Query 015700
Match_columns 402
No_of_seqs 333 out of 1487
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 17:09:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015700.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015700hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oqy_A HHR23A, UV excision rep 100.0 1.1E-77 3.9E-82 603.4 29.3 354 1-401 8-368 (368)
2 2qsf_X RAD23, UV excision repa 100.0 2.4E-40 8.1E-45 297.7 11.3 127 273-399 21-171 (171)
3 1pve_A HHR23B, UV excision rep 99.8 4.3E-22 1.5E-26 154.3 4.8 62 274-335 3-64 (72)
4 2f4m_B UV excision repair prot 99.8 3.5E-21 1.2E-25 145.0 8.3 59 275-333 2-60 (61)
5 3m62_B UV excision repair prot 99.8 1.5E-19 5.1E-24 151.2 7.9 77 1-80 2-78 (106)
6 1uel_A HHR23B, UV excision rep 99.8 2.3E-18 8E-23 140.8 12.2 78 1-81 1-81 (95)
7 4fbj_B NEDD8; effector-HOST ta 99.8 1.1E-18 3.7E-23 140.9 9.9 80 1-83 1-80 (88)
8 4dwf_A HLA-B-associated transc 99.8 1.2E-18 4E-23 140.5 9.5 75 1-79 6-80 (90)
9 3phx_B Ubiquitin-like protein 99.8 1.7E-18 5.9E-23 136.1 10.0 74 1-77 5-78 (79)
10 2wyq_A HHR23A, UV excision rep 99.7 3.9E-18 1.3E-22 135.6 9.9 76 1-79 6-84 (85)
11 2kk8_A Uncharacterized protein 99.7 3.9E-18 1.3E-22 136.8 9.1 72 1-75 11-83 (84)
12 3v6c_B Ubiquitin; structural g 99.7 4.2E-18 1.5E-22 137.9 9.4 74 1-77 18-91 (91)
13 4a20_A Ubiquitin-like protein 99.7 2.7E-18 9.4E-23 141.9 8.2 74 1-77 20-97 (98)
14 3plu_A Ubiquitin-like modifier 99.7 4.3E-18 1.5E-22 138.8 8.9 71 1-74 22-92 (93)
15 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 8E-18 2.7E-22 137.1 10.6 78 1-81 2-79 (96)
16 2lxa_A Ubiquitin-like protein 99.7 3.1E-18 1.1E-22 138.5 7.3 73 1-76 2-78 (87)
17 1wx7_A Ubiquilin 3; ubiquitin- 99.7 1.5E-17 5.3E-22 138.6 11.6 76 1-80 18-93 (106)
18 4hcn_B Polyubiquitin, ubiquiti 99.7 1.2E-17 4.2E-22 137.3 9.9 75 1-78 23-97 (98)
19 1ndd_A NEDD8, protein (ubiquit 99.7 1.8E-17 6.2E-22 128.3 10.3 75 1-78 1-75 (76)
20 3dbh_I NEDD8; cell cycle, acti 99.7 9.5E-18 3.2E-22 134.1 8.7 75 1-78 13-87 (88)
21 1wy8_A NP95-like ring finger p 99.7 3.3E-17 1.1E-21 131.6 11.4 77 1-80 8-86 (89)
22 1ttn_A DC-UBP, dendritic cell- 99.7 1.4E-17 4.8E-22 139.0 9.3 77 1-80 24-100 (106)
23 2faz_A Ubiquitin-like containi 99.7 1.7E-17 5.9E-22 130.0 9.2 73 1-76 3-77 (78)
24 3a9j_A Ubiquitin; protein comp 99.7 3.4E-17 1.1E-21 126.8 10.7 75 1-78 1-75 (76)
25 1uh6_A Ubiquitin-like 5; beta- 99.7 8.6E-18 2.9E-22 139.2 7.7 71 1-74 29-99 (100)
26 1wgd_A Homocysteine-responsive 99.7 2.8E-17 9.7E-22 133.6 10.4 77 1-80 8-90 (93)
27 2hj8_A Interferon-induced 17 k 99.7 1.9E-17 6.4E-22 133.5 9.2 76 1-79 5-80 (88)
28 3n3k_B Ubiquitin; hydrolase, p 99.7 1.8E-17 6.2E-22 131.5 8.9 76 1-79 4-79 (85)
29 2dzi_A Ubiquitin-like protein 99.7 2.6E-17 8.9E-22 129.4 9.5 73 1-76 8-80 (81)
30 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 4.4E-17 1.5E-21 130.2 10.7 76 1-79 8-83 (87)
31 2uyz_B Small ubiquitin-related 99.7 2.1E-17 7.1E-22 129.9 8.5 75 1-78 4-78 (79)
32 3mtn_B UBA80, ubcep1, ubiquiti 99.7 3.2E-17 1.1E-21 129.9 9.6 76 1-79 4-79 (85)
33 4eew_A Large proline-rich prot 99.7 2.7E-17 9.1E-22 132.0 9.1 71 1-75 18-88 (88)
34 1sif_A Ubiquitin; hydrophobic 99.7 4E-17 1.4E-21 131.6 9.6 75 1-78 10-84 (88)
35 2kan_A Uncharacterized protein 99.7 6E-17 2.1E-21 132.5 10.6 76 1-80 16-92 (94)
36 1v2y_A 3300001G02RIK protein; 99.7 2.3E-17 8E-22 137.9 8.1 77 1-80 8-100 (105)
37 1wia_A Hypothetical ubiquitin- 99.7 5.4E-17 1.8E-21 132.4 10.1 74 1-80 8-82 (95)
38 1dv0_A DNA repair protein HHR2 99.7 3E-18 1E-22 123.0 2.0 47 355-401 1-47 (47)
39 1v5o_A 1700011N24RIK protein; 99.7 7.3E-17 2.5E-21 133.8 10.2 77 1-80 8-89 (102)
40 1wyw_B Ubiquitin-like protein 99.7 4.7E-17 1.6E-21 133.7 8.8 75 1-78 22-96 (97)
41 2bwf_A Ubiquitin-like protein 99.7 1.1E-16 3.7E-21 124.6 9.8 71 1-75 5-75 (77)
42 1wx8_A Riken cDNA 4931431F19; 99.7 4.8E-17 1.6E-21 132.9 8.1 76 1-80 18-93 (96)
43 1wju_A NEDD8 ultimate buster-1 99.7 9.1E-17 3.1E-21 133.0 9.8 73 2-78 17-93 (100)
44 1yx5_B Ubiquitin; proteasome, 99.7 1.4E-16 4.8E-21 130.7 10.7 76 1-79 1-76 (98)
45 3vdz_A Ubiquitin-40S ribosomal 99.7 1E-16 3.5E-21 135.0 9.8 75 1-78 36-110 (111)
46 1yqb_A Ubiquilin 3; structural 99.7 1.2E-16 4.1E-21 132.2 9.3 75 1-79 23-97 (100)
47 1j8c_A Ubiquitin-like protein 99.7 1.5E-16 5E-21 137.0 10.1 76 1-80 33-108 (125)
48 2klc_A Ubiquilin-1; ubiquitin- 99.7 1.6E-16 5.5E-21 131.6 10.0 74 1-78 26-99 (101)
49 3b1l_X E3 ubiquitin-protein li 99.5 4.1E-18 1.4E-22 132.7 0.0 75 1-78 1-75 (76)
50 2l7r_A Ubiquitin-like protein 99.7 2.3E-16 7.9E-21 128.6 9.3 73 1-78 20-92 (93)
51 1wgh_A Ubiquitin-like 3, HCG-1 99.7 3.8E-16 1.3E-20 132.7 10.7 76 1-76 17-99 (116)
52 1ify_A HHR23A, UV excision rep 99.7 8.5E-17 2.9E-21 116.4 5.5 49 165-216 1-49 (49)
53 3l0w_B Monoubiquitinated proli 99.7 5.5E-16 1.9E-20 140.0 11.9 78 1-81 1-78 (169)
54 1x1m_A Ubiquitin-like protein 99.7 4E-16 1.4E-20 130.4 10.1 74 1-77 13-101 (107)
55 1wgg_A Ubiquitin carboxyl-term 99.6 2.6E-16 8.9E-21 129.3 8.3 72 1-77 8-80 (96)
56 2ojr_A Ubiquitin; lanthide-bin 99.6 8.7E-16 3E-20 129.1 10.7 75 1-78 36-110 (111)
57 1wxv_A BAG-family molecular ch 99.6 1.2E-15 3.9E-20 123.7 10.3 73 1-77 8-86 (92)
58 1v5t_A 8430435I17RIK protein; 99.6 9.7E-16 3.3E-20 124.1 9.6 72 1-76 8-83 (90)
59 2kdb_A Homocysteine-responsive 99.6 4E-16 1.4E-20 129.1 7.3 71 1-73 24-99 (99)
60 2kdi_A Ubiquitin, vacuolar pro 99.6 1.3E-15 4.5E-20 128.8 10.6 76 1-79 10-85 (114)
61 3m63_B Ubiquitin domain-contai 99.6 2.2E-16 7.5E-21 130.9 5.6 72 1-76 29-100 (101)
62 2fnj_B Transcription elongatio 99.6 5.5E-16 1.9E-20 131.9 8.1 72 1-75 1-80 (118)
63 2gow_A HCG-1 protein, ubiquiti 99.6 6.9E-16 2.4E-20 132.8 8.6 77 1-77 18-101 (125)
64 3rt3_B Ubiquitin-like protein 99.6 1E-15 3.5E-20 135.7 9.9 76 1-79 82-157 (159)
65 1se9_A Ubiquitin family; ubiqu 99.6 9.4E-16 3.2E-20 131.9 9.2 79 1-79 17-106 (126)
66 4ajy_B Transcription elongatio 99.6 6.6E-16 2.3E-20 131.1 8.1 73 1-76 1-81 (118)
67 1we6_A Splicing factor, putati 99.6 9.8E-16 3.3E-20 128.7 9.0 76 1-79 28-107 (111)
68 1v86_A DNA segment, CHR 7, way 99.6 9.2E-16 3.1E-20 125.6 7.6 71 1-76 18-88 (95)
69 2kd0_A LRR repeats and ubiquit 99.6 2.3E-15 7.9E-20 120.7 9.5 70 3-75 14-83 (85)
70 3u30_A Ubiquitin, linear DI-ub 99.6 2.1E-15 7.3E-20 135.6 10.2 75 1-78 21-95 (172)
71 3q3f_A Ribonuclease/ubiquitin 99.6 1.7E-15 5.8E-20 139.0 9.1 77 1-80 106-182 (189)
72 3rt3_B Ubiquitin-like protein 99.6 2.8E-15 9.5E-20 132.9 10.0 73 1-76 3-77 (159)
73 4dbg_A Ranbp-type and C3HC4-ty 99.6 3.6E-15 1.2E-19 124.4 9.5 72 1-75 25-99 (105)
74 2daf_A FLJ35834 protein; hypot 99.6 5.3E-15 1.8E-19 125.1 9.7 74 2-78 17-91 (118)
75 3u5e_m 60S ribosomal protein L 99.6 1.7E-16 5.7E-21 136.9 0.2 77 1-80 1-77 (128)
76 3b08_A Polyubiquitin-C, ubiqui 99.6 1.2E-14 3.9E-19 127.0 10.7 74 1-77 1-74 (152)
77 1we7_A SF3A1 protein; structur 99.6 1.5E-14 5.1E-19 122.3 10.4 77 1-80 26-112 (115)
78 3b08_A Polyubiquitin-C, ubiqui 99.5 1.5E-14 5.1E-19 126.3 10.2 75 1-78 77-151 (152)
79 3u30_A Ubiquitin, linear DI-ub 99.5 7.9E-15 2.7E-19 131.9 8.4 75 1-78 97-171 (172)
80 3u5c_f 40S ribosomal protein S 99.5 7E-16 2.4E-20 137.0 1.0 77 1-80 1-77 (152)
81 2dzj_A Synaptic glycoprotein S 99.5 8.1E-15 2.8E-19 118.6 6.2 69 1-72 11-85 (88)
82 2dzm_A FAS-associated factor 1 99.5 2.8E-14 9.7E-19 118.1 7.2 71 1-75 9-81 (100)
83 3ai5_A Yeast enhanced green fl 99.5 9.5E-14 3.3E-18 136.1 9.2 74 1-77 234-307 (307)
84 4b6w_A Tubulin-specific chaper 99.4 9.6E-14 3.3E-18 111.8 6.1 73 2-77 4-85 (86)
85 1wf9_A NPL4 family protein; be 99.4 1.7E-13 5.8E-18 114.5 7.5 71 1-75 8-94 (107)
86 2kjr_A CG11242; UBL, ubiquitin 99.4 4.5E-13 1.5E-17 109.9 9.5 70 1-73 16-93 (95)
87 2kj6_A Tubulin folding cofacto 99.4 8.1E-13 2.8E-17 108.8 9.0 71 2-75 16-95 (97)
88 2lbc_A Ubiquitin carboxyl-term 99.4 1.1E-12 3.8E-17 112.8 10.0 41 360-400 80-121 (126)
89 2xzm_9 RPS31E; ribosome, trans 99.4 3.9E-14 1.3E-18 129.7 0.3 72 1-80 1-72 (189)
90 1v6e_A Cytoskeleton-associated 99.4 1E-12 3.4E-17 107.3 8.4 73 1-76 8-88 (95)
91 2kzr_A Ubiquitin thioesterase 99.4 8.9E-13 3.1E-17 105.6 7.1 71 1-75 1-77 (86)
92 2io1_B Small ubiquitin-related 99.3 3.8E-12 1.3E-16 104.1 7.8 76 1-79 8-83 (94)
93 2g3q_A Protein YBL047C; endocy 99.3 3.5E-12 1.2E-16 89.5 5.7 40 172-214 4-43 (43)
94 1t0y_A Tubulin folding cofacto 99.3 7.9E-12 2.7E-16 106.8 9.0 74 1-77 7-88 (122)
95 3shq_A UBLCP1; phosphatase, hy 99.3 2.4E-12 8.3E-17 127.1 6.3 71 1-75 6-79 (320)
96 1vg5_A RSGI RUH-014, rhomboid 99.3 3.7E-12 1.3E-16 99.3 6.0 44 169-215 26-69 (73)
97 1vej_A Riken cDNA 4931431F19; 99.3 6E-12 2.1E-16 98.3 6.9 46 169-217 26-72 (74)
98 1wm3_A Ubiquitin-like protein 99.3 2E-11 6.8E-16 94.7 9.2 71 1-74 2-72 (72)
99 2bwb_A Ubiquitin-like protein 99.3 6E-12 2E-16 89.7 5.5 41 170-213 5-46 (46)
100 2io0_B Small ubiquitin-related 99.2 2.9E-11 9.9E-16 98.3 9.7 75 1-78 6-80 (91)
101 3a4r_A Nfatc2-interacting prot 99.2 6.3E-11 2.1E-15 93.7 10.0 70 1-73 8-78 (79)
102 2knz_A Ubiquilin-4; cytoplasm, 99.2 1.5E-11 5.3E-16 90.1 5.8 43 170-215 9-52 (53)
103 1veg_A NEDD8 ultimate buster-1 99.2 2E-11 6.7E-16 97.3 6.1 44 172-218 29-75 (83)
104 1wz0_A Ubiquitin-like protein 99.2 5.5E-11 1.9E-15 99.0 9.1 76 1-79 25-100 (104)
105 4ae4_A Ubiquitin-associated pr 99.2 1.3E-10 4.6E-15 98.7 11.5 41 357-397 75-115 (118)
106 2d07_B Ubiquitin-like protein 99.2 6.1E-11 2.1E-15 96.7 8.7 74 1-77 18-91 (93)
107 2jy5_A Ubiquilin-1; UBA, alter 99.2 4.1E-11 1.4E-15 87.5 5.9 41 170-213 10-51 (52)
108 2g3q_A Protein YBL047C; endocy 99.1 4.8E-11 1.7E-15 83.6 5.3 38 359-396 5-42 (43)
109 2k8h_A Small ubiquitin protein 99.1 1.2E-10 4.1E-15 97.9 8.1 75 1-78 27-101 (110)
110 1wji_A Tudor domain containing 99.1 6.4E-11 2.2E-15 89.8 5.7 42 172-216 9-50 (63)
111 1wr1_B Ubiquitin-like protein 99.1 6E-11 2.1E-15 88.5 5.3 41 170-213 15-56 (58)
112 2dna_A Unnamed protein product 99.1 8.2E-11 2.8E-15 89.9 5.7 45 170-217 17-62 (67)
113 2eke_C Ubiquitin-like protein 99.1 2.1E-10 7.3E-15 95.7 8.1 73 1-77 32-104 (106)
114 2dak_A Ubiquitin carboxyl-term 99.1 6.6E-11 2.2E-15 89.8 4.0 43 172-217 9-51 (63)
115 1wiv_A UBP14, ubiquitin-specif 99.0 1.7E-10 5.9E-15 90.0 5.4 40 172-214 29-68 (73)
116 1z96_A DNA-damage, UBA-domain 99.0 2.3E-10 8E-15 78.5 5.0 39 170-211 2-40 (40)
117 1wjn_A Tubulin-folding protein 99.0 6.2E-10 2.1E-14 90.9 8.3 72 2-76 11-93 (97)
118 1wji_A Tudor domain containing 99.0 2.2E-10 7.6E-15 86.9 5.1 43 358-400 9-51 (63)
119 2crn_A Ubash3A protein; compac 99.0 1.8E-10 6.2E-15 87.6 3.9 44 171-217 8-52 (64)
120 2dag_A Ubiquitin carboxyl-term 99.0 4.3E-10 1.5E-14 88.0 5.9 43 172-217 9-52 (74)
121 1whc_A RSGI RUH-027, UBA/UBX 3 99.0 2.6E-10 8.8E-15 86.8 4.2 42 173-217 10-52 (64)
122 2ekk_A UBA domain from E3 ubiq 99.0 4.3E-10 1.5E-14 80.3 4.6 38 172-213 9-46 (47)
123 2cpw_A CBL-interacting protein 99.0 3.7E-10 1.3E-14 85.9 4.4 40 173-215 20-60 (64)
124 2dkl_A Trinucleotide repeat co 98.9 1.2E-09 4E-14 87.6 6.2 44 358-401 21-64 (85)
125 2cpw_A CBL-interacting protein 98.9 1.1E-09 3.9E-14 83.2 5.5 42 360-401 21-63 (64)
126 1vg5_A RSGI RUH-014, rhomboid 98.9 9.2E-10 3.2E-14 85.7 4.9 47 352-398 23-69 (73)
127 1z96_A DNA-damage, UBA-domain 98.9 1.4E-09 4.9E-14 74.5 5.1 39 356-394 2-40 (40)
128 2dag_A Ubiquitin carboxyl-term 98.9 1.3E-09 4.3E-14 85.3 5.2 44 358-401 9-53 (74)
129 2dai_A Ubadc1, ubiquitin assoc 98.9 1.3E-09 4.4E-14 87.1 5.0 44 358-401 29-72 (83)
130 1whc_A RSGI RUH-027, UBA/UBX 3 98.9 1.3E-09 4.5E-14 82.9 4.7 42 360-401 11-53 (64)
131 2dai_A Ubadc1, ubiquitin assoc 98.9 2E-09 6.8E-14 86.0 5.6 42 172-216 29-70 (83)
132 1vek_A UBP14, ubiquitin-specif 98.9 1.7E-09 5.8E-14 86.6 5.1 43 172-217 29-72 (84)
133 1wgn_A UBAP1, ubiquitin associ 98.9 2.6E-09 8.8E-14 79.4 5.2 48 351-398 12-59 (63)
134 1ify_A HHR23A, UV excision rep 98.8 2.9E-09 9.8E-14 76.7 5.3 41 356-396 6-46 (49)
135 1wiv_A UBP14, ubiquitin-specif 98.8 2.9E-09 9.8E-14 83.1 5.1 47 354-400 25-71 (73)
136 1wgn_A UBAP1, ubiquitin associ 98.8 3.1E-09 1.1E-13 79.0 4.9 39 172-213 19-57 (63)
137 2ooa_A E3 ubiquitin-protein li 98.8 3.8E-09 1.3E-13 75.9 5.2 37 360-396 13-49 (52)
138 2jy5_A Ubiquilin-1; UBA, alter 98.8 3.9E-09 1.3E-13 77.0 4.9 38 360-397 14-52 (52)
139 2crn_A Ubash3A protein; compac 98.8 4.9E-09 1.7E-13 79.7 5.2 42 360-401 11-53 (64)
140 2lbc_A Ubiquitin carboxyl-term 98.8 4.9E-09 1.7E-13 89.9 5.9 41 172-215 78-118 (126)
141 2dak_A Ubiquitin carboxyl-term 98.8 1.8E-09 6.2E-14 81.8 2.8 43 358-400 9-51 (63)
142 2ekk_A UBA domain from E3 ubiq 98.8 4.5E-09 1.5E-13 75.0 4.1 38 359-397 10-47 (47)
143 2dah_A Ubiquilin-3; UBA domain 98.8 5.7E-09 2E-13 76.7 4.8 41 171-214 8-49 (54)
144 2cwb_A Chimera of immunoglobul 98.8 7.2E-09 2.5E-13 86.4 5.8 42 171-215 65-107 (108)
145 3kyd_D Small ubiquitin-related 98.8 3.2E-08 1.1E-12 83.6 9.6 73 1-76 41-113 (115)
146 1vek_A UBP14, ubiquitin-specif 98.8 6.2E-09 2.1E-13 83.3 4.9 44 358-401 29-73 (84)
147 2d9s_A CBL E3 ubiquitin protei 98.7 8.7E-09 3E-13 74.4 4.7 38 360-397 11-48 (53)
148 2knz_A Ubiquilin-4; cytoplasm, 98.7 1.3E-08 4.5E-13 74.4 5.8 38 360-397 13-51 (53)
149 2dkl_A Trinucleotide repeat co 98.7 1.7E-08 5.8E-13 80.9 5.5 38 173-213 22-59 (85)
150 1veg_A NEDD8 ultimate buster-1 98.7 2.6E-08 8.7E-13 79.3 5.6 42 358-399 29-70 (83)
151 2bwb_A Ubiquitin-like protein 98.6 6.7E-08 2.3E-12 68.6 5.7 37 360-396 9-46 (46)
152 1dv0_A DNA repair protein HHR2 98.6 1.3E-08 4.5E-13 72.6 1.2 42 170-214 2-43 (47)
153 3pge_A SUMO-modified prolifera 98.5 2.6E-07 9E-12 85.1 9.5 76 1-80 30-105 (200)
154 2juj_A E3 ubiquitin-protein li 98.5 1E-07 3.5E-12 69.0 4.9 38 359-396 8-45 (56)
155 2pjh_A Protein NPL4, nuclear p 98.5 7.1E-08 2.4E-12 76.3 4.3 69 1-73 5-78 (80)
156 1vej_A Riken cDNA 4931431F19; 98.5 1.5E-07 5.1E-12 73.4 5.8 41 359-399 30-71 (74)
157 2dah_A Ubiquilin-3; UBA domain 98.5 1.7E-07 5.9E-12 68.7 5.5 41 359-399 10-51 (54)
158 1wr1_B Ubiquitin-like protein 98.5 1.5E-07 5.2E-12 70.0 5.2 38 360-397 19-57 (58)
159 3tix_A Ubiquitin-like protein 98.5 1.9E-07 6.3E-12 85.2 6.8 75 1-79 58-132 (207)
160 2ooa_A E3 ubiquitin-protein li 98.4 2.3E-07 7.9E-12 66.7 5.2 38 172-212 11-48 (52)
161 4ae4_A Ubiquitin-associated pr 98.4 2.4E-07 8.2E-12 78.6 5.0 39 172-213 76-114 (118)
162 2oo9_A E3 ubiquitin-protein li 98.4 3.4E-07 1.1E-11 63.9 4.8 38 360-397 6-43 (46)
163 2d9s_A CBL E3 ubiquitin protei 98.4 3.9E-07 1.3E-11 65.8 5.1 38 172-212 9-46 (53)
164 2dna_A Unnamed protein product 98.3 6.2E-07 2.1E-11 68.4 5.7 47 353-399 12-61 (67)
165 2oo9_A E3 ubiquitin-protein li 98.3 9.3E-07 3.2E-11 61.7 5.7 41 169-212 1-41 (46)
166 3goe_A DNA repair protein RAD6 98.3 3.4E-06 1.2E-10 66.0 9.2 70 2-74 11-81 (82)
167 3k9o_A Ubiquitin-conjugating e 98.2 9.4E-07 3.2E-11 81.5 5.4 75 310-396 127-201 (201)
168 2juj_A E3 ubiquitin-protein li 98.2 1.5E-06 5E-11 63.0 4.8 39 171-212 6-44 (56)
169 3v7o_A Minor nucleoprotein VP3 98.2 2.2E-07 7.7E-12 85.7 0.2 75 1-79 22-96 (227)
170 3k9o_A Ubiquitin-conjugating e 98.2 1.4E-06 4.7E-11 80.4 5.3 43 167-212 158-200 (201)
171 2jxx_A Nfatc2-interacting prot 98.2 9.4E-06 3.2E-10 66.5 9.3 70 1-73 26-96 (97)
172 2cwb_A Chimera of immunoglobul 98.1 3.5E-06 1.2E-10 70.2 5.4 40 359-398 67-107 (108)
173 1wj7_A Hypothetical protein (R 98.1 5.7E-06 2E-10 68.2 6.1 44 170-216 37-81 (104)
174 3e46_A Ubiquitin-conjugating e 98.0 6.7E-06 2.3E-10 78.5 5.9 75 310-396 179-253 (253)
175 1wj7_A Hypothetical protein (R 97.9 1.4E-05 4.9E-10 65.8 6.4 42 358-399 39-81 (104)
176 2l76_A Nfatc2-interacting prot 97.9 6.8E-05 2.3E-09 60.9 9.1 72 1-76 22-93 (95)
177 3uf8_A Ubiquitin-like protein 97.8 3.4E-05 1.2E-09 71.4 7.8 73 2-78 23-95 (209)
178 2cp8_A NEXT to BRCA1 gene 1 pr 97.8 2.4E-05 8.2E-10 57.1 4.3 42 169-213 6-48 (54)
179 2cp8_A NEXT to BRCA1 gene 1 pr 97.8 1.8E-05 6.3E-10 57.7 3.7 46 355-400 4-52 (54)
180 4efo_A Serine/threonine-protei 97.7 8.3E-05 2.8E-09 60.4 7.8 69 3-74 15-87 (94)
181 2bps_A YUKD protein; ubiquitin 97.7 4.9E-05 1.7E-09 60.2 6.2 71 2-72 6-80 (81)
182 1oqy_A HHR23A, UV excision rep 97.7 1.5E-05 5.2E-10 79.9 4.0 42 358-399 168-209 (368)
183 2qsf_X RAD23, UV excision repa 97.7 2.6E-05 8.8E-10 70.0 5.0 42 169-213 127-168 (171)
184 2kc2_A Talin-1, F1; FERM, adhe 97.7 6.5E-05 2.2E-09 64.4 7.1 69 2-73 13-120 (128)
185 3ix6_A TS, tsase, thymidylate 97.6 7.9E-06 2.7E-10 81.4 0.0 74 1-78 22-95 (360)
186 2al3_A TUG long isoform; TUG U 97.5 0.00033 1.1E-08 56.3 8.4 74 1-77 10-83 (90)
187 4da1_A Protein phosphatase 1K, 97.4 2.5E-05 8.4E-10 78.6 0.0 74 2-79 32-105 (389)
188 2dzk_A UBX domain-containing p 97.4 0.0017 5.9E-08 53.9 11.0 71 2-75 15-90 (109)
189 3qx1_A FAS-associated factor 1 97.3 0.00082 2.8E-08 53.0 8.3 69 2-74 9-82 (84)
190 2cos_A Serine/threonine protei 97.3 0.00027 9.4E-09 51.1 4.9 42 172-216 9-52 (54)
191 3e46_A Ubiquitin-conjugating e 97.1 0.00053 1.8E-08 65.3 5.7 44 166-212 209-252 (253)
192 1wj4_A KIAA0794 protein; UBX d 96.7 0.0041 1.4E-07 52.8 7.4 69 2-74 45-118 (124)
193 3ihp_A Ubiquitin carboxyl-term 96.7 0.0021 7.1E-08 71.0 7.0 40 360-399 722-761 (854)
194 2cr5_A Reproduction 8; UBX dom 96.4 0.025 8.4E-07 46.8 10.1 69 2-74 25-97 (109)
195 2pwq_A Ubiquitin conjugating e 96.3 0.00066 2.2E-08 63.2 0.2 73 311-396 143-215 (216)
196 1s3s_G P47 protein; AAA ATPase 96.3 0.015 5.2E-07 49.4 8.5 65 2-68 54-121 (127)
197 1wgl_A TOLL-interacting protei 96.0 0.0091 3.1E-07 44.2 4.9 41 360-400 11-53 (59)
198 2daj_A KIAA0977 protein, COBL- 95.7 0.057 2E-06 42.7 8.6 70 2-77 12-84 (91)
199 1wgl_A TOLL-interacting protei 95.3 0.016 5.6E-07 42.8 4.0 39 172-213 9-49 (59)
200 1tte_A Ubiquitin-conjugating e 95.2 0.014 4.9E-07 54.1 4.4 77 310-388 122-199 (215)
201 2pwq_A Ubiquitin conjugating e 95.1 0.0037 1.3E-07 58.1 0.0 41 171-214 176-216 (216)
202 2l32_A Small archaeal modifier 95.1 0.063 2.2E-06 41.3 6.9 60 1-73 1-60 (74)
203 4e71_A Plexin-B2, MM1; transme 94.8 0.16 5.4E-06 42.3 9.1 64 10-74 23-109 (111)
204 2dhy_A CUE domain-containing p 94.5 0.065 2.2E-06 40.6 5.6 44 167-213 13-58 (67)
205 2di0_A Activating signal coint 94.1 0.14 4.8E-06 39.2 6.8 50 167-219 8-60 (71)
206 1otr_A Protein CUE2; protein-p 94.1 0.065 2.2E-06 38.2 4.6 39 172-213 4-44 (49)
207 2r2o_A Plexin-B1; effector dom 93.9 0.2 6.9E-06 43.1 8.0 65 11-76 41-129 (138)
208 1ryj_A Unknown; beta/alpha pro 93.8 0.32 1.1E-05 36.6 8.4 61 1-74 5-65 (70)
209 4fp9_B Mterf domain-containing 93.7 0.45 1.5E-05 46.8 11.5 93 288-397 94-195 (335)
210 3jyu_A Ubiquitin carboxyl-term 93.4 0.41 1.4E-05 44.5 10.0 62 13-77 154-222 (231)
211 4a3p_A Ubiquitin carboxyl-term 93.3 0.33 1.1E-05 44.6 9.1 61 13-76 142-209 (217)
212 3ihp_A Ubiquitin carboxyl-term 93.1 0.071 2.4E-06 58.8 5.1 40 171-213 719-758 (854)
213 2dhy_A CUE domain-containing p 93.0 0.14 4.8E-06 38.8 5.0 38 359-396 19-58 (67)
214 1vjk_A Molybdopterin convertin 93.0 0.55 1.9E-05 37.5 8.9 68 1-73 10-92 (98)
215 2dam_A ETEA protein; KIAA0887, 92.7 0.28 9.6E-06 37.0 6.3 47 351-397 11-59 (67)
216 2dal_A Protein KIAA0794; FAS a 92.2 0.31 1E-05 36.1 5.9 47 351-397 8-55 (62)
217 2cos_A Serine/threonine protei 92.0 0.14 4.7E-06 37.0 3.6 41 358-398 9-50 (54)
218 4e74_A Plexin-A4; RBD, structu 92.0 0.45 1.5E-05 39.9 7.3 65 11-76 27-115 (117)
219 3h6n_A Plexin-D1; structural g 92.0 0.7 2.4E-05 39.2 8.5 65 10-75 16-104 (127)
220 3rpf_C Molybdopterin convertin 91.8 0.44 1.5E-05 36.0 6.6 65 1-73 1-68 (74)
221 2cp9_A EF-TS, EF-TSMT, elongat 91.7 0.28 9.7E-06 36.8 5.2 36 174-212 11-47 (64)
222 1v92_A NSFL1 cofactor P47; 3-h 90.5 0.46 1.6E-05 32.6 5.1 40 358-397 5-45 (46)
223 3ivf_A Talin-1; FERM domain, c 90.3 0.79 2.7E-05 45.1 8.6 72 2-74 5-83 (371)
224 1oey_A P67-PHOX, neutrophil cy 90.2 1.1 3.8E-05 35.2 7.6 68 2-75 7-81 (83)
225 3po0_A Small archaeal modifier 89.2 3 0.0001 32.2 9.6 67 2-73 2-83 (89)
226 3m66_A Mterf3, mterf domain-co 89.1 1.5 5.2E-05 41.0 9.2 41 173-216 6-55 (270)
227 1ip9_A BEM1 protein; ubiquitin 88.9 0.67 2.3E-05 36.6 5.4 65 3-73 13-83 (85)
228 1otr_A Protein CUE2; protein-p 88.3 0.71 2.4E-05 32.7 4.7 40 359-398 5-46 (49)
229 1pve_A HHR23B, UV excision rep 88.2 0.22 7.4E-06 38.3 2.1 40 277-321 19-61 (72)
230 3mva_O Transcription terminati 85.9 1.5 5E-05 42.7 7.2 38 172-212 19-60 (343)
231 2f4m_B UV excision repair prot 85.8 0.34 1.2E-05 36.0 1.9 37 278-319 18-57 (61)
232 1wgk_A Riken cDNA 2900073H19 p 85.7 1.6 5.5E-05 36.1 6.3 71 1-76 12-105 (114)
233 3kuz_A Plexin-C1; structural g 85.0 2.4 8.2E-05 35.8 7.0 61 11-74 39-125 (126)
234 2juo_A GA-binding protein alph 85.0 2.2 7.4E-05 33.6 6.2 61 13-76 5-65 (89)
235 2cp9_A EF-TS, EF-TSMT, elongat 84.0 1.6 5.5E-05 32.6 4.9 36 361-396 12-48 (64)
236 3dwg_C 9.5 kDa culture filtrat 83.9 3.3 0.00011 32.3 7.1 72 1-74 1-88 (93)
237 1ef1_A Moesin; membrane, FERM 83.6 4 0.00014 38.4 8.9 73 1-77 2-80 (294)
238 4dbg_B Ring finger protein 31; 83.5 0.87 3E-05 40.0 3.8 37 172-210 102-138 (162)
239 1tyg_B YJBS; alpha beta barrel 83.4 1.5 5.1E-05 34.6 4.8 57 8-74 25-82 (87)
240 1h4r_A Merlin; FERM, neurofibr 82.6 4.5 0.00015 38.5 8.9 73 1-77 23-100 (314)
241 1p3q_Q VPS9P, vacuolar protein 82.5 0.58 2E-05 33.9 1.9 39 357-395 11-51 (54)
242 2k5p_A THis protein, thiamine- 81.7 1.6 5.3E-05 33.7 4.2 61 1-74 1-64 (78)
243 2qho_B E3 ubiquitin-protein li 81.4 1.7 5.8E-05 30.7 3.8 35 362-396 13-49 (53)
244 3ig3_A Plxna3 protein; plexin 81.4 4.9 0.00017 42.4 9.1 65 11-76 247-335 (627)
245 2kl0_A Putative thiamin biosyn 81.3 1.6 5.5E-05 33.1 4.2 60 1-74 1-60 (73)
246 3hm6_X Plexin-B1; structural g 81.0 4.1 0.00014 43.0 8.4 65 11-76 274-362 (644)
247 2kmm_A Guanosine-3',5'-BIS(dip 81.0 2.9 0.0001 30.8 5.5 63 1-75 1-63 (73)
248 1ufz_A Hypothetical protein BA 81.0 3.1 0.00011 32.6 5.7 45 352-396 24-75 (83)
249 3onh_A Ubiquitin-activating en 80.8 4 0.00014 34.5 6.8 51 20-74 19-78 (127)
250 1f0z_A THis protein; ubiquitin 80.4 2.4 8.2E-05 31.1 4.8 61 1-74 1-61 (66)
251 2k9x_A Tburm1, uncharacterized 80.4 0.52 1.8E-05 38.9 1.1 69 1-74 5-97 (110)
252 2di0_A Activating signal coint 79.7 3.7 0.00013 31.3 5.6 44 354-397 8-54 (71)
253 2qjl_A URM1, ubiquitin-related 79.7 2.7 9.1E-05 33.5 5.2 35 1-35 2-46 (99)
254 1wgr_A Growth factor receptor- 79.5 6.8 0.00023 31.7 7.5 71 3-75 12-92 (100)
255 2llw_A Heat shock protein STI1 78.7 2 7E-05 32.6 4.0 38 280-323 16-53 (71)
256 2l52_A Methanosarcina acetivor 78.6 7.9 0.00027 30.7 7.7 67 1-73 4-93 (99)
257 2i1j_A Moesin; FERM, coiled-co 77.0 6.3 0.00022 41.3 8.5 74 1-78 5-84 (575)
258 1fm0_D Molybdopterin convertin 76.6 13 0.00043 27.9 8.1 57 11-73 17-75 (81)
259 1q02_A Sequestosome 1; helical 76.5 1.5 5.2E-05 31.3 2.4 38 170-210 8-47 (52)
260 3ivf_A Talin-1; FERM domain, c 76.0 8.7 0.0003 37.5 8.8 71 2-74 87-166 (371)
261 1ixs_A Holliday junction DNA h 75.7 3 0.0001 30.8 4.0 29 168-199 13-41 (62)
262 1vd2_A Protein kinase C, IOTA 75.5 8.1 0.00028 30.6 6.8 69 3-74 7-86 (89)
263 2lnm_A Protein TIC 40, chlorop 75.2 2.8 9.6E-05 30.8 3.7 37 278-319 15-51 (62)
264 3qij_A Protein 4.1; cytoskelet 75.0 10 0.00035 36.0 8.7 70 1-73 18-93 (296)
265 2q5w_D Molybdopterin convertin 74.9 4.8 0.00016 30.0 5.2 54 11-73 16-71 (77)
266 1tte_A Ubiquitin-conjugating e 73.9 2.1 7.1E-05 39.4 3.4 23 173-198 170-192 (215)
267 2dzl_A Protein FAM100B; UBA-li 73.1 6.6 0.00023 29.3 5.4 42 357-398 16-58 (66)
268 1y8x_B Ubiquitin-activating en 73.1 2.8 9.7E-05 33.9 3.6 59 12-73 6-82 (98)
269 4dbg_B Ring finger protein 31; 72.1 4.2 0.00015 35.6 4.7 38 357-394 101-139 (162)
270 2ns5_A Partitioning-defective 70.3 33 0.0011 26.9 9.0 72 1-74 3-81 (85)
271 4eut_A Serine/threonine-protei 67.5 19 0.00065 34.7 9.0 51 11-64 322-374 (396)
272 2cu3_A Unknown function protei 65.8 7.5 0.00026 28.2 4.3 56 8-74 4-59 (64)
273 1ufz_A Hypothetical protein BA 65.1 14 0.00048 28.9 5.8 42 172-213 34-75 (83)
274 1p3q_Q VPS9P, vacuolar protein 61.3 3.6 0.00012 29.7 1.7 42 170-212 10-51 (54)
275 1q02_A Sequestosome 1; helical 60.8 8.7 0.0003 27.4 3.6 37 358-394 10-48 (52)
276 2kvr_A Ubiquitin carboxyl-term 59.7 7 0.00024 33.0 3.6 33 13-48 58-90 (130)
277 1aip_C EF-TS, elongation facto 58.0 12 0.00042 33.9 5.0 37 173-212 4-41 (196)
278 1wgy_A RAP guanine nucleotide 57.4 36 0.0012 27.6 7.3 69 4-75 13-86 (104)
279 3qa8_A MGC80376 protein; kinas 55.4 13 0.00043 39.9 5.5 51 9-62 320-371 (676)
280 1xb2_B EF-TS, elongation facto 55.4 13 0.00044 35.7 5.0 36 174-212 6-42 (291)
281 1b4u_A LIGA, LIGB, protocatech 55.3 22 0.00076 30.4 5.9 49 300-373 37-90 (139)
282 2g1e_A Hypothetical protein TA 54.0 38 0.0013 25.6 6.8 58 15-73 19-84 (90)
283 3e21_A HFAF1, FAS-associated f 53.7 11 0.00039 25.9 3.2 35 359-393 6-42 (45)
284 2hj1_A Hypothetical protein; s 53.0 20 0.00067 28.7 5.0 59 11-74 26-84 (97)
285 2llv_A Heat shock protein STI1 51.8 7.3 0.00025 29.3 2.1 32 282-318 30-62 (71)
286 1ixs_A Holliday junction DNA h 51.4 18 0.00063 26.4 4.2 26 357-382 16-41 (62)
287 1rws_A Hypothetical protein PF 51.4 5 0.00017 30.4 1.1 48 14-73 24-71 (77)
288 4gdk_A Ubiquitin-like protein 50.9 63 0.0022 25.4 7.6 59 14-75 23-85 (91)
289 2kmc_A Fermitin family homolog 50.6 97 0.0033 25.0 9.3 71 2-75 21-99 (102)
290 1tr8_A Conserved protein (MTH1 50.6 21 0.00073 28.8 4.9 38 353-393 63-101 (102)
291 1tr8_A Conserved protein (MTH1 49.1 20 0.00067 29.1 4.4 35 173-210 66-101 (102)
292 1vdl_A Ubiquitin carboxyl-term 48.7 28 0.00096 26.7 4.9 37 361-397 27-65 (80)
293 3ge3_C Toluene-4-monooxygenase 48.2 65 0.0022 25.1 7.0 61 13-74 17-82 (84)
294 3hvz_A Uncharacterized protein 47.4 42 0.0014 25.5 5.9 63 2-76 7-69 (78)
295 2lnm_A Protein TIC 40, chlorop 46.8 11 0.00039 27.4 2.5 41 277-323 5-45 (62)
296 4fp9_B Mterf domain-containing 46.6 35 0.0012 33.2 6.7 32 351-382 105-137 (335)
297 4g3o_A E3 ubiquitin-protein li 46.2 47 0.0016 24.1 5.6 47 165-213 10-56 (58)
298 3w1s_C Ubiquitin-like protein 45.9 87 0.003 24.6 7.7 57 14-75 26-85 (91)
299 3m66_A Mterf3, mterf domain-co 45.9 46 0.0016 30.6 7.2 25 171-198 40-64 (270)
300 2inc_C TOUB protein; DIIRON, 4 45.3 1.1E+02 0.0036 23.9 7.8 61 13-74 15-81 (83)
301 2ylm_A Ubiquitin carboxyl-term 44.8 58 0.002 33.6 8.3 59 12-73 353-419 (530)
302 2cu1_A Mitogen-activated prote 43.5 90 0.0031 25.2 7.4 45 2-52 8-53 (103)
303 2c7h_A RBBP6, retinoblastoma-b 42.8 58 0.002 25.5 6.1 34 2-35 8-43 (86)
304 2eel_A Cell death activator CI 42.1 1.3E+02 0.0043 23.8 8.5 49 21-75 28-78 (91)
305 1zoq_C CREB-binding protein, i 41.8 16 0.00054 25.3 2.3 23 286-308 19-41 (47)
306 1q1o_A Cell division control p 41.7 32 0.0011 27.7 4.5 26 10-35 22-47 (98)
307 1v92_A NSFL1 cofactor P47; 3-h 41.6 57 0.002 21.6 5.3 37 172-211 5-42 (46)
308 3au4_A Myosin-X; protein-prote 41.1 48 0.0016 34.1 7.1 58 1-61 217-280 (555)
309 2llw_A Heat shock protein STI1 40.6 44 0.0015 25.1 4.9 38 277-319 22-59 (71)
310 2dhz_A RAP guanine nucleotide 40.3 73 0.0025 26.5 6.7 66 5-75 14-92 (120)
311 3rui_B Autophagy-related prote 40.0 1E+02 0.0036 25.3 7.7 59 15-76 51-113 (118)
312 2lva_A Ubiquitin carboxyl-term 46.0 6.1 0.00021 33.2 0.0 36 361-396 21-58 (129)
313 2l9b_A MRNA 3'-END-processing 37.5 29 0.00099 28.5 3.7 29 286-318 58-86 (109)
314 3hk0_A Growth factor receptor- 37.4 70 0.0024 29.9 6.9 57 3-62 11-74 (256)
315 2kna_A Baculoviral IAP repeat- 37.1 35 0.0012 27.5 4.2 36 175-213 30-72 (104)
316 3e7l_A Transcriptional regulat 37.0 36 0.0012 24.3 3.9 41 165-215 5-45 (63)
317 4gmv_A RAS-associated and plec 36.9 1.2E+02 0.0039 28.8 8.5 68 3-73 34-112 (281)
318 2zjd_A Microtubule-associated 36.7 86 0.003 26.3 6.7 58 15-75 57-119 (130)
319 1eo6_A GATE-16, golgi-associat 36.7 1.2E+02 0.0041 24.8 7.5 59 15-76 49-111 (117)
320 3h9d_A ATG8, microtubule-assoc 36.5 1.2E+02 0.0043 24.9 7.6 58 15-75 52-113 (119)
321 2r2q_A Gamma-aminobutyric acid 36.3 1.1E+02 0.0036 24.8 7.0 57 15-74 48-108 (110)
322 3m95_A Autophagy related prote 36.0 96 0.0033 25.9 6.8 59 15-76 57-119 (125)
323 3u52_E Phenol hydroxylase comp 34.2 1.3E+02 0.0045 24.9 7.2 61 13-73 40-107 (119)
324 4a6q_A Histone deacetylase com 33.6 1.3E+02 0.0043 25.8 7.3 64 12-77 55-140 (143)
325 2dal_A Protein KIAA0794; FAS a 33.4 68 0.0023 23.2 4.9 39 171-212 14-53 (62)
326 1ltl_A DNA replication initiat 32.5 30 0.001 32.5 3.6 55 277-331 19-75 (279)
327 1wz3_A Autophagy 12B, ATG12B, 31.9 1E+02 0.0035 24.4 6.1 57 14-75 31-90 (96)
328 3e7l_A Transcriptional regulat 30.8 26 0.00087 25.1 2.2 24 370-393 19-42 (63)
329 3pvl_A Myosin VIIA isoform 1; 30.2 92 0.0031 33.0 7.2 46 1-48 264-309 (655)
330 1v8c_A MOAD related protein; r 29.6 1.3E+02 0.0043 26.1 6.9 56 14-73 17-81 (168)
331 2ylm_A Ubiquitin carboxyl-term 29.4 49 0.0017 34.2 4.8 70 3-75 133-217 (530)
332 1umq_A Photosynthetic apparatu 29.0 28 0.00095 26.8 2.2 23 371-393 42-64 (81)
333 3eye_A PTS system N-acetylgala 28.7 57 0.0019 28.6 4.4 21 350-370 123-143 (168)
334 2zc2_A DNAD-like replication p 27.5 64 0.0022 23.9 4.0 30 353-382 17-47 (78)
335 2ztd_A Holliday junction ATP-d 26.8 37 0.0013 30.9 3.0 26 172-200 164-189 (212)
336 3cz6_A DNA-binding protein RAP 26.8 61 0.0021 28.4 4.1 45 170-217 61-112 (168)
337 3q8g_A CRAL-TRIO domain-contai 26.3 89 0.0031 29.7 5.8 44 351-394 32-83 (320)
338 1vsq_C Mannose-specific phosph 26.2 72 0.0025 27.8 4.6 21 350-370 121-141 (165)
339 1pgy_A SWA2P; UBA, ubiquitin, 26.2 71 0.0024 21.9 3.5 31 356-386 4-35 (47)
340 2nvu_B Maltose binding protein 26.0 95 0.0032 33.3 6.5 60 13-73 714-789 (805)
341 3r8s_T 50S ribosomal protein L 25.7 1.2E+02 0.0042 23.8 5.5 41 10-53 27-68 (93)
342 1f2r_I Inhibitor of caspase-ac 25.0 1.2E+02 0.0039 24.5 5.2 48 21-74 37-88 (100)
343 3lxf_A Ferredoxin; iron, iron- 24.9 72 0.0025 25.1 4.1 28 2-29 2-29 (104)
344 2kkc_A Sequestosome-1; P62, PB 24.7 1.5E+02 0.0051 23.8 5.9 54 21-76 42-101 (102)
345 1ble_A Fructose permease; phos 24.0 74 0.0025 27.6 4.3 21 350-370 119-139 (163)
346 1l6x_B Minimized B-domain of p 23.7 1E+02 0.0034 20.0 3.6 26 322-367 6-32 (34)
347 1n62_A Carbon monoxide dehydro 23.6 57 0.002 28.4 3.5 27 2-29 5-31 (166)
348 3hrd_D Nicotinate dehydrogenas 23.1 58 0.002 28.3 3.4 27 1-28 4-30 (160)
349 2v1y_A Phosphatidylinositol-4, 23.0 1E+02 0.0035 25.1 4.6 68 3-73 22-102 (108)
350 1t3q_A Quinoline 2-oxidoreduct 22.9 59 0.002 28.2 3.4 28 1-29 10-37 (168)
351 1cuk_A RUVA protein; DNA repai 22.4 44 0.0015 30.1 2.6 25 172-199 160-184 (203)
352 2ejs_A Autocrine motility fact 22.3 2.1E+02 0.007 20.7 5.6 42 170-213 11-52 (58)
353 2ekf_A Ancient ubiquitous prot 22.2 2E+02 0.0067 21.0 5.6 42 170-213 11-52 (61)
354 1pqs_A Cell division control p 22.2 70 0.0024 24.4 3.3 36 12-50 3-43 (77)
355 3p3v_A PTS system, N-acetylgal 22.1 1E+02 0.0034 26.8 4.8 21 350-370 120-141 (163)
356 2ktr_A Sequestosome-1; autopha 21.6 1.6E+02 0.0054 24.3 5.6 54 21-76 57-116 (117)
357 2vl6_A SSO MCM N-TER, minichro 21.5 28 0.00095 32.4 1.1 47 285-331 30-76 (268)
358 2h5n_A Hypothetical protein PG 21.5 1.7E+02 0.0059 24.0 6.0 39 353-391 34-74 (133)
359 1oai_A Nuclear RNA export fact 21.3 2.1E+02 0.0071 20.5 5.6 45 170-217 5-55 (59)
360 3k6g_A Telomeric repeat-bindin 20.6 1.5E+02 0.005 24.1 5.0 41 356-396 8-52 (111)
361 2ba3_A NIKA; dimer, bacterial 20.6 98 0.0033 20.9 3.5 27 351-377 19-46 (51)
362 1ffv_A CUTS, iron-sulfur prote 20.4 73 0.0025 27.7 3.5 27 2-29 5-31 (163)
363 3tca_A Amyloid beta A4 precurs 20.4 1.7E+02 0.0057 26.6 6.2 55 3-60 37-98 (291)
No 1
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=100.00 E-value=1.1e-77 Score=603.40 Aligned_cols=354 Identities=36% Similarity=0.621 Sum_probs=247.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~~ 80 (402)
|+|+||+++|++|.|+|++++||.+||++|+.++++..|++++|||||+||+|+|+++|++|||+++++|++|+.|.+..
