~d~~~A~~~L~~ 38 (38)
T cd00194 2 EEKLEQLLEMG---FSREEARKALRATNNNVERAVEWLLE 38 (38)
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence 57899999999 99999999999999999999999973
No 50
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=98.63 E-value=5.1e-08 Score=66.60 Aligned_cols=36 Identities=47% Similarity=0.629 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHh
Q 015700 359 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 394 (402)
Q Consensus 359 ~~ai~rL~~lGf~~~~viqay~acdkneelAan~L~ 394 (402)
.+.|++|++|||+++.|++|+..|++|.+.|++|||
T Consensus 2 ~~~v~~L~~mGf~~~~a~~aL~~~~~d~~~A~~~L~ 37 (37)
T smart00165 2 EEKIDQLLEMGFSREEALKALRAANGNVERAAEYLL 37 (37)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHC
Confidence 467999999999999999999999999999999997
No 51
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=98.62 E-value=5.1e-08 Score=66.57 Aligned_cols=36 Identities=53% Similarity=0.850 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHH
Q 015700 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 211 (402)
Q Consensus 173 e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~ 211 (402)
++.|++|++|| |++++|.+||+...||.++|++||+
T Consensus 2 ~~~v~~L~~mG---f~~~~a~~aL~~~~~d~~~A~~~L~ 37 (37)
T smart00165 2 EEKIDQLLEMG---FSREEALKALRAANGNVERAAEYLL 37 (37)
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHC
Confidence 67899999999 9999999999999999999999995
No 52
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.43 E-value=1.1e-06 Score=62.95 Aligned_cols=67 Identities=31% Similarity=0.457 Sum_probs=60.8
Q ss_pred EEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 5 VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
|+..++..+.+.+..+.||.+||++|..+.| ++++.++|+++|+.+.+...+.+|++.+++.|+++.
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLG---LPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHHC---cChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 4444788889999999999999999999999 889999999999999999988999999999999874
No 53
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.41 E-value=4.9e-07 Score=72.73 Aligned_cols=69 Identities=28% Similarity=0.359 Sum_probs=43.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC---Ceec--CCCCchhhhccCCCcEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ---GKVL--KDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~---GKiL--~D~~tL~dygI~~gs~I~v~ 73 (402)
|-|.||+.+| .+.|+|++++||.+||++|.+..+ ++...|.|..+ .+.| .++++|+++||+.||.|+|-
T Consensus 5 milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~---~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 5 MILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLS---IPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp -EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS------TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred EEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcC---CCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 6788998777 678999999999999999999999 88888888532 2334 46789999999999999863
No 54
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.31 E-value=3.7e-06 Score=65.95 Aligned_cols=72 Identities=18% Similarity=0.293 Sum_probs=63.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC---C--eecCCCCchhhhccCCCcEEEEEEe
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ---G--KVLKDVTTLEENKVAENSFVVVMLT 75 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~---G--KiL~D~~tL~dygI~~gs~I~v~v~ 75 (402)
++|+||-+++..+++.|+|..+|..||++|....+ + ...|||.|. | ..|.+..+|.+|||-.+-.|.|+-+
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~---~-~g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT 76 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRN---C-SGLQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET 76 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhC---c-ccceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence 58999999999999999999999999999999999 5 469999983 3 4578999999999999888888765
Q ss_pred c
Q 015700 76 K 76 (402)
Q Consensus 76 k 76 (402)
-
T Consensus 77 ~ 77 (80)
T cd01811 77 F 77 (80)
T ss_pred C
Confidence 3
No 55
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=5.5e-06 Score=85.14 Aligned_cols=72 Identities=22% Similarity=0.367 Sum_probs=66.3
Q ss_pred EEEEEeCCCcEEEEE-eCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecC
Q 015700 2 KVFVKTLKGTHFEIE-VKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (402)
Q Consensus 2 kI~VKtl~g~~~~ie-V~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~ 77 (402)
.|.|| |.|+.+.++ ++.++|+..||.+|...+| ++|++||++++|+.|.|+-.+..++||+|.+|++|.+.-
T Consensus 5 ~v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTg---V~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e 77 (473)
T KOG1872|consen 5 TVIVK-WGGKKYPVETLSTDETPSVLKAQLFALTG---VPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAE 77 (473)
T ss_pred eEeee-ecCccccceeccCCCchHHHHHHHHHhcC---CCccceeEEEecccccccccccccccCCCCEEEeecccc
Confidence 36677 899999988 9999999999999999999 999999999999999999999999999999999997643
No 56
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=2.3e-06 Score=65.27 Aligned_cols=69 Identities=19% Similarity=0.308 Sum_probs=61.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEE
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~ 73 (402)
.+.+...-|++..|.+.+++||+++|+.|+..+| ..++...|--.+.+++|.-+|++|.|++|-.+.+.
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtG---T~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTG---TRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhC---CChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 5667777899999999999999999999999999 77888888777788999999999999999887764
No 57
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=8.2e-06 Score=80.01 Aligned_cols=73 Identities=27% Similarity=0.398 Sum_probs=63.7
Q ss_pred CEEEEEeC---CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEec
Q 015700 1 MKVFVKTL---KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (402)
Q Consensus 1 MkI~VKtl---~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k 76 (402)
|.|.|+.. ....+.|+|+.+..|.+||+.++.+.| +|+++.|+||.||.|.|+.++..+.+...+.+|+|+-+
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~g---vp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lR 76 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQG---VPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLR 76 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhC---CChhheEEEEeccccccCceeecccccccchhhhhccC
Confidence 66777754 234588999999999999999999999 99999999999999999999999988888889888543
No 58
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.52 E-value=0.001 Score=68.46 Aligned_cols=59 Identities=20% Similarity=0.148 Sum_probs=50.3
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEe
Q 015700 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (402)
Q Consensus 14 ~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~ 75 (402)
.++.....|-.+|..+|.++.| |+....|.|.+||+|.-.+||.+-|++.+-.+.|++.
T Consensus 53 l~k~sL~i~Gselqa~iakklg---i~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~~ 111 (568)
T KOG2561|consen 53 LKKCSLHITGSELQALIAKKLG---IKENHVKCIINGKILSCRKTLAEQGLKINQELMVAVG 111 (568)
T ss_pred hhhcccccccHHHHHHHHHHcC---CchhhhheeeccceeecccchhhhhhhhhhHHHHHhc
Confidence 4556667788899999999999 8888899999999999999999999988776665554
No 59
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=97.46 E-value=0.0003 Score=58.65 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=46.7
Q ss_pred EEEEEeCCC-cEEEEEeC--CCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhh
Q 015700 2 KVFVKTLKG-THFEIEVK--PEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62 (402)
Q Consensus 2 kI~VKtl~g-~~~~ieV~--~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dy 62 (402)
.|+||..++ ..+.++|. .+.||..||..|.+..+.+ ..-.++||||+||+|.|...|...
T Consensus 2 ~l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~-~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 2 YLTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPE-PSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred eEEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCC-CccccEEeeecCcccCccchhhhh
Confidence 366776553 34667777 7899999999999998422 556688999999999999887765
No 60
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.43 E-value=0.00051 Score=56.57 Aligned_cols=62 Identities=24% Similarity=0.368 Sum_probs=49.6
Q ss_pred CEEEEEeC-CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe-CC-eecCCCCchhhhccC
Q 015700 1 MKVFVKTL-KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH-QG-KVLKDVTTLEENKVA 65 (402)
Q Consensus 1 MkI~VKtl-~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy-~G-KiL~D~~tL~dygI~ 65 (402)
|.++++.. ...++.++.+++.||.+||.+++.... -|++.|||+. .. .+|+|.++|+++|..
T Consensus 1 ~~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~---~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 1 MDVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILK---RPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred CceeeeeeecceeEEeecCccccHHHHHHHHHHHHh---CCCcchheeecCHHHHhhccchhhhcccc
Confidence 33444433 345678899999999999999999998 7999999976 33 678999999999764
No 61
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00089 Score=55.61 Aligned_cols=72 Identities=14% Similarity=0.234 Sum_probs=64.4
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEec
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k 76 (402)
+|.|+.-++..+.+.|.-+...+.|++.-+++.| +.....|++|+|+.+.+..|=.+++..+++.|-++...
T Consensus 22 ~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~G---l~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q 93 (99)
T KOG1769|consen 22 NLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQG---LSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQ 93 (99)
T ss_pred EEEEecCCCCEEEEEeecCChHHHHHHHHHHHcC---CccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeec
Confidence 4566665667778999999999999999999999 88999999999999999999999999999999998654
No 62
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.20 E-value=0.00083 Score=53.57 Aligned_cols=71 Identities=18% Similarity=0.271 Sum_probs=50.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC---CeEEE-eCCeecCCCCchhhhccCCCcEEEE
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS---QQMLI-HQGKVLKDVTTLEENKVAENSFVVV 72 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~---~QrLI-y~GKiL~D~~tL~dygI~~gs~I~v 72 (402)
+|+|...+|+.+.+.+..+.+|.+|...|.+..+....... ..+|. -+|..|+++.+|.++||.+|+.+++
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 57777655688999999999999999999998873212222 35666 6899999999999999999999986
No 63
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.20 E-value=0.00044 Score=70.86 Aligned_cols=41 Identities=32% Similarity=0.480 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015700 357 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 397 (402)
Q Consensus 357 ee~~ai~rL~~lGf~~~~viqay~acdkneelAan~L~~~~ 397 (402)
+-...|++|++|||+|++|..|..|+-.|.+.|+.||+..-
T Consensus 155 ~~e~~I~~i~eMGf~R~qV~~ALRAafNNPdRAVEYL~tGI 195 (378)
T TIGR00601 155 ERETTIEEIMEMGYEREEVERALRAAFNNPDRAVEYLLTGI 195 (378)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhCCHHHHHHHHHhCC
Confidence 33456999999999999999999999999999999999763
No 64
>COG5417 Uncharacterized small protein [Function unknown]
Probab=97.11 E-value=0.0019 Score=50.90 Aligned_cols=71 Identities=10% Similarity=0.224 Sum_probs=57.6
Q ss_pred EEE--EEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC--CCeEEEeCCeecCCCCchhhhccCCCcEEEE
Q 015700 2 KVF--VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA--SQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72 (402)
Q Consensus 2 kI~--VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~--~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v 72 (402)
+|+ ++.++|++|.+.++...+|+.|-..+.+....+-.+. ..+|..-++++|.++..|.+|+|.+|+.+.+
T Consensus 6 kVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 6 KVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 444 4677899999999999999999988887765321222 3568889999999999999999999998875
No 65
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.07 E-value=0.0038 Score=49.77 Aligned_cols=68 Identities=13% Similarity=0.135 Sum_probs=56.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecCC---CCchhhhccCCCcEEEE
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLKD---VTTLEENKVAENSFVVV 72 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLI--y~GKiL~D---~~tL~dygI~~gs~I~v 72 (402)
+|.||..+|+.+...+..++||.+|.+.|....+ ......+|+ |..|.|.+ +++|.++|+..+.+|+|
T Consensus 6 ~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~---~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 6 RLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALT---DGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHccc---CCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 6899999999999999999999999999966555 444567775 77888864 47999999988887765
No 66
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.07 E-value=0.0038 Score=49.71 Aligned_cols=69 Identities=22% Similarity=0.285 Sum_probs=58.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCC-eEEE--eCCeecCCC--CchhhhccCCCcEEEEE
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLI--HQGKVLKDV--TTLEENKVAENSFVVVM 73 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~-QrLI--y~GKiL~D~--~tL~dygI~~gs~I~v~ 73 (402)
+|.||..+|+.+.-.+..++||.+|...|..... .+... .+|+ |..+.|.++ ++|+++|+..+.+|+|-
T Consensus 8 ~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~---~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 8 RIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLF---SPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp EEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHH---CTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred EEEEECCCCCEEEEEECCcchHHHHHHHHHHhcC---CCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 6889999999999999999999999999998876 33443 6776 778888654 69999999999988763
No 67
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=7.6e-05 Score=73.88 Aligned_cols=76 Identities=20% Similarity=0.213 Sum_probs=57.5
Q ss_pred EEEEEeCCC--cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCC--CcEEEEEEecC
Q 015700 2 KVFVKTLKG--THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAE--NSFVVVMLTKS 77 (402)
Q Consensus 2 kI~VKtl~g--~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~--gs~I~v~v~k~ 77 (402)
.+.||..+. +.+.|..+..+||++||..++..+..+ --..+|||||.||.|.|...|+|+-+|. ..++||++..+
T Consensus 11 ~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPsk-pl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvcnsk 89 (391)
T KOG4583|consen 11 TLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSK-PLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVCNSK 89 (391)
T ss_pred EEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCC-CchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhcCCC
Confidence 466776655 446677888899999999999988643 3356899999999999999999986654 34666666544
Q ss_pred C
Q 015700 78 K 78 (402)
Q Consensus 78 k 78 (402)
.
T Consensus 90 ~ 90 (391)
T KOG4583|consen 90 E 90 (391)
T ss_pred C
Confidence 3
No 68
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=96.94 E-value=0.0067 Score=47.93 Aligned_cols=67 Identities=28% Similarity=0.392 Sum_probs=54.1
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecCC---CCchhhhccCCCcEEEEE
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLKD---VTTLEENKVAENSFVVVM 73 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLI--y~GKiL~D---~~tL~dygI~~gs~I~v~ 73 (402)
+|.||..+|+.+...+..++||.+|..-|..... .....+|+ |..|.|.| +.+|+++|+. .+.+++.
T Consensus 4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~----~~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~~ 75 (77)
T cd01767 4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGP----PAEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQR 75 (77)
T ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCC----CCCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEEE
Confidence 6899999999999999999999999999987654 24556776 67888865 6899999999 4555543
No 69
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=96.91 E-value=0.002 Score=61.79 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=54.4
Q ss_pred CEEEEEeCCCc-EEE-EEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE----eCCeecCCCCchhhhccCCCcEEEE
Q 015700 1 MKVFVKTLKGT-HFE-IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI----HQGKVLKDVTTLEENKVAENSFVVV 72 (402)
Q Consensus 1 MkI~VKtl~g~-~~~-ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLI----y~GKiL~D~~tL~dygI~~gs~I~v 72 (402)
|+|+++..++. ..+ .+.+...||.|++++|..+..+ +.+..+|+. -+||.|.|+.+|++|+..++.+|+|
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k--~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLK--ITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhc--cCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 88999887663 334 6778889999999888877654 555555443 4799999999999999999977654
No 70
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.0019 Score=60.39 Aligned_cols=64 Identities=25% Similarity=0.393 Sum_probs=55.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCc--EEEEEEe
Q 015700 9 KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENS--FVVVMLT 75 (402)
Q Consensus 9 ~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs--~I~v~v~ 75 (402)
.++.|.+.+...+||+++|.++....+ +.+-.|+++|+|++|.|...|..|+|..|. +|-++|.
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg---~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqviVl 220 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEG---VDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVIVL 220 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhc---cchhhheeeccCCceeccccceeeeecCCCEEEEEEEec
Confidence 466788889999999999999999999 668899999999999999999999999994 4444443
No 71
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=96.83 E-value=0.0019 Score=45.31 Aligned_cols=41 Identities=32% Similarity=0.327 Sum_probs=35.0
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015700 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (402)
Q Consensus 172 ~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~G 213 (402)
+++.|+.|.+|=-. |+++.++++|++.-+|.|+||++|+.|
T Consensus 1 ~~~~v~~L~~mFP~-~~~~~I~~~L~~~~~~ve~ai~~LL~~ 41 (42)
T PF02845_consen 1 REEMVQQLQEMFPD-LDREVIEAVLQANNGDVEAAIDALLEM 41 (42)
T ss_dssp CHHHHHHHHHHSSS-S-HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCC-CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 36789999999211 999999999999999999999999865
No 72
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.77 E-value=0.0097 Score=47.68 Aligned_cols=67 Identities=22% Similarity=0.341 Sum_probs=54.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecCC-CCchhhhccCCCcEEE
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLKD-VTTLEENKVAENSFVV 71 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLI--y~GKiL~D-~~tL~dygI~~gs~I~ 71 (402)
+|.||..+|+.+...+..++||.+|.+.|....+. .......|+ |-.|.|.| +.||++.|+.+ +.|+
T Consensus 6 ~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~--~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~-s~v~ 75 (79)
T cd01770 6 SIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPE--FAARPFTLMTAFPVKELSDESLTLKEANLLN-AVIV 75 (79)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCC--CCCCCEEEecCCCCcccCCCCCcHHHCCCcC-cEEE
Confidence 68899999999999999999999999999987642 123456776 78898866 78999999986 4443
No 73
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.77 E-value=0.01 Score=47.37 Aligned_cols=67 Identities=19% Similarity=0.358 Sum_probs=55.8
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecCC---CCchhhhccCCCcEEEE
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLKD---VTTLEENKVAENSFVVV 72 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLI--y~GKiL~D---~~tL~dygI~~gs~I~v 72 (402)
+|.||..+|+.+...+..++||.+|.+.|....+ . ....+|+ |..|.+.+ +++|.++|+.+..+|+|
T Consensus 6 ~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~---~-~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 6 RIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTG---N-GGPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCC---C-CCCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 6889999999999999999999999999986654 2 2556776 78899964 47999999998887776
No 74
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.0041 Score=57.22 Aligned_cols=94 Identities=20% Similarity=0.235 Sum_probs=63.0
Q ss_pred HHHHHHHhCccchHHHHHHHHhhCH---HHHHHHHHcHHHHHHHhcCCCCCCCCcccccccccCCccccCCHHHHHHHHH
Q 015700 288 ALRTMVQANPQILQPMLQELGKQNP---HLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIER 364 (402)
Q Consensus 288 ~lRq~vq~nP~lL~~~lqqi~~~nP---~l~q~I~~n~e~Fl~~l~~~~~~~~g~~~~~~~~~~~~~i~~t~ee~~ai~r 364 (402)
-||..+-+ |+.+|..-.-.+| .++++.-+|.+.|..-.-.=-..-.| ......+.+...|++
T Consensus 104 TlrtvLis----lQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~-----------~~~~~~~~~~~~v~~ 168 (200)
T KOG0418|consen 104 TLRTVLIS----LQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAG-----------GRLPDDPWDKKKVDS 168 (200)
T ss_pred hHHHHHHH----HHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhC-----------CCCCCCchhHHHHHH
Confidence 45555544 4444443333444 45666678888887653210000000 013456677888999
Q ss_pred HHHcCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015700 365 LEAMGFDRALVLEVFFACNKNEELAANYLLDH 396 (402)
Q Consensus 365 L~~lGf~~~~viqay~acdkneelAan~L~~~ 396 (402)
|++|||+|.++|.++.--++|-+.|.+.||+.
T Consensus 169 l~~mGf~~~~~i~~L~~~~w~~~~a~~~~~s~ 200 (200)
T KOG0418|consen 169 LIEMGFSELEAILVLSGSDWNLADATEQLLSG 200 (200)
T ss_pred HHHhcccHHHHHHHhhccccchhhhhHhhccC
Confidence 99999999999999999999999999999873
No 75
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.39 E-value=0.028 Score=45.53 Aligned_cols=69 Identities=19% Similarity=0.353 Sum_probs=59.6
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecCC---CCchhhhccCCCcEEEEEE
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLKD---VTTLEENKVAENSFVVVML 74 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLI--y~GKiL~D---~~tL~dygI~~gs~I~v~v 74 (402)
+|.||..+|+.+.-.+..+.++.+|-..|.. .| .+.+..+|+ |--|+|.. +.+|++.|+....+|+|--
T Consensus 7 ~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g---~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 7 RLMLRYPDGKREQIALPEQAKLLALVRHVQS-KG---YPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cC---CCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 6899999999999999999999999999988 56 677889997 77888842 5799999999999988753
No 76
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=96.29 E-value=0.017 Score=44.64 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=46.4
Q ss_pred eCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEE
Q 015700 7 TLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72 (402)
Q Consensus 7 tl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v 72 (402)
..+++.+.|.|.++.++.++-+....++| +..++-.|.|++|.|+-+..+.-.|+-+|..+.+
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~---l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFG---LDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT-----GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcC---CCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 36788999999999999999999999999 8888899999999999999999999999998764
No 77
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0028 Score=68.07 Aligned_cols=43 Identities=40% Similarity=0.652 Sum_probs=39.5
Q ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCCC
Q 015700 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215 (402)
Q Consensus 170 ~~~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~GIP 215 (402)
+..|..|..|++|| |.|.|++.||++..||.+|||||+++-+-
T Consensus 633 ~~~e~~v~si~smG---f~~~qa~~aL~~~n~nveravDWif~h~d 675 (763)
T KOG0944|consen 633 EVDEESVASIVSMG---FSRNQAIKALKATNNNVERAVDWIFSHMD 675 (763)
T ss_pred CCChhHheeeeeec---CcHHHHHHHHHhcCccHHHHHHHHHhccc
Confidence 45688999999999 99999999999999999999999998744
No 78
>smart00727 STI1 Heat shock chaperonin-binding motif.
Probab=96.02 E-value=0.0074 Score=41.95 Aligned_cols=36 Identities=47% Similarity=0.652 Sum_probs=29.6
Q ss_pred HHhhCcHHHHHHHHHHHhCccchHHHHHHHHhhCHHHHHHH
Q 015700 278 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLI 318 (402)
Q Consensus 278 ~~Lr~~pqf~~lRq~vq~nP~lL~~~lqqi~~~nP~l~q~I 318 (402)
..|+ +|+|+++.+-+++||+++..+++. ||++++.|
T Consensus 6 ~~l~-~P~~~~~l~~~~~nP~~~~~~~~~----nP~~~~~i 41 (41)
T smart00727 6 LRLQ-NPQVQSLLQDMQQNPDMLAQMLQE----NPQLLQLI 41 (41)
T ss_pred HHHc-CHHHHHHHHHHHHCHHHHHHHHHh----CHHhHhhC
Confidence 3344 999999999999999998887764 99988764
No 79
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.0087 Score=62.66 Aligned_cols=43 Identities=26% Similarity=0.392 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCC-CHHHHHHHHhccCCCCC
Q 015700 359 REAIERLEAMGFDRALVLEVFFACNK-NEELAANYLLDHMHEFE 401 (402)
Q Consensus 359 ~~ai~rL~~lGf~~~~viqay~acdk-neelAan~L~~~~~d~~ 401 (402)
+-+|++|.+|||+...+.+|+++.+. +-|-|-||||+++.|-|
T Consensus 559 qs~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMdDPd 602 (749)
T COG5207 559 QSLIRQLVDMGFPEEDAARALGITGNQDAESAMNWLFQHMDDPD 602 (749)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhhccCcchHHHHHHHHhhccCcc
Confidence 34699999999999999999999876 89999999999988754
No 80
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=95.86 E-value=0.028 Score=58.79 Aligned_cols=45 Identities=40% Similarity=0.534 Sum_probs=40.2
Q ss_pred cccCCHHHHHH--HHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhc
Q 015700 351 AVTVTPEEREA--IERLEAMGF-DRALVLEVFFACNKNEELAANYLLD 395 (402)
Q Consensus 351 ~i~~t~ee~~a--i~rL~~lGf-~~~~viqay~acdkneelAan~L~~ 395 (402)
.-.+.+|++-+ +++|.+||| +|+..+||++|...|.+.|...||.
T Consensus 445 ~~~~~pe~r~q~QLeQL~~MGF~nre~nlqAL~atgGdi~aAverll~ 492 (493)
T KOG0010|consen 445 QQTVPPEERYQTQLEQLNDMGFLDREANLQALRATGGDINAAVERLLG 492 (493)
T ss_pred cCCCCchHHHHHHHHHHHhcCCccHHHHHHHHHHhcCcHHHHHHHHhc
Confidence 34677888877 899999998 8999999999999999999999974
No 81
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.011 Score=54.47 Aligned_cols=46 Identities=26% Similarity=0.296 Sum_probs=43.6
Q ss_pred cccCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015700 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (402)
Q Consensus 165 ~l~~g~~~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~G 213 (402)
.+..+..+.+.|.+|.+|| |+|+.++.+|+-+-.|-.+|-|+|++|
T Consensus 155 ~~~~~~~~~~~v~~l~~mG---f~~~~~i~~L~~~~w~~~~a~~~~~s~ 200 (200)
T KOG0418|consen 155 RLPDDPWDKKKVDSLIEMG---FSELEAILVLSGSDWNLADATEQLLSG 200 (200)
T ss_pred CCCCCchhHHHHHHHHHhc---ccHHHHHHHhhccccchhhhhHhhccC
Confidence 3778899999999999999 999999999999999999999999886
No 82
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=95.85 E-value=0.064 Score=48.72 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=54.5
Q ss_pred CEEEEEeCCC----cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCe-EEEe-CCeec--CCCCchhhhccCCCc----
Q 015700 1 MKVFVKTLKG----THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQ-MLIH-QGKVL--KDVTTLEENKVAENS---- 68 (402)
Q Consensus 1 MkI~VKtl~g----~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~Q-rLIy-~GKiL--~D~~tL~dygI~~gs---- 68 (402)
|+|+|+++.| .++.+.+..+.||.+|+.+|....+ ++...+ .|.+ .++.| .++..++++.-...+
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~---~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~ 77 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLP---IPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFI 77 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcC---CCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCce
Confidence 7899999999 5889999999999999999999998 666664 3444 34444 456677777544433
Q ss_pred EEEEEEecCC
Q 015700 69 FVVVMLTKSK 78 (402)
Q Consensus 69 ~I~v~v~k~k 78 (402)
+|+|+++..+
T Consensus 78 ~l~l~~rl~G 87 (162)
T PF13019_consen 78 TLRLSLRLRG 87 (162)
T ss_pred EEEEEEeccC
Confidence 4555555444
No 83
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.82 E-value=0.066 Score=43.51 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=55.3
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecC--------CCCchhhhccCCCcEEE
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVLK--------DVTTLEENKVAENSFVV 71 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy--~GKiL~--------D~~tL~dygI~~gs~I~ 71 (402)
+|.||..+|+.+.-.+..++||.+|..-|.. .+ ..++..+|++ --|+|. .+.||++.||.+..+|+
T Consensus 6 ~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~---~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~ 81 (85)
T cd01774 6 KIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LK---ETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF 81 (85)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CC---CCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence 6899999999999999999999999999964 34 4457888885 448885 26799999999877776
Q ss_pred EE
Q 015700 72 VM 73 (402)
Q Consensus 72 v~ 73 (402)
|-
T Consensus 82 V~ 83 (85)
T cd01774 82 VQ 83 (85)
T ss_pred Ee
Confidence 53
No 84
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.68 E-value=0.086 Score=42.35 Aligned_cols=68 Identities=22% Similarity=0.274 Sum_probs=57.9
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC--C-CCchhhhccCCCcEEEEE
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLK--D-VTTLEENKVAENSFVVVM 73 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLI--y~GKiL~--D-~~tL~dygI~~gs~I~v~ 73 (402)
+|.||..+|+.+.-.+..++++.+|-.-|... | ++....+|+ |--|.|. | +.+|.+.|+....+|+|-
T Consensus 6 ~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~---~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 6 KLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-G---YPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-C---CCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 68999999999999999999999999999764 6 667788886 7888885 3 569999999988888763
No 85
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=95.45 E-value=0.039 Score=38.74 Aligned_cols=39 Identities=26% Similarity=0.406 Sum_probs=35.8
Q ss_pred HHHHHHHHHHc--CCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015700 172 LEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (402)
Q Consensus 172 ~e~~v~~i~~M--G~~~f~reqV~~ALrAafnNPdRAvEyL~~G 213 (402)
.++.|..|.+| . ++++.|++.|++.-+|.|+|++.|+.|
T Consensus 2 ~~~~v~~L~~mFP~---l~~~~I~~~L~~~~g~ve~~i~~LL~~ 42 (43)
T smart00546 2 NDEALHDLKDMFPN---LDEEVIKAVLEANNGNVEATINNLLEG 42 (43)
T ss_pred hHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 46789999999 6 899999999999999999999999876
No 86
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=95.39 E-value=0.037 Score=38.72 Aligned_cols=37 Identities=32% Similarity=0.475 Sum_probs=32.9
Q ss_pred HHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015700 360 EAIERLEAM--GFDRALVLEVFFACNKNEELAANYLLDH 396 (402)
Q Consensus 360 ~ai~rL~~l--Gf~~~~viqay~acdkneelAan~L~~~ 396 (402)
+.|+.|++| .++++.+..++.+|++|.|.|.+.||+.
