BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015701
(402 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297739715|emb|CBI29897.3| unnamed protein product [Vitis vinifera]
Length = 479
Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust.
Identities = 290/392 (73%), Positives = 336/392 (85%), Gaps = 2/392 (0%)
Query: 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
L++ GL+ LLQSGKRV+SELDFAA+++PRSIKILAVTGTNGKSTV TF GQML+HLGIE
Sbjct: 87 LESHGLSFLLQSGKRVLSELDFAAEILPRSIKILAVTGTNGKSTVATFSGQMLSHLGIEV 146
Query: 73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
FVGGNLG PLSEAA C+ PS KP FQVAVVEVSSYQ+E+PNK+FCP+V+VVLNLT DH
Sbjct: 147 FVGGNLGIPLSEAAIQCLTCPSPKPVFQVAVVEVSSYQLEVPNKHFCPSVAVVLNLTSDH 206
Query: 133 LERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG--HRFNLAWIGAFPGVKI 190
LERHKTMKNYA+TKC L SHM N+KLG+LPFGN+ LNEA++ + NLAWIGAFPGVK+
Sbjct: 207 LERHKTMKNYAITKCRLLSHMTNSKLGILPFGNKLLNEAMEELVNEVNLAWIGAFPGVKV 266
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
D E K AS VPA+GVVS+L+L + VMG HNY+NAAVAALSVLGLD+G+D EA++STIE
Sbjct: 267 DKEEKVASLRVPAIGVVSELKLGALNVMGTHNYYNAAVAALSVLGLDMGIDTEAISSTIE 326
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
LR PPHRMQIVH+D GVTW+DDSKATN+EAT TGL+ LK K VILLGG AKV N QE
Sbjct: 327 KLRVPPHRMQIVHKDSYGVTWIDDSKATNVEATYTGLLGLKEQKSVILLGGLAKVSNSQE 386
Query: 311 SNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 370
SNGFE+L+EPL +HRCVITFG+SG LI KTL ++GLSIPCF AN++DAVN AR +A G
Sbjct: 387 SNGFEQLVEPLKYHRCVITFGFSGPLIQKTLSDDGLSIPCFEAANLEDAVNCARSVARYG 446
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVFQELAFSA 402
DA+VLSPGCASFDEFRNFEHRG VFQEL FS+
Sbjct: 447 DAVVLSPGCASFDEFRNFEHRGKVFQELVFSS 478
>gi|147779061|emb|CAN60311.1| hypothetical protein VITISV_002512 [Vitis vinifera]
Length = 806
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 224/343 (65%), Positives = 258/343 (75%), Gaps = 36/343 (10%)
Query: 59 TFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYF 118
T ML+HLGIE FVGGNLG PLSEAA C+ PS KP FQVAVVEVSSYQ+E+PNK+F
Sbjct: 234 TLAFPMLSHLGIEVFVGGNLGIPLSEAAIQCLTCPSPKPVFQVAVVEVSSYQLEVPNKHF 293
Query: 119 CPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG--HR 176
CP+V+VVLNLT DHLERHKTMKNYA+TKC L SHM N+KLG+LPFGN+ LNEA++ +
Sbjct: 294 CPSVAVVLNLTSDHLERHKTMKNYAITKCRLLSHMTNSKLGILPFGNKLLNEAMEELVNE 353
Query: 177 FNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL 236
NLAWIGAFPGVK+D E K AS VPA+GVVS+L+L + VMG HNY+NAAVAALSVLGL
Sbjct: 354 VNLAWIGAFPGVKVDKEEKVASLRVPAIGVVSELKLGALNVMGTHNYYNAAVAALSVLGL 413
Query: 237 DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV 296
D+G+D EA++STIE LR PPHRMQIVH+D GVTW+DDSKATN+EAT TGL+ LK K V
Sbjct: 414 DMGIDTEAISSTIEKLRVPPHRMQIVHKDSYGVTWIDDSKATNVEATYTGLLGLKEQKSV 473
Query: 297 ILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANM 356
ILLGG AK KTL +BGLSIPCF AN+
Sbjct: 474 ILLGGLAK----------------------------------KTLSDBGLSIPCFEAANL 499
Query: 357 KDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
+DAVN AR +A GDA+VLSPGCASFDEFRNFEHRG VFQEL
Sbjct: 500 EDAVNCARSVARYGDAVVLSPGCASFDEFRNFEHRGKVFQELG 542
>gi|302753318|ref|XP_002960083.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii]
gi|300171022|gb|EFJ37622.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii]
Length = 492
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 197/386 (51%), Positives = 259/386 (67%), Gaps = 7/386 (1%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
LA + SG +SEL FAA+ P+++KI AVTGTNGKSTV TF GQ+L G+ FVGGN
Sbjct: 102 LAYAMDSGIPTISELGFAAEAFPKAVKIAAVTGTNGKSTVTTFTGQILQQAGVRTFVGGN 161
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
LG P S+AA C PS P +Q AV+EVSSYQ+E+P F P+V V+LNL+PDHLERHK
Sbjct: 162 LGTPFSDAACECFKFPSDDPPYQAAVLEVSSYQLELPGS-FSPSVGVILNLSPDHLERHK 220
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFN----LAWIGAFPGVKIDTE 193
+M+NY TKC LF M ++KL ++P ++ L + +++N AW+GA PGV++D++
Sbjct: 221 SMENYGETKCRLFERMDSSKLSIIPHADEFLRKV--AYKYNSGSTKAWLGALPGVQLDSQ 278
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
A+ A VP ++L L +K +G HN NAA A+L L LD+GVD L + I L
Sbjct: 279 ARRAVVVVPTTKAEARLYLSGLKAVGSHNAQNAATASLLSLALDVGVDEHKLQAAIGQLT 338
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
PHRMQIV +D +GV W++DSKATN++A TG+ L K VILLGG AKVL+ S G
Sbjct: 339 PLPHRMQIVGQDKKGVLWINDSKATNVDAAYTGIKGLADRKAVILLGGLAKVLDEDGSLG 398
Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
F+KL + L +HR ++TFG G I K L +SIPCF M+DAV A +++ GD I
Sbjct: 399 FKKLSDLLQNHRAIVTFGAFGEQIEKELKEANVSIPCFRSLTMEDAVARAEKLSKQGDII 458
Query: 374 VLSPGCASFDEFRNFEHRGMVFQELA 399
+LSP CASFDEFRNF+HRG VF +LA
Sbjct: 459 LLSPACASFDEFRNFQHRGEVFGQLA 484
>gi|302804608|ref|XP_002984056.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii]
gi|300148408|gb|EFJ15068.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii]
Length = 492
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/386 (50%), Positives = 258/386 (66%), Gaps = 7/386 (1%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
LA + SG +SEL AA+ P+++KI AVTGTNGKSTV TF GQ+L G+ F+GGN
Sbjct: 102 LAYAMDSGIPTISELGLAAEAFPKAVKIAAVTGTNGKSTVTTFTGQILQQAGVRTFIGGN 161
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
LG P S+AA C PS P +QV V+EVSSYQ+E+P F P+V V+LNL+PDHLERHK
Sbjct: 162 LGTPFSDAACECFKFPSDDPPYQVTVLEVSSYQLELPGS-FSPSVGVILNLSPDHLERHK 220
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFN----LAWIGAFPGVKIDTE 193
+M+NY TKC LF M ++KL ++P ++ L + +++N AW+GA PG+++D++
Sbjct: 221 SMENYGETKCRLFERMDSSKLSIIPHADEFLRKV--AYKYNSGSTKAWLGALPGIQLDSQ 278
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
A+ A VP ++L L +K +G HN NAA A+L L LD+GVD L + I L
Sbjct: 279 ARRAVVVVPTTKAEARLYLSGLKAVGSHNAQNAATASLLSLALDVGVDEHKLQAAIGQLT 338
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
PHRMQIV +D +GV W++DSKATN++A TG+ L K VILLGG AKVL+ S G
Sbjct: 339 PLPHRMQIVGQDKKGVLWINDSKATNVDAAYTGIKGLADRKAVILLGGLAKVLDQDGSLG 398
Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
F+KL + L +HR ++TFG G I K L +SIPCF M+DAV A +++ GD I
Sbjct: 399 FKKLSDLLQNHRAIVTFGAFGEQIEKELKEANVSIPCFRSLTMEDAVARAEKLSKQGDII 458
Query: 374 VLSPGCASFDEFRNFEHRGMVFQELA 399
+LSP CASFDEFRNFEHRG VF +LA
Sbjct: 459 LLSPACASFDEFRNFEHRGEVFGQLA 484
>gi|302804600|ref|XP_002984052.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii]
gi|300148404|gb|EFJ15064.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii]
Length = 492
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 199/386 (51%), Positives = 259/386 (67%), Gaps = 7/386 (1%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
LA + SG +SEL FAA+ P+++KI AVTGTNGKSTV TF GQ+L G+ FVGGN
Sbjct: 102 LAYAMDSGIPTISELGFAAEAFPKAVKIAAVTGTNGKSTVTTFTGQILQQAGVRTFVGGN 161
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
LG P S+AA C PS P +QV V+EVSSYQ+E+P F P+V V+LNL+PDHLERHK
Sbjct: 162 LGTPFSDAACECFMFPSDDPPYQVTVLEVSSYQLELPGS-FSPSVGVILNLSPDHLERHK 220
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFN----LAWIGAFPGVKIDTE 193
+M+NY TKC LF M ++KL ++P G++ L + +++N AW+GA PGV++D +
Sbjct: 221 SMENYGETKCRLFERMDSSKLSIIPHGDEFLRKV--AYKYNSGSTKAWLGALPGVQLDNQ 278
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
A+ A VP ++L L +K +G HN NAA A+L L LD+GVD L + I L
Sbjct: 279 ARRAVVVVPTTKAEARLYLSGLKAVGSHNAQNAATASLLSLALDLGVDEHKLQAAIGQLT 338
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
PHRMQIV +D +GV W++DSKATN++A TG+ L K VILLGG AKVL+ S G
Sbjct: 339 PLPHRMQIVGQDKKGVLWINDSKATNVDAAYTGIKGLADRKAVILLGGLAKVLDQDGSLG 398
Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
F+KL + L +HR ++TFG G I K L +SIPCF M+DAV A +++ GD I
Sbjct: 399 FKKLSDLLQNHRAIVTFGAFGKQIEKELKEANVSIPCFRSLTMEDAVAIAEKLSKQGDII 458
Query: 374 VLSPGCASFDEFRNFEHRGMVFQELA 399
+LSP CASFDEFRNFEHRG VF +LA
Sbjct: 459 LLSPACASFDEFRNFEHRGEVFGQLA 484
>gi|168039117|ref|XP_001772045.1| predicted protein [Physcomitrella patens subsp. patens]
gi|76880192|dbj|BAE45867.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Physcomitrella
patens]
gi|162676646|gb|EDQ63126.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 521
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/384 (50%), Positives = 255/384 (66%), Gaps = 3/384 (0%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+A +Q+G SEL FAA +P +IK+ AVTGTNGKSTV TF Q+L + G+ FVGGN
Sbjct: 134 IAAAIQAGVPAFSELGFAAAALPGNIKVAAVTGTNGKSTVTTFTSQILRNAGVRTFVGGN 193
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
LG PLS+ C+A P+ P F VAVVEVSSYQ+E+P F P +V+LNLTPDHLERHK
Sbjct: 194 LGTPLSDGVLQCLAFPAEDPPFSVAVVEVSSYQLELPGS-FHPKAAVILNLTPDHLERHK 252
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNE--AIKGHRFNLAWIGAFPGVKIDTEAK 195
+M+ Y KC +FS M + + ++P + L A+ G + AW+G PGV++D +A+
Sbjct: 253 SMEAYGSIKCRVFSRMEASDVAIIPQSDVLLRRLAAMSGSQATRAWMGGLPGVQLDKDAR 312
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
A VP GV ++L L +++ +G HN HNA AAL L LD+G+ E + + I L+ P
Sbjct: 313 RAIVVVPTTGVEARLYLSSLQAVGTHNAHNAGTAALLALSLDVGLQSEDIQAAIPHLKAP 372
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
PHRM+IVH+D QGV WV+DSKATN+++T G+ + G K V+LLGGQAKV G GF
Sbjct: 373 PHRMEIVHQDDQGVVWVNDSKATNVDSTSVGIRSIVGKKAVVLLGGQAKVGVGSGGLGFG 432
Query: 316 KLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
L+E L HR V+ FG SG+ I + L + GLSI C DAV A +A GDA++L
Sbjct: 433 VLVESLQSHRAVVLFGASGLAIEQELRHAGLSITCTYTELFADAVQLAGSLAQPGDAVLL 492
Query: 376 SPGCASFDEFRNFEHRGMVFQELA 399
SPGCASFD+F+NFEHRG VF +LA
Sbjct: 493 SPGCASFDQFKNFEHRGQVFADLA 516
>gi|225454866|ref|XP_002275450.1| PREDICTED: UDP-N-acetylmuramoylalanine--D-glutamate ligase-like
[Vitis vinifera]
Length = 307
Score = 360 bits (925), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 201/386 (52%), Positives = 239/386 (61%), Gaps = 91/386 (23%)
Query: 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
L++ GL+ LLQSGKR++S+LDFAA+++PRSIKILA TGTNGKST+ TF GQML+HLGIE
Sbjct: 10 LESHGLSFLLQSGKRILSKLDFAAEILPRSIKILAATGTNGKSTIATFSGQMLSHLGIEV 69
Query: 73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
V GNLG PLSEAA C+ PS KP FQVAVVEVSSYQ+E+PNK+FCP+V V L+LT DH
Sbjct: 70 IVEGNLGIPLSEAAIQCLTCPSPKPVFQVAVVEVSSYQLEVPNKHFCPSVVVGLDLTSDH 129
Query: 133 LERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT 192
LERHKTMKNYA+TKC L SHM N+KLG+LPF L+ +G G IDT
Sbjct: 130 LERHKTMKNYAITKCRLLSHMSNSKLGILPFVAA------------LSVLGLDMG--IDT 175
Query: 193 EAKTASFE---VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
EA +++ E VP H M++
Sbjct: 176 EAISSTIEKLRVPP---------HRMQI-------------------------------- 194
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
VH+D VTW+DDSKATN+EAT GL+ L K VI LGG AKV N Q
Sbjct: 195 ------------VHKDSYEVTWIDDSKATNVEATYIGLLGLNEQKSVIPLGGLAKVSNSQ 242
Query: 310 ESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN 369
ES+GFE L KTL +NG SIPCF AN++DAVN AR +A
Sbjct: 243 ESDGFEPL---------------------KTLSDNGFSIPCFEAANLEDAVNCARSVARY 281
Query: 370 GDAIVLSPGCASFDEFRNFEHRGMVF 395
GDA++LSPGCASFDEFRNFEHRG VF
Sbjct: 282 GDAVILSPGCASFDEFRNFEHRGKVF 307
>gi|147774763|emb|CAN60280.1| hypothetical protein VITISV_028258 [Vitis vinifera]
Length = 926
Score = 360 bits (923), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 194/371 (52%), Positives = 230/371 (61%), Gaps = 98/371 (26%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+ SGKR++S+LDFAA+++PRSIKILA TGTNGKST+ TF GQML+HLGIE
Sbjct: 432 MHSGKRILSKLDFAAEILPRSIKILAATGTNGKSTIATFSGQMLSHLGIE---------- 481
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
VAVVEVSSYQ+E+PNK+FCP++ V LNLT DHLERHKTMKN
Sbjct: 482 -------------------VAVVEVSSYQLEVPNKHFCPSIVVGLNLTSDHLERHKTMKN 522
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
YA+TK L + V
Sbjct: 523 YAITKKRLPVY------------------------------------------------V 534
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
PA+GVVS+L+L + VMGRHNY+N AVAALS LGLD+ +D EA++STIE LR PPHRMQI
Sbjct: 535 PAIGVVSKLKLGALNVMGRHNYYNVAVAALSDLGLDMXIDTEAISSTIEKLRVPPHRMQI 594
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
VH+D VTW+DDSKATN+EAT GL+ L K VI LGG AKV N QES+GFE L
Sbjct: 595 VHKDSYEVTWIDDSKATNVEATYIGLLGLNEQKSVIPLGGLAKVSNSQESDGFEPL---- 650
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
KTL +NG SIPCF AN++DAVN AR +A GDA++LSPGCAS
Sbjct: 651 -----------------KTLSDNGFSIPCFEAANLEDAVNCARSVARYGDAVILSPGCAS 693
Query: 382 FDEFRNFEHRG 392
FDEFRNFEHRG
Sbjct: 694 FDEFRNFEHRG 704
>gi|303273586|ref|XP_003056153.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462237|gb|EEH59529.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 647
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 159/452 (35%), Positives = 215/452 (47%), Gaps = 85/452 (18%)
Query: 20 CLLQSGKR--VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
C + G + V+SEL FA+Q +P+ + I+A++GTNGKSTV +F Q+L F+GGN
Sbjct: 199 CQTKQGSKCTVISELAFASQCLPKMLPIVAISGTNGKSTVCSFTAQLLASCDCRTFMGGN 258
Query: 78 LGNPLSEAAF----------HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLN 127
+G PLS+ A H L P + AVVE SSYQ++ P + +LN
Sbjct: 259 IGKPLSDCALEFILAEHICGHLADLGHHWP-YDAAVVECSSYQLDHPGTLRF-DAACILN 316
Query: 128 LTPDHLERHKTMKNYALTKCHLFSHMVNT-KLGLLP-----------------FGNQHL- 168
LTPDHLERHK+M NYA K +F+ + T L +LP H+
Sbjct: 317 LTPDHLERHKSMANYATAKTQIFAGLRGTHTLAVLPKRESARGRHQSYQVESDSTTDHIV 376
Query: 169 -----------------------------NEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
NE + LA IG+ PGVK+D K A
Sbjct: 377 DLDYDGATLLEKCREAVIKTLMRRVSETPNERVACIGGRLAHIGSLPGVKVDLNTKIAIV 436
Query: 200 EVPAVGVV------SQLQLHNMKVMGRHNYHNAAVAALSVLGLD-IGVDVEALNSTIEIL 252
+P+ S + L + +G HN NA++A L L V L ++ L
Sbjct: 437 HLPSNRSSSRQNSPSYVDLSAVSSLGTHNILNASIALLMAHSLSPKDFTVARLKVGLDRL 496
Query: 253 RTPPHRMQIVHR----DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG 308
+ PHRMQ+V + +G+ WV+DSKATN+EA GL G +A G
Sbjct: 497 KLLPHRMQLVAQTGNPSFRGIHWVNDSKATNIEAAIVGLQSY---------GRRALAKTG 547
Query: 309 QESN--GFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRM 366
SN GF L+ L H+ VITFG SG LI L G++ P V+ + DAV AR +
Sbjct: 548 TASNELGFAALVPALLKHQGVITFGESGSLIANELREAGIN-PKAEVSQLSDAVTLARAV 606
Query: 367 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
G A++LSP CASFDEF +F RG VF L
Sbjct: 607 VRRGGAVILSPACASFDEFDSFAQRGEVFTHL 638
>gi|253997371|ref|YP_003049435.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylotenera
mobilis JLW8]
gi|253984050|gb|ACT48908.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera
mobilis JLW8]
Length = 452
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 124/390 (31%), Positives = 200/390 (51%), Gaps = 54/390 (13%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+Q G V+ +++ AQ P S K++A+TG NGK+TV T VG+M G++ V GN+G P
Sbjct: 90 IQRGIPVVGDVELFAQYRPTSAKLIAITGANGKTTVTTLVGEMCKSAGLKTIVAGNIGLP 149
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ + L P V V+E+SS+Q+E N + +LNL+ DH++R+ +M++
Sbjct: 150 VLD------TLSMETP--DVYVLELSSFQLETTNSLLA-DAATMLNLSEDHMDRYDSMQS 200
Query: 142 YALTKCHLFSH---------------MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP 186
YA+ K H+F H M KL + FG L++ + + + +
Sbjct: 201 YAVAKAHIFYHAKLQVLNRDDAWSLMMARAKLAQVTFG---LDDVVAEQDYGIKQVNGET 257
Query: 187 GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
+ + G + + ++K+ G HN NA A G IG+D +
Sbjct: 258 WL--------------SCGTHDLMNIRDLKIAGLHNASNALAAMALCRG--IGLDFAPII 301
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVL 306
T+ + PHR++ V +I V + DDSK TN+ ATC L L K V++ GG+ K
Sbjct: 302 QTLYNFKGLPHRVEWV-ANIDDVDYYDDSKGTNVGATCAALSGLS-QKVVLIAGGEGK-- 357
Query: 307 NGQESNGFEKLIEPLN-HHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR 365
GQ+ F L E ++ + R V+ G LI L++ ++P + A++ +AV A++
Sbjct: 358 -GQD---FSPLKEAVSTNARAVVLIGRDAPLIEAELLST--NVPMYHAADLPEAVTIAQK 411
Query: 366 MATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
+A GDA++LSP CASFD F+N+ HR VF
Sbjct: 412 LAQTGDAVLLSPACASFDMFKNYVHRAEVF 441
>gi|149922481|ref|ZP_01910913.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Plesiocystis
pacifica SIR-1]
gi|149816676|gb|EDM76168.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Plesiocystis
pacifica SIR-1]
Length = 468
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 124/361 (34%), Positives = 179/361 (49%), Gaps = 21/361 (5%)
Query: 40 PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKF 99
PRS++ +TGTNGKSTV G +L G F GGNLG PLSE P
Sbjct: 121 PRSLETALITGTNGKSTVTALTGALLEAGGRSTFTGGNLGVPLSELVLAVARGEREAP-- 178
Query: 100 QVAVVEVSSYQMEIPNKYFCPTVSV--VLNLTPDHLERHKTMKNYALTKCHLFSHMVNTK 157
+ V+E SSYQ+E + P VSV +LN++PDHL+R+ ++++YA TK +F +
Sbjct: 179 EALVLECSSYQLETLRVHGSPAVSVAMLLNVSPDHLDRYDSLEHYAETKGRVFGGLEPGG 238
Query: 158 LGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKV 217
L LL ++ A G AS E+ G + + +
Sbjct: 239 LALLS-ARDAFTPRLRRFVPEAARCVLVDGEDDRPRLSDASLEL---GAGESIDRRALAL 294
Query: 218 MGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ-IVHRDIQGVTWVDDSK 276
GRHN NA A L+ L GV ++ +T+ + PHRM I RD GV + DDSK
Sbjct: 295 AGRHNALNALFAVLAARHL--GVSLDTCEATLRRFQALPHRMNPIAERD--GVRYFDDSK 350
Query: 277 ATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVL 336
ATN+ + GL + V++ GG+AK +G + ++ R ++ G S
Sbjct: 351 ATNVASVLAGLDGFE-QTFVLICGGRAK--DGDDLGALRPVLA--RQGRALVALGESA-- 403
Query: 337 IWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
+ + ++PC VA+M +AV A A GDA++LSP CAS+D +R+F HRG VF
Sbjct: 404 -EQFMAMAKGALPCVRVADMDEAVRVAASCAQPGDAVLLSPACASWDMYRSFVHRGEVFA 462
Query: 397 E 397
E
Sbjct: 463 E 463
>gi|313200239|ref|YP_004038897.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase [Methylovorus sp.
MP688]
gi|312439555|gb|ADQ83661.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylovorus sp.
MP688]
Length = 460
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 130/391 (33%), Positives = 187/391 (47%), Gaps = 52/391 (13%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L +G +V+ +++ AQ PRS K++A+TG NGK+TV T VG+M G++ V GN+G P
Sbjct: 89 LANGIQVVGDVELFAQFRPRSSKVIAITGANGKTTVTTLVGEMCKAAGLKTVVAGNIGLP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ +A + V V+E+SS+Q+E P + VLN+T DH++R+ M
Sbjct: 149 VLDALRQV----ETDGAPDVYVLELSSFQLET-TSSLAPDAAAVLNVTEDHMDRYPGMPE 203
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG--AFPGVKIDTEAKTASF 199
YA K + G Q LN AW A P + T
Sbjct: 204 YAAAKARILKGA----------GVQVLNR-------EDAWCRNMALPDQPVVTFGLDLPV 246
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL--------------DIGVDVEAL 245
E A G+ L LH+ + + + V L + GL IGVD L
Sbjct: 247 ESHAYGL---LALHDQLWLAQGAHPILHVEELRIPGLHNAANALAALALCRAIGVDWAPL 303
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKV 305
+ + PHR++ V D+ + + DDSK TN+ ATC L L K V++ GG K
Sbjct: 304 QHVLREFKGLPHRVEWVA-DLHDIAFYDDSKGTNVGATCAALAGLP-RKVVLIAGGDGK- 360
Query: 306 LNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR 364
GQ+ F L EP++ + R V+ G LI L G +P A++++AV A
Sbjct: 361 --GQD---FSPLREPVDQNARAVVLIGRDAALIEAAL--QGSPVPRLHAASLEEAVQQAY 413
Query: 365 RMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
AT GDA++LSP CASFD FRN+ HR VF
Sbjct: 414 AAATPGDAVLLSPACASFDMFRNYAHRAEVF 444
>gi|304317204|ref|YP_003852349.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
gi|302778706|gb|ADL69265.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 454
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 123/381 (32%), Positives = 202/381 (53%), Gaps = 33/381 (8%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+ E++FA ++ I A+TGTNGK+T + +G++ + G+ +V GN+G PL E
Sbjct: 92 GIEVIGEVEFAYRL--SKAPIYAITGTNGKTTTTSLLGEIFKNSGVRTYVAGNIGYPLVE 149
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
AA V V E+SS+Q+E K F P +S ++N+TPDHL RHKT++NY
Sbjct: 150 AAVKA-------GNDDVIVAEISSFQLETI-KEFRPVISAIINITPDHLNRHKTLENYIN 201
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K +F + + +L + +++++ F+ A FP + E +
Sbjct: 202 IKGRIFENQSFNEYTVLNYDDKNISSL-----FDRAKCKVFPFSMEKILYRGTYVENGKI 256
Query: 205 GVVSQ------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
+ S + ++++ + G HN NA VA S + G+DV +N+T++ + HR
Sbjct: 257 VISSNGEKNTIIDINDIYIPGNHNVENAMVA--STMAFLAGIDVNIINTTLKTFKGVEHR 314
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
++ V R I GV + +DSK TN +A + +KG +++ GG K ++ F++
Sbjct: 315 IEFV-RSINGVKYYNDSKGTNPDAAIKAIEAMKG-PIILIAGGYDKGVS------FDEFT 366
Query: 319 EPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVAN-MKDAVNHARRMATNGDAIVLS 376
N R +I G + LI+K+ V NG S V N + DAV A +M+ GD ++LS
Sbjct: 367 SSFNGRVRKLILLGETRDLIYKSAVKNGFSREDITVVNSLDDAVYAAYKMSMPGDNVLLS 426
Query: 377 PGCASFDEFRNFEHRGMVFQE 397
P CAS+D F+NFE RG +F++
Sbjct: 427 PACASWDMFKNFEERGKLFKD 447
>gi|33598264|ref|NP_885907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
parapertussis 12822]
gi|62900578|sp|Q7W4B2.1|MURD_BORPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|33566822|emb|CAE39037.1| putative peptidoglycan synthesis protein [Bordetella parapertussis]
Length = 508
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 135/390 (34%), Positives = 191/390 (48%), Gaps = 50/390 (12%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
++LA+TGTNGK+TV Q++ G+ A GN+ +P + AA P QV V
Sbjct: 132 RVLAITGTNGKTTVTALTRQLIEAGGMSARAAGNI-SPAALAALIDALDQDDLP--QVWV 188
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS------------ 151
+E+SS+Q+E + P +VVLN+T DHL+ H M+ YA K +
Sbjct: 189 LELSSFQLET-TRTLAPDAAVVLNVTQDHLDWHGDMQAYAQAKARILKPARLAIVNRDDP 247
Query: 152 ---HMVNT--KLGLLPFGNQHLNEAIKGHRF-----NLAWIGAFPGVKIDTEAKTASFEV 201
MV + L + FG A+ G +AW+ A D A +
Sbjct: 248 LTVAMVESLQALNVRSFGRDV--PALVGDMGLELGQGVAWLTACESNDFDEPAPRRKKDA 305
Query: 202 P----AVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
P A G +S+L + +++ G HN NA A LD+G + T+ P
Sbjct: 306 PPPTRAGGRMSRLMPVDALRIRGVHNALNALAAMQLARSLDLGWG--PMLRTLRDYAGEP 363
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK 316
HR ++V R I V +++DSK TN+ AT L L G + V++ GGQ K GQ+ F
Sbjct: 364 HRAELV-RSIGDVDYINDSKGTNVGATVAALEGL-GQQVVLIAGGQGK---GQD---FSP 415
Query: 317 LIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
L+ + H R V+ G G I K L G +PC A A+M++AV A +A GDA++L
Sbjct: 416 LVPVVRRHARAVVLIGVDGAAIGKVLEPTG--VPCVAAADMREAVRRAAELAQPGDAVLL 473
Query: 376 SPGCASFDEFRNFEHRGMVF----QELAFS 401
SP CASFD FRN+ HRG VF QELA
Sbjct: 474 SPACASFDMFRNYPHRGEVFAAEVQELALD 503
>gi|206889487|ref|YP_002249134.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Thermodesulfovibrio yellowstonii DSM 11347]
gi|206741425|gb|ACI20482.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Thermodesulfovibrio yellowstonii DSM 11347]
Length = 482
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 123/412 (29%), Positives = 207/412 (50%), Gaps = 41/412 (9%)
Query: 13 LKATGLACLLQSGKRVMSELDFAAQV---IPRSIKILAVTGTNGKSTVVTFVGQMLNHLG 69
L + + G V+ E++ + Q+ I ++KI+ +TG NGKST T + L G
Sbjct: 88 LSTPSIVSAVYKGIPVIGEIELSWQILSLIKENVKIIGITGANGKSTTSTLTYEFLKRDG 147
Query: 70 IEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLT 129
+ + GN+G P++E + L + + + V+E+SS+Q+E K F P + +LN+T
Sbjct: 148 KKVQLAGNIGYPMAEV---VLKLLNKEIDMEYLVLELSSFQLE-GIKTFKPDFAAILNIT 203
Query: 130 PDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAI---------KG---HRF 177
PDH++R+ MK Y K +F + +L +++ AI KG H F
Sbjct: 204 PDHMDRYSDMKEYIEAKAKIFQNQNGDDYLILNMDDENTISAIEYLRNVYLKKGKLPHVF 263
Query: 178 NLAWIGAFPGVKIDTEA------KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
+ + G + ++ + S ++ + L + K+ G HN N + A
Sbjct: 264 YFSRVQNVYGAYLKNDSIYFNAREEVSDDIKKEMENTVLSVSTFKIKGIHNVEN--IMAA 321
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
S+L L G +++ ++ PHRM+ V R+I GV +++DSK TN++A L
Sbjct: 322 SLLALCSGCKGQSIKDVVQQFPGLPHRMEPV-REIDGVIYINDSKGTNVDAVKKSLESFP 380
Query: 292 GHKCVILLGGQAKVLNGQESNG-FEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIP 349
G+ VIL+ G G++ +G F L + + ++ G + I L G +P
Sbjct: 381 GN--VILIAG------GRDKDGDFSALKSIVKEKVKALLLIGEAKHKIADAL---GDLVP 429
Query: 350 CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 401
C+ ++MK AV A+ +A GD ++LSPGCASFD F+NFEHRG VF+++ S
Sbjct: 430 CYLESDMKSAVIKAKEIARAGDVVLLSPGCASFDMFKNFEHRGEVFKDIVNS 481
>gi|33603175|ref|NP_890735.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
bronchiseptica RB50]
gi|412341495|ref|YP_006970250.1| peptidoglycan synthesis protein [Bordetella bronchiseptica 253]
gi|427816185|ref|ZP_18983249.1| putative peptidoglycan synthesis protein [Bordetella bronchiseptica
1289]
gi|62900580|sp|Q7WFS0.1|MURD_BORBR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|33568806|emb|CAE34564.1| putative peptidoglycan synthesis protein [Bordetella bronchiseptica
RB50]
gi|408771329|emb|CCJ56129.1| putative peptidoglycan synthesis protein [Bordetella bronchiseptica
253]
gi|410567185|emb|CCN24756.1| putative peptidoglycan synthesis protein [Bordetella bronchiseptica
1289]
Length = 510
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 136/392 (34%), Positives = 191/392 (48%), Gaps = 52/392 (13%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
++LA+TGTNGK+TV Q++ G+ A GN+ +P + AA P QV V
Sbjct: 132 RVLAITGTNGKTTVTALTRQLIEAGGMSARAAGNI-SPAALAALIDALDQDDLP--QVWV 188
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS------------ 151
+E+SS+Q+E + P +VVLN+T DHL+ H M+ YA K +
Sbjct: 189 LELSSFQLET-TRTLAPDAAVVLNVTQDHLDWHGDMQAYAQAKARILKPARLAIVNRDDP 247
Query: 152 ---HMVNT--KLGLLPFGNQHLNEAIKGHRF-----NLAWIGAFPGVKIDTEA------K 195
MV + L + FG A+ G +AW+ A D A K
Sbjct: 248 LTVAMVESLQALNVRSFGRDV--PALVGDMGLELGQGVAWLTACESNDFDEPAPAPRRKK 305
Query: 196 TASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
A A G +S+L + +++ G HN NA A LD+G + T+
Sbjct: 306 DAPPPTRAGGRMSRLMPVDALRIRGVHNALNALAAMQLARSLDLGWG--PMLRTLRDYAG 363
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGF 314
PHR ++V R I V +++DSK TN+ AT L L G + V++ GGQ K GQ+ F
Sbjct: 364 EPHRAELV-RSIGDVDYINDSKGTNVGATVAALEGL-GQQVVLIAGGQGK---GQD---F 415
Query: 315 EKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
L+ + H R V+ G G I K L G +PC A A+M++AV A +A GDA+
Sbjct: 416 SPLVPVVRRHARAVVLIGVDGAAIGKVLEPTG--VPCVAAADMREAVRRAAELAQPGDAV 473
Query: 374 VLSPGCASFDEFRNFEHRGMVF----QELAFS 401
+LSP CASFD FRN+ HRG VF QELA
Sbjct: 474 LLSPACASFDMFRNYPHRGEVFAAEVQELALD 505
>gi|410471658|ref|YP_006894939.1| peptidoglycan synthesis protein [Bordetella parapertussis Bpp5]
gi|408441768|emb|CCJ48263.1| putative peptidoglycan synthesis protein [Bordetella parapertussis
Bpp5]
Length = 510
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 136/392 (34%), Positives = 191/392 (48%), Gaps = 52/392 (13%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
++LA+TGTNGK+TV Q++ G+ A GN+ +P + AA P QV V
Sbjct: 132 RVLAITGTNGKTTVTALTRQLIEAGGMSARAAGNI-SPAALAALMDALDQDDLP--QVWV 188
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS------------ 151
+E+SS+Q+E + P +VVLN+T DHL+ H M+ YA K +
Sbjct: 189 LELSSFQLET-TRTLAPDAAVVLNVTQDHLDWHGDMQAYAQAKARILKPARLAIVNRDDP 247
Query: 152 ---HMVNT--KLGLLPFGNQHLNEAIKGHRF-----NLAWIGAFPGVKIDTEA------K 195
MV + L + FG A+ G +AW+ A D A K
Sbjct: 248 LTVAMVESLQALNVRSFGRDV--PALVGDMGLELGQGVAWLTACESNDFDEPAPAPRRKK 305
Query: 196 TASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
A A G +S+L + +++ G HN NA A LD+G + T+
Sbjct: 306 DAPPPTRAGGRMSRLMPVDALRIRGVHNALNALAAMQLARSLDLGWG--PMLRTLRDYAG 363
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGF 314
PHR ++V R I V +++DSK TN+ AT L L G + V++ GGQ K GQ+ F
Sbjct: 364 EPHRAELV-RSIGDVDYINDSKGTNVGATVAALEGL-GQQVVLIAGGQGK---GQD---F 415
Query: 315 EKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
L+ + H R V+ G G I K L G +PC A A+M++AV A +A GDA+
Sbjct: 416 SPLVPVVRRHARAVVLIGVDGAAIGKVLEPTG--VPCVAAADMREAVRRAAELAQPGDAV 473
Query: 374 VLSPGCASFDEFRNFEHRGMVF----QELAFS 401
+LSP CASFD FRN+ HRG VF QELA
Sbjct: 474 LLSPACASFDMFRNYPHRGEVFAAEVQELALD 505
>gi|383788843|ref|YP_005473412.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caldisericum exile
AZM16c01]
gi|381364480|dbj|BAL81309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caldisericum exile
AZM16c01]
Length = 448
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 194/383 (50%), Gaps = 26/383 (6%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G +++ EL+FA P + KI+A+TGTNGKST G + VGGNLG
Sbjct: 83 LESKGIKIIGELEFANMFSPNT-KIIAITGTNGKSTTTALTGHIFKLFNQNTVVGGNLGT 141