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~~~ 87 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAG 87 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCCSS
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCCCC
Confidence 89999999999999999999999999999999532111999999999999999999999999999999997777776654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 015700 81 SSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG 160 (402)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
+....+++..+.+.+++ .++.+ +.....+++...+... +. + +.+.+.+..+|..+..+.+..+....++
T Consensus 88 ~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~-~~-~---~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 156 (368)
T 1oqy_A 88 QGTSAPPEASPTAAPES---STSFP---PAPTSGMSHPPPAARE-DK-S---PSEESAPTTSPESVSGSVPSSGSSGREE 156 (368)
T ss_dssp SCCCCCSSCCCCCSSSC---CCSCC---CSSSCCCCCCCSSSSC-CC-C---CSCSCCCCSSTTCSCCCSCSCCCSCCCC
T ss_pred CCCCCCcccCCCCCccc---cCCCC---CCCCCCCCCCCccccc-cC-C---ccccCCCCCCCCcccccccccccccccc
Confidence 43211111111111110 00000 0000000000000000 00 0 0000000001111111111111123355
Q ss_pred hhcccccCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCCCCCCCCCccccccCCCCCCCCCCccc
Q 015700 161 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240 (402)
Q Consensus 161 ~a~s~l~~g~~~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~GIP~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (402)
.+.|+||+|++++.+|++||+|| |+|++|++|||++|||||||||||++|||++.+...+ . ..+ . .
T Consensus 157 ~~~s~l~~g~~~~~~i~~l~~MG---f~~~~~~~AL~a~~nn~~~A~e~L~~gip~~~~~~~~----~----~~~--~-~ 222 (368)
T 1oqy_A 157 DAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHG----S----VQE--S-Q 222 (368)
T ss_dssp CCCTTTCCTTTHHHHHHHHHTTT---CCSHHHHHHHHHSCSSTTHHHHTTTTSSTTCSSCCCC----C----CCC--C-C
T ss_pred cccccccCCcchHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCcccccccC----C----ccc--c-c
Confidence 67899999999999999999999 9999999999999999999999999999987432210 0 000 0 0
Q ss_pred cCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCchHHhhCcHHHHHHHHHHHhCccchHHHHHHHHhhCHHHHHHHHH
Q 015700 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQE 320 (402)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~lf~~a~~~~~~~~~~~~l~~Lr~~pqf~~lRq~vq~nP~lL~~~lqqi~~~nP~l~q~I~~ 320 (402)
+ .+. .++++++.++|+|||++|||++||++||+||++|++|||+|+++||+|+++|++
T Consensus 223 ---~---~~~----------------~~~~~~~~~~l~~Lr~~pqf~~lR~~vq~nP~~l~~~lq~l~~~nP~l~~~I~~ 280 (368)
T 1oqy_A 223 ---V---SEQ----------------PATEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISR 280 (368)
T ss_dssp ---S---SCC----------------CCSSCCSCCTTHHHHHSHHHHHHHHSTTTCTTHHHHHHTTTTTTCHHHHHHHHH
T ss_pred ---c---ccc----------------cCccccccchHHHHhcChHHHHHHHHHHhChHHHHHHHHHHHhhCHHHHHHHHH
Confidence 0 000 011223467899999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhcCCCCCC-CCc----cccccc--ccCCccccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHH
Q 015700 321 HQTDFLRLINEPVEGG-EGN----VLGQLA--SAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 393 (402)
Q Consensus 321 n~e~Fl~~l~~~~~~~-~g~----~~~~~~--~~~~~~i~~t~ee~~ai~rL~~lGf~~~~viqay~acdkneelAan~L 393 (402)
||++||+||++++++. .+. +.+... ......|+||+||+++|+||++|||+|++||+||++||||+++|+|||
T Consensus 281 n~~~Fl~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~ee~eaI~rL~~mGF~~~~a~~al~a~~~n~e~A~~~L 360 (368)
T 1oqy_A 281 HQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 360 (368)
T ss_dssp HHHHHHHHHHSCCCCSCSSCCCSSSSCCCSCCCTTCSSCCCCTTTHHHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHHHH
T ss_pred CHHHHHHHHcCcccccccccccccccccccccCCccccccCCCcCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999986421 110 011110 111357899999999999999999999999999999999999999999
Q ss_pred hccCCCCC
Q 015700 394 LDHMHEFE 401 (402)
Q Consensus 394 ~~~~~d~~ 401 (402)
|+|.+|+|
T Consensus 361 ~~~~~d~~ 368 (368)
T 1oqy_A 361 LSQNFDDE 368 (368)
T ss_dssp HHHHCCCC
T ss_pred hhCcCcCC
Confidence 99987764
No 2
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=100.00 E-value=2.4e-40 Score=297.74 Aligned_cols=127 Identities=33% Similarity=0.565 Sum_probs=99.7
Q ss_pred CCCchHHhh-CcHHHHHHHHHHHhCccchHHHHHHHHhhCHHHHHHHHHcHHHHHHHhcCCCCCC------------CCc
Q 015700 273 GAGTLDFLR-NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG------------EGN 339 (402)
Q Consensus 273 ~~~~l~~Lr-~~pqf~~lRq~vq~nP~lL~~~lqqi~~~nP~l~q~I~~n~e~Fl~~l~~~~~~~------------~g~ 339 (402)
++++|++|| ++|||++||++||+||++|++|||+|+++||+|+++|++||++||+||+++..+. +|.
T Consensus 21 ~~~~l~~L~~~~Pqf~qlRq~vqqNPqlL~~lLqqig~~NPqL~qlI~qNqe~Fl~mLnep~~~~~~~m~~~~~~~~~g~ 100 (171)
T 2qsf_X 21 QGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDMVEGE 100 (171)
T ss_dssp -------CCCCHHHHHHHHHHHHTCGGGHHHHHHHHHHHCTTHHHHHHHCHHHHHHHHHHCCC-----------------
T ss_pred ccCCHHHHHhcCHHHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHhCcccchhhhhccccccccccc
Confidence 456799999 9999999999999999999999999999999999999999999999999875431 010
Q ss_pred ------ccccc-----cccCCccccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015700 340 ------VLGQL-----ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 399 (402)
Q Consensus 340 ------~~~~~-----~~~~~~~i~~t~ee~~ai~rL~~lGf~~~~viqay~acdkneelAan~L~~~~~d 399 (402)
..+.. ....+.+|++|+||+++|+||++|||+|++||+||++|||||++|+||||++++|
T Consensus 101 ~~~~~~~~g~~~~~~~~~~~~~~i~~tpee~eaI~rL~~mGF~r~~viqA~~ac~knee~Aan~L~~~~~d 171 (171)
T 2qsf_X 101 DIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSDHAD 171 (171)
T ss_dssp --------------------EECCCCCHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHTTC---
T ss_pred ccccccccccccccCCCCCCcccCCCCccHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhccCC
Confidence 00000 0111247999999999999999999999999999999999999999999998765
No 3
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=99.85 E-value=4.3e-22 Score=154.34 Aligned_cols=62 Identities=44% Similarity=0.880 Sum_probs=58.9
Q ss_pred CCchHHhhCcHHHHHHHHHHHhCccchHHHHHHHHhhCHHHHHHHHHcHHHHHHHhcCCCCC
Q 015700 274 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 335 (402)
Q Consensus 274 ~~~l~~Lr~~pqf~~lRq~vq~nP~lL~~~lqqi~~~nP~l~q~I~~n~e~Fl~~l~~~~~~ 335 (402)
.++|++||++|+|++||++||+||++|++|||+|+++||+|+++|++|||+|++||+++.++
T Consensus 3 ~~~l~~Lr~~Pqf~qlR~~vqqNP~lL~~lLqqL~~~NPqL~q~I~~n~e~Fl~ll~e~~~~ 64 (72)
T 1pve_A 3 HMPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQE 64 (72)
T ss_dssp TCTTGGGTTCTTTTTHHHHHTTCGGGHHHHHHHHHTTCHHHHHHHHTTHHHHHHHHHSCSCC
T ss_pred CchHHHHHcChHHHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHHHHHHcCCccC
Confidence 45789999999999999999999999999999999999999999999999999999998754
No 4
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=99.84 E-value=3.5e-21 Score=144.98 Aligned_cols=59 Identities=46% Similarity=0.935 Sum_probs=56.6
Q ss_pred CchHHhhCcHHHHHHHHHHHhCccchHHHHHHHHhhCHHHHHHHHHcHHHHHHHhcCCC
Q 015700 275 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 333 (402)
Q Consensus 275 ~~l~~Lr~~pqf~~lRq~vq~nP~lL~~~lqqi~~~nP~l~q~I~~n~e~Fl~~l~~~~ 333 (402)
+++++||++|+|++||++||+||++|++|||+|+++||+|+++|++|||+|++||++++
T Consensus 2 ~~l~~Lr~~Pqf~~lR~~vq~NP~~L~~lLqql~~~nP~l~~~I~~n~e~Fl~ll~e~~ 60 (61)
T 2f4m_B 2 HPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 60 (61)
T ss_dssp CGGGGGTTCHHHHHHHHHHHHCGGGHHHHHHHHHHHCHHHHHHHHHSHHHHHHHHTSCC
T ss_pred chHHHHHcChHHHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHHHHHHcccC
Confidence 46899999999999999999999999999999999999999999999999999998874
No 5
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.5e-19 Score=151.19 Aligned_cols=77 Identities=25% Similarity=0.402 Sum_probs=70.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~~ 80 (402)
|+|+||+++|++|.|+|++++||.+||++|+.+.| +++++|||||+||+|+|+++|++|||++|++|+|++++++..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~~ 78 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSIS---CEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST 78 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTT---SCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC----
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999876644
No 6
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=2.3e-18 Score=140.84 Aligned_cols=78 Identities=45% Similarity=0.705 Sum_probs=73.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHH---hCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETV---QGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~---~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~ 77 (402)
|+|+||+++|+.+.++|++++||.+||++|+.. .| +|+++|||+|+||.|+|+++|++|||++|++|+|+++++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDA---FPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTT---CCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCC---CChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 899999999999999999999999999999999 67 999999999999999999999999999999999999876
Q ss_pred CCCC
Q 015700 78 KVSS 81 (402)
Q Consensus 78 k~~~ 81 (402)
+..+
T Consensus 78 ~~~~ 81 (95)
T 1uel_A 78 KAVS 81 (95)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5443
No 7
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.77 E-value=1.1e-18 Score=140.88 Aligned_cols=80 Identities=34% Similarity=0.492 Sum_probs=72.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~~ 80 (402)
|+|+||+++|++|.|+|++++||.+||++|+.+.| +|+++|||+|+||.|+|+.+|++|+|++|++|+|+++.++..
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999988765
Q ss_pred CCC
Q 015700 81 SSG 83 (402)
Q Consensus 81 ~~~ 83 (402)
...
T Consensus 78 ~~~ 80 (88)
T 4fbj_B 78 GLR 80 (88)
T ss_dssp ---
T ss_pred CCC
Confidence 544
No 8
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.77 E-value=1.2e-18 Score=140.54 Aligned_cols=75 Identities=28% Similarity=0.380 Sum_probs=71.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~ 79 (402)
|+|+||+++|+++.|+|++++||.+||++|+.+.| +++++|||||+||.|+|+++|++|+| +|++|||+++.+..
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS---IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 79999999999999999999999999999999999 99999999999999999999999999 89999999986543
No 9
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=136.12 Aligned_cols=74 Identities=24% Similarity=0.320 Sum_probs=71.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~ 77 (402)
|+|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+||.|+|+.+|++|||++|++|+|+++.+
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~ 78 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCB
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcC---CCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999999865
No 10
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.75 E-value=3.9e-18 Score=135.65 Aligned_cols=76 Identities=36% Similarity=0.640 Sum_probs=69.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHH---hCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETV---QGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~---~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~ 77 (402)
|+|+||+++|+.+.++|++++||.+||++|+.+ .| +++++|||+|+||.|+|+++|++|||++|++|+|+++++
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDA---FPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTT---CCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccC---CCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 789999999999999999999999999999998 67 999999999999999999999999999999999999876
Q ss_pred CC
Q 015700 78 KV 79 (402)
Q Consensus 78 k~ 79 (402)
++
T Consensus 83 ~~ 84 (85)
T 2wyq_A 83 KA 84 (85)
T ss_dssp --
T ss_pred CC
Confidence 53
No 11
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.74 E-value=3.9e-18 Score=136.79 Aligned_cols=72 Identities=36% Similarity=0.517 Sum_probs=70.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCee-cCCCCchhhhccCCCcEEEEEEe
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKV-LKDVTTLEENKVAENSFVVVMLT 75 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKi-L~D~~tL~dygI~~gs~I~v~v~ 75 (402)
|+|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+||. |+|+++|++|||++|++|+|+++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQH---IPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 89999999999999999999999999999999999 99999999999999 99999999999999999999875
No 12
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.74 E-value=4.2e-18 Score=137.90 Aligned_cols=74 Identities=39% Similarity=0.646 Sum_probs=71.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~ 77 (402)
|+|+||+++|++|.|+|++++||.+||++|+.+.| +++++|||+|+||.|+|+.+|++|||++|++|+|+++.+
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC---CChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 79999999999999999999999999999999999 999999999999999999999999999999999998754
No 13
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.74 E-value=2.7e-18 Score=141.86 Aligned_cols=74 Identities=27% Similarity=0.459 Sum_probs=69.0
Q ss_pred CEEEEEeCCCcEEEE--EeCCCCcHHHHHHHH-HHHhCCCCCCCCCeEEEeCCeecCCCCchhhhcc-CCCcEEEEEEec
Q 015700 1 MKVFVKTLKGTHFEI--EVKPEDKVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV-AENSFVVVMLTK 76 (402)
Q Consensus 1 MkI~VKtl~g~~~~i--eV~~~~TV~~LK~kI-~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI-~~gs~I~v~v~k 76 (402)
|+|+||+++|++|.+ +|++++||.+||++| +...| +|+++|||||+||+|+|+.+|++|+| ++|++|+||+++
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA---SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSC---SCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcC---CChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 789999999998777 566999999999999 77778 99999999999999999999999999 999999999987
Q ss_pred C
Q 015700 77 S 77 (402)
Q Consensus 77 ~ 77 (402)
+
T Consensus 97 p 97 (98)
T 4a20_A 97 N 97 (98)
T ss_dssp C
T ss_pred C
Confidence 5
No 14
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.74 E-value=4.3e-18 Score=138.80 Aligned_cols=71 Identities=27% Similarity=0.379 Sum_probs=68.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
|+|+||++.|+++.|+|++++||.+||++|+++.| +|+++|||+|+||+|+|+.+|++|+|++|++|+|+-
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~G---ip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIG---TQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhC---CCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 68999999999999999999999999999999999 999999999999999999999999999999999863
No 15
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.74 E-value=8e-18 Score=137.10 Aligned_cols=78 Identities=36% Similarity=0.584 Sum_probs=73.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~~ 80 (402)
|+|+||+++|++|.|+|++++||.+||++|+.++| +|+++|||+|+|+.|+|+.+|++|+|+++++|+|+++.+...
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC---CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999877654
Q ss_pred C
Q 015700 81 S 81 (402)
Q Consensus 81 ~ 81 (402)
.
T Consensus 79 ~ 79 (96)
T 3k9o_B 79 D 79 (96)
T ss_dssp -
T ss_pred c
Confidence 3
No 16
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=3.1e-18 Score=138.53 Aligned_cols=73 Identities=29% Similarity=0.457 Sum_probs=68.8
Q ss_pred CEEEEEeCCCcEEEEEeC--CCCcHHHHHHHH-HHHhCCCCCCCCCeEEEeCCeecCCCCchhhhcc-CCCcEEEEEEec
Q 015700 1 MKVFVKTLKGTHFEIEVK--PEDKVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV-AENSFVVVMLTK 76 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~--~~~TV~~LK~kI-~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI-~~gs~I~v~v~k 76 (402)
|+|+||+++|++|+|+|+ +++||.+||++| +.+.| +|+++|||||+||+|+|+.+|++|+| .+|++|+|++++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA---SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSC---SSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcC---CChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999999988755 999999999999 88889 99999999999999999999999999 699999999875
No 17
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.5e-17 Score=138.59 Aligned_cols=76 Identities=26% Similarity=0.324 Sum_probs=71.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~~ 80 (402)
|+|+||+.+|+ |.|+|++++||.+||++|+.+.| +++++|||+|+||+|+|+++|++|+|+++++|||+++.+..+
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~ 93 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK---AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 93 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHT---CCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCS
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCC
Confidence 78999999886 79999999999999999999999 999999999999999999999999999999999999876543
No 18
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.2e-17 Score=137.31 Aligned_cols=75 Identities=36% Similarity=0.577 Sum_probs=72.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k 78 (402)
|+|+||+++|++|.|+|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+.
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~G 97 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 97 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhC---CChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998764
No 19
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.73 E-value=1.8e-17 Score=128.25 Aligned_cols=75 Identities=36% Similarity=0.550 Sum_probs=71.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k 78 (402)
|+|+||+++|+++.++|++++||.+||++|++..| +|+++|||+|+||.|+|+.+|++|||++|++|+|+++.++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRG 75 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC-
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999988653
No 20
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.72 E-value=9.5e-18 Score=134.11 Aligned_cols=75 Identities=36% Similarity=0.546 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k 78 (402)
|+|+||+++|++|.|+|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~G 87 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRG 87 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998754
No 21
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=3.3e-17 Score=131.64 Aligned_cols=77 Identities=19% Similarity=0.293 Sum_probs=72.7
Q ss_pred CEEEEEeCCC-cEEEE-EeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCC
Q 015700 1 MKVFVKTLKG-THFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (402)
Q Consensus 1 MkI~VKtl~g-~~~~i-eV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k 78 (402)
|+|+||+++| +++.| +|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~g 84 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFD---VRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDS 84 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSC---CCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCC
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHC---cChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCC
Confidence 7999999999 79999 59999999999999999999 9999999999999999999999999999999999998766
Q ss_pred CC
Q 015700 79 VS 80 (402)
Q Consensus 79 ~~ 80 (402)
..
T Consensus 85 G~ 86 (89)
T 1wy8_A 85 GP 86 (89)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 22
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.4e-17 Score=139.00 Aligned_cols=77 Identities=19% Similarity=0.364 Sum_probs=73.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~~ 80 (402)
|+|+||+++|+++.++|++++||.+||.+|+.+.| +++++|||+|+||.|+|+++|++|||++|++|||++++++..
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~~ 100 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEG---VEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQN 100 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTC---CCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHC---cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999999876643
No 23
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.7e-17 Score=129.95 Aligned_cols=73 Identities=22% Similarity=0.349 Sum_probs=70.1
Q ss_pred CEEEEEeCCCcEE-EEE-eCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEec
Q 015700 1 MKVFVKTLKGTHF-EIE-VKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (402)
Q Consensus 1 MkI~VKtl~g~~~-~ie-V~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k 76 (402)
|+|+||+++|+++ .++ |++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~g---ip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFH---VEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 8999999999985 899 9999999999999999999 99999999999999999999999999999999999875
No 24
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.72 E-value=3.4e-17 Score=126.75 Aligned_cols=75 Identities=37% Similarity=0.601 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k 78 (402)
|+|+||+.+|+.+.++|++++||.+||++|++..| +|+++|||+|+||.|+|+.+|++|||++|++|+|+++.++
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRG 75 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998654
No 25
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=8.6e-18 Score=139.16 Aligned_cols=71 Identities=17% Similarity=0.281 Sum_probs=68.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
|+|+||++.|+++.|+|++++||.+||++|+++.| +|+++|||||+||+|+|+.+|++|||+++++|+|+.
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~G---ip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTG---TRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHC---CCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999864
No 26
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.8e-17 Score=133.65 Aligned_cols=77 Identities=19% Similarity=0.214 Sum_probs=71.4
Q ss_pred CEEEEEeCCCc--EEEEEeCCCCcHHHHHHHHHHHh--CCCCCCCCCeEEEeCCeecCCCCchhhh--ccCCCcEEEEEE
Q 015700 1 MKVFVKTLKGT--HFEIEVKPEDKVSDVKKNIETVQ--GSDVYPASQQMLIHQGKVLKDVTTLEEN--KVAENSFVVVML 74 (402)
Q Consensus 1 MkI~VKtl~g~--~~~ieV~~~~TV~~LK~kI~~~~--g~~~ip~~~QrLIy~GKiL~D~~tL~dy--gI~~gs~I~v~v 74 (402)
|+|+||+.+++ .+.|+|++++||.+||++|+.++ + +++++|||||+||+|+|+++|++| +|+++++|||++
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~---i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPER---PRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTC---CCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCC---CChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 79999999988 67788889999999999999998 8 999999999999999999999999 999999999998
Q ss_pred ecCCCC
Q 015700 75 TKSKVS 80 (402)
Q Consensus 75 ~k~k~~ 80 (402)
+.+..+
T Consensus 85 ~~~gg~ 90 (93)
T 1wgd_A 85 NVKSGP 90 (93)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 27
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.71 E-value=1.9e-17 Score=133.47 Aligned_cols=76 Identities=24% Similarity=0.292 Sum_probs=70.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~ 79 (402)
|+|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.+..
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTC---SCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhC---CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999986653
No 28
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=1.8e-17 Score=131.47 Aligned_cols=76 Identities=36% Similarity=0.546 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~ 79 (402)
|+|+||+++|+++.++|++++||.+||++|+++.+ +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+..
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987654
No 29
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=129.39 Aligned_cols=73 Identities=27% Similarity=0.424 Sum_probs=70.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEec
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k 76 (402)
|+|+||+++|+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+.+|++|||++|++|+|+++.
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLN---VPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTC---CCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999864
No 30
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=4.4e-17 Score=130.22 Aligned_cols=76 Identities=29% Similarity=0.446 Sum_probs=72.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~ 79 (402)
|+|+||+++|+++.++|++++||.+||++|+++.+ +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+..
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQG---LPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTC---CCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhC---CChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999987653
No 31
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.71 E-value=2.1e-17 Score=129.92 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=72.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k 78 (402)
|+|+||+++|+++.++|++++||.+||++|+++.| +|+++|||+|+|+.|+|+++|++|+|+++++|+|+++.++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~g---i~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~G 78 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 78 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC---CCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998654
No 32
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=3.2e-17 Score=129.90 Aligned_cols=76 Identities=37% Similarity=0.577 Sum_probs=73.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~ 79 (402)
|+|+||+++|+++.|+|++++||.+||++|+++.+ +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+..
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 79999999999999999999999999999999999 99999999999999999999999999999999999987654
No 33
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.71 E-value=2.7e-17 Score=132.02 Aligned_cols=71 Identities=30% Similarity=0.411 Sum_probs=68.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEe
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~ 75 (402)
|+|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+||.|+|+.+|++||| +|++|||++|
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS---IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 78999999999999999999999999999999999 99999999999999999999999999 8999999875
No 34
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=4e-17 Score=131.60 Aligned_cols=75 Identities=33% Similarity=0.604 Sum_probs=69.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k 78 (402)
|+|+||+++|+++.++|++++||.+||++|+++.| +|+++|||+|+||.|+|+++|++|||+++++|+|+++.++
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~G 84 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 84 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC----
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999988765
No 35
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.70 E-value=6e-17 Score=132.51 Aligned_cols=76 Identities=30% Similarity=0.370 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC-CchhhhccCCCcEEEEEEecCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDV-TTLEENKVAENSFVVVMLTKSKV 79 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~-~tL~dygI~~gs~I~v~v~k~k~ 79 (402)
|+|+||++++ ++.|+|++++||.+||++|+.+.| +|+++|||+|+||+|+|+ ++|++|||+++++|+|+++.+..
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVEN---TPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSS---SCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 6899999888 899999999999999999999999 999999999999999999 99999999999999999987654
Q ss_pred C
Q 015700 80 S 80 (402)
Q Consensus 80 ~ 80 (402)
+
T Consensus 92 ~ 92 (94)
T 2kan_A 92 A 92 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 36
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=2.3e-17 Score=137.86 Aligned_cols=77 Identities=22% Similarity=0.234 Sum_probs=70.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC---------------CCeEEEeCCeecC-CCCchhhhcc
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA---------------SQQMLIHQGKVLK-DVTTLEENKV 64 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~---------------~~QrLIy~GKiL~-D~~tL~dygI 64 (402)
|+|+||+++|++|.|+|++++||.+||++|+++.+ +++ ++|+|||+||+|. |+++|++|||
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~---i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQ---LKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHH---HHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 89999999999999999999999999999999998 766 4679999999996 5699999999
Q ss_pred CCCcEEEEEEecCCCC
Q 015700 65 AENSFVVVMLTKSKVS 80 (402)
Q Consensus 65 ~~gs~I~v~v~k~k~~ 80 (402)
++|++||++++.+...
T Consensus 85 ~~g~~l~lv~~lr~~~ 100 (105)
T 1v2y_A 85 RNRDEVSFIKKLGQKS 100 (105)
T ss_dssp CSSEEEEEEECSCSCC
T ss_pred CCCCEEEEEehhccCC
Confidence 9999999999887653
No 37
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=5.4e-17 Score=132.41 Aligned_cols=74 Identities=28% Similarity=0.320 Sum_probs=68.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC-CchhhhccCCCcEEEEEEecCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDV-TTLEENKVAENSFVVVMLTKSKV 79 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~-~tL~dygI~~gs~I~v~v~k~k~ 79 (402)
|+|+||+++|+.+.++|++++||.+||++|+.+. +++|||||+||.|+|+ ++|++|||++|++|||++++++.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~------~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~~ 81 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ------ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA 81 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST------TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC------cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCCC
Confidence 7899999999999999999999999999998763 7899999999999999 99999999999999999987654
Q ss_pred C
Q 015700 80 S 80 (402)
Q Consensus 80 ~ 80 (402)
.
T Consensus 82 ~ 82 (95)
T 1wia_A 82 A 82 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 38
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=99.70 E-value=3e-18 Score=122.98 Aligned_cols=47 Identities=53% Similarity=0.905 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCCCC
Q 015700 355 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 401 (402)
Q Consensus 355 t~ee~~ai~rL~~lGf~~~~viqay~acdkneelAan~L~~~~~d~~ 401 (402)
|+||.++|+||++|||+|..||+||++|+||+++|+||||+++.|++
T Consensus 1 ~~~e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~d~~ 47 (47)
T 1dv0_A 1 GSQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 47 (47)
T ss_dssp --CCHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSCCCCCC
T ss_pred CcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcCCCC
Confidence 68899999999999999999999999999999999999999987753
No 39
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=7.3e-17 Score=133.75 Aligned_cols=77 Identities=19% Similarity=0.321 Sum_probs=70.5
Q ss_pred CEEEEEeCCC----cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC-CchhhhccCCCcEEEEEEe
Q 015700 1 MKVFVKTLKG----THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDV-TTLEENKVAENSFVVVMLT 75 (402)
Q Consensus 1 MkI~VKtl~g----~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~-~tL~dygI~~gs~I~v~v~ 75 (402)
|+|+||+..+ ++|.|+|++++||.+||++|+.+.| +++++|||+|+||.|+|+ ++|++|+|++|++|+|+.+
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESG---VPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTC---CCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHC---cChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence 7899999754 7999999999999999999999999 999999999999999988 6999999999999999987
Q ss_pred cCCCC
Q 015700 76 KSKVS 80 (402)
Q Consensus 76 k~k~~ 80 (402)
.+..+
T Consensus 85 ~~gg~ 89 (102)
T 1v5o_A 85 DNVGL 89 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 65543
No 40
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.69 E-value=4.7e-17 Score=133.69 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=72.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k 78 (402)
|+|+||+++|+++.|+|.+++||.+||++|+.+.| +|+++|||||+|+.|+|+++|++|+|+++++|+|+++.++
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~g---ip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 96 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998764
No 41
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.68 E-value=1.1e-16 Score=124.62 Aligned_cols=71 Identities=30% Similarity=0.517 Sum_probs=68.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEe
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~ 75 (402)
|+|+||+ +|+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+.+|++|||++|++|+|+.+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhC---CCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 6899999 999999999999999999999999999 9999999999999999999999999999999999864
No 42
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=4.8e-17 Score=132.86 Aligned_cols=76 Identities=26% Similarity=0.320 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~~ 80 (402)
|+|+||+. |+.+.|+|++++||.+||++|+.+.+ +++++|||+|+||.|+|+++|++|+|+++++|||+++.+..+
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g~ 93 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLH---CNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSGP 93 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTC---SCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSCS
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCCC
Confidence 78999998 89999999999999999999999999 999999999999999999999999999999999998876543
No 43
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=9.1e-17 Score=132.98 Aligned_cols=73 Identities=19% Similarity=0.132 Sum_probs=65.4
Q ss_pred EEEEEeCC----CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecC
Q 015700 2 KVFVKTLK----GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (402)
Q Consensus 2 kI~VKtl~----g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~ 77 (402)
.|.|+..+ +++|.|+|++++||.+||++|+++.| +|+++|||||+||+|+|+++|++|+|++|++|+||+ .+
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~g---ip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~-lr 92 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFG---LQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLE-LK 92 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTT---CCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEEC-CC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHC---cCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEE-EC
Confidence 36677666 77899999999999999999999999 999999999999999999999999999999995554 44
Q ss_pred C
Q 015700 78 K 78 (402)
Q Consensus 78 k 78 (402)
.