T Consensus 3 ~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~~ 41 (42)
T PF02845_consen 3 EMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLEM 41 (42)
T ss_dssp HHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 468999999 6899999999999999999999999974
No 87
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.023 Score=61.25 Aligned_cols=45 Identities=29% Similarity=0.553 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHh-CCCHHHHHHHHhccCCCCC
Q 015700 357 EEREAIERLEAMGFDRALVLEVFFAC-NKNEELAANYLLDHMHEFE 401 (402)
Q Consensus 357 ee~~ai~rL~~lGf~~~~viqay~ac-dkneelAan~L~~~~~d~~ 401 (402)
-++-.|.+|.+|||+.+.+.+|.+.. +-+-|.|-||||+++.|.|
T Consensus 570 ~d~s~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HMdDpd 615 (763)
T KOG0944|consen 570 ADRSVISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHMDDPD 615 (763)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhccCcc
Confidence 35678999999999999999998888 8889999999999998865
No 88
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.066 Score=43.88 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=59.2
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
|.|..-+|..+.+.|..+.|.+.|.+..+.+.|+ ..+..|++|+|+-++-++|-.+++..+++.|.++.
T Consensus 27 Lkvv~qd~telfFkiKktT~f~klm~af~~rqGK---~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~ 95 (103)
T COG5227 27 LKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGK---NMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVT 95 (103)
T ss_pred eEEecCCCCEEEEEEeccchHHHHHHHHHHHhCc---CcceeEEEEcceecCCCCChhhcCCccchHHHHHH
Confidence 4444456788889999999999999999999994 47899999999999999999999999998876543
No 89
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.053 Score=50.89 Aligned_cols=70 Identities=19% Similarity=0.219 Sum_probs=53.9
Q ss_pred EEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEE-EeCC-----eecCC-CCchhhhccCCCcEEEEE
Q 015700 2 KVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQML-IHQG-----KVLKD-VTTLEENKVAENSFVVVM 73 (402)
Q Consensus 2 kI~VKtl~g~-~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrL-Iy~G-----KiL~D-~~tL~dygI~~gs~I~v~ 73 (402)
+|+|.+.... .+......+.||.+||.|++..+| .+++.++| +|.| -.|.| +..|..|+..+|-.|||+
T Consensus 3 ~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G---~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihvi 79 (234)
T KOG3206|consen 3 RVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTG---TEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVI 79 (234)
T ss_pred EEEEecccccchhhhhcCCcCcHHHHHhhhhhhhC---CCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEE
Confidence 4555533222 245567889999999999999999 88999998 4665 24654 679999999999999988
Q ss_pred E
Q 015700 74 L 74 (402)
Q Consensus 74 v 74 (402)
=
T Consensus 80 D 80 (234)
T KOG3206|consen 80 D 80 (234)
T ss_pred e
Confidence 4
No 90
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=95.06 E-value=0.06 Score=37.95 Aligned_cols=40 Identities=25% Similarity=0.298 Sum_probs=33.1
Q ss_pred HHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015700 360 EAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDHMHE 399 (402)
Q Consensus 360 ~ai~rL~~l-Gf~~~~viqay~acdkneelAan~L~~~~~d 399 (402)
+.|.+++++ |.++..+++-+.+|++|-+.|++..|++..+
T Consensus 2 e~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~~y~~~~~~ 42 (43)
T PF14555_consen 2 EKIAQFMSITGADEDVAIQYLEANNWDLEAAVNAYFDDGEA 42 (43)
T ss_dssp HHHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHHHHHHSS-S
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 568888887 9999999999999999999999999987543
No 91
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=94.54 E-value=0.052 Score=54.22 Aligned_cols=42 Identities=31% Similarity=0.476 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015700 358 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 399 (402)
Q Consensus 358 e~~ai~rL~~lGf~~~~viqay~acdkneelAan~L~~~~~d 399 (402)
-...|.+|++|||+|+.|+.|..|.=+|.|.|+.||+..--+
T Consensus 135 ~e~~V~~Im~MGy~re~V~~AlRAafNNPeRAVEYLl~GIP~ 176 (340)
T KOG0011|consen 135 YEQTVQQIMEMGYDREEVERALRAAFNNPERAVEYLLNGIPE 176 (340)
T ss_pred hHHHHHHHHHhCccHHHHHHHHHHhhCChhhhHHHHhcCCcc
Confidence 345699999999999999999999999999999999975433
No 92
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=93.93 E-value=0.049 Score=40.67 Aligned_cols=38 Identities=26% Similarity=0.536 Sum_probs=25.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhC-----CCHHHHHHHHhc
Q 015700 358 EREAIERLEAMGFDRALVLEVFFACN-----KNEELAANYLLD 395 (402)
Q Consensus 358 e~~ai~rL~~lGf~~~~viqay~acd-----kneelAan~L~~ 395 (402)
+++.|+|++.|||+++.||+|+.--+ .+.+...|..++
T Consensus 9 ~~~lVd~F~~mGF~~dkVvevlrrlgik~~n~~dn~t~~~ilE 51 (55)
T PF09288_consen 9 DKDLVDQFENMGFERDKVVEVLRRLGIKSMNGVDNETENKILE 51 (55)
T ss_dssp SHHHHHHHHHHT--HHHHHHHHHHS--SS--SS--HHHHHHHH
T ss_pred CHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCccchhHHHHHH
Confidence 35679999999999999999997643 345666776654
No 93
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=93.89 E-value=0.093 Score=41.75 Aligned_cols=56 Identities=23% Similarity=0.351 Sum_probs=45.8
Q ss_pred eCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhh-ccCCCcEEEEEE
Q 015700 17 VKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN-KVAENSFVVVML 74 (402)
Q Consensus 17 V~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dy-gI~~gs~I~v~v 74 (402)
|.++++|.+|++.|...... ..-....|.++|+.|+|...|+++ |++++..|.|+.
T Consensus 1 v~~~d~v~dvrq~L~~~~~t--~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve 57 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPET--CYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVE 57 (76)
T ss_pred CChhhHHHHHHHHHHhCccc--cceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEe
Confidence 56789999999999877542 345567889999999999899888 689999888874
No 94
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=93.68 E-value=0.19 Score=35.27 Aligned_cols=37 Identities=35% Similarity=0.442 Sum_probs=32.8
Q ss_pred HHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015700 360 EAIERLEAM--GFDRALVLEVFFACNKNEELAANYLLDH 396 (402)
Q Consensus 360 ~ai~rL~~l--Gf~~~~viqay~acdkneelAan~L~~~ 396 (402)
+.|+.|++| .+++..+...+.+|++|.+.|.|.||+.
T Consensus 4 ~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~~ 42 (43)
T smart00546 4 EALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLEG 42 (43)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 468999999 4578999999999999999999999974
No 95
>PRK06437 hypothetical protein; Provisional
Probab=92.82 E-value=0.69 Score=35.76 Aligned_cols=58 Identities=21% Similarity=0.326 Sum_probs=44.9
Q ss_pred EEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 5 VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
|+--.++...++++...||.+|-+. .+ ++.+...+..+|+++. .++-|++||.|.++-
T Consensus 5 ~~v~g~~~~~~~i~~~~tv~dLL~~----Lg---i~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 5 IRVKGHINKTIEIDHELTVNDIIKD----LG---LDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE 62 (67)
T ss_pred EEecCCcceEEEcCCCCcHHHHHHH----cC---CCCccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence 3433456677888888999998765 46 7778888899999997 556788999998874
No 96
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=92.58 E-value=0.37 Score=36.39 Aligned_cols=56 Identities=21% Similarity=0.319 Sum_probs=40.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEe
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~ 75 (402)
|+|+|. |+ .+++..+.|+.+||.++.. +.=.+||+|-..+++. -+++||.|+++.|
T Consensus 1 M~I~vN---~k--~~~~~~~~tl~~lr~~~k~---------~~DI~I~NGF~~~~d~-----~L~e~D~v~~Ikk 56 (57)
T PF14453_consen 1 MKIKVN---EK--EIETEENTTLFELRKESKP---------DADIVILNGFPTKEDI-----ELKEGDEVFLIKK 56 (57)
T ss_pred CEEEEC---CE--EEEcCCCcCHHHHHHhhCC---------CCCEEEEcCcccCCcc-----ccCCCCEEEEEeC
Confidence 666664 44 4677788899999987633 2226799999988765 4668899988743
No 97
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=92.47 E-value=0.14 Score=38.23 Aligned_cols=23 Identities=35% Similarity=0.679 Sum_probs=19.3
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015700 173 EATVQQILDMGGGSWDRETVIRALRA 198 (402)
Q Consensus 173 e~~v~~i~~MG~~~f~reqV~~ALrA 198 (402)
...|+++++|| |+|+.|+.|||-
T Consensus 10 ~~lVd~F~~mG---F~~dkVvevlrr 32 (55)
T PF09288_consen 10 KDLVDQFENMG---FERDKVVEVLRR 32 (55)
T ss_dssp HHHHHHHHHHT-----HHHHHHHHHH
T ss_pred HHHHHHHHHcC---CcHHHHHHHHHH
Confidence 46899999999 999999999995
No 98
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=92.14 E-value=0.65 Score=36.87 Aligned_cols=66 Identities=11% Similarity=0.166 Sum_probs=45.7
Q ss_pred CEEEEEeCC------C-cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC--CCeEEEeCCeecCCCCchhhhccCCCcEEE
Q 015700 1 MKVFVKTLK------G-THFEIEVKPEDKVSDVKKNIETVQGSDVYPA--SQQMLIHQGKVLKDVTTLEENKVAENSFVV 71 (402)
Q Consensus 1 MkI~VKtl~------g-~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~--~~QrLIy~GKiL~D~~tL~dygI~~gs~I~ 71 (402)
|+|+|+... | ....+++....||.+|++.|...... +.. ....+..+|+...+ ++-|++||.|.
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~--l~~~~~~~~vavN~~~v~~-----~~~l~dgDeVa 74 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPS--LEEVRSCCVLALNEEYTTE-----SAALKDGDELA 74 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChh--HHHHhhCcEEEECCEEcCC-----CcCcCCCCEEE
Confidence 788888653 3 45677888889999999999776521 111 12345678887653 34578899998
Q ss_pred EE
Q 015700 72 VM 73 (402)
Q Consensus 72 v~ 73 (402)
++
T Consensus 75 i~ 76 (82)
T PLN02799 75 II 76 (82)
T ss_pred Ee
Confidence 87
No 99
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=91.94 E-value=0.29 Score=39.78 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=31.1
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015700 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (402)
Q Consensus 176 v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~G 213 (402)
|+.+.+.| |.++.|..||++.-.+|..|..|++++
T Consensus 1 i~~~~~~g---~~~~~v~~aL~~tSgd~~~a~~~vl~~ 35 (87)
T PF11626_consen 1 IKHYEELG---YSREFVTHALYATSGDPELARRFVLNF 35 (87)
T ss_dssp -HHHHHHT---B-HHHHHHHHHHTTTBHHHHHHHHHHC
T ss_pred CchHHHhC---CCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 56678899 999999999999999999999999987
No 100
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=91.85 E-value=0.73 Score=35.96 Aligned_cols=57 Identities=11% Similarity=0.142 Sum_probs=41.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCC-CCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEE
Q 015700 12 HFEIEVKPEDKVSDVKKNIETVQGS-DVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 12 ~~~ieV~~~~TV~~LK~kI~~~~g~-~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~ 73 (402)
...++++...||.+|.+.+...++. .........+..+|+... .++-|++||.|.++
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ 74 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAII 74 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEe
Confidence 4677887789999999999987541 001123556678999887 34568899999987
No 101
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=91.56 E-value=1 Score=35.22 Aligned_cols=58 Identities=22% Similarity=0.210 Sum_probs=46.1
Q ss_pred EEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCC-CCCeEEEe----CC--eecCCCCchhhhccC
Q 015700 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYP-ASQQMLIH----QG--KVLKDVTTLEENKVA 65 (402)
Q Consensus 5 VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip-~~~QrLIy----~G--KiL~D~~tL~dygI~ 65 (402)
|+.++|...+++|+.+.|+.+|-..|..+.+ +. .+-.-|.| +| .-|+.+++|.++..+
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~---l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLG---LKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK 65 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHT---TSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcC---CCCccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence 6788999999999999999999999999999 53 33456666 23 236888999999777
No 102
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=91.49 E-value=0.27 Score=49.73 Aligned_cols=70 Identities=14% Similarity=0.125 Sum_probs=60.2
Q ss_pred CEEEEEeC--CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC--CchhhhccCCCcEEEEE
Q 015700 1 MKVFVKTL--KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDV--TTLEENKVAENSFVVVM 73 (402)
Q Consensus 1 MkI~VKtl--~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~--~tL~dygI~~gs~I~v~ 73 (402)
|.++|.+. ..++|.++|..+-....|+..+....| +..+..-|||++++|.++ ..|..||++.+++|.+-
T Consensus 1 M~~tvs~~l~~~~~~~i~v~~dg~L~nl~aL~~~d~g---~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr 74 (380)
T KOG0012|consen 1 MSLTVSVALNFEKKFPIPVTTDGELNNLAALCWKDTG---IVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALR 74 (380)
T ss_pred CeEEEEEEecceeeeccccccccchhhHHHHHHHHhC---cccchhhcccCCCccccchhhhhhhcccccceeEecc
Confidence 67777655 667888999999999999999999999 889999999999999764 68999999999887543
No 103
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=91.28 E-value=0.28 Score=39.87 Aligned_cols=35 Identities=29% Similarity=0.637 Sum_probs=30.9
Q ss_pred HHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015700 362 IERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 396 (402)
Q Consensus 362 i~rL~~lGf~~~~viqay~acdkneelAan~L~~~ 396 (402)
|+++.++||++..|++|+.+|-.+..+|..|++..
T Consensus 1 i~~~~~~g~~~~~v~~aL~~tSgd~~~a~~~vl~~ 35 (87)
T PF11626_consen 1 IKHYEELGYSREFVTHALYATSGDPELARRFVLNF 35 (87)
T ss_dssp -HHHHHHTB-HHHHHHHHHHTTTBHHHHHHHHHHC
T ss_pred CchHHHhCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 67789999999999999999999999999988865
No 104
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=90.45 E-value=0.83 Score=34.63 Aligned_cols=41 Identities=29% Similarity=0.370 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015700 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (402)
Q Consensus 172 ~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~G 213 (402)
.-.+|++|-|.-++ +..+++-+.|+-++++||.||+-||+-
T Consensus 5 ~rk~VQ~iKEiv~~-hse~eIya~L~ecnMDpnea~qrLL~q 45 (60)
T PF06972_consen 5 SRKTVQSIKEIVGC-HSEEEIYAMLKECNMDPNEAVQRLLSQ 45 (60)
T ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 46799999998655 899999999999999999999999863
No 105
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=90.31 E-value=0.38 Score=34.56 Aligned_cols=37 Identities=22% Similarity=0.463 Sum_probs=29.8
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHH
Q 015700 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 211 (402)
Q Consensus 172 ~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~ 211 (402)
.++.+.-|+.+| |.+.++.+|++....+|+.-+|.++
T Consensus 3 ~~d~~~AL~~LG---y~~~e~~~av~~~~~~~~~~~e~~i 39 (47)
T PF07499_consen 3 LEDALEALISLG---YSKAEAQKAVSKLLEKPGMDVEELI 39 (47)
T ss_dssp HHHHHHHHHHTT---S-HHHHHHHHHHHHHSTTS-HHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHhhcCCCCCHHHHH
Confidence 578999999999 9999999999998766666677665
No 106
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=89.67 E-value=2.2 Score=33.13 Aligned_cols=50 Identities=26% Similarity=0.457 Sum_probs=39.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEE
Q 015700 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 12 ~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~ 73 (402)
...++++...||.+|.+.+ + ++.....+..+|+++.. ++-|++||.|.++
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~---~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii 64 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----G---FNTESAIAKVNGKVALE-----DDPVKDGDYVEVI 64 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----C---CCCccEEEEECCEECCC-----CcCcCCCCEEEEE
Confidence 5677888889999998765 5 66667777899999854 5558889998877
No 107
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=89.39 E-value=1.1 Score=36.04 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=33.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC
Q 015700 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG 50 (402)
Q Consensus 12 ~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~G 50 (402)
++.|.|.++.+..+|+++|.++.+ ++.+..+|.|+-
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLk---l~~e~i~LsYkd 47 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLE---LPAEHITLSYKS 47 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC---CCchhcEEEecc
Confidence 899999999999999999999999 988999999964
No 108
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=88.56 E-value=3.5 Score=33.31 Aligned_cols=64 Identities=27% Similarity=0.469 Sum_probs=44.0
Q ss_pred hHHHHHHHHhhCHHHHHHHHHcHHHHHHHhcCCCCCCCCcccccccccCCccccCCHHHHHHHH-----HHHHcCCChHH
Q 015700 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIE-----RLEAMGFDRAL 374 (402)
Q Consensus 300 L~~~lqqi~~~nP~l~q~I~~n~e~Fl~~l~~~~~~~~g~~~~~~~~~~~~~i~~t~ee~~ai~-----rL~~lGf~~~~ 374 (402)
++.++++|+ ++|.+.+...++|+.|+.- ..||+||+++|. .|..+|-.--+
T Consensus 6 ~nrli~~L~-~dp~~rerF~~DPea~~~~-----------------------~gLt~eE~~aL~~~D~~~L~~lGvhp~L 61 (81)
T cd07922 6 VNRLIQELF-KDPGLIERFQDDPSAVFEE-----------------------YGLTPAERAALREGTFGALTSIGVHPIL 61 (81)
T ss_pred HHHHHHHHh-cCHHHHHHHHHCHHHHHHH-----------------------cCCCHHHHHHHHccCHHHHHHcCCCHHH
Confidence 357888887 6999999999999988642 257999999954 47777765444
Q ss_pred HHHHHHHhCCCHHHH
Q 015700 375 VLEVFFACNKNEELA 389 (402)
Q Consensus 375 viqay~acdkneelA 389 (402)
... ++-=.|.++|
T Consensus 62 ~mh--~~~~~np~~~ 74 (81)
T cd07922 62 QMH--YLMYTNPEMA 74 (81)
T ss_pred HHH--HHHHcCcccc
Confidence 333 3333444443
No 109
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=88.50 E-value=1.8 Score=32.91 Aligned_cols=60 Identities=13% Similarity=0.258 Sum_probs=41.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
|+|+| +|+.+.+ + ..||.+|.+.+ + +..+...+-++|+++. .....+.-+++||.|-++-
T Consensus 1 m~i~~---Ng~~~~~--~-~~tl~~Ll~~l----~---~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 1 MKLFV---NGETLQT--E-ATTLALLLAEL----D---YEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILS 60 (65)
T ss_pred CEEEE---CCeEEEc--C-cCcHHHHHHHc----C---CCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEE
Confidence 55555 4776666 3 35899988764 5 5555666779999887 3334566789999998874
No 110
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=88.00 E-value=2.5 Score=34.75 Aligned_cols=63 Identities=13% Similarity=0.190 Sum_probs=42.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--e--CCe-ecCC-CCchhhhccCCCcEEEEEEec
Q 015700 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--H--QGK-VLKD-VTTLEENKVAENSFVVVMLTK 76 (402)
Q Consensus 10 g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLI--y--~GK-iL~D-~~tL~dygI~~gs~I~v~v~k 76 (402)
...++..++..+||..+++.+.+.+. | ...-||- | ++. .|.+ +.||.+.||.+|-.|++=.+.
T Consensus 13 ~~~~t~~FSk~DTI~~v~~~~rklf~---i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn 81 (88)
T PF14836_consen 13 QSVLTKQFSKTDTIGFVEKEMRKLFN---I-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERN 81 (88)
T ss_dssp CEEEEEEE-TTSBHHHHHHHHHHHCT-----TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--
T ss_pred ccHhHhhccccChHHHHHHHHHHHhC---C-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeec
Confidence 34677889999999999999999998 8 6667873 3 222 3655 579999999999988777654
No 111
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=87.84 E-value=0.16 Score=50.55 Aligned_cols=60 Identities=25% Similarity=0.390 Sum_probs=0.0
Q ss_pred EEEEEeCCCcEEEEEeC---C--CCcHHHHHHHHHH----------HhCCCCCCCCCeE-----EEeCCeecCCCCchhh
Q 015700 2 KVFVKTLKGTHFEIEVK---P--EDKVSDVKKNIET----------VQGSDVYPASQQM-----LIHQGKVLKDVTTLEE 61 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~---~--~~TV~~LK~kI~~----------~~g~~~ip~~~Qr-----LIy~GKiL~D~~tL~d 61 (402)
.|++|.+.+-.+.|.+. + +.+|.+||..++. +.+ +|.+++| |+|+-|.+.|.++|.+
T Consensus 80 tV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~---vp~dKik~~~~~lL~~kkPv~~~ktl~e 156 (309)
T PF12754_consen 80 TVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETR---VPLDKIKNFRCRLLYKKKPVGDSKTLAE 156 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhccccccccccc---CCHHHhhhhhhhheecCccCCCcCcHHH
Confidence 46677776665554333 2 5789999999999 777 8999999 9999999999999888
Q ss_pred hcc
Q 015700 62 NKV 64 (402)
Q Consensus 62 ygI 64 (402)
+.-
T Consensus 157 ~l~ 159 (309)
T PF12754_consen 157 VLA 159 (309)
T ss_dssp ---
T ss_pred HHh
Confidence 743
No 112
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=87.52 E-value=3.1 Score=33.29 Aligned_cols=59 Identities=12% Similarity=0.264 Sum_probs=40.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCC---CCC-----CCCeEEEeCCeecCCCCchhhhccCCCcEEEEE
Q 015700 11 THFEIEVKPEDKVSDVKKNIETVQGSD---VYP-----ASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 11 ~~~~ieV~~~~TV~~LK~kI~~~~g~~---~ip-----~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~ 73 (402)
....+++. ..||.+|.+.|.++++.- .+. .....+..+|+...++.. .-|++||.|.++
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~ 82 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIF 82 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEe
Confidence 35677886 889999999999886410 000 123556678887765432 568899999887
No 113
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=85.84 E-value=7 Score=35.50 Aligned_cols=61 Identities=21% Similarity=0.204 Sum_probs=46.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC-CCeEEEe--C-C---eecCCCCchhhhccC
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA-SQQMLIH--Q-G---KVLKDVTTLEENKVA 65 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~-~~QrLIy--~-G---KiL~D~~tL~dygI~ 65 (402)
.|.|..++|....|.++.+.||.+|...|..+.| +.. ..--|.+ . + .-|+...+|.+...+
T Consensus 5 ~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~---l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~ 72 (207)
T smart00295 5 VLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLG---IRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVK 72 (207)
T ss_pred EEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhC---CCccceeEEEEEcCCCCcCeeCCCccCHHHhcCC
Confidence 5788999999999999999999999999999999 632 1223332 1 2 346667778877665
No 114
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=85.53 E-value=2.7 Score=34.32 Aligned_cols=74 Identities=18% Similarity=0.199 Sum_probs=49.8
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC----Ceec-CCCCchhhh----ccCCCcEEEE
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ----GKVL-KDVTTLEEN----KVAENSFVVV 72 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~----GKiL-~D~~tL~dy----gI~~gs~I~v 72 (402)
.+++|+.+|+.+.+.+.+++.+.+|+..|..+.|.+........|.|- -++| .-+.-|.+| ......+|.+
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEgD~VllT~D~DL~e~v~iar~~g~~~v~L 81 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVDDEGDIVLITSDSDLVAAVLVARSAGLKKLDL 81 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEcCCCCEEEEeccchHHHHHHHHHHcCCCEEEE
Confidence 467889999999999999999999999999999932111246677772 3443 333334443 2234455666
Q ss_pred EEe
Q 015700 73 MLT 75 (402)
Q Consensus 73 ~v~ 75 (402)
++.
T Consensus 82 ~v~ 84 (86)
T cd06409 82 HLH 84 (86)
T ss_pred EEe
Confidence 553
No 115
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=85.30 E-value=5.7 Score=32.01 Aligned_cols=70 Identities=16% Similarity=0.158 Sum_probs=47.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC-CCeEEEeCCe----e-cCCCCchhh----hccCCCcEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA-SQQMLIHQGK----V-LKDVTTLEE----NKVAENSFV 70 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~-~~QrLIy~GK----i-L~D~~tL~d----ygI~~gs~I 70 (402)
|+|++. .+|..+.+.+.++.+..+|+.+|.++++ +.. ....|-|..- + |..+.-|.+ |.....++|
T Consensus 1 ~~vK~~-~~~d~~r~~l~~~~~~~~L~~~i~~r~~---~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~~v 76 (82)
T cd06407 1 VRVKAT-YGEEKIRFRLPPSWGFTELKQEIAKRFK---LDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSHTI 76 (82)
T ss_pred CEEEEE-eCCeEEEEEcCCCCCHHHHHHHHHHHhC---CCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCCeE
Confidence 455555 4677889999999999999999999998 543 4567767432 1 333334444 444456677
Q ss_pred EEEE
Q 015700 71 VVML 74 (402)
Q Consensus 71 ~v~v 74 (402)
.+.+
T Consensus 77 ~l~v 80 (82)
T cd06407 77 RLLV 80 (82)
T ss_pred EEEe
Confidence 7665
No 116
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=84.46 E-value=4.5 Score=31.33 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=52.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE-eCCeecCCCCchhhhccCCCcEEEEEEe
Q 015700 9 KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI-HQGKVLKDVTTLEENKVAENSFVVVMLT 75 (402)
Q Consensus 9 ~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLI-y~GKiL~D~~tL~dygI~~gs~I~v~v~ 75 (402)
+|+...++.+....+.-+..+--+..|...-|++...|- -+|.+|+-++.++|||+.++-++++.++
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEee
Confidence 578888888888887777777766666433566666664 5788999999999999999998888764
No 117
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=84.05 E-value=5.4 Score=31.41 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=40.8
Q ss_pred EEEEEeCCC-CcHHHHHHHHHHHhCCCCCC--CCCeEEEeCCeecCCCCchhhhccCCCcEEEEE
Q 015700 12 HFEIEVKPE-DKVSDVKKNIETVQGSDVYP--ASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 12 ~~~ieV~~~-~TV~~LK~kI~~~~g~~~ip--~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~ 73 (402)
...+++..+ .||.+|++.+.++++. +- .....+..+|+...+ +.-|++|+.|.++
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~--l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~ 74 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPE--LAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFI 74 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCch--hhhhccceEEEECCEEcCC-----CcCcCCCCEEEEe
Confidence 357888876 8999999999988641 11 133466678888775 4578899999988
No 118
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.66 E-value=1.4 Score=46.06 Aligned_cols=41 Identities=22% Similarity=0.385 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCCCC
Q 015700 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216 (402)
Q Consensus 173 e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~GIP~ 216 (402)
...|.+|+.|| |++-..+.||++.-||-|.|.++|+--++.