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P SE + L + P++ AV+E S +Q+E +Y P VSV LN T DHL+R+ +M+
Sbjct: 142 PYSE-----LLLENPNPEY--AVLETSCFQLETIEQY-HPEVSVFLNFTEDHLDRYTSME 193
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQ---HLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
+Y K +F + + +L + ++ +L++ IK + + + + K
Sbjct: 194 DYLKAKKRIFINQTESDFAILNYDDEVVKNLSKEIKPQVYYFSLKESIESGAFLKDNKIY 253
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
E ++ + ++G HN N + L + + GV VE + I + PH
Sbjct: 254 FREDKFSKPKEIIEKEEIPLLGLHNVQNTLASILCSIVM--GVPVEVIRDGIRTFKGLPH 311
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R++ V R++ GV +++DSK+T ++T L K +++ GG +K +N F +L
Sbjct: 312 RLEFV-REVNGVIFINDSKSTTPDSTIKALESF-NQKVILIAGGSSK------NNDFTQL 363
Query: 318 IEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFA-VANMKDAVNHARRMATNGDAIVL 375
+ + +I G + + + + FA V ++K+A+ AR +A GD ++L
Sbjct: 364 AKMFRDKVKFLILLGQTAHQLKE--ASTKADFHDFAIVGSLKEAITFARNIAKAGDIVLL 421
Query: 376 SPGCASFDEFRNFEHRGMVFQEL 398
SP CASFD FR+FE RG F+E+
Sbjct: 422 SPACASFDMFRDFEDRGEQFKEI 444
>gi|410421657|ref|YP_006902106.1| peptidoglycan synthesis protein [Bordetella bronchiseptica MO149]
gi|427818854|ref|ZP_18985917.1| putative peptidoglycan synthesis protein [Bordetella bronchiseptica
D445]
gi|427825302|ref|ZP_18992364.1| putative peptidoglycan synthesis protein [Bordetella bronchiseptica
Bbr77]
gi|408448952|emb|CCJ60638.1| putative peptidoglycan synthesis protein [Bordetella bronchiseptica
MO149]
gi|410569854|emb|CCN17975.1| putative peptidoglycan synthesis protein [Bordetella bronchiseptica
D445]
gi|410590567|emb|CCN05658.1| putative peptidoglycan synthesis protein [Bordetella bronchiseptica
Bbr77]
Length = 510
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 136/390 (34%), Positives = 190/390 (48%), Gaps = 48/390 (12%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
++LA+TGTNGK+TV Q++ G+ A GN+ +P + AA P QV V
Sbjct: 132 RVLAITGTNGKTTVTALTRQLIEAGGMSARAAGNI-SPAALAALMDALDQDDLP--QVWV 188
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS----HMVNTKLG 159
+E+SS+Q+E + P +VVLN+T DHL+ H M+ YA K + +VN
Sbjct: 189 LELSSFQLET-TRTLAPDAAVVLNVTQDHLDWHGDMQAYAQAKARILKPARLAIVNRDDP 247
Query: 160 L---LPFGNQHLNEAIKGHRF-------------NLAWIGAFPGVKIDTEA------KTA 197
L + Q LN G +AW+ A D A K A
Sbjct: 248 LTLAMVESLQALNVRSFGRDVPALVGDMGLELGQGVAWLTACESNDFDEPAPAPRRKKDA 307
Query: 198 SFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
A G +S+L + +++ G HN NA A LD+G + T+ P
Sbjct: 308 PPPTRAGGRMSRLMPVDALRIRGVHNALNALAAMQLARSLDLGWG--PMLRTLRDYAGEP 365
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK 316
HR ++V R I V +++DSK TN+ AT L L G + V++ GGQ K GQ+ F
Sbjct: 366 HRAELV-RSIGDVDYINDSKGTNVGATVAALEGL-GQQVVLIAGGQGK---GQD---FSP 417
Query: 317 LIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
L+ + H R V+ G G I K L G +PC A A+M++AV A +A GDA++L
Sbjct: 418 LVPVVRRHARAVVLIGVDGAAIGKVLEPTG--VPCVAAADMREAVRRAAELAQPGDAVLL 475
Query: 376 SPGCASFDEFRNFEHRGMVF----QELAFS 401
SP CASFD FRN+ HRG VF QELA
Sbjct: 476 SPACASFDMFRNYPHRGEVFAAEVQELALD 505
>gi|333896893|ref|YP_004470767.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Thermoanaerobacterium xylanolyticum LX-11]
gi|333112158|gb|AEF17095.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Thermoanaerobacterium xylanolyticum LX-11]
Length = 454
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 203/378 (53%), Gaps = 23/378 (6%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
G V+ E++FA ++ I A+TGTNGK+T + +G++ G++ +V GN+G PL
Sbjct: 90 SKGIDVIGEVEFAYRL--SKAPIYAITGTNGKTTTTSLLGEIFKASGVKTYVAGNIGYPL 147
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
EAA + A V V E+SS+Q+E K F P +S ++N+TPDHL RHKT++NY
Sbjct: 148 VEAAINANAE-------DVIVAEISSFQLETI-KEFKPVISAIINITPDHLNRHKTLENY 199
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K +F + + +L + +++++ K + N+ ++ T + +
Sbjct: 200 IEIKGRIFENQTADQFTVLNYDDKNISSLFKKAKCNVFPFSRNRALEYGTYLENGKIIIS 259
Query: 203 AVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
A G S + + ++ + G HN NA VA S + G+D++ ++ T+ + HR++
Sbjct: 260 ANGEKSTIIDIEDIYIPGNHNVENAMVA--STMAYLAGIDIKVISETLRTFKGVEHRIEF 317
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE-SNGFEKLIEP 320
V R++ GV + +DSK TN +A + +KG +++ GG K ++ E + F+ ++
Sbjct: 318 V-RNVNGVKYYNDSKGTNPDAAIKAIEAMKG-PIILIAGGYDKGVSFDEFTASFKGRVKK 375
Query: 321 LNHHRCVITFGYSGVLIWKTLVNNGLS-IPCFAVANMKDAVNHARRMATNGDAIVLSPGC 379
L I G + LI+K+ + G S V ++ DAV A A GD ++LSP C
Sbjct: 376 L------ILLGETKDLIYKSAIKEGYSEDDVIFVESIDDAVYAAYNAAKPGDNVLLSPAC 429
Query: 380 ASFDEFRNFEHRGMVFQE 397
AS+D FRN+E RG +F++
Sbjct: 430 ASWDMFRNYEERGRLFKD 447
>gi|251772197|gb|EES52767.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospirillum
ferrodiazotrophum]
Length = 488
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 127/395 (32%), Positives = 193/395 (48%), Gaps = 53/395 (13%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA- 86
+ EL++AA + R ++A+ GTNGKST VG +L G F+GGN G P SE
Sbjct: 100 IRGELEWAASLWDR--PVVAIGGTNGKSTTTALVGHLLKSAGFSPFIGGNFGVPFSEGVR 157
Query: 87 -FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALT 145
+ F VAV+EVSS+Q E + F P + ++LN+TPDHL+R+ ++ Y L
Sbjct: 158 LMRTARKEGKRDPFDVAVIEVSSFQTE-SMQSFSPDIYLLLNITPDHLDRYDSLAQYRLA 216
Query: 146 KCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVG 205
K H+ S + + E + ++G S E+P G
Sbjct: 217 KLHVASLFSPSTTVIWNASQDDWREWGPRTKARSVFVG--------------SAELPGPG 262
Query: 206 VV---SQLQLHNM-----------KVMGRHNYHNAAVAALS--VLGLDIG--VDVEALNS 247
VV S LQ H + +++G N N A + L+ +LG +G +D L
Sbjct: 263 VVLSGSHLQSHGLRDSFSVSTAGYRLIGGGNLQNLAFSVLATILLGETMGRRIDPGILEE 322
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATN---LEATCTGLMDLKGHKCVILLGGQAK 304
I PHRM+ V ++GVT+V+DSKATN +EA GL D+ GH V+L
Sbjct: 323 AIASFTGLPHRMERVA-TVRGVTFVNDSKATNVGAVEAALAGLSDV-GHPHVVL------ 374
Query: 305 VLNGQESNGFEKLIEPL--NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNH 362
++ G++ G + + P NH R V+ G + I + L G IP ++ +AV
Sbjct: 375 IMGGRDKGGSYRPLIPWLKNHVREVVAIGEAREKIRRDL---GKEIPIEEAQDLFEAVAR 431
Query: 363 ARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
A +A +G+ ++LSP C+S+D F +E RG F+E
Sbjct: 432 AFSVADSGEMVLLSPACSSYDMFHGYEERGERFRE 466
>gi|33593956|ref|NP_881600.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
pertussis Tohama I]
gi|384205260|ref|YP_005590999.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
pertussis CS]
gi|62900577|sp|Q7VUQ1.1|MURD_BORPE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|33564030|emb|CAE43296.1| putative peptidoglycan synthesis protein [Bordetella pertussis
Tohama I]
gi|332383374|gb|AEE68221.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
pertussis CS]
Length = 510
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 135/390 (34%), Positives = 190/390 (48%), Gaps = 48/390 (12%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
++LA+TGTNGK+TV Q++ G+ A GN+ +P + AA P QV V
Sbjct: 132 RVLAITGTNGKTTVTALTRQLIEAGGMSARAAGNI-SPAALAALMDALDQDDLP--QVWV 188
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS----HMVNTKLG 159
+E+SS+Q+E + P +VVLN+T DHL+ H M+ YA K + +VN
Sbjct: 189 LELSSFQLET-TRTLAPDAAVVLNVTQDHLDWHGDMQAYAQAKARILKPARLAIVNRDDP 247
Query: 160 L---LPFGNQHLNEAIKGHRF-------------NLAWIGAFPGVKIDTEA------KTA 197
L + Q LN G +AW+ A D A K A
Sbjct: 248 LAVAMVESLQALNVRSFGRDVPALVGDMGLELGQGVAWLTACESNDFDEPAPAPRRKKDA 307
Query: 198 SFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
A G +S+L + +++ G HN NA A LD+G + T+ P
Sbjct: 308 PPPTRAGGRMSRLMPVDALRIRGVHNALNALAAMQLARSLDLGWG--PMLRTLRDYAGEP 365
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK 316
HR ++V R I V +++DSK TN+ AT L L G + V++ GGQ K GQ+ F
Sbjct: 366 HRAELV-RSIGDVDYINDSKGTNVGATVAALEGL-GQQVVLIAGGQGK---GQD---FSP 417
Query: 317 LIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
L+ + H R V+ G G I K L G +PC A A+M++AV A +A GDA++L
Sbjct: 418 LVPVVRRHARAVVLIGVDGAAIGKVLEPTG--VPCAAAADMREAVRRAAELAQPGDAVLL 475
Query: 376 SPGCASFDEFRNFEHRGMVF----QELAFS 401
SP CASFD FRN+ HRG VF +ELA
Sbjct: 476 SPACASFDMFRNYPHRGEVFAAEVRELALD 505
>gi|433655384|ref|YP_007299092.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Thermoanaerobacterium thermosaccharolyticum M0795]
gi|433293573|gb|AGB19395.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Thermoanaerobacterium thermosaccharolyticum M0795]
Length = 454
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 124/382 (32%), Positives = 199/382 (52%), Gaps = 35/382 (9%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+ E++FA ++ I A+TGTNGK+T + +G++ + G+ +V GN+G PL E
Sbjct: 92 GIEVIGEVEFAYRL--SKAPIYAITGTNGKTTTTSLLGEIFKNSGVRTYVAGNIGYPLVE 149
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
AA V V E+SS+Q+E K F P +S ++N+TPDHL RHKT++NY
Sbjct: 150 AAVKA-------GNDDVIVAEISSFQLETI-KEFRPVISAIINITPDHLNRHKTLENYIN 201
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K +F + + +L + +++++ F A FP + + E +
Sbjct: 202 IKGRIFENQSFNEYTVLNYDDKNMSSL-----FKKAKCKVFPFSRAKVLDQGTYIENGKI 256
Query: 205 GVVSQLQLHNMKVM-------GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
V+S N + G HN NA VA S + G+DV +N+T++ + H
Sbjct: 257 -VISLNGEKNTIIDIDDIYIPGNHNVENAMVA--STMAFLAGIDVNTINTTLKTFKGVEH 313
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R++ V R I GV + +DSK TN +A + +KG +++ GG K ++ F++
Sbjct: 314 RIEFV-RSINGVKYYNDSKGTNPDAAIKAIEAMKG-PIILIAGGYDKGVS------FDEF 365
Query: 318 IEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVAN-MKDAVNHARRMATNGDAIVL 375
N R +I G + LI+++ V NG S V N + DAV A +M+ GD ++L
Sbjct: 366 TSSFNGRVRKLILLGETKDLIYESAVKNGFSREDITVVNSLDDAVYAAYKMSMPGDNVLL 425
Query: 376 SPGCASFDEFRNFEHRGMVFQE 397
SP CAS+D F+NFE RG +F++
Sbjct: 426 SPACASWDMFKNFEERGKLFKD 447
>gi|408416919|ref|YP_006627626.1| peptidoglycan synthesis protein [Bordetella pertussis 18323]
gi|401779089|emb|CCJ64572.1| putative peptidoglycan synthesis protein [Bordetella pertussis
18323]
Length = 510
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 135/392 (34%), Positives = 191/392 (48%), Gaps = 52/392 (13%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
++LA+TGTNGK+TV Q++ G+ A GN+ +P + AA P QV V
Sbjct: 132 RVLAITGTNGKTTVTALTRQLIEAGGMSARAAGNI-SPAALAALMDALDQDDLP--QVWV 188
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS------------ 151
+E+SS+Q+E + P +VVLN+T DHL+ H M+ YA K +
Sbjct: 189 LELSSFQLET-TRTLAPDAAVVLNVTQDHLDWHGDMQAYAQAKARILKPARLAIVNRDDP 247
Query: 152 ---HMVNT--KLGLLPFGNQHLNEAIKGHRF-----NLAWIGAFPGVKIDTEA------K 195
MV + L + FG A+ G +AW+ A D A K
Sbjct: 248 LTVAMVESLQALNVRSFGRDV--PALVGDMGLELGQGVAWLTACESNDFDEPAPAPRRKK 305
Query: 196 TASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
A A G +S+L + +++ G HN NA A LD+G + T+
Sbjct: 306 DAPPPTRAGGRMSRLMPVDVLRIRGVHNALNALAAMQLARSLDLGWG--PMLRTLRDYAG 363
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGF 314
PHR ++V R I V +++DSK TN+ AT L L G + V++ GGQ K GQ+ F
Sbjct: 364 EPHRAELV-RSIGDVDYINDSKGTNVGATVAALEGL-GQQVVLIAGGQGK---GQD---F 415
Query: 315 EKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
L+ + H R V+ G G I K L G +PC A A+M++AV A +A GDA+
Sbjct: 416 SPLVPVVRRHARAVVLIGVDGAAIGKVLEPTG--VPCVAAADMREAVRRAAELAQPGDAV 473
Query: 374 VLSPGCASFDEFRNFEHRGMVF----QELAFS 401
+LSP CASFD FRN+ HRG VF +ELA
Sbjct: 474 LLSPACASFDMFRNYPHRGEVFAAEVRELALD 505
>gi|218780973|ref|YP_002432291.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfatibacillum
alkenivorans AK-01]
gi|254766048|sp|B8FBS0.1|MURD_DESAA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|218762357|gb|ACL04823.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfatibacillum
alkenivorans AK-01]
Length = 450
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 126/387 (32%), Positives = 200/387 (51%), Gaps = 39/387 (10%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L + G V+ E++ A++ I I+AVTGTNGK+TV + +G+M+ GI AFVGGN
Sbjct: 85 LEAAREKGVPVIGEVELASRFI--QAPIIAVTGTNGKTTVTSLIGEMMEASGISAFVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+GNPL + + K QV V E+SS+Q++ + F P V+++ N+T DH++R+
Sbjct: 143 IGNPL-------VNYAKGEDKAQVVVAEISSFQLDTI-ESFAPKVALLTNVTEDHMDRYD 194
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
M+ YA +K +F + +L G + A+ G W F G + + EA A
Sbjct: 195 GMEGYAASKARVFMNQTGADFAILN-GCDKWSRAMCGGIKASQWF--FTG-REEAEAGIA 250
Query: 198 SFEVPAVGVVSQLQLH------NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
A+ + Q H M + G HN NAA AAL+ VE + I+
Sbjct: 251 -MNAGAMDFFTGAQKHWSLSLKKMTLSGEHNKENAAAAALAAYAAG--ASVEGIQGAIDA 307
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQES 311
+ PHR++ V R++ V + DDSKATN++A L L+G + L ++ G++
Sbjct: 308 FKGLPHRLEFV-REVMDVKYYDDSKATNVDAV---LRALEGFNAPVHL-----IMGGRDK 358
Query: 312 NG-FEKLIEPLNHH--RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMAT 368
G F L + + R +T +G++ T +G S+ ++ AV A+R A
Sbjct: 359 GGHFRDLKDMVEQKAARLYVTGEAAGII---TSALSG-SVEVVQAGTIEKAVEFAKRAAR 414
Query: 369 NGDAIVLSPGCASFDEFRNFEHRGMVF 395
G+ +VLSPGCASFD+++N++ RG F
Sbjct: 415 PGEVVVLSPGCASFDQYKNYKERGKDF 441
>gi|390934668|ref|YP_006392173.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Thermoanaerobacterium saccharolyticum JW/SL-YS485]
gi|389570169|gb|AFK86574.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Thermoanaerobacterium saccharolyticum JW/SL-YS485]
Length = 454
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 201/376 (53%), Gaps = 23/376 (6%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+ E++FA ++ I A+TGTNGK+T + +G++ G + +V GN+G PL E
Sbjct: 92 GIDVIGEVEFAYRL--SKAPIYAITGTNGKTTTTSLLGEIFKASGAKTYVAGNIGYPLVE 149
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
AA + A V V E+SS+Q+E K F P +S ++N+TPDHL RHKT++NY
Sbjct: 150 AAINANAE-------DVIVAEISSFQLETI-KEFKPEISAIINITPDHLNRHKTLENYIE 201
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K +F + + + +L + +++++ K + N+ ++ T + + A
Sbjct: 202 IKGRIFENQTSDQFTVLNYDDKNISSLFKKAKCNVFPFSRNRVLEYGTYLENGKIIISAD 261
Query: 205 GVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
G + + ++ + G HN NA VAA + G+D++ +N T+ + HR++ V
Sbjct: 262 GEKKTIIDVEDIYIPGNHNVENAMVAA--TMAYLAGIDIKVINETLRTFKGVEHRIEFV- 318
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE-SNGFEKLIEPLN 322
R I GV + +DSK TN +A + +KG +++ GG K ++ E + F+ ++ L
Sbjct: 319 RTINGVKYYNDSKGTNPDAAIKAIEAMKG-PIILIAGGYDKGVSFDEFTASFKGRVKKL- 376
Query: 323 HHRCVITFGYSGVLIWKTLVNNGLS-IPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
I G + LI+K+ + G S V ++ DAV A A GD ++LSP CAS
Sbjct: 377 -----ILLGETKDLIYKSAIKEGYSEDDVIFVESIGDAVYAAYNAAKPGDNVLLSPACAS 431
Query: 382 FDEFRNFEHRGMVFQE 397
+D FRN+E RG +F++
Sbjct: 432 WDMFRNYEERGRLFKD 447
>gi|51246751|ref|YP_066635.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Desulfotalea
psychrophila LSv54]
gi|62900515|sp|Q6AJ52.1|MURD_DESPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|50877788|emb|CAG37628.1| related to UDP-N-acetylmuramoylalanine-D-glutamate ligase
[Desulfotalea psychrophila LSv54]
Length = 456
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 125/382 (32%), Positives = 188/382 (49%), Gaps = 29/382 (7%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
LA L ++G +V+ EL AA V+ R ++A+TGTNGK+TV + VG +L G FVGGN
Sbjct: 91 LARLRRAGVQVLGELALAAPVLDR--PVVAITGTNGKTTVTSLVGDLLRASGKRVFVGGN 148
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G PL + L SS + V V+EVSS+Q+E+ F P ++++LNL+PDHL+RH
Sbjct: 149 IGVPL-------LDLLSSGDEVDVIVLEVSSFQLELAGD-FSPHIALLLNLSPDHLDRHG 200
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
+ Y K HLF T + ++ G+ L G ++ F D
Sbjct: 201 DLAGYRAAKMHLFQKQGMTDIAIVS-GDDPLCLLSDGCGEASRYLFGFSAAS-DISVAAG 258
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG-VDVEALNSTIEILRTPP 256
FE G L + + R + NAA AA L D+E I
Sbjct: 259 HFEFDFAGQREIYSLRDSALDNRTGWLNAAPAAFIARSLACAKADIE---RGIAAFTLDA 315
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK 316
HRM+ V I GV + +DSKATN A + L L + +++ GG+ K + +
Sbjct: 316 HRMEPVA-SIAGVQYYNDSKATNTGAVISALQQLV--RVILIAGGRDK------GDNYRL 366
Query: 317 LIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
L E + H R +I G + L+ L + + + ++ +AV+ A A GD+++L
Sbjct: 367 LREAVAGHVRTLICIGEATPLLVAALED---VVQVYRATSLAEAVSLAASFAEEGDSVLL 423
Query: 376 SPGCASFDEFRNFEHRGMVFQE 397
SP CASFD F N++ RG F+
Sbjct: 424 SPACASFDMFANYQDRGEQFRR 445
>gi|86160187|ref|YP_466972.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter
dehalogenans 2CP-C]
gi|118595640|sp|Q2IG29.1|MURD_ANADE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|85776698|gb|ABC83535.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 462
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 126/395 (31%), Positives = 194/395 (49%), Gaps = 41/395 (10%)
Query: 22 LQSGKR----VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQML-NHLGIEAFVGG 76
+Q+ +R V E++ AA+ + + I+ +TGTNGKST G +L H FVGG
Sbjct: 87 IQAARRRGVPVWGEVELAARFL-GGLPIVGITGTNGKSTTTALTGALLARHR--RTFVGG 143
Query: 77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH 136
NLG PLSE S +P AVVE+SS+Q+E + F V+ VLN+TPDHL+R+
Sbjct: 144 NLGTPLSELVL------SGEPA-AAAVVELSSFQLEGIER-FRARVAAVLNVTPDHLDRY 195
Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQH---LNEAIKGHRFNLAWIGAFPGVKIDTE 193
+ YA K LF+ + + + + A +G + P D
Sbjct: 196 PDVDAYAAAKARLFATQEPDDVAVANARDPRALAMAGASRGDLHTFGFGAPVPASARDEG 255
Query: 194 AK-----TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
+ TA + P + QLHN + GRHN NA A L +GV EA+ +
Sbjct: 256 GEPGPGGTAIWYTPRGRAPERYQLHNRALRGRHNRENAMAAVLCAR--LMGVPGEAVQAG 313
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG--HKCVILLGGQAKVL 306
++ HR+++V + +GV WV+DSKATN+++T GL + V+++GG+ K
Sbjct: 314 LDAFPGLHHRLELVA-EGRGVEWVNDSKATNVDSTFVGLAAFPAGAPRVVLIMGGRGK-- 370
Query: 307 NGQESNGFEKLIEPLNHHR--CVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR 364
+ PL R ++T G I + L + + PC ++ AV A
Sbjct: 371 -----KAPYAPLRPLFGGRVKALLTIGEDAPAIERELGDLAPTEPC---GDLPGAVRRAA 422
Query: 365 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
++ GD ++LSP CAS+D+F ++E RG F+ LA
Sbjct: 423 VLSGPGDVVLLSPACASYDQFASYEERGEAFRRLA 457
>gi|229496695|ref|ZP_04390409.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
endodontalis ATCC 35406]
gi|229316592|gb|EEN82511.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
endodontalis ATCC 35406]
Length = 452
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 116/382 (30%), Positives = 201/382 (52%), Gaps = 26/382 (6%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
++ G V+SE++FA++ +P K+ A+TG+NGK+T V +V +L G +A + GN+G
Sbjct: 82 FIKRGISVISEIEFASRYLPEDTKVAAITGSNGKTTTVNWVTHILKTAGYDAAMCGNVG- 140
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TM 139
F L + P + VVE+SS+Q++ K F P VSV+LN+TPDHL+R+K
Sbjct: 141 ------FSMARLVAEDP-HKYYVVEMSSFQLDGTYK-FHPNVSVLLNITPDHLDRYKHKF 192
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFN---LAWIGAFPGVKIDTEAKT 196
+ YAL+K + + + + + + ++ H L + G K E+
Sbjct: 193 ELYALSKMRITQQLGKGDSFVYWEEDAFIKKYLEQHSMECTLLPFSLQTSGAKALYESDK 252
Query: 197 ASFEVPAVGVVSQLQL--HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
+ + A +S + ++ ++G+HN NA +AL + + GV E L + +
Sbjct: 253 ETLHIEAQHNLSAFSIPKRDLALVGKHNLLNAMASAL--VAREFGVSNEYLGKALRDFKN 310
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGF 314
PHR++ V +I GV +++DSKATN+++T L + + V++LGG K G +
Sbjct: 311 VPHRIEYV-AEIDGVRYINDSKATNIQSTFYAL-EAQTTPVVLILGGTDK---GNNYSEI 365
Query: 315 EKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 374
E ++ L+ R +I G + + +G +M + + HA+ +A +GD ++
Sbjct: 366 EDVV--LSKCRALIFMGIDNDKLHRAF--DGKIDQIRDARSMDECLTHAQELAQSGDVVL 421
Query: 375 LSPGCASFDEFRNFEHRGMVFQ 396
LSP CASFD F+N+E RG F+
Sbjct: 422 LSPACASFDLFKNYEDRGEQFK 443
>gi|302036130|ref|YP_003796452.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Candidatus
Nitrospira defluvii]
gi|300604194|emb|CBK40526.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Candidatus
Nitrospira defluvii]
Length = 462
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 197/383 (51%), Gaps = 27/383 (7%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G RV+ EL+ A++ + + ++AVTGTNGKST VT +G+ L G AFVGGNLG SE
Sbjct: 92 GVRVIGELELASRFL--TAPVVAVTGTNGKSTTVTLIGKFLQESGKRAFVGGNLGIAASE 149
Query: 85 AAFHCI-ALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
AA + A S ++ V+EVSS+Q+E + F P ++ +LN+T DH++R+ ++++Y
Sbjct: 150 AALTSVQAKAGSAAPYEYVVLEVSSFQLETTEQ-FHPWIAAILNVTLDHMDRYASVEDYV 208
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQH---LNEAIKGHRFNLAWIGA-FPGVKIDTEAKTASF 199
K +F++ L + L KG + GA GV T
Sbjct: 209 AAKATIFANQTAGDYSLFNLDDARVAALRGRTKGTVLGFSRSGATVSGVAGATVLDGDLI 268
Query: 200 EVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP-- 256
G ++ + +M+++G HN N V A GL G +EA+ + +LR+ P
Sbjct: 269 VTTVRGRREEICRRSDMRLIGLHNVEN--VMAAVTYGLLCGCSIEAVRA---VLRSFPGL 323
Query: 257 -HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
H +++V R+ +GV +V+DSK TN++A L + ++ GG+ K G + + E
Sbjct: 324 EHALEVV-RERRGVRFVNDSKGTNVDAVLKALEGID-QPIWLIAGGRDK---GGDFSRLE 378
Query: 316 KLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
+ I + +I G + I + G C A ++DAV A R A G+ ++L
Sbjct: 379 RAIR--ERVKGLILIGEAAGRIQAAM---GDFDRCRPAATLRDAVELAAREAQPGEVVLL 433
Query: 376 SPGCASFDEFRNFEHRGMVFQEL 398
SP CASFD F +++ RG F+ L
Sbjct: 434 SPACASFDMFADYQDRGRQFKAL 456
>gi|218961097|ref|YP_001740872.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
(UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
(D-glutamic acid adding enzyme) [Candidatus Cloacamonas
acidaminovorans]
gi|167729754|emb|CAO80666.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
(UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
(D-glutamic acid adding enzyme) [Candidatus Cloacamonas
acidaminovorans str. Evry]
Length = 472
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 114/385 (29%), Positives = 196/385 (50%), Gaps = 33/385 (8%)
Query: 21 LLQSGKR----VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG 76
+LQ K ++SE++ ++ + KI+AVTG+NGKST V+ + +L LG ++ + G
Sbjct: 103 ILQKAKEKNIELISEIELGYRIKAKDSKIIAVTGSNGKSTTVSLIHHILTGLGKKSLLAG 162
Query: 77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH 136
N+G+ AF + KP + V+E+SS+Q+++ N F P V+V+LN+TPDH++R+
Sbjct: 163 NIGD-----AFCSYDI--EKPGWDYIVLEISSFQLDLINS-FQPDVAVLLNITPDHIDRY 214
Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGN---QHLNEAIKGHRFNLAWIGAFPGVKIDTE 193
+ ++YAL+K ++F + T +L + + +H + IK + + P D
Sbjct: 215 NSFEDYALSKVNIFKNQEMTDTAVLFWDSPEVKHFTKDIKARKL---YFSLSPN---DNA 268
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
+ G +++ L + G HNY NA A L+V L + + ++ +
Sbjct: 269 FAYLANNYIQFGSETKVPLSYFAIKGPHNYANAMSAMLAVYAL--IPEPTKIAEAVKGFK 326
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
+ PHR++ V I+GV++ +DSKATN ++ + L + I++GG K G
Sbjct: 327 SLPHRLEYVDT-IKGVSFYNDSKATNTDSVRSALNSFE-QPIRIIMGGSDK--------G 376
Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
+ + + + V +G K IP +A+ + V A + GD I
Sbjct: 377 EDYSVLAADLQKKVKKAYLTGDTREKMRKTFSGKIPLECIADFELTVRKAFSDSDEGDII 436
Query: 374 VLSPGCASFDEFRNFEHRGMVFQEL 398
VLSP CASFD F N+E RG F+E+
Sbjct: 437 VLSPACASFDRFNNYEERGNFFKEI 461
>gi|373488415|ref|ZP_09579080.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Holophaga foetida
DSM 6591]
gi|372006740|gb|EHP07372.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Holophaga foetida
DSM 6591]
Length = 443
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 136/395 (34%), Positives = 194/395 (49%), Gaps = 54/395 (13%)
Query: 22 LQSGKRVMSELDFAAQVI----PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L G V+ EL+FA +V+ P ++ ILAVTGTNGKST + +L + A GN
Sbjct: 84 LGRGIPVLGELEFAHRVLRTQDPDAV-ILAVTGTNGKSTTTDLLAHLLRAADLPAVACGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
LG PL +A L ++P + A+ E SSYQ+E + F +V+LNLTPDHL RH
Sbjct: 143 LGTPLMDA------LKGAQPGTRYAL-ECSSYQLET-VREFHAQGAVLLNLTPDHLARHG 194
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNL---------AWIGAFPGV 188
+M+ Y K +F L L+P G N G R + AW AF +
Sbjct: 195 SMEGYLAAKLRVFERQEEGDLALMPMGATFENPG-HGRRADFGWSEPEGPGAWCDAFGML 253
Query: 189 KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDVEALN 246
+ T+A+ L +K+ G HN NA A+A S G D G + L
Sbjct: 254 WLRTDAQAQEL----------LHRSELKIPGDHNVENALAAIALASHGGADPGSLRQGLR 303
Query: 247 STIEILRTPPHRMQIV-HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKV 305
S + HR+ RD GV++ +DSK TN++AT T + L G V++LGG+ K
Sbjct: 304 SYPGLA----HRIAFCGERD--GVSFYNDSKGTNVDATLTAIKALSG-PLVLMLGGEDK- 355
Query: 306 LNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR 364
+E L L+ R ++ G + + + L + +P +V +A + A
Sbjct: 356 -----GASYEPLRAVLDGKLRRLVFLGDAIPQLERDLGD----LPHDSVWAFDEAFSLAC 406
Query: 365 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
R A GD ++LSP CASFD+FRNFE RG F+ LA
Sbjct: 407 RCAHPGDQVLLSPACASFDQFRNFEERGEHFEALA 441
>gi|312880220|ref|ZP_07740020.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminomonas
paucivorans DSM 12260]
gi|310783511|gb|EFQ23909.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminomonas
paucivorans DSM 12260]
Length = 462
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 129/393 (32%), Positives = 194/393 (49%), Gaps = 43/393 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G VM ELDF + + S+ L VTG+NGK+T + +G +L G+ V GN+GNP
Sbjct: 90 LSQGVEVMGELDFVSPFLRGSL--LGVTGSNGKTTTTSLIGHLLREEGVRVSVAGNIGNP 147
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
L+ A + + + V E+SS+Q+ + C +++VV NL PDH++ H + +
Sbjct: 148 LASAV---------REEAEWVVAELSSFQLHWARRLRC-SLAVVTNLAPDHIDWHGSYEA 197
Query: 142 YALTKCHLFSHMVNT---------KLGLLPFGNQHLNEAIKGHRFNLAWI----GAFPGV 188
Y K +L + T +L LLP +Q + L+W G GV
Sbjct: 198 YVDAKANLVRALDPTTGMAIVQRSELPLLPPVSQTI---------PLSWTEDGEGEEGGV 248
Query: 189 KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
+ + A P +G + ++G HN NAA+AA + L + + +
Sbjct: 249 TLIRSRREALLSFPGLGKRRLFSFDALSLLGDHNLENAAMAATATT-LVLKDAPKHVEEA 307
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG 308
+ PPHR Q+V R++ V +VDDSK TN+ AT T L L G K VILLGGQ K G
Sbjct: 308 LTRFVAPPHRCQLV-RELGKVRFVDDSKGTNVAATMTALTSLPGTK-VILLGGQGK---G 362
Query: 309 QESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMAT 368
+ K + R + FG G I K L + G V ++ +AV A A
Sbjct: 363 ESYGSLAKAV--TEWARFAVLFGEEGERIGKALDDAGYHRWSL-VRSLNEAVPLAYDKAE 419
Query: 369 NGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 401
GD+++LSP C S+D++RN++ RG F++LA S
Sbjct: 420 AGDSVLLSPACTSWDQYRNYKERGDHFRDLACS 452
>gi|158522799|ref|YP_001530669.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfococcus
oleovorans Hxd3]
gi|226711907|sp|A8ZXW5.1|MURD_DESOH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|158511625|gb|ABW68592.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfococcus
oleovorans Hxd3]
Length = 459
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 126/380 (33%), Positives = 193/380 (50%), Gaps = 35/380 (9%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G VM E++ AA+ + + + AVTGTNGK+TV T +G ML G + FVGGN+G PL
Sbjct: 93 EKGIPVMGEMELAARFVTKPVA--AVTGTNGKTTVTTLLGDMLKASGRQVFVGGNIGAPL 150
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
I +AVVEVSS+Q++ ++ F P V+V+LN+ DHL R+ Y
Sbjct: 151 -------IGFADKGENADMAVVEVSSFQLDT-SETFRPHVAVLLNIAEDHLARYVDFNAY 202
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR-----FNLAWIGAFPGVKIDT--EAK 195
+K +F + + ++ + H+ +A KG R FN V DT E
Sbjct: 203 VRSKGRIFENQEADDVAVINGADFHVLQASKGIRSRKLTFNAGKNTQDGAVIGDTAVEIV 262
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
TA + + V S L + RHN N +AA ++ L +G VE + + ++ +
Sbjct: 263 TAGTKTATISVTSPL------MRARHNMEN--IAAATLAALAMGATVEGIQAAVDGFQGL 314
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
HR++ V I V + DDSKATN +A L + + V+LLGG+ K G + +
Sbjct: 315 RHRLEYVA-SIDDVHYFDDSKATNPDAVRRAL-EFFTSRVVLLLGGEDK---GCDYGVLK 369
Query: 316 KLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
+I R V+ FG + I + NG S+ + +M +AV A +A GDA++L
Sbjct: 370 NVIR--ERARAVVLFGAAKEKIRMAI--NG-SVSLWDAGSMAEAVRRAHELAAPGDAVLL 424
Query: 376 SPGCASFDEFRNFEHRGMVF 395
SP C+SFD + ++ HRG F
Sbjct: 425 SPACSSFDSYESYAHRGDDF 444
>gi|319938114|ref|ZP_08012512.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Coprobacillus sp.
29_1]
gi|319806635|gb|EFW03284.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Coprobacillus sp.