T Consensus 93 g 93 (100)
T 1wju_A 93 Q 93 (100)
T ss_dssp C
T ss_pred C
Confidence 3
No 44
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.68 E-value=1.4e-16 Score=130.66 Aligned_cols=76 Identities=37% Similarity=0.583 Sum_probs=72.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~ 79 (402)
|+|+||+.+|+++.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.++.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g---i~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG 76 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987643
No 45
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.68 E-value=1e-16 Score=135.00 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=72.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k 78 (402)
|+|+||+++|++|.|+|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC---CChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998764
No 46
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.2e-16 Score=132.19 Aligned_cols=75 Identities=27% Similarity=0.324 Sum_probs=70.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~ 79 (402)
|+|+||+++|+ +.|+|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.+..
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK---AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 78999999886 79999999999999999999999 99999999999999999999999999999999999987653
No 47
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.5e-16 Score=136.96 Aligned_cols=76 Identities=29% Similarity=0.329 Sum_probs=69.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~~ 80 (402)
|+|+||++ |+++.|+|++++||.+||++|+.+.| +++++|||||+||+|+|+++|++|||++|++|+|++++++..
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFK---SQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHC---SCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHC---cCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 78999998 89999999999999999999999999 999999999999999999999999999999999999876543
No 48
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=131.58 Aligned_cols=74 Identities=30% Similarity=0.353 Sum_probs=70.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k 78 (402)
|+|+||+. |+.+.|+|++++||.+||++|+...| +|+++|||+|+||+|+|+++|++|||++|++|+|+++.+.
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFK---SHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHT---CCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 78999998 88999999999999999999999999 9999999999999999999999999999999999987654
No 49
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.49 E-value=4.1e-18 Score=132.70 Aligned_cols=75 Identities=27% Similarity=0.408 Sum_probs=72.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k 78 (402)
|+|+||+.+|+++.++|++++||.+||++|+...| +|+++|+|+|+||.|+|+++|++|||++|++|+|+++.++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQG---VPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998653
No 50
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=2.3e-16 Score=128.60 Aligned_cols=73 Identities=22% Similarity=0.342 Sum_probs=69.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k 78 (402)
|+|+||+ |+++.++|++++||.+||++|+++.| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.++
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~G 92 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEG---IAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLG 92 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHT---CCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhC---cChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 7999997 89999999999999999999999999 9999999999999999999999999999999999988654
No 51
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=3.8e-16 Score=132.70 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=65.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCC---CC--CCCCeEEEeCCeecCCCCchhhhccCCCc--EEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSD---VY--PASQQMLIHQGKVLKDVTTLEENKVAENS--FVVVM 73 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~---~i--p~~~QrLIy~GKiL~D~~tL~dygI~~gs--~I~v~ 73 (402)
|+|+||+++|++++|+|++++||.+||++|+..++++ .+ ++++|||||.||+|+|+.+|++|+|+.++ +|||+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 7899999999999999999999999999999954321 13 69999999999999999999999998775 45555
Q ss_pred Eec
Q 015700 74 LTK 76 (402)
Q Consensus 74 v~k 76 (402)
++.
T Consensus 97 lr~ 99 (116)
T 1wgh_A 97 ARE 99 (116)
T ss_dssp ECS
T ss_pred ccC
Confidence 544
No 52
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.65 E-value=8.5e-17 Score=116.43 Aligned_cols=49 Identities=57% Similarity=1.000 Sum_probs=47.2
Q ss_pred cccCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCCCC
Q 015700 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216 (402)
Q Consensus 165 ~l~~g~~~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~GIP~ 216 (402)
+|++|+.+++.|++|++|| |+|++|++|||+++||++||||||++|||+
T Consensus 1 ~~~~~~~~~~~i~~L~~MG---F~~~~a~~AL~~~~~n~e~A~e~L~~gip~ 49 (49)
T 1ify_A 1 TLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPG 49 (49)
T ss_dssp CCCCSHHHHHHHHHHHHTT---CCHHHHHHHHHTTTSCSHHHHHHHHHCCCC
T ss_pred CCCCCccCHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 4789999999999999999 999999999999999999999999999995
No 53
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.65 E-value=5.5e-16 Score=139.97 Aligned_cols=78 Identities=35% Similarity=0.544 Sum_probs=73.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~~ 80 (402)
|+|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|||++|++|||+++.++..
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHC---cCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999987654
Q ss_pred C
Q 015700 81 S 81 (402)
Q Consensus 81 ~ 81 (402)
.
T Consensus 78 k 78 (169)
T 3l0w_B 78 G 78 (169)
T ss_dssp -
T ss_pred c
Confidence 3
No 54
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=4e-16 Score=130.42 Aligned_cols=74 Identities=23% Similarity=0.152 Sum_probs=68.4
Q ss_pred CEEEEEeCCC---cEEEEEeC--------C-CCcHHHHHHHHHHHh--CCCCCCCCC-eEEEeCCeecCCCCchhhhccC
Q 015700 1 MKVFVKTLKG---THFEIEVK--------P-EDKVSDVKKNIETVQ--GSDVYPASQ-QMLIHQGKVLKDVTTLEENKVA 65 (402)
Q Consensus 1 MkI~VKtl~g---~~~~ieV~--------~-~~TV~~LK~kI~~~~--g~~~ip~~~-QrLIy~GKiL~D~~tL~dygI~ 65 (402)
|+|+||+.++ ++|.|+|+ + ++||.+||++|+.+. | +++++ |||||+||+|+|+++|++|+|+
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~g---ip~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQES---VPDPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTT---CCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccC---CChhhcEEEEECCeECCCCCcHHHcCCC
Confidence 7899999999 88999954 4 499999999999999 8 99999 9999999999999999999999
Q ss_pred CCcEEEEEEecC
Q 015700 66 ENSFVVVMLTKS 77 (402)
Q Consensus 66 ~gs~I~v~v~k~ 77 (402)
++++|||+++.+
T Consensus 90 ~g~~i~lv~~~~ 101 (107)
T 1x1m_A 90 PGSTVHVLRKSW 101 (107)
T ss_dssp TTCEEEEEESSC
T ss_pred CCCEEEEEeCCC
Confidence 999999998754
No 55
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=2.6e-16 Score=129.25 Aligned_cols=72 Identities=21% Similarity=0.276 Sum_probs=67.4
Q ss_pred CEEEEEeCCCcEE-EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecC
Q 015700 1 MKVFVKTLKGTHF-EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (402)
Q Consensus 1 MkI~VKtl~g~~~-~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~ 77 (402)
|+|+|| +.|++| .|+|++++||.+||++|++++| +|+++|||+|+||+|+|+ +|++|||+++++|+||.+..
T Consensus 8 m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tg---ip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 8 YSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTG---VQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp EEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTC---CCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred EEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 689999 578999 6999999999999999999999 999999999999999999 99999999999999997643
No 56
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.64 E-value=8.7e-16 Score=129.12 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=72.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k 78 (402)
|+|+||+++|+.+.++|++++||.+||++|+.+.| +++++|||+|+||.|+|+++|++|+|+++++|+|+++.++
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC---CCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHC---cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998754
No 57
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=1.2e-15 Score=123.74 Aligned_cols=73 Identities=29% Similarity=0.408 Sum_probs=67.1
Q ss_pred CEEEEEeCCCcEEEEEeCCC-----CcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCC-CCchhhhccCCCcEEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPE-----DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD-VTTLEENKVAENSFVVVML 74 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~-----~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D-~~tL~dygI~~gs~I~v~v 74 (402)
|+|+||+ .|+.+.|+|+++ +||.+||++|+...| +|+++|||+|+||.|+| +++|++|+|+++++|+|+.
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~g---ip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIG---VPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTC---CCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHC---cCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 6899997 588999999995 999999999999999 99999999999999998 6689999999999999997
Q ss_pred ecC
Q 015700 75 TKS 77 (402)
Q Consensus 75 ~k~ 77 (402)
++.
T Consensus 84 ~~~ 86 (92)
T 1wxv_A 84 KKN 86 (92)
T ss_dssp CCS
T ss_pred cCC
Confidence 543
No 58
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.63 E-value=9.7e-16 Score=124.15 Aligned_cols=72 Identities=25% Similarity=0.409 Sum_probs=68.3
Q ss_pred CEEEEEeCCCcEEEE-EeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE---eCCeecCCCCchhhhccCCCcEEEEEEec
Q 015700 1 MKVFVKTLKGTHFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLI---HQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (402)
Q Consensus 1 MkI~VKtl~g~~~~i-eV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLI---y~GKiL~D~~tL~dygI~~gs~I~v~v~k 76 (402)
|+|+||. .|++|.| +|++++||.+||++|+++.| +|+++|||+ |+||+|+|+.+|++|+|++|++|+||.+.
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~g---ip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTG---VLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTC---CCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHC---cCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 7899995 8899999 99999999999999999999 999999999 99999999999999999999999999753
No 59
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.63 E-value=4e-16 Score=129.07 Aligned_cols=71 Identities=20% Similarity=0.239 Sum_probs=64.3
Q ss_pred CEEEEEeCCCc--EEEEEeCCCCcHHHHHHHHHHHh-CCCCCCCCCeEEEeCCeecCCCCchhhh--ccCCCcEEEEE
Q 015700 1 MKVFVKTLKGT--HFEIEVKPEDKVSDVKKNIETVQ-GSDVYPASQQMLIHQGKVLKDVTTLEEN--KVAENSFVVVM 73 (402)
Q Consensus 1 MkI~VKtl~g~--~~~ieV~~~~TV~~LK~kI~~~~-g~~~ip~~~QrLIy~GKiL~D~~tL~dy--gI~~gs~I~v~ 73 (402)
|+|+||+++|+ .++|+|++++||.+||++|+.++ |. +++++|||||+||+|+|+++|++| +|+++++|+|+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~--pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSK--PLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTC--CCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCC--CChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 78999999998 67899999999999999999975 51 456999999999999999999999 99999999974
No 60
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.3e-15 Score=128.83 Aligned_cols=76 Identities=33% Similarity=0.522 Sum_probs=72.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~ 79 (402)
++|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+..
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG 85 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 85 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 48999999999999999999999999999999999 99999999999999999999999999999999999987654
No 61
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2.2e-16 Score=130.89 Aligned_cols=72 Identities=29% Similarity=0.517 Sum_probs=68.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEec
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k 76 (402)
|+|+||+ +|+.+.|+|++++||.+||++|+.+.| +|+++|||+|+||.|+|+.+|++|||++|++|+|+++.
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHS---CCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHC---cChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 5688997 899999999999999999999999999 99999999999999999999999999999999999764
No 62
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.62 E-value=5.5e-16 Score=131.87 Aligned_cols=72 Identities=22% Similarity=0.290 Sum_probs=67.8
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccC-------CCcEEEE
Q 015700 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVA-------ENSFVVV 72 (402)
Q Consensus 1 MkI~VKtl~g~-~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~-------~gs~I~v 72 (402)
|.++|+.+.++ ++.++|++++||.+||++|+.+.| +|+++|||||+||+|+|+++|++|||+ ++++|+|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~eg---IP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L 77 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK---RPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhC---CCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEE
Confidence 77888887776 589999999999999999999999 999999999999999999999999999 6999999
Q ss_pred EEe
Q 015700 73 MLT 75 (402)
Q Consensus 73 ~v~ 75 (402)
+++
T Consensus 78 ~lr 80 (118)
T 2fnj_B 78 AFR 80 (118)
T ss_dssp EEB
T ss_pred Eec
Confidence 998
No 63
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.62 E-value=6.9e-16 Score=132.80 Aligned_cols=77 Identities=21% Similarity=0.226 Sum_probs=65.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCC---CC--CCCCeEEEeCCeecCCCCchhhhccCCCcE--EEEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSD---VY--PASQQMLIHQGKVLKDVTTLEENKVAENSF--VVVM 73 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~---~i--p~~~QrLIy~GKiL~D~~tL~dygI~~gs~--I~v~ 73 (402)
|+|+||+++|++++|+|++++||.+||++|+..++.+ .+ ++++|||||+||+|+|+++|++|+|+++++ |+|+
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 6899999999999999999999999999999943211 15 489999999999999999999999998885 5555
Q ss_pred EecC
Q 015700 74 LTKS 77 (402)
Q Consensus 74 v~k~ 77 (402)
++.+
T Consensus 98 ~r~~ 101 (125)
T 2gow_A 98 ARET 101 (125)
T ss_dssp ECSC
T ss_pred ecCC
Confidence 5443
No 64
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.62 E-value=1e-15 Score=135.68 Aligned_cols=76 Identities=24% Similarity=0.292 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~ 79 (402)
|+|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+|+.|+|+.+|++|+|++|++|+|+++.++.
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHC---CCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999987764
No 65
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.62 E-value=9.4e-16 Score=131.86 Aligned_cols=79 Identities=16% Similarity=0.261 Sum_probs=67.7
Q ss_pred CEEEEEeCCCcEE-EEEeCCCCcHHHHHHHHHHHhCC--CCCCC--CCeEEEeCCeecCCCCchhhhccCCC------cE
Q 015700 1 MKVFVKTLKGTHF-EIEVKPEDKVSDVKKNIETVQGS--DVYPA--SQQMLIHQGKVLKDVTTLEENKVAEN------SF 69 (402)
Q Consensus 1 MkI~VKtl~g~~~-~ieV~~~~TV~~LK~kI~~~~g~--~~ip~--~~QrLIy~GKiL~D~~tL~dygI~~g------s~ 69 (402)
|+|+||+++|+.| .+++++++||.+||++|+..++. ..+|+ ++|||||+||+|+|+++|++|+|+++ .+
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6899999999988 69999999999999999765431 12775 79999999999999999999999998 56
Q ss_pred EEEEEecCCC
Q 015700 70 VVVMLTKSKV 79 (402)
Q Consensus 70 I~v~v~k~k~ 79 (402)
+||+++.+..
T Consensus 97 mhlVlrl~g~ 106 (126)
T 1se9_A 97 MHVIIQAPVT 106 (126)
T ss_dssp EEEEECCCSS
T ss_pred EEEEeccCCc
Confidence 8888876643
No 66
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.62 E-value=6.6e-16 Score=131.08 Aligned_cols=73 Identities=22% Similarity=0.286 Sum_probs=69.2
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCC-------CcEEEE
Q 015700 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAE-------NSFVVV 72 (402)
Q Consensus 1 MkI~VKtl~g~-~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~-------gs~I~v 72 (402)
|.|+|+...++ ++.++|++++||.+||++|+.+.| +|+++|||||+||+|+|++||++|||++ +++|+|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~g---iPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~L 77 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK---RPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHC---CCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEE
Confidence 78888887777 788999999999999999999999 9999999999999999999999999999 999999
Q ss_pred EEec
Q 015700 73 MLTK 76 (402)
Q Consensus 73 ~v~k 76 (402)
+++.
T Consensus 78 vlr~ 81 (118)
T 4ajy_B 78 AFRA 81 (118)
T ss_dssp EECC
T ss_pred EEec
Confidence 9986
No 67
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.62 E-value=9.8e-16 Score=128.73 Aligned_cols=76 Identities=24% Similarity=0.324 Sum_probs=72.2
Q ss_pred CEEEEEeC---CCcEEEEEeCC-CCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEec
Q 015700 1 MKVFVKTL---KGTHFEIEVKP-EDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (402)
Q Consensus 1 MkI~VKtl---~g~~~~ieV~~-~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k 76 (402)
|+|+||+. +|+.+.++|++ ++||.+||++|+...| +|+++|||+|+||+|+|+.+|++|+|++|++|+|+++.
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~g---ip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQ---IPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTT---CCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHC---CCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 68999998 88999999998 9999999999999999 99999999999999999999999999999999999987
Q ss_pred CCC
Q 015700 77 SKV 79 (402)
Q Consensus 77 ~k~ 79 (402)
+..
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 754
No 68
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.61 E-value=9.2e-16 Score=125.62 Aligned_cols=71 Identities=23% Similarity=0.365 Sum_probs=65.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEec
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k 76 (402)
|+|+|| +.+++|.|+|++++||.+||++|+.++| +|+++|||+|+||+| |+.+|++|+|+++++|+||.++
T Consensus 18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tg---ip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITG---LPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHC---SCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCSS
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEecc
Confidence 678999 6789999999999999999999999999 999999999999999 5569999999999999998754
No 69
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.60 E-value=2.3e-15 Score=120.72 Aligned_cols=70 Identities=24% Similarity=0.436 Sum_probs=66.4
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEe
Q 015700 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (402)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~ 75 (402)
+++++++|+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|||++|++|+|+++
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITN---VLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHC---CCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 567778999999999999999999999999999 9999999999999999999999999999999999864
No 70
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.60 E-value=2.1e-15 Score=135.63 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=72.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k 78 (402)
|+|+||+++|+++.|+|++++||.+||++|+.+.| +|+++|||+|+|+.|+|+.+|++|||+++++|+|+++.+.
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~g 95 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 95 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCccccccCCHhHcCCcccceeeeeecccc
Confidence 79999999999999999999999999999999999 9999999999999999999999999999999999997543
No 71
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.60 E-value=1.7e-15 Score=139.04 Aligned_cols=77 Identities=35% Similarity=0.543 Sum_probs=73.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~~ 80 (402)
|+|+||+++|+++.|+|++++||.+||++|+.+.| +|+++|||+|+||+|+|+.+|++|+|+++++|+|+++.++..
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~g---Ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~ 182 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 182 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccC---CCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999877643
No 72
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.59 E-value=2.8e-15 Score=132.90 Aligned_cols=73 Identities=30% Similarity=0.420 Sum_probs=70.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE-e-CCeecCCCCchhhhccCCCcEEEEEEec
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI-H-QGKVLKDVTTLEENKVAENSFVVVMLTK 76 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLI-y-~GKiL~D~~tL~dygI~~gs~I~v~v~k 76 (402)
|+|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+ | +|+.|+|+.+|++|||++|++|+|+++.
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~ 77 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIG---VHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDK 77 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHC---CCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccC
Confidence 79999999999999999999999999999999999 999999999 9 7999999999999999999999999873
No 73
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.59 E-value=3.6e-15 Score=124.37 Aligned_cols=72 Identities=19% Similarity=0.253 Sum_probs=68.0
Q ss_pred CEEEEEeCCC--cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhcc-CCCcEEEEEEe
Q 015700 1 MKVFVKTLKG--THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV-AENSFVVVMLT 75 (402)
Q Consensus 1 MkI~VKtl~g--~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI-~~gs~I~v~v~ 75 (402)
|+|+|++..+ .+++|+|++++||.+||++|++++| +|++.|||||+|+.|+|+++|.+||| ++|++|||++-
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~G---ipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYG---FPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhC---CCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 6899999874 6899999999999999999999999 99999999999999999999999999 59999999985
No 74
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=5.3e-15 Score=125.09 Aligned_cols=74 Identities=24% Similarity=0.282 Sum_probs=67.5
Q ss_pred EEEEE-eCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCC
Q 015700 2 KVFVK-TLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (402)
Q Consensus 2 kI~VK-tl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k 78 (402)
.|+|+ ...++.++++++++.||++||++|+.+.+ +|++.|||||+||+|+|+.||++|||++|.+|||+++...
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~---iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~ 91 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLG---IPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTN 91 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHT---CCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESC
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhC---CChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCC
Confidence 45555 55688999999999999999999999999 9999999999999999999999999999999999997643
No 75
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.57 E-value=1.7e-16 Score=136.87 Aligned_cols=77 Identities=35% Similarity=0.540 Sum_probs=0.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~~ 80 (402)
|+|+||+++|+++.|+|++++||.+||.+|+...| +|+++|+|+|+|+.|+|+.+|++|||++|++|+|+++.++..
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC---cChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999876643
No 76
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.56 E-value=1.2e-14 Score=126.98 Aligned_cols=74 Identities=38% Similarity=0.618 Sum_probs=71.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~ 77 (402)
|+|+||+++|+.+.++|++++||.+||++|+.+.| +|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+.+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~ 74 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCT
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecc
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999998643
No 77
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.55 E-value=1.5e-14 Score=122.30 Aligned_cols=77 Identities=23% Similarity=0.335 Sum_probs=70.1
Q ss_pred CEEEEEeC----------CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEE
Q 015700 1 MKVFVKTL----------KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFV 70 (402)
Q Consensus 1 MkI~VKtl----------~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I 70 (402)
++|+|+.. +|+++.|+|++++||.+||++|+...| +|+++|||+|+|+.|+|+.+|++|+|+++++|
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i 102 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATG---MPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSS---CCTTTEEEEETTEEECTTSBHHHHTCCSSCEE
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHC---CChHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 35777764 478999999999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEecCCCC
Q 015700 71 VVMLTKSKVS 80 (402)
Q Consensus 71 ~v~v~k~k~~ 80 (402)
||+++.++..
T Consensus 103 ~lv~rl~GGk 112 (115)
T 1we7_A 103 HLALKERSGP 112 (115)
T ss_dssp EEEECCCSCC
T ss_pred EEEEEcCCCC
Confidence 9999877643
No 78
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.55 E-value=1.5e-14 Score=126.29 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=72.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k 78 (402)
|+|+||+++|+.+.++|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.++
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G 151 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 68999999999999999999999999999999999 9999999999999999999999999999999999998764
No 79
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.54 E-value=7.9e-15 Score=131.93 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=69.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k 78 (402)
|.|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+|+.|+|+++|.+|+|++|++|||+++.++
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrg 171 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 171 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC----
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhC---CCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCC
Confidence 57899999999999999999999999999999999 9999999999999999999999999999999999998654
No 80
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.54 E-value=7e-16 Score=137.04 Aligned_cols=77 Identities=35% Similarity=0.549 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~~ 80 (402)
|+|+||+++|+++.|+|++++||.+||.+|+...| +|+++|||+|+|+.|+|+.+|++|+|++|++|+|+++.++..
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999876653
No 81
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=8.1e-15 Score=118.58 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=63.3
Q ss_pred CEEEEEeCCCcEE--EE-EeCCCCcHHHHHHHHHHH-hCCCCCCCCCeEEEeC--CeecCCCCchhhhccCCCcEEEE
Q 015700 1 MKVFVKTLKGTHF--EI-EVKPEDKVSDVKKNIETV-QGSDVYPASQQMLIHQ--GKVLKDVTTLEENKVAENSFVVV 72 (402)
Q Consensus 1 MkI~VKtl~g~~~--~i-eV~~~~TV~~LK~kI~~~-~g~~~ip~~~QrLIy~--GKiL~D~~tL~dygI~~gs~I~v 72 (402)
|+|+||+++|+++ .| +|++++||.+||++|++. .| +++++|||+|. ||+|+|+++|++|+|+++++|||
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~---i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQ---WYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSS---SCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcC---CChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 7899999998775 58 999999999999999995 67 99999999976 99999999999999999999875
No 82
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=2.8e-14 Score=118.15 Aligned_cols=71 Identities=20% Similarity=0.314 Sum_probs=65.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCCCchhhhccCCCcEEEEEEe
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVLKDVTTLEENKVAENSFVVVMLT 75 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy--~GKiL~D~~tL~dygI~~gs~I~v~v~ 75 (402)
|.+++++++|+++.|+|++++||.+||.+|++++| ||+++|||+| .|+ |+|+.+|++|+|++|++|||++.
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tg---Ipp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~ 81 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQ---IPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTP 81 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHC---CCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHC---CChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEec
Confidence 56777889999999999999999999999999999 9999999996 565 99999999999999999998764
No 83
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.46 E-value=9.5e-14 Score=136.07 Aligned_cols=74 Identities=38% Similarity=0.618 Sum_probs=69.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~ 77 (402)
|+|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+||+|+|+++|++|+|+++++|+|+++.+
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~G---Ip~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999998753
No 84
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.44 E-value=9.6e-14 Score=111.82 Aligned_cols=73 Identities=15% Similarity=0.070 Sum_probs=63.9
Q ss_pred EEEEE--eCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe-------CCeecCCCCchhhhccCCCcEEEE
Q 015700 2 KVFVK--TLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH-------QGKVLKDVTTLEENKVAENSFVVV 72 (402)
Q Consensus 2 kI~VK--tl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy-------~GKiL~D~~tL~dygI~~gs~I~v 72 (402)
+|.|. ..+.+.+++.+++++||.+||.+|+.++| +|+++||||| .|+.|+|+++|++|||++|++|||
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~G---ip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFA---TPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSC---CCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEE
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHC---CCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEE
Confidence 44554 33566788999999999999999999999 9999999997 589999999999999999999999
Q ss_pred EEecC
Q 015700 73 MLTKS 77 (402)
Q Consensus 73 ~v~k~ 77 (402)
+-+.|
T Consensus 81 vd~~P 85 (86)
T 4b6w_A 81 VDLQP 85 (86)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 97653
No 85
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.43 E-value=1.7e-13 Score=114.52 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=65.6
Q ss_pred CEEEEEeCCCcEEEEEeC-CCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCe-----------e----cCCCCchhhhcc
Q 015700 1 MKVFVKTLKGTHFEIEVK-PEDKVSDVKKNIETVQGSDVYPASQQMLIHQGK-----------V----LKDVTTLEENKV 64 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~-~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GK-----------i----L~D~~tL~dygI 64 (402)
|+|+||+.+|+. .|+|+ +++||.+||++|+.+++ +|++.|+|+|.|+ . ++|+++|++|||
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~g---ip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi 83 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQ---IPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNL 83 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSC---CCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhC---cCcccCEEEECCccccccCccccccccccCCCCCCHHHCCC
Confidence 789999999965 79999 99999999999999999 9999999999998 3 588999999999
Q ss_pred CCCcEEEEEEe
Q 015700 65 AENSFVVVMLT 75 (402)
Q Consensus 65 ~~gs~I~v~v~ 75 (402)
++|++|||+..
T Consensus 84 ~~G~~L~l~~~ 94 (107)
T 1wf9_A 84 AHGSMVYLAYE 94 (107)
T ss_dssp CTTCEEECCCS
T ss_pred CCCCEEEEEeC
Confidence 99999998865
No 86
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.43 E-value=4.5e-13 Score=109.89 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=62.3
Q ss_pred CEEEEEeCCC--cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC--Ce---ec-CCCCchhhhccCCCcEEEE
Q 015700 1 MKVFVKTLKG--THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ--GK---VL-KDVTTLEENKVAENSFVVV 72 (402)
Q Consensus 1 MkI~VKtl~g--~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~--GK---iL-~D~~tL~dygI~~gs~I~v 72 (402)
++|+|+...+ +.++++|++++||.+||++|+.++| +|+++|||+|. |+ .| +|+++|++|+|++|++|+|
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~G---iP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTG---GCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHC---SCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHC---cCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 3677887655 4789999999999999999999999 99999999998 55 34 8999999999999999998
Q ss_pred E
Q 015700 73 M 73 (402)
Q Consensus 73 ~ 73 (402)
+
T Consensus 93 v 93 (95)
T 2kjr_A 93 V 93 (95)
T ss_dssp E
T ss_pred E
Confidence 7
No 87
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.39 E-value=8.1e-13 Score=108.76 Aligned_cols=71 Identities=11% Similarity=0.019 Sum_probs=62.4
Q ss_pred EEEEEeCCC--cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCe---e----cCCCCchhhhccCCCcEEEE
Q 015700 2 KVFVKTLKG--THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGK---V----LKDVTTLEENKVAENSFVVV 72 (402)
Q Consensus 2 kI~VKtl~g--~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GK---i----L~D~~tL~dygI~~gs~I~v 72 (402)
+|+|+.... +.++++|++++||.+||++|+.++| +|+++|||+|.|+ . ++|+++|++|+|++|++|+|
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~G---ip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCG---TSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHC---CCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHC---cCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 567776443 5789999999999999999999999 9999999999883 3 58899999999999999999
Q ss_pred EEe
Q 015700 73 MLT 75 (402)
Q Consensus 73 ~v~ 75 (402)
+-.
T Consensus 93 vd~ 95 (97)
T 2kj6_A 93 IDL 95 (97)
T ss_dssp EEC
T ss_pred EeC
Confidence 864
No 88
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.39 E-value=1.1e-12 Score=112.81 Aligned_cols=41 Identities=29% Similarity=0.471 Sum_probs=38.2
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCC-CC
Q 015700 360 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH-EF 400 (402)
Q Consensus 360 ~ai~rL~~lGf~~~~viqay~acdkneelAan~L~~~~~-d~ 400 (402)
+.|++|++|||+|+.|++|+.+|++|++.|++|||++.. |.
T Consensus 80 ~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~~~~d~ 121 (126)
T 2lbc_A 80 EIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEE 121 (126)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCcc
Confidence 569999999999999999999999999999999999877 43
No 89
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.38 E-value=3.9e-14 Score=129.65 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=0.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~~ 80 (402)
|+|+||+++|++|+|+|++++||.+||.+|+...| ||+++|||||+|++|+|+.+|+ ++++|||+++.+...
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keG---IP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMG---FEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhC---cChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCc
Confidence 89999999999999999999999999999999999 9999999999999999999998 889999999876543
No 90
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.38 E-value=1e-12 Score=107.32 Aligned_cols=73 Identities=22% Similarity=0.209 Sum_probs=63.7
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee----cCCCCchhhhccCCCcEEEE
Q 015700 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV----LKDVTTLEENKVAENSFVVV 72 (402)
Q Consensus 1 MkI~VKtl~g~-~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~G---Ki----L~D~~tL~dygI~~gs~I~v 72 (402)
++|+|+..... .++++|++++||.+||++|+.+.| +|+++|||+|.| +. |+|+++|.+|||++|++|||
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~g---ip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVG---SPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTC---SCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHC---CCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEE
Confidence 36778876553 688999999999999999999999 999999999986 54 58999999999999999998
Q ss_pred EEec
Q 015700 73 MLTK 76 (402)
Q Consensus 73 ~v~k 76 (402)
+...
T Consensus 85 ~d~~ 88 (95)
T 1v6e_A 85 IDHS 88 (95)
T ss_dssp BCCS
T ss_pred EECC
Confidence 8643
No 91
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.36 E-value=8.9e-13 Score=105.63 Aligned_cols=71 Identities=17% Similarity=0.304 Sum_probs=63.6
Q ss_pred CEEEEEeCCCcEEEEE-eCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC--CeecC---CCCchhhhccCCCcEEEEEE
Q 015700 1 MKVFVKTLKGTHFEIE-VKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ--GKVLK---DVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 1 MkI~VKtl~g~~~~ie-V~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~--GKiL~---D~~tL~dygI~~gs~I~v~v 74 (402)
|+|+||+.+|+. .++ |++++||.+||.+|+++.| +++++|+|+|+ +|.|. |+++|++|||++|++|+|..
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~g---i~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITG---IAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTC---CCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhC---CCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 899999999965 477 9999999999999999999 99999999986 58874 68899999999999998875
Q ss_pred e
Q 015700 75 T 75 (402)
Q Consensus 75 ~ 75 (402)
.
T Consensus 77 ~ 77 (86)
T 2kzr_A 77 D 77 (86)
T ss_dssp C
T ss_pred C
Confidence 4
No 92
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.31 E-value=3.8e-12 Score=104.13 Aligned_cols=76 Identities=14% Similarity=0.206 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~ 79 (402)
|+|+||+.+|+.+.+.|.+++++..||++++++.| ++++.+||+|.|+.|.++.|+++|++.++++|+|+++.++.
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 67999999999999999999999999999999999 99999999999999999999999999999999999987654
No 93
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.29 E-value=3.5e-12 Score=89.46 Aligned_cols=40 Identities=23% Similarity=0.327 Sum_probs=38.1
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCC
Q 015700 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214 (402)
Q Consensus 172 ~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~GI 214 (402)
.++.|++|++|| |+|++|++|||+++||++||++||++||
T Consensus 4 ~e~~i~~L~~MG---F~~~~a~~AL~~~~~n~e~A~~~L~~~~ 43 (43)
T 2g3q_A 4 KSLAVEELSGMG---FTEEEAHNALEKCNWDLEAATNFLLDSA 43 (43)
T ss_dssp HHHHHHHHHTTT---SCHHHHHHHHHHHTSCHHHHHHHHHTCC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCcCHHHHHHHHHcCC
Confidence 368999999999 9999999999999999999999999986
No 94
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.29 E-value=7.9e-12 Score=106.79 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=64.4
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee----cCCCCchhhhccCCCcEEEE
Q 015700 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV----LKDVTTLEENKVAENSFVVV 72 (402)
Q Consensus 1 MkI~VKtl~g~-~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~G---Ki----L~D~~tL~dygI~~gs~I~v 72 (402)
|+|+|+...+. .++++|++++||.+||.+|+.+.| +|+++|||+|.| +. ++|+++|.+|||++|++|||
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~G---ip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVG---TTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHC---CCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhC---CCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 46778876553 688999999999999999999999 999999999987 43 48899999999999999999
Q ss_pred EEecC
Q 015700 73 MLTKS 77 (402)
Q Consensus 73 ~v~k~ 77 (402)
+...+
T Consensus 84 vd~~p 88 (122)
T 1t0y_A 84 VDVTG 88 (122)
T ss_dssp EECTT
T ss_pred EeCCC
Confidence 97543
No 95
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.28 E-value=2.4e-12 Score=127.08 Aligned_cols=71 Identities=18% Similarity=0.288 Sum_probs=65.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE---eCCeecCCCCchhhhccCCCcEEEEEEe
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI---HQGKVLKDVTTLEENKVAENSFVVVMLT 75 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLI---y~GKiL~D~~tL~dygI~~gs~I~v~v~ 75 (402)
|+|+|| ++|++|.|+|++++||.+||++|++++| +|+++|||| |+||+|+|+.+|++|||++|++|+||.+
T Consensus 6 i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tg---Vpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs 79 (320)
T 3shq_A 6 VVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQ---VRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGS 79 (320)
T ss_dssp EEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECC
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEcc
Confidence 578999 6899999999999999999999999999 999999999 8999999999999999999999999964
No 96
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.28 E-value=3.7e-12 Score=99.33 Aligned_cols=44 Identities=36% Similarity=0.389 Sum_probs=40.7
Q ss_pred CchHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCCC
Q 015700 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215 (402)
Q Consensus 169 g~~~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~GIP 215 (402)
.+.+++.|++||+|| |+|++|++|||+++||+|||||||++|+.
T Consensus 26 ~~~~ee~I~~L~eMG---F~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 26 VAASEEQIQKLVAMG---FDRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp SCCCHHHHHHHHTTT---CCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred CcccHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 345789999999999 99999999999999999999999999844
No 97
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.27 E-value=6e-12 Score=98.27 Aligned_cols=46 Identities=17% Similarity=0.340 Sum_probs=42.8
Q ss_pred CchHHHHHHHHHHcCCCCC-CHHHHHHHHHHhhCCHHHHHHHHHcCCCCC
Q 015700 169 GSNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIPEQ 217 (402)
Q Consensus 169 g~~~e~~v~~i~~MG~~~f-~reqV~~ALrAafnNPdRAvEyL~~GIP~~ 217 (402)
...|+..|++|++|| | +|+.+++||+++++|++||||||++|||+.
T Consensus 26 e~~ye~qi~qL~eMG---F~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 26 EGRYQQELEELKALG---FANRDANLQALVATDGDIHAAIEMLLGASGPS 72 (74)
T ss_dssp TTTSHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHTCCCCC
T ss_pred hHHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 456899999999999 9 899999999999999999999999998864
No 98
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.26 E-value=2e-11 Score=94.74 Aligned_cols=71 Identities=15% Similarity=0.227 Sum_probs=68.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
|+|+|++.+|+.+.+.|..++++..||++++++.| +++..+||+|.|+.|.++.|.++|++.+|++|+|++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHT---CCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 68999999999999999999999999999999999 999999999999999999999999999999999874
No 99
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=99.26 E-value=6e-12 Score=89.68 Aligned_cols=41 Identities=29% Similarity=0.464 Sum_probs=38.3
Q ss_pred chHHHHHHHHHHcCCCCC-CHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015700 170 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 213 (402)
Q Consensus 170 ~~~e~~v~~i~~MG~~~f-~reqV~~ALrAafnNPdRAvEyL~~G 213 (402)
..|+..|++|++|| | +|+.+++||+++++|++||||||++|
T Consensus 5 ~~~~~~i~~L~~MG---F~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 5 ERYEHQLRQLNDMG---FFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHTHHHHHHHHHTT---CCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 35889999999999 9 78999999999999999999999986
No 100
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.24 E-value=2.9e-11 Score=98.33 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=71.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k 78 (402)
|+|+||+.+|+.+.+.|..++++..||++++++.| +++..+||+|.|+.|.++.|.++|++.+|++|.|++...+
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~g 80 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 80 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTT---CCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 57899999999999999999999999999999999 9999999999999999999999999999999999987655
No 101
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.21 E-value=6.3e-11 Score=93.69 Aligned_cols=70 Identities=13% Similarity=0.236 Sum_probs=67.0
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEE
Q 015700 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 1 MkI~VKtl~g~-~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~ 73 (402)
|+|+|++.+|+ .+.+.|..++++..||++++++.| ++++.+||+|.|+.|.++.|.++|++.+|++|+|+
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMG---LSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHT---CTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 57899999996 899999999999999999999999 89999999999999999999999999999999987
No 102
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=99.21 E-value=1.5e-11 Score=90.15 Aligned_cols=43 Identities=26% Similarity=0.375 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHcCCCCC-CHHHHHHHHHHhhCCHHHHHHHHHcCCC
Q 015700 170 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIP 215 (402)
Q Consensus 170 ~~~e~~v~~i~~MG~~~f-~reqV~~ALrAafnNPdRAvEyL~~GIP 215 (402)
..|+..|++|++|| | +|+.+++||++++||.+||||||++|++
T Consensus 9 ~~~~~~l~~L~~MG---F~~~~~~~~AL~~t~gnve~Ave~L~~~~~ 52 (53)
T 2knz_A 9 VRFQQQLEQLNSMG---FINREANLQALIATGGDINAAIERLLGSQL 52 (53)
T ss_dssp HHHHHHHHHHHTTT---CCCHHHHHHHHHHHTSCHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 46899999999999 9 9999999999999999999999999865
No 103
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.19 E-value=2e-11 Score=97.29 Aligned_cols=44 Identities=27% Similarity=0.381 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHc--C-CCCCC
Q 015700 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS--G-IPEQT 218 (402)
Q Consensus 172 ~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~--G-IP~~~ 218 (402)
.+..|++||+|| |+|++|++|||+++||++||+|||++ | ||+.+
T Consensus 29 ~ee~I~~Lv~MG---F~~~~A~~AL~~t~gdve~A~e~L~sh~~~ip~~~ 75 (83)
T 1veg_A 29 SQESINQLVYMG---FDTVVAEAALRVFGGNVQLAAQTLAHHGGSLPPDL 75 (83)
T ss_dssp CHHHHHHHHHHS---CCHHHHHHHHHHTTTCHHHHHHHHHHHTSSCCTTS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCCCchhh
Confidence 478999999999 99999999999999999999999999 7 77654
No 104
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.19 E-value=5.5e-11 Score=99.00 Aligned_cols=76 Identities=14% Similarity=0.211 Sum_probs=71.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~ 79 (402)
|+|+|++.+|+.+.|.|..++++..||.+++++.| +++..+||+|.|+.|.++.|+.+|++.++++|+|++.....