T Consensus 430 ~~~la~Lv~mG---F~e~~A~~ALe~~gnn~~~a~~~L~~s~~n 470 (568)
T KOG2561|consen 430 GISLAELVSMG---FEEGKARSALEAGGNNEDTAQRLLSASVAN 470 (568)
T ss_pred hhhHHHHHHhc---cccchHHHHHHhcCCcHHHHHHHHHHhCCC
Confidence 35799999999 999999999999999999999999987664
No 119
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=83.66 E-value=1.7 Score=36.28 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=24.0
Q ss_pred EEEeCCeecCCCCchhhh-ccCCCcEEEEEEecCC
Q 015700 45 MLIHQGKVLKDVTTLEEN-KVAENSFVVVMLTKSK 78 (402)
Q Consensus 45 rLIy~GKiL~D~~tL~dy-gI~~gs~I~v~v~k~k 78 (402)
.|-|.||.|.++++|++| |-.+...|+|-+.+++
T Consensus 3 ~LW~aGK~l~~~k~l~dy~GkNEKtKiivKl~~~g 37 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDYIGKNEKTKIIVKLQKRG 37 (98)
T ss_pred eEEeccccccCCCcHHHhcCCCcceeEEEEeccCC
Confidence 477999999999999999 3334445555554443
No 120
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=83.59 E-value=3.7 Score=31.59 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=47.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 12 ~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
...+.+....||.+|.+.+..+++.- .......+..+|+.+.+ .-.++-+++||.|.++-
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~-~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~p 72 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPEL-ALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILP 72 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGG-HTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEE
T ss_pred CeEEecCCCCcHHHHHHHHHhhcccc-ccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEEC
Confidence 56788899999999999998886421 12357788899999988 36667789999999874
No 121
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=83.11 E-value=2.1 Score=43.89 Aligned_cols=65 Identities=23% Similarity=0.354 Sum_probs=52.5
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecCC-CCchhhhccCCCc
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLKD-VTTLEENKVAENS 68 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLI--y~GKiL~D-~~tL~dygI~~gs 68 (402)
.|.||.-+|+.+...++.+.||.+|+..|...... .+...+-|+ |--|.|.| +.||++-||.+.-
T Consensus 307 sIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~--~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsv 374 (380)
T KOG2086|consen 307 SIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPG--DSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSV 374 (380)
T ss_pred eEEEEecCCceeeeeccCcccHHHHHHHHHhcCCC--CcCCceeeeecCCCcccCCcchhHHhccchhhh
Confidence 47889889999999999999999999999988763 334456665 67899977 5799999998743
No 122
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=82.45 E-value=3.9 Score=28.61 Aligned_cols=37 Identities=24% Similarity=0.397 Sum_probs=30.3
Q ss_pred HHHHHHHHHc-CCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015700 173 EATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (402)
Q Consensus 173 e~~v~~i~~M-G~~~f~reqV~~ALrAafnNPdRAvEyL~~ 212 (402)
++.|.+.|+. | -+++.++.-|+.+-+|.++||..-+.
T Consensus 1 ~e~i~~F~~iTg---~~~~~A~~~L~~~~wdle~Av~~y~~ 38 (43)
T PF14555_consen 1 DEKIAQFMSITG---ADEDVAIQYLEANNWDLEAAVNAYFD 38 (43)
T ss_dssp HHHHHHHHHHH----SSHHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHC---cCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4678888886 7 79999999999999999999986653
No 123
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=81.33 E-value=5.7 Score=34.53 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=43.9
Q ss_pred EeCC-CCcHHHHHHHHHHHhCCC-------CCCCCCeEEEeC-----------------Ceec---CCCCchhhhccCCC
Q 015700 16 EVKP-EDKVSDVKKNIETVQGSD-------VYPASQQMLIHQ-----------------GKVL---KDVTTLEENKVAEN 67 (402)
Q Consensus 16 eV~~-~~TV~~LK~kI~~~~g~~-------~ip~~~QrLIy~-----------------GKiL---~D~~tL~dygI~~g 67 (402)
.|+. +.||++|++.|.+..... .+..+..||++. ..+| +++++|.+|||.+.
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 4786 899999999998876321 133455676652 2577 77889999999998
Q ss_pred cEEEEEEe
Q 015700 68 SFVVVMLT 75 (402)
Q Consensus 68 s~I~v~v~ 75 (402)
.-|-+...
T Consensus 101 TEiSfF~~ 108 (122)
T PF10209_consen 101 TEISFFNM 108 (122)
T ss_pred ceeeeeCH
Confidence 88877654
No 124
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=80.97 E-value=5.9 Score=30.19 Aligned_cols=60 Identities=17% Similarity=0.240 Sum_probs=42.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
|+|+|. |+.+.+ ....||.+|-+. .+ ++....-+.++|+++..+.- ..+ +++||.|-++-
T Consensus 1 m~i~vN---G~~~~~--~~~~tl~~ll~~----l~---~~~~~vav~~N~~iv~r~~~-~~~-L~~gD~ieIv~ 60 (65)
T PRK05863 1 MIVVVN---EEQVEV--DEQTTVAALLDS----LG---FPEKGIAVAVDWSVLPRSDW-ATK-LRDGARLEVVT 60 (65)
T ss_pred CEEEEC---CEEEEc--CCCCcHHHHHHH----cC---CCCCcEEEEECCcCcChhHh-hhh-cCCCCEEEEEe
Confidence 555554 665544 567788887654 46 77888899999998864432 245 89999998874
No 125
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=80.67 E-value=4.2 Score=33.19 Aligned_cols=62 Identities=18% Similarity=0.137 Sum_probs=42.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEec
Q 015700 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (402)
Q Consensus 12 ~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k 76 (402)
.+...++-..++..||+.++.+.+ +.-+.-.+......|+.+++|-+-||+-...|.+.+--
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~---~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQi 65 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLG---ISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQI 65 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH----S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhC---CCcCCCeEEeccceecCCccHHHhhccccCEEEEEEEE
Confidence 345566777899999999999999 66777777778877999999999999988888877653
No 126
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=80.52 E-value=7.7 Score=30.30 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=36.7
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG 50 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~G 50 (402)
+|.|+. ++..+.+.+..+.|..+|+.+|..+++ +.....+|-|..
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~---~~~~~~~l~Y~D 47 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFG---LDNQSFTLKYQD 47 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhC---CCCCCeEEEEEC
Confidence 455654 667888999999999999999999998 655678888864
No 127
>smart00727 STI1 Heat shock chaperonin-binding motif.
Probab=80.45 E-value=3.1 Score=28.60 Aligned_cols=32 Identities=31% Similarity=0.620 Sum_probs=21.1
Q ss_pred HHHHHHhCccchHHHHHHHHhhCHHHHHHHHH-cHH
Q 015700 289 LRTMVQANPQILQPMLQELGKQNPHLMRLIQE-HQT 323 (402)
Q Consensus 289 lRq~vq~nP~lL~~~lqqi~~~nP~l~q~I~~-n~e 323 (402)
++++++ ||.+ ..++++|. +||++++.+-+ ||+
T Consensus 4 ~~~~l~-~P~~-~~~l~~~~-~nP~~~~~~~~~nP~ 36 (41)
T smart00727 4 MALRLQ-NPQV-QSLLQDMQ-QNPDMLAQMLQENPQ 36 (41)
T ss_pred HHHHHc-CHHH-HHHHHHHH-HCHHHHHHHHHhCHH
Confidence 455665 8864 44666655 68887777666 875
No 128
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=79.91 E-value=8 Score=30.47 Aligned_cols=52 Identities=21% Similarity=0.105 Sum_probs=41.3
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC--C--eecCCCC
Q 015700 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ--G--KVLKDVT 57 (402)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~--G--KiL~D~~ 57 (402)
+.|...+|+.-.+.|.+..||.++-.++.++.| +.++.-.|.+. + +++..+.
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~---l~~~~~~v~~~~~~~~~~~~~~~ 57 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRG---LNPECCDVFLLGLDEKKPLDLDT 57 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcC---CCHHHEEEEEecCCCcCCcCchh
Confidence 467778999999999999999999999999999 77777666544 4 4454443
No 129
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=79.30 E-value=8.5 Score=29.01 Aligned_cols=61 Identities=13% Similarity=0.251 Sum_probs=42.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
|+|+| +|+.+ ++....||.+|-+. .+ ++.....+.++|+++.-.. -.+.-+++||.|-++-
T Consensus 1 m~i~v---NG~~~--~~~~~~tl~~lL~~----l~---~~~~~vav~vNg~iv~r~~-~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 1 MNIQL---NGEPR--ELPDGESVAALLAR----EG---LAGRRVAVEVNGEIVPRSQ-HASTALREGDVVEIVH 61 (66)
T ss_pred CEEEE---CCeEE--EcCCCCCHHHHHHh----cC---CCCCeEEEEECCeEeCHHH-cCcccCCCCCEEEEEE
Confidence 55554 46654 55667899887764 46 7777788889998886432 3334588999988764
No 130
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.08 E-value=2.4 Score=42.64 Aligned_cols=55 Identities=16% Similarity=0.122 Sum_probs=44.3
Q ss_pred EeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe---CCeec-----CCCCchhhhccCCCcEEEEE
Q 015700 16 EVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH---QGKVL-----KDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 16 eV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy---~GKiL-----~D~~tL~dygI~~gs~I~v~ 73 (402)
-|.-..||.|+|+++..+.| +...++||+| .||.- .-++.|-.|+|.+||.+.|-
T Consensus 353 ~I~~~~TV~D~~~~Ld~~VG---vk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 353 LICMTRTVLDFMKILDPKVG---VKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred EEEeehHHHHHHHHhccccc---cccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 34556799999999999999 8899999987 45532 33578999999999988764
No 131
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=76.55 E-value=5.6 Score=28.97 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=28.5
Q ss_pred HHHHHH--cCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015700 362 IERLEA--MGFDRALVLEVFFACNKNEELAANYLLDH 396 (402)
Q Consensus 362 i~rL~~--lGf~~~~viqay~acdkneelAan~L~~~ 396 (402)
|++-.. -|=+|+.+|.-+...+-|.++|.|-||+.
T Consensus 13 I~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsR 49 (53)
T PF11547_consen 13 INQAQVVLQGKSRNVIIRELQRTNLDVNLAVNNLLSR 49 (53)
T ss_dssp HHHHHHHSTTS-HHHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHhcccHHHHHHHHhcc
Confidence 555444 38999999999999999999999999987
No 132
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=76.45 E-value=11 Score=30.92 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=35.4
Q ss_pred EEEEEeC-CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCe
Q 015700 2 KVFVKTL-KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGK 51 (402)
Q Consensus 2 kI~VKtl-~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GK 51 (402)
+|+||.. .|..+.|.|.++.+..+|..+|.++++ +. ...+|-|...
T Consensus 2 ~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~---~~-~~~~iKykDE 48 (86)
T cd06408 2 KIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFG---FK-RRLKIKMKDD 48 (86)
T ss_pred cEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhC---CC-CceEEEEEcC
Confidence 3555544 677899999999999999999999999 63 4556656543
No 133
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=75.67 E-value=15 Score=27.44 Aligned_cols=60 Identities=10% Similarity=0.135 Sum_probs=38.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
|+|+|. |+. +++....||.+|.+.+ + +. ....+.++|+++..+. -.+.-+++||.|.++-
T Consensus 1 m~i~vN---g~~--~~~~~~~tl~~ll~~l----~---~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~ 60 (65)
T PRK06944 1 MDIQLN---QQT--LSLPDGATVADALAAY----G---AR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQ 60 (65)
T ss_pred CEEEEC---CEE--EECCCCCcHHHHHHhh----C---CC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEe
Confidence 555554 665 4556778999988765 3 32 3456678998875332 2233488999998874
No 134
>smart00455 RBD Raf-like Ras-binding domain.
Probab=74.51 E-value=9 Score=29.87 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=40.9
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC--eecC
Q 015700 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG--KVLK 54 (402)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~G--KiL~ 54 (402)
+.|-..+|+...+.+.+..||.++-.+|.++.| +.++...|...| |.|+
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~---l~~~~~~v~~~g~~k~ld 52 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRG---LNPECCVVRLRGEKKPLD 52 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcC---CCHHHEEEEEcCCCccee
Confidence 456677899999999999999999999999999 888888887744 4453
No 135
>PF08938 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This domain is found in various eukaryotic HBS1-like proteins. ; PDB: 1UFZ_A 3IZQ_1.
Probab=74.21 E-value=1.3 Score=35.43 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015700 188 DRETVIRALRAAYNNPERAVEYLYSG 213 (402)
Q Consensus 188 ~reqV~~ALrAafnNPdRAvEyL~~G 213 (402)
++.+++.||.-.|+|+++||.||++.
T Consensus 45 ~e~~i~eal~~~~fDvekAl~~Ll~~ 70 (79)
T PF08938_consen 45 PEEQIKEALWHYYFDVEKALDYLLSK 70 (79)
T ss_dssp -CCHHHHHHHHTTT-CCHHHHHHHHC
T ss_pred CHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 88999999999999999999999986
No 136
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=73.66 E-value=16 Score=28.43 Aligned_cols=63 Identities=16% Similarity=0.298 Sum_probs=43.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
|.++|. ++|+. +++....||.+|-+. .+ ++.+..-+.++|.++..+. -.++-++++|.|.++.
T Consensus 1 ~~m~i~-~ng~~--~e~~~~~tv~dLL~~----l~---~~~~~vav~vNg~iVpr~~-~~~~~l~~gD~ievv~ 63 (68)
T COG2104 1 MPMTIQ-LNGKE--VEIAEGTTVADLLAQ----LG---LNPEGVAVAVNGEIVPRSQ-WADTILKEGDRIEVVR 63 (68)
T ss_pred CcEEEE-ECCEE--EEcCCCCcHHHHHHH----hC---CCCceEEEEECCEEccchh-hhhccccCCCEEEEEE
Confidence 455665 34665 455666899998765 56 7777788889999987432 3345578888887763
No 137
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=73.04 E-value=4.9 Score=42.82 Aligned_cols=39 Identities=31% Similarity=0.601 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhhC-CHHHHHHHHHcCC
Q 015700 173 EATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGI 214 (402)
Q Consensus 173 e~~v~~i~~MG~~~f~reqV~~ALrAafn-NPdRAvEyL~~GI 214 (402)
...|.+|++|| |+.+.+.|||-+.-| +.+.|+.||.--+
T Consensus 559 qs~I~qL~~mG---fp~~~~~rAL~~tgNqDaEsAMNWLFqHM 598 (749)
T COG5207 559 QSLIRQLVDMG---FPEEDAARALGITGNQDAESAMNWLFQHM 598 (749)
T ss_pred HHHHHHHHHcC---CCHHHHHHHHhhccCcchHHHHHHHHhhc
Confidence 56899999999 999999999998777 7899999998653
No 138
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=73.03 E-value=6.9 Score=31.85 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=28.1
Q ss_pred CCCcHHHHHHHHHH-HhCCCCCCCC----CeEEEeCCee----cCCCCchhhhccCCCcEEEEE
Q 015700 19 PEDKVSDVKKNIET-VQGSDVYPAS----QQMLIHQGKV----LKDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 19 ~~~TV~~LK~kI~~-~~g~~~ip~~----~QrLIy~GKi----L~D~~tL~dygI~~gs~I~v~ 73 (402)
...|+++|-++|-+ +.| +-.- .-++||.... -..+++|+++||++|++|.|.
T Consensus 7 ~~~TL~~lv~~Vlk~~Lg---~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 7 KKMTLGDLVEKVLKKKLG---MNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp TT-BHHHHHHHCCCCCS-----SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred hhCcHHHHHHHHHHhccC---CCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 36799999888754 444 2211 3344554332 122578999999999998764
No 139
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=72.78 E-value=2.3 Score=32.29 Aligned_cols=37 Identities=41% Similarity=0.695 Sum_probs=23.4
Q ss_pred HhhCcHHHH--HHHHHHHhCccchHHHHHHHHhhCH-HHHHHHHH
Q 015700 279 FLRNSQQFQ--ALRTMVQANPQILQPMLQELGKQNP-HLMRLIQE 320 (402)
Q Consensus 279 ~Lr~~pqf~--~lRq~vq~nP~lL~~~lqqi~~~nP-~l~q~I~~ 320 (402)
.+++||+.. -|.++-++||++++ +.++|| +|+++|.+
T Consensus 16 ~vq~NP~lL~~lLqql~~~nP~l~q-----~I~~n~e~Fl~ll~~ 55 (59)
T PF09280_consen 16 LVQQNPQLLPPLLQQLGQSNPQLLQ-----LIQQNPEEFLRLLNE 55 (59)
T ss_dssp HHHC-GGGHHHHHHHHHCCSHHHHH-----HHHHTHHHHHHHHHS
T ss_pred HHHHCHHHHHHHHHHHhccCHHHHH-----HHHHCHHHHHHHHcC
Confidence 355577743 56778888888775 556674 56666654
No 140
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=72.47 E-value=19 Score=27.39 Aligned_cols=61 Identities=7% Similarity=0.172 Sum_probs=41.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
|+|+|. |+.+. +....||.+|.+. .+ +......+-.+++++..+ .-+++-+++||.|.++-
T Consensus 1 m~i~vN---g~~~~--~~~~~tl~~ll~~----l~---~~~~~vaVavN~~iv~r~-~w~~~~L~~gD~Ieii~ 61 (66)
T PRK08053 1 MQILFN---DQPMQ--CAAGQTVHELLEQ----LN---QLQPGAALAINQQIIPRE-QWAQHIVQDGDQILLFQ 61 (66)
T ss_pred CEEEEC---CeEEE--cCCCCCHHHHHHH----cC---CCCCcEEEEECCEEeChH-HcCccccCCCCEEEEEE
Confidence 566654 66554 4667899988865 34 445567778999998522 23344588999998874
No 141
>PLN03196 MOC1-like protein; Provisional
Probab=71.71 E-value=19 Score=38.42 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=19.2
Q ss_pred ccccCCHHH--HHHHHHHHHcCCChHHHHHHHHHh
Q 015700 350 QAVTVTPEE--REAIERLEAMGFDRALVLEVFFAC 382 (402)
Q Consensus 350 ~~i~~t~ee--~~ai~rL~~lGf~~~~viqay~ac 382 (402)
.....+-|+ +..|+.|+++|++++.+......|
T Consensus 258 ~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~ 292 (487)
T PLN03196 258 YILGFDLEETVKPNVECLLEFGVRKEALPSVIAQY 292 (487)
T ss_pred ceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 344555443 345777777777777665544444
No 142
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=71.47 E-value=14 Score=38.28 Aligned_cols=73 Identities=15% Similarity=0.233 Sum_probs=57.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe----CCee--cCCCCchhhhccCCCcEEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH----QGKV--LKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy----~GKi--L~D~~tL~dygI~~gs~I~v~v 74 (402)
|.+++|...| ...++|.++++.+.|-.+|-.....+ +.++...++- .|.+ +..+.++.++|++.|..++|-.
T Consensus 1 Mi~rfRsk~G-~~Rve~qe~d~lg~l~~kll~~~~~n-~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 1 MIFRFRSKEG-QRRVEVQESDVLGMLSPKLLAFFEVN-YSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred CeEEEecCCC-ceeeeccccchhhhhhHHHHhhhccC-CCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 7788997777 46789999999999999988776543 6677777763 3443 3457899999999999999887
Q ss_pred e
Q 015700 75 T 75 (402)
Q Consensus 75 ~ 75 (402)
+
T Consensus 79 s 79 (571)
T COG5100 79 S 79 (571)
T ss_pred c
Confidence 3
No 143
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=71.04 E-value=11 Score=28.58 Aligned_cols=38 Identities=18% Similarity=0.443 Sum_probs=33.0
Q ss_pred HHHHHHHHHc-C-CChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015700 359 REAIERLEAM-G-FDRALVLEVFFACNKNEELAANYLLDH 396 (402)
Q Consensus 359 ~~ai~rL~~l-G-f~~~~viqay~acdkneelAan~L~~~ 396 (402)
+.-|+-|++. | +++..+.-.+.-|+-|.+.|++.||++
T Consensus 6 rk~VQ~iKEiv~~hse~eIya~L~ecnMDpnea~qrLL~q 45 (60)
T PF06972_consen 6 RKTVQSIKEIVGCHSEEEIYAMLKECNMDPNEAVQRLLSQ 45 (60)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 4557788886 4 699999999999999999999999985
No 144
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=70.78 E-value=19 Score=27.57 Aligned_cols=61 Identities=11% Similarity=0.224 Sum_probs=40.8
Q ss_pred CEEEEEeCCCcEEEEEeCCC-CcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~-~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
|+|+| +|+.+. +... .||.+|-+. .+ +.+...-+-++|+++.-+ ...++-|++||.|.++-
T Consensus 1 m~I~v---NG~~~~--~~~~~~tv~~lL~~----l~---~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~ 62 (67)
T PRK07696 1 MNLKI---NGNQIE--VPESVKTVAELLTH----LE---LDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVT 62 (67)
T ss_pred CEEEE---CCEEEE--cCCCcccHHHHHHH----cC---CCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEE
Confidence 55555 476554 4444 578877653 45 666777778999998643 34455689999998774
No 145
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=70.36 E-value=16 Score=27.58 Aligned_cols=57 Identities=9% Similarity=0.242 Sum_probs=40.4
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 8 l~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
++|+.+ +++...||.+|.+++ + ++.+...+.++|+++..+ .-.++-|++||.|.++-
T Consensus 4 iNg~~~--~~~~~~tv~~ll~~l----~---~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~ 60 (65)
T cd00565 4 VNGEPR--EVEEGATLAELLEEL----G---LDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVT 60 (65)
T ss_pred ECCeEE--EcCCCCCHHHHHHHc----C---CCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEE
Confidence 356554 456678999998765 4 566778888999988643 22334588999998874
No 146
>PF07223 DUF1421: Protein of unknown function (DUF1421); InterPro: IPR010820 This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function.
Probab=68.94 E-value=5.2 Score=41.00 Aligned_cols=30 Identities=17% Similarity=0.360 Sum_probs=24.6
Q ss_pred cccCCchHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 015700 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALR 197 (402)
Q Consensus 165 ~l~~g~~~e~~v~~i~~MG~~~f~reqV~~ALr 197 (402)
.++..--++++|+.++.|| |.||+|+.-.|
T Consensus 314 ~~~~~~p~ddvidKv~~MG---f~rDqV~a~v~ 343 (358)
T PF07223_consen 314 QSGNRHPYDDVIDKVASMG---FRRDQVRATVR 343 (358)
T ss_pred cccccCcHHHHHHHHHHcC---CcHHHHHHHHH
Confidence 3556666999999999999 99999976444
No 147
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=68.90 E-value=16 Score=28.98 Aligned_cols=63 Identities=21% Similarity=0.221 Sum_probs=40.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe------CCeecCCCCchhhhccCCCcEEEEEEec
Q 015700 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH------QGKVLKDVTTLEENKVAENSFVVVMLTK 76 (402)
Q Consensus 11 ~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy------~GKiL~D~~tL~dygI~~gs~I~v~v~k 76 (402)
++|-+=..++.||.+|+..|.+++.+ +.|....|.- .|--|+.+-.+++. ...++.|.|+++.
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~k--LYP~~~~~~I~~LQD~~~cDLD~d~~V~DV-f~~~~~vrvi~~n 71 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKK--LYPNEPELEILSLQDSDGCDLDPDFLVKDV-FNSNNVVRVILKN 71 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHH--HCCCCCCceEEEeecCCCCCCCcccEeeee-eccCCEEEEEecC
Confidence 45666688999999999999999864 3344434321 23334444455554 3467888887754
No 148
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=68.63 E-value=32 Score=36.42 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=54.7
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCC---CCCCCeEEE-eCCeecCCCCchhhhccCCCcEEEEEEe
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDV---YPASQQMLI-HQGKVLKDVTTLEENKVAENSFVVVMLT 75 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~---ip~~~QrLI-y~GKiL~D~~tL~dygI~~gs~I~v~v~ 75 (402)
+|+|...+ +...+-+..+..|.+|-..|-+..+.+. .....-.|. -+|..|+.+.+|.+.||.||+.+++.-.
T Consensus 4 RVtV~~~~-~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~ 80 (452)
T TIGR02958 4 RVTVLAGR-RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPA 80 (452)
T ss_pred EEEEeeCC-eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeC
Confidence 57777544 4577788889999999999988887320 112233443 5788999999999999999999998853
No 149
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=68.26 E-value=36 Score=27.84 Aligned_cols=67 Identities=21% Similarity=0.193 Sum_probs=45.8
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE------eCCeecCCCCchhhh----ccCCCcEEE
Q 015700 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI------HQGKVLKDVTTLEEN----KVAENSFVV 71 (402)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLI------y~GKiL~D~~tL~dy----gI~~gs~I~ 71 (402)
|+|...+|....|.|+...|++++-+.+..+.++. +...--|+ +=-+.|+|...|-++ ++..+..|+
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~--~~~~W~LvE~~P~l~lER~~EDHE~vvdvl~~W~~~~~n~l~ 81 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQ--DDSSWTLVEHLPHLQLERLFEDHELVVEVLSTWHSAGNSVLF 81 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCC--CCCCeEEEEecchhhhhhhccchHHHHHHHHhcccCCCcEEE
Confidence 55666789999999999999999999999998852 22233332 225678887665444 554444443
No 150
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=67.87 E-value=9 Score=41.34 Aligned_cols=65 Identities=23% Similarity=0.316 Sum_probs=42.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC------CCeEEEe--C--Ce-ecCCC-------------CchhhhccCC
Q 015700 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPA------SQQMLIH--Q--GK-VLKDV-------------TTLEENKVAE 66 (402)
Q Consensus 11 ~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~------~~QrLIy--~--GK-iL~D~-------------~tL~dygI~~ 66 (402)
..+.|.|-..|||.++|+||-+..=++ .|. +..-|-+ + |+ +|.|. .||..|+|.+
T Consensus 202 ~~i~VkVLdCDTItQVKeKiLDavyk~-~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 202 EEIPVKVLDCDTITQVKEKILDAVYKN-TPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp TCEEEEEETTSBHHHHHHHHHHHHTTT-S-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred ceEEEEEEecCcccHHHHHHHHHHHcC-CCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 457888889999999999998775332 332 2333322 2 33 56553 3699999999
Q ss_pred CcEEEEEEec
Q 015700 67 NSFVVVMLTK 76 (402)
Q Consensus 67 gs~I~v~v~k 76 (402)
|++|.++.+.