29_1]
Length = 447
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 116/390 (29%), Positives = 201/390 (51%), Gaps = 46/390 (11%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G V +E++ A + + + +A+TGTNGK+T VT + +L + G + + GN+G
Sbjct: 87 LKERGIPVYTEIELAYR-LSQPQNYIAITGTNGKTTTVTLIRDILKNAGRQVCLAGNVGT 145
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
PLSE + L K + V V+E+S++Q+ + F P V+ ++NLTPDHL+ +++
Sbjct: 146 PLSELVLNEDLL--HKSDYDV-VLEMSNFQL-LDIDAFHPRVATIINLTPDHLDYMASLE 201
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFE 200
Y +K ++ + + + L + L E ++ +P +AK SF
Sbjct: 202 EYYTSKTRIYMNQDHNDIYLQNKDDVVLKE----------YLQKYP-----PQAKIVSFS 246
Query: 201 VP----------AVGVVSQ--LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
+ A+ Q + L ++K++GRHN N +A + + G+DV++++ T
Sbjct: 247 LEQEADCMIKNDAIYYQGQHIINLDDIKIVGRHNIQNMMIAICACIHS--GIDVQSIHDT 304
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG 308
+ HR++ V R+ QGV + +DSKATN +A L + ++L+GG K L+
Sbjct: 305 LAAFTGVEHRIEFV-REYQGVKYYNDSKATNTDAAIIALKSFE-KPVILLMGGHEKGLDL 362
Query: 309 QESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMAT 368
+E ++K I L I FG +G K + I V MKDA+ A+ +A
Sbjct: 363 REMANYQKQISHL------ICFGEAGERFAKDMKCPNTDI----VKYMKDAIIKAKELAK 412
Query: 369 NGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
+GD ++LSP +S+DEF +E RG VF+ +
Sbjct: 413 SGDVVLLSPSTSSYDEFSGYEERGNVFKHI 442
>gi|54298605|ref|YP_124974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
pneumophila str. Paris]
gi|62900489|sp|Q5X1S4.1|MURD_LEGPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|53752390|emb|CAH13822.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
pneumophila str. Paris]
Length = 447
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 117/395 (29%), Positives = 192/395 (48%), Gaps = 63/395 (15%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q+G + +++ A+ I S ++A+TGTNGKSTV T VG+M G V GN+G P+
Sbjct: 87 QAGASIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ + + + + V+E+SS+Q+++ P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
K Q + K FN + P T+ K SF +
Sbjct: 197 TQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQTDIKCISFGKD 237
Query: 201 VPAVG---VVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
P++G ++ Q L + ++ + G HN+ NA A G+ ++
Sbjct: 238 APSMGNWGLIEQENTTYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
+ + ++ PHR Q V R++ GV W++DSK TN+ AT + + + G K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354
Query: 302 QAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAV 360
Q K + F++L +P++ R ++ G I L +P ++++ AV
Sbjct: 355 QGKGAD------FQELAQPVSEFVRSIVLIGEDADKIESALAK---VVPVVRASSLEGAV 405
Query: 361 NHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
A+ A GD ++LSP CAS D FR+F HRG VF
Sbjct: 406 TIAKTCAKPGDVVLLSPACASLDMFRDFNHRGDVF 440
>gi|297539594|ref|YP_003675363.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera
versatilis 301]
gi|297258941|gb|ADI30786.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera
versatilis 301]
Length = 452
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 123/382 (32%), Positives = 196/382 (51%), Gaps = 38/382 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+Q G V +++ AQ P S K++A+TG NGK+TV T VG++ G++ V GN+G P
Sbjct: 90 VQRGVSVAGDVELFAQYRPTSAKVIAITGANGKTTVTTLVGEICKAAGLKTIVAGNIGLP 149
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ + AL P V V+E+SS+Q+E + + +LNL+ DH++R+ + ++
Sbjct: 150 VLD------ALMMETP--DVYVLELSSFQLETTSNLQI-DAATMLNLSEDHMDRYASFQD 200
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
YA+ K +F N KL +L N+ ++ R LA + +D + + S+ +
Sbjct: 201 YAIAKARIF---YNAKLQVL---NRDDAWSMMMARPKLAQV----TFGLDDDGEETSYGL 250
Query: 202 PAV--------GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
V G + L ++K++G HN NA A G IGVD + T+ +
Sbjct: 251 KQVDGDTWLCEGDKELINLQDLKIVGLHNAANALAAVALCRG--IGVDYAHIIQTLYNFK 308
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
PHR++ V +I V + DDSK TN+ ATC L L K V++ GG K GQ+
Sbjct: 309 GLPHRVEWVA-NIDDVDYYDDSKGTNVGATCAALTGL-AQKVVLIAGGDGK---GQDFTP 363
Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
+ +I G LI L+ +IP + A++ +AVN A+++A +A+
Sbjct: 364 LAAAVAENASAVVLI--GRDAPLIEAALLPT--NIPLYQAADLPEAVNIAKKLAKADEAV 419
Query: 374 VLSPGCASFDEFRNFEHRGMVF 395
+LSP CASFD F+N+ HR VF
Sbjct: 420 LLSPACASFDMFKNYVHRAEVF 441
>gi|269792481|ref|YP_003317385.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100116|gb|ACZ19103.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 462
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/386 (31%), Positives = 192/386 (49%), Gaps = 36/386 (9%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G + E+DF + ++ VTG+NGK+T + +G +LN G+ V GN+GNPL
Sbjct: 92 GMPTVGEVDFVFPFL--GSPVVGVTGSNGKTTTTSILGHVLNAAGVSTAVAGNIGNPLG- 148
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVS----VVLNLTPDHLERHKTMK 140
++P S + V E+SS+Q+ ++C S VV NL PDH++ H + +
Sbjct: 149 ------SVPLSGETPSLVVAELSSFQL-----HWCEEASFAGGVVTNLAPDHIDWHGSYE 197
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG--HRFNLAWIGAFPGVKIDTEAKTAS 198
NY L K L ++ + + G + L+W GV +D A+ A
Sbjct: 198 NYVLAKRRLIERTGPDGFAVVQLADLDILRGGSGSVRLYPLSWDKVEQGVHLDDAAQVAL 257
Query: 199 FEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+ G V +L + ++++GRHN NAA+ AL L + + + I PPH
Sbjct: 258 LLMN--GSVRELFRFDQVRLLGRHNLENAAM-ALCAANLVLNRPLNGEDGRIGEFMAPPH 314
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGF 314
R ++V R GVT+VDDSK TN+ AT T L LK G VILLGG+ K G++ +
Sbjct: 315 RCELVGR-YGGVTFVDDSKGTNVAATVTALRSLKCDPGGTKVILLGGRGK---GED---Y 367
Query: 315 EKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
+ L + ++ + +G G I + L G + V ++ +AV A + GD I
Sbjct: 368 QVLAQTVSEECSYAVLYGEEGDRIAEALSKAGFN-RWSRVGSLDEAVRVAFQRTKEGDMI 426
Query: 374 VLSPGCASFDEFRNFEHRGMVFQELA 399
+LSP C S+D++ N++ RG F+ LA
Sbjct: 427 LLSPACTSWDQYPNYKERGYHFRRLA 452
>gi|94970658|ref|YP_592706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
Koribacter versatilis Ellin345]
gi|122063234|sp|Q1IKG8.1|MURD_ACIBL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|94552708|gb|ABF42632.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
Koribacter versatilis Ellin345]
Length = 453
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 113/380 (29%), Positives = 185/380 (48%), Gaps = 30/380 (7%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V+ E++ AAQ +P + +A+TG+NGK+T + G +L G + VGGN+G P
Sbjct: 90 KQGIPVIGEIELAAQFVPGHV--IAITGSNGKTTTTSLCGDILQSGGKKTLVGGNIGTP- 146
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
I+ +V+E+SS+Q+E + F P ++ +LN+TPDHL+RH T + Y
Sbjct: 147 ------AISFAQLANDDTWSVLEISSFQLETIER-FRPEIAAILNITPDHLDRHGTFEKY 199
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS--FE 200
A K +F + +L N+ E K + + W VK T + F
Sbjct: 200 AAAKERIFENQREHDFAILNADNEPCVEIAKRVKSQVLWFSRQHEVKHGTFVREDKIYFR 259
Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
P G + + +M + G HN N V A +G+ V E + + + HR++
Sbjct: 260 DPK-GEREIMPVADMLLKGAHNVEN--VLAAVCVGVAASVAPEQIRKAVSQFKAVEHRLE 316
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP 320
++GV + +DSKATN++AT L K V L +L G++ ++
Sbjct: 317 YTA-TVKGVDYYNDSKATNVDATIKALESFS--KGVHL------ILGGKDKGSPYTVLND 367
Query: 321 LNHHRC--VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
L H R V T G + I + + +++AV A + A GD ++L+P
Sbjct: 368 LLHERAKTVYTIGAAAAKIEAEV----KGVEVVHAETLENAVKLASQKAVKGDVVLLAPA 423
Query: 379 CASFDEFRNFEHRGMVFQEL 398
CASFD+F+++EHRG +F+EL
Sbjct: 424 CASFDQFQSYEHRGRIFKEL 443
>gi|33861920|ref|NP_893481.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
gi|60390532|sp|Q7V0A5.1|MURD_PROMP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|33640288|emb|CAE19823.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 473
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 115/389 (29%), Positives = 194/389 (49%), Gaps = 33/389 (8%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G V+ E++ A + + ++I + +TGTNGK+TV + +L + A GN+G
Sbjct: 99 LKERGIVVIGEINIAWESL-KNINWIGITGTNGKTTVTHLLSHILRENNLFAPFAGNIGT 157
Query: 81 PLSEAAFHCIALPSSKPK-FQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTM 139
PL E A+ S+K K V E+SS+Q+EI P + + TPDHL+RHKT+
Sbjct: 158 PLCEIAY------STKSKNIDWIVAELSSFQIEIATHCIKPKIGIWTTFTPDHLDRHKTL 211
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
NY K L ++ + + +Q+L E K N WI P V +++ +
Sbjct: 212 DNYFKIKNSLLKQ---SEFRIYNYDDQYLKENFKS-LLNGIWITTNPNV---SDSDHCDY 264
Query: 200 EVPAVGVVSQ-----LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
+ + + L L N K+ G HN N +A + IG+ E + + +
Sbjct: 265 WINNENFIVERREKLLSLKNFKLKGNHNTQNLLLAVAA--ARKIGLSTERIKNALLSYEQ 322
Query: 255 PPHRMQ-IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
PHRM+ I RD + ++DSKATN +++ G+ +KG +I+ GG+ K NG +S
Sbjct: 323 LPHRMETIFQRDELEI--INDSKATNFDSSVAGINAIKGSP-IIISGGRLK--NG-DSIE 376
Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN--GD 371
+ K+I + V FG S + K ++ G ++ + +N+A N +
Sbjct: 377 WVKIINK--KAKAVFLFGESSQTLKKLILEGGFKNDILTFNDLSEVINYAYSYIKNNQSE 434
Query: 372 AIVLSPGCASFDEFRNFEHRGMVFQELAF 400
++ SP C+SFD+FR++E RG +F++L +
Sbjct: 435 TLLFSPSCSSFDQFRDYEQRGDIFKKLIY 463
>gi|148358649|ref|YP_001249856.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila
str. Corby]
gi|296108261|ref|YP_003619962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
pneumophila 2300/99 Alcoy]
gi|148280422|gb|ABQ54510.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila
str. Corby]
gi|295650163|gb|ADG26010.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
pneumophila 2300/99 Alcoy]
Length = 447
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 116/395 (29%), Positives = 192/395 (48%), Gaps = 63/395 (15%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q+G + +++ A+ I S ++A+TGTNGKSTV T VG+M G V GN+G P+
Sbjct: 87 QAGASIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ + + + + V+E+SS+Q+++ P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
K ++S K FN + P + K SF +
Sbjct: 197 TQAKQRIYS-------------------GAKAVLFNREDVYTVPHQSCQADIKCISFGKD 237
Query: 201 VPAVG---VVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
P++G ++ Q L + ++ + G HN+ NA A G+ ++
Sbjct: 238 APSMGNWGLIEQENTTYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
+ + ++ PHR Q V R++ GV W++DSK TN+ AT + + + G K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354
Query: 302 QAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAV 360
Q K + F++L +P++ R ++ G I L +P ++++ AV
Sbjct: 355 QGKGAD------FQELAQPVSEFVRSIVLIGEDADKIESALAK---VVPVVRASSLEGAV 405
Query: 361 NHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
A+ A GD ++LSP CAS D FR+F HRG VF
Sbjct: 406 TIAKTCAKPGDVVLLSPACASLDMFRDFNHRGDVF 440
>gi|253998170|ref|YP_003050233.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylovorus
glucosetrophus SIP3-4]
gi|253984849|gb|ACT49706.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylovorus
glucosetrophus SIP3-4]
Length = 460
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 126/393 (32%), Positives = 185/393 (47%), Gaps = 56/393 (14%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L +G +V+ +++ AQ PRS K++A+TG NGK+TV T VG+M G++ V GN+G P
Sbjct: 89 LANGIQVVGDVELFAQFRPRSSKVIAITGANGKTTVTTLVGEMCKAAGLKTVVAGNIGLP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ +A + V V+E+SS+Q+E P + VLN+T DH++R+ M
Sbjct: 149 VLDALRQV----ETDGAPDVYVLELSSFQLET-TSSLAPDAAAVLNVTEDHMDRYPGMPE 203
Query: 142 YALTKCHLF------------SHMVNTKLGLLPFGNQHLNEAIKGHRFNLA------WIG 183
YA K + + N L P L+ ++ H + L W+
Sbjct: 204 YAAAKARILKGAGVQVLNREDAWCRNMALPDQPMVTFGLDLPVESHAYGLLALRDQLWL- 262
Query: 184 AFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVE 243
A G L + +++ G HN NA A IGVD
Sbjct: 263 -------------------AQGAHPILHVEELRIPGLHNAANALAALALCRA--IGVDWA 301
Query: 244 ALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQA 303
L + + PHR++ V D+ + + DDSK TN+ ATC L L K V++ GG
Sbjct: 302 PLQHVLREFKGLPHRVEWVA-DLHDIAFYDDSKGTNVGATCAALAGLP-RKVVLIAGGDG 359
Query: 304 KVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNH 362
K GQ+ F L EP++ + R V+ G LI L G +P +M+DAV
Sbjct: 360 K---GQD---FSPLREPVDQNARAVVLIGRDATLIEAAL--QGSPVPRLHAESMEDAVQQ 411
Query: 363 ARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
A A GDA++LSP CASFD FRN+ HR +F
Sbjct: 412 AYAAALAGDAVLLSPACASFDMFRNYAHRAEIF 444
>gi|397668289|ref|YP_006509826.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Legionella
pneumophila subsp. pneumophila]
gi|395131700|emb|CCD09993.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Legionella
pneumophila subsp. pneumophila]
Length = 447
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 116/395 (29%), Positives = 191/395 (48%), Gaps = 63/395 (15%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q+G + +++ A+ I S ++A+TGTNGKSTV T VG+M G V GN+G P+
Sbjct: 87 QAGASIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ + + + + V+E+SS+Q+++ P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
K Q + K FN + P + K SF +
Sbjct: 197 TQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQADIKCISFGKD 237
Query: 201 VPAVG---VVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
P++G ++ Q L + ++ + G HN+ NA A G+ ++
Sbjct: 238 APSMGNWGLIEQENTTYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
+ + ++ PHR Q V R++ GV W++DSK TN+ AT + + + G K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354
Query: 302 QAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAV 360
Q K + F++L +P++ R ++ G I L +P ++++ AV
Sbjct: 355 QGKGAD------FQELAQPVSEFVRSIVLIGEDADKIESALAK---VVPVVRASSLEGAV 405
Query: 361 NHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
A+ A GD ++LSP CAS D FR+F HRG VF
Sbjct: 406 TIAKTCAKPGDVVLLSPACASLDMFRDFNHRGDVF 440
>gi|52842822|ref|YP_096621.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|378778511|ref|YP_005186950.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila
subsp. pneumophila ATCC 43290]
gi|62900494|sp|Q5ZSA3.1|MURD_LEGPH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|52629933|gb|AAU28674.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|364509327|gb|AEW52851.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila
subsp. pneumophila ATCC 43290]
Length = 447
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 116/395 (29%), Positives = 191/395 (48%), Gaps = 63/395 (15%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q+G + +++ A+ I S ++A+TGTNGKSTV T VG+M G V GN+G P+
Sbjct: 87 QAGASIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ + + + + V+E+SS+Q+++ P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
K Q + K FN + P + K SF +
Sbjct: 197 TQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQADIKCISFGKD 237
Query: 201 VPAVG---VVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
P++G ++ Q L + ++ + G HN+ NA A G+ ++
Sbjct: 238 APSMGNWGLIEQENTTYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
+ + ++ PHR Q V R++ GV W++DSK TN+ AT + + + G K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354
Query: 302 QAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAV 360
Q K + F++L +P++ R ++ G I L +P ++++ AV
Sbjct: 355 QGKGAD------FQELAQPVSEFVRSIVLIGEDADKIESALAK---VVPVVRASSLEGAV 405
Query: 361 NHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
A+ A GD ++LSP CAS D FR+F HRG VF
Sbjct: 406 TIAKTCAKPGDVVLLSPACASLDMFRDFNHRGDVF 440
>gi|429727328|ref|ZP_19262102.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Peptostreptococcus anaerobius VPI 4330]
gi|429152780|gb|EKX95590.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Peptostreptococcus anaerobius VPI 4330]
Length = 457
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 205/380 (53%), Gaps = 29/380 (7%)
Query: 26 KRVMSELDFAAQV-IPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
K+V+SE++ A Q + ++I+ + +TGTNGK+T + VG++ G+E +V GN+GNP
Sbjct: 94 KKVISEIELAYQAGLKKNIRFVGITGTNGKTTTTSLVGEIFKAQGVETYVVGNIGNP--- 150
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
A + + V V E+SS+Q+E + F PT S VLNLT DHL RH TM+NYA+
Sbjct: 151 -AIEAVEMAGDGA---VLVTELSSFQLESID-MFSPTASTVLNLTEDHLNRHHTMENYAM 205
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP----GVKIDTEAK-TASF 199
K +F + ++ + +L + + +G ++ + G+ +D + +
Sbjct: 206 AKARIFENQIDDTVCILNYDDLTTRSMAEGCHADVVFFSRKDKFERGIYLDDDNNIIVNN 265
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
E+ + + L+ + + G HN N +AA+ L L +GV++E L ++ + HR+
Sbjct: 266 EIEEIAL---LKADELSLPGGHNLEN-CMAAIG-LTLALGVEIEVLVKVLKTFKAVEHRL 320
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319
+ V ++GV +V+DSK TN ++T + K +++ GG K + F +L E
Sbjct: 321 EYVDT-VKGVKYVNDSKGTNPDSTIKAVQSYK-DPIILIAGGYDK------GSDFNELFE 372
Query: 320 -PLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
++ R V+ G +G LI +T +G + + V ++K+AV + ++A D ++LSP
Sbjct: 373 IAKDYVRSVVILGQTGDLIEETARKHGFT-DLYRVNDLKEAVEKSAQIANEKDIVLLSPA 431
Query: 379 CASFDEFRNFEHRGMVFQEL 398
CAS+ + N+E RG F+ L
Sbjct: 432 CASWGMYNNYEERGREFKNL 451
>gi|307611494|emb|CBX01167.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
pneumophila 130b]
Length = 447
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 116/395 (29%), Positives = 191/395 (48%), Gaps = 63/395 (15%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q+G + +++ A+ I S ++A+TGTNGKSTV T VG+M G V GN+G P+
Sbjct: 87 QAGASIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ + + + + V+E+SS+Q+++ P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
K Q + K FN + P + K SF +
Sbjct: 197 TQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQADIKCISFGKD 237
Query: 201 VPAVG---VVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
P++G ++ Q L + ++ + G HN+ NA A G+ ++
Sbjct: 238 APSMGNWGLIEQENTIYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
+ + ++ PHR Q V R++ GV W++DSK TN+ AT + + + G K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354
Query: 302 QAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAV 360
Q K + F++L +P++ R ++ G I L +P ++++ AV
Sbjct: 355 QGKGAD------FQELAQPVSEFVRSIVLIGEDADKIESALAK---VVPVVRASSLEGAV 405
Query: 361 NHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
A+ A GD ++LSP CAS D FR+F HRG VF
Sbjct: 406 TIAKTCAKPGDVVLLSPACASLDMFRDFNHRGDVF 440
>gi|54295453|ref|YP_127868.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
pneumophila str. Lens]
gi|62900487|sp|Q5WTI5.1|MURD_LEGPL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|53755285|emb|CAH16779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
pneumophila str. Lens]
Length = 447
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 116/395 (29%), Positives = 191/395 (48%), Gaps = 63/395 (15%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q+G + +++ A+ I S ++A+TGTNGKSTV T VG+M G V GN+G P+
Sbjct: 87 QAGALIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ + + + + V+E+SS+Q+++ P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
K Q + K FN + P + K SF +
Sbjct: 197 TQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQADIKCISFGKD 237
Query: 201 VPAVG---VVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
P++G ++ Q L + ++ + G HN+ NA A G+ ++
Sbjct: 238 APSMGNWGLIEQENTIYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
+ + ++ PHR Q V R++ GV W++DSK TN+ AT + + + G K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354
Query: 302 QAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAV 360
Q K + F++L +P++ R ++ G I L +P ++++ AV
Sbjct: 355 QGKGAD------FQELAQPVSEFVRSIVLIGEDADKIESALAK---VVPVVRASSLEGAV 405
Query: 361 NHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
A+ A GD ++LSP CAS D FR+F HRG VF
Sbjct: 406 TIAKTCAKPGDVVLLSPACASLDMFRDFNHRGDVF 440
>gi|329895277|ref|ZP_08270919.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
proteobacterium IMCC3088]
gi|328922399|gb|EGG29742.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
proteobacterium IMCC3088]
Length = 452
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 122/376 (32%), Positives = 189/376 (50%), Gaps = 34/376 (9%)
Query: 24 SGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
SG V+ +LD + ++ +TG+NGKSTV T VG+ML G+ A VGGNL S
Sbjct: 98 SGASVLGDLDLFMEAA--KAPVIGITGSNGKSTVTTLVGEMLAKAGLRAAVGGNL----S 151
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
AA + +V V+E+SS+Q+E N V+VVLN+T DH++ H +M Y
Sbjct: 152 PAALAIL-----DDDIEVYVLEMSSFQLERSNALGL-DVAVVLNVTADHIDHHGSMAAYH 205
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203
K +F ++ + L + + + GA D E K + +
Sbjct: 206 AAKHRIF----RKAKAVVVNDDDVLTQPLVDSTVQVTRYGA--KAHRDAEFKLLN-DALW 258
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
+GV + + M + GRHN+ NA VA D+ EA+ +T+ PHR ++V
Sbjct: 259 MGVSKIIDVSEMALRGRHNHLNALVACAIAACFDVAA--EAMAATLRTFSGLPHRCRVVQ 316
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
I GVT+++DSKATN+ A + + + ++LL G + GQ+ F L+ +N
Sbjct: 317 T-IAGVTYINDSKATNVGAALAAIEGIGPNSDLVLLAG--GLGKGQD---FSALVPAINR 370
Query: 324 H-RCVITFG-YSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ R VI FG +G L L+ P V N++ AV+ A +A GD ++LSP CAS
Sbjct: 371 YVREVIVFGEAAGELAALPLLR-----PAIQVENLQQAVSRAAEIAQPGDTVLLSPACAS 425
Query: 382 FDEFRNFEHRGMVFQE 397
D+F+N++ RG F +
Sbjct: 426 MDQFKNYQDRGDQFSD 441
>gi|421485324|ref|ZP_15932883.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Achromobacter
piechaudii HLE]
gi|400196243|gb|EJO29220.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Achromobacter
piechaudii HLE]
Length = 510
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 138/403 (34%), Positives = 192/403 (47%), Gaps = 55/403 (13%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
R +++L + PR +LAVTGTNGK+TV +++ G+ GN+ A
Sbjct: 118 RALADLAETREYRPR---LLAVTGTNGKTTVTALTRDLIDASGLSVVAAGNISPAALTAL 174
Query: 87 FHCI---ALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
+ ALP QV V+E+SS+Q+E + +VVLN+T DHL+ H M+ YA
Sbjct: 175 IDALDNDALP------QVWVLELSSFQLET-TRSLMADAAVVLNVTQDHLDWHGGMEAYA 227
Query: 144 LTKCHLFS---------------HMVNT--KLGLLPFGNQHLNEAIKGHRFNL----AWI 182
K L MV T L + FG + + E + L AW+
Sbjct: 228 EAKARLLKMARIAIVNRDDPLTVRMVQTVNALNVRSFG-RDMPELVGDMGLELGQGVAWL 286
Query: 183 GAFPGVKIDTEA------KTASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLG 235
A V D A K A V A G +S+L + +++ G HN NA A
Sbjct: 287 VAAEPVDFDEPAPPVRRKKDAPEPVRANGRMSRLMPVDALRIRGIHNALNALAALQLARC 346
Query: 236 LDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKC 295
LD+G A+ T+ PHR V R I GV +++DSK TN+ AT L L G
Sbjct: 347 LDLGWG--AMLRTLREYAGEPHRAAFV-RQIGGVDYINDSKGTNVGATVAALEGL-GQPV 402
Query: 296 VILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVA 354
V++ GGQ K GQ+ F LI ++ H R V+ G G I + L G++ C V
Sbjct: 403 VLIAGGQGK---GQD---FSPLIPVVSRHARAVMLIGVDGPEIGRVLAPTGVN--CITVD 454
Query: 355 NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
++ DAV A +A GDA++LSP CAS D FRN+ HRG VF E
Sbjct: 455 SLHDAVRGAAELAQPGDAVLLSPACASLDMFRNYPHRGQVFVE 497
>gi|444914629|ref|ZP_21234771.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cystobacter fuscus
DSM 2262]
gi|444714488|gb|ELW55369.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cystobacter fuscus
DSM 2262]
Length = 458
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 122/390 (31%), Positives = 185/390 (47%), Gaps = 31/390 (7%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L + +G V E++ A++ + + +L +TGTNGKST G++ G FVGGN
Sbjct: 87 LQSVRAAGVPVWGEVELASRFLAH-VPLLGITGTNGKSTTTALTGELFARGGRRTFVGGN 145
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
LG PLSEAA S + VVE+SS+Q+E + P S +LNLTPDHL+R+
Sbjct: 146 LGRPLSEAAL-------SPGDWDALVVELSSFQLEGIDT-LRPKGSAILNLTPDHLDRYA 197
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQ---HLNEAIKGHRFNLAWIG----AFPGVKI 190
Y K +F + ++ + L EA + + + G + P +
Sbjct: 198 DHAAYGAAKARIFKNQAAGDFAVVNADDADVMRLAEAARVPVYGFSLTGRPVVSAPVLAG 257
Query: 191 DTEAKTASFEVPAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
A+ F VG + L N + G HN NA AAL GV E + + +
Sbjct: 258 LAVARPGGFGFTGVGEADESFTLTNRALRGGHNAQNAMAAALLAR--LAGVSHEGVQAGL 315
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
+ PHR++ V R + GV WV+DSKATN+++ L +++ GG+ K
Sbjct: 316 DSYPGLPHRLESV-RVLGGVEWVNDSKATNVDSVLVALRAFS-RDVLLIAGGKGK----- 368
Query: 310 ESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMAT 368
+ ++E + V+T G L+ + C +A AV AR +A
Sbjct: 369 -GAPYAPMVEEGRGKVKMVLTIGQDAELLARAYEGAATVHACGTLAQ---AVRRARELAV 424
Query: 369 NGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
GD ++LSP CAS+D+F+NFEHRG F+ L
Sbjct: 425 AGDTVLLSPACASYDQFQNFEHRGDTFKRL 454
>gi|372268257|ref|ZP_09504305.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Alteromonas
sp. S89]
Length = 466
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 119/364 (32%), Positives = 178/364 (48%), Gaps = 39/364 (10%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-IALPSSKPKFQVA 102
KI+A+TG+NGKSTV T +G+M++ G VGGN+G P+ + C LP V
Sbjct: 115 KIIAITGSNGKSTVTTLMGEMVSAAGFSVEVGGNIGVPVLDMLAQCGTNLP------DVF 168
Query: 103 VVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKL 158
V+E+SS+Q+E P V+ +LN++ DH++R+ M Y K ++ H ++N
Sbjct: 169 VLELSSFQLET-TYSLAPDVATILNMSADHMDRYPNMAAYHQAKQRVYRHAQQLVINRAD 227
Query: 159 GLL--PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
L P G + + R +L G + + + A G L+ M
Sbjct: 228 PLTRGPLGKDRVEWSFGLDRPDLRQFGVI---------RDGADQWLAQGTEKLLRTDAMA 278
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
++G HN NA A G +G+++ A+ + HR + V DI GV +V+DSK
Sbjct: 279 MVGSHNIANALAALAL--GYAVGMEMPAMLQVLRQFTGLTHRCERVG-DIDGVVFVNDSK 335
Query: 277 ATNLEAT---CTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYS 333
TN+ AT GL D + K V++ GG K + F L E R ++T G
Sbjct: 336 GTNVGATRAALDGLADDE-RKIVLIAGGDGKGAD------FSPLGEAAGALRGLVTIGVD 388
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
G I + +P ++M DAV AR MA +GD ++LSP CASFD +RNFE RG
Sbjct: 389 GPKIASVFADR---VPQVTASDMTDAVAKARAMAHSGDFVLLSPACASFDMYRNFEARGE 445
Query: 394 VFQE 397
F+
Sbjct: 446 DFRR 449
>gi|397665206|ref|YP_006506744.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Legionella
pneumophila subsp. pneumophila]
gi|395128617|emb|CCD06835.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Legionella
pneumophila subsp. pneumophila]
Length = 447
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 116/395 (29%), Positives = 190/395 (48%), Gaps = 63/395 (15%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q G + +++ A+ I S ++A+TGTNGKSTV T VG+M G V GN+G P+
Sbjct: 87 QLGASIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ + + + + V+E+SS+Q+++ P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
K ++ K FN + P + K SF +
Sbjct: 197 TQAKHRIY-------------------RGAKAVLFNREDVYTVPHQSCQADIKCISFGKD 237
Query: 201 VPAVG---VVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
PA+G ++ Q L + ++ + G HN+ NA A G+ ++
Sbjct: 238 APAMGNWGLIEQENTTYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
+ + ++ PHR Q V R++ GV W++DSK TN+ AT + + + G K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354
Query: 302 QAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAV 360
Q K + F++L +P++ R ++ G I L +P ++++ AV
Sbjct: 355 QGKGAD------FQELAQPVSEFVRSIVLIGEDADKIESALAK---VVPVMRASSLEGAV 405
Query: 361 NHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
A+ A GD ++LSP CAS D FR+F HRG VF
Sbjct: 406 TIAKTCAKPGDVVLLSPACASLDMFRDFNHRGDVF 440
>gi|388457443|ref|ZP_10139738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Fluoribacter
dumoffii Tex-KL]
Length = 443
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 114/374 (30%), Positives = 182/374 (48%), Gaps = 61/374 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TGTNGKSTV T VG+M G + V GN+G P+ + + ++ + V+
Sbjct: 107 VIAITGTNGKSTVTTLVGEMAKAAGFKVAVAGNIGTPVLDMLY-------DGHQYDLWVL 159
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+++ P + +LN++PDHL+RH TM+ Y K ++ H L
Sbjct: 160 ELSSFQLDL-TYSLAPIAATILNVSPDHLDRHHTMEAYIQAKQRIY-HQAQVAL------ 211
Query: 165 NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA---VGVVSQ------------ 209
FN P ++D+ + A +VPA G+++Q
Sbjct: 212 ------------FNREDADTIPTTEVDSISFGA--DVPAGNNWGLITQEDKIYLAKGDAC 257
Query: 210 -LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQG 268
L + ++ + G HN+ NA A S L G+ + + + + PHR Q V R + G
Sbjct: 258 ILPVDSVLIKGVHNWLNALAA--SALVDAAGISHQHIKNVLTSFTGLPHRCQWV-RTLDG 314
Query: 269 VTWVDDSKATNLEATCTGLMDLKGH---KCVILLGGQAKVLNGQESNGFEKLIEPLNHH- 324
V W++DSK TN+ AT + + + G K V++ GGQ K + F +L +P+ +
Sbjct: 315 VDWINDSKGTNIGATISAINGIGGSMQGKIVLIAGGQGKGAD------FSELSQPIAEYV 368
Query: 325 RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 384
R +I G I L N +P +++ AV+ A+ A GD ++LSP CAS D
Sbjct: 369 RSIILIGEDADKIETALSN---VVPITRASSLDSAVSIAKSQAKPGDVVLLSPACASLDM 425
Query: 385 FRNFEHRGMVFQEL 398
FR+F HRG F L
Sbjct: 426 FRDFNHRGESFASL 439
>gi|229815102|ref|ZP_04445439.1| hypothetical protein COLINT_02144 [Collinsella intestinalis DSM
13280]
gi|229809332|gb|EEP45097.1| hypothetical protein COLINT_02144 [Collinsella intestinalis DSM
13280]
Length = 468
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 118/381 (30%), Positives = 192/381 (50%), Gaps = 27/381 (7%)
Query: 24 SGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
+ ++M E +FA + P + A+TGTNGK+TV + ++L G+++ GN+GN
Sbjct: 93 ASSQIMGEPEFAWLLSPE--RWCAITGTNGKTTVTSLTDELLRASGLDSVAVGNIGN--- 147
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
A H + + + + V E+SSYQ+ + F P V+V+LNL+PDHL H++ +NYA
Sbjct: 148 -APIHEV---DRREEGEWFVAELSSYQLAT-TEAFHPRVAVLLNLSPDHLAWHRSHENYA 202
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQ----HLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
L K +F +M + + ++ ++ +L+ R L A G +
Sbjct: 203 LAKIRMFKNMDDGDIAIVNVEDEGLSPYLDRICGPGRRVLHLGFADDGAADAAFVRDDVL 262
Query: 200 EVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
V G L ++ ++++G HN NA A+ + L G V + S + + PHR
Sbjct: 263 TVRMAGDEHALVRVDELRIVGAHNVLNALAASAAALA--CGASVTGVCSGLREFKPLPHR 320
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
++ V + GV +V+DSKATN +A T L G + V+LLGG K E+ +
Sbjct: 321 LEPVDT-VDGVRYVNDSKATNTDAVLTALAAFDGARIVLLLGGSDK------GTPLEEFM 373
Query: 319 EPLNHH-RCVITFGYSGVLIWKTLVN--NGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
+ CV+ FG + + L++ I +++DAV+ AR +A GD ++L
Sbjct: 374 AKVASRVACVVCFGEARERLRTALMDAPGATDIDIAEAEDLRDAVDVARSLAQRGDTVLL 433
Query: 376 SPGCASFDEFRNFEHRGMVFQ 396
SP CASFDEF FE RG F+
Sbjct: 434 SPACASFDEFSGFEERGEAFR 454
>gi|291288105|ref|YP_003504921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Denitrovibrio
acetiphilus DSM 12809]
gi|290885265|gb|ADD68965.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Denitrovibrio
acetiphilus DSM 12809]
Length = 416
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 126/379 (33%), Positives = 186/379 (49%), Gaps = 46/379 (12%)
Query: 30 SELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC 89
SE++ A P ++AVTGTNGKSTV T + Q+L G+EA GN+G P +EA
Sbjct: 70 SEIELADAKRPTDTVVVAVTGTNGKSTVTTLIAQILKKCGLEAVACGNIGLPYAEAV--- 126
Query: 90 IALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHL 149
+ + VVE+SS+Q + ++F VV NL DH++R++ M +YA
Sbjct: 127 -----TGGAYGAYVVELSSFQTGML-QHFSADCVVVTNLAEDHMDRYRDMDDYA------ 174
Query: 150 FSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPG--VKIDTEAKTASFEVPAVGVV 207
+ K+ LL F I+ + + + G V++ E +
Sbjct: 175 -----DDKMNLLRFLKPEGRLIIENDEYLVQKSSVYKGDTVRVLPEVNNGRLDFGHFYCT 229
Query: 208 SQLQLHNMKVMGRHNYHN---AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+ + G HN N A +AA S+ GL+ DV L + L HR +
Sbjct: 230 TD----KFPLKGEHNLLNLSFALLAADSIAGLE--GDVTYLTENLIGLE---HRCEFA-A 279
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH 324
+I GV +++DSK TN+ +T T L L VI+LGG+ K NG F L + +N
Sbjct: 280 EINGVEYINDSKGTNIHSTLTALKGLP-EGIVIILGGKDK--NGN----FAALKDVINE- 331
Query: 325 RC--VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASF 382
+C VIT+G +G I+ TL + +S+P + ++ AV +A G +VLSP CASF
Sbjct: 332 KCAGVITYGQAGEKIYSTL-KDIISVPLYKAEGLESAVRKGAEVAEAGQKVVLSPACASF 390
Query: 383 DEFRNFEHRGMVFQELAFS 401
DE R FEHRG F+EL S
Sbjct: 391 DEHRGFEHRGAHFKELVQS 409
>gi|289423178|ref|ZP_06424993.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Peptostreptococcus anaerobius 653-L]
gi|289156509|gb|EFD05159.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Peptostreptococcus anaerobius 653-L]
Length = 457
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 118/380 (31%), Positives = 205/380 (53%), Gaps = 29/380 (7%)
Query: 26 KRVMSELDFAAQV-IPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
K+V+SE++ A Q + ++I+ + +TGTNGK+T + VG++ G+E +V GN+GNP
Sbjct: 94 KKVISEIELAYQAGLKKNIRFVGITGTNGKTTTTSLVGEIFKAQGVETYVVGNIGNP--- 150
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
A + + V V E+SS+Q+E + F PT S VLNLT DHL RH TM+NYA
Sbjct: 151 -AIEAVEMAGDGA---VLVTELSSFQLESID-MFSPTASTVLNLTEDHLNRHHTMENYAK 205
Query: 145 TKCHLFSHMVNTKLGLLPFGN---QHLNEAIKGHRFNLAWIGAFP-GVKIDTEAK-TASF 199
K +F + V+ + +L + + + + E + F G+ +D + +
Sbjct: 206 AKARIFENQVDDTVCILNYDDPITRSMAEDCHADVVFFSRKDKFERGIYLDDDNNIIVNN 265
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
E+ + + L+ + + G HN N +AA+ L L +GV++E L ++ + HR+
Sbjct: 266 EIEEIAL---LKADELSLPGGHNLEN-CMAAIG-LTLALGVEIEVLVKVLKTFKAVEHRL 320
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319
+ V ++GV +V+DSK TN ++T + K +++ GG K + F +L E
Sbjct: 321 EYVDT-VKGVKYVNDSKGTNPDSTIKAVQSYK-DPIILIAGGYDK------GSDFNELFE 372
Query: 320 -PLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
++ R V+ G +G LI +T +G + + V ++K+AV + ++A D ++LSP
Sbjct: 373 IAKDYVRSVVILGQTGDLIEETARKHGFT-DLYRVNDLKEAVEKSAQIAKEKDIVLLSPA 431
Query: 379 CASFDEFRNFEHRGMVFQEL 398
CAS+ + N+E RG F++L
Sbjct: 432 CASWGMYNNYEERGREFKKL 451
>gi|344923347|ref|ZP_08776808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
Odyssella thessalonicensis L13]
Length = 448
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 123/391 (31%), Positives = 195/391 (49%), Gaps = 50/391 (12%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++M ++D Q P + KI+ VTGTNGKST T +G +L + + VGGN+G P+
Sbjct: 81 GIKIMGDVDLFRQNYP-TAKIIGVTGTNGKSTTTTLIGHILKNCNVPIAVGGNVGIPV-- 137
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVV--LNLTPDHLERHKTMKNY 142
++LP P V V+E+SSYQ+E+ C +++V N+TPDHLERHKTM++Y
Sbjct: 138 -----MSLP-KLPDNGVYVIELSSYQLELST---CLGLTIVAWTNITPDHLERHKTMRDY 188
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--- 199
K +F+ ++ + + + +R N A G F V + + F
Sbjct: 189 VYAKSQIFASPTVPPQSIICVDDSYSKDLY--NRMNAAHPGYFTPVSVVNPLRRGVFVYD 246
Query: 200 ---------EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
E +G ++QL+ + G HNY N A+A + +G++ + + + I+
Sbjct: 247 GMLIDALAEERINLGEITQLKY----LKGPHNYQNIAIA--YGVSRKLGLNSDEIMAAIQ 300
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI-LLGGQAKVLNGQ 309
HR + V GV +++DSKATN EA LK ++ + +LGG AK
Sbjct: 301 TFPGLAHRQEYVETR-NGVIFINDSKATNAEAASHA---LKAYENIYWILGGVAK----- 351
Query: 310 ESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHA-RRMAT 368
S+G ++L+ L + G + +TL IP ++ AV A A
Sbjct: 352 -SDGIDELLPLLERVKKAYLIGEASNRFAQTLAGK---IPYRLCLELEKAVREAYTDAAA 407
Query: 369 NGDAIV-LSPGCASFDEFRNFEHRGMVFQEL 398
G+ +V LSP CASFD+F++FE RG F+E+
Sbjct: 408 EGNGVVLLSPACASFDQFKDFECRGNAFKEI 438
>gi|406939065|gb|EKD72162.1| hypothetical protein ACD_45C00746G0002 [uncultured bacterium]
Length = 443
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 115/385 (29%), Positives = 192/385 (49%), Gaps = 42/385 (10%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G ++ +++ A+ ++ ++A+TGTN KSTV T VG+M G EA GGNLG P
Sbjct: 87 ERGAHIIGDIELFARAA--TMPVIAITGTNAKSTVTTLVGKMAEAAGFEAQTGGNLGVP- 143
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ L P + V+E+SS+Q+E + P V+ VLN+TPDH++R++T+K+Y
Sbjct: 144 ------ALDLLEKNPATNLFVLELSSFQLETTHS-LKPQVATVLNITPDHMDRYETLKHY 196
Query: 143 ALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP-GVKIDTEAKTA 197
K ++ H + N L +A++ F L G G+ +
Sbjct: 197 RQAKLRVYQHCSVAVCNRDDTLTDV------DALRKITFTLQTPGKNEFGLLVKNGKTYL 250
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+FE ++ L + + ++G+H Y A+A+L++ G G+ + + PH
Sbjct: 251 TFEDQSL-----LAIDELPIVGKH-YQANALASLAI-GYGFGLPFAPMIKVLREFTGLPH 303
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGGQAKVLNGQESNGF 314
R Q V R+ GV W +DSK TN+ AT + L K +++ GG K + F
Sbjct: 304 RCQFV-RERDGVRWYNDSKGTNVGATQAAIEGLGSEISGKLILIAGGVGK------NADF 356
Query: 315 EKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
++ + + R V+ G + + + + G I +M +AV + A GD++
Sbjct: 357 HPMVPIIEKYARHVVLIGEAAKELSEAI---GDRINISYAKSMDEAVVQSSNAAKPGDSV 413
Query: 374 VLSPGCASFDEFRNFEHRGMVFQEL 398
+LSP CASFD F+N+EHRG VF E+
Sbjct: 414 LLSPACASFDMFKNYEHRGQVFTEI 438
>gi|429462548|ref|YP_007184011.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451811697|ref|YP_007448152.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
Kinetoplastibacterium crithidii TCC036E]
gi|429338062|gb|AFZ82485.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451776855|gb|AGF47854.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
Kinetoplastibacterium crithidii TCC036E]
Length = 498
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 119/382 (31%), Positives = 192/382 (50%), Gaps = 48/382 (12%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCI---ALPSSKPKFQ 100
KI+A+TGTNGK+TV + ++L G+ GN+G P+ +A + LP +
Sbjct: 127 KIIAITGTNGKTTVTSLTYEILKKSGVLVCKAGNIGPPVLKALMDEVEQDVLP------E 180
Query: 101 VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF---------- 150
V V+E+SS+Q+ K CP VSVVLNL DH++ H T+ +Y TK +L
Sbjct: 181 VWVLEISSFQLYTI-KSLCPDVSVVLNLDFDHIDWHGTVDSYWETKVNLLRISKTSIINR 239
Query: 151 ------SHMVNTKLGLLPFGNQ-HLNEAIKG--HRFNLAWIGAFPGVKIDTEAKTASFEV 201
M+N+K+ FG+ +++ G R + W+ F K ++ K ++ +
Sbjct: 240 NDHVLMQKMLNSKIDSYSFGSDVPTHDSCFGLVTREDSKWLVVFIEKKSNSLCKISNDDF 299
Query: 202 PAVGVVSQ------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
+ + L+ + +K+ G HNY N +A+L ++ + + L + + L
Sbjct: 300 NYKEDLKKGFNCYLLKSNLLKIRGIHNYTNV-LASLQLISFIMPLTSSMLKTACDYL-GE 357
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
PHR+Q V +I GV++ DDSK TN+ AT T L K ++++GG K + F
Sbjct: 358 PHRIQFV-AEIGGVSYFDDSKGTNISATITALKSFD-KKTILIMGGVGK------NQDFS 409
Query: 316 KLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 374
+ + + + VI G I++ + ++PCF M+DAV A A+ GD ++
Sbjct: 410 YICSTIAEYAKIVILIGVDSSEIFEAI--KIANVPCFFSFTMEDAVLKASSYASRGDVVL 467
Query: 375 LSPGCASFDEFRNFEHRGMVFQ 396
LSP CASFD F N+ HRG VF
Sbjct: 468 LSPACASFDMFDNYSHRGNVFS 489
>gi|359796560|ref|ZP_09299157.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Achromobacter
arsenitoxydans SY8]
gi|359365523|gb|EHK67223.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Achromobacter
arsenitoxydans SY8]
Length = 510
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 137/402 (34%), Positives = 195/402 (48%), Gaps = 53/402 (13%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
R +++L + PR +LAVTGTNGK+TV Q++ G+ GN+ +P + AA
Sbjct: 118 RALADLAQTREYRPR---LLAVTGTNGKTTVTALTRQLIEASGMTVLAAGNI-SPAALAA 173
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ P QV V+E+SS+Q+E + +VVLN+T DHL+ H M+ YA K
Sbjct: 174 LMDALDTEALP--QVWVLELSSFQLETTHTLMA-DAAVVLNVTQDHLDWHGGMQPYAQAK 230
Query: 147 CHLFS----HMVNTK----LGLLPFGN--------QHLNEAIKGHRFNL----AWIGAFP 186
L +VN + ++P N + L E + L AW+ A
Sbjct: 231 ARLLKMARVAIVNRDDSYTVDMVPALNAMHVRSFGRDLPELVGDMGLELGQGVAWLTACE 290
Query: 187 GVKIDTEA------KTASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLGLDIG 239
D A K A V A G +S+L + +++ G HN NA A LD+G
Sbjct: 291 PSDFDEPAPPVRRKKDAPEPVRAKGRMSRLMPVDALRIRGIHNALNALAALQLARCLDLG 350
Query: 240 VDVEALNSTIEILRT---PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV 296
+ + LR PHR V R I GV +++DSK TN+ AT L L G V
Sbjct: 351 -----WGAMLRALREYAGEPHRAAFV-RTIGGVDYINDSKGTNVGATVAALEGL-GQPVV 403
Query: 297 ILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVAN 355
++ GGQ K GQ+ F LI ++ H R V+ G G I + L G++ C A+
Sbjct: 404 LIAGGQGK---GQD---FSPLIPVVSRHARAVMLIGADGPEIGRVLAPTGVN--CVTAAS 455
Query: 356 MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
++DAV A +A GDA++LSP CAS D FRN+ HRG VF E
Sbjct: 456 LRDAVRGAAELAQPGDAVLLSPACASLDMFRNYPHRGQVFVE 497
>gi|116052448|ref|YP_792760.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa UCBPP-PA14]
gi|421176555|ref|ZP_15634218.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa CI27]
gi|115587669|gb|ABJ13684.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
aeruginosa UCBPP-PA14]
gi|404530889|gb|EKA40872.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa CI27]
Length = 448
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 130/404 (32%), Positives = 196/404 (48%), Gaps = 49/404 (12%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
L+ L G R+ ++D A+ I+A+TG+N KSTV T VG+M
Sbjct: 79 LSLRTPALVQAAAKGVRISGDIDLFAR--EAKAPIVAITGSNAKSTVTTLVGEMAVAADK 136
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTP 130
VGGNLG P AL ++ V+E+SS+Q+E ++ V+ VLN++
Sbjct: 137 RVAVGGNLGTP---------ALDLLADDIELYVLELSSFQLETCDR-LNAEVATVLNVSE 186
Query: 131 DHLERHKTMKNYALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIKGHRFNL--AWIGA 184
DH++R+ M +Y L K +F +VN L + + + F+L A
Sbjct: 187 DHMDRYDGMADYHLAKHRIFRGARQVVVNRADALT---RPLIADTVPCWSFDLNKPDFKA 243
Query: 185 FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
F ++ D + K +F+ + L + +K+ G HNY NA A G +G+ +A
Sbjct: 244 FGLIEEDGQ-KWLAFQFDKL-----LPVGELKIRGAHNYSNALAALAL--GHAVGLPFDA 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL----MDLKGHKCVILLG 300
+ ++ HR Q V R+ QGV++ DDSKATN+ A + D+ G K V+L G
Sbjct: 296 MLGALKAFSGLAHRCQWV-RERQGVSYYDDSKATNVGAALAAIEGLGADIDG-KLVLLAG 353
Query: 301 GQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDA 359
G K + F L EP+ R V+ G LI + L N ++P VA + +A
Sbjct: 354 GDGKGAD------FHDLREPVARFCRAVVLLGRDAGLIAQALGN---AVPLVRVATLDEA 404
Query: 360 VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF----QELA 399
V A +A GDA++LSP CAS D F+NFE RG +F +ELA
Sbjct: 405 VRQAAELAREGDAVLLSPACASLDMFKNFEERGRLFAKAVEELA 448
>gi|107100001|ref|ZP_01363919.1| hypothetical protein PaerPA_01001022 [Pseudomonas aeruginosa PACS2]
Length = 448
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 130/404 (32%), Positives = 196/404 (48%), Gaps = 49/404 (12%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
L+ L G R+ ++D A+ I+A+TG+N KSTV T VG+M
Sbjct: 79 LSLRTPALVQAAAKGVRISGDIDLFAR--EAKAPIVAITGSNAKSTVTTLVGEMAVAADK 136
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTP 130
VGGNLG P AL ++ V+E+SS+Q+E ++ V+ VLN++
Sbjct: 137 RVAVGGNLGTP---------ALDLLADDIELYVLELSSFQLETCDR-LNAEVATVLNVSE 186
Query: 131 DHLERHKTMKNYALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIKGHRFNL--AWIGA 184
DH++R+ M +Y L K +F +VN L + +++ F L A
Sbjct: 187 DHMDRYDGMADYHLAKHRIFRGARQVVVNRADALT---RPLIADSVPCWSFGLNKPDFKA 243
Query: 185 FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
F ++ D + K +F+ + L + +K+ G HNY NA A G +G+ +A
Sbjct: 244 FGLIEEDGQ-KWLAFQFDKL-----LPVGELKIRGAHNYSNALAALAL--GHAVGLPFDA 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL----MDLKGHKCVILLG 300
+ ++ HR Q V R+ QGV++ DDSKATN+ A + D+ G K V+L G
Sbjct: 296 MLGALKAFSGLAHRCQWV-RERQGVSYYDDSKATNVGAALAAIEGLGADIDG-KLVLLAG 353
Query: 301 GQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDA 359
G K + F L EP+ R V+ G LI + L N ++P VA + +A
Sbjct: 354 GDGKGAD------FHDLREPVARFCRAVVLLGRDAGLIAQALGN---AVPLVRVATLDEA 404
Query: 360 VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF----QELA 399
V A +A GDA++LSP CAS D F+NFE RG +F +ELA
Sbjct: 405 VRQAAELAREGDAVLLSPACASLDMFKNFEERGRLFAKAVEELA 448
>gi|20808074|ref|NP_623245.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Thermoanaerobacter tengcongensis MB4]
gi|254479543|ref|ZP_05092860.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carboxydibrachium
pacificum DSM 12653]
gi|30316069|sp|Q8R9G4.1|MURD_THETN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|20516656|gb|AAM24849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thermoanaerobacter
tengcongensis MB4]
gi|214034511|gb|EEB75268.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carboxydibrachium
pacificum DSM 12653]
Length = 450
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 129/390 (33%), Positives = 202/390 (51%), Gaps = 55/390 (14%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++ E++ A ++ I A+TGTNGK+T + +G+M + G + +V GN+G PL
Sbjct: 92 GLEILGEVELAYRL--SKAPIYAITGTNGKTTTTSLLGEMFRNAGRKVYVAGNIGYPLIY 149
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
AA A P+ V E+SS+Q+E K F P +S ++N+TPDHL+RHKT +NYA
Sbjct: 150 AALE--AGPNDH-----IVAEISSFQLETV-KEFRPKISCIINITPDHLDRHKTFENYAN 201
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K +F + + +L + + + W G+K +AK F V
Sbjct: 202 IKGRIFENQREEEYVVLNYDDP------------VTW-----GLKERAKAKVFPFSRKKV 244
Query: 205 ----GVVSQ--LQLHNMKVM--------GRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
V + L L N KV+ G HN NA +AA SV L G++V+A+ +T+
Sbjct: 245 LENGAYVKEGFLYLQNKKVIKVEDIYIPGEHNLENA-LAASSVAYLS-GIEVDAIETTLR 302
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
+ HR++ V +I+G+ + +DSK TN +A+ + LK V++ GG K G E
Sbjct: 303 TFKGVEHRIEFVA-EIEGIKFYNDSKGTNPDASIKAIQALK-TPIVLIAGGYDK---GSE 357
Query: 311 SNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIP---CFAVANMKDAVNHARRMA 367
+ F K + R +I G + I KT + S P F V ++++AV A +A
Sbjct: 358 FDEFVKTFD--KKVRKLILIGQTAQKIKKTALK--YSYPEEDIFLVDSLEEAVRKAYEVA 413
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
GD+++LSP CAS+D F+NFE RG F++
Sbjct: 414 EKGDSVLLSPACASWDMFKNFEERGKAFKK 443
>gi|374312764|ref|YP_005059194.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Granulicella
mallensis MP5ACTX8]
gi|358754774|gb|AEU38164.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Granulicella
mallensis MP5ACTX8]
Length = 450
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 113/384 (29%), Positives = 183/384 (47%), Gaps = 33/384 (8%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++ EL+ AQ + +++ +TG+NGK+T T +G++ G VGGN+G P++E
Sbjct: 91 GMHIIGELELGAQFL--QGEVVGITGSNGKTTTTTLMGEIFKAAGRPTLVGGNIGKPVTE 148
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
+ S P+ +V+EVSS+Q+E F P +++VLN+TPDHL+RH +NYA
Sbjct: 149 L------VGESTPE-AWSVLEVSSFQLETVES-FRPRIAMVLNITPDHLDRHGNFENYAA 200
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS-FEVPA 203
K + +L ++ + + W VK + F P+
Sbjct: 201 AKARITEFQTAEDFLILNAEDKPTQMVAAKTKAQIYWFSPRRQVKQGAFVHGETIFFTPS 260
Query: 204 VGVVSQ--LQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
G + + + + + G HN N AAV A + GV E + + + + HR+
Sbjct: 261 EGAKPEPVMPVAEIPLAGAHNVENVLAAVCAARL----AGVASETIRAAVAAFKAVEHRL 316
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319
+ V R+ GV + +DSKATN++AT + G +IL G++ + ++
Sbjct: 317 EFV-REHNGVRYYNDSKATNVDATVKAVEAFAGRIYLIL--------GGKDKDSDYAVMG 367
Query: 320 PLNHHRC--VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
PL R VIT G + I L + M AV A A GD ++L+P
Sbjct: 368 PLLRERVKMVITIGSAAEKIEHQLAG---VVKIERAETMDRAVALAHEAAVAGDTVLLAP 424
Query: 378 GCASFDEFRNFEHRGMVFQELAFS 401
CASFD+F+N+EHRG F+ L +
Sbjct: 425 ACASFDQFQNYEHRGHAFKSLVLA 448
>gi|381153305|ref|ZP_09865174.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylomicrobium
album BG8]
gi|380885277|gb|EIC31154.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylomicrobium
album BG8]
Length = 456
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 121/388 (31%), Positives = 189/388 (48%), Gaps = 39/388 (10%)
Query: 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
L +A + +G ++S++D A I+A+TG+NGKSTV T +G+M G
Sbjct: 94 LTEPAIAQAIANGSVLVSDIDLFA--CSTHAPIVAITGSNGKSTVTTMLGEMAKTSGKLV 151
Query: 73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
VGGNLG AA + P+ + V+E+SS+Q+E V+ VLN++ DH
Sbjct: 152 GVGGNLGT----AALELLDTPA-----DLFVLELSSFQLE-RTTVLNAAVATVLNISADH 201
Query: 133 LERHKTMKNYALTKCHLFS----HMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV 188
L+RH+ ++ YA K +F ++N P N + + + +++ F
Sbjct: 202 LDRHRDVEEYAAVKQRIFDGNGVMVINADD---PRVNAMRRKGRRTYAYSIKEAADF--- 255
Query: 189 KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
AK E G + L + + GRHN NA A G +G++ EA+
Sbjct: 256 ---ALAKIKGVECLVYGGKKLMALSELPLEGRHNAANALAALAL--GTAVGLNPEAMCDA 310
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG 308
+ R PHRMQ V + I VTW++DSKATN+ A C + K ++L GG AK +
Sbjct: 311 LRRFRGLPHRMQKVAK-IDEVTWINDSKATNIGA-CVAALQGYERKVILLAGGDAKGADM 368
Query: 309 QESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA 367
+E L+ + + ++ G LI + L G +P NM++AV A A
Sbjct: 369 RE------LLPAVQEKVKSIVLMGKDADLIEQAL---GGCVPVLRAENMREAVRLAAGQA 419
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVF 395
GD ++LSP CAS D+++N++ RG VF
Sbjct: 420 QRGDTVLLSPACASLDQYKNYQERGEVF 447
>gi|355650326|ref|ZP_09056026.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas sp.