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 100 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG 100 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHT---CCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 57899999999999999999999999999999999 99999999999999999999999999999999999876553
No 105
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=99.19 E-value=1.3e-10 Score=98.73 Aligned_cols=41 Identities=22% Similarity=0.359 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015700 357 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 397 (402)
Q Consensus 357 ee~~ai~rL~~lGf~~~~viqay~acdkneelAan~L~~~~ 397 (402)
+..+.|.+|++|||++.+|.+|+..|+.|.+.|..|||..-
T Consensus 75 ~~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~~~ 115 (118)
T 4ae4_A 75 EFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMARA 115 (118)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 35578999999999999999999999999999999999753
No 106
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.18 E-value=6.1e-11 Score=96.68 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=69.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~ 77 (402)
|+|+|++.+|+.+.+.|..++++..|+..++++.| ++++.+||+|.|+.|.++.|+++|++.+|++|+|++...
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 91 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhC---CCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 57889988999999999999999999999999999 899999999999999999999999999999999998754
No 107
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=99.15 E-value=4.1e-11 Score=87.52 Aligned_cols=41 Identities=27% Similarity=0.428 Sum_probs=39.0
Q ss_pred chHHHHHHHHHHcCCCCC-CHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015700 170 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 213 (402)
Q Consensus 170 ~~~e~~v~~i~~MG~~~f-~reqV~~ALrAafnNPdRAvEyL~~G 213 (402)
..|+..|++|++|| | +|+.|++||++++||.+||||||++|
T Consensus 10 ~~~~~~l~~L~~MG---F~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 10 VRFQQQLEQLSAMG---FLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp TTTHHHHHHHHHTT---CCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 56899999999999 9 99999999999999999999999876
No 108
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.14 E-value=4.8e-11 Score=83.61 Aligned_cols=38 Identities=37% Similarity=0.541 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015700 359 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 396 (402)
Q Consensus 359 ~~ai~rL~~lGf~~~~viqay~acdkneelAan~L~~~ 396 (402)
.++|++|++|||+|+.|++|+.+|++|.+.|++|||++
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 47899999999999999999999999999999999986
No 109
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.12 E-value=1.2e-10 Score=97.93 Aligned_cols=75 Identities=15% Similarity=0.248 Sum_probs=70.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k 78 (402)
|+|+|++.+|+.+.|.|..++++..||.+++++.| +++..+||+|.|+.|.++.|+++|++.++++|+|++....
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~g---i~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQG---ISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTG 101 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHT---CCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccC
Confidence 57899999999999999999999999999999999 9999999999999999999999999999999999987644
No 110
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.12 E-value=6.4e-11 Score=89.85 Aligned_cols=42 Identities=29% Similarity=0.369 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCCCC
Q 015700 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216 (402)
Q Consensus 172 ~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~GIP~ 216 (402)
.++.|++|++|| |+|++|++|||+++||++||+|||+++..+
T Consensus 9 ~~~~I~~L~~MG---F~~~~a~~AL~~~~~nve~A~e~L~~~~~~ 50 (63)
T 1wji_A 9 DEKALKHITEMG---FSKEASRQALMDNGNNLEAALNVLLTSNKQ 50 (63)
T ss_dssp CHHHHHHHHTTT---CCHHHHHHHHHHTTSCHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 478999999999 999999999999999999999999998543
No 111
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.12 E-value=6e-11 Score=88.49 Aligned_cols=41 Identities=29% Similarity=0.464 Sum_probs=39.0
Q ss_pred chHHHHHHHHHHcCCCCC-CHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015700 170 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 213 (402)
Q Consensus 170 ~~~e~~v~~i~~MG~~~f-~reqV~~ALrAafnNPdRAvEyL~~G 213 (402)
..|+..|++|++|| | +|+.+++||+++++|++||||||++|
T Consensus 15 ~~~~~qi~~L~~MG---F~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 15 ERYEHQLRQLNDMG---FFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHTHHHHHHHHHHT---CCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 56899999999999 9 79999999999999999999999988
No 112
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.10 E-value=8.2e-11 Score=89.92 Aligned_cols=45 Identities=18% Similarity=0.198 Sum_probs=41.3
Q ss_pred chHHHHHHHHHHcCCCCC-CHHHHHHHHHHhhCCHHHHHHHHHcCCCCC
Q 015700 170 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIPEQ 217 (402)
Q Consensus 170 ~~~e~~v~~i~~MG~~~f-~reqV~~ALrAafnNPdRAvEyL~~GIP~~ 217 (402)
..|+..|.+|++|| | +|+.+++|||++++|++||||||++++++.
T Consensus 17 ~~y~~ql~qL~~MG---F~d~~an~~AL~at~Gnve~Ave~L~~~~~~~ 62 (67)
T 2dna_A 17 VRFSKEMECLQAMG---FVNYNANLQALIATDGDTNAAIYKLKSSQGFS 62 (67)
T ss_dssp HHTHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 45889999999999 9 788889999999999999999999998863
No 113
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.09 E-value=2.1e-10 Score=95.74 Aligned_cols=73 Identities=11% Similarity=0.157 Sum_probs=68.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~ 77 (402)
|+|+|++ +|+.+.|.|..++++..||++++++.| +++..+||+|.|+.|.++.|.++|++.++++|.|++...
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~g---i~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~ 104 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 104 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhC---CCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 5788999 999999999999999999999999999 899999999999999999999999999999999998754
No 114
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=6.6e-11 Score=89.78 Aligned_cols=43 Identities=40% Similarity=0.677 Sum_probs=40.3
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCCCCC
Q 015700 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217 (402)
Q Consensus 172 ~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~GIP~~ 217 (402)
.++.|++|++|| |+|++|++|||+++||++||+|||+.++++.
T Consensus 9 ~~~~v~~L~~MG---F~~~~a~~AL~~t~~nve~A~e~L~~~~~d~ 51 (63)
T 2dak_A 9 PEDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFSHIDDL 51 (63)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCSHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCCc
Confidence 578999999999 9999999999999999999999999997753
No 115
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.04 E-value=1.7e-10 Score=89.99 Aligned_cols=40 Identities=20% Similarity=0.479 Sum_probs=37.9
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCC
Q 015700 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214 (402)
Q Consensus 172 ~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~GI 214 (402)
.++.|++|++|| |+|++|++|||+++||++||||||+++.
T Consensus 29 ~~~~v~~L~~MG---F~~~~a~~AL~~t~~nve~Ave~L~~~~ 68 (73)
T 1wiv_A 29 DQSSVDTLLSFG---FAEDVARKALKASGGDIEKATDWVFNNS 68 (73)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHHSC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 478999999999 9999999999999999999999999874
No 116
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=99.03 E-value=2.3e-10 Score=78.55 Aligned_cols=39 Identities=28% Similarity=0.480 Sum_probs=36.3
Q ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHH
Q 015700 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 211 (402)
Q Consensus 170 ~~~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~ 211 (402)
+++++.|++|++|| |+|+++++||+++.+|+++|++||+
T Consensus 2 ~~~~~~i~~L~~mG---f~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSMG---FDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 45788999999999 9999999999999999999999994
No 117
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.03 E-value=6.2e-10 Score=90.91 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=62.0
Q ss_pred EEEEEe---CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC------ee-c-CCCCchhhhccCCCcEE
Q 015700 2 KVFVKT---LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG------KV-L-KDVTTLEENKVAENSFV 70 (402)
Q Consensus 2 kI~VKt---l~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~G------Ki-L-~D~~tL~dygI~~gs~I 70 (402)
+|+|+. .+++.+.+.+..++||.+||.+|+..+| +|+..|||+|.+ .+ | +|..+|.+|+|.+|++|
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~g---ip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I 87 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLK---VPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCL 87 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTT---CCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHC---CChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEE
Confidence 566765 4678899999999999999999999999 999999999873 22 5 56789999999999999
Q ss_pred EEEEec
Q 015700 71 VVMLTK 76 (402)
Q Consensus 71 ~v~v~k 76 (402)
||....
T Consensus 88 ~V~d~~ 93 (97)
T 1wjn_A 88 LVRWSG 93 (97)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 998754
No 118
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.02 E-value=2.2e-10 Score=86.87 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015700 358 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 400 (402)
Q Consensus 358 e~~ai~rL~~lGf~~~~viqay~acdkneelAan~L~~~~~d~ 400 (402)
+.++|++|++|||+|+.|++||.+|++|.+.|++|||++..+.
T Consensus 9 ~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 9 DEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQK 51 (63)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHHSSCC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 4578999999999999999999999999999999999986553
No 119
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.00 E-value=1.8e-10 Score=87.63 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHHhhC-CHHHHHHHHHcCCCCC
Q 015700 171 NLEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIPEQ 217 (402)
Q Consensus 171 ~~e~~v~~i~~MG~~~f~reqV~~ALrAafn-NPdRAvEyL~~GIP~~ 217 (402)
..+..|++|++|| |+|+.|++||++++| |+++|++||+.++++.
T Consensus 8 ~~e~~v~~L~~MG---F~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~ 52 (64)
T 2crn_A 8 SSPSLLEPLLAMG---FPVHTALKALAATGRKTAEEALAWLHDHCNDP 52 (64)
T ss_dssp CSCSSHHHHHHTS---CCHHHHHHHHHHHTSCCHHHHHHHHHHHSSST
T ss_pred CCHHHHHHHHHcC---CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 3466899999999 999999999999999 9999999999998753
No 120
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=4.3e-10 Score=87.96 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhC-CHHHHHHHHHcCCCCC
Q 015700 172 LEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIPEQ 217 (402)
Q Consensus 172 ~e~~v~~i~~MG~~~f~reqV~~ALrAafn-NPdRAvEyL~~GIP~~ 217 (402)
.+..|++|++|| |+|++|++|||+++| |.++|+|||+.++++.
T Consensus 9 ~e~~v~~L~~MG---F~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~ 52 (74)
T 2dag_A 9 DESVIIQLVEMG---FPMDACRKAVYYTGNSGAEAAMNWVMSHMDDP 52 (74)
T ss_dssp CHHHHHHHHHHS---CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTST
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 478999999999 999999999999997 7999999999998764
No 121
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.99 E-value=2.6e-10 Score=86.81 Aligned_cols=42 Identities=19% Similarity=0.344 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhh-CCHHHHHHHHHcCCCCC
Q 015700 173 EATVQQILDMGGGSWDRETVIRALRAAY-NNPERAVEYLYSGIPEQ 217 (402)
Q Consensus 173 e~~v~~i~~MG~~~f~reqV~~ALrAaf-nNPdRAvEyL~~GIP~~ 217 (402)
+..|++||+|| |+|++|++|||+++ +|+++|++||+.++++.
T Consensus 10 ~~~v~~L~~MG---F~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~ 52 (64)
T 1whc_A 10 LTALESLIEMG---FPRGRAEKALALTGNQGIEAAMDWLMEHEDDP 52 (64)
T ss_dssp CCHHHHHHTTT---CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCc
Confidence 35899999999 99999999999995 89999999999997753
No 122
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=4.3e-10 Score=80.26 Aligned_cols=38 Identities=37% Similarity=0.597 Sum_probs=35.5
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015700 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (402)
Q Consensus 172 ~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~G 213 (402)
+++.|++|++|| |+|++|++|||++ ||++||+|||++.
T Consensus 9 ~~~~v~~L~~MG---F~~~~a~~AL~~~-~n~e~A~~~L~~h 46 (47)
T 2ekk_A 9 NQQQLQQLMDMG---FTREHAMEALLNT-STMEQATEYLLTH 46 (47)
T ss_dssp CHHHHHHHHHHH---CCHHHHHHHHHHS-CSHHHHHHHHHTC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHc-CCHHHHHHHHHcC
Confidence 478999999999 9999999999999 7999999999864
No 123
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.97 E-value=3.7e-10 Score=85.92 Aligned_cols=40 Identities=23% Similarity=0.408 Sum_probs=37.3
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhhC-CHHHHHHHHHcCCC
Q 015700 173 EATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIP 215 (402)
Q Consensus 173 e~~v~~i~~MG~~~f~reqV~~ALrAafn-NPdRAvEyL~~GIP 215 (402)
+..|++|++|| |+|++|++|||++.| |+++|||||++++-
T Consensus 20 e~~i~~L~~MG---F~~~~a~~AL~~t~~~nve~A~ewL~~~~~ 60 (64)
T 2cpw_A 20 GSALDVLLSMG---FPRARAQKALASTGGRSVQTACDWLFSHSG 60 (64)
T ss_dssp CCHHHHHHHHT---CCHHHHHHHHHHTTTSCHHHHHHHHHSCCS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence 46899999999 999999999999998 99999999998854
No 124
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.93 E-value=1.2e-09 Score=87.64 Aligned_cols=44 Identities=27% Similarity=0.336 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCCCC
Q 015700 358 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 401 (402)
Q Consensus 358 e~~ai~rL~~lGf~~~~viqay~acdkneelAan~L~~~~~d~~ 401 (402)
+.++|++|++|||+|+.|++||.+|++|.+.|++|||++..|.|
T Consensus 21 n~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D~D 64 (85)
T 2dkl_A 21 MSRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVDVD 64 (85)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTTSCCSS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHCcCCcc
Confidence 35779999999999999999999999999999999999998876
No 125
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.92 E-value=1.1e-09 Score=83.21 Aligned_cols=42 Identities=24% Similarity=0.359 Sum_probs=39.1
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCC-CHHHHHHHHhccCCCCC
Q 015700 360 EAIERLEAMGFDRALVLEVFFACNK-NEELAANYLLDHMHEFE 401 (402)
Q Consensus 360 ~ai~rL~~lGf~~~~viqay~acdk-neelAan~L~~~~~d~~ 401 (402)
+.|++|++|||+++.|++|+.+|+. |+|.|++|||++..|.|
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d~d 63 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSGPSS 63 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSCCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCC
Confidence 5799999999999999999999996 99999999999987765
No 126
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.91 E-value=9.2e-10 Score=85.73 Aligned_cols=47 Identities=28% Similarity=0.374 Sum_probs=43.3
Q ss_pred ccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCC
Q 015700 352 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH 398 (402)
Q Consensus 352 i~~t~ee~~ai~rL~~lGf~~~~viqay~acdkneelAan~L~~~~~ 398 (402)
.+.+++..++|++|++|||+|+.|++|+.+|++|.+.|++|||++..
T Consensus 23 ~~~~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 23 QGRVAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp CCCSCCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred ccCCcccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 56778888899999999999999999999999999999999998754
No 127
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=98.90 E-value=1.4e-09 Score=74.54 Aligned_cols=39 Identities=33% Similarity=0.488 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHh
Q 015700 356 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 394 (402)
Q Consensus 356 ~ee~~ai~rL~~lGf~~~~viqay~acdkneelAan~L~ 394 (402)
++..++|++|++|||+++.+++|+.+|++|.+.|++|||
T Consensus 2 ~~~~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 455678999999999999999999999999999999997
No 128
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=1.3e-09 Score=85.30 Aligned_cols=44 Identities=23% Similarity=0.417 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhCC-CHHHHHHHHhccCCCCC
Q 015700 358 EREAIERLEAMGFDRALVLEVFFACNK-NEELAANYLLDHMHEFE 401 (402)
Q Consensus 358 e~~ai~rL~~lGf~~~~viqay~acdk-neelAan~L~~~~~d~~ 401 (402)
+.+.|++|++|||+|..|++||++|+. |+|.|++|||++..|.|
T Consensus 9 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~d 53 (74)
T 2dag_A 9 DESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPD 53 (74)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTSTT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcc
Confidence 456799999999999999999999995 89999999999887654
No 129
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=1.3e-09 Score=87.07 Aligned_cols=44 Identities=18% Similarity=0.328 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCCCC
Q 015700 358 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 401 (402)
Q Consensus 358 e~~ai~rL~~lGf~~~~viqay~acdkneelAan~L~~~~~d~~ 401 (402)
+.++|++|++|||++..|++|+++|++|++.|+||||++..|.|
T Consensus 29 ~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~~~d~d 72 (83)
T 2dai_A 29 DEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAEDPT 72 (83)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHGGGCST
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCcc
Confidence 45679999999999999999999999999999999999876644
No 130
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.88 E-value=1.3e-09 Score=82.88 Aligned_cols=42 Identities=29% Similarity=0.442 Sum_probs=38.7
Q ss_pred HHHHHHHHcCCChHHHHHHHHHh-CCCHHHHHHHHhccCCCCC
Q 015700 360 EAIERLEAMGFDRALVLEVFFAC-NKNEELAANYLLDHMHEFE 401 (402)
Q Consensus 360 ~ai~rL~~lGf~~~~viqay~ac-dkneelAan~L~~~~~d~~ 401 (402)
+.|++|++|||+|..|++||++| ++|.|.|++|||++..|.|
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~d 53 (64)
T 1whc_A 11 TALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPD 53 (64)
T ss_dssp CHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCcc
Confidence 46999999999999999999999 7999999999999877654
No 131
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=2e-09 Score=85.96 Aligned_cols=42 Identities=24% Similarity=0.376 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCCCC
Q 015700 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216 (402)
Q Consensus 172 ~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~GIP~ 216 (402)
.+..|++|++|| |+|++|++|||+++||.++|+|||+.++.+
T Consensus 29 ~e~~i~~L~~MG---F~~~~a~~AL~~t~~nve~A~ewL~~~~~d 70 (83)
T 2dai_A 29 DEAALRQLTEMG---FPENRATKALQLNHMSVPQAMEWLIEHAED 70 (83)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHHGGGC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 578999999999 999999999999999999999999998764
No 132
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.87 E-value=1.7e-09 Score=86.57 Aligned_cols=43 Identities=26% Similarity=0.365 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhC-CHHHHHHHHHcCCCCC
Q 015700 172 LEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIPEQ 217 (402)
Q Consensus 172 ~e~~v~~i~~MG~~~f~reqV~~ALrAafn-NPdRAvEyL~~GIP~~ 217 (402)
.+..|++||+|| |+|++|++|||+++| |.++|++||++++++.
T Consensus 29 ~e~~v~~L~~MG---F~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~ 72 (84)
T 1vek_A 29 NEEIVAQLVSMG---FSQLHCQKAAINTSNAGVEEAMNWLLSHMDDP 72 (84)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 478999999999 999999999999985 9999999999997753
No 133
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.85 E-value=2.6e-09 Score=79.45 Aligned_cols=48 Identities=27% Similarity=0.433 Sum_probs=45.4
Q ss_pred cccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCC
Q 015700 351 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH 398 (402)
Q Consensus 351 ~i~~t~ee~~ai~rL~~lGf~~~~viqay~acdkneelAan~L~~~~~ 398 (402)
...|++.|.++|+.|+.|||++++++.|+-+|+.|.|.|++|||+|+.
T Consensus 12 l~~ls~se~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH~D 59 (63)
T 1wgn_A 12 LQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHSG 59 (63)
T ss_dssp HHTCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHHSC
T ss_pred HHhhCcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 356999999999999999999999999999999999999999999865
No 134
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.85 E-value=2.9e-09 Score=76.73 Aligned_cols=41 Identities=27% Similarity=0.427 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015700 356 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 396 (402)
Q Consensus 356 ~ee~~ai~rL~~lGf~~~~viqay~acdkneelAan~L~~~ 396 (402)
++..+.|++|++|||+|+.|+.|+.+|++|.+.|++|||++
T Consensus 6 ~~~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 6 SEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred ccCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 45667899999999999999999999999999999999986
No 135
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.83 E-value=2.9e-09 Score=83.08 Aligned_cols=47 Identities=13% Similarity=0.281 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015700 354 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 400 (402)
Q Consensus 354 ~t~ee~~ai~rL~~lGf~~~~viqay~acdkneelAan~L~~~~~d~ 400 (402)
.++.+.+.|++|++|||+|+.|++|+.+|++|.+.|++|||++..|.
T Consensus 25 ~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~~~d~ 71 (73)
T 1wiv_A 25 TSDIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNSGPS 71 (73)
T ss_dssp SCSSCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHSCCSS
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 34456678999999999999999999999999999999999987664
No 136
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.83 E-value=3.1e-09 Score=79.01 Aligned_cols=39 Identities=28% Similarity=0.577 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015700 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (402)
Q Consensus 172 ~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~G 213 (402)
-++.|..|++|| |.++|+.+||++.-||.|||+|||++-
T Consensus 19 e~e~V~~LvsMG---Fs~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 19 ERQCVETVVNMG---YSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHHH---CCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 467899999999 999999999999999999999999874
No 137
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.83 E-value=3.8e-09 Score=75.94 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=35.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015700 360 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 396 (402)
Q Consensus 360 ~ai~rL~~lGf~~~~viqay~acdkneelAan~L~~~ 396 (402)
+.|++|++|||+|+.||+|+..|+.|.|+|+|+|++-
T Consensus 13 ~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 13 AKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 6799999999999999999999999999999999985
No 138
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=98.81 E-value=3.9e-09 Score=76.99 Aligned_cols=38 Identities=32% Similarity=0.473 Sum_probs=36.1
Q ss_pred HHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015700 360 EAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHM 397 (402)
Q Consensus 360 ~ai~rL~~lGf-~~~~viqay~acdkneelAan~L~~~~ 397 (402)
+.|++|++||| +|+.+++|+.+|++|.+.|++|||+++
T Consensus 14 ~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~~ 52 (52)
T 2jy5_A 14 QQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSS 52 (52)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhCc
Confidence 67999999999 999999999999999999999999863
No 139
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.80 E-value=4.9e-09 Score=79.68 Aligned_cols=42 Identities=31% Similarity=0.396 Sum_probs=38.0
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCC-CHHHHHHHHhccCCCCC
Q 015700 360 EAIERLEAMGFDRALVLEVFFACNK-NEELAANYLLDHMHEFE 401 (402)
Q Consensus 360 ~ai~rL~~lGf~~~~viqay~acdk-neelAan~L~~~~~d~~ 401 (402)
+.|++|++|||+|+.|++|+++|+. |+|.|.||||++..|.|
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~d 53 (64)
T 2crn_A 11 SLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPS 53 (64)
T ss_dssp SSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSSTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcc
Confidence 3699999999999999999999975 99999999999987643
No 140
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=98.79 E-value=4.9e-09 Score=89.95 Aligned_cols=41 Identities=41% Similarity=0.608 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCCC
Q 015700 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215 (402)
Q Consensus 172 ~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~GIP 215 (402)
.+..|++|++|| |+|++|++|||+++||++||+|||+++++
T Consensus 78 ~e~~v~~L~~MG---F~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 78 PEEIVAIITSMG---FQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CHHHHHHHHHHT---SCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 578999999999 99999999999999999999999999987
No 141
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=1.8e-09 Score=81.79 Aligned_cols=43 Identities=23% Similarity=0.520 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015700 358 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 400 (402)
Q Consensus 358 e~~ai~rL~~lGf~~~~viqay~acdkneelAan~L~~~~~d~ 400 (402)
+.+.|++|++|||+|+.|++|+.+|++|.+.|++|||++..|.
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~~~d~ 51 (63)
T 2dak_A 9 PEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDL 51 (63)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCc
Confidence 3467999999999999999999999999999999999986554
No 142
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=4.5e-09 Score=74.96 Aligned_cols=38 Identities=32% Similarity=0.579 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015700 359 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 397 (402)
Q Consensus 359 ~~ai~rL~~lGf~~~~viqay~acdkneelAan~L~~~~ 397 (402)
.+.|++|++|||+++.|++|+.+|+ |.|.|++|||+++
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~h~ 47 (47)
T 2ekk_A 10 QQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLTHP 47 (47)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHcCC
Confidence 4679999999999999999999996 9999999999874
No 143
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.77 E-value=5.7e-09 Score=76.67 Aligned_cols=41 Identities=29% Similarity=0.442 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHcCCCCC-CHHHHHHHHHHhhCCHHHHHHHHHcCC
Q 015700 171 NLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGI 214 (402)
Q Consensus 171 ~~e~~v~~i~~MG~~~f-~reqV~~ALrAafnNPdRAvEyL~~GI 214 (402)
.|+..|++|++|| | +|+.+++||+++.+|.+||||||+++.
T Consensus 8 ~~~~~l~~L~~MG---F~d~~~n~~AL~~~~Gdv~~Ave~L~~~~ 49 (54)
T 2dah_A 8 HFQVQLEQLRSMG---FLNREANLQALIATGGDVDAAVEKLRQSS 49 (54)
T ss_dssp SSHHHHHHHHHHT---CCCHHHHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4788999999999 9 556689999999999999999999873
No 144
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.77 E-value=7.2e-09 Score=86.44 Aligned_cols=42 Identities=33% Similarity=0.509 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHcCCCCC-CHHHHHHHHHHhhCCHHHHHHHHHcCCC
Q 015700 171 NLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIP 215 (402)
Q Consensus 171 ~~e~~v~~i~~MG~~~f-~reqV~~ALrAafnNPdRAvEyL~~GIP 215 (402)
.|+..|++|.+|| | +|+.+++||+++++|++||||||++|.+
T Consensus 65 ~~~~qL~qL~eMG---F~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 65 QWQPQLQQLRDMG---IQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp TTHHHHHHHHTTT---CCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 4789999999999 9 8899999999999999999999999854
No 145
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.76 E-value=3.2e-08 Score=83.63 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=68.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEec
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k 76 (402)
|+|+|++.+|+.+.|.|..++++..|++..+++.| ++...+||+|.|+.|.++.|.+++++.+||+|.|++..
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~G---l~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT---CCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhC---CChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 46788888899999999999999999999999999 99999999999999999999999999999999999753
No 146
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.75 E-value=6.2e-09 Score=83.32 Aligned_cols=44 Identities=30% Similarity=0.451 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHh-CCCHHHHHHHHhccCCCCC
Q 015700 358 EREAIERLEAMGFDRALVLEVFFAC-NKNEELAANYLLDHMHEFE 401 (402)
Q Consensus 358 e~~ai~rL~~lGf~~~~viqay~ac-dkneelAan~L~~~~~d~~ 401 (402)
+.++|++|++|||+|..|++|+++| ++|++.|+||||++..|.|
T Consensus 29 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~d 73 (84)
T 1vek_A 29 NEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPD 73 (84)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCST
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCccc
Confidence 5578999999999999999996666 6899999999999877643
No 147
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.74 E-value=8.7e-09 Score=74.44 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015700 360 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 397 (402)
Q Consensus 360 ~ai~rL~~lGf~~~~viqay~acdkneelAan~L~~~~ 397 (402)
+.|++|++|||+|+.||+|+..|+.|.|+|+|+|++..
T Consensus 11 ~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef~ 48 (53)
T 2d9s_A 11 SEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREFS 48 (53)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34999999999999999999999999999999999853
No 148
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=98.74 E-value=1.3e-08 Score=74.43 Aligned_cols=38 Identities=29% Similarity=0.471 Sum_probs=35.9
Q ss_pred HHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015700 360 EAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHM 397 (402)
Q Consensus 360 ~ai~rL~~lGf-~~~~viqay~acdkneelAan~L~~~~ 397 (402)
+.|++|++||| +|+.+++|+.+|++|.+.|++|||++.
T Consensus 13 ~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 13 QQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 45999999999 999999999999999999999999875
No 149
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.69 E-value=1.7e-08 Score=80.88 Aligned_cols=38 Identities=29% Similarity=0.430 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015700 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (402)
Q Consensus 173 e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~G 213 (402)
+..|++|++|| |+|++|++||++.++|.+||+|||+..
T Consensus 22 ~~~I~qL~~MG---F~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTDMG---FPREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 78999999999 999999999999999999999999986
No 150
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.66 E-value=2.6e-08 Score=79.31 Aligned_cols=42 Identities=31% Similarity=0.378 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015700 358 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 399 (402)
Q Consensus 358 e~~ai~rL~~lGf~~~~viqay~acdkneelAan~L~~~~~d 399 (402)
..+.|++|++|||+|+.|++|+.+|+.|.+.|++|||+|..+
T Consensus 29 ~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh~~~ 70 (83)
T 1veg_A 29 SQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHHGGS 70 (83)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 346799999999999999999999999999999999998664
No 151
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=98.59 E-value=6.7e-08 Score=68.62 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=34.2
Q ss_pred HHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015700 360 EAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDH 396 (402)
Q Consensus 360 ~ai~rL~~lGf-~~~~viqay~acdkneelAan~L~~~ 396 (402)
+.|++|++||| +|+.+++|+.+|++|.+.|++|||++
T Consensus 9 ~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 9 HQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 45999999999 68889999999999999999999974
No 152
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=98.56 E-value=1.3e-08 Score=72.61 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=38.3
Q ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCC
Q 015700 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214 (402)
Q Consensus 170 ~~~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~GI 214 (402)
++-+.+|++|++|| |+|.+|++||.+.-+|.++|++||+++.
T Consensus 2 ~~e~eaI~rL~~mG---F~~~~a~~Al~a~~~n~e~A~~~Lf~~~ 43 (47)
T 1dv0_A 2 SQEKEAIERLKALG---FPESLVIQAYFACEKNENLAANFLLSQN 43 (47)
T ss_dssp -CCHHHHTTTTTTT---CCHHHHHHHHTTTTSCHHHHHHHTTSCC
T ss_pred cchHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCc
Confidence 34578999999999 9999999999999999999999999874
No 153
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.53 E-value=2.6e-07 Score=85.14 Aligned_cols=76 Identities=11% Similarity=0.116 Sum_probs=70.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~~ 80 (402)
++|+|+ .+|+.+.+.|..++++..||+..+++.| ++...+||+|.|+.|.++.|.+++++.+||+|.|++...+..
T Consensus 30 I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~G---i~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 30 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp EEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHS---SCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred EEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhC---CChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 467787 4889999999999999999999999999 999999999999999999999999999999999999876654
No 154
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.51 E-value=1e-07 Score=68.97 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015700 359 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 396 (402)
Q Consensus 359 ~~ai~rL~~lGf~~~~viqay~acdkneelAan~L~~~ 396 (402)
.+.|.+|++|||+|+.|++|+..|+.|.|+|.|+|+|-
T Consensus 8 e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 8 SSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 45799999999999999999999999999999999984
No 155
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.51 E-value=7.1e-08 Score=76.34 Aligned_cols=69 Identities=10% Similarity=0.181 Sum_probs=57.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCee---c--CCCCchhhhccCCCcEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKV---L--KDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKi---L--~D~~tL~dygI~~gs~I~v~ 73 (402)
|.|+||+.+| .+.|+|++++||.+||++|.+.++ ++.+.|.|.++-.. | .++.+|+++||+.||.|+|.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~---i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFG---FQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTC---CCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcC---CCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 6789998887 678899999999999999999999 88888777654433 3 46789999999999999874
No 156
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.49 E-value=1.5e-07 Score=73.35 Aligned_cols=41 Identities=27% Similarity=0.433 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015700 359 REAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHMHE 399 (402)
Q Consensus 359 ~~ai~rL~~lGf-~~~~viqay~acdkneelAan~L~~~~~d 399 (402)
.+.|++|++||| +|+.+++|+.+|++|.+.|++|||++...
T Consensus 30 e~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~ 71 (74)
T 1vej_A 30 QQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGASGP 71 (74)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 346999999999 79999999999999999999999997554
No 157
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.48 E-value=1.7e-07 Score=68.75 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015700 359 REAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHMHE 399 (402)
Q Consensus 359 ~~ai~rL~~lGf-~~~~viqay~acdkneelAan~L~~~~~d 399 (402)
.+.|++|++||| +++.+++|+.+|++|.+.|++|||++...
T Consensus 10 ~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~ 51 (54)
T 2dah_A 10 QVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 356999999999 55678999999999999999999987643
No 158
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.48 E-value=1.5e-07 Score=70.02 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=35.3
Q ss_pred HHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015700 360 EAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHM 397 (402)
Q Consensus 360 ~ai~rL~~lGf-~~~~viqay~acdkneelAan~L~~~~ 397 (402)
+.|++|++||| +|+.+++|+.+|+.|.+.|++|||++.
T Consensus 19 ~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 19 HQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 45999999999 699999999999999999999999874
No 159
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.47 E-value=1.9e-07 Score=85.19 Aligned_cols=75 Identities=11% Similarity=0.121 Sum_probs=68.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~ 79 (402)
|+|+|+ .+|+.+.|.|..++++..|++..+++.| +++..+||+|.|+.|.++.|.+++++.+||+|.|++...+.
T Consensus 58 InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqG---L~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG 132 (207)
T 3tix_A 58 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGG 132 (207)
T ss_dssp EEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTT---CCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred EEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhC---CCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 357776 4888999999999999999999999999 99999999999999999999999999999999999876554
No 160
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.44 E-value=2.3e-07 Score=66.71 Aligned_cols=38 Identities=34% Similarity=0.424 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015700 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (402)
Q Consensus 172 ~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~ 212 (402)
.+..|+.||+|| |+|++|++||+.+-||.|-|..+|+.
T Consensus 11 ~~~~Ia~Lm~mG---Fsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 11 VDAKIAKLMGEG---YAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp CHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 357999999999 99999999999999999999999974
No 161
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.39 E-value=2.4e-07 Score=78.64 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015700 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (402)
Q Consensus 172 ~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~G 213 (402)
+.+.|.+|++|| |++++|+.||+..-||.|||||||+++
T Consensus 76 ~~~~v~~L~eMG---F~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 76 FLQLMSKFKEMG---FELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 567899999999 999999999999999999999999986
No 162
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.39 E-value=3.4e-07 Score=63.94 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=35.7
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015700 360 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 397 (402)
Q Consensus 360 ~ai~rL~~lGf~~~~viqay~acdkneelAan~L~~~~ 397 (402)
.+|.+|+.|||+++.|++|+.-|+.|.|+|+|.|++.-
T Consensus 6 ~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef~ 43 (46)
T 2oo9_A 6 SEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREFA 43 (46)
T ss_dssp HHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 56999999999999999999999999999999999753
No 163
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.38 E-value=3.9e-07 Score=65.81 Aligned_cols=38 Identities=26% Similarity=0.401 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015700 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (402)
Q Consensus 172 ~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~ 212 (402)
.+..|..||+|| |+|++|++||+.+-||.|-|..+|+.
T Consensus 9 ~e~~I~~L~~lG---F~r~~ai~AL~~a~nnve~Aa~iL~e 46 (53)
T 2d9s_A 9 LSSEIERLMSQG---YSYQDIQKALVIAHNNIEMAKNILRE 46 (53)
T ss_dssp SHHHHHHHHHHT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 355699999999 99999999999999999999999985
No 164
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.34 E-value=6.2e-07 Score=68.43 Aligned_cols=47 Identities=28% Similarity=0.336 Sum_probs=39.8
Q ss_pred cCCHHHH--HHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015700 353 TVTPEER--EAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHMHE 399 (402)
Q Consensus 353 ~~t~ee~--~ai~rL~~lGf-~~~~viqay~acdkneelAan~L~~~~~d 399 (402)
...+|++ ..|++|++||| +|+.+++|+.+|+.|.+.|++|||++..+
T Consensus 12 ~~~pe~~y~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~~ 61 (67)
T 2dna_A 12 LQAPEVRFSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQGF 61 (67)
T ss_dssp SCCHHHHTHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSS
T ss_pred CCChHHHHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 4456663 45999999998 77788999999999999999999998655
No 165
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.32 E-value=9.3e-07 Score=61.72 Aligned_cols=41 Identities=29% Similarity=0.447 Sum_probs=38.6
Q ss_pred CchHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015700 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (402)
Q Consensus 169 g~~~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~ 212 (402)
|+.+|..|..||+|| |+|+.|++||-.+-||.+-|-+.|+.
T Consensus 1 ~~~~e~~I~~L~s~G---f~~~~~~rAL~ia~Nnie~A~nIL~e 41 (46)
T 2oo9_A 1 GSQLSSEIENLMSQG---YSYQDIQKALVIAQNNIEMAKNILRE 41 (46)
T ss_dssp CCHHHHHHHHHHHTT---BCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcC---CCHHHHHHHHHHhhccHHHHHHHHHH
Confidence 567899999999999 99999999999999999999999974
No 166
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.30 E-value=3.4e-06 Score=65.98 Aligned_cols=70 Identities=16% Similarity=0.224 Sum_probs=64.8
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-CeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~-~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
.+.+++.+...+.+.|.++.+|.+|-+.-+.+.| |+.+ ..+|.|.|..|..+.++.+|++.++|.|-||+
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~---I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVK---ISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHT---CCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcC---CCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 4567777777899999999999999999999999 9999 99999999999999999999999999999986
No 167
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.23 E-value=9.4e-07 Score=81.45 Aligned_cols=75 Identities=27% Similarity=0.282 Sum_probs=56.0
Q ss_pred hCHHHHHHHHHcHHHHHHHhcCCCCCCCCcccccccccCCccccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHH
Q 015700 310 QNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 389 (402)
Q Consensus 310 ~nP~l~q~I~~n~e~Fl~~l~~~~~~~~g~~~~~~~~~~~~~i~~t~ee~~ai~rL~~lGf~~~~viqay~acdkneelA 389 (402)
-|++..++...|++.|.+...+-... ... .-...++-.+.|++|++|||+|+.|++|+..|++|++.|
T Consensus 127 ~n~~aa~~~~~~~~~f~~~a~~~~~~--------~a~----~~~~~~~~eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A 194 (201)
T 3k9o_A 127 QDAVVANQYKQNPEMFKQTARLWAHV--------YAG----APVSSPEYTKKIENLCAMGFDRNAVIVALSSKSWDVETA 194 (201)
T ss_dssp SCHHHHHHHHHCHHHHHHHHHHHHHH--------HHC----CCCCCHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHH
T ss_pred ccHHHHHHHHHCHHHHHHHHHHHHHH--------hcc----cccccchhHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHH
Confidence 36778888888999888775432110 000 001233446789999999999999999999999999999
Q ss_pred HHHHhcc
Q 015700 390 ANYLLDH 396 (402)
Q Consensus 390 an~L~~~ 396 (402)
.++||++
T Consensus 195 ~e~L~~~ 201 (201)
T 3k9o_A 195 TELLLSN 201 (201)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9999985
No 168
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.21 E-value=1.5e-06 Score=62.97 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015700 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (402)
Q Consensus 171 ~~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~ 212 (402)
..|..|..||+|| |+|+.|++||+.+-||.+-|-.+|+.
T Consensus 6 p~e~~Ia~L~smG---fsr~da~~AL~ia~Ndv~~AtNiLlE 44 (56)
T 2juj_A 6 QLSSEIENLMSQG---YSYQDIQKALVIAQNNIEMAKNILRE 44 (56)
T ss_dssp HHHHHHHHHHTTT---CCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred CChHHHHHHHHcC---CCHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3578999999999 99999999999999999999999986
No 169
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.18 E-value=2.2e-07 Score=85.72 Aligned_cols=75 Identities=11% Similarity=0.122 Sum_probs=0.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~ 79 (402)
|+|+| +.+|+.+.|.|..++++..||+..+++.| +++..+|++|.|+.|.++.|.+++++.+||+|.|+....+.
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqG---Ls~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG 96 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (227)
T ss_dssp ------------------------------------------------------------------------------C
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhC---CCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCC
Confidence 56777 66888899999999999999999999999 99999999999999999999999999999999999876553
No 170
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.17 E-value=1.4e-06 Score=80.35 Aligned_cols=43 Identities=33% Similarity=0.470 Sum_probs=40.4
Q ss_pred cCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015700 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (402)
Q Consensus 167 ~~g~~~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~ 212 (402)
..++.+++.|++|++|| |+|++|+.||+...+|.++|+|||++
T Consensus 158 ~~~~~~eekV~~l~~MG---f~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 158 VSSPEYTKKIENLCAMG---FDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp CCCHHHHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 45678999999999999 99999999999999999999999985
No 171
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.15 E-value=9.4e-06 Score=66.48 Aligned_cols=70 Identities=10% Similarity=0.202 Sum_probs=63.7
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEE
Q 015700 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 1 MkI~VKtl~g~-~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~ 73 (402)
++|+|+..+|+ .+.+.|..+.++..|....+++.| ++....||+|.|..|..+.|..++++.+||+|.|+
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g---~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMG---LSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTT---CSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 35677777784 788999999999999999999999 88999999999999999999999999999999886
No 172
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.08 E-value=3.5e-06 Score=70.19 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccCC
Q 015700 359 REAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHMH 398 (402)
Q Consensus 359 ~~ai~rL~~lGf-~~~~viqay~acdkneelAan~L~~~~~ 398 (402)
.+.|++|++||| +|+.+|+|+.+|++|.+.|++|||+++.