T Consensus 281 ga~vaLv~k~ 290 (539)
T PF08337_consen 281 GATVALVPKQ 290 (539)
T ss_dssp TEEEEEEES-
T ss_pred CceEEEeecc
Confidence 9998888654
No 151
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=67.08 E-value=21 Score=27.62 Aligned_cols=45 Identities=22% Similarity=0.131 Sum_probs=33.8
Q ss_pred EEEEEeCCCcEEEEEeC-CCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC
Q 015700 2 KVFVKTLKGTHFEIEVK-PEDKVSDVKKNIETVQGSDVYPASQQMLIHQG 50 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~-~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~G 50 (402)
+|.++. +|..+.+.+. .+.|..+|+.+|..+++ +.....+|-|..
T Consensus 2 ~vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~---~~~~~~~l~y~D 47 (81)
T cd05992 2 RVKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFG---LDAVSFKLKYPD 47 (81)
T ss_pred cEEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhC---CCCCcEEEEeeC
Confidence 455553 4567788888 89999999999999998 544566666654
No 152
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=66.92 E-value=24 Score=28.58 Aligned_cols=57 Identities=5% Similarity=0.161 Sum_probs=40.0
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 8 l~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
++|+.+ +++...||.+|-+. .+ ++....-+-++|.++. .....++-+++||.|.++-
T Consensus 23 VNG~~~--~~~~~~tl~~LL~~----l~---~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 23 INDQSI--QVDISSSLAQIIAQ----LS---LPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQ 79 (84)
T ss_pred ECCeEE--EcCCCCcHHHHHHH----cC---CCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEE
Confidence 346544 44567788887765 35 6666777789999984 3345666799999998874
No 153
>PRK07440 hypothetical protein; Provisional
Probab=66.36 E-value=27 Score=27.09 Aligned_cols=57 Identities=12% Similarity=0.235 Sum_probs=39.9
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 8 l~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
++|+. +++....||.+|-+. .+ +.....-+-++|+++.-+ ...++-+++||.|.++-
T Consensus 9 vNG~~--~~~~~~~tl~~lL~~----l~---~~~~~vav~~N~~iv~r~-~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 9 VNGET--RTCSSGTSLPDLLQQ----LG---FNPRLVAVEYNGEILHRQ-FWEQTQVQPGDRLEIVT 65 (70)
T ss_pred ECCEE--EEcCCCCCHHHHHHH----cC---CCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEE
Confidence 45765 455677899887753 45 667777778999998622 23455688999988774
No 154
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=66.27 E-value=5.5 Score=32.35 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=23.6
Q ss_pred CcHHHHHHHHHHHhCccchHHHHHHHHh
Q 015700 282 NSQQFQALRTMVQANPQILQPMLQELGK 309 (402)
Q Consensus 282 ~~pqf~~lRq~vq~nP~lL~~~lqqi~~ 309 (402)
..|.|..|+.+.+.||+.+..+-+++.+
T Consensus 2 ~lp~FD~L~~LA~~dPe~fe~lr~~~~e 29 (83)
T PF11333_consen 2 ELPDFDELKELAQNDPEAFEQLRQELIE 29 (83)
T ss_pred CCCCHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 3588999999999999999987776664
No 155
>PLN03196 MOC1-like protein; Provisional
Probab=66.10 E-value=57 Score=34.82 Aligned_cols=42 Identities=26% Similarity=0.425 Sum_probs=32.4
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHH--------hhCCHHHHHHHHHc-CCCC
Q 015700 172 LEATVQQILDMGGGSWDRETVIRALRA--------AYNNPERAVEYLYS-GIPE 216 (402)
Q Consensus 172 ~e~~v~~i~~MG~~~f~reqV~~ALrA--------afnNPdRAvEyL~~-GIP~ 216 (402)
+...|.-+.++| +.++++.+.+.. .-+|-..-|+||.. |++.
T Consensus 196 l~p~v~fL~~lG---vs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~~ 246 (487)
T PLN03196 196 MSTSVAYLVSIG---VAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPR 246 (487)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCCH
Confidence 456788899999 999999887752 23566788999987 7664
No 156
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=65.94 E-value=32 Score=29.41 Aligned_cols=59 Identities=12% Similarity=0.113 Sum_probs=41.4
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCCCchhhh--ccC-CCcEEEEEEec
Q 015700 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVLKDVTTLEEN--KVA-ENSFVVVMLTK 76 (402)
Q Consensus 15 ieV~~~~TV~~LK~kI~~~~g~~~ip~~~-QrLIy~GKiL~D~~tL~dy--gI~-~gs~I~v~v~k 76 (402)
+-|..+.||.++...|..... +.+++ .-|..++.....+.+|+++ .-+ ++.+++|..+.
T Consensus 45 flVp~~~tv~~f~~~irk~l~---l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfLyl~Ys~ 107 (112)
T cd01611 45 YLVPSDLTVGQFVYIIRKRIQ---LRPEKALFLFVNNSLPPTSATMSQLYEEHKDEDGFLYMTYSS 107 (112)
T ss_pred EEecCCCCHHHHHHHHHHHhC---CCccceEEEEECCccCCchhHHHHHHHHhCCCCCEEEEEEec
Confidence 348899999999999999988 65555 4444566555667777665 223 36788887653
No 157
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=65.91 E-value=21 Score=27.86 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=34.6
Q ss_pred EEEEEeCCCcEEE-EEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC
Q 015700 2 KVFVKTLKGTHFE-IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG 50 (402)
Q Consensus 2 kI~VKtl~g~~~~-ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~G 50 (402)
+|.++. ++..+. +.+..+.+..+|+.+|..+++ .+....+|.|..
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~---~~~~~~~l~Y~D 48 (84)
T PF00564_consen 3 RVKVRY-GGDIRRIISLPSDVSFDDLRSKIREKFG---LLDEDFQLKYKD 48 (84)
T ss_dssp EEEEEE-TTEEEEEEEECSTSHHHHHHHHHHHHHT---TSTSSEEEEEEE
T ss_pred EEEEEE-CCeeEEEEEcCCCCCHHHHHHHHHHHhC---CCCccEEEEeeC
Confidence 344443 445555 899999999999999999999 666788888853
No 158
>COG5272 UBI4 Ubiquitin [Posttranslational modification, protein turnover, chaperones]
Probab=65.12 E-value=2 Score=32.08 Aligned_cols=47 Identities=11% Similarity=-0.071 Sum_probs=40.0
Q ss_pred ccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015700 352 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 399 (402)
Q Consensus 352 i~~t~ee~~ai~rL~~lGf~~~~viqay~acdkneelAan~L~~~~~d 399 (402)
..++.+..+...+++..|+.+.. .++|..|.++++++..+.+.+.+.
T Consensus 6 ~~~~~~~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 52 (57)
T COG5272 6 KKATGGAAKPESQLAKAKDTRPE-KQYAEQDSQLNEMALMDCERNLEA 52 (57)
T ss_pred cccccccccccchHHHHhhccch-hhhhhhccChhhhhcccccccccc
Confidence 35666677778889999999999 999999999999999998877554
No 159
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=64.47 E-value=5.1 Score=28.63 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=21.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCC
Q 015700 359 REAIERLEAMGFDRALVLEVFFACNKN 385 (402)
Q Consensus 359 ~~ai~rL~~lGf~~~~viqay~acdkn 385 (402)
.++++-|..|||++.++-+|.-...++
T Consensus 4 ~d~~~AL~~LGy~~~e~~~av~~~~~~ 30 (47)
T PF07499_consen 4 EDALEALISLGYSKAEAQKAVSKLLEK 30 (47)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhcC
Confidence 468999999999999999988777533
No 160
>PF07746 LigA: Aromatic-ring-opening dioxygenase LigAB, LigA subunit; InterPro: IPR011986 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A (IPR004183 from INTERPRO) and B (IPR004183 from INTERPRO). LigAB is a protocatechuate 4,5-dioxygenase (1.13.11.8 from EC) that belongs to the extradiol class III enzyme family. The LigA subunit of this enzyme is multi-helical, containing a compact array of 6 short helices [].; PDB: 1BOU_A 1B4U_A.
Probab=63.93 E-value=20 Score=29.42 Aligned_cols=45 Identities=27% Similarity=0.324 Sum_probs=32.2
Q ss_pred hHHHHHHHHhhCHHHHHHHHHcHHHHHHHhcCCCCCCCCcccccccccCCccccCCHHHHHH-----HHHHHHcC
Q 015700 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREA-----IERLEAMG 369 (402)
Q Consensus 300 L~~~lqqi~~~nP~l~q~I~~n~e~Fl~~l~~~~~~~~g~~~~~~~~~~~~~i~~t~ee~~a-----i~rL~~lG 369 (402)
|+.++.+| .+|++++...++|+++++ ...||+||+++ +.+|..+|
T Consensus 1 lNkf~~~L--~~~~~r~~F~~D~~a~~~-----------------------~~~Lt~eer~av~~rD~~~L~~~G 50 (88)
T PF07746_consen 1 LNKFCWSL--NDPENRERFLADPEAYLD-----------------------EYGLTEEERQAVLDRDWLALIALG 50 (88)
T ss_dssp HHHHHHGG--GSHHHHHHHHH-HHHHHH-----------------------CCT--HHHHHHHHCT-HHHHHHTT
T ss_pred ChHHHHHH--cCHHHHHHHHHCHHHHHH-----------------------HcCCCHHHHHHHHcCCHHHHHHCC
Confidence 45677777 789999999999988754 23578999999 55688888
No 161
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=63.01 E-value=43 Score=26.05 Aligned_cols=56 Identities=14% Similarity=0.068 Sum_probs=40.1
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCCCchhh
Q 015700 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVLKDVTTLEE 61 (402)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy--~GKiL~D~~tL~d 61 (402)
+.|...+|+...+.|.+..||.++-.++.++.| +.++...+.. ..|.|.-+.....
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~---L~~~~~~V~~~~~~k~l~~~~d~~~ 60 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRG---LNPECCDVRLVGEKKPLDWDQDSSS 60 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT-----CCCEEEEEEEEEEEE-TTSBGGG
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcC---CCHHHEEEEEcCCCccccCCCceee
Confidence 567778999999999999999999999999999 7777665543 4556665554443
No 162
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=62.49 E-value=20 Score=31.20 Aligned_cols=57 Identities=14% Similarity=0.239 Sum_probs=43.0
Q ss_pred EeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhh---ccCCCcEEEEEEe
Q 015700 16 EVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN---KVAENSFVVVMLT 75 (402)
Q Consensus 16 eV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dy---gI~~gs~I~v~v~ 75 (402)
=|..+.||.++...|..+.+ +.+++.-|..++.++.-+.+++++ .-.++.+|++..+
T Consensus 46 lVP~d~tV~qF~~iIRkrl~---l~~~k~flfVnn~lp~~s~~mg~lYe~~KDeDGFLYi~Ys 105 (121)
T PTZ00380 46 ALPRDATVAELEAAVRQALG---TSAKKVTLAIEGSTPAVTATVGDIADACKRDDGFLYVSVR 105 (121)
T ss_pred EcCCCCcHHHHHHHHHHHcC---CChhHEEEEECCccCCccchHHHHHHHhcCCCCeEEEEEc
Confidence 58899999999999999998 877775555566666667788766 2235668887764
No 163
>PF08938 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This domain is found in various eukaryotic HBS1-like proteins. ; PDB: 1UFZ_A 3IZQ_1.
Probab=62.40 E-value=6.2 Score=31.43 Aligned_cols=45 Identities=20% Similarity=0.384 Sum_probs=34.4
Q ss_pred ccCCHHHHHHHHH----HH-HcC--C-ChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015700 352 VTVTPEEREAIER----LE-AMG--F-DRALVLEVFFACNKNEELAANYLLDH 396 (402)
Q Consensus 352 i~~t~ee~~ai~r----L~-~lG--f-~~~~viqay~acdkneelAan~L~~~ 396 (402)
-.||++|++.+.. ++ .|| . ++..+++|.+-|.-|.+-|.+||++.
T Consensus 18 ~~Ls~ed~~~L~~~l~~vr~~Lg~~~~~e~~i~eal~~~~fDvekAl~~Ll~~ 70 (79)
T PF08938_consen 18 DELSPEDQAQLYSCLPQVREVLGDYVPPEEQIKEALWHYYFDVEKALDYLLSK 70 (79)
T ss_dssp HH-TCHHHHHHCHHCCCHHHHCCCCC--CCHHHHHHHHTTT-CCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 4688888887544 22 466 5 89999999999999999999999985
No 164
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=61.83 E-value=28 Score=26.18 Aligned_cols=57 Identities=11% Similarity=0.260 Sum_probs=39.7
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 8 l~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
++|+.+. +....||.+|.+.+ + ++++...+.++|+++..+ .-.++-|++||.|-++-
T Consensus 3 iNg~~~~--~~~~~tv~~ll~~l----~---~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 3 VNGEPVE--VEDGLTLAALLESL----G---LDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVT 59 (64)
T ss_pred ECCeEEE--cCCCCcHHHHHHHc----C---CCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEE
Confidence 4566544 46677999988764 4 566677778999988532 23345689999998774
No 165
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=61.58 E-value=24 Score=39.16 Aligned_cols=70 Identities=16% Similarity=0.239 Sum_probs=48.6
Q ss_pred EEEEeC-CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCC--chhhhccCCCcEEEEEEecC
Q 015700 3 VFVKTL-KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVT--TLEENKVAENSFVVVMLTKS 77 (402)
Q Consensus 3 I~VKtl-~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~--tL~dygI~~gs~I~v~v~k~ 77 (402)
|+|=.. +...+.+-++++.|+..++.+|...+| ||.+.|-|+|.|......+ +..--| -.+-|+|+....
T Consensus 316 vhiFs~~~~~~~~~~~~~~ntl~~~~~~I~~~Tg---ipe~~qeLL~e~~~~h~~~~~Q~~~dg--~~~~l~l~~~~~ 388 (732)
T KOG4250|consen 316 VHIFSMVQATSHEYYVHADNTLHSLIERISKQTG---IPEGKQELLFEGGLSHLEDSAQCIPDG--LDSPLYLVSDQD 388 (732)
T ss_pred eEEEeeccceEEEEecChhhhHHHHHHHHHHhhC---CCCccceeeeecCccccCcccccCCCC--CCCceEEEecCC
Confidence 444333 456678899999999999999999999 9999999999986643332 211112 234566665443
No 166
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=61.51 E-value=15 Score=38.32 Aligned_cols=73 Identities=16% Similarity=0.162 Sum_probs=59.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEE--EeCCeecCC---CCchhhhccCCCcEEEEEEec
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQML--IHQGKVLKD---VTTLEENKVAENSFVVVMLTK 76 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrL--Iy~GKiL~D---~~tL~dygI~~gs~I~v~v~k 76 (402)
+|.||..+|..|+-.+..+.-+..+|..|....+ +.....-| .|--|+..| +++|.++.+.+...|+|+-++
T Consensus 316 rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~---i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk~ 392 (506)
T KOG2507|consen 316 RLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQT---IGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPKK 392 (506)
T ss_pred EEEEecCCccchhhcCCcchHHHHHHHHHHhccc---ccccceeeccccccccccchhhhhhHHHhccCCcceEEEEecC
Confidence 6889999999999899888888899999997776 66666655 588888854 479999999998888777554
Q ss_pred C
Q 015700 77 S 77 (402)
Q Consensus 77 ~ 77 (402)
+
T Consensus 393 r 393 (506)
T KOG2507|consen 393 R 393 (506)
T ss_pred C
Confidence 3
No 167
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=60.31 E-value=32 Score=27.65 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=31.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC
Q 015700 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ 49 (402)
Q Consensus 12 ~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~ 49 (402)
++.|.+.+.....+|..+|+++.. .+++..+|.|.
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~---l~~~~~~LSY~ 42 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALP---QQAQRGQLSYR 42 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhc---CChhhcEEEec
Confidence 566788999999999999999999 89999999995
No 168
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=60.21 E-value=78 Score=24.91 Aligned_cols=54 Identities=6% Similarity=0.114 Sum_probs=32.4
Q ss_pred EEeCC-CCcHHHHHHHHHHHhCC--CCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEE
Q 015700 15 IEVKP-EDKVSDVKKNIETVQGS--DVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 15 ieV~~-~~TV~~LK~kI~~~~g~--~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~ 73 (402)
++++. ..||.+|++.|.+++.. ........++..+++...+ +.-|++||.|.++
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeVai~ 75 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFF 75 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEEEEe
Confidence 34433 47999999999888631 0011223344446654332 3358899999887
No 169
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=59.96 E-value=37 Score=28.65 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=43.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCCCchhhh---ccCCCcEEEEEEe
Q 015700 9 KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVLKDVTTLEEN---KVAENSFVVVMLT 75 (402)
Q Consensus 9 ~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~-QrLIy~GKiL~D~~tL~dy---gI~~gs~I~v~v~ 75 (402)
+.++|- |..+.||.+|...|..+.. +.+++ .-|+.++..+..+.+|+++ .-.++.++++...
T Consensus 33 dk~KfL--vp~~~tv~qf~~~ir~rl~---l~~~~alfl~Vn~~lp~~s~tm~elY~~~kdeDGFLY~~Ys 98 (104)
T PF02991_consen 33 DKKKFL--VPKDLTVGQFVYIIRKRLQ---LSPEQALFLFVNNTLPSTSSTMGELYEKYKDEDGFLYMTYS 98 (104)
T ss_dssp SSSEEE--EETTSBHHHHHHHHHHHTT-----TTS-EEEEBTTBESSTTSBHHHHHHHHB-TTSSEEEEEE
T ss_pred CccEEE--EcCCCchhhHHHHhhhhhc---CCCCceEEEEEcCcccchhhHHHHHHHHhCCCCCeEEEEec
Confidence 344443 6788999999999999988 65543 5666788777888888776 2246778888764
No 170
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=59.55 E-value=13 Score=30.10 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=37.9
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCC----CCCCCCeEEEeCCe-ec------CCCCchhhhccCCCcEEEEE
Q 015700 15 IEVKPEDKVSDVKKNIETVQGSD----VYPASQQMLIHQGK-VL------KDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 15 ieV~~~~TV~~LK~kI~~~~g~~----~ip~~~QrLIy~GK-iL------~D~~tL~dygI~~gs~I~v~ 73 (402)
|+|++++|+.+|-+.+.++.... .+..+.-.|++.+- .| +=+++|.++ +.+|+.|+|.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~Vt 69 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVT 69 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEE
Confidence 67899999999999999874300 01222334444332 12 225789999 9999988874
No 171
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=59.34 E-value=37 Score=32.05 Aligned_cols=48 Identities=19% Similarity=0.362 Sum_probs=31.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC---CeEE--EeCCee---cCCCCchhhh
Q 015700 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPAS---QQML--IHQGKV---LKDVTTLEEN 62 (402)
Q Consensus 12 ~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~---~QrL--Iy~GKi---L~D~~tL~dy 62 (402)
.+.+-|..+.||.||.+++..+.+ ++.+ ..|| ++++|+ |..+..|.++
T Consensus 35 ~~~~~vpk~~tV~Dll~~l~~k~~---~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l 90 (213)
T PF14533_consen 35 EYELLVPKTGTVSDLLEELQKKVG---FSEEGTGKLRLWEVSNHKIYKILSEDEPISSL 90 (213)
T ss_dssp EEEE--BTT-BHHHHHHHHHTT-------TT----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred EEEEEECCCCCHHHHHHHHHHHcC---CCcCCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence 477889999999999999999988 5544 4555 478876 5778888876
No 172
>PF12053 DUF3534: Domain of unknown function (DUF3534); InterPro: IPR021922 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 150 amino acids in length. This domain is found associated with PF00595 from PFAM. This domain has a conserved GILD sequence motif. ; PDB: 2NS5_A.
Probab=59.25 E-value=63 Score=29.00 Aligned_cols=74 Identities=16% Similarity=0.093 Sum_probs=40.5
Q ss_pred CEEEEEeCCCcEEEEEeC-CCCcHHHHHHHHHHHhCCC-CCCCCCe----EEE-eCCeecCCCCchhhhccCCCcEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVK-PEDKVSDVKKNIETVQGSD-VYPASQQ----MLI-HQGKVLKDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~-~~~TV~~LK~kI~~~~g~~-~ip~~~Q----rLI-y~GKiL~D~~tL~dygI~~gs~I~v~ 73 (402)
|||+|+. ....+.|-+. .+.||.+|-++--.++.+- ...++.. +|- -.|-+|+.+..|.+. +.+.+.|+.+
T Consensus 1 mkvtV~f-g~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~~~~~~~v~V~~l~~~dggiLd~DD~l~dV-~dd~d~liAv 78 (145)
T PF12053_consen 1 MKVTVCF-GRTRVVVPCGDGQLTVRDLIQQALRRYRKAKEKDPDYWVVVHHLEYTDGGILDPDDVLCDV-VDDRDQLIAV 78 (145)
T ss_dssp -EEEEEE-TTEEEEEEESSS---HHHHHHHHHHHHHHHTT--TTS-EEEEEEE-SSS-EE-TTS-HHHH-S-TTEEEEEE
T ss_pred CeEEEEe-CCeEEEEEeCCCCccHHHHHHHHhHhHHHhhccCCCceEEEeeEEecCCceeccccceeEe-ccChhhhhee
Confidence 8999995 5556777776 4589999877666554320 0222222 232 256688878888876 5577788777
Q ss_pred Eec
Q 015700 74 LTK 76 (402)
Q Consensus 74 v~k 76 (402)
..-
T Consensus 79 ydE 81 (145)
T PF12053_consen 79 YDE 81 (145)
T ss_dssp EEE
T ss_pred ecc
Confidence 654
No 173
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=58.99 E-value=80 Score=25.06 Aligned_cols=46 Identities=24% Similarity=0.395 Sum_probs=33.0
Q ss_pred HHHHHHhhCHHHHHHHHHcHHHHHHHhcCCCCCCCCcccccccccCCccccCCHHHHHHH-----HHHHHcCCCh
Q 015700 303 MLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAI-----ERLEAMGFDR 372 (402)
Q Consensus 303 ~lqqi~~~nP~l~q~I~~n~e~Fl~~l~~~~~~~~g~~~~~~~~~~~~~i~~t~ee~~ai-----~rL~~lGf~~ 372 (402)
+++++. .+|++++...+||++++.- ..||+||++|| .+|.++|-.-
T Consensus 8 ~~~~~~-~~~~~re~f~~dp~a~~~~-----------------------~~Lt~eE~~al~~rD~~~L~~lG~~~ 58 (77)
T cd07321 8 LLEQLL-VKPEVKERFKADPEAVLAE-----------------------YGLTPEEKAALLARDVGALYVLGVNP 58 (77)
T ss_pred HHHHHh-cCHHHHHHHHhCHHHHHHH-----------------------cCCCHHHHHHHHcCCHHHHHHcCCCH
Confidence 444443 5799999999999888643 25799999995 4577777543
No 174
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=58.77 E-value=10 Score=38.58 Aligned_cols=66 Identities=14% Similarity=0.050 Sum_probs=52.3
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC---eecCC--CCchhhhccCCCcE
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---KVLKD--VTTLEENKVAENSF 69 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~G---KiL~D--~~tL~dygI~~gs~ 69 (402)
.|.||..+|+.+.+.+-.+++|.-|-..+...... .+-+..+|++.= |.|.+ +.||.++||++..+
T Consensus 279 ~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg--~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDG--SDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred EEEEecCCccHHHHhhccccHHHHHHHHHHHhhcc--cccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 48899999988777778899999988888777643 566788998766 66643 67999999998765
No 175
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=58.27 E-value=27 Score=35.35 Aligned_cols=62 Identities=8% Similarity=0.139 Sum_probs=44.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEe
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~ 75 (402)
|+|+|. |+. +++....||.+|-+. .+ ++.+...+.++|+++.- ....++-|++||.|-++--
T Consensus 1 M~I~VN---Gk~--~el~e~~TL~dLL~~----L~---i~~~~VAVeVNgeIVpr-~~w~~t~LkeGD~IEII~~ 62 (326)
T PRK11840 1 MRIRLN---GEP--RQVPAGLTIAALLAE----LG---LAPKKVAVERNLEIVPR-SEYGQVALEEGDELEIVHF 62 (326)
T ss_pred CEEEEC---CEE--EecCCCCcHHHHHHH----cC---CCCCeEEEEECCEECCH-HHcCccccCCCCEEEEEEE
Confidence 555554 665 455667888887764 46 77888888999999852 2345566899999988854
No 176
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=57.30 E-value=18 Score=34.11 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=32.2
Q ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015700 174 ATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (402)
Q Consensus 174 ~~v~~i~~M-G~~~f~reqV~~ALrAafnNPdRAvEyL~~ 212 (402)
.+|.+|-++ | +.=-+|..||..+-+|-|.|++||.-
T Consensus 6 ~~ik~LR~~tg---a~~~~ck~AL~~~~gd~~~A~~~lr~ 42 (198)
T PRK12332 6 KLVKELREKTG---AGMMDCKKALEEANGDMEKAIEWLRE 42 (198)
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 468888887 7 88889999999999999999999975
No 177
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=56.94 E-value=94 Score=24.39 Aligned_cols=65 Identities=18% Similarity=0.183 Sum_probs=40.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eC----CeecCCC-Cchhh--hccCCCcEEEEEEe
Q 015700 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQ----GKVLKDV-TTLEE--NKVAENSFVVVMLT 75 (402)
Q Consensus 10 g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLI--y~----GKiL~D~-~tL~d--ygI~~gs~I~v~v~ 75 (402)
+...+|.|+.++|..+|-..+.++++.+. .+..-.|+ +. .+.|.|+ ..|.- .....+....++++
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~-~~~~y~L~ev~~~~~~er~L~~~e~pl~~~~~~~~~~~~~~F~lr 85 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDD-DPEDYALVEVLGDGGLERLLLPDECPLQIQLNAPRQREDLRFLLR 85 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcC-CcccEEEEEEECCceEEEEeCCCCChHHHHHhcCCCCCcEEEEEe
Confidence 55678999999999999999999999321 34444553 22 2466664 44432 22333334444444
No 178
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=56.42 E-value=35 Score=33.75 Aligned_cols=70 Identities=7% Similarity=0.184 Sum_probs=51.5
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCC---CCchhhhccCCCcEEEE
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD---VTTLEENKVAENSFVVV 72 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D---~~tL~dygI~~gs~I~v 72 (402)
.|-||..+|+++...+....|+.+|...|.-..+.+ ..|-...--|--+.+.+ .++|..+++..-++|++
T Consensus 212 rlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~-~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 212 RLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDG-LDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred EEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCC-CCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 578998899999999999999999999999998833 21112222245555643 47899999988776654
No 179
>cd07921 PCA_45_Doxase_A_like Subunit A of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and similar enzymes. This subfamily includes the A subunit of protocatechuate (PCA) 4,5-dioxygenase (LigAB) and two subfamilies of unknown function. The A subunit is the smaller, non-catalytic subunit of LigAB. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds. PCA 4,5-dioxygenase is one of the aromatic ring opening dioxygenases which play key roles in the degradation of aromatic compounds. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit.