2_1_26]
gi|354826875|gb|EHF11078.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas sp.
2_1_26]
Length = 448
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 130/404 (32%), Positives = 196/404 (48%), Gaps = 49/404 (12%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
L+ L G R+ ++D A+ I+A+TG+N KSTV T VG+M
Sbjct: 79 LSLRTPALVQAAAKGVRISGDIDLFAR--EAKAPIVAITGSNAKSTVTTLVGEMAVAADK 136
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTP 130
VGGNLG P AL ++ V+E+SS+Q+E ++ V+ VLN++
Sbjct: 137 RVAVGGNLGTP---------ALDLLADDIELYVLELSSFQLETCDR-LNAEVATVLNVSE 186
Query: 131 DHLERHKTMKNYALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIKGHRFNL--AWIGA 184
DH++R+ M +Y L K +F +VN L + +++ F L A
Sbjct: 187 DHMDRYDGMADYHLAKHRIFRGARQVVVNRADALT---RPLIADSVPCWSFGLNKPDFKA 243
Query: 185 FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
F ++ D + K +F+ + L + +K+ G HNY NA A G +G+ +A
Sbjct: 244 FGLIEEDGQ-KWLAFQFDKL-----LPVGELKIRGAHNYSNALAALAL--GHAVGLPFDA 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL----MDLKGHKCVILLG 300
+ ++ HR Q V R+ QGV++ DDSKATN+ A + D+ G K V+L G
Sbjct: 296 MLGALKAFSGLAHRCQWV-RERQGVSYYDDSKATNVGAALAAIEGLGADIDG-KLVLLAG 353
Query: 301 GQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDA 359
G K + F L EP+ R V+ G LI + L N ++P VA + +A
Sbjct: 354 GDGKGAD------FHDLREPVARFCRAVVLLGRDAGLIAQALGN---AVPLVRVATLDEA 404
Query: 360 VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF----QELA 399
V A +A GDA++LSP CAS D F+NFE RG +F +ELA
Sbjct: 405 VRQAAELAREGDAVLLSPACASLDMFKNFEERGRLFAKAVEELA 448
>gi|424944821|ref|ZP_18360584.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
aeruginosa NCMG1179]
gi|346061267|dbj|GAA21150.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
aeruginosa NCMG1179]
Length = 448
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 130/404 (32%), Positives = 195/404 (48%), Gaps = 49/404 (12%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
L+ L G R+ ++D A+ I+A+TG+N KSTV T VG+M
Sbjct: 79 LSLRTPALVQAAAKGVRISGDIDLFAR--EAKAPIVAITGSNAKSTVTTLVGEMAVAADK 136
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTP 130
VGGNLG P AL ++ V+E+SS+Q+E ++ V+ VLN++
Sbjct: 137 RVAVGGNLGTP---------ALDLLADDIELYVLELSSFQLETCDR-LNAEVATVLNVSE 186
Query: 131 DHLERHKTMKNYALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIKGHRFNL--AWIGA 184
DH++R+ M +Y L K +F +VN L + + + F L A
Sbjct: 187 DHMDRYDGMADYHLAKHRIFRGARQVVVNRADALT---RPLIADTVPCWSFGLNKPDFKA 243
Query: 185 FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
F ++ D + K +F+ + L + +K+ G HNY NA A G +G+ +A
Sbjct: 244 FGLIEEDGQ-KWLAFQFDKL-----LPVGELKIRGAHNYSNALAALAL--GHAVGLPFDA 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL----MDLKGHKCVILLG 300
+ ++ HR Q V R+ QGV++ DDSKATN+ A + D+ G K V+L G
Sbjct: 296 MLGALKAFSGLAHRCQWV-RERQGVSYYDDSKATNVGAALAAIEGLGADIDG-KLVLLAG 353
Query: 301 GQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDA 359
G K + F L EP+ R V+ G LI + L N ++P VA + +A
Sbjct: 354 GDGKGAD------FHDLREPVARFCRAVVLLGRDAELIAQALGN---AVPLVRVATLDEA 404
Query: 360 VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF----QELA 399
V A +A GDA++LSP CAS D F+NFE RG +F +ELA
Sbjct: 405 VRQAAELAREGDAVLLSPACASLDMFKNFEERGRLFAKAVEELA 448
>gi|225850179|ref|YP_002730413.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Persephonella
marina EX-H1]
gi|225646272|gb|ACO04458.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Persephonella
marina EX-H1]
Length = 419
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/372 (30%), Positives = 186/372 (50%), Gaps = 27/372 (7%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+ E++F+ + S+ +AVTGT+GKST + ++ +A +GGN G P S+
Sbjct: 67 VVGEIEFSYRFFDGSV--IAVTGTDGKSTTSKLIHHIIGEE--KADIGGNYGTPFSDIV- 121
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
S+ K V+E+SS+Q+ + F P ++V LN PDHL+ HK + +Y L+K
Sbjct: 122 -------SEGK-DTVVLELSSFQI-YSTEMFRPDIAVFLNFYPDHLDWHKKLLHYRLSKY 172
Query: 148 HLFSHMVNTKLGLLPFGNQHL-NEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
LF +M +L F +Q + N KG R+ + + P + + G
Sbjct: 173 RLFRNMKEEDPAVLNFDDQVVRNTPKKGKRYYFS-LSPLPDNLEGAYYDGSEIVLKINGF 231
Query: 207 VSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI 266
+ L ++ + G HN N + A V G+D E + ++ + PHRM+ V I
Sbjct: 232 KFKFGLSDIHLKGIHNIQN--IMASVVTAYIYGIDPETIEERLKSFKPLPHRMEYVGS-I 288
Query: 267 QGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRC 326
GV + +DSKAT ++A + G + +++ GG K G S+ ++L LN +
Sbjct: 289 NGVDFYNDSKATTVQAVKKAVQSFDGKRVILITGGINK--GGDFSDLRDEL---LNSVKE 343
Query: 327 VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR 386
V G I+ + + + +++DAVN A + A GD I+LSPGCASFD F+
Sbjct: 344 VFIIGRDRKSIYSMIKD---YVKAEIKESLEDAVNTAFKKAEKGDVILLSPGCASFDMFK 400
Query: 387 NFEHRGMVFQEL 398
N++ RG +F+ +
Sbjct: 401 NYQERGEIFKSI 412
>gi|15599610|ref|NP_253104.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa PAO1]
gi|152985250|ref|YP_001350322.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa PA7]
gi|254238923|ref|ZP_04932246.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
aeruginosa C3719]
gi|254244775|ref|ZP_04938097.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
aeruginosa 2192]
gi|296391123|ref|ZP_06880598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa PAb1]
gi|386060566|ref|YP_005977088.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa M18]
gi|392985978|ref|YP_006484565.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa DK2]
gi|416859398|ref|ZP_11913829.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa 138244]
gi|416876467|ref|ZP_11919272.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa 152504]
gi|418583947|ref|ZP_13148013.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa MPAO1/P1]
gi|418589679|ref|ZP_13153600.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa MPAO1/P2]
gi|419751959|ref|ZP_14278368.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa PADK2_CF510]
gi|420141555|ref|ZP_14649230.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa CIG1]
gi|421155778|ref|ZP_15615244.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa ATCC 14886]
gi|421162759|ref|ZP_15621566.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa ATCC 25324]
gi|421182472|ref|ZP_15639948.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa E2]
gi|421518967|ref|ZP_15965640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa PAO579]
gi|451986254|ref|ZP_21934443.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
aeruginosa 18A]
gi|30316126|sp|Q9HVZ9.1|MURD_PSEAE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|9950646|gb|AAG07802.1|AE004856_13 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
aeruginosa PAO1]
gi|126170854|gb|EAZ56365.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
aeruginosa C3719]
gi|126198153|gb|EAZ62216.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
aeruginosa 2192]
gi|150960408|gb|ABR82433.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
aeruginosa PA7]
gi|334838467|gb|EGM17186.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa 138244]
gi|334840745|gb|EGM19391.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa 152504]
gi|347306872|gb|AEO76986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa M18]
gi|375046426|gb|EHS38987.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa MPAO1/P1]
gi|375051535|gb|EHS44002.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa MPAO1/P2]
gi|384401536|gb|EIE47890.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa PADK2_CF510]
gi|392321483|gb|AFM66863.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa DK2]
gi|403245697|gb|EJY59478.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa CIG1]
gi|404346372|gb|EJZ72722.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa PAO579]
gi|404519955|gb|EKA30664.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa ATCC 14886]
gi|404533365|gb|EKA43195.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa ATCC 25324]
gi|404542059|gb|EKA51398.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa E2]
gi|451756150|emb|CCQ86966.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
aeruginosa 18A]
gi|453046248|gb|EME93965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa PA21_ST175]
Length = 448
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 130/404 (32%), Positives = 195/404 (48%), Gaps = 49/404 (12%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
L+ L G R+ ++D A+ I+A+TG+N KSTV T VG+M
Sbjct: 79 LSLRTPALVQAAAKGVRISGDIDLFAR--EAKAPIVAITGSNAKSTVTTLVGEMAVAADK 136
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTP 130
VGGNLG P AL ++ V+E+SS+Q+E ++ V+ VLN++
Sbjct: 137 RVAVGGNLGTP---------ALDLLADDIELYVLELSSFQLETCDR-LNAEVATVLNVSE 186
Query: 131 DHLERHKTMKNYALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIKGHRFNL--AWIGA 184
DH++R+ M +Y L K +F +VN L + + + F L A
Sbjct: 187 DHMDRYDGMADYHLAKHRIFRGARQVVVNRADALT---RPLIADTVPCWSFGLNKPDFKA 243
Query: 185 FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
F ++ D + K +F+ + L + +K+ G HNY NA A G +G+ +A
Sbjct: 244 FGLIEEDGQ-KWLAFQFDKL-----LPVGELKIRGAHNYSNALAALAL--GHAVGLPFDA 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL----MDLKGHKCVILLG 300
+ ++ HR Q V R+ QGV++ DDSKATN+ A + D+ G K V+L G
Sbjct: 296 MLGALKAFSGLAHRCQWV-RERQGVSYYDDSKATNVGAALAAIEGLGADIDG-KLVLLAG 353
Query: 301 GQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDA 359
G K + F L EP+ R V+ G LI + L N ++P VA + +A
Sbjct: 354 GDGKGAD------FHDLREPVARFCRAVVLLGRDAGLIAQALGN---AVPLVRVATLDEA 404
Query: 360 VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF----QELA 399
V A +A GDA++LSP CAS D F+NFE RG +F +ELA
Sbjct: 405 VRQAAELAREGDAVLLSPACASLDMFKNFEERGRLFAKAVEELA 448
>gi|12007718|gb|AAG45237.1| MurD [Pseudomonas aeruginosa]
Length = 448
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 130/404 (32%), Positives = 195/404 (48%), Gaps = 49/404 (12%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
L+ L G R+ ++D A+ I+A+TG+N KSTV T VG+M
Sbjct: 79 LSLRTPALVQAAAKGVRISGDIDLFAR--EAKAPIVAITGSNAKSTVTTLVGEMAVAADK 136
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTP 130
VGGNLG P AL ++ V+E+SS+Q+E ++ V+ VLN++
Sbjct: 137 RVAVGGNLGTP---------ALDLLADDIELYVLELSSFQLETCDR-LNAEVATVLNVSE 186
Query: 131 DHLERHKTMKNYALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIKGHRFNL--AWIGA 184
DH++R+ M +Y L K +F +VN L + + + F L A
Sbjct: 187 DHMDRYDGMADYHLAKHRIFRGARQVVVNRADALT---RPLIADTVPCWSFGLNKPDFKA 243
Query: 185 FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
F ++ D + K +F+ + L + +K+ G HNY NA A G +G+ +A
Sbjct: 244 FGLIEEDGQ-KWLAFQFGKL-----LPVGELKIRGAHNYSNALAALAL--GHAVGLPFDA 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL----MDLKGHKCVILLG 300
+ ++ HR Q V R+ QGV++ DDSKATN+ A + D+ G K V+L G
Sbjct: 296 MLGALKAFSGLAHRCQWV-RERQGVSYYDDSKATNVGAALAAIEGLGADIDG-KLVLLAG 353
Query: 301 GQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDA 359
G K + F L EP+ R V+ G LI + L N ++P VA + +A
Sbjct: 354 GDGKGAD------FHDLREPVARFCRAVVLLGRDAGLIAQALGN---AVPLVRVATLDEA 404
Query: 360 VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF----QELA 399
V A +A GDA++LSP CAS D F+NFE RG +F +ELA
Sbjct: 405 VRQAAELAREGDAVLLSPACASLDMFKNFEERGRLFAKAVEELA 448
>gi|225872736|ref|YP_002754193.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acidobacterium
capsulatum ATCC 51196]
gi|254766033|sp|C1F460.1|MURD_ACIC5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|225794452|gb|ACO34542.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acidobacterium
capsulatum ATCC 51196]
Length = 461
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 120/391 (30%), Positives = 189/391 (48%), Gaps = 47/391 (12%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++ E++ AA+ + K LA+TG+NGK+T + G +L VGGN+G P+
Sbjct: 92 GLPIIGEVELAARFLKG--KTLAITGSNGKTTTTSLCGAILERAHQHVQVGGNIGLPV-- 147
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
IAL +V+E+SS+Q+E + F P ++V+LN+TPDHL+RH + +NY
Sbjct: 148 -----IALVDDSRDDGWSVLEISSFQLETTER-FRPGIAVILNITPDHLDRHGSFENYVA 201
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--------GAF--PGVKIDTEA 194
K +F+ + +L + + A + W GAF G + A
Sbjct: 202 AKERIFAAQTHDDALILNADDDAASRAAARASSRIFWFSRNRVIRQGAFVHEGNILFRAA 261
Query: 195 KTASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEIL 252
+ A+ E L L + + G HN N AAV A + GV EA+ +
Sbjct: 262 EDAATE-------PILPLSEIPLKGAHNVENVLAAVCAARL----AGVSAEAIRDAVRDF 310
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
R HR++ V +I GV++ +DSKATN++A + G G +L G++ N
Sbjct: 311 RAVEHRLEFVA-EIGGVSFYNDSKATNVDAARKAIEAFPG--------GIHLILGGKDKN 361
Query: 313 GFEKLIEPLNHHR--CVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 370
+ + PL R V T G + I L ++P A + AVN A A+ G
Sbjct: 362 SDYRTLRPLMAGRVKAVYTIGSAAEKIMTHLDG---AVPLIAAGTLDLAVNLAGGAASPG 418
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVFQELAFS 401
D ++L+P C+SFD+F N+E RG VF++L +
Sbjct: 419 DVVLLAPACSSFDQFENYEQRGQVFKDLVLA 449
>gi|423093677|ref|ZP_17081473.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
fluorescens Q2-87]
gi|397889042|gb|EJL05525.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
fluorescens Q2-87]
Length = 448
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 121/368 (32%), Positives = 182/368 (49%), Gaps = 47/368 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IIAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y HL H + + F
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAY-----HLAKHRIFRGARQVVFN 215
Query: 165 NQH------LNEAIKGHRFNLAWIGAFPGVKIDTE--AKTASFEVPAVGVVSQLQLHNMK 216
Q + E + F L + F G + E K +FE + + + +K
Sbjct: 216 RQDALTRPLIGEGLPYWTFGLG-VPDFKGFGLREENGEKYLAFEFQNL-----MPVRELK 269
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
V G HN A A LG +G+ EA+ S + HR Q V RD+ GV W +DSK
Sbjct: 270 VRGAHN--QANALAALALGHAVGLPFEAMLSALRNFAGLEHRCQWV-RDLDGVAWYNDSK 326
Query: 277 ATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFG 331
ATN+ A + D++G K V++ GG K + F+ L +P+ + R V+ G
Sbjct: 327 ATNVGAALAAIEGLGADIEG-KLVLIAGGDGKGAD------FKDLRDPVAANCRAVVLMG 379
Query: 332 YSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 391
LI + L G ++P VA++ +AV R +A GDA++LSP CASFD F+N+E R
Sbjct: 380 RDRELIAQAL---GDAVPLIRVASLDEAVQQCRALAQPGDAVLLSPACASFDMFKNYEER 436
Query: 392 GMVFQELA 399
G +F A
Sbjct: 437 GQLFARAA 444
>gi|337755807|ref|YP_004648318.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella sp.
TX077308]
gi|336447412|gb|AEI36718.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella sp.
TX077308]
Length = 414
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 189/377 (50%), Gaps = 50/377 (13%)
Query: 26 KRVMSELDFAAQVIPRS-IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
++++S++D Q I + K++AVTG+NGKST+VT + +L LG ++ + GN+G P
Sbjct: 79 QKIVSDIDLFYQSIRNTKAKMIAVTGSNGKSTIVTMLDFVLRDLGYKSILVGNIGTP--- 135
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
L +F VVEVSS+Q+++ N + V+N++PDHL+R+ + Y
Sbjct: 136 ------PLNKIGERFDYCVVEVSSFQIDLFNSVEFD-LGCVINVSPDHLDRYNNYEEYK- 187
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+KL L F N + H L + G + V+ S A
Sbjct: 188 ----------QSKLNLAKFSNDFFVYDV--HNNGLKYAGEYQIVR-------GSIYKNAT 228
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+ L ++ + G HN N V L++ G+D + ++++ + HR ++V +
Sbjct: 229 KL---LDINETNLFGEHNLENIIVV-LNIFDR-FGIDAFKVVNSVKKFKGLKHRCEVVKK 283
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL-GGQAKVLNGQESNGFEKLIEPLNH 323
G+T+++DSK TN+ AT L + K +ILL GG AK G + N +K ++
Sbjct: 284 -TNGITYINDSKGTNVGATIAALNSITNSKNIILLLGGVAK---GGDFNLMKKSLDKYVK 339
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPC-FAVAN-MKDAVNHARRMATNGDAIVLSPGCAS 381
+ CV +G K + N + C + + N MKDA + A + A NGD I+LSP CAS
Sbjct: 340 YICV--YGQD-----KEYIENYIKDLCQYQICNDMKDAFDSANQKARNGDTILLSPACAS 392
Query: 382 FDEFRNFEHRGMVFQEL 398
FDEF + RG VF+ L
Sbjct: 393 FDEFSGYAERGDVFERL 409
>gi|423015706|ref|ZP_17006427.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Achromobacter
xylosoxidans AXX-A]
gi|338781209|gb|EGP45602.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Achromobacter
xylosoxidans AXX-A]
Length = 510
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 135/401 (33%), Positives = 190/401 (47%), Gaps = 51/401 (12%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
R ++EL + PR +LAVTGTNGK+TV ++ G+ GN+ +P + A
Sbjct: 118 RALAELAETREYRPR---VLAVTGTNGKTTVTALTRDLVQASGLSVLAAGNI-SPAALTA 173
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
P QV V+E+SS+Q+E + +VVLN+T DHL+ H M YA K
Sbjct: 174 LMGALDADDLP--QVWVLELSSFQLETTHTLMA-DAAVVLNVTQDHLDWHGGMDAYAHAK 230
Query: 147 CHLFS----HMVNTK----------LGLLP---FGNQHLNEAIKGHRF-----NLAWIGA 184
L +VN L +P FG A+ G +AW+ A
Sbjct: 231 ARLLKMARIAIVNRDDPYTVDMVPSLDAMPVRSFGRDV--PALVGDMGLELGQGVAWLVA 288
Query: 185 FPGVKIDT------EAKTASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLGLD 237
V D K A V A G +S+L + +++ G HN NA A LD
Sbjct: 289 AEPVDFDEPVAPVRRKKDAPEPVRAKGRMSRLMPVDALRIRGIHNALNALAALQLARCLD 348
Query: 238 IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI 297
+G A+ T+ PHR V R+I GV +++DSK TN+ AT L + G V+
Sbjct: 349 LGWG--AMLRTLREYAGEPHRAAFV-RNIGGVDYINDSKGTNVGATVAALEGM-GQPVVL 404
Query: 298 LLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANM 356
+ GGQ K GQ+ F L+ ++ H R V+ G G I + L G + C AV ++
Sbjct: 405 IAGGQGK---GQD---FSPLVPVVSRHARAVLLIGQDGPEIGRVLAATG--VDCIAVESL 456
Query: 357 KDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
+DAV A +A GD ++LSP CAS D FRN+ HRG VF E
Sbjct: 457 RDAVRRAAELAQAGDVVLLSPACASLDMFRNYPHRGQVFVE 497
>gi|383785028|ref|YP_005469598.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Leptospirillum
ferrooxidans C2-3]
gi|383083941|dbj|BAM07468.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase
[Leptospirillum ferrooxidans C2-3]
Length = 535
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 139/446 (31%), Positives = 204/446 (45%), Gaps = 77/446 (17%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
K +GLA + + RV+ EL++A+ + P +LAV GTNGKST L G+ F
Sbjct: 102 KWSGLA-VPEYDSRVIGELEWASALSP--FPLLAVGGTNGKSTTSALAAHFLRACGLSVF 158
Query: 74 VGGNLGNPLSEAAF---HCIALPSSKPKFQVAVVEVSSYQMEIPN---KYFCPTVSVVLN 127
+GGN G PLSEA IA S P++ VVE+SS+Q E + +F P V + LN
Sbjct: 159 LGGNFGTPLSEAVLSERKRIAQELS-PEYDAGVVEISSFQAETMSPVRSWFDPVVHLFLN 217
Query: 128 LTPDHLERHKTMKNYALTKCHLF-----SHMV----NTKLGLLPFGNQHLNEAI-----K 173
+TPDHL+RH + + Y K F SH + + GL P A K
Sbjct: 218 ITPDHLDRHPSEEAYRRAKWQSFRGISPSHFTVFNGDPESGLYPLRKTPGRPAFFFASRK 277
Query: 174 GHRFNL----------------AWIGAFPGVKIDTEA-KTASFEVPAVGVVSQLQLHNMK 216
G L + FPG K +TE + F +P +G L
Sbjct: 278 GASPELPVEEAPVFLLSEDGKTGRVSGFPGQKGETEIWQLDGFSLPGLGNRQNLA---AS 334
Query: 217 VMGRHNYHNAAVAALSVLGLDIG----VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
++G + N V G D G + L ++ R PHRM+++ + G+ ++
Sbjct: 335 LLGTLIFLNEQRKIGKVRGQDSGDMPFPEKTLLLESLSGFRGLPHRMEVIA-EKNGICFI 393
Query: 273 DDSKATNLEATCTGLMDLKG---------------HKCVILLGGQAKVLNGQESNGFEKL 317
+DSKATN++AT LM LKG ++++GG+ K + L
Sbjct: 394 NDSKATNVDAT---LMALKGFSVKSGNKGGDDADARSLILIMGGRDK------GASYFPL 444
Query: 318 IEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLS 376
P+ R +I G S +I K+L + +IP V++MK AV+ A GD ++LS
Sbjct: 445 ASPVKDLVRVLIVLGESREVIAKSLSSFCETIP---VSSMKMAVDVALSKGREGDTVLLS 501
Query: 377 PGCASFDEFRNFEHRGMVFQELAFSA 402
PGC+S+D F +E RG F L A
Sbjct: 502 PGCSSYDMFHGYEERGNAFAMLVREA 527
>gi|422322611|ref|ZP_16403651.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Achromobacter
xylosoxidans C54]
gi|317402449|gb|EFV83018.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Achromobacter
xylosoxidans C54]
Length = 510
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 135/403 (33%), Positives = 189/403 (46%), Gaps = 55/403 (13%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
R ++EL + PR +LAVTGTNGK+TV ++ G+ GN+ +P + A
Sbjct: 118 RALAELAETREYRPR---VLAVTGTNGKTTVTALTRDLVAASGLSVLAAGNI-SPAALTA 173
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
P QV V+E+SS+Q+E + +VVLN+T DHL+ H M YA TK
Sbjct: 174 LMQALDADDLP--QVWVLELSSFQLETTHTLMA-DAAVVLNVTQDHLDWHGGMDAYARTK 230
Query: 147 CHLFS----HMVNTK----------LGLLP---FGNQHLNEAIKGHRFNL----AWIGAF 185
L +VN L +P FG + + E + L AW+ A
Sbjct: 231 ARLLKMTRIAIVNRDDPYTVDMVPSLAAMPVRSFGRE-VPELVGDMGLELGQGVAWLVAA 289
Query: 186 PGVKIDT------EAKTASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLGLDI 238
+ D K A A G +S+L + +++ G HN NA A LD+
Sbjct: 290 EPLDFDEPVAPVRRKKDAPEPTRAKGRMSRLMPVDALRIRGIHNALNALAALQLARCLDL 349
Query: 239 GVDVEALNSTIEILRT---PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKC 295
G + LR PHR V R I GV +++DSK TN+ AT L + G
Sbjct: 350 G-----WGPMLRALREYAGEPHRAAFV-RSIGGVDYINDSKGTNVGATVAALEGM-GQPV 402
Query: 296 VILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVA 354
V++ GGQ K GQ+ F LI ++ H R V+ G G I + L G + C AV
Sbjct: 403 VLIAGGQGK---GQD---FSPLIPVVSRHARAVLLIGQDGPEIGRVLAATG--VDCIAVE 454
Query: 355 NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
+++DAV A +A GD ++LSP CAS D FRN+ HRG VF E
Sbjct: 455 SLRDAVRRAAELAQAGDVVLLSPACASLDMFRNYPHRGQVFVE 497
>gi|429331489|ref|ZP_19212243.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
putida CSV86]
gi|428763821|gb|EKX85982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
putida CSV86]
Length = 448
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 122/367 (33%), Positives = 182/367 (49%), Gaps = 45/367 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLGDDVELYVL 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 ---LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKV 217
LP Q N AF G++ + K +FE + + + +K+
Sbjct: 221 SRPLPVEGQ----PCWTFGLNTPDFKAF-GLREENGEKYLAFEFRNL-----MPVRELKI 270
Query: 218 MGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
G HN NA A LG +G+ EA+ ++ HR Q V R++ GV + DDSKA
Sbjct: 271 RGAHNQSNALAA--LALGHAVGLPFEAMLESLRSFAGLAHRCQWV-RELNGVNYYDDSKA 327
Query: 278 TNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGY 332
TN+ A + D+ G K V++ GG K + F L P+ H R V+ G
Sbjct: 328 TNVGAALAAIEGLGADIDG-KLVLIAGGDGKGAD------FSALRAPVGEHCRAVVLLGR 380
Query: 333 SGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 392
L+ + L G S+P V ++DAV A +A +GDA++LSP CAS D F+NFE RG
Sbjct: 381 DAELLAEAL---GDSVPLVRVKTLEDAVQKAAELARSGDAVLLSPACASLDMFKNFEERG 437
Query: 393 MVFQELA 399
+F + A
Sbjct: 438 RLFAQAA 444
>gi|153006720|ref|YP_001381045.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter
sp. Fw109-5]
gi|152030293|gb|ABS28061.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter
sp. Fw109-5]
Length = 461
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 120/385 (31%), Positives = 181/385 (47%), Gaps = 33/385 (8%)
Query: 24 SGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
+G V E++ AA+ + + I+A+TGTNGKST G + F GGNLG PL
Sbjct: 93 AGVPVWGEVELAARFLA-GVPIVAITGTNGKSTTTALAGALFARH-RRTFTGGNLGTPLC 150
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
+ H + +V V E+SS+QME P V+ +LN+TPDHL+R++ + +YA
Sbjct: 151 Q---HVL----DGGGAEVVVAELSSFQMEG-LLSLRPRVAAILNVTPDHLDRYRDVDDYA 202
Query: 144 LTKCHLF------SHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF---PGVKIDTEA 194
K LF H V + A+ H F G PG++ D
Sbjct: 203 AAKARLFGLQQPGDHAVANARDPRALAMAEASRAVL-HTFGFGPPGPGARDPGLEPDEGG 261
Query: 195 KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
T + G + +L N + GRHN NA A L L GV + + ++
Sbjct: 262 ATELWVQARGGGPERFRLANRALRGRHNRENAMAAVLCARLL--GVPGGEVQAGLDAFGG 319
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGF 314
PHR+++V + G+ WV+DSKATN+++T GL ++L V+ G+
Sbjct: 320 LPHRLEVVG-ERGGIEWVNDSKATNVDSTLVGLSAFPAGTARVVL-----VMGGRGKGAP 373
Query: 315 EKLIEPLNHHR--CVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 372
+ PL R ++T G + + L G P A ++ AV A + GDA
Sbjct: 374 YAPLRPLFAGRVKALLTIGEDAPAVEREL---GDLCPTEACVTLEAAVRRAAALVRPGDA 430
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQE 397
++LSP CAS+D+FRN+E RG F+
Sbjct: 431 VLLSPACASYDQFRNYEERGEAFRR 455
>gi|218893505|ref|YP_002442374.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa LESB58]
gi|218773733|emb|CAW29547.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
aeruginosa LESB58]
Length = 448
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 130/404 (32%), Positives = 195/404 (48%), Gaps = 49/404 (12%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
L+ L G R+ ++D A+ I+A+TG+N KSTV T VG+M
Sbjct: 79 LSLRTPALVQAAAKGVRISGDIDLFAR--EAKAPIVAITGSNAKSTVTTLVGEMAVAADK 136
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTP 130
VGGNLG P AL ++ V+E+SS+Q+E ++ V+ VLN++
Sbjct: 137 RVAVGGNLGTP---------ALDLLADDIELYVLELSSFQLETCDR-LNAEVATVLNVSE 186
Query: 131 DHLERHKTMKNYALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIKGHRFNL--AWIGA 184
DH++R+ M +Y L K +F +VN L + + + F L A
Sbjct: 187 DHMDRYDGMADYHLAKHRIFRGARQVVVNRADALT---RPLIADTVPCWSFGLNKPDFKA 243
Query: 185 FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
F ++ D + K +F+ + L + +K+ G HNY NA A G +G+ +A
Sbjct: 244 FGLIEEDGQ-KWLAFQFDKL-----LPVGELKIRGAHNYSNALAALAL--GHAVGLPFDA 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL----MDLKGHKCVILLG 300
+ ++ HR Q V R+ QGV++ DDSKATN+ A + D+ G K V+L G
Sbjct: 296 MLGALKAFPGLAHRCQWV-RERQGVSYYDDSKATNVGAALAAIEGLGADIDG-KLVLLAG 353
Query: 301 GQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDA 359
G K + F L EP+ R V+ G LI + L N ++P VA + +A
Sbjct: 354 GDGKGAD------FHDLREPVARFCRAVVLLGRDAGLIAQALGN---AVPLVRVATLDEA 404
Query: 360 VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF----QELA 399
V A +A GDA++LSP CAS D F+NFE RG +F +ELA
Sbjct: 405 VRQAAELAREGDAVLLSPACASLDMFKNFEERGRLFAKAVEELA 448
>gi|365174756|ref|ZP_09362195.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Synergistes sp.
3_1_syn1]
gi|363614168|gb|EHL65666.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Synergistes sp.