T Consensus 67 ~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 67 QPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 457999999999 7799999999999999999999998753
No 173
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.06 E-value=5.7e-06 Score=68.19 Aligned_cols=44 Identities=27% Similarity=0.571 Sum_probs=41.6
Q ss_pred chHHHHHHHHHHc-CCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCCCC
Q 015700 170 SNLEATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216 (402)
Q Consensus 170 ~~~e~~v~~i~~M-G~~~f~reqV~~ALrAafnNPdRAvEyL~~GIP~ 216 (402)
++++..|+.||+| | |++++|+.||..+-++.++|++||+.|.|+
T Consensus 37 ~d~eekVk~L~EmtG---~seeeAr~AL~~~ngDl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 37 ADFEEKVKQLIDITG---KNQDECVIALHDCNGDVNRAINVLLEGNPD 81 (104)
T ss_dssp HHHHHHHHHHHHHTC---CCHHHHHHHHHHHTSCHHHHHHHHHTCSSS
T ss_pred ccHHHHHHHHHHhhC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 4678999999999 9 999999999999999999999999999874
No 174
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=97.97 E-value=6.7e-06 Score=78.46 Aligned_cols=75 Identities=25% Similarity=0.259 Sum_probs=57.8
Q ss_pred hCHHHHHHHHHcHHHHHHHhcCCCCCCCCcccccccccCCccccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHH
Q 015700 310 QNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 389 (402)
Q Consensus 310 ~nP~l~q~I~~n~e~Fl~~l~~~~~~~~g~~~~~~~~~~~~~i~~t~ee~~ai~rL~~lGf~~~~viqay~acdkneelA 389 (402)
-|++.+++...|++.|.+...+-... ... .-...++-.+.|++|++|||+|+.||+|+-.|++|++.|
T Consensus 179 ln~eaa~l~~~d~~~f~~~ar~~t~~--------yA~----~~~~~~~~~~~v~~l~~mgf~~~~~~~al~~~nWd~~~A 246 (253)
T 3e46_A 179 QDAVVANQYKQNPEMFKQTARLWAHV--------YAG----APVSSPEYTKKIENLCAAGFDRNAVIVALSSKSWDVETA 246 (253)
T ss_dssp SCHHHHHHHHHCHHHHHHHHHHHHHH--------HHC----CSCCCHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHH
T ss_pred hhHHHHHHHHHCHHHHHHHHHHHHHH--------hcc----cccCcchHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHH
Confidence 47888999999999998886432110 000 011234556789999999999999999999999999999
Q ss_pred HHHHhcc
Q 015700 390 ANYLLDH 396 (402)
Q Consensus 390 an~L~~~ 396 (402)
.++||++
T Consensus 247 ~e~L~~~ 253 (253)
T 3e46_A 247 TELLLSN 253 (253)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9999974
No 175
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.94 E-value=1.4e-05 Score=65.82 Aligned_cols=42 Identities=21% Similarity=0.318 Sum_probs=38.2
Q ss_pred HHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015700 358 EREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDHMHE 399 (402)
Q Consensus 358 e~~ai~rL~~l-Gf~~~~viqay~acdkneelAan~L~~~~~d 399 (402)
-.+.|++|++| ||+++.|+.|+..|++|++.|.++||+...|
T Consensus 39 ~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 39 FEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPD 81 (104)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 34669999999 9999999999999999999999999987643
No 176
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.86 E-value=6.8e-05 Score=60.90 Aligned_cols=72 Identities=11% Similarity=0.197 Sum_probs=66.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEec
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k 76 (402)
+.|+|+ .+|..+.+.|..++....|.+..+.+.| +.+...|++|.|..+.++.|-.++++.++|+|.+++.+
T Consensus 22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~g---v~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLG---VSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHT---SCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcC---CChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 357788 4788899999999999999999999999 88999999999999999999999999999999999864
No 177
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.83 E-value=3.4e-05 Score=71.41 Aligned_cols=73 Identities=11% Similarity=0.141 Sum_probs=67.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCC
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k 78 (402)
.|+|+. +++.+.+.|..++++..||+..+++.| ++..++||+|.|+.+.++.+..++.+.++++|.++.....
T Consensus 23 ~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g---~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp EEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred EEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhC---CChheEEEEECCEeccCCCChHHhhhcccccchhhccccc
Confidence 566776 677888999999999999999999999 9999999999999999999999999999999999987655
No 178
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.76 E-value=2.4e-05 Score=57.07 Aligned_cols=42 Identities=24% Similarity=0.342 Sum_probs=38.7
Q ss_pred CchHHHHHHHHHHcCCCCC-CHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015700 169 GSNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 213 (402)
Q Consensus 169 g~~~e~~v~~i~~MG~~~f-~reqV~~ALrAafnNPdRAvEyL~~G 213 (402)
-+.|...+.+|.+|| | +++..++|||...+|.+|||+.|+.+
T Consensus 6 ee~~a~~L~~L~eMG---F~D~~~N~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 6 SGQTAALMAHLFEMG---FCDRQLNLRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp CTTHHHHHHHHHHHT---CCCHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 355778999999999 9 99999999999999999999999975
No 179
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.76 E-value=1.8e-05 Score=57.68 Aligned_cols=46 Identities=28% Similarity=0.256 Sum_probs=39.7
Q ss_pred CHHHHHH--HHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015700 355 TPEEREA--IERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHMHEF 400 (402)
Q Consensus 355 t~ee~~a--i~rL~~lGf-~~~~viqay~acdkneelAan~L~~~~~d~ 400 (402)
.+||+.+ +++|.+||| |++..++++..|+.|.+.|++.|++....+
T Consensus 4 ~~ee~~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~~ 52 (54)
T 2cp8_A 4 GSSGQTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLSGPS 52 (54)
T ss_dssp SSCTTHHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHSSSC
T ss_pred CHHHhhHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhccCCC
Confidence 4556665 889999999 999999999999999999999999865443
No 180
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.74 E-value=8.3e-05 Score=60.45 Aligned_cols=69 Identities=17% Similarity=0.127 Sum_probs=51.6
Q ss_pred EEEEeC-CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecC--CCCchhhhcc-CCCcEEEEEE
Q 015700 3 VFVKTL-KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLK--DVTTLEENKV-AENSFVVVML 74 (402)
Q Consensus 3 I~VKtl-~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~--D~~tL~dygI-~~gs~I~v~v 74 (402)
|+|=.+ ..+.++|.|.+++||..||++|++++| |++++|+|||.||.|. ..+.-..|-- ...+-|+|+-
T Consensus 15 vHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTg---Ip~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 15 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTK---IISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp EEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHC---CCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred EEEEEcccceEEEEEeccchHHHHHHHHHHHHhC---CCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence 344444 466788999999999999999999999 9999999999998764 4455555533 3344555543
No 181
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.74 E-value=4.9e-05 Score=60.18 Aligned_cols=71 Identities=13% Similarity=0.213 Sum_probs=59.2
Q ss_pred EEEEEe--CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC--CCeEEEeCCeecCCCCchhhhccCCCcEEEE
Q 015700 2 KVFVKT--LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA--SQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72 (402)
Q Consensus 2 kI~VKt--l~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~--~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v 72 (402)
+|+|.. ..++.|.+.|+...||+.|+..+.+.++-+..+. ...|+.-+|.+|.++..|.+|+|.+||.|.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 566664 5889999999999999999999999998431111 2457888999999999999999999999876
No 182
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.73 E-value=1.5e-05 Score=79.85 Aligned_cols=42 Identities=24% Similarity=0.390 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015700 358 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 399 (402)
Q Consensus 358 e~~ai~rL~~lGf~~~~viqay~acdkneelAan~L~~~~~d 399 (402)
..++|.+|++|||+|+.|+.|+.+|+.|.+.|++|||++..|
T Consensus 168 ~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~gip~ 209 (368)
T 1oqy_A 168 YETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPG 209 (368)
T ss_dssp HHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTTSSTT
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 446799999999999999999999999999999999987654
No 183
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=97.72 E-value=2.6e-05 Score=70.01 Aligned_cols=42 Identities=24% Similarity=0.453 Sum_probs=38.9
Q ss_pred CchHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015700 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (402)
Q Consensus 169 g~~~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~G 213 (402)
.++.+++|++|++|| |+|++|++|+.++.+|.+.|++||+.+
T Consensus 127 tpee~eaI~rL~~mG---F~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 127 TPEDDQAISRLCELG---FERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp CHHHHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred CccHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 355678899999999 999999999999999999999999875
No 184
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.72 E-value=6.5e-05 Score=64.44 Aligned_cols=69 Identities=25% Similarity=0.243 Sum_probs=57.1
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-------------------------------------Ce
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-------------------------------------QQ 44 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~-------------------------------------~Q 44 (402)
.|+|+.++|...++.|+.+.||.+++..|+.+.| |+.. ++
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kig---I~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~ 89 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIG---ITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQ 89 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHT---CCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhC---CCCcccccccccccccccccCchhhccccccccchhHHHHHHH
Confidence 3899999999999999999999999999999999 5533 44
Q ss_pred EEEe--CCeecCCCCchhhhccCCCcEEEEE
Q 015700 45 MLIH--QGKVLKDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 45 rLIy--~GKiL~D~~tL~dygI~~gs~I~v~ 73 (402)
||-. .+..|+++++|.++||.++++|.|-
T Consensus 90 kL~~dd~~~WLD~srtL~EQGI~e~~tllLR 120 (128)
T 2kc2_A 90 KLHTDDELNWLDHGRTLREQGVEEHETLLLR 120 (128)
T ss_dssp SCCCSSSEEEECSSSCHHHHTCCTTSEEEEE
T ss_pred HhcccCCCCcccCCCcHHHcCCCCCCEEEEE
Confidence 4422 2356788999999999999997654
No 185
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.62 E-value=7.9e-06 Score=81.38 Aligned_cols=74 Identities=11% Similarity=0.150 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k 78 (402)
+.|+|++ +|+.+.+.|..++++..|++..+++.| ++.+.+|++|.|+.|.++.|.+++++++||+|.|+....+
T Consensus 22 I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G---~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g 95 (360)
T 3ix6_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (360)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhC---CCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCc
Confidence 3566776 677888999999999999999999999 8999999999999999999999999999999999987544
No 186
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.54 E-value=0.00033 Score=56.35 Aligned_cols=74 Identities=18% Similarity=0.149 Sum_probs=68.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecC
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~ 77 (402)
|.|+|-..+++.++|.|.++.++.++-+....++| +.+++-.|.|++|.|+-+..++-.||-+|..+.++.+.+
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~g---l~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~ 83 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQD---FNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSR 83 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTT---CCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSS
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhC---CChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccC
Confidence 67899999999999999999999999999999999 888888999999999889999999999999999986543
No 187
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.38 E-value=2.5e-05 Score=78.55 Aligned_cols=74 Identities=9% Similarity=0.116 Sum_probs=0.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEecCCC
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k~k~ 79 (402)
.|+|+. +++.+.|.|..++++..||+..+++.| ++...+|++|.|+.|.++.|.+++++.+|++|.+++.....
T Consensus 32 ~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g---~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg 105 (389)
T 4da1_A 32 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGG 105 (389)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEec-CCcEEEEEECCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccc
Confidence 456665 667788999999999999999999999 99999999999999999999999999999999999876553
No 188
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.36 E-value=0.0017 Score=53.87 Aligned_cols=71 Identities=13% Similarity=0.209 Sum_probs=59.9
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC--C-CCchhhhccCCCcEEEEEEe
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLK--D-VTTLEENKVAENSFVVVMLT 75 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLI--y~GKiL~--D-~~tL~dygI~~gs~I~v~v~ 75 (402)
+|.||..+|+.+.-.+..++||.+|...|....+ .+.....|+ |-.|.|. | +++|+++|+.+..+|+|...
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~---~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVG---NTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHT---TSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccC---CCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 6889999999999999999999999999999877 555677776 6788886 4 68999999999877766543
No 189
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.33 E-value=0.00082 Score=52.98 Aligned_cols=69 Identities=17% Similarity=0.235 Sum_probs=58.6
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC---CCCchhhhccCCCcEEEEEE
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLK---DVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLI--y~GKiL~---D~~tL~dygI~~gs~I~v~v 74 (402)
+|.||..+|+.+.-.+..++||.+|...|.. .+ +.....+|+ |-.|.|. .+++|+++|+.++.+|+|-.
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~---~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KG---FPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TT---CCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cC---CCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 6889999999888889999999999999987 56 567788888 6688884 36899999999988887753
No 190
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.33 E-value=0.00027 Score=51.09 Aligned_cols=42 Identities=29% Similarity=0.414 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhC-CHHHHHHHHHc-CCCC
Q 015700 172 LEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYS-GIPE 216 (402)
Q Consensus 172 ~e~~v~~i~~MG~~~f~reqV~~ALrAafn-NPdRAvEyL~~-GIP~ 216 (402)
.-++++.|++|| |+++-|++||+..-| ..+-|+|||.- +.|+
T Consensus 9 n~qmlq~L~eMG---Fd~erae~Alk~Tg~~Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 9 NRQMLQELVNAG---CDQEMAGRALKQTGSRSIEAALEYISKMSGPS 52 (54)
T ss_dssp CHHHHHHHHHHH---CCHHHHHHHHHHHTSCCHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHhCcccHHHHHHHHHHhcCCC
Confidence 457899999999 999999999999877 79999999975 4443
No 191
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=97.08 E-value=0.00053 Score=65.32 Aligned_cols=44 Identities=30% Similarity=0.404 Sum_probs=40.8
Q ss_pred ccCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015700 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (402)
Q Consensus 166 l~~g~~~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~ 212 (402)
-+.+++|++.|++|++|| |+|++|+.||+..-.|-++|+|||+.
T Consensus 209 ~~~~~~~~~~v~~l~~mg---f~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 209 PVSSPEYTKKIENLCAAG---FDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp SCCCHHHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ccCcchHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 345778999999999999 99999999999999999999999985
No 192
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.68 E-value=0.0041 Score=52.80 Aligned_cols=69 Identities=22% Similarity=0.344 Sum_probs=58.9
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeec--CC-CCchhhhccCCCcEEEEEE
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVL--KD-VTTLEENKVAENSFVVVML 74 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLI--y~GKiL--~D-~~tL~dygI~~gs~I~v~v 74 (402)
+|.||..+|+.+.-.+..++||.+|...|... + ++....+|+ |-.|.| .| +++|.++|+.+...|+|..
T Consensus 45 ~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~---~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-G---YPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-H---CCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C---CCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 68899999999999999999999999999876 6 666778887 678999 44 6899999999988877653
No 193
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=96.67 E-value=0.0021 Score=70.98 Aligned_cols=40 Identities=25% Similarity=0.543 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015700 360 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 399 (402)
Q Consensus 360 ~ai~rL~~lGf~~~~viqay~acdkneelAan~L~~~~~d 399 (402)
+.|..|.+|||++.++++|+.+|+.|.|.|++|||++..|
T Consensus 722 e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~~d~ 761 (854)
T 3ihp_A 722 DCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDD 761 (854)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhcCccc
Confidence 4588899999999999999999999999999999997654
No 194
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.37 E-value=0.025 Score=46.75 Aligned_cols=69 Identities=16% Similarity=0.142 Sum_probs=57.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC-C-CCchhhhccCCCcEEEEEE
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLK-D-VTTLEENKVAENSFVVVML 74 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLI--y~GKiL~-D-~~tL~dygI~~gs~I~v~v 74 (402)
+|.||..+|+.+.-.+..++||.+|...|... + +.....+|+ |-.|.|. | +++|+++||.+..+|+|..
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~---~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-G---YHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-T---CCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C---CCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 68899999998888899999999999999865 4 445677886 6788886 3 6899999999988776653
No 195
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=96.32 E-value=0.00066 Score=63.17 Aligned_cols=73 Identities=19% Similarity=0.290 Sum_probs=16.6
Q ss_pred CHHHHHHHHHcHHHHHHHhcCCCCCCCCcccccccccCCccccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHH
Q 015700 311 NPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 390 (402)
Q Consensus 311 nP~l~q~I~~n~e~Fl~~l~~~~~~~~g~~~~~~~~~~~~~i~~t~ee~~ai~rL~~lGf~~~~viqay~acdkneelAa 390 (402)
|++..++...|++.|.+...+-...-.. . .. ..+-.+.|+||++|||+++.++.|+..|++|++.|.
T Consensus 143 n~eaa~~~~~d~~~f~~~ar~~t~~ya~--------~--~~---~~~~~~~v~~~~~mgf~~~~~~~al~~~~~~~~~~~ 209 (216)
T 2pwq_A 143 DAEVAKMYKENHALFVKTASVWTKTFAT--------G--PK---EEPREVIIKKITEMGFSEDQAKNALIKANWNETLAL 209 (216)
T ss_dssp CHHHHHHHHHCHHHHHHHHHHHHHHHSC--------C--C----------------------------------------
T ss_pred cHHHHHHHHHCHHHHHHHHHHHHHHhcC--------C--Cc---ccchhhHHHHHHHcCCCHHHHHHHHHHcCCchHHHH
Confidence 6677788888888888775332110000 0 00 012246799999999999999999999999999999
Q ss_pred HHHhcc
Q 015700 391 NYLLDH 396 (402)
Q Consensus 391 n~L~~~ 396 (402)
+.||+.
T Consensus 210 ~~l~~~ 215 (216)
T 2pwq_A 210 NTLLEN 215 (216)
T ss_dssp ------
T ss_pred HHHhcC
Confidence 999974
No 196
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=96.28 E-value=0.015 Score=49.43 Aligned_cols=65 Identities=18% Similarity=0.292 Sum_probs=53.8
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecCC-CCchhhhccCCCc
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLKD-VTTLEENKVAENS 68 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLI--y~GKiL~D-~~tL~dygI~~gs 68 (402)
+|.||..+|+.+.-.+..++||.+|...|...... +......|+ |-.|.|.| +++|+++|+.+..
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~--~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psa 121 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPA--MAATSFVLMTTFPNKELADENQTLKEANLLNAV 121 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSG--GGTSCEEEEETTTTEECCSTTCBHHHHTCSSCE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcC--CCCCCeEEecCCCCCCCCCCCCcHHHCCCcCce
Confidence 58999999999999999999999999999886421 445667776 67899976 6899999999843
No 197
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=95.99 E-value=0.0091 Score=44.25 Aligned_cols=41 Identities=27% Similarity=0.337 Sum_probs=35.3
Q ss_pred HHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015700 360 EAIERLEAM--GFDRALVLEVFFACNKNEELAANYLLDHMHEF 400 (402)
Q Consensus 360 ~ai~rL~~l--Gf~~~~viqay~acdkneelAan~L~~~~~d~ 400 (402)
+.|+.|++| ++++..+..+|.+|++|.+.|.|.||+-.++.
T Consensus 11 e~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~ 53 (59)
T 1wgl_A 11 EDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP 53 (59)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCC
Confidence 458889999 55899999999999999999999999865543
No 198
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.70 E-value=0.057 Score=42.75 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=59.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe---CCeecCCCCchhhhccCCCcEEEEEEecC
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH---QGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy---~GKiL~D~~tL~dygI~~gs~I~v~v~k~ 77 (402)
++.|.....++..+.|++..++.+|--.|.+++. +.++.-.|.. .+..|+-+++|.||||++ ++.+-.++
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kce---fdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d~~~ 84 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCE---FDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMDVNR 84 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTT---CCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEECCC
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhccc---CChhhEEEecCCCCCcccchhcchhhhhhhh---hheecccc
Confidence 5777877888899999999999999999999988 7788887764 566788899999999998 77776554
No 199
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=95.29 E-value=0.016 Score=42.84 Aligned_cols=39 Identities=28% Similarity=0.356 Sum_probs=36.7
Q ss_pred HHHHHHHHHHc--CCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015700 172 LEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (402)
Q Consensus 172 ~e~~v~~i~~M--G~~~f~reqV~~ALrAafnNPdRAvEyL~~G 213 (402)
.|+.|..|.+| . ++++.|+..|++.-+|.|+|++.|+.-
T Consensus 9 ~ee~l~~L~emFP~---ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 9 SEEDLKAIQDMFPN---MDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp CHHHHHHHHHHCSS---SCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred CHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 58899999999 6 899999999999999999999999975
No 200
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=95.23 E-value=0.014 Score=54.08 Aligned_cols=77 Identities=13% Similarity=0.140 Sum_probs=48.6
Q ss_pred hCHHHHHHHHHcHHHHHHHhcCCCCCC-CCcccccccccCCccccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHH
Q 015700 310 QNPHLMRLIQEHQTDFLRLINEPVEGG-EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 388 (402)
Q Consensus 310 ~nP~l~q~I~~n~e~Fl~~l~~~~~~~-~g~~~~~~~~~~~~~i~~t~ee~~ai~rL~~lGf~~~~viqay~acdkneel 388 (402)
.|++..++...|++.|.+...+-...- .+...+..+.. ....+-..+.+.|+||++|||+++.|++|+.-|+.++..
T Consensus 122 ln~eaa~~~~~d~~~f~~~ar~~t~~yA~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~mg~~~~~~~~al~~~~~~~~~ 199 (215)
T 1tte_A 122 QDAEVAQHYLRDRESFNKTAALWTRLYASETSNGQKGNV--EESDLYGIDHDLIDEFESQGFEKDKIVEVLRRLGVKSLD 199 (215)
T ss_dssp SCHHHHHHHHHCHHHHHHHHHHHHHHSSCCCSCCSSCCC--SCSSCCCCSHHHHHHHHHHTCCHHHHHHHHHHSCCSSCC
T ss_pred cCHHHHHHHHHCHHHHHHHHHHHHHHhccCCCcccccch--hhhhhccccHHHHHHHHHcCCCHHHHHHHHHHcCCCccc
Confidence 467777788888888877643211000 00000000000 123445567789999999999999999999999998843
No 201
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=95.11 E-value=0.0037 Score=58.11 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCC
Q 015700 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214 (402)
Q Consensus 171 ~~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~GI 214 (402)
+++..|+++++|| |+|++|++||+..-.+-++|+|.|+.|+
T Consensus 176 ~~~~~v~~~~~mg---f~~~~~~~al~~~~~~~~~~~~~l~~~~ 216 (216)
T 2pwq_A 176 PREVIIKKITEMG---FSEDQAKNALIKANWNETLALNTLLENS 216 (216)
T ss_dssp --------------------------------------------
T ss_pred chhhHHHHHHHcC---CCHHHHHHHHHHcCCchHHHHHHHhcCC
Confidence 4578999999999 9999999999999999999999999884
No 202
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=95.06 E-value=0.063 Score=41.29 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=47.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~ 73 (402)
|+|+||........+++....||.+|-++ .| ++++..-+..+|+++..+. +.+||.|.++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lg---l~~~~VvV~vNG~~v~~d~------~l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VD---LSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TC---CCSSCCCEECCCCCCCTTS------SSCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cC---CCcceEEEEECCEECCHHH------CCCCCEEEEE
Confidence 89999977555566899999999998764 67 8888887789999987665 3358888776
No 203
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=94.82 E-value=0.16 Score=42.27 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=45.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC------CCeEEEe----CCeecCCC-------------CchhhhccCC
Q 015700 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA------SQQMLIH----QGKVLKDV-------------TTLEENKVAE 66 (402)
Q Consensus 10 g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~------~~QrLIy----~GKiL~D~-------------~tL~dygI~~ 66 (402)
+..+.+.|-..+||.++|+||-...-+. +|. +.+.|-| .|++|.|. .||..|+|.+
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~-~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 101 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRG-QPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD 101 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC----------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcC-CccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence 4457788889999999999999876432 443 3455654 35777662 3799999999
Q ss_pred CcEEEEEE
Q 015700 67 NSFVVVML 74 (402)
Q Consensus 67 gs~I~v~v 74 (402)
|.+|.++-
T Consensus 102 gatl~l~~ 109 (111)
T 4e71_A 102 GATLILSK 109 (111)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEe
Confidence 99998764
No 204
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.54 E-value=0.065 Score=40.64 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=39.4
Q ss_pred cCCchHHHHHHHHHHc--CCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015700 167 VAGSNLEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (402)
Q Consensus 167 ~~g~~~e~~v~~i~~M--G~~~f~reqV~~ALrAafnNPdRAvEyL~~G 213 (402)
+.+.++++.|..|.+| - ++++-|+..|++.-+|.|+||+-|+.-
T Consensus 13 ~~~~~~~~~v~~L~~MFP~---lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 13 VRRLEFNQAMDDFKTMFPN---MDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCCCCSHHHHHHHHHHCSS---SCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3456789999999999 4 799999999999999999999999863
No 205
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=94.15 E-value=0.14 Score=39.18 Aligned_cols=50 Identities=14% Similarity=0.341 Sum_probs=43.2
Q ss_pred cCCchHHHHHHHHHHc--CCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC-CCCCCC
Q 015700 167 VAGSNLEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTA 219 (402)
Q Consensus 167 ~~g~~~e~~v~~i~~M--G~~~f~reqV~~ALrAafnNPdRAvEyL~~G-IP~~~~ 219 (402)
+.+.+.+..|.+|.++ - |....|.++|..--+|+++.|.+|+.| +|.++.
T Consensus 8 ~~~~~l~s~I~qV~DLfPd---LG~gfi~~~L~~y~~nvE~vin~LLE~~LPp~L~ 60 (71)
T 2di0_A 8 MCGVELDSLISQVKDLLPD---LGEGFILACLEYYHYDPEQVINNILEERLAPTLS 60 (71)
T ss_dssp CSSHHHHHHHHHHHHHCCS---SCHHHHHHHHHHTTTCHHHHHHHHHTTCCCTTTT
T ss_pred CcHHHHHHHHHHHHHHccc---CCHHHHHHHHHHhCCCHHHHHHHHHccCCCHHHH
Confidence 4677899999999997 4 678899999999778999999999998 777653
No 206
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=94.14 E-value=0.065 Score=38.16 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=35.9
Q ss_pred HHHHHHHHHHc--CCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015700 172 LEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (402)
Q Consensus 172 ~e~~v~~i~~M--G~~~f~reqV~~ALrAafnNPdRAvEyL~~G 213 (402)
-+..|+.|+|| . -++++|.++|+++-+|-|||+..|+++
T Consensus 4 ~e~~v~~L~EMFP~---~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 4 HESKLSILMDMFPA---ISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHHCSS---SCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 46889999999 4 699999999999999999999999987
No 207
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=93.89 E-value=0.2 Score=43.10 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=47.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC------CCeEEEe----CCe-ecCCC-------------CchhhhccCC
Q 015700 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPA------SQQMLIH----QGK-VLKDV-------------TTLEENKVAE 66 (402)
Q Consensus 11 ~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~------~~QrLIy----~GK-iL~D~-------------~tL~dygI~~ 66 (402)
..+.+.|-..+||.++|+||-+..-++ +|. ++.-|-+ .|+ +|.|. .||..|+|.+
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~-~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKG-VPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTT-SCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcC-CccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 457888889999999999999887654 543 2344444 344 47663 2899999999
Q ss_pred CcEEEEEEec
Q 015700 67 NSFVVVMLTK 76 (402)
Q Consensus 67 gs~I~v~v~k 76 (402)
|.+|.++-+.
T Consensus 120 ga~l~l~~~~ 129 (138)
T 2r2o_A 120 GATVALVPCL 129 (138)
T ss_dssp TCEEEEEEC-
T ss_pred CCEEEEEECC
Confidence 9999887553
No 208
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=93.83 E-value=0.32 Score=36.57 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=45.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
|+|+|.... ....+++....||.+|.+.+ + ++.....+..+|+++..+. -|++||.|.++-
T Consensus 5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~---~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----E---IPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR 65 (70)
T ss_dssp EEEEEEETT-EEEEEEESSCCBHHHHHHHT----T---CCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE
T ss_pred EEEEEeCcc-CceeEECCCCCcHHHHHHHh----C---CCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe
Confidence 567766433 23456778788999999875 4 5566777889999997655 588999998873
No 209
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=93.74 E-value=0.45 Score=46.77 Aligned_cols=93 Identities=16% Similarity=0.296 Sum_probs=52.7
Q ss_pred HHHHHHHhCccchHHHHHHHHhhCHHHHHHHHHcHHHHHHHhcCCCCCCCCcccccccccCCccccCCHHHHHH-HHHH-
Q 015700 288 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREA-IERL- 365 (402)
Q Consensus 288 ~lRq~vq~nP~lL~~~lqqi~~~nP~l~q~I~~n~e~Fl~~l~~~~~~~~g~~~~~~~~~~~~~i~~t~ee~~a-i~rL- 365 (402)
.+..+|..+|.+|.-=+.. |..+= +|++-|+..... ....-...|..+.++.+.... +.-|
T Consensus 94 ~V~kiL~k~P~lL~~s~e~-----------L~~~l-~fL~~lGl~~~~-----i~~ll~~~P~lL~~s~e~i~~~v~~L~ 156 (335)
T 4fp9_B 94 PVCVVLKKSPQLLKLPIMQ-----------MRKRS-SYLQKLGLGEGK-----LKRVLYCCPEIFTMRQQDINDTVRLLK 156 (335)
T ss_dssp HHHHHHHHCGGGGGSCHHH-----------HHHHH-HHHHHTTCTTTT-----HHHHHHHCGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhChhhccCCHHH-----------HHHHH-HHHHHcCCCHHH-----HHHHHHhCchhhccChHHHHHHHHHHH
Confidence 4567888899888622222 33332 355555443211 111111224567788877655 4445
Q ss_pred HHcCCChHHHHHHHHHhC-------CCHHHHHHHHhccC
Q 015700 366 EAMGFDRALVLEVFFACN-------KNEELAANYLLDHM 397 (402)
Q Consensus 366 ~~lGf~~~~viqay~acd-------kneelAan~L~~~~ 397 (402)
..|||++++|..+...|= .+-+--.+||...+
T Consensus 157 ~~lGfS~~ev~~mv~r~P~lL~~S~e~L~~K~efLv~~M 195 (335)
T 4fp9_B 157 EKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRM 195 (335)
T ss_dssp HTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTT
T ss_pred HHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHHh
Confidence 478999999999988873 23344445555543
No 210
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=93.38 E-value=0.41 Score=44.47 Aligned_cols=62 Identities=13% Similarity=0.232 Sum_probs=50.9
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-CeEEE--eC---CeecCC-CCchhhhccCCCcEEEEEEecC
Q 015700 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLI--HQ---GKVLKD-VTTLEENKVAENSFVVVMLTKS 77 (402)
Q Consensus 13 ~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~-~QrLI--y~---GKiL~D-~~tL~dygI~~gs~I~v~v~k~ 77 (402)
+++.++..+||.+|++++...++ ++.+ ..||- |. ...|.| +.+|.+++|.++..|+|=++.+
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~---i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~ 222 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFN---IPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNE 222 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTT---CCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCT
T ss_pred EEEEecccCcHHHHHHHHHHHhC---CCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecC
Confidence 55778999999999999999999 8887 68884 32 345776 5899999999999999888753
No 211
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=93.27 E-value=0.33 Score=44.62 Aligned_cols=61 Identities=13% Similarity=0.255 Sum_probs=50.5
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-CeEEE--e-CC--eecCC-CCchhhhccCCCcEEEEEEec
Q 015700 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLI--H-QG--KVLKD-VTTLEENKVAENSFVVVMLTK 76 (402)
Q Consensus 13 ~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~-~QrLI--y-~G--KiL~D-~~tL~dygI~~gs~I~v~v~k 76 (402)
+++.++..+||.+|++++...++ ++.+ ..||- | .+ ..|.| +++|.+++|.++..|+|=++.
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~---i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFS---IPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTT---CCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred eEEEEcccchHHHHHHHHHHHhC---CCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 56788999999999999999999 8886 67873 4 22 34666 579999999999999988874
No 212
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=93.14 E-value=0.071 Score=58.78 Aligned_cols=40 Identities=40% Similarity=0.684 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015700 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (402)
Q Consensus 171 ~~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~G 213 (402)
..++.|..|++|| |++++.++||++.-||.+|||+||.+.
T Consensus 719 ~~~e~i~~l~~mG---f~~~~a~~aL~~t~~~~eraidwlfs~ 758 (854)
T 3ihp_A 719 PPEDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFSH 758 (854)
T ss_dssp CCHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcC---CCHHHHHHHHHhhcCcHHHHHHhhhcC
Confidence 3578899999999 999999999999999999999999985
No 213
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.97 E-value=0.14 Score=38.77 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=33.1
Q ss_pred HHHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015700 359 REAIERLEAM--GFDRALVLEVFFACNKNEELAANYLLDH 396 (402)
Q Consensus 359 ~~ai~rL~~l--Gf~~~~viqay~acdkneelAan~L~~~ 396 (402)
.++++.|++| .+++..+..++.+|++|.+.|.+-||+-
T Consensus 19 ~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 19 NQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4569999999 3478999999999999999999999973
No 214
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=92.96 E-value=0.55 Score=37.51 Aligned_cols=68 Identities=21% Similarity=0.291 Sum_probs=47.8
Q ss_pred CEEEEEeCC------C-cEEEEEeCCCCcHHHHHHHHHHHhCC--CCC------CCCCeEEEeCCeecCCCCchhhhccC
Q 015700 1 MKVFVKTLK------G-THFEIEVKPEDKVSDVKKNIETVQGS--DVY------PASQQMLIHQGKVLKDVTTLEENKVA 65 (402)
Q Consensus 1 MkI~VKtl~------g-~~~~ieV~~~~TV~~LK~kI~~~~g~--~~i------p~~~QrLIy~GKiL~D~~tL~dygI~ 65 (402)
|+|+||.+. | ....+++....||.+|.+.+...+.. ..+ ......+..+|+.... ++-|+
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 678888663 3 46778888889999999999877421 000 0134567788887753 56789
Q ss_pred CCcEEEEE
Q 015700 66 ENSFVVVM 73 (402)
Q Consensus 66 ~gs~I~v~ 73 (402)
+||.|.++
T Consensus 85 dGDeV~i~ 92 (98)
T 1vjk_A 85 DGDVVGVF 92 (98)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 99998886
No 215
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.67 E-value=0.28 Score=36.97 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=42.4
Q ss_pred cccCCHHHHHHHHHHHHc-C-CChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015700 351 AVTVTPEEREAIERLEAM-G-FDRALVLEVFFACNKNEELAANYLLDHM 397 (402)
Q Consensus 351 ~i~~t~ee~~ai~rL~~l-G-f~~~~viqay~acdkneelAan~L~~~~ 397 (402)
.-.||.+..+.|.+.+++ | -+...+++.+.+|++|-+.|.+..|++.
T Consensus 11 ~~~Ls~~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~ 59 (67)
T 2dam_A 11 ERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQ 59 (67)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSS
T ss_pred hhhcChhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 347899999999999998 8 6899999999999999999999999863
No 216
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.24 E-value=0.31 Score=36.13 Aligned_cols=47 Identities=21% Similarity=0.352 Sum_probs=42.1
Q ss_pred cccCCHHHHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015700 351 AVTVTPEEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDHM 397 (402)
Q Consensus 351 ~i~~t~ee~~ai~rL~~l-Gf~~~~viqay~acdkneelAan~L~~~~ 397 (402)
..+++....+.|.+.+++ |-++..+++-+.+|++|-+.|.+..|++.
T Consensus 8 ~~~~s~~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~ 55 (62)
T 2dal_A 8 GSAASSALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGG 55 (62)
T ss_dssp CCSSCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSC
T ss_pred hhhcCccHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 457888888999999997 89999999999999999999999999864
No 217
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=92.04 E-value=0.14 Score=37.01 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhC-CCHHHHHHHHhccCC
Q 015700 358 EREAIERLEAMGFDRALVLEVFFACN-KNEELAANYLLDHMH 398 (402)
Q Consensus 358 e~~ai~rL~~lGf~~~~viqay~acd-kneelAan~L~~~~~ 398 (402)
-+.-++.|.+||||++.|..|.-..+ |..+-|-+||+.-.+
T Consensus 9 n~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k~~~ 50 (54)
T 2cos_A 9 NRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISKMSG 50 (54)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence 34558999999999999999987765 589999999986443
No 218
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=91.95 E-value=0.45 Score=39.87 Aligned_cols=65 Identities=25% Similarity=0.360 Sum_probs=45.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC------CeEEEe-CC---e-ecCCC-------------CchhhhccCC
Q 015700 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPAS------QQMLIH-QG---K-VLKDV-------------TTLEENKVAE 66 (402)
Q Consensus 11 ~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~------~QrLIy-~G---K-iL~D~-------------~tL~dygI~~ 66 (402)
..+.+.|-..+||.++|+||-...-+. +|.+ .+.|-| .| + +|.|. .||..|+|.+
T Consensus 27 ~~i~VkVLdCDTItQvKeKiLd~vyk~-~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 27 PEVPVKILNCDTITQVKEKILDAIFKN-VPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CceEeeeecCCchHHHHHHHHHHHhcC-CCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 347788888999999999998776433 4433 445544 22 3 35541 3699999999
Q ss_pred CcEEEEEEec
Q 015700 67 NSFVVVMLTK 76 (402)
Q Consensus 67 gs~I~v~v~k 76 (402)
|.+|.++.+.
T Consensus 106 gatl~l~~~~ 115 (117)
T 4e74_A 106 GSVVALVSKQ 115 (117)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999987543
No 219
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=91.95 E-value=0.7 Score=39.20 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=47.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC------CCeEEEe----CCe-ecCCC-------------CchhhhccC
Q 015700 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA------SQQMLIH----QGK-VLKDV-------------TTLEENKVA 65 (402)
Q Consensus 10 g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~------~~QrLIy----~GK-iL~D~-------------~tL~dygI~ 65 (402)
+..+.+.|-..+||.++|+||-+..-+. +|. +.+.|-| .|+ +|.|. .||..|+|.
T Consensus 16 ~~~i~VkVLdCDTItQvKeKiLd~vyk~-~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 16 MDSLSVRAMDTDTLTQVKEKILEAFCKN-VPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHSTT-SCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCceeeeeeccCchhhhhHHHHHHHhcc-CCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 4557888889999999999999876433 443 4556655 234 36652 368999999
Q ss_pred CCcEEEEEEe
Q 015700 66 ENSFVVVMLT 75 (402)
Q Consensus 66 ~gs~I~v~v~ 75 (402)
+|.+|.+..+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999988754
No 220
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=91.75 E-value=0.44 Score=36.03 Aligned_cols=65 Identities=6% Similarity=0.183 Sum_probs=44.8
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCC--CCeEEEeCCeecCCCCchhhhccCCCcEEEEE
Q 015700 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPA--SQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 1 MkI~VKtl~g~-~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~--~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~ 73 (402)
|+|+||.+..- .-.+++ ...||.+|++.+....+ +.. ....+..+|+.+.+ .+.-|++||.|.++
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~---l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEG---LKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLL 68 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTT---TTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEE
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcC---HHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEE
Confidence 88999977531 134666 56799999999986533 221 34566678887543 24568899999887
No 221
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=91.71 E-value=0.28 Score=36.75 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=33.2
Q ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015700 174 ATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (402)
Q Consensus 174 ~~v~~i~~M-G~~~f~reqV~~ALrAafnNPdRAvEyL~~ 212 (402)
..|..|.++ | ....+|..||..+-+|-+.|++||..
T Consensus 11 ~~Vk~LRe~TG---ag~~dcKkAL~e~~GDi~~Ai~~Lr~ 47 (64)
T 2cp9_A 11 ELLMKLRRKTG---YSFVNCKKALETCGGDLKQAEIWLHK 47 (64)
T ss_dssp HHHHHHHHHHC---CCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 579999997 8 99999999999999999999999963
No 222
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=90.54 E-value=0.46 Score=32.56 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=35.4
Q ss_pred HHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015700 358 EREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDHM 397 (402)
Q Consensus 358 e~~ai~rL~~l-Gf~~~~viqay~acdkneelAan~L~~~~ 397 (402)
..+.|...+++ |-++..+++-+.+|++|-+.|.+..|+++
T Consensus 5 ~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~~ 45 (46)
T 1v92_A 5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDG 45 (46)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 45678898887 89999999999999999999999988864
No 223
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=90.30 E-value=0.79 Score=45.06 Aligned_cols=72 Identities=13% Similarity=0.057 Sum_probs=53.9
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCC-CCCCCCeEEEe------CCeecCCCCchhhhccCCCcEEEEEE
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSD-VYPASQQMLIH------QGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~-~ip~~~QrLIy------~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
.|.|... +.+-++.++++.||.++..+|.++.... ..+.++--|.. +|+=|++.++|+.|++++++.|....