Probab=55.94 E-value=37 Score=28.87 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=33.8
Q ss_pred hHHHHHHHHhhCHHHHHHHHHcHHHHHHHhcCCCCCCCCcccccccccCCccccCCHHHHHHH-----HHHHHcC
Q 015700 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAI-----ERLEAMG 369 (402)
Q Consensus 300 L~~~lqqi~~~nP~l~q~I~~n~e~Fl~~l~~~~~~~~g~~~~~~~~~~~~~i~~t~ee~~ai-----~rL~~lG 369 (402)
|..++.+|. .|++++...+||+++++- -.||+||++|| .+|.++|
T Consensus 16 LN~f~~sL~--~a~~Re~F~aD~eAy~~~-----------------------~gLTeEe~~AV~~rD~~~Li~lG 65 (106)
T cd07921 16 LNKMCMSLN--KAENREAFKADEEAYCDK-----------------------FGLTEEQKQAVLDRDWLRLLELG 65 (106)
T ss_pred HHHHHHHHC--CHHHHHHHHhCHHHHHHH-----------------------cCCCHHHHHHHHhCCHHHHHHhc
Confidence 556777775 899999999999888643 24788888885 4466776
No 180
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=55.55 E-value=71 Score=26.86 Aligned_cols=74 Identities=19% Similarity=0.097 Sum_probs=43.8
Q ss_pred EEEEeCC-CcEEEEEeCCCCcHHHHHHHHHHHh--CCCC-CCCC-CeEEEeCCee--cCCCCchhhh-----ccCCCcEE
Q 015700 3 VFVKTLK-GTHFEIEVKPEDKVSDVKKNIETVQ--GSDV-YPAS-QQMLIHQGKV--LKDVTTLEEN-----KVAENSFV 70 (402)
Q Consensus 3 I~VKtl~-g~~~~ieV~~~~TV~~LK~kI~~~~--g~~~-ip~~-~QrLIy~GKi--L~D~~tL~dy-----gI~~gs~I 70 (402)
|.|+..+ ...+++.+++++|+.+|.+.+-.+. ..+. -+.+ +-.|--.|+. |..+..|.+| .++.|..+
T Consensus 20 v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~ 99 (108)
T smart00144 20 IVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREP 99 (108)
T ss_pred EEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCc
Confidence 4454433 4568999999999999998887762 1110 1122 3333334432 4444455554 36778888
Q ss_pred EEEEec
Q 015700 71 VVMLTK 76 (402)
Q Consensus 71 ~v~v~k 76 (402)
+|++..
T Consensus 100 ~L~L~~ 105 (108)
T smart00144 100 HLVLMT 105 (108)
T ss_pred eEEEEe
Confidence 887754
No 181
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=55.53 E-value=62 Score=26.59 Aligned_cols=69 Identities=17% Similarity=0.173 Sum_probs=44.6
Q ss_pred EEEEeCCCcEEEEEeCC-----CCcHHHHHHHHHHHhCCCCCCC-CCeEEEeCC---ee--cCCCCchhhh-----ccCC
Q 015700 3 VFVKTLKGTHFEIEVKP-----EDKVSDVKKNIETVQGSDVYPA-SQQMLIHQG---KV--LKDVTTLEEN-----KVAE 66 (402)
Q Consensus 3 I~VKtl~g~~~~ieV~~-----~~TV~~LK~kI~~~~g~~~ip~-~~QrLIy~G---Ki--L~D~~tL~dy-----gI~~ 66 (402)
|+|+ .+|....|.+.. +.+..+|+.+|.+.++ ++. ....|.|.. .. |.++.-|.++ +-..
T Consensus 3 vKv~-y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~---l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~ 78 (91)
T cd06398 3 VKVK-YGGTLRRFTFPVAENQLDLNMDGLREKVEELFS---LSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSR 78 (91)
T ss_pred EEEE-eCCEEEEEEeccccccCCCCHHHHHHHHHHHhC---CCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCC
Confidence 4444 355566666664 7899999999999998 766 566777753 22 4444444433 2335
Q ss_pred CcEEEEEEe
Q 015700 67 NSFVVVMLT 75 (402)
Q Consensus 67 gs~I~v~v~ 75 (402)
..+|.+.++
T Consensus 79 ~~~lrl~v~ 87 (91)
T cd06398 79 LNPLRIDVT 87 (91)
T ss_pred CceEEEEEE
Confidence 677777765
No 182
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=55.28 E-value=23 Score=38.03 Aligned_cols=9 Identities=33% Similarity=0.586 Sum_probs=6.5
Q ss_pred HHHHHhcCC
Q 015700 324 DFLRLINEP 332 (402)
Q Consensus 324 ~Fl~~l~~~ 332 (402)
.||..|+..
T Consensus 416 yFL~VLnsD 424 (574)
T PF07462_consen 416 YFLDVLNSD 424 (574)
T ss_pred HHHHHHhhh
Confidence 688887754
No 183
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=55.24 E-value=86 Score=24.51 Aligned_cols=52 Identities=21% Similarity=0.177 Sum_probs=37.1
Q ss_pred EEEEeCCCc----EEEEEeCCCCcHHHHHHHHHHHhCCCCC--CCCCeEEE-e---CC--eecCCCC
Q 015700 3 VFVKTLKGT----HFEIEVKPEDKVSDVKKNIETVQGSDVY--PASQQMLI-H---QG--KVLKDVT 57 (402)
Q Consensus 3 I~VKtl~g~----~~~ieV~~~~TV~~LK~kI~~~~g~~~i--p~~~QrLI-y---~G--KiL~D~~ 57 (402)
|+|-..++. ..+|.|..+.|+.+|-..+..+++ + .+..-.|+ + .| +.|.|+.
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~---l~~~~~~y~L~~~~~~~~~er~L~~~E 68 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFG---LAEDPSDYCLVEVEESGGEERPLDDDE 68 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTT---TSSSGGGEEEEEEECTTTEEEEETTTS
T ss_pred EEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhC---CCCCCCCEEEEEEEcCCCEEEEcCCCC
Confidence 455555666 778999999999999999999999 5 23444563 2 23 5676654
No 184
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=55.08 E-value=19 Score=35.96 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=32.3
Q ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015700 174 ATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (402)
Q Consensus 174 ~~v~~i~~M-G~~~f~reqV~~ALrAafnNPdRAvEyL~~ 212 (402)
..|.+|-++ | +.=-+|..||..+-+|-|+|++||.-
T Consensus 6 ~~IK~LRe~Tg---agm~dCKkAL~e~~gDiekAi~~LRk 42 (290)
T TIGR00116 6 QLVKELRERTG---AGMMDCKKALTEANGDFEKAIKNLRE 42 (290)
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 468888887 7 88889999999999999999999975
No 185
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=53.15 E-value=30 Score=29.90 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=31.3
Q ss_pred cCCHHHHHHHHHHHH-cCCChHHHHHHHHHhCCCHHHHHHHHh
Q 015700 353 TVTPEEREAIERLEA-MGFDRALVLEVFFACNKNEELAANYLL 394 (402)
Q Consensus 353 ~~t~ee~~ai~rL~~-lGf~~~~viqay~acdkneelAan~L~ 394 (402)
.++++| |+-+++ -|-+|..+++|+.+|++|---|.-+|-
T Consensus 76 ~i~~eD---I~lV~eq~gvs~e~A~~AL~~~~gDl~~AI~~L~ 115 (116)
T TIGR00264 76 EITEDD---IELVMKQCNVSKEEARRALEECGGDLAEAIMKLE 115 (116)
T ss_pred CCCHHH---HHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHhh
Confidence 466666 555554 489999999999999999999888774
No 186
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=52.69 E-value=51 Score=26.50 Aligned_cols=53 Identities=23% Similarity=0.277 Sum_probs=41.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe-CCeecCCCCchhhhccCCCcEEEEEE
Q 015700 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH-QGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 10 g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy-~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
+..+.+.++...||+++-+. .| +|..+..+|+ +|+...=+ |-+++|+.|.|.-
T Consensus 22 ~~~~~~~~~~~~tvkd~IEs----LG---VP~tEV~~i~vNG~~v~~~-----~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIES----LG---VPHTEVGLILVNGRPVDFD-----YRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHHHH----cC---CChHHeEEEEECCEECCCc-----ccCCCCCEEEEEe
Confidence 45678899999999887754 68 9999987764 88876543 6788999998873
No 187
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=52.34 E-value=50 Score=27.36 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=42.8
Q ss_pred EEEEEeC-CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC----CeEEEeCCe--ecCCCCchhhh-----ccCCCcE
Q 015700 2 KVFVKTL-KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS----QQMLIHQGK--VLKDVTTLEEN-----KVAENSF 69 (402)
Q Consensus 2 kI~VKtl-~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~----~QrLIy~GK--iL~D~~tL~dy-----gI~~gs~ 69 (402)
+|.|... .+..++|.|+.+.|+.+|...+-.+.... +... +-.|--.|+ -|..+..|.+| .++.+..
T Consensus 18 ~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~-~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~ 96 (106)
T PF00794_consen 18 KVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKD-LLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKD 96 (106)
T ss_dssp EEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHH-TT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--
T ss_pred EEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhh-cCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCC
Confidence 4667766 46679999999999999988887772110 1111 233333443 25566677777 4566777
Q ss_pred EEEEEec
Q 015700 70 VVVMLTK 76 (402)
Q Consensus 70 I~v~v~k 76 (402)
++|++-.
T Consensus 97 ~~L~Lv~ 103 (106)
T PF00794_consen 97 PHLVLVH 103 (106)
T ss_dssp EEEEEEE
T ss_pred cEEEEEe
Confidence 7777643
No 188
>PF08587 UBA_2: Ubiquitin associated domain (UBA) ; InterPro: IPR013896 This is a UBA (ubiquitin associated) protein []. Ubiquitin is involved in intracellular proteolysis. ; GO: 0004674 protein serine/threonine kinase activity; PDB: 3H4J_B.
Probab=51.39 E-value=3.7 Score=29.67 Aligned_cols=20 Identities=30% Similarity=0.692 Sum_probs=12.6
Q ss_pred HHHHH-HcCCCCCCHHHHHHHHHH
Q 015700 176 VQQIL-DMGGGSWDRETVIRALRA 198 (402)
Q Consensus 176 v~~i~-~MG~~~f~reqV~~ALrA 198 (402)
|..|- .|| |+|++|..||+.
T Consensus 6 v~~Ls~tMG---Y~kdeI~eaL~~ 26 (46)
T PF08587_consen 6 VSKLSKTMG---YDKDEIYEALES 26 (46)
T ss_dssp HHHHHCTT------HHHHHHHCCS
T ss_pred HHHHHHHhC---CCHHHHHHHHHc
Confidence 33443 399 999999999986
No 189
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=50.69 E-value=1.4e+02 Score=24.34 Aligned_cols=60 Identities=12% Similarity=0.066 Sum_probs=40.3
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeec-CCCCchhhh--ccCCCcEEEEEEec
Q 015700 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVL-KDVTTLEEN--KVAENSFVVVMLTK 76 (402)
Q Consensus 14 ~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~-QrLIy~GKiL-~D~~tL~dy--gI~~gs~I~v~v~k 76 (402)
.+-|+.+.||.++...|..+.+ +.+++ .-|..+...+ ..+.++.++ .-+++.+++|..+.
T Consensus 19 kflv~~~~tv~~~~~~lrk~L~---l~~~~slflyvnn~f~p~~d~~~g~LY~~~~~dGfLyi~Ys~ 82 (87)
T cd01612 19 VFKISATQSFQAVIDFLRKRLK---LKASDSLFLYINNSFAPSPDENVGNLYRCFGTNGELIVSYCK 82 (87)
T ss_pred EEEeCCCCCHHHHHHHHHHHhC---CCccCeEEEEECCccCCCchhHHHHHHHhcCCCCEEEEEEeC
Confidence 3558999999999999999988 65554 3444444324 345666554 22678888887643
No 190
>PF13556 HTH_30: PucR C-terminal helix-turn-helix domain; PDB: 3ONQ_B.
Probab=49.83 E-value=18 Score=26.88 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=18.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcc
Q 015700 374 LVLEVFFACNKNEELAANYLLDH 396 (402)
Q Consensus 374 ~viqay~acdkneelAan~L~~~ 396 (402)
..+.+|+.|+.|-..||.-|+=+
T Consensus 3 ~TL~~yl~~~~n~~~tA~~L~iH 25 (59)
T PF13556_consen 3 ETLRAYLENNGNISKTARALHIH 25 (59)
T ss_dssp -HHHHHHHTTT-HHHHHHHHTS-
T ss_pred hHHHHHHHcCCCHHHHHHHHCCC
Confidence 46899999999999999988743
No 191
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=49.69 E-value=67 Score=25.98 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=28.2
Q ss_pred EEEEEeCCCcEEEEEeCC--CCcHHHHHHHHHHHhCCCCCC
Q 015700 2 KVFVKTLKGTHFEIEVKP--EDKVSDVKKNIETVQGSDVYP 40 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~--~~TV~~LK~kI~~~~g~~~ip 40 (402)
+|++. .+|.+..+.+++ +.+..+|++.|...++ +.
T Consensus 2 ~vKat-y~~d~~rf~~~~~~~~~~~~L~~ev~~rf~---l~ 38 (81)
T cd06396 2 NLKVT-YNGESQSFLVSDSENTTWASVEAMVKVSFG---LN 38 (81)
T ss_pred EEEEE-ECCeEEEEEecCCCCCCHHHHHHHHHHHhC---CC
Confidence 34444 467788888988 7799999999999999 66
No 192
>PF15652 Tox-SHH: HNH/Endo VII superfamily toxin with a SHH signature
Probab=49.25 E-value=25 Score=29.59 Aligned_cols=30 Identities=23% Similarity=0.485 Sum_probs=27.4
Q ss_pred CchHHHHHHHHHHcCCCCCCHHHHHHHHHHhhC
Q 015700 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYN 201 (402)
Q Consensus 169 g~~~e~~v~~i~~MG~~~f~reqV~~ALrAafn 201 (402)
-.|+..++.+|.+-| |+++....+||++|+
T Consensus 68 ~~Ef~~~~~eM~dAG---V~~~~~~~~l~~~Yk 97 (100)
T PF15652_consen 68 QEEFNNSYREMFDAG---VSKECRKKALKAQYK 97 (100)
T ss_pred HHHHHHHHHHHHHcC---CCHHHHHHHHHHHHh
Confidence 467889999999999 999999999999886
No 193
>CHL00098 tsf elongation factor Ts
Probab=49.16 E-value=28 Score=32.81 Aligned_cols=36 Identities=28% Similarity=0.293 Sum_probs=31.9
Q ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015700 174 ATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (402)
Q Consensus 174 ~~v~~i~~M-G~~~f~reqV~~ALrAafnNPdRAvEyL~~ 212 (402)
.+|.+|-++ | ..=-+|..||..+-+|-|.|++||..
T Consensus 3 ~~ik~LR~~Tg---ag~~dck~AL~e~~gd~~~A~~~Lr~ 39 (200)
T CHL00098 3 ELVKELRDKTG---AGMMDCKKALQEANGDFEKALESLRQ 39 (200)
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 467888887 7 77889999999999999999999986
No 194
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=48.82 E-value=29 Score=24.72 Aligned_cols=32 Identities=22% Similarity=0.495 Sum_probs=24.2
Q ss_pred hHHHHHHHHhhCHHHHHHHHH--cHHHHHHHhcCC
Q 015700 300 LQPMLQELGKQNPHLMRLIQE--HQTDFLRLINEP 332 (402)
Q Consensus 300 L~~~lqqi~~~nP~l~q~I~~--n~e~Fl~~l~~~ 332 (402)
|..+|+.+ ++||+|.+.+.+ |+++|+.+..+.
T Consensus 6 l~~Fl~~~-~~d~~l~~~l~~~~~~~e~~~lA~~~ 39 (49)
T PF07862_consen 6 LKAFLEKV-KSDPELREQLKACQNPEEVVALAREA 39 (49)
T ss_pred HHHHHHHH-hcCHHHHHHHHhcCCHHHHHHHHHHc
Confidence 44566655 478999999987 899999987543
No 195
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=48.76 E-value=40 Score=29.12 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=32.9
Q ss_pred HHHHHHHHHc-CCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015700 173 EATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (402)
Q Consensus 173 e~~v~~i~~M-G~~~f~reqV~~ALrAafnNPdRAvEyL~~ 212 (402)
++.|.-+++- | -.|+.+++||+.+-++.-.|+-||..
T Consensus 77 ~edI~lv~~q~g---vs~~~A~~AL~~~~gDl~~AI~~L~~ 114 (115)
T PRK06369 77 EEDIELVAEQTG---VSEEEARKALEEANGDLAEAILKLSS 114 (115)
T ss_pred HHHHHHHHHHHC---cCHHHHHHHHHHcCCcHHHHHHHHhc
Confidence 4678888885 7 89999999999999999999999965
No 196
>PF09722 DUF2384: Protein of unknown function (DUF2384); InterPro: IPR024467 This domain is found predominantly in proteobacterial proteins. Its function in unknown.
Probab=48.63 E-value=42 Score=24.28 Aligned_cols=20 Identities=10% Similarity=0.358 Sum_probs=16.2
Q ss_pred HHHHHhhCCHHHHHHHHHcC
Q 015700 194 RALRAAYNNPERAVEYLYSG 213 (402)
Q Consensus 194 ~ALrAafnNPdRAvEyL~~G 213 (402)
++++.-|.|+++|..||.+-
T Consensus 2 ~~a~~vfgd~~~a~~Wl~~p 21 (54)
T PF09722_consen 2 KQAEEVFGDEDKARRWLRTP 21 (54)
T ss_pred hHHHHHHCCHHHHHHHHHCh
Confidence 45677899999999999643
No 197
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=48.33 E-value=17 Score=25.12 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHhhCCHHHHHHHHHcCCC
Q 015700 187 WDRETVIRALRAAYNNPERAVEYLYSGIP 215 (402)
Q Consensus 187 f~reqV~~ALrAafnNPdRAvEyL~~GIP 215 (402)
|+|+-+..||+.+-+|..+|.+.| ||+
T Consensus 5 ~E~~~i~~aL~~~~gn~~~aA~~L--gis 31 (42)
T PF02954_consen 5 FEKQLIRQALERCGGNVSKAARLL--GIS 31 (42)
T ss_dssp HHHHHHHHHHHHTTT-HHHHHHHH--TS-
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH--CCC
Confidence 788999999999999999999998 554
No 198
>PRK09377 tsf elongation factor Ts; Provisional
Probab=48.29 E-value=28 Score=34.75 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=32.4
Q ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015700 174 ATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (402)
Q Consensus 174 ~~v~~i~~M-G~~~f~reqV~~ALrAafnNPdRAvEyL~~ 212 (402)
..|.+|-++ | +.=-+|..||..+-+|-|.|++||..
T Consensus 7 ~~IK~LR~~Tg---agm~dCKkAL~e~~gD~ekAi~~Lrk 43 (290)
T PRK09377 7 ALVKELRERTG---AGMMDCKKALTEADGDIEKAIEWLRK 43 (290)
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 478888887 7 88889999999999999999999975
No 199
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=47.94 E-value=25 Score=33.05 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCC
Q 015700 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNN 202 (402)
Q Consensus 171 ~~e~~v~~i~~MG~~~f~reqV~~ALrAafnN 202 (402)
..+++|.-|+.+| |.|.++.+|++...++
T Consensus 143 ~~~ea~~AL~~LG---y~~~ea~~al~~v~~~ 171 (196)
T PRK13901 143 KFKELEQSIVNMG---FDRKLVNSAIKEIMLL 171 (196)
T ss_pred cHHHHHHHHHHcC---CCHHHHHHHHHHHhcc
Confidence 3688999999999 9999999999987663
No 200
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=47.23 E-value=16 Score=25.31 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=20.2
Q ss_pred CChHHHHHHHHHhCCCHHHHHHHH
Q 015700 370 FDRALVLEVFFACNKNEELAANYL 393 (402)
Q Consensus 370 f~~~~viqay~acdkneelAan~L 393 (402)
|++..+.+|+..|++|...||..|
T Consensus 5 ~E~~~i~~aL~~~~gn~~~aA~~L 28 (42)
T PF02954_consen 5 FEKQLIRQALERCGGNVSKAARLL 28 (42)
T ss_dssp HHHHHHHHHHHHTTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 457788999999999999999887
No 201
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=45.80 E-value=45 Score=28.76 Aligned_cols=41 Identities=20% Similarity=0.162 Sum_probs=32.7
Q ss_pred ccCCHHHHHHHHHHHH-cCCChHHHHHHHHHhCCCHHHHHHHHhc
Q 015700 352 VTVTPEEREAIERLEA-MGFDRALVLEVFFACNKNEELAANYLLD 395 (402)
Q Consensus 352 i~~t~ee~~ai~rL~~-lGf~~~~viqay~acdkneelAan~L~~ 395 (402)
..++++| |+-+++ -|-+|..+++|+..|+.|---|.-+|-+
T Consensus 73 ~~i~~ed---I~lv~~q~gvs~~~A~~AL~~~~gDl~~AI~~L~~ 114 (115)
T PRK06369 73 VEIPEED---IELVAEQTGVSEEEARKALEEANGDLAEAILKLSS 114 (115)
T ss_pred CCCCHHH---HHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHHHhc
Confidence 3567777 555554 5899999999999999999999887743
No 202
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=45.32 E-value=23 Score=31.49 Aligned_cols=63 Identities=14% Similarity=0.205 Sum_probs=40.3
Q ss_pred CCCcHHHHHHHHHHHhCCCC--CCCCCeEEEe-----------------CC-eecCCCCchhhhccCCCcEEEEEEecCC
Q 015700 19 PEDKVSDVKKNIETVQGSDV--YPASQQMLIH-----------------QG-KVLKDVTTLEENKVAENSFVVVMLTKSK 78 (402)
Q Consensus 19 ~~~TV~~LK~kI~~~~g~~~--ip~~~QrLIy-----------------~G-KiL~D~~tL~dygI~~gs~I~v~v~k~k 78 (402)
.+.|+.+|-..|.+....-. --.=+..++| .| |-.+|+++|..++++-||+|.|-++.++
T Consensus 60 ~datL~ELtsLvkevnpeaR~kgt~f~fa~Vf~d~~~~~y~~RevG~t~~g~Kg~ddnktL~~~kf~iGD~lDVaI~~p~ 139 (151)
T KOG3391|consen 60 MDATLRELTSLVKEVNPEARKKGTSFDFAVVFPDKKSPRYIVREVGTTCLGRKGIDDNKTLQQTKFEIGDYLDVAITPPN 139 (151)
T ss_pred hhhhHHHHHHHHHHcCHHHhccCceEEEEEEeccCCCCCceeeeecccccCcccCCccchhhhCCccccceEEEEecCcc
Confidence 46788888888876421000 0001223333 23 3357889999999999999999998766
Q ss_pred CCC
Q 015700 79 VSS 81 (402)
Q Consensus 79 ~~~ 81 (402)
..+
T Consensus 140 ~~~ 142 (151)
T KOG3391|consen 140 RRP 142 (151)
T ss_pred cCC
Confidence 443
No 203
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=44.39 E-value=24 Score=32.86 Aligned_cols=29 Identities=14% Similarity=0.385 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCC
Q 015700 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNN 202 (402)
Q Consensus 171 ~~e~~v~~i~~MG~~~f~reqV~~ALrAafnN 202 (402)
..++.+..|+.+| |.+.++.+|++....+
T Consensus 146 ~~~e~~~aL~~LG---y~~~e~~~ai~~~~~~ 174 (191)
T TIGR00084 146 ARDELFEALVSLG---YKPQEIQQALKKIKNK 174 (191)
T ss_pred hHHHHHHHHHHcC---CCHHHHHHHHHHHhhc
Confidence 3578999999999 9999999999998653
No 204
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=40.69 E-value=1.1e+02 Score=33.14 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=14.5
Q ss_pred ccccCCchHHHHHHHHHHcC
Q 015700 164 SNLVAGSNLEATVQQILDMG 183 (402)
Q Consensus 164 s~l~~g~~~e~~v~~i~~MG 183 (402)
....+|+.-.....+|+.=|
T Consensus 350 dQV~tGeae~~~~e~Iv~~~ 369 (574)
T PF07462_consen 350 DQVTTGEAENAQPENIVPEG 369 (574)
T ss_pred ccceeccccccchhhhhcCc
Confidence 45777777777777888765
No 205
>PF12616 DUF3775: Protein of unknown function (DUF3775); InterPro: IPR022254 This domain family is found in bacteria, and is approximately 80 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=40.64 E-value=56 Score=26.00 Aligned_cols=41 Identities=27% Similarity=0.502 Sum_probs=31.4
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhhCC-HHHHHHHHHcCCC
Q 015700 174 ATVQQILDMGGGSWDRETVIRALRAAYNN-PERAVEYLYSGIP 215 (402)
Q Consensus 174 ~~v~~i~~MG~~~f~reqV~~ALrAafnN-PdRAvEyL~~GIP 215 (402)
.-+--||=+|+|-|+-++-..|++-|-.+ -.+.++||+ |.|
T Consensus 19 aeLvALmwiGRGd~~~eew~~a~~~A~~~~~~~ta~YLl-~~p 60 (75)
T PF12616_consen 19 AELVALMWIGRGDFEAEEWEEAVAEARERASARTADYLL-GTP 60 (75)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhccchHHHHHH-cCC
Confidence 34556777999999999999999888555 457889986 444
No 206
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=40.46 E-value=47 Score=27.29 Aligned_cols=55 Identities=20% Similarity=0.203 Sum_probs=33.5
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe-CC------eecCCCC---ch--hhhccCCCcEEEEEE
Q 015700 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH-QG------KVLKDVT---TL--EENKVAENSFVVVML 74 (402)
Q Consensus 15 ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy-~G------KiL~D~~---tL--~dygI~~gs~I~v~v 74 (402)
++++...||.+|-..|...+. ..+-+|+. .| -+|-++. .| .++-+++||.|.++-
T Consensus 23 ~~~~~~~tV~dll~~L~~~~~-----~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P 89 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNLL-----EERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFIS 89 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhCc-----hhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEEC
Confidence 344456799999999988753 23333332 22 1232322 23 357799999998873
No 207
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=39.87 E-value=77 Score=27.23 Aligned_cols=38 Identities=11% Similarity=0.211 Sum_probs=32.2
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeec
Q 015700 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVL 53 (402)
Q Consensus 13 ~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL 53 (402)
-.+.|++++|+..+...|....+ ++..++-++|=..-.
T Consensus 47 ~k~~i~~t~tfa~vi~Flkk~Lk---l~as~slflYVN~sF 84 (116)
T KOG3439|consen 47 SKFKINPTQTFAKVILFLKKFLK---LQASDSLFLYVNNSF 84 (116)
T ss_pred ceEEeCcchhhHHHHHHHHHHhC---CcccCeEEEEEcCcc
Confidence 45788999999999999999999 889999888855544
No 208
>PF14327 CSTF2_hinge: Hinge domain of cleavage stimulation factor subunit 2; PDB: 4EBA_G.