3_1_syn1]
Length = 460
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 128/395 (32%), Positives = 195/395 (49%), Gaps = 48/395 (12%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA L G V ELDF + + S ++ VTG+NGK+T + +G L LG
Sbjct: 83 KAPILEAAAAKGITVTGELDFVSPYL--SGIVIGVTGSNGKTTTTSMIGYYLERLGYSVM 140
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHL 133
GGN+GN ++ AA ++ V+E+SS+Q+ K+ C ++VV NL PDH+
Sbjct: 141 TGGNIGNAVARAA---------GKEYDFIVLELSSFQLCWAKKFIC-DLAVVTNLAPDHI 190
Query: 134 ERHKTMKNYALTKCHLFSHMVNTKLGLLPFG--------NQHLNEAIKGH--RFNLAWIG 183
+ H + +NY K +L VN L P G + LN A + R+ L W
Sbjct: 191 DWHGSYENYVAAKANL----VNC---LAPGGAVIYQERDEEALNIAAREEIVRYPLRWGE 243
Query: 184 AFP---GVKIDTEAKTASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIG 239
P G+ +D + + + +L ++K++GRHN N A+ AL VL L
Sbjct: 244 DDPHKRGLYLDDGVRASWINGGGCRMKRRLFFFDDVKLLGRHNLENTAM-ALGVLAL--- 299
Query: 240 VDVEALNSTIEILRTPP-HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL 298
++ L+ + PP HR + +GVT+VDDSK TN+ AT T + L G K VI+
Sbjct: 300 FNMPELSPELIASYVPPKHRCAFAGK-TRGVTFVDDSKGTNVAATVTAMTSLPGAK-VII 357
Query: 299 LGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMK 357
LGGQ K G++ + L E + + R + G I L G+S C V +M+
Sbjct: 358 LGGQGK---GED---YAPLAEAVRENTRAAVLLGSEKEKIAAALSAAGVS-GCRLVNDME 410
Query: 358 DAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 392
+AV A +A+ GD ++LSP C S+D + ++ RG
Sbjct: 411 EAVKTAYSLASEGDTVLLSPACTSWDMYPSYNVRG 445
>gi|163855000|ref|YP_001629298.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
petrii DSM 12804]
gi|163258728|emb|CAP41027.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bordetella petrii]
Length = 509
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 133/402 (33%), Positives = 187/402 (46%), Gaps = 53/402 (13%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
R ++EL + PR +L VTGTNGK+TV Q++ G+ GN+G P + AA
Sbjct: 118 RALAELAESRDYRPR---LLTVTGTNGKTTVTALTRQLVEAGGMTVRAAGNIG-PAALAA 173
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
P QV V+E+SS+Q+E + +VVLN+T DHL+ H M YA K
Sbjct: 174 LIDALDADDLP--QVWVLELSSFQLET-TRSLMADAAVVLNVTQDHLDWHGGMDAYAQAK 230
Query: 147 CHLFS----HMVNTK-------------LGLLPFGNQHLNEAIKGHRFNL----AWIGAF 185
L +VN + + FG + L E + L AW+ A
Sbjct: 231 ARLLKMARVSIVNRDDPRVAGMVEALPAMDVRSFG-RDLPELVGDMGLELGQGMAWLVAC 289
Query: 186 PGVKIDTEAKTASFEVPA------VGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDI 238
D A A + A G +S+L L +++ G+HN NA A L+I
Sbjct: 290 EPNDFDEPAPPARRKKDAPPPRRGAGRISRLMPLDALRIRGQHNGLNALAALQLARVLNI 349
Query: 239 GVDVEALNSTIEILRT---PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKC 295
G + LR PHR + V R I V +++DSK TN+ AT L L G
Sbjct: 350 G-----WGPMLRALREYTGEPHRAEFV-RTIGEVDYINDSKGTNVGATVAALEGL-GQPV 402
Query: 296 VILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVAN 355
V++ GG K GQ+ + ++ H R V+ G G I + L + G +PC A +
Sbjct: 403 VLIAGGLGK---GQDFSPLAPVV--TRHARAVVLIGTDGPEIGRVLADTG--VPCVAAQD 455
Query: 356 MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
M+DAV +A GDA++LSP CAS D FRN+ HRG VF E
Sbjct: 456 MRDAVRRGAELAQPGDAVLLSPACASMDMFRNYPHRGAVFAE 497
>gi|311103999|ref|YP_003976852.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Achromobacter
xylosoxidans A8]
gi|310758688|gb|ADP14137.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Achromobacter
xylosoxidans A8]
Length = 510
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 137/403 (33%), Positives = 191/403 (47%), Gaps = 55/403 (13%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
R +++L + PR +L VTGTNGK+TV Q++ G+ GN+ +P + AA
Sbjct: 118 RALADLAETREYRPR---LLTVTGTNGKTTVTALTRQLIEASGLSVVAAGNI-SPAALAA 173
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
S P QV V+E+SS+Q+E + VVLN+T DHL+ H +M+ YA K
Sbjct: 174 LMDALDAESLP--QVWVLELSSFQLETTHSLMA-DAGVVLNVTQDHLDWHGSMEAYAQAK 230
Query: 147 CHLFS---------------HMVNT--KLGLLPFGNQHLNEAIKGHRFNL----AWIGAF 185
L MV T L + FG + + E + L AW+ A
Sbjct: 231 ARLLKMARVAIVNRDDPYTVDMVATLNALNVRSFG-RDVPELVGDMGLELGQGVAWLVAC 289
Query: 186 PGVKIDTEA------KTASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLGLDI 238
D A K A V A G +S+L + +++ G HN NA A LD+
Sbjct: 290 EPNDFDEPAPPVRRKKDAPEPVRAKGRMSRLMPVDALRIRGIHNALNALAALQLARCLDL 349
Query: 239 GVDVEALNSTIEILRT---PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKC 295
G + + LR PHR V R I GV +++DSK TN+ AT L L G +
Sbjct: 350 G-----WGAMLRALREYAGEPHRAAFV-RTIGGVDYINDSKGTNVGATVAALEGL-GQQV 402
Query: 296 VILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVA 354
V++ GGQ K GQ+ F LI + H R V+ G G I + L + G + C
Sbjct: 403 VLIAGGQGK---GQD---FAPLIPGVTQHARAVMLIGQDGPEIGRVLASTG--VQCVMAE 454
Query: 355 NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
++DAV A +A GDA++LSP CAS D FRN+ HRG VF E
Sbjct: 455 TLRDAVRGAAELAQPGDAVLLSPACASLDMFRNYPHRGQVFVE 497
>gi|340779136|ref|ZP_08699079.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acetobacter
aceti NBRC 14818]
Length = 464
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 126/387 (32%), Positives = 188/387 (48%), Gaps = 42/387 (10%)
Query: 24 SGKRVMSELDFAAQVIPRS---IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
+G ++S+ D Q + +S + +TGTNGKST + +L H G+ GGNLG
Sbjct: 100 AGVPILSDADLLFQAVRKSGSKARFAGITGTNGKSTTTALLAHLLRHAGLPVAEGGNLG- 158
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTM 139
P S ++LP P V V+E+SSY +E + +F + +LNLTPDHL+RH M
Sbjct: 159 PAS------LSLPL-LPDNGVYVLEMSSYMLERLATLHF--DTACLLNLTPDHLDRHGDM 209
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGN---QHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT 196
YA K H+F M + L ++ G+ + + ++K + I + +T
Sbjct: 210 AGYAAAKAHIFDRMTGSDLAVIGNGDAWCRDIAASVKARDIPVETISG-------QDDET 262
Query: 197 ASFEVPAVGVVSQ---LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
A F + VVS + + G HN N A AAL+ + L +GV +L S I
Sbjct: 263 ADFHLHEGAVVSHGMVIARPGKTLPGTHNAEN-ACAALA-MALRLGVASSSLASGIGDFA 320
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
HR + V DI GV +VDDSKATN +A L + V + GG AK + G
Sbjct: 321 GLAHRQKHV-ADINGVAYVDDSKATNADAASRALGCYS--RIVWIAGGVAK------AGG 371
Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA- 372
L+ + G ++ +TL + +P V +++ A+ AR+ A DA
Sbjct: 372 IADLVPYFSRITKTFLIGKDAPILAETLAAH--KVPYEIVGDLEHAIPTARQAAETEDAE 429
Query: 373 -IVLSPGCASFDEFRNFEHRGMVFQEL 398
++LSP CASFD+F FE RG+ F EL
Sbjct: 430 VVLLSPACASFDQFPGFEARGLRFAEL 456
>gi|390959238|ref|YP_006422995.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Terriglobus roseus
DSM 18391]
gi|390414156|gb|AFL89660.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Terriglobus roseus
DSM 18391]
Length = 450
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 113/365 (30%), Positives = 178/365 (48%), Gaps = 37/365 (10%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
+++A+TG+NGK+T + VG +L H G+E VGGN+G P+ E L + +V
Sbjct: 109 RVVAITGSNGKTTTTSLVGHILEHAGLETKVGGNIGLPVVE-------LVEGSTEKTWSV 161
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+EVSS+Q+E + F P ++ VLN+TPDHL+RH + +NYA K + + +L
Sbjct: 162 LEVSSFQLET-IETFRPHIAAVLNITPDHLDRHGSFENYAAAKARITENQTAEDFLVLNA 220
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV----------SQLQLH 213
++ + + W F GV+ K +F V A GV + +
Sbjct: 221 EDKPTQMVAAKTKPQIYW---FSGVR---RVKQGAF-VHADGVYFLAKEGGTPEPVMPVA 273
Query: 214 NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
+ + G HN N +AA+++ L GV E + + HR+Q V R ++GV + +
Sbjct: 274 EIPLPGAHNVEN-VLAAIAMARL-AGVSAEVVREAVGTFTAVEHRLQFV-RSVRGVDYYN 330
Query: 274 DSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYS 333
DSKATN++AT L G VI LGG+ K + + +L+ PL R V +
Sbjct: 331 DSKATNVDATAKALASFAGGVRVI-LGGKDK------GSDYTELL-PLLKERTVAVYTIG 382
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
+ + +AV A A G+ ++L+P CASFD+F ++E RG
Sbjct: 383 AAAEIIAAQIGS-EVSLTPAGTLAEAVRMASAEAKAGETVLLAPACASFDQFTSYEDRGR 441
Query: 394 VFQEL 398
VF EL
Sbjct: 442 VFMEL 446
>gi|189485185|ref|YP_001956126.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [uncultured Termite
group 1 bacterium phylotype Rs-D17]
gi|170287144|dbj|BAG13665.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [uncultured Termite
group 1 bacterium phylotype Rs-D17]
Length = 441
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 113/382 (29%), Positives = 195/382 (51%), Gaps = 38/382 (9%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
++MSEL F+ + + KI+AV+GTNGK+TV + +++ ++ V GN+G PL++ A
Sbjct: 84 KIMSELAFSLEN-SKYKKIMAVSGTNGKTTVTDLISKIIKAAHKDSIVSGNIGCPLADKA 142
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQM-EIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALT 145
L +++ F +E+SSYQ+ + P+ F P +SV+LN+TPDHLE HKTMK Y
Sbjct: 143 -----LKTTETTF--ITMELSSYQLGDTPD--FRPAISVLLNITPDHLEYHKTMKAYLRA 193
Query: 146 KCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVG 205
K ++F + + ++ + ++ + + + + + P K F
Sbjct: 194 KENIFINQRDGDFTVINYDDKICRKIFEKTKAAVIFFSKTP-------LKKGVFYDSGSI 246
Query: 206 VVSQLQLH-----NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
V++ + H + ++G HN N + A GV + + + HR++
Sbjct: 247 VINVKEKHYVIKPKINIVGTHNIEN--ILAAVAASYAAGVKPAVIEKIVSKYKGVEHRIE 304
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP 320
V + + GV + +DSK+TN+++T L + +I++GG+ K G ++L++
Sbjct: 305 FV-KTLNGVDYYNDSKSTNIDSTRVALESFDKN-ILIIMGGRDK---GVPYTPLKELVK- 358
Query: 321 LNHHRCVITFGYSGVLIWKTLVNNGLS-IPCFAVANMKDAVNHARRMATNGDAIVLSPGC 379
+ + G + I K L NG S + C NM++AV R A D +LSP C
Sbjct: 359 -QRVKLIFLIGEASDKIKKDL--NGASFVDC---GNMENAVKQIFRTAVRADIALLSPAC 412
Query: 380 ASFDEFRNFEHRGMVFQELAFS 401
ASFD+F NFE RG VF+++ S
Sbjct: 413 ASFDQFENFEERGKVFKKMVLS 434
>gi|159903953|ref|YP_001551297.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Prochlorococcus marinus str. MIT 9211]
gi|159889129|gb|ABX09343.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
marinus str. MIT 9211]
Length = 457
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 114/390 (29%), Positives = 194/390 (49%), Gaps = 31/390 (7%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L G + SE+ A + + + I + VTGTNGK+TV + +LN I +GGN
Sbjct: 81 LNALRNKGIEIESEISLAWKAL-KHIPWIGVTGTNGKTTVTHMLHHVLNSNQINTAMGGN 139
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI-PNKYFCPTVSVVLNLTPDHLERH 136
+G P S+ A I ++P + V+E+SSYQ+E PN P + + LTPDHLERH
Sbjct: 140 VGIPASQIALDSIRSSRTEPNW--LVMELSSYQLETSPN--ISPKIGIWTTLTPDHLERH 195
Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT 196
+++NY+ K L N+ + + + L A + W+ + G I+
Sbjct: 196 GSLENYSDIKKRLLE---NSSIRIYNLDDHFLKNA-RSKLMEGIWV-STNGAAINN--NQ 248
Query: 197 ASFEVPAVGVVSQ-----LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
A F + + G + + L + + GRHN N + ++ +IG+ + I
Sbjct: 249 ADFWITSKGKLYEKGEEILDTTLLNIPGRHNLQN--LLLVTAAAREIGLSPRDIEQAIAS 306
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQES 311
+ PHR++ + +I+G+ +DSKATN EA GL + +++ GGQ+K N +
Sbjct: 307 FKGVPHRLEKI-ANIKGIEIFNDSKATNYEAAKIGLEAVPS-PTIVIAGGQSKKGNPND- 363
Query: 312 NGFEKLIEPLNHHRC-VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA--T 368
++ LN C V+ FG S ++ + ++ S P ++ DA+ +A
Sbjct: 364 -----WLQALNKKACAVVLFGASANTLFDLIRDSKFSGPVNCFPSLNDAIETVFNLAFEE 418
Query: 369 NGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
+I+LSP CASFD+++++E RG F+++
Sbjct: 419 KAKSILLSPACASFDQYKDYEERGNEFKKI 448
>gi|206895540|ref|YP_002247022.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coprothermobacter
proteolyticus DSM 5265]
gi|206738157|gb|ACI17235.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coprothermobacter
proteolyticus DSM 5265]
Length = 441
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 134/393 (34%), Positives = 197/393 (50%), Gaps = 33/393 (8%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
F L L L G V+ EL+ + R +AVTGTNGK+T +F+G +L G
Sbjct: 73 FSLDHPVLRSLKDRGVPVVGELELSFDA-SRWNYWIAVTGTNGKTTTTSFIGHLLRTAGF 131
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTP 130
VGGN+G P++ + P S+ + V EVSS+Q+E + F P V+V LNLTP
Sbjct: 132 NVVVGGNIGVPVTS----FLNEPISE---TIIVAEVSSFQLETVHT-FRPQVAVFLNLTP 183
Query: 131 DHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKI 190
DHL+RH +M+NY TK +F LG+L ++ + I + G G
Sbjct: 184 DHLDRHGSMENYFQTKARIFKLQQPQDLGVLNAEDRWASSLIGSLKSRTLAFGIEKG--- 240
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVL---GLDIGVDVEAL 245
D V V S + ++K+ GRHN N A VAA L G D G
Sbjct: 241 DVHWSEGFLNVLGTTVAS---VSDVKLRGRHNLANIAAGVAACYHLLPDGFDFG------ 291
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKV 305
S I P HR++ V R + GV++ DDSKATN ++T L + V++LGG+ K
Sbjct: 292 -SAISQFCAPEHRIEFV-RSVGGVSFYDDSKATNPDSTIVALEAFQ-EPVVVILGGRNK- 347
Query: 306 LNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR 365
G + + I+ + + + G + I ++L+ NG A ++++AV+ A
Sbjct: 348 --GMDFAALAEFIKRKSTVKWAVVMGEAKESIKESLLANGFENISEA-DSLEEAVHLAYE 404
Query: 366 MATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
+A GD ++LSP CASFD F+NFE RG F+E+
Sbjct: 405 IAAPGDVVLLSPACASFDMFKNFEERGDRFKEI 437
>gi|366162519|ref|ZP_09462274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acetivibrio
cellulolyticus CD2]
Length = 464
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 113/388 (29%), Positives = 187/388 (48%), Gaps = 36/388 (9%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++ SE++ +V P +I AVTG++GK+T T + ML G ++GGN+G PL
Sbjct: 101 GAQITSEMEVFFEVCPA--QIFAVTGSDGKTTTTTLIYNMLTAQGYNCWLGGNIGTPL-- 156
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
++ + V+E+SS+Q+ P V+VV NL P+HL+ HK+M Y
Sbjct: 157 -----LSKIDEIKETDKVVLELSSFQLHTMT--LSPNVAVVTNLAPNHLDMHKSMDEYIE 209
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF----PGVKIDTEAKTASFE 200
K ++F H + +L F N E K + N+ + G K+D E S
Sbjct: 210 AKKNIFLHQSKSDKVILNFDNDITREFSKDVKGNVVYFSRVNKIDSGAKMDGEMLVYSDG 269
Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
+V+ ++ + G HN N A +V+ V+++ + + HR++
Sbjct: 270 KDIREIVNS---GDIVIPGVHNIENYLAAIAAVIDY---VEIDTIKRVATTFKGVEHRIE 323
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP 320
+V R++ G+ + +DS A++ T GL K K +++ GG K + ++ + E
Sbjct: 324 LV-RELDGIKFYNDSIASSPSRTIAGLNSFK-QKVILIAGGYDKKI------PYDVMGEV 375
Query: 321 L-NHHRCVITFGYSGVLIWKTLVN------NGLSIPCFAVANMKDAVNHARRMATNGDAI 373
L N +C++ G + I K L++ NG I + +K+AV A A +GD I
Sbjct: 376 LVNKVKCLVLVGQTAPKIEKALLDEVQRTGNGKDINVIKCSTLKEAVQKAYEFAKSGDII 435
Query: 374 VLSPGCASFDEFRNFEHRGMVFQELAFS 401
+SP ASFD F+NFE RG F+E S
Sbjct: 436 TMSPASASFDMFKNFEERGKQFKEFVNS 463
>gi|328955355|ref|YP_004372688.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coriobacterium
glomerans PW2]
gi|328455679|gb|AEB06873.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Coriobacterium
glomerans PW2]
Length = 470
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 120/376 (31%), Positives = 183/376 (48%), Gaps = 25/376 (6%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
+M E +FA ++ P + +AVTGTNGK+T V+ GQ+L+ I V GN+G E A
Sbjct: 97 IMGEPEFAWRLSPE--RWIAVTGTNGKTTTVSLTGQLLSAARIPCEVVGNIG----ETAI 150
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ F V E+SSYQ+ ++ F P +V+LN+TPDHL H+ +NYA K
Sbjct: 151 SQVDRRQDGDWF---VAELSSYQLATTSE-FHPRAAVLLNITPDHLRWHRGFENYARAKL 206
Query: 148 HLFSHMVNTKLGLLPFGNQHL----NEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203
+ ++ L ++ + L ++ I HR L P + V
Sbjct: 207 KILQNLDENDLAIIDVDDPGLRRLGSQVIASHRRILRLAHDDPASVDAAFVRAGRLVVRL 266
Query: 204 VGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
G+ L ++ + V G HN NA A+ S L G A++ + + HRM+
Sbjct: 267 DGIEHDLARVSELAVAGAHNVSNALAASASALLA--GASDAAVSEGLRAFSSLEHRMEPA 324
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322
DI GV + +DSKATN +A L G + ++LLGG K G +GF + +
Sbjct: 325 G-DIDGVRFYNDSKATNTDAVEKALTAFPGDRVILLLGGYDK---GTPLHGFATRV--VQ 378
Query: 323 HHRCVITFGYSGVLIWKTLVN--NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 380
V+ FG + + +GL + ++ DAV+ AR +A GD I+LSP C+
Sbjct: 379 QIGAVVCFGQARRRFMDAMTGAASGLDVDVAEADDLLDAVDVARSLACRGDVILLSPACS 438
Query: 381 SFDEFRNFEHRGMVFQ 396
SFDEF++FE RG F+
Sbjct: 439 SFDEFQDFEERGRRFK 454
>gi|301063235|ref|ZP_07203784.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [delta
proteobacterium NaphS2]
gi|300442663|gb|EFK06879.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [delta
proteobacterium NaphS2]
Length = 467
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 107/375 (28%), Positives = 183/375 (48%), Gaps = 29/375 (7%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
++ E++ AA+ + + I+A TGTNGK+TV +F+G+ML G+ FVGGN+G PL+
Sbjct: 106 IIGEMELAARHV--DVPIIAATGTNGKTTVTSFLGRMLEDQGLAVFVGGNIGTPLT---- 159
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
A + K VVE+SS+Q++ + F P +S++LN++PDHL+R+ Y +K
Sbjct: 160 ---AYLMGEMKADYLVVEISSFQLDTIER-FTPEISIILNISPDHLDRYADYSAYIHSKL 215
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
+F + + +L + L + ++ G G ID + + AV
Sbjct: 216 RIFENQGAGQTVILNDDDIVLKKTTPPEGTSVLRYGLKKGAGIDAFIENEGI-LSAVTEK 274
Query: 208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQ 267
+ L + G HN N + A+ + G +G+ E + TI + +R++ V +
Sbjct: 275 GRFNLSAFSLPGAHNLEN--LLAVVLAGQALGLAPEPIQKTINAFKGLSNRLERVCANGH 332
Query: 268 G-----VTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322
G V + +DSKATN++A + +++ GG+ K N ++ L+
Sbjct: 333 GFLQKKVQFYNDSKATNVDAAVRAVQSFD-KPLILIAGGRHKGSN------YQPLVNACK 385
Query: 323 HH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
H + + G S L+ + P M DAV A MA +GD ++L+P C+S
Sbjct: 386 GHVKGAVFMGESASLLAEAFTG---ETPFSLAETMPDAVKKAAHMAESGDVVLLAPACSS 442
Query: 382 FDEFRNFEHRGMVFQ 396
FD F N++ RG F+
Sbjct: 443 FDMFENYDQRGRAFK 457
>gi|365873705|ref|ZP_09413238.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermanaerovibrio
velox DSM 12556]
gi|363983792|gb|EHM09999.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermanaerovibrio
velox DSM 12556]
Length = 463
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 123/397 (30%), Positives = 197/397 (49%), Gaps = 38/397 (9%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L+ G V+ ELDF A + + ++AVTG+NGK+T +G + LG++ GN
Sbjct: 87 LSLARDKGIPVVGELDFVAPFL--DVPVIAVTGSNGKTTTTGMLGHFFSSLGLKVVTAGN 144
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTV----SVVLNLTPDHL 133
+GNP++ +P QV V EVSS+Q+ ++C + SVV N+ PDH+
Sbjct: 145 IGNPIA-------LVPVCFSDSQVVVAEVSSFQL-----FWCSSATFVGSVVTNIAPDHI 192
Query: 134 ERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQH-LNEAIKGHR-FNLAWIGAF--PGVK 189
+ H + +NY +K + + ++ + + L + H+ L W A V
Sbjct: 193 DWHGSFENYVASKKRAMERTMLSGFSIIQRSDANILGASGLSHKVLTLTWGHALGEQDVC 252
Query: 190 IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG-LDIGVDVEALNST 248
+D +AK A + + + +K++G+HN NAA+A S L V E +N
Sbjct: 253 LDDDAKEARMILDGQ-PIRLFRFEEVKLLGKHNLENAAMALASAAMFLRRPVSGEEVN-- 309
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAK 304
I + PPHR ++ + GV +VDDSK TN+ AT T L LK G K +ILLGG+ K
Sbjct: 310 IAGFKAPPHRCELAGV-VNGVIFVDDSKGTNVAATVTALKSLKCPGNGRK-IILLGGRGK 367
Query: 305 VLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR 364
G+ + + +H + +G G+ I L G S + V ++ DAVN A
Sbjct: 368 ---GETYELLARAVLEECYH--AVLYGEEGMAIGAALSKAGFSNWVY-VNDLNDAVNKAY 421
Query: 365 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 401
+A D ++LSP C S+D++ +++ RG F+ L S
Sbjct: 422 ELARPNDMVLLSPACTSWDQYSSYKERGDHFKRLVAS 458
>gi|189462921|ref|ZP_03011706.1| hypothetical protein BACCOP_03622 [Bacteroides coprocola DSM 17136]
gi|189430348|gb|EDU99332.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
coprocola DSM 17136]
Length = 444
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 115/392 (29%), Positives = 198/392 (50%), Gaps = 50/392 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 83 LKEQGTPIISEIEFAGRYT--NAKMICITGSNGKTTTTSLIYHIFKKAGLNVGLAGNIGQ 140
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L+ C + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 141 SLAYQVAEC--------NYDYYVIELSSFQLD--NMYKFHANIAVLMNITPDHLDRYDYK 190
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + + P + L++ I GH + A G+ E
Sbjct: 191 MQNYVDAKFRIIQNQTDNDAFIFWNDDPVIQKELHKYGIHGHYYPFAEKKE-EGLAAFVE 249
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI-GVDVEALNSTIEIL 252
F P + ++ + + G HN N+ A +S +I G+ E + +
Sbjct: 250 QNKVYFTKP---IEFNMEQEELALTGTHNLFNSMAAGISA---NIAGIRKECIREALSDF 303
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
+ HR++ V R ++GV +++DSKATN+ + L +K K V++LGG+ K G + N
Sbjct: 304 KGVEHRLEKVTR-VRGVDYINDSKATNVNSCWYALNSMKT-KTVLILGGKDK---GNDYN 358
Query: 313 GFEKLIEPLNHHRCVITFGYSGVLIWKTLVN-------NGLSIPCFAVANMKDAVNHARR 365
L++ +C SG LI+ L N +G +P V +MKDAV+ A R
Sbjct: 359 EIADLVK----EKC------SG-LIFLGLHNEKLHDFFDGFGLPIADVQSMKDAVDAAYR 407
Query: 366 MATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
MA G+ ++LSP CASFD F+++E RG F+E
Sbjct: 408 MAKKGETVLLSPCCASFDLFKSYEDRGDQFKE 439
>gi|378952681|ref|YP_005210169.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
fluorescens F113]
gi|359762695|gb|AEV64774.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
fluorescens F113]
Length = 448
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 119/368 (32%), Positives = 182/368 (49%), Gaps = 47/368 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL + ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDEVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E + + V+ VLN++ DH++R+ + Y HL H + + F
Sbjct: 162 ELSSFQLETTD-HLGAEVATVLNVSEDHMDRYSGLPAY-----HLAKHRIFRGARQVVFN 215
Query: 165 NQH------LNEAIKGHRFNLAWIGAFPGVKIDTE--AKTASFEVPAVGVVSQLQLHNMK 216
Q L E + F L + F G + E K +FE + + + +K
Sbjct: 216 RQDALTRPLLGEGMPCWSFGLG-VPDFKGFGLREENGEKYLAFEFQNL-----MPVRELK 269
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
+ G HN A A LG +G+ +A+ S + HR Q V RD+ GV W +DSK
Sbjct: 270 IRGAHN--QANALAALALGHAVGLPFDAMLSALRTFAGLEHRCQWV-RDLDGVAWYNDSK 326
Query: 277 ATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFG 331
ATN+ A + D++G K V++ GG K + F+ L +P+ + R V+ G
Sbjct: 327 ATNVGAALAAIEGLGADIEG-KLVLIAGGDGKGAD------FKDLRDPVAANCRAVVLMG 379
Query: 332 YSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 391
LI + L G ++P V ++ +AV R +A GDA++LSP CASFD F+N+E R
Sbjct: 380 RDRELIAQAL---GDAVPLVRVGSLDEAVQQCRALAHPGDAVLLSPACASFDMFKNYEER 436
Query: 392 GMVFQELA 399
G +F A
Sbjct: 437 GQLFARAA 444
>gi|293603442|ref|ZP_06685867.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Achromobacter
piechaudii ATCC 43553]
gi|292818144|gb|EFF77200.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Achromobacter
piechaudii ATCC 43553]
Length = 510
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 134/403 (33%), Positives = 190/403 (47%), Gaps = 55/403 (13%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
R +++L + PR +L VTGTNGK+TV +++ G+ GN+ A
Sbjct: 118 RALADLAETQEYRPR---LLTVTGTNGKTTVTALTRDLIDASGLSVVAAGNISPAALTAL 174
Query: 87 FHCI---ALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
+ ALP QV V+E+SS+Q+E + +VVLN+T DHL+ H M YA
Sbjct: 175 MDALDNDALP------QVWVLELSSFQLET-TRSLMADAAVVLNVTQDHLDWHGGMDAYA 227
Query: 144 LTKCHLFS---------------HMVNT--KLGLLPFGNQHLNEAIKGHRFNL----AWI 182
K + + MV T L + FG + + E + L AW+
Sbjct: 228 AAKARILTMARIAIVNRDDPLTIAMVPTVSALNVRSFG-RDMPELVGDMGLELGQGVAWL 286
Query: 183 GAFPGVKIDTEA------KTASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLG 235
A D A K A V A G +S+L + +++ G HN NA A
Sbjct: 287 VASEPSDFDEPAPPTRRKKDAPEPVRANGRMSRLMPVDALRIRGIHNALNALAALQLARC 346
Query: 236 LDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKC 295
LD+G A+ T+ PHR V R I GV +++DSK TN+ AT L L G
Sbjct: 347 LDLGWG--AMLRTLREYAGEPHRAAFV-RQIGGVDYINDSKGTNVGATVAALEGL-GQPV 402
Query: 296 VILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVA 354
V++ GGQ K GQ+ F LI ++ H R V+ G G I + L + G++ C V
Sbjct: 403 VLIAGGQGK---GQD---FSPLIPVVSRHARAVMLIGVDGPEIGRVLASTGVN--CITVD 454
Query: 355 NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
++ AV A +A GDA++LSP CAS D FRN+ HRG VF E
Sbjct: 455 SLHAAVRGAAELAQPGDAVLLSPACASLDMFRNYPHRGQVFME 497
>gi|330811581|ref|YP_004356043.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|423699137|ref|ZP_17673627.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pseudomonas
fluorescens Q8r1-96]
gi|327379689|gb|AEA71039.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|387997119|gb|EIK58449.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pseudomonas
fluorescens Q8r1-96]
Length = 448
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 119/368 (32%), Positives = 181/368 (49%), Gaps = 47/368 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IIAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E + + V+ VLN++ DH++R+ + Y HL H + + F
Sbjct: 162 ELSSFQLETTD-HLGAEVATVLNVSEDHMDRYSGLPAY-----HLAKHRIFRGARQVVFN 215
Query: 165 NQH------LNEAIKGHRFNLAWIGAFPGVKIDTE--AKTASFEVPAVGVVSQLQLHNMK 216
Q L E + F L + F G + E K +FE + + + +K
Sbjct: 216 RQDALTRPLLGEGMPCWSFGLG-VPDFKGFGLREENGEKYLAFEFQNL-----MPVRELK 269
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
+ G HN A A LG +G+ +A+ S + HR Q V RD+ GV W +DSK
Sbjct: 270 IRGAHN--QANALAALALGHAVGLPFDAMLSALRTFAGLEHRCQWV-RDLDGVAWYNDSK 326
Query: 277 ATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFG 331
ATN+ A + D++G K V++ GG K + F+ L +P+ + R V+ G
Sbjct: 327 ATNVGAALAAIEGLGADIEG-KLVLIAGGDGKGAD------FKDLRDPVAANCRAVVLMG 379
Query: 332 YSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 391
LI + L G ++P V ++ +AV R +A GDA++LSP CASFD F+N+E R
Sbjct: 380 RDRELIAQAL---GDAVPLVRVGSLDEAVQQCRALAHPGDAVLLSPACASFDMFKNYEER 436
Query: 392 GMVFQELA 399
G +F A
Sbjct: 437 GQLFARAA 444
>gi|192359523|ref|YP_001983387.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cellvibrio
japonicus Ueda107]
gi|190685688|gb|ACE83366.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellvibrio
japonicus Ueda107]
Length = 455
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 121/358 (33%), Positives = 174/358 (48%), Gaps = 37/358 (10%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M GI+ VGGNLG P AL + ++ V+
Sbjct: 118 MVAITGSNAKSTVTTLVGEMAKAAGIQVAVGGNLGTP---------ALELLRDDIELYVM 168
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF---SHMVNTKLGLL 161
E+SS+Q+E NK V+ +LN++ DHL+R+ M+ Y L K ++ ++V + +L
Sbjct: 169 ELSSFQLETVNK-LNAKVATILNISADHLDRYPDMRAYILAKLRIYFGAENIVVNRNDIL 227
Query: 162 PFGNQHLNEAIKGHRFN-LAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGR 220
+ L K F A GAF + D E A P L +K+ GR
Sbjct: 228 T--HPPLAVGAKPVYFGGRADFGAFGLLDRDGEEYLAKNLTPL------LPARELKIRGR 279
Query: 221 HNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
HN NA A I + A+ + R HR + V I GV + +DSK TN+
Sbjct: 280 HNIDNALAALALGDAAGI--PMAAMLGALREFRGLRHRCEYVA-SIDGVEFYNDSKGTNI 336
Query: 281 EATCTGLMDLK--GHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITF-GYSGVLI 337
AT + L + ++ GG K GQ+ F +L L RCV+ G LI
Sbjct: 337 GATLAAINGLARVPSRLFVIAGGDGK---GQD---FTELTASLVASRCVLVLIGRDAPLI 390
Query: 338 WKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
+ G +P +KDAVN + +AT GDA++LSP CASFD F+N+E RG F
Sbjct: 391 ASAV---GEQVPVHVAQTLKDAVNLSLALATAGDAVLLSPACASFDMFKNYEDRGEQF 445
>gi|451949061|ref|YP_007469656.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfocapsa
sulfexigens DSM 10523]
gi|451908409|gb|AGF80003.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfocapsa
sulfexigens DSM 10523]
Length = 461
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 119/382 (31%), Positives = 185/382 (48%), Gaps = 46/382 (12%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
++ EL AA I + +AVTGTNGK+TV +G++L G + FVGGN+G P+
Sbjct: 101 ILGELALAAPYITECV--VAVTGTNGKTTVTALIGELLRASGKKVFVGGNIGTPVLNYLL 158
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ V+E+SS+Q+E FCP + V+LN+TPDHL+RH +M NYA K
Sbjct: 159 -------GDERADYLVLELSSFQLESAGS-FCPHIGVLLNITPDHLDRHGSMVNYAAAKM 210
Query: 148 HLFSHMVNTKLGLLPFGNQ---HLNEAIKGHRF--------NLAWIGAFPGVKIDTEAKT 196
+F H +L + H+ E + G N A G V I +T
Sbjct: 211 KMFVHQKADDKAILCSDDPMCLHVRELLNGQEVYCFGNPASNCAATGNDRKVCITLPDRT 270
Query: 197 ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
S+E+ + S + N AA+ A+S+L G + + + ++
Sbjct: 271 DSYELAGTKLDSHTGMLN---------SCAAILAVSLL----GCEKNDIANGLKYFAPAD 317
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL-GGQAKVLNGQESNGFE 315
HR+Q V R +GV + +DSKATN A + L K VIL+ GG+ K G++ +
Sbjct: 318 HRLQHV-RLRKGVDYYNDSKATNTGAVISALCSFS--KGVILIAGGRDK---GEDYTVLK 371
Query: 316 KLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
+ + L +I G + I + ++P +M+DAV+ A A G+ ++L
Sbjct: 372 EFV--LEKVEKLILIGEAAGAIADAMEG---TVPVLRADSMEDAVSLAADSAQPGEIVLL 426
Query: 376 SPGCASFDEFRNFEHRGMVFQE 397
+P C+SFD F N+ HRG VF +
Sbjct: 427 APACSSFDMFDNYGHRGEVFMQ 448
>gi|239617755|ref|YP_002941077.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kosmotoga olearia
TBF 19.5.1]
gi|239506586|gb|ACR80073.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kosmotoga olearia
TBF 19.5.1]
Length = 449
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 121/391 (30%), Positives = 193/391 (49%), Gaps = 55/391 (14%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIK--ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL 78
+L SGK +EL+FA + + I+ +TGTNGKSTV T VG + G++ F+GGNL
Sbjct: 84 ILSSGKPFTTELEFALDKLKKLEHGVIVGITGTNGKSTVTTMVGHIAKKSGLKTFIGGNL 143
Query: 79 GNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME---IPNKYFCPTVSVVLNLTPDHLER 135
G PL + S +F V VVEVSS+Q+ KYF +S +LN+ DHL+
Sbjct: 144 GTPL---------ISSINERFDVYVVEVSSFQLTWFGKKEKYFH--LSSILNIAQDHLDY 192
Query: 136 HKTMKNYALTKCHLF-----SHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKI 190
H+ M+ YAL K + S ++N+++ L FG+ +++ K I F
Sbjct: 193 HRDMREYALAKLKIIELTSGSSIINSEI-LENFGDLLVDKTKK-------QIIPFS---- 240
Query: 191 DTEAKTASFEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSVLGLD--IGVDVEA 244
+ SF G++ + L ++ G HN NAA+ LGL +G+ V
Sbjct: 241 ---TRKDSFFCLKDGIMRLHKLSISLDSLNFPGIHNQENAAIT----LGLAQFLGIHVHD 293
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
++ HRMQ + I GVT+++DSKATN A L + K +I+L G+ K
Sbjct: 294 ALEKLQDYAFLDHRMQKCGQ-INGVTFINDSKATNAHAVINALENFDLEKVIIILSGKEK 352
Query: 305 VLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR 364
+ LI+ ++ + +I G S + + L G++ V + +A+ A
Sbjct: 353 ------REDYTPLIKKISRVKHIIFLGDSLKSLIERLKKKGITYDV--VHTIDEALKKAV 404
Query: 365 RMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
++ GD ++ SPG +SFD ++N++ RG F
Sbjct: 405 ELSKAGDIVLFSPGGSSFDLYKNYKERGKDF 435
>gi|336323929|ref|YP_004603896.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flexistipes
sinusarabici DSM 4947]
gi|336107510|gb|AEI15328.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flexistipes
sinusarabici DSM 4947]
Length = 422
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 119/387 (30%), Positives = 194/387 (50%), Gaps = 63/387 (16%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
+V SE++ A + +P KI+ VTGTNGKST+ Q+L +G +A GN+G S+ A
Sbjct: 68 KVTSEVEIAYENLPSEAKIVGVTGTNGKSTITYLTWQILQQMGADAVYCGNIGRTFSKVA 127
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKY----FCPTVSVVLNLTPDHLERHKTMKNY 142
+ + + VVE+SSYQ+++ + FC + N+TPDHL+R++ +KNY
Sbjct: 128 I--------EGDYDIYVVELSSYQIDLLKNFRMDAFC-----ICNVTPDHLDRYRDIKNY 174
Query: 143 ALTKCHLFSHMVNTKLGLLP---FGNQHLNEAIKGHRFNLAWIGAFPGVKIDT------E 193
A +K + + LL F N ++++++ F + FP +K D
Sbjct: 175 AASKLAALKFVKAKRSYLLDSPVFENFNISKSV---NFIDPEMKKFPVIKNDILDFGRFY 231
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVA---ALSVLGLDIGVDVEALNSTIE 250
A T S+ + G HN N A A A V GL DV A+ S+++
Sbjct: 232 ADTRSYPLS----------------GWHNLLNLAFAMCLADEVYGLQ--GDVSAIVSSLQ 273
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
L HR + +GV +++DSK+TN E+T T L L G+ ++L+GG+ K + E
Sbjct: 274 SLE---HRCEKFAES-KGVQYINDSKSTNPESTITALNALSGN-VILLMGGRIKNADYSE 328
Query: 311 SNGFEKLIEPLNH-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN 369
+ +P+N + ++ FG + + + L + ++ +AV+ A A +
Sbjct: 329 T------AKPINKVVKKLVLFGEAADSLNRQL-EGYFDVETLVCTSIDEAVDIALLSAKS 381
Query: 370 GDAIVLSPGCASFDEFRNFEHRGMVFQ 396
GD ++LSPGC+SFD F NFE RG F+
Sbjct: 382 GDTVLLSPGCSSFDSFHNFEERGKYFK 408
>gi|123966762|ref|YP_001011843.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Prochlorococcus marinus str. MIT 9515]
gi|158512733|sp|A2BY75.1|MURD_PROM5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|123201128|gb|ABM72736.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
marinus str. MIT 9515]
Length = 477
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/391 (27%), Positives = 189/391 (48%), Gaps = 41/391 (10%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G V+ E++ A + + ++I + +TGTNGK+TV + +L + A GN+G
Sbjct: 99 LKEKGIEVLGEVNIAWESL-KNINWIGITGTNGKTTVTHLLSHILRTNNLLAPFAGNIGT 157
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
PL + A+ ++ S + VA E+SSYQ+EI P + + T DHL+RHKT+
Sbjct: 158 PLCKIAY---SIKSKNIDWLVA--ELSSYQIEIATLCIKPKIGIWTTFTADHLDRHKTLD 212
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFE 200
NY K L ++ + + + HL E K G+ I T +K + +
Sbjct: 213 NYFKIKNSLLKQ---SEFRIYNYDDIHLRENFKSLS---------KGIWITTSSKQSDLD 260
Query: 201 VPAVGVVSQ----------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
+ ++ L L N K+ G HN N +A + IG+ E + + +
Sbjct: 261 HCDYWINNEDFIVERQENLLSLKNFKLKGNHNTQNLLLAIAA--ARKIGLSPEKIKNALL 318
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
PHRM+ +++ + ++DSKATN +++ G+ +KG +I+ GG+ K
Sbjct: 319 SYEQLPHRMETIYQS-NKLEIINDSKATNFDSSTAGIKAIKGAP-IIISGGKLK------ 370
Query: 311 SNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN 369
S + + + +N + V FG S + K ++ G F ++ + +N+ N
Sbjct: 371 SGSYIEWVNIINKKAKAVFLFGESSQTLKKLILEGGFKKDIFIFNDLSEVINYVYSYIEN 430
Query: 370 G--DAIVLSPGCASFDEFRNFEHRGMVFQEL 398
+ ++ SP C+SFD+FRN+E RG +F++L
Sbjct: 431 NQIETLLFSPSCSSFDQFRNYEERGDIFKKL 461
>gi|374620460|ref|ZP_09692994.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
proteobacterium HIMB55]
gi|374303687|gb|EHQ57871.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
proteobacterium HIMB55]
Length = 453
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 128/384 (33%), Positives = 193/384 (50%), Gaps = 43/384 (11%)
Query: 23 QSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q G + ++D F A+ ++ +TG+NGKSTV TFVGQ+L G+ +GGNLG
Sbjct: 93 QIGVEIRGDIDVFVAET---DKPVIGITGSNGKSTVTTFVGQLLKSCGLHVALGGNLGTG 149
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
AL + + + V+E+SS+Q+E V+ VLNLTPDHL+RHKTM
Sbjct: 150 ---------ALDLLEQEADIYVLELSSFQLERAGDLNL-AVATVLNLTPDHLDRHKTMPL 199
Query: 142 YALTKCHLFSH----MVNTKLGL-LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT 196
Y L K +F +VN + L LP G KG AW P ++ +
Sbjct: 200 YHLAKHRIFPGAKHVVVNARDPLTLPVG--------KGDVAWTAWRDDEPDLQQLGIRQI 251
Query: 197 ASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRT 254
A G S ++ ++ V+G N N AA+A GL+ ++ + S L+
Sbjct: 252 EGEPWIAFGFESLIRCADLPVVGEQNTRNVLAALAICRGAGLEFSQLIKGVGS----LQG 307
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL-GGQAKVLNGQESNG 313
PHR + + + GV++++DSKATN+ A + + L K +IL+ GG+AK GQ
Sbjct: 308 LPHRCERIA-ETGGVSFINDSKATNIGAAVSAISGLATGKNIILIAGGEAK---GQSFEA 363
Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
K ++ + VI G + I + L + ++ FA +M AV +AT GD +
Sbjct: 364 LSKAVK--ETCKQVILIGAATTEIAENLPSETAAV--FA-DSMDAAVEIGASLATPGDVV 418
Query: 374 VLSPGCASFDEFRNFEHRGMVFQE 397
+LSP CASFD F N++ RG F+E
Sbjct: 419 LLSPACASFDMFDNYQQRGDSFRE 442
>gi|392407236|ref|YP_006443844.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaerobaculum
mobile DSM 13181]
gi|390620372|gb|AFM21519.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaerobaculum
mobile DSM 13181]
Length = 453
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 123/389 (31%), Positives = 193/389 (49%), Gaps = 43/389 (11%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q G + ELDF + S KI+ VTGTNGKST V +L LG A + GN G PL
Sbjct: 82 QEGLPLKGELDFIYPYL--SGKIIGVTGTNGKSTTAALVHHLLTKLGYNAALAGNFGIPL 139
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ A KF V+EVSS+Q+ +F +++V N+ PDH++ H + + Y
Sbjct: 140 ANFAM---------KKFDYIVIEVSSFQLHWAT-HFSFDIAIVTNICPDHIDWHGSFEAY 189
Query: 143 ALTKCHLFSHMV--------NTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP--GVKIDT 192
K + + + LL GN+ KG R L W P G +
Sbjct: 190 VKAKRRIIDLLAPDGYCIYRTKEEDLLQIGNR------KGAR--LYWSSNTPVYGNAVQD 241
Query: 193 EAKTASFEVPAVGVVSQLQLHN---MKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
+ ++ EV + L+L + + + GRHN NAA+A +V L G DV + ++
Sbjct: 242 DLVLSNSEVVLMANDHNLKLFSPTTLPLFGRHNVENAAMAMAAVYYL--GRDVNKASKSL 299
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
+ PHR + V GV ++DDSK TN+ +T T + + G K V++LGG+ K G+
Sbjct: 300 LDFKNLPHRCERVGEK-DGVLFIDDSKGTNVASTITAITSIPGRK-VVILGGRGK---GE 354
Query: 310 ESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN 369
+ + K+++ H + I G I K L F V++M++AV+ A ++A
Sbjct: 355 QYDELAKVVK--EHVKAAILLGEEKEAISKALEEAKFYNFYF-VSSMEEAVSMAFKIADQ 411
Query: 370 GDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
G+ ++LSP C S+D ++N+ RGM FQ++
Sbjct: 412 GEIVLLSPACTSWDMYKNYHERGMHFQKI 440
>gi|300857279|ref|YP_003782263.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
ljungdahlii DSM 13528]
gi|300437394|gb|ADK17161.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
ljungdahlii DSM 13528]
Length = 458
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 119/405 (29%), Positives = 199/405 (49%), Gaps = 56/405 (13%)
Query: 12 QLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE 71
++ + L Q+G V SE++ + P KI VTG++GK+T T + ML G +
Sbjct: 88 RIDSPALVKAKQNGAYVTSEMEEFIKYCP--AKIYGVTGSDGKTTTTTLIYNMLKEQGYK 145
Query: 72 AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQ---MEIPNKYFCPTVSVVLNL 128
++VGGN+G PL F I + K V+E+SS+Q M++ P V+V+ N+
Sbjct: 146 SWVGGNIGAPL----FSRIEEIDPEDK---VVLELSSFQLMGMDV-----SPEVAVITNI 193
Query: 129 TPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV 188
+P+HL+ HK M+ Y K +F + N + +L N+ N +K + G
Sbjct: 194 SPNHLDIHKDMEEYVNAKKSIFKYQGNQDVVILNRDNECTNAMVKEAK------GKVRQF 247
Query: 189 KIDTEAKTASF---EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD-VEA 244
I+ E + + ++ + ++ +K+ G HN N + A S + D+ VD ++
Sbjct: 248 SIEEELTSGGYLKGDILCIDGKKVCKISEVKLRGMHNVANL-LTAFSAIKEDVSVDNMKK 306
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
+ +T E + HR + V R++ GV + +DS A++ T GL K VIL+ G
Sbjct: 307 VATTFEGVE---HRCEFV-RELDGVKYYNDSIASSPTRTLAGLRAF--DKPVILIAG--- 357
Query: 305 VLNGQESNGFEKLI-------EPLNHHRCVITFGYSGVLIWKTL----VNNGLSIPCFAV 353
G++K I E + + +I G + I K+ G+ +P +V
Sbjct: 358 --------GYDKKIPFDVLAEEGYSKIKTLILMGATKDKIKKSFEKLKCEKGIDVPIVSV 409
Query: 354 ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
++ DAVN A+ ++TNGD + SP CASFD F NFE RG F+++
Sbjct: 410 DSLTDAVNVAKELSTNGDIVTFSPACASFDMFPNFEVRGNAFKDI 454
>gi|388259729|ref|ZP_10136898.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellvibrio sp. BR]
gi|387936455|gb|EIK43017.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellvibrio sp. BR]
Length = 446
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 118/367 (32%), Positives = 179/367 (48%), Gaps = 39/367 (10%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+N KSTV T VG+M GI VGGNLG P AL ++ V+
Sbjct: 109 IVAITGSNAKSTVTTLVGEMAKAAGINVAVGGNLGTP---------ALELLNDSVELYVM 159
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF---SHMVNTKLGLL 161
E+SS+Q+E K V+ +LN++ DHL+R++ M+ Y L K ++ H+V + +L
Sbjct: 160 ELSSFQLETVTK-LNAKVATILNISADHLDRYENMRAYILAKLRVYFGAEHIVVNRNDVL 218
Query: 162 PFGNQHLNEAIKGHRFN-LAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGR 220
+ L +K F A G+F + D E A + + +KV GR
Sbjct: 219 T--HPPLAAGVKPIYFGGRADFGSFGLLTRD------GIEYLAKNLTPLMAASELKVRGR 270
Query: 221 HNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
HN NA A I +D A+ T++ HR + V V + +DSK TN+
Sbjct: 271 HNIDNALAALALGDAAGIPLD--AMLGTLKTFSGLRHRCEFVAEK-NAVEFYNDSKGTNI 327
Query: 281 EATCTGLMDL--KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIW 338
AT + L + +++LGG+ K GQ+ + +N C++ G +I
Sbjct: 328 GATLAAISGLARDPQQLIVILGGEGK---GQDFTELTPALRAINS--CLVLIGRDATVIE 382
Query: 339 KTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF--- 395
+ + + + P +M+DAVN A +A GDA++LSP CASFD F+N+E RG F
Sbjct: 383 QAVAD---AAPIIHAGSMQDAVNKAFALAQPGDAVLLSPACASFDMFKNYEDRGEKFCQA 439
Query: 396 -QELAFS 401
QEL S
Sbjct: 440 VQELCSS 446
>gi|229588488|ref|YP_002870607.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
fluorescens SBW25]
gi|229360354|emb|CAY47211.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
fluorescens SBW25]
Length = 448
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 117/362 (32%), Positives = 183/362 (50%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP---------ALDLLSDDIELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E + V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTHD-LGAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGAKQVVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E + F L+ AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLMGEGLPCWTFGLSKPDFKAF-GIREEHGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S++ HR Q V RD+ GV++ +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSSLRTFGGLEHRCQWV-RDLDGVSYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL-NHHRCVITFGYS 333
N+ A + D++G K V++ GG K + F+ L P+ H R V+ G
Sbjct: 329 NVGAALAAIEGLGADIEG-KLVLIAGGDGKGAD------FKDLKGPVATHCRAVVLIGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
LI L G ++P ++ DA+ H + +A GDA++LSP CASFD F+N+E RG
Sbjct: 382 SDLIAAAL---GDAVPQVRATSLDDAIAHCKALAQPGDAVLLSPACASFDMFKNYEERGQ 438
Query: 394 VF 395
+F
Sbjct: 439 LF 440
>gi|304439979|ref|ZP_07399872.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Peptoniphilus
duerdenii ATCC BAA-1640]
gi|304371471|gb|EFM25084.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Peptoniphilus
duerdenii ATCC BAA-1640]
Length = 431
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 121/407 (29%), Positives = 211/407 (51%), Gaps = 49/407 (12%)
Query: 9 LEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFV 61
++F +K+ G+ L +++S+++FA+ ++ I+A+TGTNGK+T+ T V
Sbjct: 51 IDFAVKSPGIKPESKIIKTLEDKNIKIISDIEFASYFY-KTKDIVAITGTNGKTTITTLV 109
Query: 62 GQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT 121
++LN +G +++ GN+G + + PKF V E SS+Q+ +K F P
Sbjct: 110 NEILNKVG-KSYAVGNIG-------VGVMDVIDYDPKF--IVCEASSFQLAYIDK-FHPH 158
Query: 122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQH---LNEAIKGHRF- 177
V+V+ N+T DHL+ HKT++NY K +++ ++ +L + +N +K +
Sbjct: 159 VAVITNITSDHLDWHKTVENYRKAKENIYKNLEEDDFLILGASCDYVKTINAGVKNTFYY 218
Query: 178 ---NLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234
+L G F D E F+ + +++ ++ + GRHN NA A LS
Sbjct: 219 SYDDLGRPGLFTK---DEEIIFRHFDGTLENI---MKVSDVFIKGRHNIENAMAAILSAY 272
Query: 235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHK 294
L GVD+E + TI+ + HR++ V R G+++ +DSK TN ++T L + K
Sbjct: 273 SL--GVDLEIIVDTIKNFKGVEHRIEFV-RTFNGISYYNDSKGTNPDSTDVALKAFE--K 327
Query: 295 CVILLGGQAKVLNGQESNGFEKLIEPLNHHR--CVITFGYSGVLIWKTLVNNGLSIPCFA 352
V+++GG K + F+KL+E N + ++ G + LI K L I
Sbjct: 328 SVLIIGGYDK------GSDFKKLLED-NKDKITSLVVMGATSELIIKEATE--LGIETTR 378
Query: 353 VANMKDAVNHARRMA-TNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
V +M++AV+ A +A N ++LSP CAS+D + N+E RG F+E+
Sbjct: 379 VKDMEEAVSVATTIARENHSVVLLSPACASWDMYPNYEVRGRHFKEI 425
>gi|398803221|ref|ZP_10562327.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polaromonas sp.