T Consensus 5 ~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~ 83 (371)
T 3ivf_A 5 SLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK 83 (371)
T ss_dssp EEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC
Confidence 3455544 6677899999999999999998887520 02345555655 46668889999999999999887664
No 224
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=90.22 E-value=1.1 Score=35.23 Aligned_cols=68 Identities=10% Similarity=0.071 Sum_probs=48.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC-----eecCCCCchhhh--ccCCCcEEEEEE
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG-----KVLKDVTTLEEN--KVAENSFVVVML 74 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~G-----KiL~D~~tL~dy--gI~~gs~I~v~v 74 (402)
+|+|.. .-++.|.|..+.+..+|..+|.++.+ ++.+..+|.|+- +++..+..|++- .++++ .|.|-+
T Consensus 7 ~VKV~~--~~tvairvp~~~~y~~L~~~l~~kL~---l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~-~LtL~C 80 (83)
T 1oey_A 7 TLKVHY--KYTVVMKTQPGLPYSQVRDMVSKKLE---LRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVKNY-CLTLWC 80 (83)
T ss_dssp EEEEES--SSEEEEEECTTCCHHHHHHHHHHHTT---CCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCBTT-EEEEEE
T ss_pred EEEEEE--EEEEEEECCCCCCHHHHHHHHHHHhC---CCcceeEEEeeCCCCCCeeccChHHHHHHHHhccCC-cEEEEE
Confidence 455553 36899999999999999999999999 888899999964 234444445443 23344 466554
Q ss_pred e
Q 015700 75 T 75 (402)
Q Consensus 75 ~ 75 (402)
+
T Consensus 81 ~ 81 (83)
T 1oey_A 81 E 81 (83)
T ss_dssp C
T ss_pred e
Confidence 3
No 225
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=89.23 E-value=3 Score=32.20 Aligned_cols=67 Identities=12% Similarity=0.181 Sum_probs=45.8
Q ss_pred EEEEEeC------CC-cEEEEEeCCCCcHHHHHHHHHHHhCCC---CCCC-----CCeEEEeCCeecCCCCchhhhccCC
Q 015700 2 KVFVKTL------KG-THFEIEVKPEDKVSDVKKNIETVQGSD---VYPA-----SQQMLIHQGKVLKDVTTLEENKVAE 66 (402)
Q Consensus 2 kI~VKtl------~g-~~~~ieV~~~~TV~~LK~kI~~~~g~~---~ip~-----~~QrLIy~GKiL~D~~tL~dygI~~ 66 (402)
+|+||.. -| +...+++....||.+|++.+...+..- .+.. ....+..+|+.... ++-|++
T Consensus 2 ~i~V~~fa~lre~~g~~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~ 76 (89)
T 3po0_A 2 SMEWKLFADLAEVAGSRTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAA 76 (89)
T ss_dssp EEEEEECHHHHHHHTCSEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCT
T ss_pred EEEEEEcHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCC
Confidence 4566644 24 567888887889999999998875310 0000 12567778888765 456889
Q ss_pred CcEEEEE
Q 015700 67 NSFVVVM 73 (402)
Q Consensus 67 gs~I~v~ 73 (402)
||.|.++
T Consensus 77 gDeV~i~ 83 (89)
T 3po0_A 77 GDELALF 83 (89)
T ss_dssp TCEEEEE
T ss_pred CCEEEEE
Confidence 9999887
No 226
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=89.15 E-value=1.5 Score=40.95 Aligned_cols=41 Identities=20% Similarity=0.393 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHH-------hh-CCHHHHHHHHHc-CCCC
Q 015700 173 EATVQQILDMGGGSWDRETVIRALRA-------AY-NNPERAVEYLYS-GIPE 216 (402)
Q Consensus 173 e~~v~~i~~MG~~~f~reqV~~ALrA-------af-nNPdRAvEyL~~-GIP~ 216 (402)
..+|+.|.+|| ++..++++..+. .. .|...-++||.. |++.
T Consensus 6 s~~l~~L~~lG---v~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~ 55 (270)
T 3m66_A 6 SETLQKLVLLG---VDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIED 55 (270)
T ss_dssp HHHHHHHHHTT---CCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCG
T ss_pred hHHHHHHHHcC---CCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCH
Confidence 46899999999 999999876555 32 256667899977 7664
No 227
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=88.95 E-value=0.67 Score=36.60 Aligned_cols=65 Identities=12% Similarity=0.110 Sum_probs=41.4
Q ss_pred EEEEeC-CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE-eCCe----ecCCCCchhhhccCCCcEEEEE
Q 015700 3 VFVKTL-KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI-HQGK----VLKDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 3 I~VKtl-~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLI-y~GK----iL~D~~tL~dygI~~gs~I~v~ 73 (402)
+.||.. ++-.|.|.|..+.+..+||.+|..+.. + +...|+ |++. .|.++..|.. -|..+..|.|.
T Consensus 13 ~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk---~--~~~~l~~ykde~~g~~i~sD~dl~~-aiqrn~KL~l~ 83 (85)
T 1ip9_A 13 TKIKFYYKDDIFALMLKGDTTYKELRSKIAPRID---T--DNFKLQTKLFDGSGEEIKTDSQVSN-IIQAKLKISVH 83 (85)
T ss_dssp EEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHT---S--SCEEEEECCSSSCCSCCCSHHHHHH-HHHTTCCEEEE
T ss_pred eEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhc---c--cceEEEEecCCCCCCcccCHHHHHH-HHHhcCeeEEe
Confidence 344433 456899999999999999999999987 4 455554 4433 3333333332 24555555543
No 228
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=88.28 E-value=0.71 Score=32.73 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=34.6
Q ss_pred HHHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHhccCC
Q 015700 359 REAIERLEAM--GFDRALVLEVFFACNKNEELAANYLLDHMH 398 (402)
Q Consensus 359 ~~ai~rL~~l--Gf~~~~viqay~acdkneelAan~L~~~~~ 398 (402)
.+.++.|.+| .-++..+..++.+|+.|.+.|.+.|++...
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~~ 46 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEND 46 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence 3568999999 457999999999999999999999998643
No 229
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=88.24 E-value=0.22 Score=38.28 Aligned_cols=40 Identities=20% Similarity=0.397 Sum_probs=28.7
Q ss_pred hHHhhCcHHHH--HHHHHHHhCccchHHHHHHHHhhCHH-HHHHHHHc
Q 015700 277 LDFLRNSQQFQ--ALRTMVQANPQILQPMLQELGKQNPH-LMRLIQEH 321 (402)
Q Consensus 277 l~~Lr~~pqf~--~lRq~vq~nP~lL~~~lqqi~~~nP~-l~q~I~~n 321 (402)
-+.+++||+.. -|.++-++||++++ +.++||+ |+++|++-
T Consensus 19 R~~vqqNP~lL~~lLqqL~~~NPqL~q-----~I~~n~e~Fl~ll~e~ 61 (72)
T 1pve_A 19 RQIIQQNPSLLPALLQQIGRENPQLLQ-----QISQHQEHFIQMLNEP 61 (72)
T ss_dssp HHHHTTCGGGHHHHHHHHHTTCHHHHH-----HHHTTHHHHHHHHHSC
T ss_pred HHHHHHCHHHHHHHHHHHHhHCHHHHH-----HHHHCHHHHHHHHcCC
Confidence 35667788864 46778889999775 5567854 88888653
No 230
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=85.94 E-value=1.5 Score=42.75 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHH----HHhhCCHHHHHHHHHc
Q 015700 172 LEATVQQILDMGGGSWDRETVIRAL----RAAYNNPERAVEYLYS 212 (402)
Q Consensus 172 ~e~~v~~i~~MG~~~f~reqV~~AL----rAafnNPdRAvEyL~~ 212 (402)
.+.+|+.|.++| +++++++++- ..+-.|||.-++||..
T Consensus 19 ~~~~v~~L~s~G---l~~~~~~~~~p~l~~~s~~~~~~vl~fL~~ 60 (343)
T 3mva_O 19 NEDLLKNLLTMG---VDIDMARKRQPGVFHRMITNEQDLKMFLLS 60 (343)
T ss_dssp -CCHHHHHHHHT---CCHHHHHHHCGGGGGCSCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHcC---CCHHHHHHhCchhhccCcccHHHHHHHHHH
Confidence 456899999999 9999886652 1234589999999964
No 231
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=85.79 E-value=0.34 Score=35.99 Aligned_cols=37 Identities=19% Similarity=0.426 Sum_probs=25.1
Q ss_pred HHhhCcHHHH--HHHHHHHhCccchHHHHHHHHhhCHH-HHHHHH
Q 015700 278 DFLRNSQQFQ--ALRTMVQANPQILQPMLQELGKQNPH-LMRLIQ 319 (402)
Q Consensus 278 ~~Lr~~pqf~--~lRq~vq~nP~lL~~~lqqi~~~nP~-l~q~I~ 319 (402)
+.++++|+.. -|.++-++||++++ +.++||+ |+++|+
T Consensus 18 ~~vq~NP~~L~~lLqql~~~nP~l~~-----~I~~n~e~Fl~ll~ 57 (61)
T 2f4m_B 18 QIIQQNPSLLPALLQQIGRENPQLLQ-----QISQHQEHFIQMLN 57 (61)
T ss_dssp HHHHHCGGGHHHHHHHHHHHCHHHHH-----HHHHSHHHHHHHHT
T ss_pred HHHHHCHHHHHHHHHHHHhHCHHHHH-----HHHHCHHHHHHHHc
Confidence 3344577754 46778889998775 5567754 777774
No 232
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=85.68 E-value=1.6 Score=36.13 Aligned_cols=71 Identities=13% Similarity=0.077 Sum_probs=43.8
Q ss_pred CEEEEEeCC------C--cEEEEEeCC---CCcHHHHHHHHHHHhCCCCCCCCCeEEEeC-Ce------ecCCCCc---h
Q 015700 1 MKVFVKTLK------G--THFEIEVKP---EDKVSDVKKNIETVQGSDVYPASQQMLIHQ-GK------VLKDVTT---L 59 (402)
Q Consensus 1 MkI~VKtl~------g--~~~~ieV~~---~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~-GK------iL~D~~t---L 59 (402)
|+|+|+... | +.++|++.. ..||++|...|.+.+. ..+.+|+.. |+ +|-++.. |
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~-----~~~~~lf~~~g~lr~~i~VlVN~~di~~l 86 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLL-----KERPELFIQGDSVRPGILVLINDADWELL 86 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTC-----CSCHHHHCCSSSCCSSEEEEESSSBHHHH
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHcc-----chhHhhCccCCcccCCeEEEECCeeeecc
Confidence 678888652 3 356788883 3699999999987752 223333222 32 2333332 2
Q ss_pred --hhhccCCCcEEEEEEec
Q 015700 60 --EENKVAENSFVVVMLTK 76 (402)
Q Consensus 60 --~dygI~~gs~I~v~v~k 76 (402)
.++-|++||.|.++-..
T Consensus 87 ~gldt~L~dGDeV~iip~v 105 (114)
T 1wgk_A 87 GELDYQLQDQDSILFISTL 105 (114)
T ss_dssp CTTTCBCCSSEEEEEEECS
T ss_pred CCcCcCCCCCCEEEEeCCC
Confidence 35779999998887543
No 233
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=85.02 E-value=2.4 Score=35.83 Aligned_cols=61 Identities=21% Similarity=0.219 Sum_probs=41.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh----CCCCCCCC----CeEEEe-C---CeecCC----------C----Cchhhhcc
Q 015700 11 THFEIEVKPEDKVSDVKKNIETVQ----GSDVYPAS----QQMLIH-Q---GKVLKD----------V----TTLEENKV 64 (402)
Q Consensus 11 ~~~~ieV~~~~TV~~LK~kI~~~~----g~~~ip~~----~QrLIy-~---GKiL~D----------~----~tL~dygI 64 (402)
..+.+.|-..+||.++|+||-... | +|.. .+.|-| . |++|.| . .||..|+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~---~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V 115 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNG---SPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEI 115 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHS---SCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTC
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCC---CcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCC
Confidence 457888889999999999997553 4 5443 334433 1 233332 1 36888999
Q ss_pred CCCcEEEEEE
Q 015700 65 AENSFVVVML 74 (402)
Q Consensus 65 ~~gs~I~v~v 74 (402)
.+|.+|-++.
T Consensus 116 ~Dgatlal~k 125 (126)
T 3kuz_A 116 SNGSTIKVFK 125 (126)
T ss_dssp CTTCEEEEEE
T ss_pred CCCCEEEEee
Confidence 9999997763
No 234
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=84.98 E-value=2.2 Score=33.64 Aligned_cols=61 Identities=13% Similarity=0.126 Sum_probs=51.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEec
Q 015700 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (402)
Q Consensus 13 ~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k 76 (402)
+...++-..++..||+.++.+.| +.-+.-.+...+..|+++++|-+-+|+-...|.+.+--
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~---i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQ---CSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHC---SCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhc---CCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 33456667889999999999999 77888888888888999999999999988888877653
No 235
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=84.02 E-value=1.6 Score=32.63 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=32.2
Q ss_pred HHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015700 361 AIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDH 396 (402)
Q Consensus 361 ai~rL~~l-Gf~~~~viqay~acdkneelAan~L~~~ 396 (402)
.|+.|.+. |....+|.+|+..||.|.+.|..||-++
T Consensus 12 ~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 12 LLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 38888775 9999999999999999999999999754
No 236
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=83.89 E-value=3.3 Score=32.29 Aligned_cols=72 Identities=14% Similarity=0.128 Sum_probs=44.4
Q ss_pred CEEEEEeCC------CcEEEEEeCCCCcHHHHHHHHHHHhCCC--CC-C-------CCCeEEEeCCeecCCCCchhhhcc
Q 015700 1 MKVFVKTLK------GTHFEIEVKPEDKVSDVKKNIETVQGSD--VY-P-------ASQQMLIHQGKVLKDVTTLEENKV 64 (402)
Q Consensus 1 MkI~VKtl~------g~~~~ieV~~~~TV~~LK~kI~~~~g~~--~i-p-------~~~QrLIy~GKiL~D~~tL~dygI 64 (402)
|+|+|+... |+...++++ ..||.+|+..+..++..- .+ . .....+..+|+...+..-+ ++-|
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~~-~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSAS-GDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEEC-CSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEecC-CCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCC
Confidence 788888552 333346654 579999999998875310 00 0 0135566788776543222 4568
Q ss_pred CCCcEEEEEE
Q 015700 65 AENSFVVVML 74 (402)
Q Consensus 65 ~~gs~I~v~v 74 (402)
++||.|.++-
T Consensus 79 ~~gDeV~i~P 88 (93)
T 3dwg_C 79 ADGDSVTILP 88 (93)
T ss_dssp CTTCEEEEEE
T ss_pred CCCCEEEEEC
Confidence 9999998873
No 237
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=83.57 E-value=4 Score=38.37 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=53.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-CeEEEe---CCe--ecCCCCchhhhccCCCcEEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLIH---QGK--VLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~-~QrLIy---~GK--iL~D~~tL~dygI~~gs~I~v~v 74 (402)
|.|.|..++| ++.+.|+...|+.+|-..|..+.| +... ..=|.| +|. -|+.++.|.+.+++.+..+.+..
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~f 77 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIG---LREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKF 77 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHT---CCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcC---CCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEE
Confidence 4688999988 688999999999999999999999 5432 234443 343 36778888888776666666665
Q ss_pred ecC
Q 015700 75 TKS 77 (402)
Q Consensus 75 ~k~ 77 (402)
+++
T Consensus 78 r~k 80 (294)
T 1ef1_A 78 RAK 80 (294)
T ss_dssp EES
T ss_pred EEE
Confidence 544
No 238
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=83.48 E-value=0.87 Score=39.99 Aligned_cols=37 Identities=24% Similarity=0.223 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHH
Q 015700 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYL 210 (402)
Q Consensus 172 ~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL 210 (402)
..+.|.+|++.| -|+|++|+.||+++-.|.++|+--|
T Consensus 102 R~~K~~eL~s~G--~~~~~~~~~aL~~~~Gdv~~Al~eL 138 (162)
T 4dbg_B 102 RRRKVQELQSLG--FGPEEGSLQALFQHGGDVSRALTEL 138 (162)
T ss_dssp HHHHHHHHHHTT--CCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHhcC--CchHHHHHHHHHHcCCcHHHHHHHH
Confidence 455677788888 3499999999999999999999766
No 239
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=83.38 E-value=1.5 Score=34.63 Aligned_cols=57 Identities=9% Similarity=0.239 Sum_probs=40.7
Q ss_pred CCCcEEEEEeCCC-CcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 8 LKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 8 l~g~~~~ieV~~~-~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
++|+. +++... .||.+|.+.+ + ++.....+..+|+++..+ ...+.-|++||.|-++-
T Consensus 25 vNGe~--~el~~~~~Tv~dLL~~L----~---~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 25 LNGKD--VKWKKDTGTIQDLLASY----Q---LENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVH 82 (87)
T ss_dssp ETTEE--ECCSSSCCBHHHHHHHT----T---CTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEE
T ss_pred ECCEE--EECCCCCCcHHHHHHHh----C---CCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEc
Confidence 35654 445665 8999998875 5 556677788999988643 34455689999998874
No 240
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=82.58 E-value=4.5 Score=38.50 Aligned_cols=73 Identities=15% Similarity=0.067 Sum_probs=53.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC-CCeEEEe--CCe--ecCCCCchhhhccCCCcEEEEEEe
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA-SQQMLIH--QGK--VLKDVTTLEENKVAENSFVVVMLT 75 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~-~~QrLIy--~GK--iL~D~~tL~dygI~~gs~I~v~v~ 75 (402)
+.+.|..++| ++.+.|+.+.|+.+|-..|....| +.. +..-|.| +|. -|+.++.|.+.+++.+..+.+..+
T Consensus 23 ~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 23 FTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLG---LRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHT---CCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred eEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhC---CCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 3578888898 788999999999999999999999 543 2234444 443 277788898887766666655555
Q ss_pred cC
Q 015700 76 KS 77 (402)
Q Consensus 76 k~ 77 (402)
++
T Consensus 99 ~k 100 (314)
T 1h4r_A 99 AK 100 (314)
T ss_dssp ES
T ss_pred EE
Confidence 43
No 241
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=82.54 E-value=0.58 Score=33.88 Aligned_cols=39 Identities=23% Similarity=0.400 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHhc
Q 015700 357 EEREAIERLEAM--GFDRALVLEVFFACNKNEELAANYLLD 395 (402)
Q Consensus 357 ee~~ai~rL~~l--Gf~~~~viqay~acdkneelAan~L~~ 395 (402)
|-.++|+.|++| .+|++.+.-++++++.|.+.|.|.||+
T Consensus 11 e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 11 ERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 445679999999 689999999999999999999999986
No 242
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=81.66 E-value=1.6 Score=33.71 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=43.9
Q ss_pred CEEEEEeCCCcEEEEEeC--CCCcHHHHHHHHHHHhCCCCCC-CCCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVK--PEDKVSDVKKNIETVQGSDVYP-ASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~--~~~TV~~LK~kI~~~~g~~~ip-~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
|+|+|. |+.+. +. ...||.+|.+.+ + ++ ....-+.++|.++..+ ...++-+++||.|-++-
T Consensus 1 M~I~vN---Ge~~e--~~~~~~~Tl~~LL~~l----~---~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 1 MNLTVN---GKPST--VDGAESLNVTELLSAL----K---VAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLY 64 (78)
T ss_dssp CEEEET---TEEEE--CSSCSCEEHHHHHHHH----T---CSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECC
T ss_pred CEEEEC---CEEEE--cCCCCCCcHHHHHHHc----C---CCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEe
Confidence 666554 76554 45 568999988754 5 66 6667788999998643 45667789999998874
No 243
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=81.41 E-value=1.7 Score=30.68 Aligned_cols=35 Identities=26% Similarity=0.385 Sum_probs=29.8
Q ss_pred HHHHHH--cCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015700 362 IERLEA--MGFDRALVLEVFFACNKNEELAANYLLDH 396 (402)
Q Consensus 362 i~rL~~--lGf~~~~viqay~acdkneelAan~L~~~ 396 (402)
|++-.. -|=+|+..|.-+...+-|.++|.|-||+.
T Consensus 13 i~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsR 49 (53)
T 2qho_B 13 ISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSR 49 (53)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC-
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhcc
Confidence 555444 38999999999999999999999999997
No 244
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=81.36 E-value=4.9 Score=42.36 Aligned_cols=65 Identities=18% Similarity=0.295 Sum_probs=45.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCe-ecCCC-------------CchhhhccCC
Q 015700 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYP------ASQQMLIH----QGK-VLKDV-------------TTLEENKVAE 66 (402)
Q Consensus 11 ~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip------~~~QrLIy----~GK-iL~D~-------------~tL~dygI~~ 66 (402)
..+.+.|-..+||.++|+||-+..-++ +| ++..-|-| .|+ +|.|. .||..|+|.+
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~-~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKG-IPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcC-CCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 457888889999999999999776332 33 33445544 233 45552 3689999999
Q ss_pred CcEEEEEEec
Q 015700 67 NSFVVVMLTK 76 (402)
Q Consensus 67 gs~I~v~v~k 76 (402)
|.+|.++-+.
T Consensus 326 ga~v~L~p~~ 335 (627)
T 3ig3_A 326 GSLVALVPKQ 335 (627)
T ss_dssp TCEEEEEEC-
T ss_pred CceEEEEecc
Confidence 9999987543
No 245
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=81.28 E-value=1.6 Score=33.13 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=43.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
|+|+| +|+.+. + ...||.+|.+. .+ +++...-+.++|.++..+ ...++-+++||.|-++-
T Consensus 1 M~I~v---NG~~~e--~-~~~Tl~~LL~~----l~---~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 1 MLVTI---NGEQRE--V-QSASVAALMTE----LD---CTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILT 60 (73)
T ss_dssp CCEEE---TTEEEC--C-CCSBHHHHHHH----TT---CCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEEC
T ss_pred CEEEE---CCEEEE--c-CCCcHHHHHHH----cC---CCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEc
Confidence 55554 476554 4 56899998764 46 777778888999988632 34556789999998874
No 246
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=81.02 E-value=4.1 Score=43.02 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=45.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC------CCeEEEe----CCe-ecCCC-------------CchhhhccCC
Q 015700 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPA------SQQMLIH----QGK-VLKDV-------------TTLEENKVAE 66 (402)
Q Consensus 11 ~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~------~~QrLIy----~GK-iL~D~-------------~tL~dygI~~ 66 (402)
..+.+.|-..+||.++|+||-+..-++ +|. +...|-| .|+ +|.|. .||..|+|.+
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~-~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 352 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKG-VPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 352 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcC-CCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCC
Confidence 347788889999999999999665332 443 3444544 233 46653 3799999999
Q ss_pred CcEEEEEEec
Q 015700 67 NSFVVVMLTK 76 (402)
Q Consensus 67 gs~I~v~v~k 76 (402)
|.+|.++-+.
T Consensus 353 ga~v~L~p~~ 362 (644)
T 3hm6_X 353 GATVALVPCL 362 (644)
T ss_dssp TCEEEEEEC-
T ss_pred CcEEEEEecc
Confidence 9999876543
No 247
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=80.99 E-value=2.9 Score=30.81 Aligned_cols=63 Identities=17% Similarity=0.084 Sum_probs=41.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEe
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~ 75 (402)
|+|+|+..+|+. +++....|+.+|-+.|....+ ....-...+|++.+-+ +-|++|+.|.++-.
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~-----~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG-----DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLSS 63 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH-----HTEEEEEETTEECCTT-----CBCCSSSBEEEEEC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc-----cceEEEEECCEEeCCC-----cCcCCCCEEEEEEC
Confidence 788998778876 456678999999888754332 1112223688876544 45667888877753
No 248
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=80.99 E-value=3.1 Score=32.59 Aligned_cols=45 Identities=9% Similarity=0.265 Sum_probs=37.8
Q ss_pred ccCCHHHHHH----HHHHHH-cC--CChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015700 352 VTVTPEEREA----IERLEA-MG--FDRALVLEVFFACNKNEELAANYLLDH 396 (402)
Q Consensus 352 i~~t~ee~~a----i~rL~~-lG--f~~~~viqay~acdkneelAan~L~~~ 396 (402)
-+|++.|++. ++.+.+ || .++...++|-+.||=|.+.|.||+|+.
T Consensus 24 ~~Ls~~d~arL~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 24 HQLSEIDQARLYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 3688888876 455555 57 899999999999999999999999964
No 249
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=80.83 E-value=4 Score=34.49 Aligned_cols=51 Identities=25% Similarity=0.336 Sum_probs=36.6
Q ss_pred CCcHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeec-----CC--CCchhhhccCCCcEEEEEE
Q 015700 20 EDKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVL-----KD--VTTLEENKVAENSFVVVML 74 (402)
Q Consensus 20 ~~TV~~LK~kI~~~~g~~~ip~~~QrLIy--~GKiL-----~D--~~tL~dygI~~gs~I~v~v 74 (402)
..|+.+|-+.|..++| +. +...++- ..+.| +| +++|+++||+.|++|.|+=
T Consensus 19 ~~TL~dLV~~l~~~~g---y~-~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 19 KMKLSDFVVLIREKYS---YP-QDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HCBHHHHHHHHHHHHT---CC-SSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred ccCHHHHHHHHHHhcC---CC-CcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 4799998888988888 53 2444331 23343 33 5899999999999998874
No 250
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=80.36 E-value=2.4 Score=31.11 Aligned_cols=61 Identities=7% Similarity=0.207 Sum_probs=41.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
|+|+| +|+. +++....||.+|.+.+ + ++.....+..+|+++..+ ...+.-+++||.|.++-
T Consensus 1 m~i~v---Ng~~--~~~~~~~tv~~ll~~l----~---~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 1 MQILF---NDQA--MQCAAGQTVHELLEQL----D---QRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp CCEEE---SSCE--ECCCTTCCHHHHHHHH----T---CCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEE
T ss_pred CEEEE---CCEE--EEcCCCCcHHHHHHHc----C---CCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEe
Confidence 55544 4665 4556778999999876 4 556677778899987632 22344688999998773
No 251
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=80.36 E-value=0.52 Score=38.95 Aligned_cols=69 Identities=10% Similarity=0.099 Sum_probs=42.5
Q ss_pred CEEEEEeCC------CcEEEEEeCC----CCcHHHHHHHHHHHhCCCCCCCCCeEEE-eCC--e------ecCCCCch--
Q 015700 1 MKVFVKTLK------GTHFEIEVKP----EDKVSDVKKNIETVQGSDVYPASQQMLI-HQG--K------VLKDVTTL-- 59 (402)
Q Consensus 1 MkI~VKtl~------g~~~~ieV~~----~~TV~~LK~kI~~~~g~~~ip~~~QrLI-y~G--K------iL~D~~tL-- 59 (402)
|+|+||... |+...+++.. ..||++|-..|.+.+. ..+-+|+ -+| + +|-++...
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~-----~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~ 79 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV-----KERPDLLVDQTGQTLRPGILVLVNSCDAEV 79 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC-----CSCHHHHBCSSSSSBCTTEEEEESSSBHHH
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc-----ccchhhEecCCCcccCCCeEEEECCeeeec
Confidence 677887654 3545677763 2599999988877753 2333433 223 2 34444433
Q ss_pred ---hhhccCCCcEEEEEE
Q 015700 60 ---EENKVAENSFVVVML 74 (402)
Q Consensus 60 ---~dygI~~gs~I~v~v 74 (402)
.+|-+++||.|.++-
T Consensus 80 l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 80 VGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp HTSSCCCCCSSCEEEEEE
T ss_pred cCCcccCCCCcCEEEEeC
Confidence 346799999987764
No 252
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=79.73 E-value=3.7 Score=31.26 Aligned_cols=44 Identities=14% Similarity=0.262 Sum_probs=36.4
Q ss_pred CCHHHHHH-HHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015700 354 VTPEEREA-IERLEAM--GFDRALVLEVFFACNKNEELAANYLLDHM 397 (402)
Q Consensus 354 ~t~ee~~a-i~rL~~l--Gf~~~~viqay~acdkneelAan~L~~~~ 397 (402)
++..+++. |.++++| -+.+.-+.+.+..|+.|.|.+.|.|||+.
T Consensus 8 ~~~~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~ 54 (71)
T 2di0_A 8 MCGVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEER 54 (71)
T ss_dssp CSSHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccC
Confidence 34555444 8889888 46799999999999999999999999964
No 253
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=79.71 E-value=2.7 Score=33.49 Aligned_cols=35 Identities=20% Similarity=0.142 Sum_probs=26.1
Q ss_pred CEEEEEeC------C-C-cEEEEEeC--CCCcHHHHHHHHHHHhC
Q 015700 1 MKVFVKTL------K-G-THFEIEVK--PEDKVSDVKKNIETVQG 35 (402)
Q Consensus 1 MkI~VKtl------~-g-~~~~ieV~--~~~TV~~LK~kI~~~~g 35 (402)
|+|+||.. . | +.+++++. ...||.+|...+.+++.
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~ 46 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMI 46 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTC
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCc
Confidence 57888754 2 2 45677776 67899999999998864
No 254
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=79.48 E-value=6.8 Score=31.74 Aligned_cols=71 Identities=18% Similarity=0.091 Sum_probs=49.2
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE------eCCeecCCCCchhhh----ccCCCcEEEE
Q 015700 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI------HQGKVLKDVTTLEEN----KVAENSFVVV 72 (402)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLI------y~GKiL~D~~tL~dy----gI~~gs~I~v 72 (402)
|+|-..+|....|.|+.++|++++-+++..+.++. ....--|+ +--+.|+|...|-+. .+.....+++
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~--~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F 89 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHAL--SDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVF 89 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCC--CCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCC--CCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEE
Confidence 55666789999999999999999999999998842 12222332 234778998766554 4555566655
Q ss_pred EEe
Q 015700 73 MLT 75 (402)
Q Consensus 73 ~v~ 75 (402)
.-+
T Consensus 90 ~kr 92 (100)
T 1wgr_A 90 RKN 92 (100)
T ss_dssp CSC
T ss_pred ecc
Confidence 433
No 255
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=78.75 E-value=2 Score=32.62 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=20.6
Q ss_pred hhCcHHHHHHHHHHHhCccchHHHHHHHHhhCHHHHHHHHHcHH
Q 015700 280 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQT 323 (402)
Q Consensus 280 Lr~~pqf~~lRq~vq~nP~lL~~~lqqi~~~nP~l~q~I~~n~e 323 (402)
+.+.|.++ .+-+||++. .+||+|. +||..++-...||+
T Consensus 16 ~m~dPEi~----~im~DP~~~-~~lq~~~-~NP~~~~k~~~nP~ 53 (71)
T 2llw_A 16 AMKDPEVA----AIMQDPVMQ-SILQQAQ-QNPAALQEHMKNPE 53 (71)
T ss_dssp HHHSHHHH----HHHTCTHHH-HHHHHHH-HCHHHHHHHHHSHH
T ss_pred HhcCHHHH----HHhCCHHHH-HHHHHHH-HCHHHHHHHHhCHH
Confidence 33455543 234666543 3555544 46776666666664
No 256
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=78.56 E-value=7.9 Score=30.73 Aligned_cols=67 Identities=15% Similarity=0.235 Sum_probs=42.1
Q ss_pred CEEEEEeCC------C-cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC-----C----Ce-------EEEeCCeecCCCC
Q 015700 1 MKVFVKTLK------G-THFEIEVKPEDKVSDVKKNIETVQGSDVYPA-----S----QQ-------MLIHQGKVLKDVT 57 (402)
Q Consensus 1 MkI~VKtl~------g-~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~-----~----~Q-------rLIy~GKiL~D~~ 57 (402)
|+|+|+... | +.+.++ ..||.+|.+.+...+.. +.. . .. .+..+|+......
T Consensus 4 m~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~--l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~ 78 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPA--LKYVIFEKGDEKSEILILCGSINILINGNNIRHLE 78 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGG--GTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT
T ss_pred eEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChh--HHHHHhcccccccceeccccccEEEECCEEccccC
Confidence 788888663 2 344444 58999999999887421 111 1 12 5667787663221
Q ss_pred chhhhccCCCcEEEEE
Q 015700 58 TLEENKVAENSFVVVM 73 (402)
Q Consensus 58 tL~dygI~~gs~I~v~ 73 (402)
. .++-+++||.|.++
T Consensus 79 ~-~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 79 G-LETLLKDSDEIGIL 93 (99)
T ss_dssp S-TTSCCCTTEEEEEE
T ss_pred C-CCCCCCCCCEEEEE
Confidence 1 23468999998886
No 257
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=77.01 E-value=6.3 Score=41.32 Aligned_cols=74 Identities=14% Similarity=0.111 Sum_probs=54.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC-CCeEEEeC---C--eecCCCCchhhhccCCCcEEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA-SQQMLIHQ---G--KVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~-~~QrLIy~---G--KiL~D~~tL~dygI~~gs~I~v~v 74 (402)
|.|.|..++| ++.|.|+.+.|+.+|-..|+...| +.. +..-|.|. | ..|+.+++|.+.+++.+..+.+..
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~Lg---L~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~F 80 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIG---LREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKF 80 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHT---CCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcC---CCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEE
Confidence 4678888888 688999999999999999999999 532 33445442 2 246778888888777777666666
Q ss_pred ecCC
Q 015700 75 TKSK 78 (402)
Q Consensus 75 ~k~k 78 (402)
+++-
T Consensus 81 Rvkf 84 (575)
T 2i1j_A 81 RAKF 84 (575)
T ss_dssp EESS
T ss_pred EEEE
Confidence 5543
No 258
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=76.60 E-value=13 Score=27.85 Aligned_cols=57 Identities=5% Similarity=0.086 Sum_probs=37.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCC--CCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEE
Q 015700 11 THFEIEVKPEDKVSDVKKNIETVQGS--DVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 11 ~~~~ieV~~~~TV~~LK~kI~~~~g~--~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~ 73 (402)
..+.++ ....||.+|++.+...+.. ..+......+..+|+.... +.-|++||.|.++
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFF 75 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEE
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEe
Confidence 355565 5677999999998755210 0011234567789988753 4568899999887
No 259
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=76.51 E-value=1.5 Score=31.30 Aligned_cols=38 Identities=24% Similarity=0.405 Sum_probs=32.6
Q ss_pred chHHHHHHHHHHcCCCCCCHHH--HHHHHHHhhCCHHHHHHHH
Q 015700 170 SNLEATVQQILDMGGGSWDRET--VIRALRAAYNNPERAVEYL 210 (402)
Q Consensus 170 ~~~e~~v~~i~~MG~~~f~req--V~~ALrAafnNPdRAvEyL 210 (402)
+..++.|.+|++|| |+-+- ..+.|.+.-.|-.+|++-|
T Consensus 8 ~rl~~al~qMl~MG---F~negGWLt~LL~~k~gDI~~aLD~l 47 (52)
T 1q02_A 8 PRLIESLSQMLSMG---FSDEGGWLTRLLQTKNYDIGAALDTI 47 (52)
T ss_dssp HHHHHHHHHHHTTT---CCCTTSHHHHHHHHTTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHcC---CCccccHHHHHHHHccCCHHHHHHHh
Confidence 45789999999999 97554 3589999999999999987
No 260
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=76.02 E-value=8.7 Score=37.49 Aligned_cols=71 Identities=23% Similarity=0.217 Sum_probs=51.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC---------eecCCCCchhhhccCCCcEEEE
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---------KVLKDVTTLEENKVAENSFVVV 72 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~G---------KiL~D~~tL~dygI~~gs~I~v 72 (402)
.+.|..++|....+.|+...|+.+|-..|..+.|- ...+..-|.+.. +-|+-+++|.+.++.....+++
T Consensus 87 ~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L--~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~f 164 (371)
T 3ivf_A 87 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGI--TNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLL 164 (371)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTC--SCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEE
T ss_pred EEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCC--CCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEE
Confidence 57889999999999999999999999999999983 223344555532 2355567777776665555555
Q ss_pred EE
Q 015700 73 ML 74 (402)
Q Consensus 73 ~v 74 (402)
.+
T Consensus 165 rv 166 (371)
T 3ivf_A 165 RR 166 (371)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 261
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=75.69 E-value=3 Score=30.79 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=25.1
Q ss_pred CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 015700 168 AGSNLEATVQQILDMGGGSWDRETVIRALRAA 199 (402)
Q Consensus 168 ~g~~~e~~v~~i~~MG~~~f~reqV~~ALrAa 199 (402)
.++..++.|.-|+.+| |.+.++.+|++..
T Consensus 13 ~~~~~~ea~~AL~aLG---Y~~~ea~kav~~v 41 (62)
T 1ixs_A 13 ESEAAEEAVMALAALG---FKEAQARAVVLDL 41 (62)
T ss_dssp CCHHHHHHHHHHHHTT---CCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 3445678999999999 9999999999886
No 262
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=75.54 E-value=8.1 Score=30.60 Aligned_cols=69 Identities=10% Similarity=0.172 Sum_probs=45.3
Q ss_pred EEEEe-CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCC-eEEEeCCee-----cCCC----CchhhhccCCCcEEE
Q 015700 3 VFVKT-LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKV-----LKDV----TTLEENKVAENSFVV 71 (402)
Q Consensus 3 I~VKt-l~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~-QrLIy~GKi-----L~D~----~tL~dygI~~gs~I~ 71 (402)
|+||. .+|..+.+.|+++.+..+|.++|.+.++ +...+ ..|-|.... +.++ ..|.-|.+..++.++
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~---~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~~~~l~ 83 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCS---FDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDSELL 83 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTT---CCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTSCCCEE
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhC---CCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccCCCCEE
Confidence 34443 4678889999999999999999999998 65443 677776432 2221 224445555666555
Q ss_pred EEE
Q 015700 72 VML 74 (402)
Q Consensus 72 v~v 74 (402)
++|
T Consensus 84 ihv 86 (89)
T 1vd2_A 84 IHV 86 (89)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 263
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=75.17 E-value=2.8 Score=30.76 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=24.6
Q ss_pred HHhhCcHHHHHHHHHHHhCccchHHHHHHHHhhCHHHHHHHH
Q 015700 278 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 319 (402)
Q Consensus 278 ~~Lr~~pqf~~lRq~vq~nP~lL~~~lqqi~~~nP~l~q~I~ 319 (402)
..+.++|+|.+.=+-+++||..+..+ .+||.+.+.|+
T Consensus 15 ~~~m~dP~~~~~lq~i~~NP~~~~~~-----~~dP~v~~~~~ 51 (62)
T 2lnm_A 15 AMAFQNPRVQAALMECSENPMNIMKY-----QNDKEVMDVFN 51 (62)
T ss_dssp HHHTTSHHHHHHHHHHTTCGGGHHHH-----TTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHCHHHHHHH-----HhChHHHHHHH
Confidence 34446788877777777888876643 24777777663
No 264
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=75.05 E-value=10 Score=35.98 Aligned_cols=70 Identities=14% Similarity=-0.010 Sum_probs=49.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCC-CCCeEEEeC---C--eecCCCCchhhhccCCCcEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYP-ASQQMLIHQ---G--KVLKDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip-~~~QrLIy~---G--KiL~D~~tL~dygI~~gs~I~v~ 73 (402)
|.+.|..++|....+.|+...|+.+|-..|..+.| +. .+..-|.|. | .-|+.++.|.+........+++.