Probab=39.85 E-value=27 Score=28.15 Aligned_cols=28 Identities=32% Similarity=0.597 Sum_probs=15.2
Q ss_pred HHHHHHHHhCccchHHHHHHHHhhCHHHHHHH
Q 015700 287 QALRTMVQANPQILQPMLQELGKQNPHLMRLI 318 (402)
Q Consensus 287 ~~lRq~vq~nP~lL~~~lqqi~~~nP~l~q~I 318 (402)
.+|+.++++||+.+..+|+ +||+|.-.+
T Consensus 36 ~~mK~l~~~~p~~ar~lL~----~nPqLa~Al 63 (84)
T PF14327_consen 36 SQMKQLAQQNPEQARQLLQ----QNPQLAYAL 63 (84)
T ss_dssp HHHHHHHC----HHHHHHH----S-THHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHH----HCcHHHHHH
Confidence 4677778888876665555 677776544
No 209
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=38.84 E-value=34 Score=32.25 Aligned_cols=27 Identities=11% Similarity=0.324 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHHhh
Q 015700 171 NLEATVQQILDMGGGSWDRETVIRALRAAY 200 (402)
Q Consensus 171 ~~e~~v~~i~~MG~~~f~reqV~~ALrAaf 200 (402)
..++++.-|+.+| |.|.++.+|++...
T Consensus 154 ~~~ea~~AL~~LG---y~~~ea~~av~~~~ 180 (203)
T PRK14602 154 VFRDALAGLANLG---YGEEEARPVLKEVL 180 (203)
T ss_pred hHHHHHHHHHHcC---CCHHHHHHHHHHHh
Confidence 3678999999999 99999999999885
No 210
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=38.59 E-value=48 Score=32.09 Aligned_cols=71 Identities=18% Similarity=0.354 Sum_probs=45.7
Q ss_pred EEEEeCC--CcEE----EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe----CCee--cCCCCchhhhccCCCcEE
Q 015700 3 VFVKTLK--GTHF----EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH----QGKV--LKDVTTLEENKVAENSFV 70 (402)
Q Consensus 3 I~VKtl~--g~~~----~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy----~GKi--L~D~~tL~dygI~~gs~I 70 (402)
|++|..+ .+++ .+-|+.+.+|.+|-..|.+..| +|.+.--++| .+++ |+.+.++....|.+||.|
T Consensus 71 lFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g---~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi 147 (249)
T PF12436_consen 71 LFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAG---LPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDII 147 (249)
T ss_dssp EEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT-----TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEE
T ss_pred EEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcC---CCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEE
Confidence 5666543 2333 2578889999999999999999 8887665555 3443 677899999999999998
Q ss_pred EEEEec
Q 015700 71 VVMLTK 76 (402)
Q Consensus 71 ~v~v~k 76 (402)
++-...
T Consensus 148 ~fQ~~~ 153 (249)
T PF12436_consen 148 CFQRAP 153 (249)
T ss_dssp EEEE--
T ss_pred EEEecc
Confidence 877643
No 211
>cd07923 Gallate_dioxygenase_C The C-terminal domain of Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of the PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. This model represents the C-terminal domain, which is similar to the A subunit of PCA 4,5-dioxygenase (or LigAB). The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. Since enzymes in this subfamily have fused A and B subunits, the dimer interface may resemble the tetramer interface of classical LigAB enzymes. This enzyme belongs to the class III extradiol dioxygenase family, composed of enzymes whi
Probab=38.50 E-value=1e+02 Score=25.65 Aligned_cols=45 Identities=22% Similarity=0.283 Sum_probs=31.9
Q ss_pred hHHHHHHHHhhCHHHHHHHHHcHHHHHHHhcCCCCCCCCcccccccccCCccccCCHHHHHHHH-----HHHHcC
Q 015700 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIE-----RLEAMG 369 (402)
Q Consensus 300 L~~~lqqi~~~nP~l~q~I~~n~e~Fl~~l~~~~~~~~g~~~~~~~~~~~~~i~~t~ee~~ai~-----rL~~lG 369 (402)
|..++.+|. .|+.++...++|+.+++- --||+||+++|. +|..+|
T Consensus 8 LN~f~~sL~--~a~~RerF~~D~ea~~~e-----------------------~gLt~Ee~~av~~rD~~~li~~G 57 (94)
T cd07923 8 INRFLHRLI--EPAHRERFLEDPEALFDE-----------------------AGLTEEERTLIRNRDWIGMIRYG 57 (94)
T ss_pred HHHHHHHHC--CHHHHHHHHhCHHHHHHH-----------------------cCCCHHHHHHHHcchHHHHHHcc
Confidence 456777774 788888888888877542 247888888854 466666
No 212
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=38.24 E-value=1.1e+02 Score=25.44 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=31.9
Q ss_pred EEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe
Q 015700 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH 48 (402)
Q Consensus 5 VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy 48 (402)
++..+|.+..+.|+.+.+..+|+.++.+..+ +... ..|-|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~---~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFG---AGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhC---CCCc-eEEEE
Confidence 4556788888999999999999999999998 5544 44433
No 213
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=36.93 E-value=95 Score=24.95 Aligned_cols=63 Identities=13% Similarity=0.221 Sum_probs=39.7
Q ss_pred EEEeCCC-cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCCCchhhhccCCCcEEEEEEe
Q 015700 4 FVKTLKG-THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVLKDVTTLEENKVAENSFVVVMLT 75 (402)
Q Consensus 4 ~VKtl~g-~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy--~GKiL~D~~tL~dygI~~gs~I~v~v~ 75 (402)
.|++.+. .++-|-. .++.+|+.|...+.+ ++.+..+|+. .|.+++|+.-+.. +.++ ++.|++.
T Consensus 6 kv~~~~r~~k~Gv~A---~sL~eL~~K~~~~l~---~~~~~~~lvL~eDGT~VddEeyF~t--Lp~n-T~lm~L~ 71 (78)
T PF02017_consen 6 KVRNHDRSVKKGVAA---SSLEELLEKACDKLQ---LPEEPVRLVLEEDGTEVDDEEYFQT--LPDN-TVLMLLE 71 (78)
T ss_dssp EEEETTSSCEEEEEE---SSHHHHHHHHHHHHT----SSSTCEEEETTTTCBESSCHHHCC--SSSS-EEEEEEE
T ss_pred EEecCCCCceEeEEc---CCHHHHHHHHHHHhC---CCCcCcEEEEeCCCcEEccHHHHhh--CCCC-CEEEEEC
Confidence 4555443 3344444 479999999999999 8777777764 7888887654442 3344 4444443
No 214
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=35.81 E-value=1.2e+02 Score=24.20 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=35.9
Q ss_pred EEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC
Q 015700 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG 50 (402)
Q Consensus 5 VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~G 50 (402)
|-..+|+.-.+.+.+..||+++-.++.++.| +..+...++.-|
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRg---l~~~~~~vf~~g 46 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRG---INYAAVDLFLVG 46 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcC---CChhHEEEEEec
Confidence 4456888888999999999999999999999 777777666545
No 215
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=35.39 E-value=77 Score=27.41 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=31.7
Q ss_pred HHHHHHHHHc-CCCCCCHHHHHHHHHHhhCCHHHHHHHHH
Q 015700 173 EATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLY 211 (402)
Q Consensus 173 e~~v~~i~~M-G~~~f~reqV~~ALrAafnNPdRAvEyL~ 211 (402)
++-|.-+++- | -+|+.+++||+.+-++.-.|+-||.
T Consensus 79 ~eDI~lV~eq~g---vs~e~A~~AL~~~~gDl~~AI~~L~ 115 (116)
T TIGR00264 79 EDDIELVMKQCN---VSKEEARRALEECGGDLAEAIMKLE 115 (116)
T ss_pred HHHHHHHHHHhC---cCHHHHHHHHHHcCCCHHHHHHHhh
Confidence 4578888885 7 8999999999999999999999984
No 216
>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair]
Probab=34.83 E-value=41 Score=31.77 Aligned_cols=34 Identities=24% Similarity=0.602 Sum_probs=26.9
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCC-HHHHHH
Q 015700 172 LEATVQQILDMGGGSWDRETVIRALRAAYNN-PERAVE 208 (402)
Q Consensus 172 ~e~~v~~i~~MG~~~f~reqV~~ALrAafnN-PdRAvE 208 (402)
.+.+|..|+.+| |.+.|+.+|+....-+ |+--++
T Consensus 156 ~~~~v~AL~~LG---y~~~e~~~av~~v~~~~~~~~~~ 190 (201)
T COG0632 156 LEEAVEALVALG---YKEKEIKKAVKKVLKENPDADVE 190 (201)
T ss_pred hhHHHHHHHHcC---CCHHHHHHHHHHHHhcCCCCCHH
Confidence 455699999999 9999999999988765 444333
No 217
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=34.77 E-value=25 Score=26.76 Aligned_cols=19 Identities=26% Similarity=0.796 Sum_probs=13.0
Q ss_pred HHHHHHHHHhCccchHHHH
Q 015700 286 FQALRTMVQANPQILQPML 304 (402)
Q Consensus 286 f~~lRq~vq~nP~lL~~~l 304 (402)
|++|+.+|++||++.+.+|
T Consensus 2 ~~~lt~~I~~~p~l~ekIL 20 (64)
T PF09494_consen 2 FEALTKLIRSDPELYEKIL 20 (64)
T ss_pred HHHHHHHHHcCHHHHHHHH
Confidence 5677788877777665544
No 218
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=34.52 E-value=73 Score=32.13 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=34.6
Q ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015700 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (402)
Q Consensus 170 ~~~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~G 213 (402)
...++.++-|.+-| .+.+++..+++.+-++|.+|++|+..+
T Consensus 172 ~~~~~~~~~L~~~~---~~~~~a~~~~~l~~G~p~~A~~~~~~~ 212 (319)
T PRK08769 172 PPAHEALAWLLAQG---VSERAAQEALDAARGHPGLAAQWLRED 212 (319)
T ss_pred cCHHHHHHHHHHcC---CChHHHHHHHHHcCCCHHHHHHHhcCc
Confidence 33567788888888 999999999999999999999998543
No 219
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.42 E-value=63 Score=31.99 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=28.2
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHh-hCCHHHHHHHH-HcC
Q 015700 177 QQILDMGGGSWDRETVIRALRAA-YNNPERAVEYL-YSG 213 (402)
Q Consensus 177 ~~i~~MG~~~f~reqV~~ALrAa-fnNPdRAvEyL-~~G 213 (402)
+.+|+|| |++.-+++||--- .-+-+-|++|| +.+
T Consensus 5 ~~l~~mg---fps~k~e~al~~~~n~~~e~al~wl~~d~ 40 (290)
T KOG2689|consen 5 QSLEEMG---FPSGKAEKALAVYGNRGIEQALDWLEMDH 40 (290)
T ss_pred HHHHHhc---CchhhhhhHhhhhccccHHHHHHHHHhcc
Confidence 8899999 9999999999764 45678899999 554
No 220
>COG3760 Uncharacterized conserved protein [Function unknown]
Probab=34.39 E-value=61 Score=29.35 Aligned_cols=59 Identities=27% Similarity=0.308 Sum_probs=42.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEE
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~ 73 (402)
.+++|..+++.|-|.|+.. ++-||| +|.+..| .. ||.|.- -++.++-+|+..|++-.+-
T Consensus 47 nLfLkdkK~q~~lv~~~e~-~~vDLk-~ih~~IG-----~~--RlsFg~----~E~l~E~LGv~pG~VT~Fg 105 (164)
T COG3760 47 NLFLKDKKDQFFLVTVDED-AVVDLK-SIHETIG-----AA--RLSFGS----PERLMEYLGVIPGSVTVFG 105 (164)
T ss_pred eeEeecCCCCEEEEEeccc-ceecHH-HHHHHhc-----ee--eeecCC----HHHHHHHhCCCcCceeEee
Confidence 4788998998888888755 567888 6778877 23 777754 3555666788888855443
No 221
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=34.26 E-value=74 Score=36.12 Aligned_cols=64 Identities=13% Similarity=0.280 Sum_probs=47.8
Q ss_pred CCcEEEEEeCC-CCcHHHHHHHHHHHhCCCCCCCCCeEEEe-CCeecCCCCchhhhcc--CCCcEEEEEEe
Q 015700 9 KGTHFEIEVKP-EDKVSDVKKNIETVQGSDVYPASQQMLIH-QGKVLKDVTTLEENKV--AENSFVVVMLT 75 (402)
Q Consensus 9 ~g~~~~ieV~~-~~TV~~LK~kI~~~~g~~~ip~~~QrLIy-~GKiL~D~~tL~dygI--~~gs~I~v~v~ 75 (402)
.|+.++++.+. ..|+.+||..|..++| +....+.|+- +|..+.-++.|..|.- .+.+-|++..+
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~---~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffFnk 70 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVG---HAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFFNK 70 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhc---hhhceeeeeecCCcCcccccchhhhccccCCCCceEEeeh
Confidence 47778888774 5799999999999999 7777887764 5677777888888862 34445665543
No 222
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=33.72 E-value=53 Score=30.56 Aligned_cols=28 Identities=11% Similarity=0.409 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHHhhC
Q 015700 171 NLEATVQQILDMGGGSWDRETVIRALRAAYN 201 (402)
Q Consensus 171 ~~e~~v~~i~~MG~~~f~reqV~~ALrAafn 201 (402)
..++++.-|+.+| |.+.++.+|++....
T Consensus 142 ~~~e~~~AL~~LG---y~~~ea~~av~~~~~ 169 (188)
T PRK14606 142 IYHESLEALVSLG---YPEKQAREAVKHVYR 169 (188)
T ss_pred cHHHHHHHHHHcC---CCHHHHHHHHHHHhh
Confidence 3678999999999 999999999998854
No 223
>PF14551 MCM_N: MCM N-terminal domain; PDB: 2VL6_C 3F9V_A 1LTL_E.
Probab=33.29 E-value=20 Score=29.82 Aligned_cols=54 Identities=31% Similarity=0.495 Sum_probs=41.3
Q ss_pred HHhhCc----HHHHHHHHHHHhCccchHHHHHHHHhhCHHHHHHHHHcHHHHHHHhcC
Q 015700 278 DFLRNS----QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 331 (402)
Q Consensus 278 ~~Lr~~----pqf~~lRq~vq~nP~lL~~~lqqi~~~nP~l~q~I~~n~e~Fl~~l~~ 331 (402)
+||++. .-..+|+++++.+-.-|.-=+..|..-+|+|+..|..||..|+.+|.+
T Consensus 7 ~Fl~~f~~~~~Y~~~l~~~~~~~~~~l~Vd~~dL~~f~~~L~~~l~~~P~~~l~~~~~ 64 (121)
T PF14551_consen 7 EFLREFKEEPKYMDQLREMIQRNKKSLYVDLDDLREFDPDLAEALIENPYRYLPLFEE 64 (121)
T ss_dssp HHCCCH-TS-CCHHHHHHHHHHT-SCEEEEHHHHHHH-HHHHHHHHHCCCCCHHHHHH
T ss_pred HHHHcCCCchHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455552 234688999988888887778888889999999999999988888654
No 224
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=32.73 E-value=86 Score=28.38 Aligned_cols=48 Identities=19% Similarity=0.346 Sum_probs=30.7
Q ss_pred EEEEEeCC-CCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCC
Q 015700 12 HFEIEVKP-EDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAEN 67 (402)
Q Consensus 12 ~~~ieV~~-~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~g 67 (402)
.+.++++. .+.+..+++...+.+. ++.+ |+.|+-++...|+.|| +|.|
T Consensus 76 ri~lele~~~~~ie~I~~iCee~lp---f~y~----i~~G~f~r~~~TvtDY-~KyG 124 (153)
T PF02505_consen 76 RIILELEDEEDVIEKIREICEEVLP---FGYD----IKEGKFIRTKPTVTDY-AKYG 124 (153)
T ss_pred EEEEEecCcHHHHHHHHHHHHHhCC---CceE----eeeeEEeccCCchhhh-hhcC
Confidence 35677777 5566666655544433 2221 4679999999999999 3433
No 225
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=32.21 E-value=80 Score=23.87 Aligned_cols=31 Identities=19% Similarity=0.430 Sum_probs=22.8
Q ss_pred HHHHHHHHhhCHHHHHHHHH--cHHHHHHHhcCC
Q 015700 301 QPMLQELGKQNPHLMRLIQE--HQTDFLRLINEP 332 (402)
Q Consensus 301 ~~~lqqi~~~nP~l~q~I~~--n~e~Fl~~l~~~ 332 (402)
..+|+.+ ++||+|.+.+.+ ++++|+.+..+.
T Consensus 5 ~~Fl~~~-~~d~~L~~~l~~~~~~e~~~~lA~~~ 37 (64)
T TIGR03798 5 KAFLEKV-KTDPDLREKLKAAEDPEDRVAIAKEA 37 (64)
T ss_pred HHHHHHH-HcCHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445544 478999998876 899999988654
No 226
>PHA02564 V virion protein; Provisional
Probab=31.98 E-value=70 Score=28.56 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHc--CCCCCCHHHHHHHHHHhhC
Q 015700 171 NLEATVQQILDM--GGGSWDRETVIRALRAAYN 201 (402)
Q Consensus 171 ~~e~~v~~i~~M--G~~~f~reqV~~ALrAafn 201 (402)
-+...|..|+.| |+.+|..++|++|++.+.+
T Consensus 109 ~l~~l~~Aii~~EnG~~pys~~~i~~~~~~~~~ 141 (141)
T PHA02564 109 TLAALVTAIIRHENGQQPYSAEQIAQGVREVLY 141 (141)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhC
Confidence 466777777654 8899999999999998764
No 227
>PRK01777 hypothetical protein; Validated
Probab=31.54 E-value=2.1e+02 Score=23.69 Aligned_cols=63 Identities=10% Similarity=0.030 Sum_probs=40.0
Q ss_pred CEEEEEeC-C--CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-------CeEEEeCCeecCCCCchhhhccCCCcEE
Q 015700 1 MKVFVKTL-K--GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-------QQMLIHQGKVLKDVTTLEENKVAENSFV 70 (402)
Q Consensus 1 MkI~VKtl-~--g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~-------~QrLIy~GKiL~D~~tL~dygI~~gs~I 70 (402)
|+|.|..- . ...+.+++....||.++-+.. | ++.. .-++.-+||...-+ .-+++||.|
T Consensus 4 i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~s----g---i~~~~pei~~~~~~vgI~Gk~v~~d-----~~L~dGDRV 71 (95)
T PRK01777 4 IRVEVVYALPERQYLQRLTLQEGATVEEAIRAS----G---LLELRTDIDLAKNKVGIYSRPAKLT-----DVLRDGDRV 71 (95)
T ss_pred eEEEEEEECCCceEEEEEEcCCCCcHHHHHHHc----C---CCccCcccccccceEEEeCeECCCC-----CcCCCCCEE
Confidence 45666532 2 234678899999999987664 4 3333 23555567766543 357889999
Q ss_pred EEEEe
Q 015700 71 VVMLT 75 (402)
Q Consensus 71 ~v~v~ 75 (402)
-++-.
T Consensus 72 eIyrP 76 (95)
T PRK01777 72 EIYRP 76 (95)
T ss_pred EEecC
Confidence 98853
No 228
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=31.43 E-value=93 Score=24.70 Aligned_cols=33 Identities=21% Similarity=0.087 Sum_probs=22.2
Q ss_pred EEEEeCCCc-EEEEEeC-CCCcHHHHHHHHHHHhC
Q 015700 3 VFVKTLKGT-HFEIEVK-PEDKVSDVKKNIETVQG 35 (402)
Q Consensus 3 I~VKtl~g~-~~~ieV~-~~~TV~~LK~kI~~~~g 35 (402)
|+.|....+ ...|.++ ...+|.+||..|..+.+
T Consensus 1 V~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~~~ 35 (74)
T PF08783_consen 1 VHYKFKSQKDYDTITFDGTSISVFDLKREIIEKKK 35 (74)
T ss_dssp EEEEETT-SSEEEEEESSSEEEHHHHHHHHHHHHT
T ss_pred CeEEecccCCccEEEECCCeeEHHHHHHHHHHHhC
Confidence 344544443 3456776 46799999999987766
No 229
>PF07939 DUF1685: Protein of unknown function (DUF1685); InterPro: IPR012881 The members of this family are hypothetical eukaryotic proteins of unknown function. The region in question is approximately 100 amino acid residues long.
Probab=31.31 E-value=36 Score=26.26 Aligned_cols=31 Identities=26% Similarity=0.582 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHcCC--ChHH----------HHHHHHHhCC
Q 015700 354 VTPEEREAIERLEAMGF--DRAL----------VLEVFFACNK 384 (402)
Q Consensus 354 ~t~ee~~ai~rL~~lGf--~~~~----------viqay~acdk 384 (402)
||.+|.+-++-..+||| ++.. +++-|+|-+|
T Consensus 1 lTd~dldELkGc~dLGFgF~~~~~~p~L~~tlPaL~lyyavn~ 43 (64)
T PF07939_consen 1 LTDDDLDELKGCIDLGFGFDEEDLDPRLCDTLPALELYYAVNR 43 (64)
T ss_pred CcHhHHHHHhhhhhhccccCccccChHHHhhhHHHHHHHHHHH
Confidence 68899888888889985 4442 4566666443
No 230
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=31.04 E-value=51 Score=30.88 Aligned_cols=28 Identities=11% Similarity=0.214 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCC
Q 015700 172 LEATVQQILDMGGGSWDRETVIRALRAAYNN 202 (402)
Q Consensus 172 ~e~~v~~i~~MG~~~f~reqV~~ALrAafnN 202 (402)
.++.+.-|+.+| |.|.++.+|++....+
T Consensus 149 ~~e~~~aL~~LG---y~~~ea~~ai~~i~~~ 176 (195)
T PRK14604 149 DRELSEILISLG---YSAAEAAAAIAALPSD 176 (195)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHhhc
Confidence 578999999999 9999999999987543
No 231
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=31.02 E-value=93 Score=28.06 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=29.1
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhh
Q 015700 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62 (402)
Q Consensus 13 ~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dy 62 (402)
+.+++...+.+..+++...+.+. ++. -+..||-+.+..|+.||
T Consensus 76 I~le~~~~~~i~~I~eiC~e~~p---F~y----~i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 76 IILELEDEDIVEEIEEICKEMLP---FGY----EVRVGKFLRTKPTVTDY 118 (150)
T ss_pred EEEEecCHHHHHHHHHHHHhhCC---Cce----EeeeeeEeecCCchhhh
Confidence 55666666667777765555433 221 15679999999999998
No 232
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=30.95 E-value=2.3e+02 Score=23.81 Aligned_cols=68 Identities=16% Similarity=0.170 Sum_probs=42.3
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC-CCeEE-EeCC---eecCC-CCc-------hhhhccCCCcE
Q 015700 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA-SQQML-IHQG---KVLKD-VTT-------LEENKVAENSF 69 (402)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~-~~QrL-Iy~G---KiL~D-~~t-------L~dygI~~gs~ 69 (402)
|.|--.++...++.+..+.||.+|-..+..+.. ++. ..-+| ++.| |+|.. ++. |...|.++.|-
T Consensus 5 IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~---l~~~~ny~l~l~~~~l~RvL~p~ErPl~IqkrlL~q~GY~~~D~ 81 (97)
T cd01775 5 IRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFY---LPSGGNYQLSLKKHDLSRVLRPTEKPLLIQKRLLLQVGYEERDR 81 (97)
T ss_pred EEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhc---CCCCCCeEEEEEECCeeeecCCcCCcHHHHHHHHHHcCCCCCCc
Confidence 444445666677999999999999999999987 444 33344 3444 45543 322 44445555555
Q ss_pred EEEE
Q 015700 70 VVVM 73 (402)
Q Consensus 70 I~v~ 73 (402)
|..+
T Consensus 82 l~~l 85 (97)
T cd01775 82 IEDI 85 (97)
T ss_pred HHHh
Confidence 5444
No 233
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=30.70 E-value=72 Score=25.68 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=24.3
Q ss_pred HHHHHhCCCCCCCCCeEEE---eCCeecCCCCchhhhccCCCcEEEEEEec
Q 015700 29 NIETVQGSDVYPASQQMLI---HQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (402)
Q Consensus 29 kI~~~~g~~~ip~~~QrLI---y~GKiL~D~~tL~dygI~~gs~I~v~v~k 76 (402)
.|.+++. +.++.-.|+ .++..|+-+++|.+|||++ ++.+=++
T Consensus 2 ~IC~KCE---fdp~htvLLrD~~s~e~LdLsKSLndlGirE---LYA~D~~ 46 (79)
T PF09469_consen 2 AICEKCE---FDPEHTVLLRDYQSGEELDLSKSLNDLGIRE---LYAWDTS 46 (79)
T ss_dssp HHHHHTT-----TTSEEEES-SS---B--TTS-HHHHT-SE---EEEEE--
T ss_pred ccccccc---cCcceEEEeecCCCCCcccccccHHHhhHHH---HHhhccc
Confidence 4777766 777777776 4677899999999999997 7777655
No 234
>KOG4842 consensus Protein involved in sister chromatid separation and/or segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=30.42 E-value=14 Score=36.22 Aligned_cols=60 Identities=17% Similarity=0.317 Sum_probs=45.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEE
Q 015700 9 KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72 (402)
Q Consensus 9 ~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v 72 (402)
.|..+.++++..++|.|.+..+.+..+ +.+...||++.+ .|++...|.++=.++..+.++
T Consensus 11 ~gn~i~ls~~~~~ri~D~~~~l~K~~~---vss~~~kll~~~-llk~iahl~~p~mkEh~f~vt 70 (278)
T KOG4842|consen 11 SGNAIYLSMAGSQRIPDKNPHLQKVAV---VSSKPNKLLALN-LLKEIAHLVSPLMKEHHFKVT 70 (278)
T ss_pred cCcEEEEEeccccccCCCCcccceeee---eccchHHHHhhh-hhhhhhhhhhhhhccccceeE
Confidence 577899999999999999999999888 888888888877 455555555554555444443
No 235
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=30.30 E-value=1.2e+02 Score=27.64 Aligned_cols=70 Identities=20% Similarity=0.357 Sum_probs=42.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHH-HHH---HHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKK-NIE---TVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~-kI~---~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~ 73 (402)
|.|+++ ++|+.+.++++|..++.++-. .+. .+.|++.-...--.++++|+..+-..++... -+|..|.-+
T Consensus 2 ~~i~lt-vNG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~~g~CGACtVlvDG~~v~SCl~~a~~--~~G~~ItTi 75 (156)
T COG2080 2 MPITLT-VNGEPVELDVDPRTPLLDVLRDELGLTGTKKGCGHGQCGACTVLVDGEAVNSCLTLAVQ--AEGAEITTI 75 (156)
T ss_pred CcEEEE-ECCeEEEEEeCCCChHHHHHHHhcCCCCcCCCCCCccCCceEEEECCeEehHHHHHHHH--hCCCeEEEe
Confidence 456666 789999999999998877543 332 3334332233345677777776655544432 345555433
No 236
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=30.26 E-value=1.7e+02 Score=29.54 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=45.6
Q ss_pred EEEeCCCCcHHHHHHHHHHHhC----CC--------CCCCCCeEEEeCCeecCCCCchhhhc---cCCCcEEEEEEecC
Q 015700 14 EIEVKPEDKVSDVKKNIETVQG----SD--------VYPASQQMLIHQGKVLKDVTTLEENK---VAENSFVVVMLTKS 77 (402)
Q Consensus 14 ~ieV~~~~TV~~LK~kI~~~~g----~~--------~ip~~~QrLIy~GKiL~D~~tL~dyg---I~~gs~I~v~v~k~ 77 (402)
.+....-..|+.|+..|.++.. .. ..+.+...|+++|++|..+.||..+. -|.++-|+|.-|.+
T Consensus 251 rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~k 329 (331)
T PF11816_consen 251 RLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRRK 329 (331)
T ss_pred eecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEec
Confidence 3455556778999999999881 00 03566788999999999999887764 36666677766543
No 237
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=30.14 E-value=31 Score=29.64 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=24.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHH
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNI 30 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI 30 (402)
|+|+|+ .+++.+..++..+.|.++|.+++
T Consensus 1 mkI~i~-i~~~~~~a~L~d~~ta~~~~~~L 29 (120)
T PF04126_consen 1 MKIKIT-IGGQEIEAELNDSPTARAFAAQL 29 (120)
T ss_dssp EEEEEE-ETTEEEEEEEETTHHHHHHHHC-
T ss_pred CeEEEE-ECCEEEEEEECCCHHHHHHHHhC
Confidence 889998 46889999999999998888765
No 238
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=29.72 E-value=63 Score=30.07 Aligned_cols=27 Identities=7% Similarity=0.352 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHHhh
Q 015700 171 NLEATVQQILDMGGGSWDRETVIRALRAAY 200 (402)
Q Consensus 171 ~~e~~v~~i~~MG~~~f~reqV~~ALrAaf 200 (402)
..++.+..|+.+| |.|.++.+|++...