CF318]
gi|398097100|gb|EJL87412.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polaromonas sp.
CF318]
Length = 609
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 125/388 (32%), Positives = 184/388 (47%), Gaps = 62/388 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE---AAFHCIALPSSKPKFQV 101
+LA+TGTNGK+TV + +GQ++ G V GN+G L + A LP QV
Sbjct: 232 VLAITGTNGKTTVTSLLGQLVQRAGKTVAVAGNIGPTLLDTLSAHMDAQTLP------QV 285
Query: 102 AVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTK 157
V+E+SS+Q+ + F PT +VVLN+T DHL+ H M Y K +F + ++N
Sbjct: 286 WVLELSSFQLAD-VQGFEPTAAVVLNITQDHLDWHGDMDAYVAAKAKVFGNSTFMLLNRD 344
Query: 158 ----LGLLP-----------------FGNQHLN-------EAIKGHRFNLAWIGAFPGVK 189
+ +LP FG E + G + W+ +
Sbjct: 345 DARVMAMLPPPVKVRLKAPQLRPHATFGAGEPQRPGDYGIETVNG----MTWL--VRAAE 398
Query: 190 IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
D K E + V + + +++ GRHN NA A + G + + +
Sbjct: 399 ADETIKRRKDEEVELHVQRLMPIEALRIRGRHNATNALAALGLAVA--AGCTLAPMLHGL 456
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKVLNG 308
R PHR++ V ++ V + DDSK TN+ AT L L K V++LGG+ K G
Sbjct: 457 REYRGEPHRVESVAV-VKDVEYFDDSKGTNVGATVAALTGLGLERKLVLILGGEGK---G 512
Query: 309 QESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA 367
Q+ F L +P+ H R V+ G LI + L N IP F A+M++AV A + A
Sbjct: 513 QD---FSPLADPVQRHVRAVVLIGRDAPLIKEVLPRN---IPTFDAASMEEAVTLAAQQA 566
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVF 395
GDA+++SP CASFD F N+EHR VF
Sbjct: 567 QTGDAVLMSPACASFDMFDNYEHRARVF 594
>gi|313673685|ref|YP_004051796.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase [Calditerrivibrio
nitroreducens DSM 19672]
gi|312940441|gb|ADR19633.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Calditerrivibrio
nitroreducens DSM 19672]
Length = 416
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 123/377 (32%), Positives = 191/377 (50%), Gaps = 44/377 (11%)
Query: 26 KRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85
+R+ SEL+ A + I + KI+ +TGTNGKSTV Q+L ++GI A GN+G + +
Sbjct: 67 ERITSELELAFEFI-KDKKIIGITGTNGKSTVTFLTAQLLKNIGINAEFCGNIGVTVGDT 125
Query: 86 AFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALT 145
+ + P V VVEVSS+Q+++ ++ T S + N+TPDHL+R+KTM Y +
Sbjct: 126 --YLLKNP------DVYVVEVSSFQLDLLKRFRFDT-STITNITPDHLDRYKTMDRYITS 176
Query: 146 KCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG----AFPGVKIDTEAKTASFEV 201
K S MV G+ NE K + N+ ++ ++P + FE
Sbjct: 177 K----SRMVEFTEGVSFLEKGGWNEIFKKYE-NIKYVDGELKSYPLLN----GNLLEFED 227
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL-DIGVDVEALNSTIEILRTPPHRMQ 260
V V + + G HN N + A L + + DV L +E L HR +
Sbjct: 228 FYVDV------NRYNLFGFHNIVNLSFALLLTNQIVRLKGDVTGL---VENLTPLEHRCE 278
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP 320
+V +I GV +++DSK TN+++T T L + ++LGG+ K NG F L +
Sbjct: 279 LVT-EINGVKYINDSKGTNVDSTLTALKS-SSYPTTLILGGKDK--NGD----FSVLSDE 330
Query: 321 LNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 379
+N + VI G +G I+ +L + + + V +KDA++ A R G ++ SP C
Sbjct: 331 INKKAKLVICCGAAGEKIYNSL-KDIIDVKIVRVELLKDAISLAYRETKEG-TVLFSPAC 388
Query: 380 ASFDEFRNFEHRGMVFQ 396
ASFDEF NFE RG F+
Sbjct: 389 ASFDEFNNFEERGRFFK 405
>gi|145633134|ref|ZP_01788866.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae 3655]
gi|145635587|ref|ZP_01791285.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae PittAA]
gi|229844909|ref|ZP_04465047.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae 6P18H1]
gi|144986360|gb|EDJ92939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae 3655]
gi|145267149|gb|EDK07155.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae PittAA]
gi|229812290|gb|EEP47981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae 6P18H1]
Length = 437
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 195/410 (47%), Gaps = 53/410 (12%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA +L++G V+ +++ + + I + +TG+NGKSTV
Sbjct: 62 WLLESDMIVISPGLAVKTPEIQTVLKAGVEVIGDIELFCRAATKPI--VGITGSNGKSTV 119
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G++ +GGN+G P AL ++ V+E+SS+Q+E
Sbjct: 120 TTLVYEMAKAAGVKVGMGGNIGIP---------ALSLLNEDCELYVLELSSFQLETTYS- 169
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL------PFGNQHLNEA 171
+ +LN+T DH++R+ +++Y K ++ N K+G+L FG NE
Sbjct: 170 LKAAAATILNVTEDHMDRYMDLEDYRQAKLRIYH---NAKVGVLNNEDRLTFGE---NEN 223
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
H + A A +K + + + + L ++GRHNY N + A
Sbjct: 224 QAKHTVSFAENSADYWLKTENGKQYLMVKDEVI-----LPCEEATLVGRHNYMN--ILAA 276
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L IG++++++ + + + HR Q+ H+ G+ W++DSKATN+ +T L L
Sbjct: 277 TALAQAIGINLDSIRAALRHFKGLDHRFQLAHQ-ANGIRWINDSKATNVGSTVAALAGLY 335
Query: 292 GH-KCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFGYSGVLIWKTLVNNGLSIP 349
K +LLGG K N F +L E +N H FG G L+ K S
Sbjct: 336 IEGKLHLLLGGDGKGAN------FSELAELINQPHIICYCFGRDGALLAK------FSSQ 383
Query: 350 CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
+ M+ A+ R +GD ++LSP CAS D+F +FE RG F LA
Sbjct: 384 SYLFETMEQAIEFLRPTLQSGDMVLLSPACASLDQFASFEKRGEEFTHLA 433
>gi|429745406|ref|ZP_19278824.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sp.
oral taxon 020 str. F0370]
gi|429160026|gb|EKY02508.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sp.
oral taxon 020 str. F0370]
Length = 445
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 110/386 (28%), Positives = 195/386 (50%), Gaps = 35/386 (9%)
Query: 18 LACLLQSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG 76
+A Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + G
Sbjct: 84 IAAFKQNGGRVLGDVEILAHILNARGDKVIAITGSNGKTTVTSLVGHLCRQSGLDTVIAG 143
Query: 77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH 136
N+G P+ EA + K V V+E+SS+Q+E + P + VLN++ DHL+R+
Sbjct: 144 NIGTPVLEA-----EMQRGGKKADVWVLELSSFQLE-NTESLRPAAAAVLNISEDHLDRY 197
Query: 137 KTMKNYALTKCHLFS----HMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT 192
+ +YA TK +F ++N + L A+K ++ W
Sbjct: 198 DDLLDYAHTKDKIFRGEGVQVLNA--------DDALCRAMKRAGRDVKWFSLENQADYWF 249
Query: 193 EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
+ T + + G++ + ++ + G HN N +AAL++ +G+ + L ++
Sbjct: 250 DRDTGRLKAASDGLID---IADIPLQGLHNAAN-VMAALALCEA-VGIPRDTLLPHVKTF 304
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
+ HR++ + + G+T++DDSK TN+ AT + L+ + ++LGG K GQ+
Sbjct: 305 KGLAHRVEKIG-EKNGITFIDDSKGTNVGATAAAVNGLQ-NPLFVILGGLGK---GQD-- 357
Query: 313 GFEKLIEPLN-HHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD 371
F L + L + V+ G I + L G + A +++AV A A +GD
Sbjct: 358 -FTPLADVLRGKAKAVLLIGRDAPQIRRDLA--GADVELIDCATLQEAVQTAYARAKSGD 414
Query: 372 AIVLSPGCASFDEFRNFEHRGMVFQE 397
++LSP CAS D F+N+ HR VF E
Sbjct: 415 IVLLSPACASMDMFKNYAHRSEVFVE 440
>gi|433536048|ref|ZP_20492564.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 77221]
gi|432275852|gb|ELL30918.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 77221]
Length = 445
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 121/390 (31%), Positives = 190/390 (48%), Gaps = 44/390 (11%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
T + G + ++ + G HN N AAVA +GL EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGL----PREALLEHVKTFQ 305
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
PHR++ + GV ++DDSK TN+ AT + L+ + ++LGG K GQ+
Sbjct: 306 GLPHRVEKIGEK-NGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGK---GQD--- 357
Query: 314 FEKLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 372
F L + L + V G I + L +G + A +++AV A A GD
Sbjct: 358 FTPLRDALAGKAKGVFLIGVDAPQIRRDL--DGCDLNMTDCATLEEAVQTAYAQAEAGDI 415
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQELAFSA 402
++LSP CASFD F+ + HR VF E AF A
Sbjct: 416 VLLSPACASFDMFKGYAHRSEVFIE-AFKA 444
>gi|325299145|ref|YP_004259062.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
salanitronis DSM 18170]
gi|324318698|gb|ADY36589.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
salanitronis DSM 18170]
Length = 444
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 116/393 (29%), Positives = 198/393 (50%), Gaps = 52/393 (13%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 83 LREQGTPIISEIEFAGRYT--NAKMICITGSNGKTTTTSLIYHIFKKAGLNVGLAGNIGQ 140
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L+ C + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 141 SLAYQVAEC--------NYDYYVIELSSFQLD--NMYKFHANIAVLMNITPDHLDRYDYK 190
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + + P + L++ I G + A G+ +E
Sbjct: 191 MQNYIDAKFRIIQNQTDNDAFVFWNDDPIIREELHKYGIHGQYYPFAEKRE-DGLAAFSE 249
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALS--VLGLDIGVDVEALNSTIEI 251
F P + ++ + + G HN N+ A +S + G+ EAL+
Sbjct: 250 QDKVYFTKP---IEFNMEQEELALTGTHNLFNSMAAGISANIAGIRKSCIREALSD---- 302
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQES 311
+ HR++ V R ++GV +++DSKATN+ + L +K K V++LGG+ K G +
Sbjct: 303 FKGVEHRLEKVAR-VRGVDYINDSKATNVNSCWYALKSMK-TKTVLILGGKDK---GNDY 357
Query: 312 NGFEKLIEPLNHHRCVITFGYSGVLIWKTLVN-------NGLSIPCFAVANMKDAVNHAR 364
N L+ +C SG LI+ L N +G +P V +MKDAV+ A
Sbjct: 358 NEIAGLV----REKC------SG-LIFLGLHNEKLHAFFDGFGLPIADVQSMKDAVDAAY 406
Query: 365 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
RMA NG+ ++LSP CASFD F+++E RG F+E
Sbjct: 407 RMAKNGETVLLSPCCASFDLFKSYEDRGDQFKE 439
>gi|319776623|ref|YP_004139111.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
influenzae F3047]
gi|329124136|ref|ZP_08252683.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
aegyptius ATCC 11116]
gi|317451214|emb|CBY87447.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
influenzae F3047]
gi|327467561|gb|EGF13059.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
aegyptius ATCC 11116]
Length = 437
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 196/410 (47%), Gaps = 53/410 (12%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA +L++G V+ +++ + + I + +TG+NGKSTV
Sbjct: 62 WLLESDMIVISPGLAVKTPEIQTVLKAGVEVIGDIELFCRAATKPI--VGITGSNGKSTV 119
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G++ +GGN+G P AL ++ V+E+SS+Q+E
Sbjct: 120 TTLVYEMAKAAGVKVGMGGNIGIP---------ALSLLNEDCELYVLELSSFQLETTYS- 169
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL------PFGNQHLNEA 171
+ +LN+T DH++R+ +++Y K ++ N K+G+L FG NE
Sbjct: 170 LKAAAATILNVTEDHMDRYMDLEDYRQAKLRIYH---NAKVGVLNNEDRLTFGE---NEN 223
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
H + A A +K + + + + L ++GRHNY N + A
Sbjct: 224 QAKHTVSFAENSADYWLKTENGKQYLMVKDEVI-----LPCEEATLVGRHNYMN--ILAA 276
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L IG++++++ + + + HR Q+VH+ G+ W++DSKATN+ +T L L
Sbjct: 277 TALAQAIGINLDSIRTALRHFKGLDHRFQLVHQ-ANGIRWINDSKATNVGSTVAALAGLY 335
Query: 292 GH-KCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFGYSGVLIWKTLVNNGLSIP 349
K +LLGG K + F +L E +N H FG G L+ K S
Sbjct: 336 IEGKLHLLLGGDGKGAD------FSELAELINQPHIICYCFGRDGALLAK------FSSQ 383
Query: 350 CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
+ M+ A+ R +GD ++LSP CAS D+F +FE RG F LA
Sbjct: 384 SYLFETMEQAIAFLRPTLQSGDMVLLSPACASLDQFASFEKRGEEFTHLA 433
>gi|198274310|ref|ZP_03206842.1| hypothetical protein BACPLE_00454 [Bacteroides plebeius DSM 17135]
gi|198272800|gb|EDY97069.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
plebeius DSM 17135]
Length = 443
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 113/387 (29%), Positives = 192/387 (49%), Gaps = 40/387 (10%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G ++SE++FA + + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKNQGTPIISEIEFAGRYT--NAKMICITGSNGKTTTTSLIYHIFKKAGLNVGLAGNIGQ 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L+ C + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SLAYQVAEC--------NYDYYVIELSSFQLD--NMYKFHANIAVLMNITPDHLDRYGFE 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + + P + L++ I G F A GV TE
Sbjct: 190 MQNYVDAKFRIIQNQTDDDAFIFWNDDPIIQKELHKYGIHGQYFPFAEKNE-EGVAAFTE 248
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI-GVDVEALNSTIEIL 252
F P + ++ + + G HN N+ A +S +I G+ E + +
Sbjct: 249 ENKVYFTRP---IAFNMEQEELALTGTHNLFNSMAAGISA---NIAGIRKECIREALNDF 302
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
+ HR++ V R ++GV +++DSKATN+ + L +K K +++LGG+ K G + N
Sbjct: 303 KGVEHRLEKVAR-VKGVDYINDSKATNVNSCWYALQSMKT-KTILILGGKDK---GNDYN 357
Query: 313 GFEKLIEPLNHHRC--VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 370
L++ +C +I G + N GL P V +M DAVN A MA G
Sbjct: 358 EIADLVK----EKCSGLIFLGLHNEKLHDFFDNFGL--PIVDVQSMPDAVNAAYNMAKKG 411
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVFQE 397
+ ++LSP CASFD F+++E RG F+E
Sbjct: 412 ETVLLSPCCASFDLFKSYEDRGDQFKE 438
>gi|313106944|ref|ZP_07793147.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
aeruginosa 39016]
gi|386064141|ref|YP_005979445.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa NCGM2.S1]
gi|421170163|ref|ZP_15628137.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa ATCC 700888]
gi|310879649|gb|EFQ38243.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
aeruginosa 39016]
gi|348032700|dbj|BAK88060.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa NCGM2.S1]
gi|404524236|gb|EKA34587.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa ATCC 700888]
Length = 448
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 129/404 (31%), Positives = 192/404 (47%), Gaps = 49/404 (12%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
L+ L G R+ ++D A+ I+A+TG+N KSTV T VG+M
Sbjct: 79 LSLRTPALVQAAAKGVRISGDIDLFAR--EAKAPIVAITGSNAKSTVTTLVGEMAVAADK 136
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTP 130
VGGNLG P AL ++ V+E+SS+Q+E ++ V+ VLN++
Sbjct: 137 RVAVGGNLGTP---------ALDLLADDIELYVLELSSFQLETCDR-LNAEVATVLNVSE 186
Query: 131 DHLERHKTMKNYALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIKGHRFNL--AWIGA 184
DH++R+ M +Y L K +F +VN L + + + F L A
Sbjct: 187 DHMDRYDGMADYHLAKHRIFRGARQVVVNRADALT---RPLIADTVPCWSFGLNKPDFKA 243
Query: 185 FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
F ++ D + K +F+ + L + +K+ G HNY NA A + D A
Sbjct: 244 FGLIEEDGQ-KWLAFQFDKL-----LPVGELKIRGAHNYSNALAALALGHAAGLPFD--A 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL----MDLKGHKCVILLG 300
+ ++ HR Q V R+ QGV++ DDSKATN+ A + D+ G K V+L G
Sbjct: 296 MLGALKAFSGLAHRCQWV-RERQGVSYYDDSKATNVGAALAAIEGLGADIDG-KLVLLAG 353
Query: 301 GQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDA 359
G K + F L EP+ R V+ G LI + L N ++P VA + +A
Sbjct: 354 GDGKGAD------FHDLREPVARFCRAVVLLGRDAGLIAQALGN---AVPLVRVATLDEA 404
Query: 360 VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF----QELA 399
V A +A GDA++LSP CAS D F+NFE RG +F +ELA
Sbjct: 405 VRQAAELAREGDAVLLSPACASLDMFKNFEERGRLFAKAVEELA 448
>gi|385323547|ref|YP_005877986.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
(UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase;
D-glutamic acid adding enzyme) [Neisseria meningitidis
8013]
gi|261391934|emb|CAX49396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
(UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase;
D-glutamic acid adding enzyme) [Neisseria meningitidis
8013]
Length = 445
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 187/383 (48%), Gaps = 43/383 (11%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
T + G + ++ + G HN N AAVA +GL EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGL----PREALLEHVKTFQ 305
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
PHR++ + + GV ++DDSK TN+ AT + L+ + ++LGG K GQ+
Sbjct: 306 GLPHRVEKIGKK-NGVVFIDDSKGTNVGATAAAITGLQ-NPLFVILGGMGK---GQD--- 357
Query: 314 FEKLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 372
F L + L + V G I + L +G + A +++AV A A GD
Sbjct: 358 FTPLRDALAGKAKGVFLIGVDAPQIRRDL--DGCDLNMTDCATLEEAVQKAYAQAEAGDI 415
Query: 373 IVLSPGCASFDEFRNFEHRGMVF 395
++LSP CASFD F+ + HR VF
Sbjct: 416 VLLSPACASFDMFKGYAHRSEVF 438
>gi|395650346|ref|ZP_10438196.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
extremaustralis 14-3 substr. 14-3b]
Length = 448
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 116/362 (32%), Positives = 181/362 (50%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E + V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTHD-LGAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGAKQVVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E + F L AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLMGEGLPCWTFGLGKPDFKAF-GIREENGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S++ HR Q V RD+ GV++ +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSSLRTFGGLEHRCQWV-RDLDGVSYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D+ G K +++ GG K + F+ L P+ H R V+ G
Sbjct: 329 NVGAALAAIEGLGADIDG-KLLLIAGGDGKGAD------FKDLKGPVAEHCRAVVLLGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
LI L G ++P +++ DA+ R +A GDA++LSP CASFD F+N+E RG
Sbjct: 382 ADLIAAAL---GDAVPQVRASSLDDAIAQCRALAQPGDAVLLSPACASFDMFKNYEERGH 438
Query: 394 VF 395
+F
Sbjct: 439 LF 440
>gi|421538568|ref|ZP_15984743.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 93003]
gi|402316238|gb|EJU51787.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 93003]
Length = 445
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 124/390 (31%), Positives = 191/390 (48%), Gaps = 44/390 (11%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++A + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDAVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA L K V V+E+SS+Q+E + PT + VLN++ DHL R+ + +
Sbjct: 149 VLEA-----ELQREGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLNRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKDKIFRGD----------GVQVLNADDAFCRAMKHAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
T + G + ++ + G HN N AAVA +GL EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGL----PREALLEHVKTFQ 305
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
PHR++ + GV ++DDSK TN+ AT + L+ + ++LGG K GQ+
Sbjct: 306 GLPHRVEKIGEK-NGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGK---GQD--- 357
Query: 314 FEKLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 372
F L + L + V G I + L GL++ A +++AV A A GD
Sbjct: 358 FTPLRDALAGKAKGVFLIGVDAPQIRRDLDGCGLNMT--DCATLEEAVQTAYAQAEAGDI 415
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQELAFSA 402
++LSP CASFD F+ + HR VF E AF A
Sbjct: 416 VLLSPACASFDMFKGYAHRSEVFIE-AFKA 444
>gi|261379336|ref|ZP_05983909.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
subflava NJ9703]
gi|284797775|gb|EFC53122.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
subflava NJ9703]
Length = 445
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 120/387 (31%), Positives = 190/387 (49%), Gaps = 45/387 (11%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLAGIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA L K + V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEA-----ELQREGKKADMWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNADDAFCRAMKRAGREVKWFSLEHKADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
T + G + ++ + G HN N AA+A +GL EAL ++ +
Sbjct: 253 TGCLK---QGNEDLIATQDIPLQGLHNAANVMAAIALCEAVGL----PREALLEHVKTFQ 305
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
PHR++ + GV ++DDSK TN+ AT + L+ + ++LGG K GQ+
Sbjct: 306 GLPHRVEKIGEK-NGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGK---GQD--- 357
Query: 314 FEKLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLS-IPCFAVANMKDAVNHARRMATNGD 371
F L + L + V G I + L GL+ I C A +++AV A A GD
Sbjct: 358 FTPLRDALAGKAKGVFLIGVDAPQIRRDLDGCGLNMIDC---ATLEEAVQKAYAQAEAGD 414
Query: 372 AIVLSPGCASFDEFRNFEHRGMVFQEL 398
++LSP CASFD F+ + HR VF E+
Sbjct: 415 IVLLSPACASFDMFKGYAHRSEVFIEV 441
>gi|312959055|ref|ZP_07773574.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
fluorescens WH6]
gi|311286825|gb|EFQ65387.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
fluorescens WH6]
Length = 448
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 116/362 (32%), Positives = 181/362 (50%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL + ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP---------ALDLLSDEVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E + V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTHD-LGAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGAKQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E + F L AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLIGEGMPCWTFGLGKPDFKAF-GIREENGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S++ HR Q V RD+ GV++ +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSSLRAFGGLEHRCQWV-RDLDGVSYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D+ G K V++ GG K + F+ L P+ H R V+ G
Sbjct: 329 NVGAALAAIEGLGADIDG-KLVLIAGGDGKGAD------FKDLKAPVAEHCRAVVLMGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
LI L G ++P ++ DA+ + +A GDA++LSP CASFD F+N+E RG
Sbjct: 382 ADLIAAAL---GDAVPQVRATSLDDAIAQCKALAQPGDAVLLSPACASFDMFKNYEERGQ 438
Query: 394 VF 395
+F
Sbjct: 439 LF 440
>gi|304386674|ref|ZP_07368956.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
meningitidis ATCC 13091]
gi|304339259|gb|EFM05337.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
meningitidis ATCC 13091]
Length = 445
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 187/383 (48%), Gaps = 43/383 (11%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
T + G + ++ + G HN N AAVA +GL EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGL----PREALLEHVKTFQ 305
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
PHR++ + GV ++DDSK TN+ AT + L+ + ++LGG K GQ+
Sbjct: 306 GLPHRVEKIGEK-NGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGK---GQD--- 357
Query: 314 FEKLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 372
F L + L + V G I + L GL++ A +++AV A A GD
Sbjct: 358 FTPLCDALAGKAKGVFLIGIDAPKIRRDLDGCGLNMT--DCATLEEAVQTAYAQAEAGDI 415
Query: 373 IVLSPGCASFDEFRNFEHRGMVF 395
++LSP CASFD F+ + HR VF
Sbjct: 416 VLLSPACASFDMFKGYAHRSEVF 438
>gi|387824847|ref|YP_005824318.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella cf.
novicida 3523]
gi|332184313|gb|AEE26567.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella cf.
novicida 3523]
Length = 417
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 120/379 (31%), Positives = 184/379 (48%), Gaps = 56/379 (14%)
Query: 27 RVMSELDFAAQVIPRS-IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85
+++S++D Q I + K +AVTG+NGKSTVVT +L LG ++ + GN+G P
Sbjct: 80 KIVSDIDIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVGNIGTP---- 135
Query: 86 AFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSV--VLNLTPDHLERHKTMKNYA 143
AL KF +VEVSS+Q+++ N C + V+N++PDHL+R++ + Y
Sbjct: 136 -----ALNKIGEKFDYCIVEVSSFQIDLFN---CVRFDLGCVINVSPDHLDRYQNFEEYK 187
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203
+KL L F N + H + + G + ++ A +
Sbjct: 188 -----------QSKLNLAKFSNDFFVYDV--HNNGIKYAGEYQIIR------GAIYR--- 225
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVA--ALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G + L + + G HN N V L LGLDI +A++S I+ + HR +I
Sbjct: 226 -GSIKLLDITETNLYGEHNLENIIVVLNILDRLGLDIN---QAIDS-IKKFKGLEHRCKI 280
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL-GGQAKVLNGQESNGFEKLIEP 320
V + + G+T+++DSK TN+ AT L + K +ILL GG AK F +I+
Sbjct: 281 VKK-VNGITYINDSKGTNVGATIAALNSITNSKNIILLLGGVAK------GGDFSLMIKS 333
Query: 321 LNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 379
L+ + + V +G I + + C NMK A A + A + I+LSP C
Sbjct: 334 LDKYVKYVYLYGADKEYIESYIKSYCKYQLC---NNMKQAFELASQKAEANEIILLSPAC 390
Query: 380 ASFDEFRNFEHRGMVFQEL 398
ASFDEF + RG VFQ L
Sbjct: 391 ASFDEFTGYVQRGEVFQSL 409
>gi|16273062|ref|NP_439294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae Rd KW20]
gi|260580220|ref|ZP_05848050.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
influenzae RdAW]
gi|1171072|sp|P45063.1|MURD_HAEIN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|1574691|gb|AAC22791.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Haemophilus
influenzae Rd KW20]
gi|260093504|gb|EEW77437.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
influenzae RdAW]
Length = 437
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 119/410 (29%), Positives = 195/410 (47%), Gaps = 53/410 (12%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA L++G V+ +++ + + I + +TG+NGKSTV
Sbjct: 62 WLLESDMIVISPGLAVKTPEIQTALKAGVEVIGDIELFCRAATKPI--VGITGSNGKSTV 119
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G++ +GGN+G P AL ++ V+E+SS+Q+E
Sbjct: 120 TTLVYEMAKAAGVKVGMGGNIGIP---------ALSLLNEDCELYVLELSSFQLETTYS- 169
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL------PFGNQHLNEA 171
+ VLN+T DH++R+ +++Y K ++ N K+G+L FG NE
Sbjct: 170 LKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYH---NAKVGVLNNEDRLTFGE---NEN 223
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
H + A A +K + + + + L ++GRHNY N + A
Sbjct: 224 QAKHTVSFAENSADYWLKTENGKQYLMVKDEVI-----LPCEEATLVGRHNYMN--ILAA 276
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L IG++++++ + + + HR Q+VH+ G+ W++DSKATN+ +T L L
Sbjct: 277 TALAQAIGINLDSIRTALRHFKGLDHRFQLVHQ-ANGIRWINDSKATNVGSTVAALAGLY 335
Query: 292 GH-KCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFGYSGVLIWKTLVNNGLSIP 349
K +LLGG K + F +L E +N H FG G L+ K S
Sbjct: 336 IEGKLHLLLGGDGKGAD------FSELAELINQPHIICYCFGRDGALLAK------FSSQ 383
Query: 350 CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
+ M+ A+ R +GD ++LSP CAS D+F +FE RG F LA
Sbjct: 384 SYLFDTMEQAIEFLRPTLQSGDMVLLSPACASLDQFASFEKRGEEFTHLA 433
>gi|313891490|ref|ZP_07825103.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
microaerophilus UPII 345-E]
gi|313120067|gb|EFR43246.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
microaerophilus UPII 345-E]
Length = 449
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 129/384 (33%), Positives = 198/384 (51%), Gaps = 37/384 (9%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++ A + SI LAVTGTNGK+T +G ML + G + V GNLG LS+ A
Sbjct: 91 VISEIELAFCITKASI--LAVTGTNGKTTTTKLLGLMLKNSGKKFAVAGNLGVSLSDKA- 147
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
L K + EVSS+Q+E K F P + +LN+TPDHLERH TM+ Y K
Sbjct: 148 ---DLIDEKS---IIAAEVSSFQLEFI-KNFKPKAAAILNITPDHLERHHTMEAYVQAKA 200
Query: 148 HLFSHMVNTKLGLLPFGNQHLNE----AIKGHRFNLAWI------GAFPGVKIDTEAKTA 197
+F +M LL +++ NE A K L I GAF +D E
Sbjct: 201 RIFENMNFENCILLNADDKYTNELTEMANKHTNVCLFSIQKNIDNGAF----LDGEELVI 256
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
S++ + + + ++ +++ G+ NY NA A S L G+ +EA+ + ++ + PH
Sbjct: 257 SYKGNKINICN---INELQIKGKQNYANALAA--SFLAFFSGISLEAIRAALKEFKGLPH 311
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R++ V R + + + +DSKATN +A+ G M+ +++ GG K + E +K+
Sbjct: 312 RIEFV-RKFKDINYYNDSKATNTDASIKG-MEAFDKPVILIAGGHDKGIPLSEY--MKKV 367
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
E H + +I G + K +N G+S A +M+DAV A + A GD I+LSP
Sbjct: 368 KE---HTKELILIGEATERFEKVAINEGVSNITRA-KDMEDAVYKATKFAEAGDIIILSP 423
Query: 378 GCASFDEFRNFEHRGMVFQELAFS 401
C+SFD ++N RG F+ + S
Sbjct: 424 ACSSFDMYKNMAERGNDFKRIVNS 447
>gi|410637810|ref|ZP_11348380.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Glaciecola
lipolytica E3]
gi|410142496|dbj|GAC15585.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Glaciecola
lipolytica E3]
Length = 434
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 113/386 (29%), Positives = 185/386 (47%), Gaps = 53/386 (13%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+++G V+ +++ A+ I ++A+TG+NGKSTV V +MLN G +A +GGN+G P
Sbjct: 83 IEAGVEVIGDVELFARF--NQIPVIAITGSNGKSTVTCLVNEMLNCAGFKAQMGGNIGTP 140
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ L K + V+E+SS+Q+E + P + +LN++ DHL+RH+T
Sbjct: 141 V---------LDLLKSDAEYLVLELSSFQLERL-QSLTPVCATILNVSEDHLDRHRTFSA 190
Query: 142 YALTKCHLF---SHMVNTKLGLLPFGNQHLNE---AIKGHRFNLAWIGAFPGVKIDTEAK 195
YA K ++ + + + + + +++ + + ++W A + +D EA
Sbjct: 191 YADAKKRIYHNAKYAIANRDDVKTWPHEYQPQYSFGLSNSPLGISWNDASREILVDGEAY 250
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
+ H + G HN N A V L GV EA+ + +
Sbjct: 251 VSE--------------HQCALKGLHNVLNIQAAIGCVRPL--GVGAEAITQAVGQFKGL 294
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGGQAKVLNGQESN 312
HR +++ Q V W++DSKATN+ AT L LK K V++ GG K + E
Sbjct: 295 AHRFELISEHNQ-VRWINDSKATNVGATIAALQSLKNRDSGKLVLIAGGDGKNADFTE-- 351
Query: 313 GFEKLIEP--LNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 370
++P LN +IT G G I L V ++ +AVN A + +G
Sbjct: 352 -----LQPVLLNDVDLLITLGKDGREIAS------LKPGSIEVKDLNEAVNFANSIVESG 400
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVFQ 396
D ++LSP CAS D F N++HRG VF+
Sbjct: 401 DIVLLSPACASLDMFDNYQHRGDVFR 426
>gi|408483717|ref|ZP_11189936.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
sp. R81]
Length = 448
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 116/362 (32%), Positives = 180/362 (49%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E + V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTHD-LGAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGAKQVVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E + F L AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLMGEGLPCWTFGLGKPDFKAF-GIREENGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S + HR Q V RD+ GV++ +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSALRTFGGLEHRCQWV-RDLDGVSYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D++G K V++ GG K + F+ L P+ H R V+ G
Sbjct: 329 NVGAALAAIEGLGADIEG-KLVLIAGGDGKGAD------FKDLKGPVAEHCRAVVLMGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
LI L G ++P ++ DA+ + +A GDA++LSP CASFD F+N+E RG
Sbjct: 382 SDLIAAAL---GDAVPQVRATSLDDAIAQCKALAQPGDAVLLSPACASFDMFKNYEERGQ 438
Query: 394 VF 395
+F
Sbjct: 439 LF 440
>gi|421554230|ref|ZP_16000178.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 98008]
gi|402333500|gb|EJU68803.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 98008]
Length = 445
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 187/383 (48%), Gaps = 43/383 (11%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGAP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
T + G + ++ + G HN N AAVA +GL EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGL----PREALLEHVKTFQ 305
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
PHR++ + + GV ++DDSK TN+ AT + L+ + ++LGG K GQ+
Sbjct: 306 GLPHRVEKIGKK-NGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGK---GQD--- 357
Query: 314 FEKLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 372
F L + L + V G I + L +G + A +++AV A A GD
Sbjct: 358 FTPLRDALAGKAKGVFLIGVDAPQIRRDL--DGCDLNMTDCATLEEAVQKAYAQAEAGDI 415
Query: 373 IVLSPGCASFDEFRNFEHRGMVF 395
++LSP CASFD F+ + HR VF
Sbjct: 416 VLLSPACASFDMFKGYAHRSEVF 438
>gi|118497141|ref|YP_898191.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
novicida U112]
gi|194323439|ref|ZP_03057216.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
novicida FTE]
gi|254373970|ref|ZP_04989452.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
novicida GA99-3548]
gi|385792464|ref|YP_005825440.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|158512419|sp|A0Q5C2.1|MURD_FRATN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|118423047|gb|ABK89437.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
novicida U112]
gi|151571690|gb|EDN37344.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
novicida GA99-3548]
gi|194322294|gb|EDX19775.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
tularensis subsp. novicida FTE]
gi|328676610|gb|AEB27480.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella cf.