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~fr 93 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLN---LLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFN 93 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHT---CSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEE
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcC---CCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEE
Confidence 56889999999999999999999999999999999 53 233445442 3 23677888887643333344443
No 265
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=74.95 E-value=4.8 Score=30.02 Aligned_cols=54 Identities=7% Similarity=0.089 Sum_probs=39.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCe--EEEeCCeecCCCCchhhhccCCCcEEEEE
Q 015700 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQ--MLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 11 ~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~Q--rLIy~GKiL~D~~tL~dygI~~gs~I~v~ 73 (402)
+...+++....||.+|.+.+...+.. .... .+..+|+....+ .-+++||.|.++
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p~----~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ 71 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYPQ----INNKKFQVAVNEEFVQKS-----DFIQPNDTVALI 71 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCGG----GTTCCCEEEETTEEECTT-----SEECTTCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCcc----hhcceEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 35667777778999999999877431 1233 677899988753 578899999887
No 266
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=73.91 E-value=2.1 Score=39.38 Aligned_cols=23 Identities=13% Similarity=0.514 Sum_probs=21.2
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015700 173 EATVQQILDMGGGSWDRETVIRALRA 198 (402)
Q Consensus 173 e~~v~~i~~MG~~~f~reqV~~ALrA 198 (402)
+..|+++++|| |+|+.|+.||+-
T Consensus 170 ~~~v~~~~~mg---~~~~~~~~al~~ 192 (215)
T 1tte_A 170 HDLIDEFESQG---FEKDKIVEVLRR 192 (215)
T ss_dssp HHHHHHHHHHT---CCHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHH
Confidence 67999999999 999999999964
No 267
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.12 E-value=6.6 Score=29.26 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHhccCC
Q 015700 357 EEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDHMH 398 (402)
Q Consensus 357 ee~~ai~rL~~l-Gf~~~~viqay~acdkneelAan~L~~~~~ 398 (402)
.+.+.|...+++ |-++..+++.+-+|++|-|.|.+..|++..
T Consensus 16 ~~q~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~~~ 58 (66)
T 2dzl_A 16 RHQVMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQETN 58 (66)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTCSC
T ss_pred ccHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 333679999887 899999999999999999999999998643
No 268
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=73.07 E-value=2.8 Score=33.85 Aligned_cols=59 Identities=17% Similarity=0.257 Sum_probs=39.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-----------CeEEEeCC-eecCC------CCchhhhccCCCcEEEEE
Q 015700 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-----------QQMLIHQG-KVLKD------VTTLEENKVAENSFVVVM 73 (402)
Q Consensus 12 ~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~-----------~QrLIy~G-KiL~D------~~tL~dygI~~gs~I~v~ 73 (402)
...|+|++++|+.+|-+.|.+.-. +... ...|+..+ ..|+. +++|.++|+.+|+.|+|.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~---~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSAS---LQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTT---CCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChH---hhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 346899999999999999988533 2222 22333332 23322 477999999999998874
No 269
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=72.10 E-value=4.2 Score=35.65 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHcC-CChHHHHHHHHHhCCCHHHHHHHHh
Q 015700 357 EEREAIERLEAMG-FDRALVLEVFFACNKNEELAANYLL 394 (402)
Q Consensus 357 ee~~ai~rL~~lG-f~~~~viqay~acdkneelAan~L~ 394 (402)
+-+..++.|..+| |++++|++|+.+...|++.|...|=
T Consensus 101 ~R~~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eLq 139 (162)
T 4dbg_B 101 TRRRKVQELQSLGFGPEEGSLQALFQHGGDVSRALTELQ 139 (162)
T ss_dssp HHHHHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHHH
Confidence 3445689999999 5999999999999999999987663
No 270
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=70.33 E-value=33 Score=26.89 Aligned_cols=72 Identities=18% Similarity=0.115 Sum_probs=46.2
Q ss_pred CEEEEEeCCCcEEEEEeC-CCCcHHHHHHHHHHHhCCC-CCCCC-CeE---EEe-CCeecCCCCchhhhccCCCcEEEEE
Q 015700 1 MKVFVKTLKGTHFEIEVK-PEDKVSDVKKNIETVQGSD-VYPAS-QQM---LIH-QGKVLKDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~-~~~TV~~LK~kI~~~~g~~-~ip~~-~Qr---LIy-~GKiL~D~~tL~dygI~~gs~I~v~ 73 (402)
|||+|+. .+..+.|-.. ...||..|-++--.++-+. ...++ ..+ |-+ .|-+|+.+..|.+. +.++++|+-+
T Consensus 3 MKvtV~f-g~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dV-ldD~e~i~A~ 80 (85)
T 2ns5_A 3 FKVTVCF-GRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDV-ADDKDRLVAV 80 (85)
T ss_dssp EEEEEEE-TTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHH-SCTTEEEEEE
T ss_pred cEEEEEE-CCEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhh-ccCcceEEEE
Confidence 8999995 5666777764 4569999877665554221 01122 222 223 78899988899887 6677887655
Q ss_pred E
Q 015700 74 L 74 (402)
Q Consensus 74 v 74 (402)
.
T Consensus 81 ~ 81 (85)
T 2ns5_A 81 F 81 (85)
T ss_dssp E
T ss_pred e
Confidence 4
No 271
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=67.47 E-value=19 Score=34.74 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=40.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCC-eecCC-CCchhhhcc
Q 015700 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG-KVLKD-VTTLEENKV 64 (402)
Q Consensus 11 ~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~G-KiL~D-~~tL~dygI 64 (402)
....+.+.+..|+.+||++|+..++ ++++.|.|+|.+ +..-+ ......|.-
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~t~---i~~~~q~~l~~~~~~~~~~~~~~~~~~~ 374 (396)
T 4eut_A 322 TAHKIYIHSYNTATIFHELVYKQTK---IISSNQELIYEGRRLVLEPGRLAQHFPK 374 (396)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHC---CCSTTEEEESSSSEECCCSSCBTTSSCC
T ss_pred eEEEEEcCchhHHHHHHHHHHHhcC---CChhhhHHHhcCCCCCCCCCCccccCCC
Confidence 4566888999999999999999999 999999999998 44444 345555543
No 272
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=65.80 E-value=7.5 Score=28.19 Aligned_cols=56 Identities=11% Similarity=0.230 Sum_probs=39.3
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 8 l~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
++|+.+. + ...||.+|.+.+ + ++.....+..+|+++..+ .-.+.-+++||.|.++-
T Consensus 4 vNg~~~~--~-~~~tv~~ll~~l----~---~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 4 LNGEPRP--L-EGKTLKEVLEEM----G---VELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp ETTEEEC--C-TTCCHHHHHHHH----T---BCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEE
T ss_pred ECCEEEE--c-CCCcHHHHHHHc----C---CCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEe
Confidence 4676654 4 568999998876 4 555666778899988643 22334688999998874
No 273
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=65.12 E-value=14 Score=28.89 Aligned_cols=42 Identities=10% Similarity=0.158 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015700 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (402)
Q Consensus 172 ~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~G 213 (402)
+..-+.+|-+.=|...++.+++.|.-.+-+|++||+.|+|+.
T Consensus 34 L~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 34 LYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 334466666654467899999888888899999999999964
No 274
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=61.29 E-value=3.6 Score=29.67 Aligned_cols=42 Identities=19% Similarity=0.118 Sum_probs=31.6
Q ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015700 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (402)
Q Consensus 170 ~~~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~ 212 (402)
.+.++.|++|.+|=-+ ++|+=++.-|++--.|-|-+|+.||.
T Consensus 10 ~e~~~~~~~L~~MFP~-lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 10 NERKDTLNTLQNMFPD-MDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHHHSTT-SCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHHHccc-CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4678999999999322 89999999999999999999999873
No 275
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=60.77 E-value=8.7 Score=27.39 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcCCChHH--HHHHHHHhCCCHHHHHHHHh
Q 015700 358 EREAIERLEAMGFDRAL--VLEVFFACNKNEELAANYLL 394 (402)
Q Consensus 358 e~~ai~rL~~lGf~~~~--viqay~acdkneelAan~L~ 394 (402)
=.++|.++.+|||+-+- .-+.+.+++.|...|.+.|-
T Consensus 10 l~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 10 LIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHhh
Confidence 35789999999996443 45888999999998888763
No 276
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=59.68 E-value=7 Score=32.97 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=29.2
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe
Q 015700 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH 48 (402)
Q Consensus 13 ~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy 48 (402)
..+.|--+.||.+||..|+...| ++++.|||-+
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg---~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMG---FPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHC---CCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhC---CCcccEEEEE
Confidence 35788889999999999999999 9999999853
No 277
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=57.98 E-value=12 Score=33.87 Aligned_cols=37 Identities=27% Similarity=0.272 Sum_probs=33.1
Q ss_pred HHHHHHHHHc-CCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015700 173 EATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (402)
Q Consensus 173 e~~v~~i~~M-G~~~f~reqV~~ALrAafnNPdRAvEyL~~ 212 (402)
-.+|.+|-++ | +.=-+|..||..+-+|-|.|+|||.-
T Consensus 4 a~~VKeLRe~TG---agmmdCKkAL~e~~GD~ekAie~LR~ 41 (196)
T 1aip_C 4 MELIKKLREATG---AGMMDVKRALEDAGWDEEKAVQLLRE 41 (196)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3578999997 7 78889999999999999999999974
No 278
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=57.37 E-value=36 Score=27.64 Aligned_cols=69 Identities=12% Similarity=0.153 Sum_probs=47.1
Q ss_pred EEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE---eCCee--cCCCCchhhhccCCCcEEEEEEe
Q 015700 4 FVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI---HQGKV--LKDVTTLEENKVAENSFVVVMLT 75 (402)
Q Consensus 4 ~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLI---y~GKi--L~D~~tL~dygI~~gs~I~v~v~ 75 (402)
.|-..+...+++.+..+.|+.+|+..+.++.+ +..+.+.|+ ++|.. |+++..--.-.+.-+..|++..+
T Consensus 13 ~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~---~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 13 HVYITEHSYVSVKAKVSSIAQEILKVVAEKIQ---YAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp EEECSSSCEEEECCCTTCBSHHHHHHHHHHHT---SCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred EEEeccCceEEEEEeccchHHHHHHHHHHHhc---CCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 34445667788899999999999999999998 655578775 67754 45443222223444567777654
No 279
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=55.44 E-value=13 Score=39.86 Aligned_cols=51 Identities=18% Similarity=0.333 Sum_probs=40.9
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCe-ecCCCCchhhh
Q 015700 9 KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGK-VLKDVTTLEEN 62 (402)
Q Consensus 9 ~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GK-iL~D~~tL~dy 62 (402)
..+...+.+.++.|+.+||..|...+| ++++.|.|++.+. .|........|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~---i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTG---IPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSC---CCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhC---CCHHHHHHHhccCCCCCCCcchhhh
Confidence 345567889999999999999999999 9999999998654 45555566655
No 280
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=55.35 E-value=13 Score=35.71 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=32.8
Q ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015700 174 ATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (402)
Q Consensus 174 ~~v~~i~~M-G~~~f~reqV~~ALrAafnNPdRAvEyL~~ 212 (402)
.+|++|-++ | +.=-+|..||..+-+|-|.|+|||.-
T Consensus 6 ~~VKeLRe~TG---agmmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 6 ELLMKLRRKTG---YSFINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 578999987 7 88889999999999999999999983
No 281
>1b4u_A LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: a.88.1.1 PDB: 1bou_A
Probab=55.27 E-value=22 Score=30.39 Aligned_cols=49 Identities=14% Similarity=0.185 Sum_probs=37.4
Q ss_pred hHHHHHHHHhhCHHHHHHHHHcHHHHHHHhcCCCCCCCCcccccccccCCccccCCHHHHHHH-----HHHHHcCCChH
Q 015700 300 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAI-----ERLEAMGFDRA 373 (402)
Q Consensus 300 L~~~lqqi~~~nP~l~q~I~~n~e~Fl~~l~~~~~~~~g~~~~~~~~~~~~~i~~t~ee~~ai-----~rL~~lGf~~~ 373 (402)
|..++++|. .|++++...++|+++++- ..||+||++|| .+|..+|-.--
T Consensus 37 LNkf~~sL~--~~~~RerF~aDpeA~l~~-----------------------~gLTeEEr~AV~~rD~~~L~~lGgn~y 90 (139)
T 1b4u_A 37 LNQFAMSLM--KAENRERFKADESAYLDE-----------------------WNLTPAAKAAVLARDYNAMIDEGGNVY 90 (139)
T ss_dssp HHHHHHHTT--SHHHHHHHHHCHHHHHHT-----------------------TTCCHHHHHHHHHTCHHHHHHTTCCHH
T ss_pred HHHHHHHHC--CHHHHHHHHhCHHHHHHH-----------------------cCCCHHHHHHHHcCCHHHHHHcCCCHH
Confidence 457788886 499999999999988642 25799999994 56888886543
No 282
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=53.96 E-value=38 Score=25.57 Aligned_cols=58 Identities=10% Similarity=0.247 Sum_probs=36.7
Q ss_pred EEeCCCCcHHHHHHHHHHHhCC--C--CC----CCCCeEEEeCCeecCCCCchhhhccCCCcEEEEE
Q 015700 15 IEVKPEDKVSDVKKNIETVQGS--D--VY----PASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 15 ieV~~~~TV~~LK~kI~~~~g~--~--~i----p~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~ 73 (402)
++++...||.+|.+.+...+.. . .+ ......+..+|+...... -.++-|++||.|.++
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLF 84 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEe
Confidence 4555568999999999877420 0 00 013456778888775221 124468999998886
No 283
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=53.70 E-value=11 Score=25.95 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=29.9
Q ss_pred HHHHHHHHHc-CCCh-HHHHHHHHHhCCCHHHHHHHH
Q 015700 359 REAIERLEAM-GFDR-ALVLEVFFACNKNEELAANYL 393 (402)
Q Consensus 359 ~~ai~rL~~l-Gf~~-~~viqay~acdkneelAan~L 393 (402)
.+.|..++++ |-+. ..+++-+.+|++|-+.|.+-.
T Consensus 6 de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f 42 (45)
T 3e21_A 6 EMILADFQACTGIENIDEAITLLEQNNWDLVAAINGV 42 (45)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 4568889988 9876 999999999999999998743
No 284
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=53.00 E-value=20 Score=28.71 Aligned_cols=59 Identities=8% Similarity=-0.046 Sum_probs=41.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 11 ~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
..+.+++....||.++-+...-......+.....++-.+|++.. .++-+++||.|-++-
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 45677898999999988877542221014445677888888887 344578999998874
No 285
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=51.80 E-value=7.3 Score=29.32 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=16.9
Q ss_pred CcHHHHHHHHHHHhCccchHH-HHHHHHhhCHHHHHHH
Q 015700 282 NSQQFQALRTMVQANPQILQP-MLQELGKQNPHLMRLI 318 (402)
Q Consensus 282 ~~pqf~~lRq~vq~nP~lL~~-~lqqi~~~nP~l~q~I 318 (402)
..|+|.++=+-|++||+.+.. .+ +||.+.+.|
T Consensus 30 ~DP~~~~~lq~i~~NP~~i~~~~~-----~dPrv~~~l 62 (71)
T 2llv_A 30 KDPQLVAKLIGYKQNPQAIGQDLF-----TDPRLMTIM 62 (71)
T ss_dssp HSCTHHHHHHHHHHSCTTHHHHTT-----TCHHHHHHH
T ss_pred cCHHHHHHHHHHHHCHHHHHHHHh-----hCcHHHHHH
Confidence 445555555556666665542 22 356655544
No 286
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=51.43 E-value=18 Score=26.42 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHh
Q 015700 357 EEREAIERLEAMGFDRALVLEVFFAC 382 (402)
Q Consensus 357 ee~~ai~rL~~lGf~~~~viqay~ac 382 (402)
...++++-|..|||.+.++-+|.-.+
T Consensus 16 ~~~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 16 AAEEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34579999999999999999888776
No 287
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=51.36 E-value=5 Score=30.39 Aligned_cols=48 Identities=29% Similarity=0.495 Sum_probs=35.3
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEE
Q 015700 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 14 ~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~ 73 (402)
.+++....||.+|.+.+ + ++.....+..+|+++..+ +-|++||.|-++
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~---~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ 71 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----G---FNTESAIAKVNGKVVLED-----DEVKDGDFVEVI 71 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----T---CSSCSSCEEETTEEECSS-----SCCCSSCCCBCS
T ss_pred EEECCCCCcHHHHHHHh----C---CCCcCEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 35666778999998765 4 555666788999998765 467888887665
No 288
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=50.86 E-value=63 Score=25.37 Aligned_cols=59 Identities=10% Similarity=0.061 Sum_probs=40.9
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCe-EEEeCCeec-CCCCchhhh--ccCCCcEEEEEEe
Q 015700 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQ-MLIHQGKVL-KDVTTLEEN--KVAENSFVVVMLT 75 (402)
Q Consensus 14 ~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~Q-rLIy~GKiL-~D~~tL~dy--gI~~gs~I~v~v~ 75 (402)
.+-|..+.||.++...|..+.+ +.+++- -|+.+...+ ..+.+++++ .-+++.+++|.-.
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~---l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k~DGfLyv~Ys 85 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLK---LVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYC 85 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTT---CCSSSCCEEEETTTBCCCTTCBHHHHHHHHCBTTEEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHhC---CCCCCeEEEEECCccCCChhhHHHHHHHHhCCCCEEEEEEe
Confidence 4567889999999999999998 665554 444466555 446676655 2336778877654
No 289
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=50.62 E-value=97 Score=24.95 Aligned_cols=71 Identities=18% Similarity=0.159 Sum_probs=52.8
Q ss_pred EEEEEeCCC---cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC--CCeEEEeCC---eecCCCCchhhhccCCCcEEEEE
Q 015700 2 KVFVKTLKG---THFEIEVKPEDKVSDVKKNIETVQGSDVYPA--SQQMLIHQG---KVLKDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 2 kI~VKtl~g---~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~--~~QrLIy~G---KiL~D~~tL~dygI~~gs~I~v~ 73 (402)
+|+|..++. ..+++.|..+.-|+-|.-+|-++.. ++. +.--|-..- -.|+-..+|..|||.-+..+++.
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~---i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ft 97 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMN---IAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFT 97 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHC---CSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEE
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcc---cccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeecc
Confidence 578887553 5688999999999999999987775 332 233443322 34677889999999999999887
Q ss_pred Ee
Q 015700 74 LT 75 (402)
Q Consensus 74 v~ 75 (402)
-.
T Consensus 98 p~ 99 (102)
T 2kmc_A 98 PQ 99 (102)
T ss_dssp EC
T ss_pred CC
Confidence 53
No 290
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=50.62 E-value=21 Score=28.82 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=30.3
Q ss_pred cCCHHHHHHHHHHHH-cCCChHHHHHHHHHhCCCHHHHHHHH
Q 015700 353 TVTPEEREAIERLEA-MGFDRALVLEVFFACNKNEELAANYL 393 (402)
Q Consensus 353 ~~t~ee~~ai~rL~~-lGf~~~~viqay~acdkneelAan~L 393 (402)
.+++|| |+.+++ .|-+|..+++|+..|+.|.--|.-+|
T Consensus 63 ~i~~ed---i~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 63 EIPEDD---IELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp CCCHHH---HHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred CCCHHH---HHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 567777 555443 69999999999999999988877665
No 291
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=49.09 E-value=20 Score=29.07 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=31.3
Q ss_pred HHHHHHHHH-cCCCCCCHHHHHHHHHHhhCCHHHHHHHH
Q 015700 173 EATVQQILD-MGGGSWDRETVIRALRAAYNNPERAVEYL 210 (402)
Q Consensus 173 e~~v~~i~~-MG~~~f~reqV~~ALrAafnNPdRAvEyL 210 (402)
++.|.-+|+ +| -.|++.++||+.+-+|.=.|+-||
T Consensus 66 ~edi~lv~~q~~---vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 66 EDDIELVMNQTG---ASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 456888877 68 999999999999999999999987
No 292
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=48.68 E-value=28 Score=26.67 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=32.0
Q ss_pred HHHHHHHc-CC-ChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015700 361 AIERLEAM-GF-DRALVLEVFFACNKNEELAANYLLDHM 397 (402)
Q Consensus 361 ai~rL~~l-Gf-~~~~viqay~acdkneelAan~L~~~~ 397 (402)
-+++|+++ |. |-...-+||-|.+.|-..|.-||-+..
T Consensus 27 lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~ 65 (80)
T 1vdl_A 27 FLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKN 65 (80)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhccc
Confidence 48889988 76 777888999999999999999998753
No 293
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=48.18 E-value=65 Score=25.14 Aligned_cols=61 Identities=10% Similarity=0.098 Sum_probs=48.7
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh-CCCCC--CCCCeEEEeCCee--cCCCCchhhhccCCCcEEEEEE
Q 015700 13 FEIEVKPEDKVSDVKKNIETVQ-GSDVY--PASQQMLIHQGKV--LKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 13 ~~ieV~~~~TV~~LK~kI~~~~-g~~~i--p~~~QrLIy~GKi--L~D~~tL~dygI~~gs~I~v~v 74 (402)
.-+.|+..+|+.++-+++.... |.. + .+.-.|..++|.. |.++.++.+-||+.-+.|-++.
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrr-v~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRR-VAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTT-BCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhccee-eCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 4578999999999999988653 322 2 1235678899988 9999999999999999998764
No 294
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=47.41 E-value=42 Score=25.53 Aligned_cols=63 Identities=25% Similarity=0.255 Sum_probs=43.5
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhhccCCCcEEEEEEec
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~v~k 76 (402)
+|+|.+.+|..+ ++....|+.|+=..|....++. -.--..+|+...-+ +-+++|+.|.++..+
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~lg~~-----~v~AkVNG~~v~L~-----~~L~~gd~VeIit~~ 69 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAVGNR-----MIGAKVDGRIVPID-----YKVKTGEIIDVLTTK 69 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCHHHHHT-----EEEEEETTEEECTT-----CBCCTTCBEEEEECC
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhhhhhcc-----eEEEEECCEEcCCC-----cccCCCCEEEEEccC
Confidence 578888899765 4567789999988887776521 12223478766543 457889988887543
No 295
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=46.81 E-value=11 Score=27.38 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=28.4
Q ss_pred hHHhhCcHHHHHHHHHHHhCccchHHHHHHHHhhCHHHHHHHHHcHH
Q 015700 277 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQT 323 (402)
Q Consensus 277 l~~Lr~~pqf~~lRq~vq~nP~lL~~~lqqi~~~nP~l~q~I~~n~e 323 (402)
++-|.++|.+. .+-+||+++. .||+|. +||+-++-...||.
T Consensus 5 ~~kl~~dPe~~----~~m~dP~~~~-~lq~i~-~NP~~~~~~~~dP~ 45 (62)
T 2lnm_A 5 ISKIMENPDVA----MAFQNPRVQA-ALMECS-ENPMNIMKYQNDKE 45 (62)
T ss_dssp HHHHTTSHHHH----HHTTSHHHHH-HHHHHT-TCGGGHHHHTTCHH
T ss_pred HHHHHcChHHH----HHcCCHHHHH-HHHHHH-HCHHHHHHHHhChH
Confidence 45567788764 3447888664 667665 68888877777885
No 296
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=46.63 E-value=35 Score=33.20 Aligned_cols=32 Identities=13% Similarity=0.343 Sum_probs=22.2
Q ss_pred cccCCHHHHHH-HHHHHHcCCChHHHHHHHHHh
Q 015700 351 AVTVTPEEREA-IERLEAMGFDRALVLEVFFAC 382 (402)
Q Consensus 351 ~i~~t~ee~~a-i~rL~~lGf~~~~viqay~ac 382 (402)
....+.+.+.. |+-|+.|||+++.+......|
T Consensus 105 lL~~s~e~L~~~l~fL~~lGl~~~~i~~ll~~~ 137 (335)
T 4fp9_B 105 LLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCC 137 (335)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCTTTTHHHHHHHC
T ss_pred hccCCHHHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 44455555443 888999999988877666655
No 297
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=46.19 E-value=47 Score=24.13 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=39.7
Q ss_pred cccCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015700 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (402)
Q Consensus 165 ~l~~g~~~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~G 213 (402)
.+...+.++.+|+.+.+|=-. ++++++..-|+.. +|.+.-+|=+|.|
T Consensus 10 ~~~~~sql~~Mve~V~~mFPq-v~~~~I~~DL~rT-gSVe~TienILeG 56 (58)
T 4g3o_A 10 NLYFQGQLNAMAHQIQEMFPQ-VPYHLVLQDLQLT-RSVEITTDNILEG 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHH-CCHHHHHHHHHTT
T ss_pred HHhhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHh-CCHHHHHHHHHcc
Confidence 345567889999999999311 7999999999998 9999999999988
No 298
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=45.91 E-value=87 Score=24.61 Aligned_cols=57 Identities=7% Similarity=-0.009 Sum_probs=40.8
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeec-CCCCchhhh--ccCCCcEEEEEEe
Q 015700 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVL-KDVTTLEEN--KVAENSFVVVMLT 75 (402)
Q Consensus 14 ~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL-~D~~tL~dy--gI~~gs~I~v~v~ 75 (402)
.+-|..+.||..+...|..+.+ + +..-|+.+...+ ..+.+++++ .-+++.+++|.-+
T Consensus 26 KflV~~~~t~~~~v~~lRkrL~---l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~Ys 85 (91)
T 3w1s_C 26 VCKISMSQSFAMVILFLKRRLK---M--DHVYCYINNSFAPSPQQNIGELWMQFKTNDELIVSYC 85 (91)
T ss_dssp EEEEETTSBHHHHHHHHHHHHT---C--SCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHhhC---C--ceEEEEECCccCCCcccHHHHHHHHhCCCCEEEEEEe
Confidence 4668889999999999999988 5 555555577654 446677655 3346778877654
No 299
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=45.91 E-value=46 Score=30.63 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015700 171 NLEATVQQILDMGGGSWDRETVIRALRA 198 (402)
Q Consensus 171 ~~e~~v~~i~~MG~~~f~reqV~~ALrA 198 (402)
.....|.-+.++| ++++++.+.++.
T Consensus 40 ~l~~~l~fL~~lG---~~~~~i~~il~~ 64 (270)
T 3m66_A 40 DIKQMLLFLKDVG---IEDNQLGAFLTK 64 (270)
T ss_dssp HTHHHHHHHHHHT---CCGGGHHHHHHH
T ss_pred hHHHHHHHHHHcC---CCHHHHHHHHHh
Confidence 4667899999999 999999888754
No 300
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=45.26 E-value=1.1e+02 Score=23.88 Aligned_cols=61 Identities=7% Similarity=0.082 Sum_probs=47.9
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh-CCCCC--CCC-CeEEEeCC--eecCCCCchhhhccCCCcEEEEEE
Q 015700 13 FEIEVKPEDKVSDVKKNIETVQ-GSDVY--PAS-QQMLIHQG--KVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 13 ~~ieV~~~~TV~~LK~kI~~~~-g~~~i--p~~-~QrLIy~G--KiL~D~~tL~dygI~~gs~I~v~v 74 (402)
.-+.|+..+|+.++-++++-.. |.- + .+. -.+..+.| +.|..+.|+.+-||+.-+.|-+..
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrR-V~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRR-VHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTT-BCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhccee-cCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 4578999999999999998543 322 2 122 35667899 899999999999999999998875
No 301
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=44.76 E-value=58 Score=33.59 Aligned_cols=59 Identities=14% Similarity=0.056 Sum_probs=41.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCC---CCCeEE--EeCCee---cCCCCchhhhccCCCcEEEEE
Q 015700 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYP---ASQQML--IHQGKV---LKDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 12 ~~~ieV~~~~TV~~LK~kI~~~~g~~~ip---~~~QrL--Iy~GKi---L~D~~tL~dygI~~gs~I~v~ 73 (402)
.+.+-|..+.||.||-..+..+.+ ++ ....|| +|+||+ +.++.+|..+.=....+|.+-
T Consensus 353 ~~~l~vpK~gtV~Dll~~l~k~~~---~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rie 419 (530)
T 2ylm_A 353 EITLYPDKHGCVRDLLEECKKAVE---LGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIE 419 (530)
T ss_dssp EEEECCBTTCBHHHHHHHHHTTCC---CCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC---CCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEEE
Confidence 466778889999999999998887 55 466777 488875 577888886532224455443
No 302
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=43.55 E-value=90 Score=25.18 Aligned_cols=45 Identities=18% Similarity=0.153 Sum_probs=35.9
Q ss_pred EEEEEeC-CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCee
Q 015700 2 KVFVKTL-KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKV 52 (402)
Q Consensus 2 kI~VKtl-~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKi 52 (402)
.|.||.- .|.++.|.|.-..+..+|..|+...+| ...-|.|-...
T Consensus 8 dvRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fG------q~ldL~y~n~E 53 (103)
T 2cu1_A 8 DVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFG------QSMDLHYTNNE 53 (103)
T ss_dssp EEEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHS------SCEEEEECSSS
T ss_pred cEEEEEEecCeEEEEeccCCccHHHHHHHHHHHhC------CeeeEEEecce
Confidence 3566654 678899999999999999999999999 35667776543
No 303
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=42.78 E-value=58 Score=25.51 Aligned_cols=34 Identities=18% Similarity=0.057 Sum_probs=25.5
Q ss_pred EEEEEeCCCcE-EEEEeC-CCCcHHHHHHHHHHHhC
Q 015700 2 KVFVKTLKGTH-FEIEVK-PEDKVSDVKKNIETVQG 35 (402)
Q Consensus 2 kI~VKtl~g~~-~~ieV~-~~~TV~~LK~kI~~~~g 35 (402)
.|+.|....+. ..|.++ ...+|.+||..|..+.+
T Consensus 8 ~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~k 43 (86)
T 2c7h_A 8 CVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREK 43 (86)
T ss_dssp EEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHT
T ss_pred EEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhC
Confidence 36667666544 457777 46799999999999887
No 304
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.05 E-value=1.3e+02 Score=23.81 Aligned_cols=49 Identities=8% Similarity=0.109 Sum_probs=34.0
Q ss_pred CcHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCCCchhhhccCCCcEEEEEEe
Q 015700 21 DKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVLKDVTTLEENKVAENSFVVVMLT 75 (402)
Q Consensus 21 ~TV~~LK~kI~~~~g~~~ip~~~QrLIy--~GKiL~D~~tL~dygI~~gs~I~v~v~ 75 (402)
.+..+|+.|...+.+ ++....+|+. .|.+++|+.-+..+ +..++.+++.
T Consensus 28 ~sL~EL~~K~~~~l~---l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~ 78 (91)
T 2eel_A 28 SSLQELISKTLDALV---IATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILE 78 (91)
T ss_dssp SSHHHHHHHHHHHTT---CSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEE
T ss_pred CCHHHHHHHHHHHhc---CCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEc
Confidence 379999999999998 7655666653 69888887655443 2445555554
No 305
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=41.78 E-value=16 Score=25.25 Aligned_cols=23 Identities=17% Similarity=0.450 Sum_probs=15.7
Q ss_pred HHHHHHHHHhCccchHHHHHHHH
Q 015700 286 FQALRTMVQANPQILQPMLQELG 308 (402)
Q Consensus 286 f~~lRq~vq~nP~lL~~~lqqi~ 308 (402)
=+++-.++.+||+++-.+|.|-.
T Consensus 19 qqqvl~ILksnPqLMAAfIkQR~ 41 (47)
T 1zoq_C 19 QQQVLNILKSNPQLMAAFIKQRT 41 (47)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCHHHHHHHHHHHH
Confidence 34566677788887777776544
No 306
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=41.71 E-value=32 Score=27.69 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=23.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhC
Q 015700 10 GTHFEIEVKPEDKVSDVKKNIETVQG 35 (402)
Q Consensus 10 g~~~~ieV~~~~TV~~LK~kI~~~~g 35 (402)
+..+.|-|.++.+..+|..+|..+.+
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~ 47 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKIS 47 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHc
Confidence 45789999999999999999999987
No 307
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=41.64 E-value=57 Score=21.62 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=31.9
Q ss_pred HHHHHHHHHHc-CCCCCCHHHHHHHHHHhhCCHHHHHHHHH
Q 015700 172 LEATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLY 211 (402)
Q Consensus 172 ~e~~v~~i~~M-G~~~f~reqV~~ALrAafnNPdRAvEyL~ 211 (402)
.+..|.+.++. | -+++.++.-|.++-.|-++||....
T Consensus 5 ~~~~i~~F~~iTg---~~~~~A~~~L~~~~wdle~Ai~~ff 42 (46)
T 1v92_A 5 RQDALREFVAVTG---AEEDRARFFLESAGWDLQIALASFY 42 (46)
T ss_dssp HHHHHHHHHHHTC---CCHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred HHHHHHHHHHHhC---cCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56789999997 6 7899999999999999999997544
No 308
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=41.10 E-value=48 Score=34.06 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=42.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC--CCeEEEeC--C--eecCCCCchhh
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA--SQQMLIHQ--G--KVLKDVTTLEE 61 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~--~~QrLIy~--G--KiL~D~~tL~d 61 (402)
|.+.|..++|....+.|+...|+.+|-..|..+.| +.. +..-|.+. + +.|+++..+-|
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lg---L~e~~~~FgL~~~~~~~~~~L~~~~~i~D 280 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLA---MEDSRNMFALFEYNGHVDKAIESRTVVAD 280 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTT---CTTCCSEEEEEEESSSCEEECCTTSBHHH
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcC---CCCCCCceEEEEEeCCeeEecCCCCchhH
Confidence 35789999999999999999999999999999999 653 33445432 2 22555555443
No 309
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=40.55 E-value=44 Score=25.13 Aligned_cols=38 Identities=26% Similarity=0.435 Sum_probs=25.0
Q ss_pred hHHhhCcHHHHHHHHHHHhCccchHHHHHHHHhhCHHHHHHHH
Q 015700 277 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 319 (402)
Q Consensus 277 l~~Lr~~pqf~~lRq~vq~nP~lL~~~lqqi~~~nP~l~q~I~ 319 (402)
+..+.++|++.++=+-+++||..+..++. ||.++..|+
T Consensus 22 i~~im~DP~~~~~lq~~~~NP~~~~k~~~-----nP~v~~~i~ 59 (71)
T 2llw_A 22 VAAIMQDPVMQSILQQAQQNPAALQEHMK-----NPEVFKKIQ 59 (71)
T ss_dssp HHHHHTCTHHHHHHHHHHHCHHHHHHHHH-----SHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHCHHHHHHHHh-----CHHHHHHHH
Confidence 33455777777766667777777665443 777777664
No 310
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=40.28 E-value=73 Score=26.51 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=43.8
Q ss_pred EEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC------CeEEE---eCCee--cCCCC--chhhhccCCCcEEE
Q 015700 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS------QQMLI---HQGKV--LKDVT--TLEENKVAENSFVV 71 (402)
Q Consensus 5 VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~------~QrLI---y~GKi--L~D~~--tL~dygI~~gs~I~ 71 (402)
|-..+...+++.+..+.|+.+|+..+.++.+ +..+ .+.|+ ++|.. |+++. ....+++ +..|+
T Consensus 14 VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~---~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~--NgRLf 88 (120)
T 2dhz_A 14 VYMPDHSYVTIRSRLSASVQDILGSVTEKLQ---YSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGI--NSHLF 88 (120)
T ss_dssp EECTTSCCCCEEECTTCCHHHHHHHHHHHST---TCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCS--SEEEE
T ss_pred EEeccCceEEEEEeccccHHHHHHHHHHHhc---cccccccccCceEEEEEccCCcEeecCCcceEEEeeccc--cceEE
Confidence 3334555677888899999999999999998 4333 67775 67743 55443 3344444 56776
Q ss_pred EEEe
Q 015700 72 VMLT 75 (402)
Q Consensus 72 v~v~ 75 (402)
+..+
T Consensus 89 vc~k 92 (120)
T 2dhz_A 89 ACTR 92 (120)
T ss_dssp EECT
T ss_pred Eeeh
Confidence 6643
No 311
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=40.01 E-value=1e+02 Score=25.29 Aligned_cols=59 Identities=10% Similarity=0.116 Sum_probs=40.4
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCCe-EEEeCCeecCCCCchhhh--cc-CCCcEEEEEEec
Q 015700 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQ-MLIHQGKVLKDVTTLEEN--KV-AENSFVVVMLTK 76 (402)
Q Consensus 15 ieV~~~~TV~~LK~kI~~~~g~~~ip~~~Q-rLIy~GKiL~D~~tL~dy--gI-~~gs~I~v~v~k 76 (402)
+-|..+.||.+|...|..+.. +.+++- -|+.++....-+.+++++ .- .++.+|+|....
T Consensus 51 flVp~~~tv~qf~~~iRkrl~---l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~ 113 (118)
T 3rui_B 51 YLVPADLTVGQFVYVIRKRIM---LPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSG 113 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHTT---CCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhC---cCCCccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEEec
Confidence 447889999999999999988 666554 444466544556777665 22 345688877643
No 312
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=45.96 E-value=6.1 Score=33.19 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=31.2
Q ss_pred HHHHHHHc-CC-ChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015700 361 AIERLEAM-GF-DRALVLEVFFACNKNEELAANYLLDH 396 (402)
Q Consensus 361 ai~rL~~l-Gf-~~~~viqay~acdkneelAan~L~~~ 396 (402)
-|++|+++ |. |-...-+||-||+.|-+.|..||-++
T Consensus 21 lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~ 58 (129)
T 2lva_A 21 LLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDE 58 (129)
Confidence 37888888 86 57788899999999999999999775
No 313
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=37.52 E-value=29 Score=28.47 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=21.7
Q ss_pred HHHHHHHHHhCccchHHHHHHHHhhCHHHHHHH
Q 015700 286 FQALRTMVQANPQILQPMLQELGKQNPHLMRLI 318 (402)
Q Consensus 286 f~~lRq~vq~nP~lL~~~lqqi~~~nP~l~q~I 318 (402)
+.+|++++..||+....||. +||||.-.|
T Consensus 58 L~qmK~~~~~nP~~a~~LL~----q~PQLAyAl 86 (109)
T 2l9b_A 58 LQKFQEWTRAHPEDAASLLE----LCPQLSFVT 86 (109)
T ss_dssp HHHHHHHHHHCHHHHHHHHH----HCHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHH----HCchHHHHH
Confidence 34788888899887776665 688887654
No 314
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=37.42 E-value=70 Score=29.86 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=38.0
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC-------CeecCCCCchhhh
Q 015700 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ-------GKVLKDVTTLEEN 62 (402)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~-------GKiL~D~~tL~dy 62 (402)
|+|-.-+|....|.|+++.|+.+|-..+..+.+ +..+.-..+|. -+.|+|...+-+.
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~---~~~~~~W~l~E~~~~l~lER~ledhE~V~ev 74 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSH---SVDDNSWTLVEHHPHLGLERCLEDHELVVQV 74 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC----------EEEEEEETTTTEEEECCTTSBHHHH
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcC---CCCCCCEEEEEECCCcccccccccchhHHHH
Confidence 556667888999999999999999988887765 33333333332 3778887766544
No 315
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=37.11 E-value=35 Score=27.52 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=27.9
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHh-------hCCHHHHHHHHHcC
Q 015700 175 TVQQILDMGGGSWDRETVIRALRAA-------YNNPERAVEYLYSG 213 (402)
Q Consensus 175 ~v~~i~~MG~~~f~reqV~~ALrAa-------fnNPdRAvEyL~~G 213 (402)
.|++.++|| |++..|.++++-- |...+.-|.=|+.+
T Consensus 30 vV~~alemG---f~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~ 72 (104)
T 2kna_A 30 MVQEAIRMG---FSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNA 72 (104)
T ss_dssp HHHHHHHTT---CCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHH
T ss_pred HHHHHHHcC---ccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 899999999 9999999998763 55555556655544
No 316
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=36.96 E-value=36 Score=24.26 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=31.4
Q ss_pred cccCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCCC
Q 015700 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215 (402)
Q Consensus 165 ~l~~g~~~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~GIP 215 (402)
.++.+..+.+.+.+ |+|+-+..||+..-+|-.+|.+.| ||.