T Consensus 144 ~~~e~~~aL~~LG---y~~~ea~~al~~v~ 170 (186)
T PRK14600 144 INDDALAALISLG---YEKTKAFNAIQKIK 170 (186)
T ss_pred cHHHHHHHHHHcC---CCHHHHHHHHHHhh
Confidence 3578999999999 99999999999874
No 239
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=29.41 E-value=1.5e+02 Score=22.04 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=39.0
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEE
Q 015700 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~ 73 (402)
|+|.+.+|+... +....|+.++=..|....++. -.--..+|+...-+ +-|+++++|.++
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~~~-----~~~A~Vng~~vdl~-----~~L~~~d~v~ii 59 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIHSSLAKR-----AVAAKVNGQLVDLD-----HPLEDGDVVEII 59 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHSHHHHHC-----EEEEEETTEEEETT-----SBB-SSEEEEEE
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHCHHHHhh-----eeEEEEcCEECCCC-----CCcCCCCEEEEE
Confidence 567778888755 677889999999999887621 11224577665543 345667777664
No 240
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=29.08 E-value=1.2e+02 Score=26.38 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=31.0
Q ss_pred ccCCHHHHHHHHHHHH-cCCChHHHHHHHHHhCCCHHHHHHHH
Q 015700 352 VTVTPEEREAIERLEA-MGFDRALVLEVFFACNKNEELAANYL 393 (402)
Q Consensus 352 i~~t~ee~~ai~rL~~-lGf~~~~viqay~acdkneelAan~L 393 (402)
..++++|.+ ...+ -|-+|+.+|.|+.+|+.|.--|.--|
T Consensus 81 ~~i~eeDIk---LV~eQa~VsreeA~kAL~e~~GDlaeAIm~L 120 (122)
T COG1308 81 SDISEEDIK---LVMEQAGVSREEAIKALEEAGGDLAEAIMKL 120 (122)
T ss_pred CCCCHHHHH---HHHHHhCCCHHHHHHHHHHcCCcHHHHHHHh
Confidence 358888854 3333 59999999999999999998887665
No 241
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=28.55 E-value=66 Score=30.15 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHHhh
Q 015700 171 NLEATVQQILDMGGGSWDRETVIRALRAAY 200 (402)
Q Consensus 171 ~~e~~v~~i~~MG~~~f~reqV~~ALrAaf 200 (402)
..++++.-|+.+| |.+.++.+|++...
T Consensus 151 ~~~ea~~AL~~LG---y~~~ea~~al~~i~ 177 (197)
T PRK14603 151 AAEDAVLALLALG---FREAQVRSVVAELL 177 (197)
T ss_pred cHHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 3678999999999 99999999999875
No 242
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=28.41 E-value=1.6e+02 Score=24.94 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=36.2
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC---CCeEEEeCC--------eecCCCCchhhh
Q 015700 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA---SQQMLIHQG--------KVLKDVTTLEEN 62 (402)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~---~~QrLIy~G--------KiL~D~~tL~dy 62 (402)
|+|-.-+|++..|+|..-.+-.++|.++-.++| +.. ..-..+..| +.|.|...+.=|
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg---~~~~~~~~~~~v~d~~~~~~~~~~~LsD~EL~~IC 70 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFG---LPEHPRNYCFYVLDGESPDPSNCRPLSDVELVTIC 70 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHT---SS--CCCEEEEEE-S-----SSEEEE-SSHHHHHH
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcC---CccccccceEEEecccccccccceECcHHHHHHHH
Confidence 566677899999999999999999999999999 443 333445555 445555544444
No 243
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=28.16 E-value=69 Score=29.76 Aligned_cols=26 Identities=19% Similarity=0.548 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 015700 171 NLEATVQQILDMGGGSWDRETVIRALRAA 199 (402)
Q Consensus 171 ~~e~~v~~i~~MG~~~f~reqV~~ALrAa 199 (402)
..++++.-|+.+| |.|.++.+|++..
T Consensus 141 ~~~ea~~AL~~LG---y~~~ea~~a~~~~ 166 (183)
T PRK14601 141 DKSEALAALLTLG---FKQEKIIKVLASC 166 (183)
T ss_pred cHHHHHHHHHHcC---CCHHHHHHHHHhc
Confidence 3578999999999 9999999999976
No 244
>KOG4147 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.02 E-value=1.4e+02 Score=25.56 Aligned_cols=59 Identities=15% Similarity=0.180 Sum_probs=36.7
Q ss_pred EeCC-CCcHHHHHHHHHHHhCCC-CCC------CCCeEEEe----------------C-CeecCC-CCchhhhccCCCcE
Q 015700 16 EVKP-EDKVSDVKKNIETVQGSD-VYP------ASQQMLIH----------------Q-GKVLKD-VTTLEENKVAENSF 69 (402)
Q Consensus 16 eV~~-~~TV~~LK~kI~~~~g~~-~ip------~~~QrLIy----------------~-GKiL~D-~~tL~dygI~~gs~ 69 (402)
+++. +.||.+++..|.++...+ .++ -+..|+++ . ..+|+| +++|..|||.+..-
T Consensus 28 d~dLad~Tvk~f~~~~~~~Iq~~~sl~pfRn~kfDtLKIy~~Ah~sKT~nLvinldhDd~w~L~d~~ktL~~~GIenETE 107 (127)
T KOG4147|consen 28 DVDLADQTVKEFIVFLKQDIQLRTSLPPFRNYKFDTLKIYHQAHKSKTNNLVINLDHDDRWLLKDEDKTLKAAGIENETE 107 (127)
T ss_pred ccchhHhhHHHHHHHHHHhcccCCCCCccccccccceeeehhhhhcccceEEEeccCCcceeecCccchHHHhccCcchh
Confidence 5665 789999888877665321 122 22334432 1 256664 67999999998777
Q ss_pred EEEEE
Q 015700 70 VVVML 74 (402)
Q Consensus 70 I~v~v 74 (402)
|-+..
T Consensus 108 is~F~ 112 (127)
T KOG4147|consen 108 ISFFC 112 (127)
T ss_pred hhhhh
Confidence 66554
No 245
>PF14327 CSTF2_hinge: Hinge domain of cleavage stimulation factor subunit 2; PDB: 4EBA_G.
Probab=27.86 E-value=48 Score=26.69 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=15.6
Q ss_pred HHHHHHHHhCccchHHHHHHHH
Q 015700 287 QALRTMVQANPQILQPMLQELG 308 (402)
Q Consensus 287 ~~lRq~vq~nP~lL~~~lqqi~ 308 (402)
.++|+++++||++.-.++|-+-
T Consensus 47 ~~ar~lL~~nPqLa~Al~qa~l 68 (84)
T PF14327_consen 47 EQARQLLQQNPQLAYALFQALL 68 (84)
T ss_dssp -HHHHHHHS-THHHHHHHHHHH
T ss_pred HHHHHHHHHCcHHHHHHHHHHH
Confidence 5788888888888887777553
No 246
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=27.68 E-value=1.4e+02 Score=25.71 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=30.9
Q ss_pred HHHHHHHHHH--cCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCCC
Q 015700 172 LEATVQQILD--MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215 (402)
Q Consensus 172 ~e~~v~~i~~--MG~~~f~reqV~~ALrAafnNPdRAvEyL~~GIP 215 (402)
+++.+++|.. .+ |.|++|+.+|.+-+ +..++||++|--
T Consensus 31 l~~Ia~~i~~~~s~---~t~~di~~vl~~~~---~~~~~~l~~G~s 70 (124)
T PF14848_consen 31 LEDIAEEIAKEGST---LTRADIEAVLNALK---DEMIEALMNGYS 70 (124)
T ss_pred HHHHHHHHHHhCCC---CCHHHHHHHHHHHH---HHHHHHHhCCCE
Confidence 6777788874 56 99999999998865 578899999943
No 247
>PF06755 DUF1219: Protein of unknown function (DUF1219); InterPro: IPR009610 This family consists of several hypothetical proteins which seem to be specific to the enterobacteria Escherichia coli and Shigella flexneri. Family members are often known as YeeV proteins and are around 125 residues in length. The function of this family is unknown.
Probab=27.55 E-value=60 Score=27.79 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=25.6
Q ss_pred CCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015700 369 GFDRALVLEVFFACNKNEELAANYLLDH 396 (402)
Q Consensus 369 Gf~~~~viqay~acdkneelAan~L~~~ 396 (402)
.|..+.||+.++.|+-..-.|.|||.+.
T Consensus 42 ~f~de~vI~~hidaGIs~~~AVN~LVeK 69 (114)
T PF06755_consen 42 PFSDETVIQEHIDAGISPADAVNFLVEK 69 (114)
T ss_pred ccchHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4889999999999999999999999874
No 248
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=27.46 E-value=1.5e+02 Score=34.37 Aligned_cols=39 Identities=26% Similarity=0.407 Sum_probs=34.2
Q ss_pred CCCchHHhhCcHHHHHHHHHHHhCccchHHHHHHHHhhCH
Q 015700 273 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNP 312 (402)
Q Consensus 273 ~~~~l~~Lr~~pqf~~lRq~vq~nP~lL~~~lqqi~~~nP 312 (402)
|+++..-||-+..|+.||+-++.+| .++-||...--.||
T Consensus 410 G~dp~~~Lr~~~~~~~Lr~~le~~~-~fe~LI~ky~l~N~ 448 (978)
T COG1026 410 GGDPEDSLRFLDYLQNLREKLEKGP-YFEKLIRKYFLDNP 448 (978)
T ss_pred CCChhhhhhhHHHHHHHHHhhhcCh-HHHHHHHHHhhcCC
Confidence 5788999999999999999999999 88888887776666
No 249
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=27.28 E-value=2.9e+02 Score=22.61 Aligned_cols=62 Identities=18% Similarity=0.229 Sum_probs=42.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh-CCCCCC--CC-CeEEEeCC--eecCCCCchhhhccCCCcEEEEEEe
Q 015700 13 FEIEVKPEDKVSDVKKNIETVQ-GSDVYP--AS-QQMLIHQG--KVLKDVTTLEENKVAENSFVVVMLT 75 (402)
Q Consensus 13 ~~ieV~~~~TV~~LK~kI~~~~-g~~~ip--~~-~QrLIy~G--KiL~D~~tL~dygI~~gs~I~v~v~ 75 (402)
.-+.|+..+|+.++-++++... |.- ++ +. ..++-+.| ..|..+.++.+-||+.-+.|-++..
T Consensus 17 ~Lv~VDt~dTmdqVA~k~A~HsVGrR-V~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~~ 84 (85)
T PF06234_consen 17 QLVPVDTEDTMDQVAAKVAHHSVGRR-VAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRFE 84 (85)
T ss_dssp EEEEEETT-BHHHHHHHHHTTTTTTS-S---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHhhhhccee-cCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEEc
Confidence 4578999999999999998553 322 22 22 34666888 8999999999999999999988753
No 250
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=27.22 E-value=77 Score=30.64 Aligned_cols=50 Identities=14% Similarity=0.429 Sum_probs=39.8
Q ss_pred chHHhhCcHHHHHHHHHHHhCccchHHHHHHHHhhCHHHHHHHHHcHHHHHHHhcC
Q 015700 276 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 331 (402)
Q Consensus 276 ~l~~Lr~~pqf~~lRq~vq~nP~lL~~~lqqi~~~nP~l~q~I~~n~e~Fl~~l~~ 331 (402)
.|+.|.+.|.| |+.+..+|. .++..|...+|++..-.||+-.+|+..|..
T Consensus 14 vLQ~L~~~~~~---~~~~l~~P~---~~~~~l~~~~~~f~~~~QqDA~Efl~~lld 63 (279)
T cd02667 14 VMQNLSQTPAL---RELLSETPK---ELFSQVCRKAPQFKGYQQQDSHELLRYLLD 63 (279)
T ss_pred HHHHHhcCHHH---HHHHHHCHH---HHHHHHHHhhHhhcCCchhhHHHHHHHHHH
Confidence 58888888887 566666775 578888888999887788999999988754
No 251
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=27.09 E-value=1.1e+02 Score=30.83 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=30.6
Q ss_pred HHHHHHHHHc-CCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015700 173 EATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (402)
Q Consensus 173 e~~v~~i~~M-G~~~f~reqV~~ALrAafnNPdRAvEyL~~G 213 (402)
+...+-|.+- | .+.+++..++|.|-++|.||++||-.|
T Consensus 170 ~~~~~~L~~~~~---~~~~~a~~~~~la~G~~~~Al~l~~~~ 208 (334)
T PRK07993 170 QYALTWLSREVT---MSQDALLAALRLSAGAPGAALALLQPE 208 (334)
T ss_pred HHHHHHHHHccC---CCHHHHHHHHHHcCCCHHHHHHHhcCc
Confidence 4455556564 7 899999999999999999999998543
No 252
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=26.94 E-value=58 Score=24.85 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=27.9
Q ss_pred cCCHHHHHHHHHHH-HcCCChHHHHHHHHHhCCC
Q 015700 353 TVTPEEREAIERLE-AMGFDRALVLEVFFACNKN 385 (402)
Q Consensus 353 ~~t~ee~~ai~rL~-~lGf~~~~viqay~acdkn 385 (402)
.+|+-|++.|..+. .+||+-+.|+.|+.-|-++
T Consensus 12 ~ls~~e~~~i~~~~~~~~~~~evI~~ai~~a~~~ 45 (73)
T TIGR01446 12 MLSPFEMEDLKYWLDEFGNSPELIKEALKEAVSN 45 (73)
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 58999999998876 4699999999999988543
No 253
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=26.56 E-value=2.1e+02 Score=23.79 Aligned_cols=60 Identities=17% Similarity=0.238 Sum_probs=42.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeE-EEeCCee---------cCCCCchhhhccCCCcEEEE
Q 015700 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQM-LIHQGKV---------LKDVTTLEENKVAENSFVVV 72 (402)
Q Consensus 10 g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~Qr-LIy~GKi---------L~D~~tL~dygI~~gs~I~v 72 (402)
..+++|.|+++.|=.++|..|++.+| +-+.... |+..|+. +..+..-...-+..|..|.+
T Consensus 21 ~nk~vF~V~~~AtK~~IK~AvE~lF~---VkV~kVNTl~~k~k~KR~~~k~~G~~~~~kka~V~l~~G~~i~~ 90 (94)
T COG0089 21 ENKYVFIVDPDATKPEIKAAVEELFG---VKVEKVNTLNTKGKTKRAGVKRIGLRKDYKKAYVTLKEGQSIDF 90 (94)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhC---CeEEEEEEEEeCCcceEEeccccccCcccceeEEEccCCCEEee
Confidence 46799999999999999999999999 7777664 4455541 34444455555566666544
No 254
>PF02961 BAF: Barrier to autointegration factor; InterPro: IPR004122 Barrier-to-autointegration factor (BAF) is an essential protein that is highly conserved in metazoan evolution, and which may act as a DNA-bridging protein []. BAF binds directly to double-stranded DNA, to transcription activators, and to inner nuclear membrane proteins, including lamin A filament proteins that anchor nuclear-pore complexes in place, and nuclear LEM-domain proteins that bind to laminins filaments and chromatin. New findings suggest that BAF has structural roles in nuclear assembly and chromatin organisation, represses gene expression and might interlink chromatin structure, nuclear architecture and gene regulation in metazoans []. BAF can be exploited by retroviruses to act as a host component of pre-integration complexes, which promote the integration of the retroviral DNA into the host chromosome by preventing autointegration of retroviral DNA []. BAF might contribute to the assembly or activity of retroviral pre-integration complexes through direct binding to the retroviral proteins p55 Gag and matrix, as well as to DNA.; GO: 0003677 DNA binding; PDB: 2ODG_A 2BZF_A 2EZX_B 2EZY_B 1QCK_B 1CI4_B 2EZZ_B.
Probab=26.51 E-value=1.1e+02 Score=25.21 Aligned_cols=34 Identities=44% Similarity=0.667 Sum_probs=25.5
Q ss_pred HHHHHHcCCChHHHH-HHHHHhCCCHHHHHHHHhc
Q 015700 362 IERLEAMGFDRALVL-EVFFACNKNEELAANYLLD 395 (402)
Q Consensus 362 i~rL~~lGf~~~~vi-qay~acdkneelAan~L~~ 395 (402)
=.||.+.||++.-++ -=|+-..|||++=.+||-+
T Consensus 32 g~~L~~~GfdKAy~vLGqfLll~kde~~F~~WLk~ 66 (89)
T PF02961_consen 32 GKRLEEKGFDKAYVVLGQFLLLKKDEELFQDWLKD 66 (89)
T ss_dssp HHHHHHTT--BHHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred HHHHHHCCCcHHHHHhhhhhhccCcHHHHHHHHHH
Confidence 469999999986544 6699999999999998865
No 255
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=26.24 E-value=2e+02 Score=22.93 Aligned_cols=38 Identities=13% Similarity=0.291 Sum_probs=29.4
Q ss_pred CcHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCCCchhh
Q 015700 21 DKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVLKDVTTLEE 61 (402)
Q Consensus 21 ~TV~~LK~kI~~~~g~~~ip~~~QrLIy--~GKiL~D~~tL~d 61 (402)
.+..+|+.|...+.+ ++....+|+. .|..++|+.-+..
T Consensus 19 ~sL~eL~~K~~~~l~---l~~~~~~l~L~eDGT~VddEeyF~t 58 (74)
T smart00266 19 SSLEELLSKVCDKLA---LPDSPVTLVLEEDGTIVDDEEYFQT 58 (74)
T ss_pred CCHHHHHHHHHHHhC---CCCCCcEEEEecCCcEEccHHHHhc
Confidence 379999999999999 7766666643 7999988765543
No 256
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.24 E-value=3.9e+02 Score=22.37 Aligned_cols=55 Identities=24% Similarity=0.296 Sum_probs=35.9
Q ss_pred CCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCee------c-CC-CC-ch--hhhccCCCcEEEEEEecC
Q 015700 19 PEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKV------L-KD-VT-TL--EENKVAENSFVVVMLTKS 77 (402)
Q Consensus 19 ~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKi------L-~D-~~-tL--~dygI~~gs~I~v~v~k~ 77 (402)
...||++|-..|..++-+ .-.+-+|..|.+ | +| +- .| ++|.+++||.|+++-+..
T Consensus 34 ~~~tvgdll~yi~~~~ie----~r~~lFi~~gsvrpGii~lINd~DWEllekedy~ledgD~ivfiSTlH 99 (101)
T KOG4146|consen 34 SPATVGDLLDYIFGKYIE----TRDSLFIHHGSVRPGIIVLINDMDWELLEKEDYPLEDGDHIVFISTLH 99 (101)
T ss_pred CcccHHHHHHHHHHHHhc----CCcceEeeCCcCcCcEEEEEeccchhhhcccccCcccCCEEEEEEecc
Confidence 457999999999887642 223355666643 2 33 22 23 689999999998886543
No 257
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=26.15 E-value=57 Score=30.77 Aligned_cols=51 Identities=24% Similarity=0.376 Sum_probs=28.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC---CCeEE--EeCC-----eecCCCC--chhhhc
Q 015700 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA---SQQML--IHQG-----KVLKDVT--TLEENK 63 (402)
Q Consensus 10 g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~---~~QrL--Iy~G-----KiL~D~~--tL~dyg 63 (402)
|-.|.+.|.+.+|..++|++|.++.| ++. ++.|+ +..+ +-|+|+. .|.+..
T Consensus 132 GiPF~f~v~~gE~f~~tK~Rl~~rlg---v~~keF~K~Kfaiv~~~~~~~~~yl~d~~~~il~~~~ 194 (213)
T PF14533_consen 132 GIPFLFVVKPGETFSDTKERLQKRLG---VSDKEFEKWKFAIVQNSRYSKPRYLEDDDDLILFDEI 194 (213)
T ss_dssp EEEEEEEEETT--HHHHHHHHHHHH------HHHHTT-EEEEEETTEE---EE--TT-T----GGG
T ss_pred CCCEEEEeeCCCcHHHHHHHHHHHhC---CChhhheeEEEEEEecCCcccceeccccchhhhhhhh
Confidence 55688999999999999999999999 543 34454 3344 4566654 455443
No 258
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=26.14 E-value=56 Score=22.54 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=16.5
Q ss_pred cchHHHHHHHHhhCHHHHHHHH
Q 015700 298 QILQPMLQELGKQNPHLMRLIQ 319 (402)
Q Consensus 298 ~lL~~~lqqi~~~nP~l~q~I~ 319 (402)
+-|+.+|+.|-+.||++.+-|.
T Consensus 13 ~qL~~lL~~l~~~HPei~~~i~ 34 (38)
T PF14483_consen 13 DQLQSLLQSLCERHPEIQQEIR 34 (38)
T ss_dssp HHHHHHHHHHHHHSTHHHHHHH
T ss_pred HHHHHHHHHHHHhChhHHHHHH
Confidence 3456677788888999887764
No 259
>PRK14109 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Provisional
Probab=25.98 E-value=3.7e+02 Score=31.57 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=31.1
Q ss_pred HHHHhCccchHHHHHHHHhhCHHHHHHHHHcHHHHHHHhcC
Q 015700 291 TMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 331 (402)
Q Consensus 291 q~vq~nP~lL~~~lqqi~~~nP~l~q~I~~n~e~Fl~~l~~ 331 (402)
.++..||.++..++.- -...|-|.+++..+|+-+-.++..
T Consensus 78 ~ll~~~p~~~~~l~~~-~~~S~~la~~l~~~p~~l~~ll~~ 117 (1007)
T PRK14109 78 AALRADPGLRGRLLAV-LGASSALGDHLVAHPEDWRALLRD 117 (1007)
T ss_pred HHHHhCHHHHHHHHHH-HHhCHHHHHHHHHCHHHHHHHhcC
Confidence 5678899988766664 446899999999999877777653
No 260
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=25.84 E-value=84 Score=24.41 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCChHHHHHHH
Q 015700 359 REAIERLEAMGFDRALVLEVF 379 (402)
Q Consensus 359 ~~ai~rL~~lGf~~~~viqay 379 (402)
.+|++.+..|||++..|..+.
T Consensus 12 daA~dam~~lG~~~~~v~~vl 32 (65)
T PF10440_consen 12 DAALDAMRQLGFSKKQVRPVL 32 (65)
T ss_pred HHHHHHHHHcCCCHHHHHHHH
No 261
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=25.82 E-value=1.2e+02 Score=24.73 Aligned_cols=41 Identities=22% Similarity=0.416 Sum_probs=34.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeE-EEeCCeecC
Q 015700 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQM-LIHQGKVLK 54 (402)
Q Consensus 11 ~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~Qr-LIy~GKiL~ 54 (402)
..+++.|+.+.|=.++|+.|+..+| +.+...+ +++.||.-.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~---V~V~~Vnt~~~~gk~kR 62 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYG---VKVKKVNTMNYPGKKKR 62 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHT---SEEEEEEEEEETSEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcC---CCeeEEEEeEeCCCceE
Confidence 5789999999999999999999999 8777764 468887544
No 262
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=25.78 E-value=1.1e+02 Score=34.33 Aligned_cols=61 Identities=18% Similarity=0.271 Sum_probs=46.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--e--CCeec--CCCCchhhhccCCCcEEEEEEecC
Q 015700 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--H--QGKVL--KDVTTLEENKVAENSFVVVMLTKS 77 (402)
Q Consensus 12 ~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLI--y--~GKiL--~D~~tL~dygI~~gs~I~v~v~k~ 77 (402)
-+.+.|+...++..+|+.|+...+ ++.+..||. | +|..+ .++.+|+. .-++++|.+-+.++
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~---V~~~HFKi~R~~~~N~~~~S~~~NetLs~--~~~~~~iTI~LG~~ 944 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLE---VDKDHFKIVRHASDNGSEASFMDNETLSG--AFQSCFITIKLGAP 944 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhC---cChhHeEEEEEecCCcchhhhccchhhhh--hcccceEEEEecCc
Confidence 367899999999999999999999 888888886 2 34444 45667774 45677887766543
No 263
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=25.76 E-value=44 Score=23.36 Aligned_cols=24 Identities=38% Similarity=0.497 Sum_probs=9.8
Q ss_pred ccCCHHHHHHHHHHHHcCCChHHH
Q 015700 352 VTVTPEEREAIERLEAMGFDRALV 375 (402)
Q Consensus 352 i~~t~ee~~ai~rL~~lGf~~~~v 375 (402)
-+||.+|+..|++|.+.|++-...
T Consensus 3 ~~Lt~~eR~~I~~l~~~G~s~~~I 26 (44)
T PF13936_consen 3 KHLTPEERNQIEALLEQGMSIREI 26 (44)
T ss_dssp ---------HHHHHHCS---HHHH
T ss_pred cchhhhHHHHHHHHHHcCCCHHHH
Confidence 368999999999999999876553
No 264
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=25.67 E-value=92 Score=24.36 Aligned_cols=43 Identities=12% Similarity=0.323 Sum_probs=27.5
Q ss_pred CcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhh-ccCCCcEEEEE
Q 015700 21 DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN-KVAENSFVVVM 73 (402)
Q Consensus 21 ~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dy-gI~~gs~I~v~ 73 (402)
.|+.+|++..++++| +. ....+.-.|-. +.|. -|.+|+.++++
T Consensus 26 ~SleeLl~ia~~kfg---~~-~~~v~~~dgae------IdDI~~IRDgD~L~~~ 69 (69)
T PF11834_consen 26 DSLEELLKIASEKFG---FS-ATKVLNEDGAE------IDDIDVIRDGDHLYLV 69 (69)
T ss_pred ccHHHHHHHHHHHhC---CC-ceEEEcCCCCE------EeEEEEEEcCCEEEEC
Confidence 699999999999999 53 22222233333 3333 25788888764
No 265
>PF07223 DUF1421: Protein of unknown function (DUF1421); InterPro: IPR010820 This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function.