novicida Fx1]
Length = 417
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 118/379 (31%), Positives = 181/379 (47%), Gaps = 56/379 (14%)
Query: 27 RVMSELDFAAQVIPRS-IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85
+++S++D Q I + K +AVTG+NGKSTVVT +L LG ++ + GN+G P
Sbjct: 80 KIVSDIDIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVGNIGTP---- 135
Query: 86 AFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSV--VLNLTPDHLERHKTMKNYA 143
AL KF VVEVSS+Q+++ N C + ++N++PDHL+R++ + Y
Sbjct: 136 -----ALNKIGEKFDYCVVEVSSFQIDLFN---CVRFDLGCIINVSPDHLDRYQNFEQYK 187
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203
+KL L F N + H + + G + ++ +
Sbjct: 188 -----------QSKLNLAKFSNDFFVYDV--HNNGIKYAGEYQIIRGAIYRNSTKL---- 230
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVA--ALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
L + K+ G HN N V L LGLDI +A++S I+ + HR +I
Sbjct: 231 ------LDIAETKLFGEHNLENIIVVLNILDRLGLDIN---QAIDS-IKKFKGLEHRCKI 280
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL-GGQAKVLNGQESNGFEKLIEP 320
V + + G T+++DSK TN+ AT L + K +ILL GG AK F +I+
Sbjct: 281 VKK-VNGTTYINDSKGTNVGATIAALNSITNSKNIILLLGGVAK------GGDFSLMIKS 333
Query: 321 LNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 379
L+ + + V +G I + C NMK A A + A + + ++LSP C
Sbjct: 334 LDKYVKYVYIYGADKEYIESYIKGYCKYQLC---NNMKQAFELASQKANSNEIVLLSPAC 390
Query: 380 ASFDEFRNFEHRGMVFQEL 398
ASFDEF + RG VFQ L
Sbjct: 391 ASFDEFSGYAQRGEVFQNL 409
>gi|421566847|ref|ZP_16012588.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis NM3001]
gi|402344790|gb|EJU79923.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis NM3001]
Length = 445
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 187/383 (48%), Gaps = 43/383 (11%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNADDAFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
T + G + ++ + G HN N AAVA +GL EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGL----PREALLEHVKTFQ 305
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
PHR++ + + GV ++DDSK TN+ AT + L+ + ++LGG K GQ+
Sbjct: 306 GLPHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGK---GQD--- 357
Query: 314 FEKLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 372
F L + L + V G I + L +G + A +++AV A A GD
Sbjct: 358 FTPLRDALAGKAKGVFLIGVDAPQIRRDL--DGCDLNMTDCATLEEAVQKAYAQAEAGDI 415
Query: 373 IVLSPGCASFDEFRNFEHRGMVF 395
++LSP CASFD F+ + HR VF
Sbjct: 416 VLLSPACASFDMFKGYAHRSEVF 438
>gi|388470745|ref|ZP_10144954.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pseudomonas
synxantha BG33R]
gi|388007442|gb|EIK68708.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pseudomonas
synxantha BG33R]
Length = 448
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 117/362 (32%), Positives = 179/362 (49%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGVP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E + V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTHD-LGAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTE--AKTASFEVPAVGVVSQLQLHNMKVM 218
+ E + F L F G I E K +FE + + + +K+
Sbjct: 221 ---SRPLMGEGMPCWTFGLGKPD-FKGFGIREENGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ +++ HR Q V RD+ GV++ +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLASLRTFAGLEHRCQWV-RDLNGVSYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D+ G K V++ GG K + F+ L P+ H R V+ G
Sbjct: 329 NVGAALAAIEGLGADIDG-KLVLIAGGDGKGAD------FKDLANPVAAHCRAVVLMGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
LI L G ++P ++ DA+ H + +A GDA++LSP CASFD F+N+E RG
Sbjct: 382 SDLIAAAL---GDAVPQVRATSLDDAIAHCKALAQPGDAVLLSPACASFDMFKNYEERGQ 438
Query: 394 VF 395
+F
Sbjct: 439 LF 440
>gi|254372509|ref|ZP_04987998.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
tularensis subsp. novicida GA99-3549]
gi|151570236|gb|EDN35890.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
novicida GA99-3549]
Length = 417
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 118/379 (31%), Positives = 181/379 (47%), Gaps = 56/379 (14%)
Query: 27 RVMSELDFAAQVIPRS-IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85
+++S++D Q I + K +AVTG+NGKSTVVT +L LG ++ + GN+G P
Sbjct: 80 KIVSDIDIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVGNIGTP---- 135
Query: 86 AFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSV--VLNLTPDHLERHKTMKNYA 143
AL KF VVEVSS+Q+++ N C + ++N++PDHL+R++ + Y
Sbjct: 136 -----ALNKIGEKFDYCVVEVSSFQIDLFN---CVRFDLGCIINVSPDHLDRYQNFEQYK 187
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203
+KL L F N + H + + G + ++ +
Sbjct: 188 -----------QSKLNLAKFSNDFFVYDV--HNNGIKYAGEYQIIRGAIYRNSTKL---- 230
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVA--ALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
L + K+ G HN N V L LGLDI +A++S I+ + HR +I
Sbjct: 231 ------LDIAETKLFGEHNLENIIVVLNILDRLGLDIN---QAIDS-IKKFKGLEHRCKI 280
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL-GGQAKVLNGQESNGFEKLIEP 320
V + + G T+++DSK TN+ AT L + K +ILL GG AK F +I+
Sbjct: 281 VKK-VNGTTYINDSKGTNVGATIAALNSITNSKNIILLLGGVAK------GGDFSLMIKS 333
Query: 321 LNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 379
L+ + + V +G I + C NMK A A + A + + ++LSP C
Sbjct: 334 LDKYVKYVYIYGADKEYIESYIKGYCKYQLC---NNMKQAFELASQKANSNEIVLLSPAC 390
Query: 380 ASFDEFRNFEHRGMVFQEL 398
ASFDEF + RG VFQ L
Sbjct: 391 ASFDEFSGYAQRGEVFQNL 409
>gi|416159697|ref|ZP_11605961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis N1568]
gi|433472801|ref|ZP_20430170.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 97021]
gi|433481236|ref|ZP_20438505.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 2006087]
gi|433483317|ref|ZP_20440553.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 2002038]
gi|433485450|ref|ZP_20442655.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 97014]
gi|325128836|gb|EGC51695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis N1568]
gi|432212240|gb|ELK68182.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 97021]
gi|432218534|gb|ELK74391.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 2006087]
gi|432222687|gb|ELK78474.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 2002038]
gi|432224362|gb|ELK80128.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 97014]
Length = 445
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 187/383 (48%), Gaps = 43/383 (11%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
T + G + ++ + G HN N AAVA +GL EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGL----PREALLEHVKTFQ 305
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
PHR++ + + GV ++DDSK TN+ AT + L+ + ++LGG K GQ+
Sbjct: 306 GLPHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGK---GQD--- 357
Query: 314 FEKLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 372
F L + L + V G I + L +G + A +++AV A A GD
Sbjct: 358 FTPLRDALAGKAKGVFLIGVDAPQIRRDL--DGCDLNMTDCATLEEAVQKAYAQAEAGDI 415
Query: 373 IVLSPGCASFDEFRNFEHRGMVF 395
++LSP CASFD F+ + HR VF
Sbjct: 416 VLLSPACASFDMFKGYAHRSEVF 438
>gi|224024607|ref|ZP_03642973.1| hypothetical protein BACCOPRO_01334 [Bacteroides coprophilus DSM
18228]
gi|224017829|gb|EEF75841.1| hypothetical protein BACCOPRO_01334 [Bacteroides coprophilus DSM
18228]
Length = 444
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 114/392 (29%), Positives = 197/392 (50%), Gaps = 50/392 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 83 LKEQGTPIISEIEFAGRYT--QAKMICITGSNGKTTTTSLIYHIFKKAGLNVGLAGNIGQ 140
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERH-KT 138
L A +K + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 141 SL--------AFQVAKCNYDYYVIELSSFQLD--NMYKFHANIAVLMNITPDHLDRYGYQ 190
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + + P + L++ I GH + A G+ E
Sbjct: 191 MQNYVDAKFRIIQNQTDADAFIFWNDDPVIQRELHKYGIHGHYYPFAEKRE-EGLAAFVE 249
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI-GVDVEALNSTIEIL 252
F P + ++ + + G HN N+ A +S +I G+ E + +
Sbjct: 250 ENKVYFTEP---IAFNMEQEELALTGTHNLFNSMAAGISA---NIAGIRKECIREALNDF 303
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
+ HR++ V R ++GV +++DSKATN+ + L +K K V++LGG+ K G + N
Sbjct: 304 KGVEHRLEKVCR-VRGVEYINDSKATNVNSCWYALQSMKT-KTVLILGGKDK---GNDYN 358
Query: 313 GFEKLIEPLNHHRCVITFGYSGVLIWKTLVN-------NGLSIPCFAVANMKDAVNHARR 365
L+ +C SG LI+ L N +G +P V +MKDAV+ A +
Sbjct: 359 EIADLV----REKC------SG-LIFMGLHNEKLHDFFDGFGLPIVDVQSMKDAVDAAYQ 407
Query: 366 MATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
MA G+ ++LSP CASFD F+++E RG F++
Sbjct: 408 MAKKGETVLLSPCCASFDLFKSYEDRGDQFKK 439
>gi|162449933|ref|YP_001612300.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sorangium
cellulosum So ce56]
gi|161160515|emb|CAN91820.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Sorangium
cellulosum So ce56]
Length = 456
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 113/380 (29%), Positives = 180/380 (47%), Gaps = 30/380 (7%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L + +SG+ V+ EL+ A++ + S ++ V GTNGKST G ML G+ FVGGN
Sbjct: 85 LDAVARSGREVIGELELASRFV--SAPVVLVGGTNGKSTTTALTGAMLERAGLRTFVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERH 136
G PL+E + V V+E+SS+Q E +P + +LN+T DHL+R+
Sbjct: 143 FGTPLAEVVDQT---------WDVLVLEISSFQAERVPTLH--ARAHALLNITDDHLDRY 191
Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT 196
+ YA K + F M + ++PFG++ + R + A + D A
Sbjct: 192 ASFAAYADAKGNPFERMTPDDVAVVPFGDELVARQAARGRARVVTFSARD-ARADVSAAG 250
Query: 197 ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
+ G ++ L +++ G HN NA +A +G A+ +
Sbjct: 251 GAIVDRVTG--ARYPLDRVRLAGAHNLANACASAALA--AALGAPAAAIGDALSSFEGLA 306
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK 316
HR +V D+ GV + DDSK TN+ A+ L L K V++ GG+ K+ + +
Sbjct: 307 HRTALVA-DVDGVRYYDDSKGTNVGASVAALSGLLEAKAVLIAGGRDKLGD------YAP 359
Query: 317 LIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
L+ L R ++ G + I +P +M +AV AR +A GDA++L
Sbjct: 360 LVSALRERGRALVVLGEAADRIAAAAAG---VLPIARAGSMAEAVLAARSLARPGDAVLL 416
Query: 376 SPGCASFDEFRNFEHRGMVF 395
SP C+SFD FR+++ RG F
Sbjct: 417 SPACSSFDMFRDYKDRGDAF 436
>gi|114330275|ref|YP_746497.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nitrosomonas
eutropha C91]
gi|122314675|sp|Q0AJD9.1|MURD_NITEC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|114307289|gb|ABI58532.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosomonas
eutropha C91]
Length = 470
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 121/381 (31%), Positives = 192/381 (50%), Gaps = 24/381 (6%)
Query: 22 LQSGKRVMSELDFAA----QVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
LQ G V+ +++ A Q P KILA+TG+NGK+TV T VG+M + G + V GN
Sbjct: 88 LQQGVSVIGDIELFAIALDQHAPPGTKILAITGSNGKTTVATMVGEMARNTGWDVEVAGN 147
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G +A I + + V+E+SS+Q+E + P +VVLNL+ DHL+R++
Sbjct: 148 IGLAALDALMQRI---DTGKWPHLWVLELSSFQLETTSS-LRPNAAVVLNLSEDHLDRYR 203
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
++ YA K +F N+ + +L + + + L + + P + +
Sbjct: 204 IIEEYAAAKARIFPDPHNSCVQVLNREDARVYAMAHENSKQLTFGLSAPAFDDEFGVLPS 263
Query: 198 SFEV-PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
++ A G +++ + V G HN NA A +D+ E L + I + P
Sbjct: 264 GSDLWLAQGTTRLMKVSELAVAGLHNAANALAALALCRAIDL--PFEPLLHALHIFKGLP 321
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL-GGQAKVLNGQESNGFE 315
HRMQ + + GVT+ DDSK+TN+ + L + K VIL+ GG K GQ+ F
Sbjct: 322 HRMQKI-AEFNGVTFYDDSKSTNVGSAVAALNGFR--KNVILIAGGDGK---GQD---FS 372
Query: 316 KLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 374
L +P++ H R V+ G I + + G ++P VA M +AV + +A GD+++
Sbjct: 373 PLEQPVSKHTRGVVLLGRDAEKISQAI--QGCNVPVHRVATMDEAVRVSFLLAERGDSVL 430
Query: 375 LSPGCASFDEFRNFEHRGMVF 395
LSP CAS D F N+ HR VF
Sbjct: 431 LSPACASLDMFNNYIHRAEVF 451
>gi|421560583|ref|ZP_16006440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis NM2657]
gi|254671173|emb|CBA08279.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis alpha153]
gi|402339930|gb|EJU75136.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis NM2657]
Length = 445
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 187/383 (48%), Gaps = 43/383 (11%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNADDAFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
T + G + ++ + G HN N AAVA +GL EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGL----PREALLEHVKTFQ 305
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
PHR++ + + GV ++DDSK TN+ AT + L+ + ++LGG K GQ+
Sbjct: 306 GLPHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGK---GQD--- 357
Query: 314 FEKLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 372
F L + L + V G I + L +G + A +++AV A A GD
Sbjct: 358 FTPLRDALAGKAKGVFLIGVDAPQIRRDL--DGCDLNMTDCATLEEAVQTAYAQAEAGDI 415
Query: 373 IVLSPGCASFDEFRNFEHRGMVF 395
++LSP CASFD F+ + HR VF
Sbjct: 416 VLLSPACASFDMFKGYAHRSEVF 438
>gi|145641278|ref|ZP_01796858.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae R3021]
gi|145274115|gb|EDK13981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae 22.4-21]
Length = 437
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 194/410 (47%), Gaps = 53/410 (12%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA L++G V+ +++ + + I + +TG+NGKSTV
Sbjct: 62 WLLESDMIVISPGLAVKTLEIQTALKAGVEVIGDIELFCRAATKPI--VGITGSNGKSTV 119
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G++ +GGN+G P AL ++ V+E+SS+Q+E
Sbjct: 120 TTLVYEMAKAAGVKVGMGGNIGIP---------ALSLLNEDCELYVLELSSFQLETTYS- 169
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL------PFGNQHLNEA 171
+ VLN+T DH++R+ +++Y K ++ N K+G+L FG NE
Sbjct: 170 LKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYH---NAKVGVLNNEDRLTFGE---NEN 223
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
H + A A +K + + + + L ++GRHNY N + A
Sbjct: 224 QAKHTVSFAENSADYWLKTENGKQYLMVKDEVI-----LPCEEATLVGRHNYMN--ILAA 276
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L IG++++++ + + + HR Q+ H+ G+ W++DSKATN+ +T L L
Sbjct: 277 TALAQAIGINLDSIRTALRHFKGLDHRFQLAHQ-ANGIRWINDSKATNVGSTVAALAGLY 335
Query: 292 GH-KCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFGYSGVLIWKTLVNNGLSIP 349
K +LLGG K + F +L E +N H FG G L+ K S
Sbjct: 336 IEGKLHLLLGGDGKGAD------FSELAELINQPHIICYCFGRDGALLAK------FSSQ 383
Query: 350 CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
+ M+ A+ R +GD ++LSP CAS D+F +FE RG F LA
Sbjct: 384 SYLFETMEQAIEFLRPTLQSGDMVLLSPACASLDQFASFEKRGEEFTHLA 433
>gi|118602749|ref|YP_903964.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
gi|118567688|gb|ABL02493.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
Length = 433
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 117/362 (32%), Positives = 187/362 (51%), Gaps = 38/362 (10%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+ +TG+NGKSTV + QM+ + G++ +GGN+G P+ C+ K + V+
Sbjct: 103 IIGITGSNGKSTVTQLLTQMIINAGMQVAMGGNIGTPV----LDCL-----NEKIEYYVL 153
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SSYQ++ + + V VVLN+TPDHL+R++ K+Y +K L+ H + +
Sbjct: 154 ELSSYQLDYSH-HLNLIVGVVLNITPDHLDRYQNFKHYINSKLSLYQHCQHLVI------ 206
Query: 165 NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV--GVVSQLQLHNMKVMGRHN 222
+L+E + + N G + D + + G + ++ ++++G HN
Sbjct: 207 --NLDEPLTPPKVNAKCFGISIPKQADDFGTVTCHDTYYLLKGDNVLMSINEVQLIGEHN 264
Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
N +AAL+ LG I + + ++ +I+ + HR++ V + Q + + +DSKATN +
Sbjct: 265 TRNI-LAALA-LGDQIRLPIISMIQSIKNFKGLEHRLEWVAKK-QNIDYYNDSKATNAIS 321
Query: 283 TCTGLMDL--KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWK 339
T T + L K V++LGG AK QE+ + L + +N VI G S +
Sbjct: 322 TITAIQALMRKHQNIVLILGGIAK----QEN--YTPLFKLINKSITSVILIGQSAQQFEQ 375
Query: 340 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
+ N MKDAVN A M NG I+LSPGCASFD F +FEHRG F+E
Sbjct: 376 EINTN-----TSHAKTMKDAVNVAHSMINNG-TILLSPGCASFDMFDDFEHRGRAFKECV 429
Query: 400 FS 401
FS
Sbjct: 430 FS 431
>gi|431807280|ref|YP_007234178.1| hypothetical protein BPP43_03085 [Brachyspira pilosicoli P43/6/78]
gi|430780639|gb|AGA65923.1| hypothetical protein BPP43_03085 [Brachyspira pilosicoli P43/6/78]
Length = 465
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 107/379 (28%), Positives = 199/379 (52%), Gaps = 33/379 (8%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
+V+ E++FA +IP ++VTGT+GK+T V + +++ +A + GN+GN S+
Sbjct: 110 KVIGEIEFAYNLIPDR-NYISVTGTDGKTTTVNLIYSIISSYK-KARLLGNVGNTFSKEV 167
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
S K + V+E+SS+Q+E + F +SV+LN+ DHL+R+K +++Y K
Sbjct: 168 -------ESIEKDEDIVLELSSFQLETIDN-FHSHISVILNIAEDHLDRYKDIEDYFNAK 219
Query: 147 CHLFSHMVNTKLGLLPFGN----QHLNEAIKGH--RFN-LAWIGAFPGVKIDTEAKTASF 199
++ + + +L + N ++ NE IK FN L + + + +K F
Sbjct: 220 KNITKNQNSNDFLILNYDNFYTNRYYNELIKTKDISFNVLIFSTKYREANLYYNSKDECF 279
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ S + K++G HN N + L+ + +I + E ++ + ++ HR+
Sbjct: 280 YYNGEKIFS---IAKRKLLGMHNIENILASVLACIKDNIPI--EYIDKAVNNFKSIEHRL 334
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319
+ V ++I GV +++DSKAT++ A + L + ++++GG+ K G + + +IE
Sbjct: 335 EFV-KEIDGVRYINDSKATSMSAVMSALKSFDKN-IILIMGGRNK---GIDFKPLKSIIE 389
Query: 320 PLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 379
+ ++T S L V+N + I F +A ++A+++A GD ++LSPGC
Sbjct: 390 E-RVKKLILTGEASEDLSSMIDVSNKIIIKDFT-----EAFDYAKKIAVKGDTVLLSPGC 443
Query: 380 ASFDEFRNFEHRGMVFQEL 398
ASFD F+N+E RG F+ L
Sbjct: 444 ASFDSFKNYEERGKYFKSL 462
>gi|402830123|ref|ZP_10878828.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. CM59]
gi|402286180|gb|EJU34656.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. CM59]
Length = 445
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 106/379 (27%), Positives = 198/379 (52%), Gaps = 31/379 (8%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++SE++FA++ + KI+A+TG+NGK+T + + +L G+ VGGN+GN +
Sbjct: 85 GIEIISEIEFASRYT--NAKIIAITGSNGKTTTTSLIYHLLEQAGLSVGVGGNIGNSFA- 141
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYA 143
+ + +PK + V+E+SS+Q++ F P ++++LN+TPDHL+R+ +NY
Sbjct: 142 ------YMVAKEPK-EYYVLEISSFQLDDITS-FRPHIALLLNITPDHLDRYNYEFQNYI 193
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEA----KTASF 199
K + ++ + + L E + R A + F K +T+ +
Sbjct: 194 DAKFRITAYQEANDYLIYDADDPVLQEELAKRRDIKAQLLPFSLEKANTQGAYCLDEKNI 253
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ + ++ ++ + G+HN NA A + L+I E++ +++ + PHR+
Sbjct: 254 HINFNQNLLEMSTKDLTIKGKHNLKNAMGATMVAKMLNI--RNESIRNSLMTFQGVPHRL 311
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319
+ V R+++GV +++DSKATN+ + L ++ + V ++GGQ K N + LI
Sbjct: 312 EFV-REVEGVKYINDSKATNVNSVYYALDSMEDN-LVWIVGGQDK------GNDYNPLIP 363
Query: 320 PLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCF-AVANMKDAVNHARRMATNGDAIVLSP 377
++ + ++ G I +T + IP +M+DAV R +A GD ++LSP
Sbjct: 364 YVSKKVKAIVCLGLDNQKIIQTFQS---IIPTIIETHSMEDAVQVGRGLAQEGDTVLLSP 420
Query: 378 GCASFDEFRNFEHRGMVFQ 396
CASFD F+++E RG F+
Sbjct: 421 ACASFDLFQSYEDRGNQFK 439
>gi|416176664|ref|ZP_11609775.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis M6190]
gi|416190533|ref|ZP_11615782.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis ES14902]
gi|433491920|ref|ZP_20449020.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis NM586]
gi|325132966|gb|EGC55643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis M6190]
gi|325138954|gb|EGC61504.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis ES14902]
gi|432230321|gb|ELK85998.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis NM586]
Length = 445
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 186/383 (48%), Gaps = 43/383 (11%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNADDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
T + G + ++ + G HN N AAVA +GL EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGL----PREALLEHVKTFQ 305
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
PHR++ + GV ++DDSK TN+ AT + L+ + ++LGG K GQ+
Sbjct: 306 GLPHRVEKIGEK-NGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGK---GQD--- 357
Query: 314 FEKLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 372
F L + L + V G I + L +G + A +++AV A A GD
Sbjct: 358 FTPLRDALVGKAKGVFLIGVDAPQIRRDL--DGCDLNMTDCATLEEAVQTAYAQAEAGDI 415
Query: 373 IVLSPGCASFDEFRNFEHRGMVF 395
++LSP CASFD F+ + HR VF
Sbjct: 416 VLLSPACASFDMFKGYAHRSEVF 438
>gi|345874734|ref|ZP_08826534.1| hypothetical protein l11_06150 [Neisseria weaveri LMG 5135]
gi|343970093|gb|EGV38291.1| hypothetical protein l11_06150 [Neisseria weaveri LMG 5135]
Length = 445
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 120/383 (31%), Positives = 188/383 (49%), Gaps = 30/383 (7%)
Query: 23 QSGKRVMSELDFAA-QVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
QSG V+ +++ A ++ +S KI+A+TG+NGK+TV + VG + G++ V GN+G P
Sbjct: 89 QSGGVVLGDVEILAHELKGKSDKIIAITGSNGKTTVTSLVGYLCEKCGLDTVVAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA V V+E+SS+Q+E + + +VVLN++ DHL+R+ + +
Sbjct: 149 VLEAYMQ-----RGGKAADVWVLELSSFQLENTD-HLAADAAVVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
YA K +F L + + A+K ++ W T+ +T +
Sbjct: 203 YAHAKDKIFRGSGVQVLN----ADDAMCRAMKRPNRDIKWFSLEGQADYWTDVQTGRLKA 258
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G L + + G HN N A +G+ L I+ + PHR++
Sbjct: 259 ---GANDLLDTAAIPLQGLHNAANVLAALALCEA--VGLPRTELLQHIQTFKGLPHRVEK 313
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V G+T++DDSK TN+ AT + L+ V++ GGQ K GQ+ F L L
Sbjct: 314 VGEK-NGITFIDDSKGTNVGATAAAIAGLQ-SPLVLIAGGQGK---GQD---FTPLRAAL 365
Query: 322 -NHHRCVITFGYSGVLIWKTLVNNGLS-IPCFAVANMKDAVNHARRMATNGDAIVLSPGC 379
N R V+ G LI + L G+ I C A +++AV A ++A +GD ++LSP C
Sbjct: 366 HNKARAVLLIGEDAPLIRRDLAGCGVDLIDC---ATLEEAVQTAYKLAQSGDIVLLSPAC 422
Query: 380 ASFDEFRNFEHRGMVFQELAFSA 402
ASFD F + HR VF E AF A
Sbjct: 423 ASFDMFEGYAHRAQVFVE-AFEA 444
>gi|145630236|ref|ZP_01786018.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae R3021]
gi|144984517|gb|EDJ91940.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae R3021]
Length = 437
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 194/410 (47%), Gaps = 53/410 (12%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA L++G V+ +++ + + I + +TG+NGKSTV
Sbjct: 62 WLLESDMIVISPGLAVKTPEIQTALKAGVEVIGDIELFCRAATKPI--VGITGSNGKSTV 119
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G++ +GGN+G P AL ++ V+E+SS+Q+E
Sbjct: 120 TTLVYEMAKAAGVKVGMGGNIGIP---------ALSLLNEDCELYVLELSSFQLETTYS- 169
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL------PFGNQHLNEA 171
+ VLN+T DH++R+ +++Y K ++ N K+G+L FG NE
Sbjct: 170 LKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYH---NAKVGVLNNEDRLTFGE---NEN 223
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
H + A A +K + + + + L ++GRHNY N + A
Sbjct: 224 QAKHTVSFAENSADYWLKTENGKQYLMVKDEVI-----LPCEEATLVGRHNYMN--ILAA 276
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L IG++++++ + + + HR Q+ H+ G+ W++DSKATN+ +T L L
Sbjct: 277 TALAQAIGINLDSIRTALRHFKGLDHRFQLAHQ-ANGIRWINDSKATNVGSTVAALAGLY 335
Query: 292 GH-KCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFGYSGVLIWKTLVNNGLSIP 349
K +LLGG K + F +L E +N H FG G L+ K S
Sbjct: 336 IEGKLHLLLGGDGKGAD------FSELAELINQPHIICYCFGRDGALLAK------FSSQ 383
Query: 350 CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
+ M+ A+ R +GD ++LSP CAS D+F +FE RG F LA
Sbjct: 384 SYLFETMEQAIEFLRPTLQSGDMVLLSPACASLDQFASFEKRGEEFTHLA 433
>gi|145627896|ref|ZP_01783697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae 22.1-21]
gi|145639344|ref|ZP_01794950.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae PittII]
gi|144979671|gb|EDJ89330.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae 22.1-21]
gi|145271647|gb|EDK11558.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae PittII]
gi|309751218|gb|ADO81202.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
influenzae R2866]
Length = 437
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 119/410 (29%), Positives = 195/410 (47%), Gaps = 53/410 (12%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA L++G V+ +++ + + I + +TG+NGKSTV
Sbjct: 62 WLLESDMIVISPGLAVKTPEIQTALKAGVEVIGDIELFCRTATKPI--VGITGSNGKSTV 119
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G++ +GGN+G P AL ++ V+E+SS+Q+E
Sbjct: 120 TTLVYEMAKAAGVKVGMGGNIGIP---------ALSLLNEDCELYVLELSSFQLETTYSL 170
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL------PFGNQHLNEA 171
V+V LN+T DH++R+ +++Y K ++ N K+G+L FG NE
Sbjct: 171 KAAAVTV-LNVTEDHMDRYMDLEDYRQAKLRIYH---NAKVGVLNNEDRLTFGE---NEN 223
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
H + A A +K + + + + L ++GRHNY N + A
Sbjct: 224 QAKHTVSFAENSADYWLKTENGKQYLMVKDEVI-----LPCEEATLVGRHNYMN--ILAA 276
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L IG++++++ + + + HR Q+VH+ G+ W++DSKATN+ +T L L
Sbjct: 277 TALAQAIGINLDSIRTALRHFKGLDHRFQLVHQ-ANGIRWINDSKATNVGSTVAALAGLY 335
Query: 292 GH-KCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFGYSGVLIWKTLVNNGLSIP 349
K +LLGG K + F +L E +N H FG G + K S
Sbjct: 336 IEGKLHLLLGGDGKGAD------FSELAELINQPHIICYCFGRDGAQLAK------FSSQ 383
Query: 350 CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
+ M+ A+ R +GD ++LSP CAS D+F +FE RG F LA
Sbjct: 384 SYLFETMEQAIEFLRPTLQSGDMVLLSPACASLDQFASFEKRGEEFTHLA 433
>gi|291459276|ref|ZP_06598666.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
sp. oral taxon 078 str. F0262]
gi|291418530|gb|EFE92249.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
sp. oral taxon 078 str. F0262]
Length = 452
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 111/376 (29%), Positives = 181/376 (48%), Gaps = 28/376 (7%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
+ EL+ A Q K+ A+TGTNGK+T V+ VG++L + V GN+GNP + A
Sbjct: 94 IWGELELAYQ--SSRGKLAAITGTNGKTTTVSLVGEILRSHFSDTHVVGNIGNPFTAEAL 151
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
V+EVSS+Q+E F P VS + N+TPDHL+RHK+MKNY K
Sbjct: 152 ET-------EDSSATVIEVSSFQLETIMD-FRPDVSAITNITPDHLDRHKSMKNYIRIKE 203
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRF--NLAWIGAFPGVKIDTEAKTASFEVPAVG 205
+ + +L + L KG + W + +K + + G
Sbjct: 204 SIAMNQTEEDCVVLNHEDPELRSFGKGKELKPKVLWFSSERELKEGFFLRKDALFFREAG 263
Query: 206 VVSQ--LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
++ L++ +K++G+HNY N A + +GV + + S + R HR++ V
Sbjct: 264 KEAEELLKVRELKLLGKHNYENVMCAM--AVSYRMGVPMRKIISVCKSFRPVEHRIEFV- 320
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN-GFEKLIEPLN 322
R GV++ +DSK TN++A L + G VIL+GG G + + F+ ++
Sbjct: 321 RKRSGVSYYNDSKGTNVDAAIQALRAMPGP--VILIGG------GYDKHVDFDDWVKEFK 372
Query: 323 HH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G + I G FA +M +AV A +GD ++LSP CAS
Sbjct: 373 GRVKYLVLIGQTRSQIANCAKKYGFKNIMFA-EDMDEAVRDCAAYADSGDFVLLSPACAS 431
Query: 382 FDEFRNFEHRGMVFQE 397
+ F+++E RG +F++
Sbjct: 432 WGMFKDYEERGQIFKD 447
>gi|423690027|ref|ZP_17664547.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pseudomonas
fluorescens SS101]
gi|388001307|gb|EIK62636.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pseudomonas
fluorescens SS101]
Length = 448
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 117/362 (32%), Positives = 179/362 (49%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGVP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E + V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTHD-LGAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTE--AKTASFEVPAVGVVSQLQLHNMKVM 218
+ E + F L F G I E K +FE + + + +K+
Sbjct: 221 ---SRPLMGEGMPCWTFGLGKPD-FKGFGIREENGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ +++ HR Q V RD+ GV++ +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLASLRTFAGLEHRCQWV-RDLNGVSYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D+ G K V++ GG K + F+ L P+ H R V+ G
Sbjct: 329 NVGAALAAIEGLGADIDG-KLVLIAGGDGKGAD------FKDLKAPVAAHCRAVVLMGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
LI L G ++P A++ DA+ + +A GDA++LSP CASFD F+N+E RG
Sbjct: 382 SDLIAAAL---GDAVPQVRAASLDDAIAQCKALAQPGDAVLLSPACASFDMFKNYEERGQ 438
Query: 394 VF 395
+F
Sbjct: 439 LF 440
>gi|302344210|ref|YP_003808739.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfarculus
baarsii DSM 2075]
gi|301640823|gb|ADK86145.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfarculus
baarsii DSM 2075]
Length = 446
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 128/399 (32%), Positives = 192/399 (48%), Gaps = 57/399 (14%)
Query: 18 LACLLQSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG 76
+A ++G V+ E++ + + P ++ I TGTNGKSTV + + ML G+ AF GG
Sbjct: 82 VAAAARNGAEVIGEMELGFRFLRPPAVMI---TGTNGKSTVTSLIAAMLEAEGLRAFAGG 138
Query: 77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH 136
NLG PL C + ++ AV+EVSS+Q + P V V+LN+T DHL+R+
Sbjct: 139 NLGTPL------CAYVAGAQDD-DWAVLEVSSFQTDTAVS-LRPKVGVILNITDDHLDRY 190
Query: 137 KTMKNYALTKCHLFSHM--------------VNTKLGLLPFGNQHLNEAIKGHRFNLAWI 182
+ + YA +K L ++ V +LGL P + L A HR
Sbjct: 191 DSFEQYAQSKFRLLANQAEGDVAVLCADDPEVAARLGLAP-ASVWLYGAANDHR------ 243
Query: 183 GAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242
PG ++ E + + E+P ++ +L ++ G N N + A + GV
Sbjct: 244 ---PGGRL--ENQRLALELPGRRLI-KLDASRSRLWGGFNKLN--ILAAGLAAAACGVSA 295
Query: 243 EALNSTIEILRTPPHRMQIV-HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG 301
+A+ I+ + HR+ +V RD GV W DDSK TN+ A L L V+LLGG
Sbjct: 296 QAMQRAIDEFQPLGHRLALVAERD--GVAWYDDSKGTNVGAVQAALEAL-ARPAVLLLGG 352
Query: 302 QAKVLNGQESNGFEKLIEP--LNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDA 359
+ K +G L+ P R VI FG +G I + GL+ VA++ A
Sbjct: 353 RDK-------DGRFALLAPQLAAWARLVICFGEAGASIAGQI--EGLA-ERQVVADLPAA 402
Query: 360 VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
V A + A GD ++LSPGCASFD + + RG F+ L
Sbjct: 403 VTLAAQEAKPGDVVLLSPGCASFDAYAGYAMRGDHFRRL 441
>gi|227874381|ref|ZP_03992565.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
sinus F0268]
gi|227839789|gb|EEJ50235.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
sinus F0268]
Length = 456
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 115/389 (29%), Positives = 187/389 (48%), Gaps = 50/389 (12%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
++ E++ A Q K+ AVTGTNGK+T V+ +G++L + V GN+GNP + A
Sbjct: 94 IIGEIELAYQ--SSKGKLCAVTGTNGKTTTVSLIGEILKSEYSDTHVVGNIGNPFTAEAL 151
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
++ V EVSS+Q+E F P VS + N+TPDHL+RHKTMKNY K
Sbjct: 152 ETEEQSAT-------VCEVSSFQLETIVD-FHPNVSAITNITPDHLDRHKTMKNYIAVKE 203
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRF--NLAWIGAFPGVKIDTEAKTASF------ 199
+ + +L + + L + K + W + K DT+ K + F
Sbjct: 204 SIAENQEEEDSIVLNYMDPELRKFGKKRSLKPKVLWFSSEEEPK-DTKEKESLFLRGDTF 262
Query: 200 ----EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
E + + +H ++G+HNY N A +GL +GV ++ + + +
Sbjct: 263 YYKKEDKEEKLFTTKDVH---LLGKHNYENILCAV--GVGLKMGVPMDKIIKVCKKFKPV 317
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
HR++ V R+ GV + +DSK TN++A L + G V+L+GG G++
Sbjct: 318 EHRIEFV-RERSGVKYYNDSKGTNVDAAIQALRAMPGP--VVLIGG-----------GYD 363
Query: 316 KLI-------EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMAT 368
K + E + ++ G + I +T NG FA +M +AV A
Sbjct: 364 KHVDFDPWVKEFKGRVKYLVLIGETRNQIAETAKKNGFQNVMFA-EDMDEAVKDCAAYAD 422
Query: 369 NGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
GD ++LSP CAS+ F+++E RG +F++
Sbjct: 423 PGDYVLLSPACASWGMFKDYEERGRIFKD 451
>gi|357406920|ref|YP_004918844.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylomicrobium
alcaliphilum 20Z]
gi|351719585|emb|CCE25261.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylomicrobium
alcaliphilum 20Z]
Length = 458
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 114/366 (31%), Positives = 181/366 (49%), Gaps = 57/366 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T +G M G + VGGNLG P AL P ++ ++
Sbjct: 126 IVAITGSNGKSTVTTMLGAMAKEAGKKTAVGGNLGTP---------ALDLLAPDIELYIL 176
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E + + + VLN++PDHL+R+ + YA K +F + ++N L
Sbjct: 177 ELSSFQLE-RTEILNASAATVLNISPDHLDRYDNVAEYAREKQKIFRGTGAMVLNADDPL 235
Query: 161 LPFGNQHLNEAIKGHR-----------FNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ 209
+ ++ A+ G + F+LAW G G + +
Sbjct: 236 V------IDMAVPGRKISTFSINSEAEFHLAWDG-HKGYLMQNHKRL------------- 275
Query: 210 LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGV 269
+ L + + G HN A A LG IG+D +++ ++ + HRMQ V G+
Sbjct: 276 MMLDELPLEGLHNA--ANALAAIALGTAIGLDEQSMCKALKKFKGLEHRMQRVAVK-NGI 332
Query: 270 TWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVIT 329
TWV+DSKATN+ A C ++ + +++ GG AK G + N I+ + VI
Sbjct: 333 TWVNDSKATNIGA-CVAALEGYTRQVILIAGGDAK---GADMNELVPAIQ--RKAKSVIL 386
Query: 330 FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 389
G G LI + L NG S+P + N+ AV A +A GD ++LSP CAS D++++++
Sbjct: 387 MGKDGPLIEQAL--NG-SVPIYKAENVARAVKIAAEIADEGDTVLLSPACASLDQYKSYK 443
Query: 390 HRGMVF 395
RG F
Sbjct: 444 ERGEKF 449
>gi|150003965|ref|YP_001298709.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
vulgatus ATCC 8482]
gi|149932389|gb|ABR39087.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
vulgatus ATCC 8482]
Length = 444
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 112/391 (28%), Positives = 191/391 (48%), Gaps = 48/391 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G ++SE++FA + + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 83 LKSQGTPIISEIEFAGRYT--NAKMICITGSNGKTTTTSLIYHIFKKAGMNVGLAGNIGQ 140
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L+ C + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 141 SLAYQVAEC--------NYDYYVIELSSFQLD--NMYKFHANIAVLMNITPDHLDRYDHQ 190
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + P + L++ I GH + A G E
Sbjct: 191 MQNYVDAKFRIIQNQTPDDAFIFWNDDPIIQRELHKYGIHGHYYPFAERKE-EGTAAYVE 249
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
F P + ++ + + G HN N+ A +S L G+ E + + +
Sbjct: 250 QDKVYFTEP---IAFNMEQEELALTGTHNLFNSMAAGISA-NL-AGIRKECIREALGDFK 304
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
HR++ V R ++GV +++DSKATN+ + L +K K +++LGG+ K G + N
Sbjct: 305 GVEHRLEKVCR-VRGVDYINDSKATNVNSCWYALQSMKT-KTILILGGKDK---GNDYNE 359
Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGL-------SIPCFAVANMKDAVNHARRM 366
L++ +C LI+ L N L +P V +MKDAV+ A RM
Sbjct: 360 IADLVK----EKCT-------GLIYMGLHNEKLHDFFDKFGLPVADVQSMKDAVDAAYRM 408
Query: 367 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
A G+ ++LSP CASFD F+++E RG F+E
Sbjct: 409 AKKGETVLLSPCCASFDLFKSYEDRGEQFKE 439
>gi|254877481|ref|ZP_05250191.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
philomiragia subsp. philomiragia ATCC 25015]
gi|254843502|gb|EET21916.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
philomiragia subsp. philomiragia ATCC 25015]
Length = 414
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 114/378 (30%), Positives = 184/378 (48%), Gaps = 52/378 (13%)
Query: 26 KRVMSELDFAAQVIPRS-IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
++++S++D Q I + K++AVTG+NGKST+VT + +L +LG ++ + GN+G P
Sbjct: 79 QKIVSDIDLFYQSIRNTKAKMIAVTGSNGKSTIVTMLDFVLRNLGYKSILVGNIGTP--- 135
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
L KF VVEVSS+Q+++ N + V+N++PDHL+R+K + Y
Sbjct: 136 ------PLNKIGEKFDYCVVEVSSFQIDLFNSVEFD-LGCVVNVSPDHLDRYKNYEEYK- 187
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+KL L F + H + + G + V+ T
Sbjct: 188 ----------QSKLNLAKFSKDFFVYDV--HNTGIKYAGEYQIVRGSIYKDTTKL----- 230
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
L + + G HN N V L++ G+D+ + I+ + HR +IV +
Sbjct: 231 -----LDITETNLFGEHNLENIIVV-LNIFDR-FGIDISKAVAAIKKFKGLKHRCEIV-K 282
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL-GGQAKVLNGQESNGFEKLIEPLNH 323
+I GVT+++DSK TN+ AT L + K +ILL GG AK F + + L
Sbjct: 283 NIAGVTYINDSKGTNVGATIAALNSITSSKNIILLLGGVAK------GGDFSLMSKSLAK 336
Query: 324 H-RCVITFGYSGVLIWKTLVNNGLSIPC-FAVAN-MKDAVNHARRMATNGDAIVLSPGCA 380
+ + V +G K + N + C + + N MKDA A + A + + ++LSP CA
Sbjct: 337 YVKYVYLYGQD-----KEYIENYIKDLCQYQICNDMKDAFRLASQKAQDSEIVLLSPACA 391
Query: 381 SFDEFRNFEHRGMVFQEL 398
SFDEF + RG VF++L
Sbjct: 392 SFDEFSGYAERGEVFEKL 409
>gi|398937643|ref|ZP_10667352.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM41(2012)]
gi|398166760|gb|EJM54851.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM41(2012)]
Length = 448
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 118/362 (32%), Positives = 183/362 (50%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L+ AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLIGEGQPCWTFGLSKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S++ HR Q V RD+ GV++ +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSSLRTFAGLEHRCQWV-RDLNGVSYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D+ G K V++ GG K G E F+ L +P+ + R V+ G
Sbjct: 329 NVGAALAAIEGLGADIDG-KLVLIAGGDGK---GAE---FKDLRDPVAANCRAVVLMGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
LI + + G +P V ++ +AV R +A GDA++LSP CASFD F+N+E RG
Sbjct: 382 SDLIAQAI---GDGVPLIRVNSLIEAVEQCRAIAETGDAVLLSPACASFDMFKNYEDRGH 438
Query: 394 VF 395
F
Sbjct: 439 QF 440
>gi|417958025|ref|ZP_12600942.1| hypothetical protein l13_13540 [Neisseria weaveri ATCC 51223]
gi|343967417|gb|EGV35662.1| hypothetical protein l13_13540 [Neisseria weaveri ATCC 51223]
Length = 445
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 123/392 (31%), Positives = 195/392 (49%), Gaps = 30/392 (7%)
Query: 14 KATGLACLLQSGKRVMSELDFAA-QVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
+A + QSG V+ +++ A ++ +S KI+A+TG+NGK+TV + VG + G++
Sbjct: 80 RAPEIEAFKQSGGVVLGDVEILAHELKGKSDKIIAITGSNGKTTVTSLVGYLCEKCGLDT 139
Query: 73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
V GN+G P+ EA V V+E+SS+Q+E + + +VVLN++ DH
Sbjct: 140 VVAGNIGTPVLEAYMQ-----RGGKAADVWVLELSSFQLENTD-HLAADAAVVLNISEDH 193
Query: 133 LERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT 192
L+R+ + +YA K +F L + + A+K ++ W + G + D
Sbjct: 194 LDRYDDLLDYAHAKDKIFRGSGVQVLN----ADDAMCRAMKRPNRDIKWF-SLEG-QADY 247
Query: 193 EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
A + + A G L + + G HN N A +G+ L I+
Sbjct: 248 WADVQAGRLKA-GANDLLDTAAIPLQGLHNAANVLAALALCEA--VGLPRTELLQHIQTF 304
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
+ PHR++ V G+T++DDSK TN+ AT + L+ V++ GGQ K GQ+
Sbjct: 305 KGLPHRVEKVGEK-NGITFIDDSKGTNVGATAAAIAGLQ-SPLVLIAGGQGK---GQD-- 357
Query: 313 GFEKLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLS-IPCFAVANMKDAVNHARRMATNG 370
F L L N R V+ G LI + L G+ I C A +++AV A ++A +G