T Consensus 5 ~~~~~~~l~~~l~~--------~E~~~i~~aL~~~~gn~~~aA~~L--Gis 45 (63)
T 3e7l_A 5 YLLKIKELKEAKKE--------FEKIFIEEKLREYDYDLKRTAEEI--GID 45 (63)
T ss_dssp TTTTCSCHHHHHHH--------HHHHHHHHHHHHTTTCHHHHHHHH--TCC
T ss_pred HhccCCCHHHHHHH--------HHHHHHHHHHHHhCCCHHHHHHHH--CcC
Confidence 34455556665553 789999999999999999999988 554
No 317
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=36.94 E-value=1.2e+02 Score=28.80 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=45.9
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC-------CeecCCCCchhhh----ccCCCcEEE
Q 015700 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ-------GKVLKDVTTLEEN----KVAENSFVV 71 (402)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~-------GKiL~D~~tL~dy----gI~~gs~I~ 71 (402)
|+|-..+|....|.|++++|+.+|-..+..+.++ ....-..+|. -+.|.|...|-+. .......++
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~---~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~ 110 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHC---GYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLI 110 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCC---CCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCC---CCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEE
Confidence 4555668889999999999999999988888773 3233222321 3678888776654 344455554
Q ss_pred EE
Q 015700 72 VM 73 (402)
Q Consensus 72 v~ 73 (402)
+.
T Consensus 111 f~ 112 (281)
T 4gmv_A 111 FM 112 (281)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 318
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=36.72 E-value=86 Score=26.29 Aligned_cols=58 Identities=19% Similarity=0.246 Sum_probs=40.8
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEE-eCCeec-CCCCchhhh--ccC-CCcEEEEEEe
Q 015700 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI-HQGKVL-KDVTTLEEN--KVA-ENSFVVVMLT 75 (402)
Q Consensus 15 ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLI-y~GKiL-~D~~tL~dy--gI~-~gs~I~v~v~ 75 (402)
+-|..+.||.+|...|..+.+ +.+++--.+ |.++.+ .-+.+++++ .-+ ++.+++|..+
T Consensus 57 flVp~~~tv~qf~~~iRkrL~---l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys 119 (130)
T 2zjd_A 57 FLVPDHVNMSELIKIIRRRLQ---LNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYA 119 (130)
T ss_dssp EEEETTCBHHHHHHHHHHHHT---CCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHhC---CCCCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEEe
Confidence 457788999999999999998 666655444 766555 456777766 222 4668887654
No 319
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=36.68 E-value=1.2e+02 Score=24.78 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=40.4
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCCCchhhh--cc-CCCcEEEEEEec
Q 015700 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVLKDVTTLEEN--KV-AENSFVVVMLTK 76 (402)
Q Consensus 15 ieV~~~~TV~~LK~kI~~~~g~~~ip~~~-QrLIy~GKiL~D~~tL~dy--gI-~~gs~I~v~v~k 76 (402)
+-|..+.||.+|...|..+.+ +.+++ .-|+.++....-+.+|.++ .. .++.+|+|....
T Consensus 49 flVp~~~tv~~f~~~iRk~l~---l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~ 111 (117)
T 1eo6_A 49 YLVPSDITVAQFMWIIRKRIQ---LPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSG 111 (117)
T ss_dssp EEEETTSBHHHHHHHHHHHHT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred EEcCCCCCHHHHHHhhHHhhc---CCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEeC
Confidence 345668899999999999988 65554 4554455544557777766 22 346788887753
No 320
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=36.48 E-value=1.2e+02 Score=24.88 Aligned_cols=58 Identities=14% Similarity=0.180 Sum_probs=42.0
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCCCchhhh--cc-CCCcEEEEEEe
Q 015700 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVLKDVTTLEEN--KV-AENSFVVVMLT 75 (402)
Q Consensus 15 ieV~~~~TV~~LK~kI~~~~g~~~ip~~~-QrLIy~GKiL~D~~tL~dy--gI-~~gs~I~v~v~ 75 (402)
+-|..+.||.+|...|..+.+ +.+++ .-|+.++....-+.+++++ .- .++.+|+|...
T Consensus 52 flVp~~~tv~qf~~~iRkrl~---l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Ys 113 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQ---LEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYS 113 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHT---CCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhC---CCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEEe
Confidence 457789999999999999998 66665 4555577766667787766 23 34568887764
No 321
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=36.25 E-value=1.1e+02 Score=24.75 Aligned_cols=57 Identities=12% Similarity=0.075 Sum_probs=38.9
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCCCchhhh--cc-CCCcEEEEEE
Q 015700 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVLKDVTTLEEN--KV-AENSFVVVML 74 (402)
Q Consensus 15 ieV~~~~TV~~LK~kI~~~~g~~~ip~~~-QrLIy~GKiL~D~~tL~dy--gI-~~gs~I~v~v 74 (402)
+-|..+.||.+|...|..+.+ +.+++ .-|+.++....-+.+|.++ .. .++.+|+|..
T Consensus 48 flVp~~~tv~~~~~~iRk~l~---l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Y 108 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIH---LRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAY 108 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred EEeCCCCcHHHHHHHHHHHhc---CCCCCcEEEEECCEecCccChHHHHHHHcCCCCCEEEEEE
Confidence 445668899999999999988 65554 4554555544557777766 22 2466888765
No 322
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=35.97 E-value=96 Score=25.87 Aligned_cols=59 Identities=10% Similarity=0.078 Sum_probs=41.1
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCCe-EEEeCCeecCCCCchhhh--ccC-CCcEEEEEEec
Q 015700 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQ-MLIHQGKVLKDVTTLEEN--KVA-ENSFVVVMLTK 76 (402)
Q Consensus 15 ieV~~~~TV~~LK~kI~~~~g~~~ip~~~Q-rLIy~GKiL~D~~tL~dy--gI~-~gs~I~v~v~k 76 (402)
+-|..+.||.+|...|..+.. +.+++- -|+.++....-+.+++++ .-+ ++.+|+|..+.
T Consensus 57 flVp~~~tv~qf~~~IRkrl~---L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys~ 119 (125)
T 3m95_A 57 YLVPSDLTVGQFYFLIRKRIH---LRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSD 119 (125)
T ss_dssp EEEETTSBHHHHHHHHHHHTT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEES
T ss_pred EEcCCCCEeeeehhhhHhhcC---CCccccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEecC
Confidence 457789999999999999988 666654 444466544557777766 233 56688877653
No 323
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=34.17 E-value=1.3e+02 Score=24.89 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=45.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHH-hCCC----CCCCCCeEEEeCCeecC--CCCchhhhccCCCcEEEEE
Q 015700 13 FEIEVKPEDKVSDVKKNIETV-QGSD----VYPASQQMLIHQGKVLK--DVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 13 ~~ieV~~~~TV~~LK~kI~~~-~g~~----~ip~~~QrLIy~GKiL~--D~~tL~dygI~~gs~I~v~ 73 (402)
+.+-|.++.+.++|-+.+-.- ++.+ .|.-++-.+..+|+... .+++|.+.||..++.|.+.
T Consensus 40 ~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 40 FALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp EEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred eeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 678999999999987766533 3311 13444557788999984 4789999999999988776
No 324
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=33.61 E-value=1.3e+02 Score=25.81 Aligned_cols=64 Identities=13% Similarity=0.209 Sum_probs=44.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCe----EEEe-----------------CCeec-CCCCchhhhccCCCcE
Q 015700 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQ----MLIH-----------------QGKVL-KDVTTLEENKVAENSF 69 (402)
Q Consensus 12 ~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~Q----rLIy-----------------~GKiL-~D~~tL~dygI~~gs~ 69 (402)
.+.|-...+.|+.+|-..|.+.... .+...- ++|| .|+.- +|++||.+++..-||.
T Consensus 55 ElQIYTW~daTLrEL~~Lvk~~~p~--ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDy 132 (143)
T 4a6q_A 55 ELQIYTWMDATLKELTSLVKEVYPE--ARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDY 132 (143)
T ss_dssp CEEEEECTTCBHHHHHHHHHHHCGG--GGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCE
T ss_pred eeEEeeCCCCCHHHHHHHHHHhCcc--ccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCE
Confidence 3667777899999999999887541 111122 3333 23333 4689999999999999
Q ss_pred EEEEEecC
Q 015700 70 VVVMLTKS 77 (402)
Q Consensus 70 I~v~v~k~ 77 (402)
|.|-+..+
T Consensus 133 idvaI~pP 140 (143)
T 4a6q_A 133 LDIAITPP 140 (143)
T ss_dssp EEEEEECG
T ss_pred EEEEEeCC
Confidence 99988643
No 325
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.37 E-value=68 Score=23.18 Aligned_cols=39 Identities=28% Similarity=0.296 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHc-CCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015700 171 NLEATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (402)
Q Consensus 171 ~~e~~v~~i~~M-G~~~f~reqV~~ALrAafnNPdRAvEyL~~ 212 (402)
..++.|.+.|++ | -+++.++.-|.++-+|-++||...+.
T Consensus 14 ~~~e~i~qF~~iTg---~~~~~A~~~Le~~~WnLe~Av~~ff~ 53 (62)
T 2dal_A 14 ALKGLIQQFTTITG---ASESVGKHMLEACNNNLEMAVTMFLD 53 (62)
T ss_dssp HHHHHHHHHHHHTC---CCHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 456789999997 6 78999999999999999999985554
No 326
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=32.49 E-value=30 Score=32.47 Aligned_cols=55 Identities=16% Similarity=0.269 Sum_probs=40.3
Q ss_pred hHHhhCcHHHHHHHHHHHhCcc--chHHHHHHHHhhCHHHHHHHHHcHHHHHHHhcC
Q 015700 277 LDFLRNSQQFQALRTMVQANPQ--ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 331 (402)
Q Consensus 277 l~~Lr~~pqf~~lRq~vq~nP~--lL~~~lqqi~~~nP~l~q~I~~n~e~Fl~~l~~ 331 (402)
.+||++.-...+|++|++.++. -|.-=+..|..-+|+|+..|..||..++.++.+
T Consensus 19 ~~Fl~~~~Y~~~i~~~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~ 75 (279)
T 1ltl_A 19 EEFFSLQDYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQ 75 (279)
T ss_dssp HHHTTSHHHHHHHHHHHHHTTSCCEEEEEHHHHHHHCTTHHHHHHHSHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHhhCCCCeEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHH
Confidence 4678764345788888854443 333335677788999999999999999999754
No 327
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=31.86 E-value=1e+02 Score=24.41 Aligned_cols=57 Identities=11% Similarity=0.064 Sum_probs=38.5
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeCCeec-CCCCchhhh--ccCCCcEEEEEEe
Q 015700 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVL-KDVTTLEEN--KVAENSFVVVMLT 75 (402)
Q Consensus 14 ~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~GKiL-~D~~tL~dy--gI~~gs~I~v~v~ 75 (402)
.+-|..+.||.+|...|..+.+ +. ..-|+.+...+ ..+.+++++ .-+++.+++|.-+
T Consensus 31 KflV~~~~t~~~~~~~lRkrL~---l~--alFlyvn~~~~Ps~d~~m~~LY~~~kdDGfLyi~Ys 90 (96)
T 1wz3_A 31 KFKVSGSDKFANVIDFLRRQLH---SD--SLFVYVNSAFSPNPDESVIDLYNNFGFDGKLVVNYA 90 (96)
T ss_dssp EEEEETTSBTHHHHHHHHHHHT---CS--SCEEEEEEEECCCTTSBHHHHHHHHCBTTBEEEEEE
T ss_pred EEEeCCCCcHHHHHHHHHHhcC---Cc--eEEEEECCcccCChhhHHHHHHHHhCCCCEEEEEEe
Confidence 4567788999999999999988 55 45553344244 456777665 3344667877654
No 328
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=30.84 E-value=26 Score=25.12 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=21.1
Q ss_pred CChHHHHHHHHHhCCCHHHHHHHH
Q 015700 370 FDRALVLEVFFACNKNEELAANYL 393 (402)
Q Consensus 370 f~~~~viqay~acdkneelAan~L 393 (402)
|.+..+.+|+..|++|...||..|
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 457889999999999999999876
No 329
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=30.22 E-value=92 Score=32.98 Aligned_cols=46 Identities=9% Similarity=-0.000 Sum_probs=38.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEe
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH 48 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy 48 (402)
|.+.|..++|....+.|+...|+.+|-..|..+.|. ...+..-|.|
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL--~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISL--KDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTC--SSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCC--cccccceeEE
Confidence 467899999999999999999999999999999993 2344556655
No 330
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=29.58 E-value=1.3e+02 Score=26.15 Aligned_cols=56 Identities=11% Similarity=0.194 Sum_probs=37.5
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCC---------CCCeEEEeCCeecCCCCchhhhccCCCcEEEEE
Q 015700 14 EIEVKPEDKVSDVKKNIETVQGSDVYP---------ASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (402)
Q Consensus 14 ~ieV~~~~TV~~LK~kI~~~~g~~~ip---------~~~QrLIy~GKiL~D~~tL~dygI~~gs~I~v~ 73 (402)
.++++. .||.+|.+.+...+.. +. .....+..||+......- .++-|++||.|.++
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~--l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~ 81 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPA--LKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLF 81 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGG--GHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEE
T ss_pred eEEECC-CcHHHHHHHHHhhChh--hhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEE
Confidence 345655 8999999999877420 10 134567788888765322 24568999999887
No 331
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=29.42 E-value=49 Score=34.15 Aligned_cols=70 Identities=11% Similarity=0.242 Sum_probs=52.4
Q ss_pred EEEEeCC--CcEEE----EEeCCCCcHHHHHHHHHHHhCCCCCCCCCeEEEeC----C--eecC-CCCchhhh--ccCCC
Q 015700 3 VFVKTLK--GTHFE----IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ----G--KVLK-DVTTLEEN--KVAEN 67 (402)
Q Consensus 3 I~VKtl~--g~~~~----ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QrLIy~----G--KiL~-D~~tL~dy--gI~~g 67 (402)
|++|..+ .+++. +-|+.+.+|.+|-..|.+..| +|++.--.+|. + ..|+ .+.+|.+. .|.+|
T Consensus 133 lFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g---~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~G 209 (530)
T 2ylm_A 133 LFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAG---FIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDG 209 (530)
T ss_dssp EEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHT---CCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTT
T ss_pred EEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcC---CCCCCceEEEEecCCCceeEcccccccHHHHHhcccCC
Confidence 5666543 33433 578889999999999999999 88876555553 3 3467 47899999 99999
Q ss_pred cEEEEEEe
Q 015700 68 SFVVVMLT 75 (402)
Q Consensus 68 s~I~v~v~ 75 (402)
+.|++-..
T Consensus 210 dII~fQ~~ 217 (530)
T 2ylm_A 210 DIIVFQKD 217 (530)
T ss_dssp EEEEEEEC
T ss_pred CEEEEEec
Confidence 98877653
No 332
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=29.05 E-value=28 Score=26.82 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=19.6
Q ss_pred ChHHHHHHHHHhCCCHHHHHHHH
Q 015700 371 DRALVLEVFFACNKNEELAANYL 393 (402)
Q Consensus 371 ~~~~viqay~acdkneelAan~L 393 (402)
.+..+.+++..|++|...||..|
T Consensus 42 Er~~I~~aL~~~~GN~s~AA~~L 64 (81)
T 1umq_A 42 RWEHIQRIYEMCDRNVSETARRL 64 (81)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHh
Confidence 35677899999999999999876
No 333
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157} SCOP: c.38.1.0
Probab=28.69 E-value=57 Score=28.60 Aligned_cols=21 Identities=14% Similarity=0.234 Sum_probs=19.1
Q ss_pred ccccCCHHHHHHHHHHHHcCC
Q 015700 350 QAVTVTPEEREAIERLEAMGF 370 (402)
Q Consensus 350 ~~i~~t~ee~~ai~rL~~lGf 370 (402)
..+.|++||.+++++|.++|.
T Consensus 123 ~~V~v~~ed~~~lk~L~~~Gv 143 (168)
T 3eye_A 123 SKVYVDDQDLTDLRFIKQRGV 143 (168)
T ss_dssp TTEEECHHHHHHHHHHHHTTC
T ss_pred ccEeeCHHHHHHHHHHHHCCC
Confidence 368999999999999999995
No 334
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=27.54 E-value=64 Score=23.92 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=26.3
Q ss_pred cCCHHHHHHHHHHHH-cCCChHHHHHHHHHh
Q 015700 353 TVTPEEREAIERLEA-MGFDRALVLEVFFAC 382 (402)
Q Consensus 353 ~~t~ee~~ai~rL~~-lGf~~~~viqay~ac 382 (402)
.||+-|++.|..+.. .||+.+++..|+.-|
T Consensus 17 ~ls~~e~~~i~~w~~~~~~~~elI~~A~~~a 47 (78)
T 2zc2_A 17 MLSPFELEDLQKTVSDDKTDPDLVRSALREA 47 (78)
T ss_dssp CCCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 478999999988764 799999999999888
No 335
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=26.83 E-value=37 Score=30.93 Aligned_cols=26 Identities=12% Similarity=0.265 Sum_probs=23.5
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhh
Q 015700 172 LEATVQQILDMGGGSWDRETVIRALRAAY 200 (402)
Q Consensus 172 ~e~~v~~i~~MG~~~f~reqV~~ALrAaf 200 (402)
.++++.-|+.+| |.+.++.+|++...
T Consensus 164 ~~ea~~AL~~LG---y~~~ea~~av~~~~ 189 (212)
T 2ztd_A 164 RSPVVEALVGLG---FAAKQAEEATDTVL 189 (212)
T ss_dssp HHHHHHHHHHTT---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 467999999999 99999999999874
No 336
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=26.77 E-value=61 Score=28.45 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=36.1
Q ss_pred chHHHHHHHH-HHcCCCCCCH---HHHHHHHHHhhCC-HHHHHHHHHcC--CCCC
Q 015700 170 SNLEATVQQI-LDMGGGSWDR---ETVIRALRAAYNN-PERAVEYLYSG--IPEQ 217 (402)
Q Consensus 170 ~~~e~~v~~i-~~MG~~~f~r---eqV~~ALrAafnN-PdRAvEyL~~G--IP~~ 217 (402)
+..+..|+.| .+-| |.+ ++|.-||+..-.+ |..-++||..| ||.+
T Consensus 61 s~~~~Lv~~l~~e~G---i~~~fs~~Ii~ALs~tsM~~p~~VL~~l~~GkgiP~N 112 (168)
T 3cz6_A 61 SQAEKLVQDLCDETG---IRKNFSTSILTCLSGDLMVFPRYFLNMFKDNVNPPPN 112 (168)
T ss_dssp TCHHHHHHHHHHHHC---BCHHHHHHHHHHTTTCGGGHHHHHHHHHHHTCSSCTT
T ss_pred hhHHHHHHHHHHHhC---cccccHHHHHHHhcCCcccCHHHHHHHHHhCCCCCCC
Confidence 4567788888 6788 865 5777899999999 99888999997 7765
No 337
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=26.33 E-value=89 Score=29.71 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=37.3
Q ss_pred cccCCHHHHHHHHHHHHc----C----CChHHHHHHHHHhCCCHHHHHHHHh
Q 015700 351 AVTVTPEEREAIERLEAM----G----FDRALVLEVFFACNKNEELAANYLL 394 (402)
Q Consensus 351 ~i~~t~ee~~ai~rL~~l----G----f~~~~viqay~acdkneelAan~L~ 394 (402)
.-.||+++.++|++|+++ | .|....+.=+.||+.|.+.|...|-
T Consensus 32 ~~~lt~~q~~~l~~lR~~l~~~~~~~~~dD~~LLRFLRArkfdv~kA~~mL~ 83 (320)
T 3q8g_A 32 PGNLTKEQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFV 83 (320)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 457999999999988765 4 5677888889999999999998774
No 338
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=26.22 E-value=72 Score=27.76 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=19.1
Q ss_pred ccccCCHHHHHHHHHHHHcCC
Q 015700 350 QAVTVTPEEREAIERLEAMGF 370 (402)
Q Consensus 350 ~~i~~t~ee~~ai~rL~~lGf 370 (402)
..+.|++||.+++++|.++|.
T Consensus 121 ~~v~v~~ed~~~lk~L~~~Gv 141 (165)
T 1vsq_C 121 NAVSVDEKDIEAFKKLNARGI 141 (165)
T ss_dssp SSCEECHHHHHHHHHHHHTTC
T ss_pred ccEeeCHHHHHHHHHHHHCCC
Confidence 468999999999999999994
No 339
>1pgy_A SWA2P; UBA, ubiquitin, auxilin, ubiquitin-associated domain, protein binding; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=26.18 E-value=71 Score=21.95 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=22.5
Q ss_pred HHHHHH-HHHHHHcCCChHHHHHHHHHhCCCH
Q 015700 356 PEEREA-IERLEAMGFDRALVLEVFFACNKNE 386 (402)
Q Consensus 356 ~ee~~a-i~rL~~lGf~~~~viqay~acdkne 386 (402)
.|.++. |.||+.||.+-+.+..-|.---.=|
T Consensus 4 DEvkDmEiAkLMSLGl~id~A~~~Ye~gi~ye 35 (47)
T 1pgy_A 4 DEVKDMEIARLMSLGLSIEEATEFYENDVTYE 35 (47)
T ss_dssp HHHHHHHHHHHHHHCCCSHHHHHHHHHHCSSH
T ss_pred hHHHHHHHHHHHHccCChhhHHHHHHcCchHH
Confidence 344444 9999999999999888886544433
No 340
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=26.04 E-value=95 Score=33.31 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=39.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCC--------CeEEEeCCe--e----cCC--CCchhhhccCCCcEEEEE
Q 015700 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPAS--------QQMLIHQGK--V----LKD--VTTLEENKVAENSFVVVM 73 (402)
Q Consensus 13 ~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~--------~QrLIy~GK--i----L~D--~~tL~dygI~~gs~I~v~ 73 (402)
..+.++.+.|+.+|-+.|..+.... +..- ..+++|... . .++ +++|+++||++|+.|+|.
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 714 QNIQFSPSAKLQEVLDYLTNSASLQ-MKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp EEEEECTTSBHHHHHHHHHHCTTTC-CSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred EEEEECCcChHHHHHHHHHhhhccC-cccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 4577887889999988888853300 2111 246666532 1 112 578999999999998875
No 341
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=25.66 E-value=1.2e+02 Score=23.84 Aligned_cols=41 Identities=15% Similarity=0.265 Sum_probs=34.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCe-EEEeCCeec
Q 015700 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQ-MLIHQGKVL 53 (402)
Q Consensus 10 g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~Q-rLIy~GKiL 53 (402)
...+.|.|+...|=.++|+.|+..++ +.+... .|++.||.=
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~---VkV~~VnT~~~~gK~k 68 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFE---VEVEVVNTLVVKGKVK 68 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSC---CCCCEEEEEEECCCBC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcC---CceEEEEEEEeCCcee
Confidence 36899999999999999999999999 777776 456788743
No 342
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=25.03 E-value=1.2e+02 Score=24.47 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=32.4
Q ss_pred CcHHHHHHHHHHHhCCCCCCCC--CeEEE--eCCeecCCCCchhhhccCCCcEEEEEE
Q 015700 21 DKVSDVKKNIETVQGSDVYPAS--QQMLI--HQGKVLKDVTTLEENKVAENSFVVVML 74 (402)
Q Consensus 21 ~TV~~LK~kI~~~~g~~~ip~~--~QrLI--y~GKiL~D~~tL~dygI~~gs~I~v~v 74 (402)
.+..+|+.|...+.+ ++.. ..+|+ ..|..++|+.-+..+ .++ ++.+++
T Consensus 37 ~SL~EL~~K~~~~l~---l~~~~~~~~lvLeeDGT~VddEeYF~tL--p~n-T~lmvL 88 (100)
T 1f2r_I 37 SSLEELRSKACELLA---IDKSLTPITLVLAEDGTIVDDDDYFLCL--PSN-TKFVAL 88 (100)
T ss_dssp SSHHHHHHHHHHHHC---CCGGGCSCEEEESSSCCBCCSSSSSSSS--CSC-CEEEEE
T ss_pred CCHHHHHHHHHHHhc---cCCCCCceEEEEeeCCcEEechhHhhcC--CCC-CEEEEE
Confidence 379999999999998 7542 35554 479999887665543 244 444444
No 343
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=24.86 E-value=72 Score=25.13 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=24.3
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHH
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKN 29 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~k 29 (402)
+|+|...+|+.++|++....||.+.-.+
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~ 29 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALRD 29 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHH
Confidence 7899999999999999999999885543
No 344
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=24.66 E-value=1.5e+02 Score=23.75 Aligned_cols=54 Identities=0% Similarity=-0.009 Sum_probs=32.6
Q ss_pred CcHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee--cCC-CCchhhhccCCCcEEEEEEec
Q 015700 21 DKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV--LKD-VTTLEENKVAENSFVVVMLTK 76 (402)
Q Consensus 21 ~TV~~LK~kI~~~~g~~~ip~~~QrLIy~G---Ki--L~D-~~tL~dygI~~gs~I~v~v~k 76 (402)
.+...|+.+|...+.. +......|.|.. -. +.+ +.....+.......+.|.++.
T Consensus 42 ~s~~~L~~~V~~lFp~--l~~~~f~l~Y~DedGDlItiSsDeEL~~Al~~~~~~~lRlyVke 101 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPA--LRPGGFQAHYRAERGDLVAFSSDEELTMAMSYVKDDIFRIYIKE 101 (102)
T ss_dssp CHHHHHHHHHHHHCTT--SCSSCEEEEEECTTCCEEEECSHHHHHHHHHHCCSSEEEEEEEE
T ss_pred ccHHHHHHHHHHHccc--cCCCcEEEEEECCCCCEEEecCHHHHHHHHHhcCCCeEEEEEEc
Confidence 4799999999999642 444567777754 22 233 222223334345677777754
No 345
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1
Probab=24.02 E-value=74 Score=27.62 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=19.1
Q ss_pred ccccCCHHHHHHHHHHHHcCC
Q 015700 350 QAVTVTPEEREAIERLEAMGF 370 (402)
Q Consensus 350 ~~i~~t~ee~~ai~rL~~lGf 370 (402)
..+.+++||.+++++|.++|.
T Consensus 119 ~~v~v~~ed~~~l~~L~~~Gv 139 (163)
T 1ble_A 119 KSVSVTEQDIKAFETLSDKGV 139 (163)
T ss_dssp SSBEECHHHHHHHHHHHHTTC
T ss_pred ccEeeCHHHHHHHHHHHHCCC
Confidence 468999999999999999994
No 346
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=23.66 E-value=1e+02 Score=19.95 Aligned_cols=26 Identities=27% Similarity=0.593 Sum_probs=18.7
Q ss_pred HHHHHHHhcCCCCCCCCcccccccccCCccccCCHHHHHH-HHHHHH
Q 015700 322 QTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREA-IERLEA 367 (402)
Q Consensus 322 ~e~Fl~~l~~~~~~~~g~~~~~~~~~~~~~i~~t~ee~~a-i~rL~~ 367 (402)
|.+|..+|+.+ .||+|.+.. |++|++
T Consensus 6 QnaFYevLh~~--------------------nLtEeQrn~yI~slkd 32 (34)
T 1l6x_B 6 QRRFYEALHDP--------------------NLNEEQRNAKIKSIRD 32 (34)
T ss_dssp HHHHHHHHHCT--------------------TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--------------------CCCHHHHHhHHHHHhc
Confidence 45788888643 468888877 888864
No 347
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=23.57 E-value=57 Score=28.44 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=22.1
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHH
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKN 29 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~k 29 (402)
+|+|+ ++|+.+.++++++.||.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 5 HIELT-INGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHH
Confidence 56666 7899999999999999986544
No 348
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=23.14 E-value=58 Score=28.32 Aligned_cols=27 Identities=19% Similarity=0.427 Sum_probs=22.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHH
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKK 28 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~ 28 (402)
|+|+++ ++|+.+.++++++.|+.++-.
T Consensus 4 ~~i~~~-vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 4 ITINLN-LNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp EEEEEE-ETTEEEEEEECSSSBHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCCHHHHHH
Confidence 356776 789999999999999998643
No 349
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=22.96 E-value=1e+02 Score=25.09 Aligned_cols=68 Identities=18% Similarity=0.257 Sum_probs=42.9
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC-------CCeEEE---eCCee--cCCC-CchhhhccCCCcE
Q 015700 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA-------SQQMLI---HQGKV--LKDV-TTLEENKVAENSF 69 (402)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~-------~~QrLI---y~GKi--L~D~-~tL~dygI~~gs~ 69 (402)
|.+-..+|-.+.+++..+.|+.+||+.+.++-.+ +|- +.=.+. ..|.+ |.|+ +.|.++... -..
T Consensus 22 v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~--~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf-~pi 98 (108)
T 2v1y_A 22 VECLLPNGMIVTLECLREATLITIKHELFKEARK--YPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF-QPF 98 (108)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGG--STTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS-SSE
T ss_pred EEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHh--CchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc-ceE
Confidence 3344458888999999999999999999888442 221 111221 12444 7664 788888765 234
Q ss_pred EEEE
Q 015700 70 VVVM 73 (402)
Q Consensus 70 I~v~ 73 (402)
+.|+
T Consensus 99 Lklv 102 (108)
T 2v1y_A 99 LKVI 102 (108)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4444
No 350
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=22.87 E-value=59 Score=28.18 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=22.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHH
Q 015700 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKN 29 (402)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~~LK~k 29 (402)
|.|+|+ ++|+.+.++++++.||.++-..
T Consensus 10 m~i~~~-ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 10 MRISAT-INGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 456666 6899999999999999986544
No 351
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=22.43 E-value=44 Score=30.09 Aligned_cols=25 Identities=12% Similarity=0.347 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 015700 172 LEATVQQILDMGGGSWDRETVIRALRAA 199 (402)
Q Consensus 172 ~e~~v~~i~~MG~~~f~reqV~~ALrAa 199 (402)
.++++.-|+.+| |.+.++.+|++..
T Consensus 160 ~~ea~~AL~~LG---y~~~ea~~av~~~ 184 (203)
T 1cuk_A 160 EQEAVARLVALG---YKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHHHHHHT---CCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHh
Confidence 578999999999 9999999999986
No 352
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.29 E-value=2.1e+02 Score=20.68 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=36.0
Q ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015700 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (402)
Q Consensus 170 ~~~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~G 213 (402)
+.++.+|..+.+|=-. ++++++..-|+-.- |.+.-+|=+|.|
T Consensus 11 ~q~~~mv~~V~~mfP~-vp~~~I~~DL~~Tg-sVe~TienILeG 52 (58)
T 2ejs_A 11 SQLNAMAHQIQEMFPQ-VPYHLVLQDLQLTR-SVEITTDNILEG 52 (58)
T ss_dssp CHHHHHHHHHHHHCCS-SCHHHHHHHHHHHC-SHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCC-CCHHHHHHHHHHhC-CHHHHHHHHHhc
Confidence 5688999999999211 79999999998765 999999999988
No 353
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.25 E-value=2e+02 Score=21.02 Aligned_cols=42 Identities=14% Similarity=0.148 Sum_probs=36.1
Q ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015700 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (402)
Q Consensus 170 ~~~e~~v~~i~~MG~~~f~reqV~~ALrAafnNPdRAvEyL~~G 213 (402)
++++.+|..+.+|=-. ++++.+..-|+-. +|.+.-+|=+|.|
T Consensus 11 ~ql~~mv~~V~~mfP~-vp~~~I~~DL~~T-gsVe~TienILeG 52 (61)
T 2ekf_A 11 VQLATLAQRVKEVLPH-VPLGVIQRDLAKT-GCVDLTITNLLEG 52 (61)
T ss_dssp CCHHHHHHHHHHHCSS-SCHHHHHHHHHTS-CCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHcCC-CCHHHHHHHHHHh-CCHHHHHHHHHcC
Confidence 5688999999999211 7999999999876 5999999999998
No 354
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=22.23 E-value=70 Score=24.37 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=28.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCC-----CCCeEEEeCC
Q 015700 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYP-----ASQQMLIHQG 50 (402)
Q Consensus 12 ~~~ieV~~~~TV~~LK~kI~~~~g~~~ip-----~~~QrLIy~G 50 (402)
.+.|-|.++.+..+|..+|..+.+ .. ....+|-|+.
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~---~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKIS---NTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTT---TTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHc---ccccccccceeEEEEEc
Confidence 578899999999999999999998 42 2445665643
No 355
>3p3v_A PTS system, N-acetylgalactosamine-specific IIB CO; PTS IIB component, phosphotransferase, sugar transport, STRU genomics; HET: PGE; 1.65A {Streptococcus pyogenes serotype M1} SCOP: c.38.1.0
Probab=22.12 E-value=1e+02 Score=26.79 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=19.1
Q ss_pred ccccCCHHHHHHHHHHHH-cCC
Q 015700 350 QAVTVTPEEREAIERLEA-MGF 370 (402)
Q Consensus 350 ~~i~~t~ee~~ai~rL~~-lGf 370 (402)
..+.+++||.+++++|.+ +|.
T Consensus 120 ~~v~v~~ed~~~lk~L~~~~Gv 141 (163)
T 3p3v_A 120 QFISLGETDKSAIRCLAHDHHV 141 (163)
T ss_dssp SSBEECHHHHHHHHHHHHTSCC
T ss_pred ccEeeCHHHHHHHHHHHHhcCC
Confidence 468999999999999999 894
No 356
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=21.65 E-value=1.6e+02 Score=24.30 Aligned_cols=54 Identities=2% Similarity=0.011 Sum_probs=32.5
Q ss_pred CcHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee--cC-CCCchhhhccCCCcEEEEEEec
Q 015700 21 DKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV--LK-DVTTLEENKVAENSFVVVMLTK 76 (402)
Q Consensus 21 ~TV~~LK~kI~~~~g~~~ip~~~QrLIy~G---Ki--L~-D~~tL~dygI~~gs~I~v~v~k 76 (402)
.+...|+.+|...+.. +......|.|.. -. +. |+.....+.......+.|.++.
T Consensus 57 ~s~~~L~~kV~~lFp~--L~~~~f~l~YkDEdGDlItISsDeEL~~Al~~~~~~~lRlyVke 116 (117)
T 2ktr_A 57 GPSERLLSRVAVLFPA--LRPGGFQAHYRAERGDLVAFSSDEELTMAMSYVKDDIFRIYIKE 116 (117)
T ss_dssp CHHHHHHHHHHHHCTT--SCSSCEEEEEECTTCCEEEECSHHHHHHHHHHCCSSEEEEEEEE
T ss_pred CCHHHHHHHHHHHccc--cCCCcEEEEEECCCCCEEEecCHHHHHHHHHhcCCCeEEEEEEe
Confidence 4899999999999842 445567777753 22 23 2222233333335677777754
No 357
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=21.52 E-value=28 Score=32.40 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhCccchHHHHHHHHhhCHHHHHHHHHcHHHHHHHhcC
Q 015700 285 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 331 (402)
Q Consensus 285 qf~~lRq~vq~nP~lL~~~lqqi~~~nP~l~q~I~~n~e~Fl~~l~~ 331 (402)
...+||+++..+-.-|.-=+..|..-+|+|+..|..||..++.++.+
T Consensus 30 Y~~~i~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~ 76 (268)
T 2vl6_A 30 YIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEG 76 (268)
T ss_dssp THHHHHHHHHTTCCCEEEEHHHHHHHCHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEEEHHHHHhhhHHHHHHHHHCHHHHHHHHHH
Confidence 35688888887766666556778888999999999999988888643
No 358
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2
Probab=21.51 E-value=1.7e+02 Score=23.98 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=29.6
Q ss_pred cCCHHHHHHHHHHHH-cCCChHHHHHHHHHhC-CCHHHHHH
Q 015700 353 TVTPEEREAIERLEA-MGFDRALVLEVFFACN-KNEELAAN 391 (402)
Q Consensus 353 ~~t~ee~~ai~rL~~-lGf~~~~viqay~acd-kneelAan 391 (402)
.++++|++.+.++.. +|+++....+....|+ .....+..
T Consensus 34 ~v~~~E~~~l~~~l~~lgl~~~e~~~l~~~~~~~~~~~~~~ 74 (133)
T 2h5n_A 34 KIKPAEIAVMTREFMRFGILQDQVDLLLKASDSIEASQAVA 74 (133)
T ss_dssp CCCHHHHHHHHHHHGGGTCCHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhccHHHHHH
Confidence 579999999999866 8999888877777775 34455554
No 359
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=21.27 E-value=2.1e+02 Score=20.46 Aligned_cols=45 Identities=20% Similarity=0.250 Sum_probs=36.1
Q ss_pred chHHHHHHHHHHc-CCCCCCHHHHHHHHHHhhCCHHHHHHHHHc----C-CCCC
Q 015700 170 SNLEATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS----G-IPEQ 217 (402)
Q Consensus 170 ~~~e~~v~~i~~M-G~~~f~reqV~~ALrAafnNPdRAvEyL~~----G-IP~~ 217 (402)
++-+++|..+... | -..+=....|.-+-.|.+||+.-... | ||++
T Consensus 5 ~~q~~mv~~~s~~Tg---mn~~~s~~cL~~~~Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 5 PEQQEMLQAFSTQSG---MNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp HHHHHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCSCGG
T ss_pred HHHHHHHHHHHHHHC---CCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHH
Confidence 3567888888886 7 88888999999999999999965322 4 8864
No 360
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=20.65 E-value=1.5e+02 Score=24.05 Aligned_cols=41 Identities=22% Similarity=0.354 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHc----CCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015700 356 PEEREAIERLEAM----GFDRALVLEVFFACNKNEELAANYLLDH 396 (402)
Q Consensus 356 ~ee~~ai~rL~~l----Gf~~~~viqay~acdkneelAan~L~~~ 396 (402)
++=-++|++|..| .-|--.|.|||+-...+-+.|-.||+..
T Consensus 8 ~~vg~~~~~i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL~~~ 52 (111)
T 3k6g_A 8 PEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLASG 52 (111)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHS
T ss_pred CcccHHHHHHHHHHHHHhhhHHHHHHHHHHccccHHHHHHHHhCC
Confidence 3444556666654 5688889999999999999999999864
No 361
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=20.59 E-value=98 Score=20.94 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=21.2
Q ss_pred cccCCHHHHHHHHHHHHc-CCChHHHHH
Q 015700 351 AVTVTPEEREAIERLEAM-GFDRALVLE 377 (402)
Q Consensus 351 ~i~~t~ee~~ai~rL~~l-Gf~~~~viq 377 (402)
.|.||+||.+.|+..... |.+....|.
T Consensus 19 ~vRlt~eE~~~l~~~A~~~g~s~SeyiR 46 (51)
T 2ba3_A 19 TLRFSPVEDETIRKKAEDSGLTVSAYIR 46 (51)
T ss_dssp EEEECHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred EEEECHHHHHHHHHHHHHhCCCHHHHHH
Confidence 578999999999988765 877655553
No 362
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=20.43 E-value=73 Score=27.68 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=21.8
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHH
Q 015700 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKN 29 (402)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~~LK~k 29 (402)
.|+|+ ++|+.+.++++++.||.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (163)
T 1ffv_A 5 IITVN-VNGKAQEKAVEPRTLLIHFLRE 31 (163)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 46665 7899999999999999986543
No 363
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=20.35 E-value=1.7e+02 Score=26.57 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=37.9
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCC-eEEE--e-C---CeecCCCCchh
Q 015700 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLI--H-Q---GKVLKDVTTLE 60 (402)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~-QrLI--y-~---GKiL~D~~tL~ 60 (402)
|.|-..+|....|.|+++.|+.+|-+.|..+.+ +..+. ..|+ + . -+.|.|...+-
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~---~~~~~~~~l~E~~~~~~ler~l~d~E~v~ 98 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTH---CDCNVDWCLYEIYPELQIERVFEDHENVV 98 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHC---CCCCTTEEEEEEETTTTEEEECCTTSBHH
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhC---CCCCCCeEEEEeccccccceecccchhHH
Confidence 445556788889999999999999999999988 43332 3332 1 1 24677765543
Done!