Probab=25.39 E-value=46 Score=34.25 Aligned_cols=18 Identities=33% Similarity=0.680 Sum_probs=15.6
Q ss_pred HHHHHHHHcCCChHHHHH
Q 015700 360 EAIERLEAMGFDRALVLE 377 (402)
Q Consensus 360 ~ai~rL~~lGf~~~~viq 377 (402)
+.||++..|||.|+.|.-
T Consensus 323 dvidKv~~MGf~rDqV~a 340 (358)
T PF07223_consen 323 DVIDKVASMGFRRDQVRA 340 (358)
T ss_pred HHHHHHHHcCCcHHHHHH
Confidence 469999999999999853
No 266
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=25.16 E-value=1.7e+02 Score=24.01 Aligned_cols=40 Identities=23% Similarity=0.386 Sum_probs=33.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeE-EEeCCee
Q 015700 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQM-LIHQGKV 52 (402)
Q Consensus 10 g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~Qr-LIy~GKi 52 (402)
...+.+.|+...|=.++|+.|+..++ +.+...+ +++.||.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~---VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFG---VKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcC---CceeEEEEEEeCCce
Confidence 46899999999999999999999999 7777764 4577765
No 267
>COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]
Probab=25.15 E-value=1.2e+02 Score=27.79 Aligned_cols=52 Identities=25% Similarity=0.380 Sum_probs=32.4
Q ss_pred HHHcHHHHHHHhcCCCCCC---CCccccccc--ccCCccccCCHHHHHHHHHHHHcCC
Q 015700 318 IQEHQTDFLRLINEPVEGG---EGNVLGQLA--SAMPQAVTVTPEEREAIERLEAMGF 370 (402)
Q Consensus 318 I~~n~e~Fl~~l~~~~~~~---~g~~~~~~~--~~~~~~i~~t~ee~~ai~rL~~lGf 370 (402)
+=.||++++++..+++.=. -|+ +...+ ......+.|+++|.++.++|.+.|.
T Consensus 82 l~~~p~d~~~lve~gv~I~~iNVG~-m~~~~gk~~i~k~vsl~e~D~~af~~L~~~Gv 138 (159)
T COG3444 82 LFENPQDVLRLVEGGVPIKTINVGG-MAFREGKKQITKAVSLDEKDIAAFKKLKAKGV 138 (159)
T ss_pred EECCHHHHHHHHhcCCCCcEEEEcC-ccCCCCcEEeecceeeCHHHHHHHHHHHhcCc
Confidence 3467788888886654100 011 11111 1122468999999999999999993
No 268
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=24.84 E-value=2.2e+02 Score=27.70 Aligned_cols=24 Identities=8% Similarity=0.331 Sum_probs=19.3
Q ss_pred cEEEEE-eCCCCcHHHHHHHHHHHh
Q 015700 11 THFEIE-VKPEDKVSDVKKNIETVQ 34 (402)
Q Consensus 11 ~~~~ie-V~~~~TV~~LK~kI~~~~ 34 (402)
+.|+|+ +++..||.++-.+|.+..
T Consensus 20 q~y~v~~~~~~~tvLd~L~~Ik~~~ 44 (250)
T PRK07570 20 ETYEVDDISPDMSFLEMLDVLNEQL 44 (250)
T ss_pred EEEEecCCCCCCcHHHHHHHHHHHh
Confidence 457777 778999999999997654
No 269
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=24.64 E-value=1e+02 Score=26.64 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=28.4
Q ss_pred ccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCH
Q 015700 352 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 386 (402)
Q Consensus 352 i~~t~ee~~ai~rL~~lGf~~~~viqay~acdkne 386 (402)
+.||+.|..-|+-|..+|.+|..+.-.-+-.+++|
T Consensus 7 ~~l~E~e~~~ie~L~~lgi~R~vA~tlv~L~~~~E 41 (124)
T COG4738 7 MVLTEKEYEIIELLRILGIPRNVATTLVCLAKGDE 41 (124)
T ss_pred cccchhHHHHHHHHHHcCCCchHHHHHHHHhcCcc
Confidence 45999999999999999999998876555555555
No 270
>PF06006 DUF905: Bacterial protein of unknown function (DUF905); InterPro: IPR009253 This family consists of several short hypothetical proteobacterial proteins of unknown function.; PDB: 2HJJ_A.
Probab=24.46 E-value=56 Score=25.66 Aligned_cols=19 Identities=37% Similarity=0.552 Sum_probs=9.5
Q ss_pred CCCCCHHHHHHHHHHhhCCH
Q 015700 184 GGSWDRETVIRALRAAYNNP 203 (402)
Q Consensus 184 ~~~f~reqV~~ALrAafnNP 203 (402)
-|+|.|+|.+ |..++|.|.
T Consensus 5 ~g~ftr~qA~-aV~a~y~NV 23 (70)
T PF06006_consen 5 EGPFTREQAE-AVAAQYRNV 23 (70)
T ss_dssp -----HHHHH-HHHHH-TTE
T ss_pred CCCccHHHHH-HHHHHhcce
Confidence 3679999984 577777763
No 271
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=23.99 E-value=90 Score=29.40 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCH
Q 015700 359 REAIERLEAMGFDRALVLEVFFACNKNE 386 (402)
Q Consensus 359 ~~ai~rL~~lGf~~~~viqay~acdkne 386 (402)
.++++-|..|||++..+-.|.-.+--++
T Consensus 145 ~ea~~AL~~LGy~~~ea~~al~~v~~~~ 172 (196)
T PRK13901 145 KELEQSIVNMGFDRKLVNSAIKEIMLLD 172 (196)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhcch
Confidence 4789999999999999999887764443
No 272
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=23.50 E-value=1.3e+02 Score=30.19 Aligned_cols=36 Identities=28% Similarity=0.365 Sum_probs=30.1
Q ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015700 174 ATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (402)
Q Consensus 174 ~~v~~i~~M-G~~~f~reqV~~ALrAafnNPdRAvEyL~~ 212 (402)
.+|++|-++ | -.=-+|.+||-.+-.|-|.|||||.-
T Consensus 7 ~~VKeLRe~Tg---AGMmdCKkAL~E~~Gd~EkAie~LR~ 43 (296)
T COG0264 7 ALVKELREKTG---AGMMDCKKALEEANGDIEKAIEWLRE 43 (296)
T ss_pred HHHHHHHHHhC---CcHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 478888886 5 33457999999999999999999975
No 273
>TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589. This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.
Probab=23.50 E-value=66 Score=24.34 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=18.8
Q ss_pred hCccchHHHHHHHHhhCHHHHHH
Q 015700 295 ANPQILQPMLQELGKQNPHLMRL 317 (402)
Q Consensus 295 ~nP~lL~~~lqqi~~~nP~l~q~ 317 (402)
-+|..-..+.++|.++||++++.
T Consensus 31 I~P~~T~~VW~~LekeN~eFF~a 53 (57)
T TIGR01589 31 ISPKFTRFVWYLLEKENADFFRC 53 (57)
T ss_pred CCchhHHHHHHHHHHHHHHHHHH
Confidence 46777778899999999998864
No 274
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=23.34 E-value=2.7e+02 Score=22.66 Aligned_cols=57 Identities=11% Similarity=0.079 Sum_probs=39.6
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC---e--ecCCCCchhhh
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---K--VLKDVTTLEEN 62 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~G---K--iL~D~~tL~dy 62 (402)
+.+|| ..|.+..|.++..-|-..|++||...+. +|....-|.|-. - -|.|+.-|.++
T Consensus 2 ~fKv~-~~g~~RRf~~~~~pt~~~L~~kl~~Lf~---lp~~~~~vtYiDeD~D~ITlssd~eL~d~ 63 (82)
T cd06397 2 QFKSS-FLGDTRRIVFPDIPTWEALASKLENLYN---LPEIKVGVTYIDNDNDEITLSSNKELQDF 63 (82)
T ss_pred eEEEE-eCCceEEEecCCCccHHHHHHHHHHHhC---CChhHeEEEEEcCCCCEEEecchHHHHHH
Confidence 34555 4566666777777889999999999999 888777676622 1 24555555555
No 275
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=22.72 E-value=2.4e+02 Score=22.72 Aligned_cols=48 Identities=10% Similarity=0.192 Sum_probs=33.1
Q ss_pred CcHHHHHHHHHHHhCCCCCCCCCeEE--EeCCeecCCCCchhhhccCCCcEEEEE
Q 015700 21 DKVSDVKKNIETVQGSDVYPASQQML--IHQGKVLKDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 21 ~TV~~LK~kI~~~~g~~~ip~~~QrL--Iy~GKiL~D~~tL~dygI~~gs~I~v~ 73 (402)
.+..+|+.|..+..+ ++....+| .-.|.+++|+.-+.. +.++..++++
T Consensus 21 ~sL~EL~~K~~~~l~---~~~~~~~lvL~eDGT~Vd~EeyF~~--LpdnT~lm~L 70 (78)
T cd06539 21 SSLQELISKTLDALV---ITSGLVTLVLEEDGTVVDTEEFFQT--LGDNTHFMVL 70 (78)
T ss_pred cCHHHHHHHHHHHhC---CCCCCcEEEEeCCCCEEccHHHHhh--CCCCCEEEEE
Confidence 379999999999999 76555555 458888888765543 3444444444
No 276
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=22.13 E-value=34 Score=26.16 Aligned_cols=41 Identities=27% Similarity=0.382 Sum_probs=29.8
Q ss_pred cCCHHHHHHHHHHHH-cCCChHHHHHHHHHhCCCHHHHHHHH
Q 015700 353 TVTPEEREAIERLEA-MGFDRALVLEVFFACNKNEELAANYL 393 (402)
Q Consensus 353 ~~t~ee~~ai~rL~~-lGf~~~~viqay~acdkneelAan~L 393 (402)
.+|+-|++.|+.+.+ .||+.+.|+.|+--|-.+-....+|+
T Consensus 12 ~~s~~e~~~l~~~~~~~~~~~~~v~~ai~~~~~~~~~~~~Yi 53 (77)
T PF07261_consen 12 PPSPSEIEKLEKWIDDYGFSPEVVNEAIEYALENNKRSFNYI 53 (77)
T ss_dssp S--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCT--SHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 679999999999887 69999999999988865433335554
No 277
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=22.11 E-value=44 Score=38.71 Aligned_cols=66 Identities=8% Similarity=-0.142 Sum_probs=51.6
Q ss_pred EeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 6 KTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 6 Ktl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
+++....+...+....++...|.+|....| |++..++|++-|..++++..+..|+....-..+..+
T Consensus 330 ~~l~~p~~~~~~~~~~~~~~~~p~~~~qtg---ipi~~~~l~~vg~~~n~d~P~s~~~~e~~~~~p~~~ 395 (1143)
T KOG4248|consen 330 CNLACPPPRHLHVVRPMSHYTTPMVLQQTG---IPIQINVLTTVGMTGNGDRPPSTPNAEAPPPGPGQA 395 (1143)
T ss_pred hcccCCCCceeeecchhhhccCceeeeccc---ccccccceeeecccccCCCCCCccccccCCCCCccc
Confidence 445555566556666778888999999999 999999999999999999999988776655554443
No 278
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=22.11 E-value=98 Score=30.68 Aligned_cols=31 Identities=35% Similarity=0.628 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHH-------------------hhCCHHHHHHHHHcCCCCC
Q 015700 187 WDRETVIRALRA-------------------AYNNPERAVEYLYSGIPEQ 217 (402)
Q Consensus 187 f~reqV~~ALrA-------------------afnNPdRAvEyL~~GIP~~ 217 (402)
++++++...|+. -||+|....+||-.|+|--
T Consensus 215 ~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI 264 (333)
T PRK09814 215 FDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVI 264 (333)
T ss_pred CCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEE
Confidence 478888877775 3899999999999999954
No 279
>PF13974 YebO: YebO-like protein
Probab=21.99 E-value=1.2e+02 Score=24.50 Aligned_cols=34 Identities=35% Similarity=0.490 Sum_probs=21.3
Q ss_pred HHHHHHHhCcc--chHHHHHHHHhhCHHHHHHHHHc
Q 015700 288 ALRTMVQANPQ--ILQPMLQELGKQNPHLMRLIQEH 321 (402)
Q Consensus 288 ~lRq~vq~nP~--lL~~~lqqi~~~nP~l~q~I~~n 321 (402)
-.|--++.|-+ ||+.+|.|-.++|-=|.++..+|
T Consensus 18 VnRaSvRANEQI~LL~~ileqQKrQn~LL~rL~~~~ 53 (80)
T PF13974_consen 18 VNRASVRANEQIELLEEILEQQKRQNALLRRLCEAN 53 (80)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45666777765 67788877777775444444333
No 280
>PF09145 Ubiq-assoc: Ubiquitin-associated; InterPro: IPR015228 Ubiquitin-associated domains contain approximately 40 residues and bind ubiquitin noncovalently. They adopt a secondary structure consisting of three alpha-helices, and have been identified in various modular proteins involved in protein trafficking, clathrin assembly/disassembly, DNA repair, proteasomal degradation, and cell cycle regulation []. ; PDB: 1PGY_A.
Probab=21.67 E-value=1.2e+02 Score=21.84 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=15.2
Q ss_pred HHHHHHcCCChHHHHHHHHHh
Q 015700 362 IERLEAMGFDRALVLEVFFAC 382 (402)
Q Consensus 362 i~rL~~lGf~~~~viqay~ac 382 (402)
|.||+.||.+-+.+..-|---
T Consensus 10 iAkLMSLGLsid~A~~yYe~G 30 (46)
T PF09145_consen 10 IAKLMSLGLSIDKANDYYERG 30 (46)
T ss_dssp HHHHHHH---SHHHHHHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHcC
Confidence 899999999999998887543
No 281
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=21.62 E-value=81 Score=32.69 Aligned_cols=34 Identities=29% Similarity=0.632 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHcC-------------------CChHHHHHHHHHhCCCHHH
Q 015700 355 TPEEREAIERLEAMG-------------------FDRALVLEVFFACNKNEEL 388 (402)
Q Consensus 355 t~ee~~ai~rL~~lG-------------------f~~~~viqay~acdkneel 388 (402)
++.|++.|+||-.|| -.|-+++++++||+-|.|.
T Consensus 316 ~~~d~~vV~~LF~mgnVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNi 368 (452)
T KOG0514|consen 316 QPADRTVVERLFKMGDVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNI 368 (452)
T ss_pred chhhHHHHHHHHhccCcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCcc
Confidence 578899999999998 2478899999999998764
No 282
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=21.33 E-value=2.6e+02 Score=22.43 Aligned_cols=38 Identities=11% Similarity=0.221 Sum_probs=28.8
Q ss_pred CcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecCCCCchhh
Q 015700 21 DKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLKDVTTLEE 61 (402)
Q Consensus 21 ~TV~~LK~kI~~~~g~~~ip~~~QrLI--y~GKiL~D~~tL~d 61 (402)
.+..+|+.|..++.+ ++....+|+ -.|..++|+.-+..
T Consensus 21 ~sL~eL~~K~~~~l~---l~~~~~~lvL~eDGTeVddEeYF~t 60 (78)
T cd01615 21 SSLEELLSKACEKLK---LPSAPVTLVLEEDGTEVDDEEYFQT 60 (78)
T ss_pred CCHHHHHHHHHHHcC---CCCCCeEEEEeCCCcEEccHHHHhc
Confidence 379999999999999 765555554 47888888755443
No 283
>PHA01748 hypothetical protein
Probab=21.28 E-value=1.5e+02 Score=22.33 Aligned_cols=31 Identities=13% Similarity=0.277 Sum_probs=25.9
Q ss_pred cccCCHHHHHHHHHHHH-cCCChHHHHHHHHH
Q 015700 351 AVTVTPEEREAIERLEA-MGFDRALVLEVFFA 381 (402)
Q Consensus 351 ~i~~t~ee~~ai~rL~~-lGf~~~~viqay~a 381 (402)
.|.|+++..+.|++++. .|.+|..+|...+.
T Consensus 6 SvrLp~el~~eld~~a~~~g~~RSE~Ir~Ai~ 37 (60)
T PHA01748 6 TFKIEEDLLELLDRYAIKHGLNRSEAIRKAIE 37 (60)
T ss_pred EEECCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 57899999999999864 69999999987654
No 284
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=21.17 E-value=1.6e+02 Score=27.61 Aligned_cols=38 Identities=11% Similarity=0.175 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015700 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (402)
Q Consensus 171 ~~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~ 212 (402)
+.+++++-+.+.| +++++.++..+.-+.|||. ++.++.
T Consensus 81 e~~el~~iy~~~G---l~~~~a~~i~~~l~~~~~~-~~~m~~ 118 (213)
T PF01988_consen 81 EKEELVEIYRAKG---LSEEDAEEIAEELSKDKDA-LDFMMR 118 (213)
T ss_pred HHHHHHHHHHHCC---CCHHHHHHHHHHHHhCchH-HHHHHh
Confidence 4556778888899 9999999999999999999 999986
No 285
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis]
Probab=21.16 E-value=1.5e+02 Score=30.09 Aligned_cols=39 Identities=15% Similarity=0.270 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHhc
Q 015700 357 EEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLD 395 (402)
Q Consensus 357 ee~~ai~rL~~l-Gf~~~~viqay~acdkneelAan~L~~ 395 (402)
..+++|..|.+- |++-..|.+|+.-|++|-.+|-.||-+
T Consensus 45 ~~~allk~LR~kTgas~~ncKkALee~~gDl~~A~~~L~k 84 (340)
T KOG1071|consen 45 SSKALLKKLREKTGASMVNCKKALEECGGDLVLAEEWLHK 84 (340)
T ss_pred ccHHHHHHHHHHcCCcHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 367788888875 999999999999999999999999965
No 286
>PF09030 Creb_binding: Creb binding; InterPro: IPR014744 This entry represents the interlocking domain of the eukaryotic nuclear receptor coactivators CREBP and p300. The interlocking domain forms a 3-helical non-globular array that forms interlocked heterodimers with its target. Nuclear receptors are ligand-activated transcription factors involved in the regulation of many processes, including development, reproduction and homeostasis. Nuclear receptor coactivators act to modulate the function of nuclear receptors. Coactivators associate with promoters and enhancers primarily through protein-protein contacts to facilitate the interaction between DNA-bound transcription factors and the transcription machinery. Many of these coactivators are structurally related, including CBP (CREB-binding protein) and p300 []. CBP and p300 both have histone acetyltransferase activity (2.3.1.48 from EC). CBP/p300 proteins function synergistically to activate transcription, acting to remodel chromatin and to recruit RNA polymerase II and the basal transcription machinery. CBP is required for proper cell cycle control, differentiation and apoptosis. The interaction of CBP/p300 with transcription factors involves several small domains. The IBiD domain in the C-terminal of CBP is responsible for CBP interaction with IRF-3, as well as with the adenoviral oncoprotein E1A, TIF-2 coactivator, and the IRF homologue KSHV IRF-1 []. ; GO: 0003713 transcription coactivator activity, 0004402 histone acetyltransferase activity, 0006355 regulation of transcription, DNA-dependent, 0016573 histone acetylation, 0000123 histone acetyltransferase complex, 0005634 nucleus; PDB: 2KKJ_A 2C52_A 1JJS_A 2L14_A 1KBH_B 1ZOQ_C.
Probab=21.01 E-value=89 Score=26.45 Aligned_cols=22 Identities=23% Similarity=0.561 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhCccchHHHHHH
Q 015700 285 QFQALRTMVQANPQILQPMLQE 306 (402)
Q Consensus 285 qf~~lRq~vq~nP~lL~~~lqq 306 (402)
|=+++=.|+.+||+|+-.||.+
T Consensus 71 QQQQVLnILkSNPqLMAAFIKQ 92 (104)
T PF09030_consen 71 QQQQVLNILKSNPQLMAAFIKQ 92 (104)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHhhCHHHHHHHHHH
Confidence 3445556666666666666654
No 287
>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.
Probab=20.75 E-value=1.1e+02 Score=22.86 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=21.7
Q ss_pred HHhCccchHHHHHHHHhhCHHHHHHH
Q 015700 293 VQANPQILQPMLQELGKQNPHLMRLI 318 (402)
Q Consensus 293 vq~nP~lL~~~lqqi~~~nP~l~q~I 318 (402)
..-+|..-..+.++|.++||++++..
T Consensus 26 a~I~P~~T~~VW~~Le~eN~eFF~aY 51 (54)
T PF09713_consen 26 ANIEPVFTSTVWQKLEKENPEFFKAY 51 (54)
T ss_pred cCCChHHHHHHHHHHHHHCHHHHHHh
Confidence 34678889999999999999998753
No 288
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=20.67 E-value=1.9e+02 Score=23.80 Aligned_cols=41 Identities=10% Similarity=0.142 Sum_probs=35.4
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeE
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQM 45 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~Qr 45 (402)
.|.|-..+|..+.|+|.-+++..++-+.+..+.| +|.+..+
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~---L~~e~~~ 43 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAG---MDSYTQN 43 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhC---CCHHHHh
Confidence 5677778999999999999999999999999999 7766543
No 289
>KOG4361 consensus BCL2-associated athanogene-like proteins and related BAG family chaperone regulators [Signal transduction mechanisms]
Probab=20.58 E-value=38 Score=34.62 Aligned_cols=60 Identities=22% Similarity=0.283 Sum_probs=44.6
Q ss_pred EEEEeCCCCcHH---HHHHHHHHHhCCCCCCCCCe--EEEeCCeecCCCC-chhhhccCCCcEEEEEEe
Q 015700 13 FEIEVKPEDKVS---DVKKNIETVQGSDVYPASQQ--MLIHQGKVLKDVT-TLEENKVAENSFVVVMLT 75 (402)
Q Consensus 13 ~~ieV~~~~TV~---~LK~kI~~~~g~~~ip~~~Q--rLIy~GKiL~D~~-tL~dygI~~gs~I~v~v~ 75 (402)
+.+.+.+..+-. ++++......| +....+ +++|.++.|+|.. .|..++.++-+.|.|+..
T Consensus 73 ~~~~i~p~~~~g~~~d~a~~~~~~ag---~sh~d~~~k~~y~~~e~rd~~l~l~~~g~p~~sk~~~~~~ 138 (344)
T KOG4361|consen 73 HGLAIVPQYPSGNALDLAKPLTEDAG---LSHYDQEVKLVYVDKELRDQSLRLSSAGVPDASKINVVPD 138 (344)
T ss_pred cccccccccccccchhhhcccccccc---eeecccccccceecccccccccccccccCcccccceeccC
Confidence 344555554444 88887777777 545555 9999999998864 799999999888888754
No 290
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=20.41 E-value=4.3e+02 Score=20.71 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=32.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCC--CCCeEEE--e-CC--eecCCC
Q 015700 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYP--ASQQMLI--H-QG--KVLKDV 56 (402)
Q Consensus 10 g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip--~~~QrLI--y-~G--KiL~D~ 56 (402)
+...+|.|..++|+.+|-..+.++.+ +. +..-.|+ + .| ++|.++
T Consensus 15 ~~~kti~v~~~tTa~~Vi~~~l~k~~---l~~~~~~y~L~e~~~~~~er~L~~~ 65 (90)
T smart00314 15 GTYKTLRVSSRTTARDVIQQLLEKFH---LTDDPEEYVLVEVLPDGKERVLPDD 65 (90)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHhC---CCCCcccEEEEEEeCCcEEEEeCCC
Confidence 55678999999999999999999999 54 3344453 3 45 556653
No 291
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=20.22 E-value=1.2e+02 Score=23.11 Aligned_cols=21 Identities=19% Similarity=0.507 Sum_probs=18.1
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHh
Q 015700 176 VQQILDMGGGSWDRETVIRALRAA 199 (402)
Q Consensus 176 v~~i~~MG~~~f~reqV~~ALrAa 199 (402)
-+.||+|| |...+..+=+|-|
T Consensus 6 k~dLi~lG---f~~~tA~~IIrqA 26 (59)
T PF11372_consen 6 KKDLIELG---FSESTARDIIRQA 26 (59)
T ss_pred HHHHHHcC---CCHHHHHHHHHHH
Confidence 46899999 9999999888865
No 292
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=20.20 E-value=76 Score=23.71 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=21.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHH
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIET 32 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~ 32 (402)
|.|++++.+|+.|.++...-.--.-||..|..
T Consensus 1 ~~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~ 32 (62)
T PF03931_consen 1 MYVKLVSSDGQEFEVSREAAKQSKTIKNMLED 32 (62)
T ss_dssp -EEEEEETTSEEEEEEHHHHTTSHHHHHHHHC
T ss_pred CEEEEEcCCCCEEEeeHHHHHHhHHHHHHHhh
Confidence 78999999999999985533334445555643
No 293
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=20.20 E-value=1.2e+02 Score=28.35 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCC
Q 015700 359 REAIERLEAMGFDRALVLEVFFACNKN 385 (402)
Q Consensus 359 ~~ai~rL~~lGf~~~~viqay~acdkn 385 (402)
.+++.-|..|||++..+.+|+-.++++
T Consensus 149 ~e~~~aL~~LGy~~~~a~~ai~~~~~~ 175 (194)
T PRK14605 149 SDILATLTALGYSSSEAAKAISSLGDN 175 (194)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhcc
No 294
>PF11266 DUF3066: Protein of unknown function (DUF3066); InterPro: IPR022612 This cyanobacterial family of fatty aldehyde decarbonylases acts on mainly C16 and C18 substrates to form hydrocarbons and carbon monoxide []. Note that the corresponding EC number (4.1.99.5 from EC) dating from 1989 refers to a nonorthologous Pisum sativum enzyme that acts on C18 and longer chains and attaches the overly narrow narrow name octadecanal decarbonylase. ; PDB: 2OC5_A.
Probab=20.18 E-value=55 Score=30.66 Aligned_cols=39 Identities=21% Similarity=0.413 Sum_probs=27.7
Q ss_pred cCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHh
Q 015700 353 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 394 (402)
Q Consensus 353 ~~t~ee~~ai~rL~~lGf~~~~viqay~acdkneelAan~L~ 394 (402)
++-|++++-+.||-.| +..=...|.||+||-.+.++.=|
T Consensus 34 ~llP~~~deL~rLakM---E~rH~kgF~aCGrNL~V~~Dm~f 72 (219)
T PF11266_consen 34 ELLPDQKDELIRLAKM---ENRHKKGFQACGRNLGVTPDMPF 72 (219)
T ss_dssp HH-GGGHHHHHHHHHH---HHHHHHHHHHHHHHTT----HHH
T ss_pred HHCcccHHHHHHHHHH---HHHHHhHHHHhccCCcCCCCcHH
Confidence 4567778888899888 77788999999999887776544
Done!