Sbjct: 358 -FTPLRAALHNKARAVLLIGEDAPLIRRDLTGCGVDLIDC---ATLEEAVQTAYKLAQSG 413
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVFQELAFSA 402
D ++LSP CASFD F+ + HR VF E AF A
Sbjct: 414 DIVLLSPACASFDMFKGYAHRAQVFVE-AFEA 444
>gi|423312892|ref|ZP_17290828.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
vulgatus CL09T03C04]
gi|392686923|gb|EIY80222.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
vulgatus CL09T03C04]
Length = 444
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 112/391 (28%), Positives = 191/391 (48%), Gaps = 48/391 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G ++SE++FA + + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 83 LKSQGTPIISEIEFAGRYT--NAKMICITGSNGKTTTTSLIYHIFKKAGMNVGLAGNIGQ 140
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L+ C + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 141 SLAYQVAEC--------NYDYYVIELSSFQLD--NMYKFHANIAVLMNITPDHLDRYDHQ 190
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + P + L++ I GH + A G E
Sbjct: 191 MQNYVDAKFRIIQNQTPDDAFIFWNDDPIIQRELHKYGIHGHYYPFAERKE-EGTAAYVE 249
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
F P + ++ + + G HN N+ A +S L G+ E + + +
Sbjct: 250 QDKVYFTEP---IAFNMEQEELALTGTHNLFNSMAAGISA-NL-AGIRKECIREALGDFK 304
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
HR++ V R ++GV +++DSKATN+ + L +K K +++LGG+ K G + N
Sbjct: 305 GVEHRLEKVCR-VRGVDYINDSKATNVNSCWYALQSMKT-KTILILGGKDK---GNDYNE 359
Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGL-------SIPCFAVANMKDAVNHARRM 366
L++ +C LI+ L N L +P V +MKDAV+ A RM
Sbjct: 360 IADLVK----EKCT-------GLIYMGLHNEKLHDFFDKFGLPVADVQSMKDAVDAAYRM 408
Query: 367 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
A G+ ++LSP CASFD F+++E RG F+E
Sbjct: 409 AKKGETVLLSPCCASFDLFKSYEDRGEQFKE 439
>gi|402698518|ref|ZP_10846497.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
fragi A22]
Length = 448
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 117/361 (32%), Positives = 184/361 (50%), Gaps = 41/361 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMALAAGKRVAVGGNLGTP---------ALDLLSDDIELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E N+ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTNQ-LGAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
++E + F L+ AF G++ + K +FE + + + +KV
Sbjct: 221 T---RPLMSEGLPCWTFGLSAPDFKAF-GLREENGEKYLAFEFENL-----MPVRELKVR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN A A LG +G+ +A+ S + HR Q V R+ +GV++ +DSKAT
Sbjct: 272 GAHN--QANALAALALGHAVGLPFDAMLSGLRSFTGLEHRCQWV-REFEGVSYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSG 334
N+ A + D+ G K V++ GG K G + +G + + R V+ G
Sbjct: 329 NVGAALAAIEGLGADMDG-KLVLIAGGDGK---GADFSGLHDSVA--RYCRAVVLMGRDA 382
Query: 335 VLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMV 394
LI L G S+P V+++ +A+ +R +A GDA++LSP CASFD F+N+E RG +
Sbjct: 383 GLIADAL---GDSVPQVRVSSLDEAIAQSRSLARPGDAVLLSPACASFDMFKNYEERGHL 439
Query: 395 F 395
F
Sbjct: 440 F 440
>gi|294778000|ref|ZP_06743434.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
vulgatus PC510]
gi|294448058|gb|EFG16624.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
vulgatus PC510]
Length = 444
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 112/391 (28%), Positives = 191/391 (48%), Gaps = 48/391 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G ++SE++FA + + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 83 LKSQGTPIISEIEFAGRYT--NAKMICITGSNGKTTTTSLIYHIFKKAGMNVGLAGNIGQ 140
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L+ C + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 141 SLAYQVAEC--------NYDYYVIELSSFQLD--NMYKFHANIAVLMNITPDHLDRYDHQ 190
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + P + L++ I GH + A G E
Sbjct: 191 MQNYVDAKFRIIQNQTPDDAFIFWNDDPIIQRELHKYGIHGHYYPFAERKE-EGTAAYVE 249
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
F P + ++ + + G HN N+ A +S L G+ E + + +
Sbjct: 250 QDKVYFTEP---IAFNMEQEELALTGTHNLFNSMAAGISA-NL-AGIRKECIREALGDFK 304
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
HR++ V R ++GV +++DSKATN+ + L +K K +++LGG+ K G + N
Sbjct: 305 GVEHRLEKVCR-VRGVDYINDSKATNVNSCWYALQSMKT-KTILILGGKDK---GNDYNE 359
Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGL-------SIPCFAVANMKDAVNHARRM 366
L++ +C LI+ L N L +P V +MKDAV+ A RM
Sbjct: 360 IADLVK----EKCT-------GLIYMGLHNEKLHDFFDKFGLPVADVQSMKDAVDAAYRM 408
Query: 367 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
A G+ ++LSP CASFD F+++E RG F+E
Sbjct: 409 AKKGETVLLSPCCASFDLFKSYEDRGEQFKE 439
>gi|385342563|ref|YP_005896434.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis M01-240149]
gi|385857876|ref|YP_005904388.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis NZ-05/33]
gi|416186513|ref|ZP_11613793.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis M0579]
gi|325136987|gb|EGC59584.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis M0579]
gi|325202769|gb|ADY98223.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis M01-240149]
gi|325208765|gb|ADZ04217.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis NZ-05/33]
Length = 445
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 121/390 (31%), Positives = 191/390 (48%), Gaps = 44/390 (11%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNADDAFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
T + G + ++ + G HN N AAVA +GL EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGL----PREALLEHVKTFQ 305
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
PHR++ + + GV ++DDSK TN+ AT + L+ + ++LGG K GQ+
Sbjct: 306 GLPHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGK---GQD--- 357
Query: 314 FEKLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 372
F L + L + V G I + L GL++ A +++AV A A D
Sbjct: 358 FTPLRDALAGKAKGVFLIGVDAPQIRRDLDGCGLNMT--DCATLEEAVQTAYAQAEACDI 415
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQELAFSA 402
++LSP CASFD F+ + HR VF E AF A
Sbjct: 416 VLLSPACASFDMFKGYAHRSEVFIE-AFKA 444
>gi|319639798|ref|ZP_07994528.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
3_1_40A]
gi|345518945|ref|ZP_08798378.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
4_3_47FAA]
gi|254833581|gb|EET13890.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
4_3_47FAA]
gi|317388615|gb|EFV69464.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
3_1_40A]
Length = 444
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 112/391 (28%), Positives = 191/391 (48%), Gaps = 48/391 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G ++SE++FA + + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 83 LKSQGTPIISEIEFAGRYT--NAKMICITGSNGKTTTTSLIYHIFKKAGMNVGLAGNIGQ 140
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L+ C + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 141 SLAYQVAEC--------NYDYYVIELSSFQLD--NMYKFHANIAVLMNITPDHLDRYDHQ 190
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + P + L++ I GH + A G E
Sbjct: 191 MQNYVDAKFRIIQNQTPDDAFIFWNDDPIIQRELHKYGIHGHYYPFAERKE-EGTAAYVE 249
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
F P + ++ + + G HN N+ A +S L G+ E + + +
Sbjct: 250 QDKVYFTEP---IAFNMEQEELALTGTHNLFNSMAAGISA-NL-AGIRKECIREALGDFK 304
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
HR++ V R ++GV +++DSKATN+ + L +K K +++LGG+ K G + N
Sbjct: 305 GVEHRLEKVCR-VRGVDYINDSKATNVNSCWYALQSMKT-KTILILGGKDK---GNDYNE 359
Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGL-------SIPCFAVANMKDAVNHARRM 366
L++ +C LI+ L N L +P V +MKDAV+ A RM
Sbjct: 360 IADLVK----EKCT-------GLIYMGLHNEKLHDFFDKFGLPVADVQSMKDAVDAAYRM 408
Query: 367 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
A G+ ++LSP CASFD F+++E RG F+E
Sbjct: 409 AKKGETVLLSPCCASFDLFKSYEDRGEQFKE 439
>gi|329122141|ref|ZP_08250749.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dialister
micraerophilus DSM 19965]
gi|327466948|gb|EGF12464.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dialister
micraerophilus DSM 19965]
Length = 449
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 129/384 (33%), Positives = 197/384 (51%), Gaps = 37/384 (9%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++ A + SI LAVTGTNGK+T +G ML + G + V GNLG LS+ A
Sbjct: 91 VISEIELAFCITKASI--LAVTGTNGKTTTTKLLGLMLKNSGKKFAVAGNLGVSLSDKA- 147
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
L K + EVSS+Q+E K F P + +LN+TPDHLERH TM+ Y K
Sbjct: 148 ---DLIDEKS---IIAAEVSSFQLEFI-KNFKPKTAAILNITPDHLERHHTMEAYVQAKA 200
Query: 148 HLFSHMVNTKLGLLPFGNQHLNE----AIKGHRFNLAWI------GAFPGVKIDTEAKTA 197
+F +M LL +++ NE A K L I GAF +D E
Sbjct: 201 RIFENMNFENCILLNADDKYTNELTEMANKHTNVCLFSIQKNIDNGAF----LDGEELVI 256
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
S++ + + ++ +L ++ G+ NY NA A S L G+ +EA+ + ++ + PH
Sbjct: 257 SYKGNKINICNKNEL---QIKGKQNYANALAA--SFLAFFSGISLEAIRAALKEFKGLPH 311
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R++ V R + + + +DSKATN +A+ G M+ +++ GG K + E +K+
Sbjct: 312 RIEFV-RKFKNINYYNDSKATNTDASIKG-MEAFDKPVILIAGGHDKGIPLSEY--MKKV 367
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
E H + +I G + K + G+S A +M+DAV A + A GD I+LSP
Sbjct: 368 KE---HTKELILIGEATERFEKVAIKEGVSNITRA-KDMEDAVYKATKFAEAGDIIILSP 423
Query: 378 GCASFDEFRNFEHRGMVFQELAFS 401
C+SFD ++N RG F+ + S
Sbjct: 424 ACSSFDMYKNMAERGNDFKRIVNS 447
>gi|339009181|ref|ZP_08641753.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus
laterosporus LMG 15441]
gi|421873582|ref|ZP_16305194.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus
laterosporus GI-9]
gi|338773659|gb|EGP33190.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus
laterosporus LMG 15441]
gi|372457369|emb|CCF14743.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus
laterosporus GI-9]
Length = 457
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 107/379 (28%), Positives = 188/379 (49%), Gaps = 36/379 (9%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A ++ ++ +TG+NGK+T T VG +L+ ++A VGGN+G L
Sbjct: 96 VITEVELAYRL--SKAPLIGITGSNGKTTTTTLVGLILHAASVDAIVGGNIGTVL----- 148
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
C KP Q V E+SS+Q+ + F P ++ +LNL P HL+ H + + Y KC
Sbjct: 149 -CSLAEEMKPD-QYLVAELSSFQL-MGTDTFRPHIATILNLYPAHLDYHHSFEEYTKAKC 205
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV--- 204
+F++ +LP+ ++ + + + R + + V I E +F +
Sbjct: 206 KIFANQTEEDYAVLPYDHEPVMKVCQNIRAKVFY------VSIKQEVPCGAFIKDGIVYF 259
Query: 205 ----GVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
G + + ++ + + G N NA A V+ G D +A+ + HR+
Sbjct: 260 KNEDGKLDEIMKATEISLPGEFNQENALAAI--VMSKLAGADYDAMKHVLRSFSGVEHRL 317
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319
+ V I GV + ++SKATN EA G+ K V++ GG + ++ F +L+
Sbjct: 318 EYVDT-IAGVKYYNNSKATNSEAAIRGIEAFK-EPVVLIAGGLDRGVD------FAELVP 369
Query: 320 PL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
PL N + +IT+G + ++ K G+ + FAV + AV A +A D ++LSP
Sbjct: 370 PLKNKVKAIITYGQTSPILQKRAEEAGIELR-FAVDTVDSAVKQAAAIAEANDVVLLSPA 428
Query: 379 CASFDEFRNFEHRGMVFQE 397
CAS+D F ++E RG +F++
Sbjct: 429 CASWDMFPSYEVRGSMFKD 447
>gi|350570241|ref|ZP_08938609.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
wadsworthii 9715]
gi|349797290|gb|EGZ51057.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
wadsworthii 9715]
Length = 445
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 122/387 (31%), Positives = 194/387 (50%), Gaps = 38/387 (9%)
Query: 23 QSGKRVMSELDFAA-QVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
QSG V+ +++ A ++ +S KI+A+TG+NGK+TV + VG + G++ V GN+G P
Sbjct: 89 QSGGVVLGDVEILAHELKGKSDKIIAITGSNGKTTVTSLVGYLCEKCGLDTVVAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA V V+E+SS+Q+E + + +VVLN++ DHL+R+ + +
Sbjct: 149 VLEAYMQ-----RDGKAADVWVLELSSFQLENTD-HLAADAAVVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFS----HMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
YA K +F ++N + + A+K ++ W + G + D A
Sbjct: 203 YAHAKDKIFRGNGVQVLNA--------DDVMCRAMKRPNRDIKWF-SLEG-QADYWADVQ 252
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+ + A G L + + G HN N A +G+ L I+ + PH
Sbjct: 253 AGRLKA-GADDLLDTAAIPLQGLHNAANVLAALALCEA--VGLPRTELLQHIQTFKGLPH 309
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R++ V G+T++DDSK TN+ AT + L+ V++ GGQ K GQ+ F L
Sbjct: 310 RVEKVGEK-NGITFIDDSKGTNVGATAAAIAGLQ-SPLVLIAGGQGK---GQD---FTPL 361
Query: 318 IEPL-NHHRCVITFGYSGVLIWKTLVNNGLS-IPCFAVANMKDAVNHARRMATNGDAIVL 375
L N R V+ G LI + L G+ I C A +++AV A ++A +GD ++L
Sbjct: 362 RAALHNKARAVLLIGVDAPLIRRDLTGCGVDLIDC---ATLEEAVQTAYKLAQSGDIVLL 418
Query: 376 SPGCASFDEFRNFEHRGMVFQELAFSA 402
SP CASFD F+ + HR VF E AF A
Sbjct: 419 SPACASFDMFKGYAHRAQVFVE-AFEA 444
>gi|254525588|ref|ZP_05137640.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
marinus str. MIT 9202]
gi|221537012|gb|EEE39465.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
marinus str. MIT 9202]
Length = 478
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 107/395 (27%), Positives = 194/395 (49%), Gaps = 40/395 (10%)
Query: 16 TGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVG 75
T + L + G +V+ E++ A +++ + + +TGTNGK+TV + +L G+ A
Sbjct: 94 TTIIELKKKGIKVVGEINVAWEIL-KDTNWIGITGTNGKTTVTHLLSHILCDNGLYAPFA 152
Query: 76 GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLER 135
GN+G PL + A C K V E+SSYQ+EI + P + + T DHLER
Sbjct: 153 GNIGTPLCKYA--C---SKKLEKIDWVVAELSSYQIEISPE-VKPNIGIWTTFTEDHLER 206
Query: 136 HKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAK 195
HKT++NY K L + + + +++L + H +L+ GV I T
Sbjct: 207 HKTLENYFNIKKSLLEK---SDFRIYNYDDKNL----RNHYSSLS-----RGVWITTSLD 254
Query: 196 TASFEVPAVGVVSQ----------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
++F + Q +L + G HN N + +V +G+ + +
Sbjct: 255 KSNFIQCDYWIDDQAYIVERGKRLFKLEYFSLRGMHNLQNLLLVIAAV--RKVGLSGKEI 312
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKV 305
++ + PHRM+ ++++ + ++DSKATN +++ G+ ++G + +I+ GG+
Sbjct: 313 KDSLSNYKQLPHRMETIYKN-NYLEIINDSKATNFDSSIAGISSIEG-QMIIIAGGR--- 367
Query: 306 LNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR 365
L G E + + K+++ +C+ FG S ++ L+N G F + +KD +N
Sbjct: 368 LKGNEYSEWIKVLKK--KVKCIFLFGESSKVLKMALINEGFKKSIFEFSELKDLLNFVFH 425
Query: 366 MATNG--DAIVLSPGCASFDEFRNFEHRGMVFQEL 398
N ++ SP C+SFD+F+N+E RG F++L
Sbjct: 426 YLQNNRVRTLLFSPSCSSFDQFKNYEERGDYFKKL 460
>gi|83589692|ref|YP_429701.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Moorella
thermoacetica ATCC 39073]
gi|118595666|sp|Q2RK81.1|MURD_MOOTA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|83572606|gb|ABC19158.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Moorella
thermoacetica ATCC 39073]
Length = 455
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 122/386 (31%), Positives = 192/386 (49%), Gaps = 22/386 (5%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
LA G V SEL+ A +++P +K++A+TGTNGK+T + G++L G A VGGN
Sbjct: 83 LARARARGIPVWSELELAYRLLPPGVKVVAITGTNGKTTTTSLCGRILQEAGWPAVVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G PL + IA P S V EVSS+Q+E F P V+ +LN+TPDHL+RH
Sbjct: 143 IGIPLVK-ELQEIA-PGS-----YVVCEVSSFQLEAITS-FHPQVAAILNITPDHLDRHG 194
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG--AFPGVKIDTEAK 195
+++NY K + ++ +L + + H G R + + P + E
Sbjct: 195 SLENYIAAKARVMAYQEARDFAILNYDDPHTRSLAGGARSRVLFFSRRERPPLGAWLEDG 254
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
++ A G V + + G HN N+ AAL L +GVD E L T++
Sbjct: 255 VICCDLGAGGTVKLCHCEELSLKGSHNLENSMAAALVA--LALGVDPEQLTRTLKTFPAV 312
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
PHR++ V +I GV +++DSK TN EAT + + + V++ GG+ K + F
Sbjct: 313 PHRLEPVA-EINGVCYINDSKGTNPEATMKAI-NAYSNPLVLIAGGRNK------GSDFT 364
Query: 316 KLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 374
L + + + ++ G + + + G+ + + AV A A GD ++
Sbjct: 365 LLAQQMAGRVKHLVLVGEAARELEQAARKAGID-SIYLAPDFASAVREAAGAARPGDIVM 423
Query: 375 LSPGCASFDEFRNFEHRGMVFQELAF 400
LSP CAS+D F+N+E RG VF+ L
Sbjct: 424 LSPACASWDMFKNYEERGDVFKSLVL 449
>gi|208778934|ref|ZP_03246280.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
novicida FTG]
gi|208744734|gb|EDZ91032.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
novicida FTG]
Length = 417
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 117/379 (30%), Positives = 180/379 (47%), Gaps = 56/379 (14%)
Query: 27 RVMSELDFAAQVIPRS-IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85
+++S++D Q I + K +AVTG+NGKSTVVT +L LG ++ + GN+G P
Sbjct: 80 KIVSDIDIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVGNIGTP---- 135
Query: 86 AFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSV--VLNLTPDHLERHKTMKNYA 143
AL KF VVEVSS+Q+++ N C + ++N++PDHL+R++ + Y
Sbjct: 136 -----ALNKIGEKFDYCVVEVSSFQIDLFN---CVRFDLGCIINVSPDHLDRYQNFEQYK 187
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203
+KL L F N + H + + G + ++ +
Sbjct: 188 -----------QSKLNLAKFSNDFFVYDV--HNNGIKYAGEYQIIRGAIYRNSTKL---- 230
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVA--ALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
L + K+ G HN N V L LGLDI +A++S I+ + HR +I
Sbjct: 231 ------LDIAETKLFGEHNLENIIVVLNILDRLGLDIN---QAIDS-IKKFKGLEHRCKI 280
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL-GGQAKVLNGQESNGFEKLIEP 320
V + + T+++DSK TN+ AT L + K +ILL GG AK F +I+
Sbjct: 281 VKK-VNDTTYINDSKGTNVGATIAALNSITNSKNIILLLGGVAK------GGDFSLMIKS 333
Query: 321 LNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 379
L+ + + V +G I + C NMK A A + A + + ++LSP C
Sbjct: 334 LDKYVKYVYIYGADKEYIESYIKGYCKYQLC---NNMKQAFELASQKANSNEIVLLSPAC 390
Query: 380 ASFDEFRNFEHRGMVFQEL 398
ASFDEF + RG VFQ L
Sbjct: 391 ASFDEFSGYAQRGEVFQNL 409
>gi|384086037|ref|ZP_09997212.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
thiooxidans ATCC 19377]
Length = 449
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 117/373 (31%), Positives = 173/373 (46%), Gaps = 23/373 (6%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
++G VM +++ A + S I+A+TG+NGKSTV T V ++ GI GGNLG P
Sbjct: 88 KAGITVMGDIELFALLA--SAPIIAITGSNGKSTVTTLVSEIARKAGIMVATGGNLGTPA 145
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
E LP S P+ ++E+SS+Q++ F P V+ +LNL+PDHL+ H Y
Sbjct: 146 LE------LLPESGPEPAWYILELSSFQLDACTT-FRPRVAAILNLSPDHLDWHGDYAQY 198
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K +F +M N L+ G ++ G + I F ++A + +
Sbjct: 199 GAAKARIFQNM-NAGDVLVLNGEDAFTSSLPGQVPDSVAIRCFAVHDERSDAYVLNDRLT 257
Query: 203 AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
+ L ++++ G HN NA AAL + A+ PHR+ V
Sbjct: 258 LRNSGALLPAADLRMQGGHNIENALAAALLAEAAQF--PLAAIQEVFCQFSGLPHRLAWV 315
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322
+ QGV + DDSK TNL AT + L G V++LGG K + L +
Sbjct: 316 A-EYQGVNYYDDSKGTNLGATLKAMSGLSG-PLVMILGGDVKGAD------LSPLQQACR 367
Query: 323 HHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASF 382
R + G I + L N IP +M+DAV A A GD ++LSP CAS
Sbjct: 368 DQRAAVVLGKDAKKIAQMLEN---VIPVDYADSMQDAVLKAASRAMPGDQVLLSPACAST 424
Query: 383 DEFRNFEHRGMVF 395
D FR+++ RG F
Sbjct: 425 DMFRDYQDRGQQF 437
>gi|146328783|ref|YP_001209872.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dichelobacter
nodosus VCS1703A]
gi|146232253|gb|ABQ13231.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dichelobacter
nodosus VCS1703A]
Length = 436
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 128/405 (31%), Positives = 200/405 (49%), Gaps = 66/405 (16%)
Query: 17 GLACLLQSGKRV----MSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
G+ C + K + M++++ A++I + + AVTG+NGKSTVVT + +G++
Sbjct: 73 GIDCRRTAFKNIHATLMNDVELFARLIEKPVA--AVTGSNGKSTVVTMLADAARAVGLKT 130
Query: 73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT----VSVVLNL 128
+ GN+G + A P + V+E+SSYQ+E CP+ V VVLN+
Sbjct: 131 QLCGNIGKSVLTAWLEDEEEPD------LYVLELSSYQLE-----RCPSLMIDVGVVLNV 179
Query: 129 TPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV 188
TPDHL+R+ + +Y K HL T+L +L +++ + R + F G
Sbjct: 180 TPDHLDRYDSFLDYVAAKSHLAQQ---TQLTILNGDDEYCRQMAPLSRQTV-----FFGA 231
Query: 189 KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL--SVLGLDIGVDVEALN 246
+ + + V V++ +L K+ G+HN +NA VA L S LG+DI +EAL
Sbjct: 232 QCVNRVENGAIIVNGQTVLTADEL---KIHGQHNAYNALVALLMASGLGIDISYTLEALK 288
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVL 306
+ R PHRM V V W++DSKATN+ +T L+ +++GG K
Sbjct: 289 N----FRGLPHRMCEVAC-FNDVLWLNDSKATNIASTAAALVGCT-RPTWLIVGGVGK-- 340
Query: 307 NGQESNGFEKLI--EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANM-------- 356
GQ+ + ++ P+ H V+ G V+N I F AN+
Sbjct: 341 -GQDFHQLAAVLLQAPIKH---VLMIG----------VDNHTMIAAFKKANIAFHDCGTI 386
Query: 357 KDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 401
K AV++A + A GD ++LSP ASFD+FRN+E RG VF + S
Sbjct: 387 KAAVSYAYQNADAGDQVLLSPATASFDQFRNYEERGDVFADEVLS 431
>gi|407363737|ref|ZP_11110269.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
mandelii JR-1]
Length = 448
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 117/362 (32%), Positives = 185/362 (51%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGAKQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L+ AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLMGEGQPCWTFGLSKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S++ HR Q V R++ GV++ +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSSLRTFAGLEHRCQWV-RELDGVSYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D+ G K V++ GG K G E F+ L +P+ + R V+ G
Sbjct: 329 NVGAALAAIEGLGADIDG-KLVLIAGGDGK---GAE---FKDLRDPVAANCRAVVLMGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
LI + + G ++P V+++ +AV R +A GDA++LSP CASFD F+N+E RG
Sbjct: 382 SDLIGQAI---GDAVPLIRVSSLDEAVAQCRAVAEPGDAVLLSPACASFDMFKNYEDRGH 438
Query: 394 VF 395
F
Sbjct: 439 QF 440
>gi|240948408|ref|ZP_04752786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Actinobacillus minor NM305]
gi|240297234|gb|EER47792.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Actinobacillus minor NM305]
Length = 434
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 120/408 (29%), Positives = 190/408 (46%), Gaps = 54/408 (13%)
Query: 5 WLFLLEFQLKATGLACL-------LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA +Q+G V+ +++ + I+A+TG NGKSTV
Sbjct: 63 WLLSSDLIVISPGLALATPEIQQAIQAGVEVVGDIELFCR--EAKAPIIAITGANGKSTV 120
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T +M GI+ +GGN+G P AL K +++ V+E+SS+Q+E
Sbjct: 121 TTLTTEMAKQAGIKVGMGGNIGVP---------ALSLLKSDYELYVLELSSFQLETTYS- 170
Query: 118 FCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLG---LLPFGNQHLNEAIK 173
+ +LN++ DH++R+ +++ Y K ++ + N + L + Q + + I+
Sbjct: 171 LKAKAATILNISEDHMDRYNNSVEEYRAAKLRIYQNAENIIVNGEDPLTYPTQAVEKLIR 230
Query: 174 GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV 233
N + K DT +++ +G+ M + GRHN NA A
Sbjct: 231 FAEQNAEY-----SKKNDT---LYAYDDAVIGI------KQMLIRGRHNEMNALAAMALA 276
Query: 234 LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-G 292
G+ E + ++I PHR Q V + GV WV+DSKATN+ +T L L+
Sbjct: 277 E--AAGIPREGIVKALQIYGGLPHRFQAVATN-DGVRWVNDSKATNVGSTVAALNGLEVA 333
Query: 293 HKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCV-ITFGYSGVLIWKTLVNNGLSIPCF 351
+LLGG K + F +L+ +N V FG G + K LS
Sbjct: 334 GTLYLLLGGDGKAAD------FSELVPLVNKSNIVCYCFGQDGEQLAK------LSTQSV 381
Query: 352 AVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
VA M++AV R GD ++LSP CAS D+F+NFE RG +F LA
Sbjct: 382 LVATMQEAVEQIRPQLKTGDMVLLSPACASLDQFKNFEERGNIFMALA 429
>gi|150390641|ref|YP_001320690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Alkaliphilus
metalliredigens QYMF]
gi|167017285|sp|A6TS63.1|MURD_ALKMQ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|149950503|gb|ABR49031.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkaliphilus
metalliredigens QYMF]
Length = 455
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 123/399 (30%), Positives = 202/399 (50%), Gaps = 45/399 (11%)
Query: 12 QLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE 71
Q+KA G+ ++ E++ A + + R KI+A+TGTNGK+T G++ G
Sbjct: 89 QIKAQGI--------EIIGEVELAFR-LSRG-KIVAITGTNGKTTTTALTGEIFKGAGKN 138
Query: 72 AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPD 131
+V GN+G P E A + V V+EVSS+Q+E K F P V +LNLTPD
Sbjct: 139 TYVVGNIGVPFIEKALDT-------TEEDVIVIEVSSFQLE-SIKEFHPKVGTLLNLTPD 190
Query: 132 HLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG--------HRFNLAWIG 183
HL RHKT++NY K +LF + +L + + EA K R + G
Sbjct: 191 HLNRHKTIENYREAKLNLFMNQSLQDYAVLNYDDITSREAGKTLAAQKIYFSRKQILEEG 250
Query: 184 AFPGVKIDT-EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242
F ++ T + K ++V + + +K++G+HN NA A + + +GV
Sbjct: 251 VFVDNQLITIQTKEKRYDV--------IHIDEIKILGQHNLENALAA--TAMTFILGVSA 300
Query: 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ 302
E + + HR++ V +I+GV +++DSK TN +A+ + + ++L GGQ
Sbjct: 301 EDIAKGLRNFPGVAHRLEFVE-EIEGVKYINDSKGTNTDASIKAIEAAQA-PIILLAGGQ 358
Query: 303 AKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNH 362
K G + F K + H ++ +G + I++T ++N + V ++++AV
Sbjct: 359 DK---GGDFTDFVKAFDGKVKH--LLVYGETSDNIYETALHNNFKVVS-QVRDLEEAVIR 412
Query: 363 ARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 401
A+ +A GD I+LSP CAS+D + NFE RG F++L S
Sbjct: 413 AKGIAQAGDTILLSPACASWDMYPNFEARGQHFKKLVSS 451
>gi|148828296|ref|YP_001293049.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae PittGG]
gi|166224763|sp|A5UIR0.1|MURD_HAEIG RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|148719538|gb|ABR00666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae PittGG]
Length = 437
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 119/410 (29%), Positives = 194/410 (47%), Gaps = 53/410 (12%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA L++G V+ +++ + + I + +TG+NGKSTV
Sbjct: 62 WLLESDMIVISPGLAVKTPEIQTALKAGVEVIGDIELFCRAATKPI--VGITGSNGKSTV 119
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G++ +GGN+G P AL ++ V+E+SS+Q+E
Sbjct: 120 TTLVYEMAKAAGVKVGMGGNIGIP---------ALSLLNEDCELYVLELSSFQLETTYSL 170
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL------PFGNQHLNEA 171
V+V LN+T DH++R+ +++Y K + N K+G+L FG NE
Sbjct: 171 KAAAVTV-LNVTEDHMDRYMDLEDYRQAKLRIHH---NAKVGVLNNEDRLTFGE---NEN 223
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
H + A A +K + + + + L ++GRHNY N + A
Sbjct: 224 QAKHTVSFAENSADYWLKTENGKQYLMVKDEVI-----LPCEEATLVGRHNYMN--ILAA 276
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L IG++++++ + + + HR Q+VH+ G+ W++DSKATN+ +T L L
Sbjct: 277 TALAQAIGINLDSIRTALRHFKGLDHRFQLVHQ-ANGIRWINDSKATNVGSTVAALAGLY 335
Query: 292 GH-KCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFGYSGVLIWKTLVNNGLSIP 349
K +LLGG K + F +L E +N H FG G + K S
Sbjct: 336 IEGKLHLLLGGDGKGAD------FSELAELINQPHIICYCFGRDGAQLAK------FSSQ 383
Query: 350 CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
+ M+ A+ R +GD ++LSP CAS D+F +FE RG F LA
Sbjct: 384 SYLFETMEQAIEFLRPTLQSGDMVLLSPACASLDQFASFEKRGEEFTHLA 433
>gi|104783455|ref|YP_609953.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
entomophila L48]
gi|95112442|emb|CAK17169.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
entomophila L48]
Length = 448
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 119/368 (32%), Positives = 178/368 (48%), Gaps = 47/368 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IIAISGSNAKSTVTTLVGEMAAQAGKRVAVGGNLGTP---------ALDLLDDSVELYVL 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 ---LPF-GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
LP G + + F AF ++D E K +FE + + + +K
Sbjct: 221 SRPLPVEGRPSWSFGLNAPDFK-----AFGLREVDGE-KHLAFEFQTL-----MPVRELK 269
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
+ G HN NA A G+ E + + + HR Q V R+ GV W DDSK
Sbjct: 270 IRGAHNQSNALAALALGHA--AGLPFEPMLEALREFKGLAHRCQWV-RERNGVNWYDDSK 326
Query: 277 ATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFG 331
ATN+ A + D++G K V++ GG K + F L EP+ H R V+ G
Sbjct: 327 ATNVGAALAAIEGLGADIEG-KLVLIAGGDGKGAD------FAALREPVAQHCRAVVLLG 379
Query: 332 YSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 391
+ +TL G ++P V + +AV +A GDA++LSP CAS D F+NFE R
Sbjct: 380 RDAERLAETL---GDTVPQVRVKTLDEAVQRCAELAQPGDAVLLSPACASLDMFKNFEER 436
Query: 392 GMVFQELA 399
G +F + A
Sbjct: 437 GRLFAQAA 444
>gi|337288495|ref|YP_004627967.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Thermodesulfobacterium sp. OPB45]
gi|334902233|gb|AEH23039.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Thermodesulfobacterium geofontis OPF15]
Length = 467
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 115/378 (30%), Positives = 187/378 (49%), Gaps = 29/378 (7%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SEL+ A Q + + +A+TGTNGK+T V ++L G + F GGN G PLSE
Sbjct: 94 VLSELEIAWQFLKNKEETIAITGTNGKTTTTAMVSELLKLSGYKVFTGGNYGIPLSELVV 153
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ + V+EVSS+Q+E N Y F P V ++LN++PDHLER+ + + YA K
Sbjct: 154 SNVLVDK-------IVLEVSSFQLE--NIYTFSPKVGILLNISPDHLERYNSYEEYAYYK 204
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
LF +LPF K + + + K K ++ + +
Sbjct: 205 YRLFEFQKEDNYAILPFNEPWFERFGKLIKSRILFFDEKENEKATAYLKLSNISSEDLFI 264
Query: 207 VSQ-----LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
++ K++G HN N VA+L L E++ I+ R PHR++
Sbjct: 265 INLGNKEFYSFSGFKLLGIHNKINFMVASLGARLL--SATKESIERLIKEFRGFPHRLEY 322
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
+ + GV +++DSKATN++AT L L G +++LGG+ K + LI +
Sbjct: 323 IG-EFGGVYFINDSKATNVDATLQALKSLPG-PIILILGGKHK------GASYAPLISYI 374
Query: 322 NHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 380
R +I G S ++ + L NG++ + + A A + A GD ++LSP C+
Sbjct: 375 KEKVRILILMGESRFIMAEEL--NGIT-ETYLSETLSSATLLAIKFAKPGDTVLLSPACS 431
Query: 381 SFDEFRNFEHRGMVFQEL 398
SFD+F +++ RG VF+++
Sbjct: 432 SFDQFNDYKERGEVFRKI 449
>gi|435854480|ref|YP_007315799.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Halobacteroides
halobius DSM 5150]
gi|433670891|gb|AGB41706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Halobacteroides
halobius DSM 5150]
Length = 454
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 111/386 (28%), Positives = 192/386 (49%), Gaps = 43/386 (11%)
Query: 24 SGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
+G V+SE++ A + + +ILA+TG+NGK+T G++ + VGGN+G L
Sbjct: 92 AGIEVISEVELAYRYT--TAQILAITGSNGKTTTTMLTGEIFKETDFKTIVGGNIGRALI 149
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
+ + K +A+ E+SS+Q+E K F P +S+VLNLTPDHL+RH T +NYA
Sbjct: 150 KDLPYL-------SKEDLAIAEISSFQLE-GTKEFRPKISLVLNLTPDHLDRHGTFENYA 201
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--------GAF-PGVKIDTEA 194
K + + +L + +Q + + + + G F KI +
Sbjct: 202 AAKKKIVVNQRKEDYAILNYDDQDVRQFANSTAAEVVFFSQQEELEKGVFVTDNKIVSNL 261
Query: 195 KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVA-ALSVLGLDIGVDVEALNSTIEILR 253
K + E+ + + + + G HN NA A A+S+L +GV + L +
Sbjct: 262 KGQTEEI--------ISIEQLGLKGPHNLENALGAIAMSLL---MGVSKDKLVKVLSEFT 310
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN- 312
+ HR++ V I+GV +V+DSK TN A L +++ GG K ES+
Sbjct: 311 SVEHRIEGVAT-IKGVKYVNDSKGTNPAAAIKALETF-NEPIILIAGGMNK-----ESDF 363
Query: 313 -GFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD 371
F K+ N + ++ G + I + G + + V+ +++A + A ++A+ GD
Sbjct: 364 TDFAKI--AANKIKGLVLLGETADEIEDKVKEFGFT-DTYQVSGIEEATHQASQLASQGD 420
Query: 372 AIVLSPGCASFDEFRNFEHRGMVFQE 397
++LSP CAS+D F +++HRG +F++
Sbjct: 421 IVLLSPACASWDMFSSYKHRGKMFKK 446
>gi|319897397|ref|YP_004135594.1| udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase [Haemophilus
influenzae F3031]
gi|317432903|emb|CBY81269.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
influenzae F3031]
Length = 437
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 193/410 (47%), Gaps = 53/410 (12%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA L++G V+ +++ + + I + +TG+NGKSTV
Sbjct: 62 WLLESDMIVISPGLAVKTPEIQTALKAGVEVIGDIELFCRTATKPI--VGITGSNGKSTV 119
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G++ +GGN+G P AL ++ V+E+SS+Q+E
Sbjct: 120 TTLVYEMAKAAGVKVGMGGNIGIP---------ALSLLNEDCELYVLELSSFQLETTYS- 169
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL------PFGNQHLNEA 171
+ VLN+T DH++R+ +++Y K ++ N K+G+L FG NE
Sbjct: 170 LKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYH---NAKVGVLNNEDRLTFGE---NEN 223
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
H + A A +K + + + + L ++GRHNY N + A
Sbjct: 224 QAKHTVSFAENSADYWLKTENGKQYLMVKDEVI-----LPCEEATLVGRHNYMN--ILAA 276
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L IG++++++ + + + HR Q+ H G+ W++DSKATN+ +T L L
Sbjct: 277 TALAQAIGINLDSIRTALRHFKGLDHRFQLAHH-ANGIRWINDSKATNVGSTVAALAGLY 335
Query: 292 GH-KCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFGYSGVLIWKTLVNNGLSIP 349
K +LLGG K + F +L E +N H FG GV + K S
Sbjct: 336 IEGKLHLLLGGDGKGAD------FSELAELINQPHIICYCFGRDGVQLAK------FSSQ 383
Query: 350 CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
+ M+ A+ R +GD ++LSP CAS D+F +FE RG F LA
Sbjct: 384 SYLFETMEQAIAFLRPTLQSGDMVLLSPACASLDQFASFEKRGEEFTHLA 433
>gi|78484911|ref|YP_390836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thiomicrospira
crunogena XCL-2]
gi|118595701|sp|Q31I61.1|MURD_THICR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|78363197|gb|ABB41162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thiomicrospira
crunogena XCL-2]
Length = 449
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 118/390 (30%), Positives = 191/390 (48%), Gaps = 48/390 (12%)
Query: 20 CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG 79
C+ Q G V+ +++ A+ + I +A+TG+NGKSTV T V + L G VGGN+G
Sbjct: 80 CINQ-GTEVIGDIELFARAAGKPI--VAITGSNGKSTVTTLVAEALKEAGYAVGVGGNIG 136
Query: 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVS-VVLNLTPDHLERHKT 138
P A + P+ +F V V+E+SS+Q+E Y T++ VLN++ DH++R+
Sbjct: 137 CP----ALDLLTHPT---EFDVYVLELSSFQLE--TTYSLQTIAATVLNISEDHMDRYLA 187
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH--RFNLAWIGAFP----GVKIDT 192
+++Y K + + NT+L +LP + + A G RF L + A P G+ +
Sbjct: 188 LEDYIQAKMTILN---NTELAVLPLDFERVGIARPGDEVRFGLNYAEALPPKEYGIVMKN 244
Query: 193 EAKTASFE----VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
+E VP + Q G H+ NA A+ L +
Sbjct: 245 GQAWLGWEDHASVPVTAMAQQ---------GLHHQLNAL--AMMALCRPFDLSDAVFEKV 293
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG--HKCVILLGGQAKVL 306
++ + PHR Q+V +GV W++DSK TN+ AT T + +K VIL+ G
Sbjct: 294 LKTFKGLPHRTQVVLEQ-EGVRWINDSKGTNVGATVTAIESIKETLDGQVILIAGGV--- 349
Query: 307 NGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRM 366
G+E++ E + R I FG +I + L + + V + +AV A+ +
Sbjct: 350 -GKEADFNELGQAVVQSCRQAILFGQDKAIIAQQLPQEKIQL----VDTLSEAVLLAKTI 404
Query: 367 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
A +GDA++ SP CASFD+F+N+ RG F+
Sbjct: 405 AKSGDAVLFSPACASFDQFKNYIERGNAFE 434
>gi|385340654|ref|YP_005894526.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis G2136]
gi|416200857|ref|ZP_11619754.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 961-5945]
gi|421556477|ref|ZP_16002392.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 80179]
gi|433466620|ref|ZP_20424081.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 87255]
gi|325142974|gb|EGC65331.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 961-5945]
gi|325198898|gb|ADY94354.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis G2136]
gi|402337150|gb|EJU72400.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 80179]
gi|432204730|gb|ELK60769.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 87255]
Length = 445
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 117/386 (30%), Positives = 187/386 (48%), Gaps = 49/386 (12%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
T + G + ++ + G HN N AAVA +GL N +E ++
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGL-------PRNELLEHVK 302
Query: 254 T---PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
T PHR++ + + GV ++DDSK TN+ AT + L+ + ++LGG K GQ+
Sbjct: 303 TFQGLPHRVEKIGKK-NGVVFIDDSKGTNVGATAAAITGLQ-NPLFVILGGMGK---GQD 357
Query: 311 SNGFEKLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN 369
F L + L + V G I + L +G + A +++AV A A
Sbjct: 358 ---FTPLRDALAGKAKGVFLIGVDAPQIRRDL--DGCDLNMTDCATLEEAVQKAYAQAEA 412
Query: 370 GDAIVLSPGCASFDEFRNFEHRGMVF 395
GD ++LSP CASFD F+ + HR VF
Sbjct: 413 GDIVLLSPACASFDMFKGYAHRSEVF 438
>gi|429749513|ref|ZP_19282632.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. oral taxon 332 str. F0381]
gi|429168050|gb|EKY09911.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. oral taxon 332 str. F0381]
Length = 445
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 105/381 (27%), Positives = 195/381 (51%), Gaps = 30/381 (7%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V+SE++FAAQ + I +A+TG+NGK+T +L G+ +GGN+G
Sbjct: 84 ERGIAVISEIEFAAQYTDKPI--IAITGSNGKTTTTMLTYHLLKEAGLSVGLGGNIGYSF 141
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKN 141
+E H S P + V +E+SS+Q++ +F P ++++LN+TPDHL+R+ +N
Sbjct: 142 AELVAH------SNPDYYV--LEISSFQLDGIATHFAPHIAMLLNITPDHLDRYNYQFEN 193
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEA---KTAS 198
Y +K + + + ++ + + ++ H+ A + F K E K
Sbjct: 194 YIASKFRIAMNQTANDYLIYDADDEVIADWLRHHKV-AAKLLPFTVKKEVAEGAYLKDNK 252
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
+ +++++ + + G HN N A ++ L V ++L +++ + HR
Sbjct: 253 IYMKIDEKTTEIEVDEISLKGIHNVKNTMAATIAARLL--AVRDQSLRQSLKGFKGADHR 310
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
++ V + + GVT+V+DSKATN+ + L +K V ++GGQ K N ++ L+
Sbjct: 311 LEEV-KVVDGVTYVNDSKATNVNSVFFALDTIKT-PIVWIVGGQDK------GNDYQSLM 362
Query: 319 EPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFA-VANMKDAVNHARRMATNGDAIVLS 376
+ + ++ G + ++ + +P +M++AV A+ A +GD ++LS
Sbjct: 363 PYVQEKVKAIVCLGVDNTPLLRSFAS---VMPNLVETRSMEEAVRLAKHFAASGDTVLLS 419
Query: 377 PGCASFDEFRNFEHRGMVFQE 397
P CASFD F N+EHRG +F+E
Sbjct: 420 PACASFDLFDNYEHRGNMFKE 440
>gi|110639124|ref|YP_679333.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cytophaga
hutchinsonii ATCC 33406]
gi|118595652|sp|Q11RH3.1|MURD_CYTH3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|110281805|gb|ABG59991.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cytophaga
hutchinsonii ATCC 33406]
Length = 450
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 117/397 (29%), Positives = 193/397 (48%), Gaps = 40/397 (10%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + + V+SE++FA + I K +A+TG+NGK+T +L LG
Sbjct: 76 KAPIMKLIRSKAIEVISEIEFAYRHIHPGAKFIAITGSNGKTTTTLLTHHILAQLGYSVG 135
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+GGN+G L+ H K V V+E+SS+Q++ + Y F V+V+LN+TPDH
Sbjct: 136 LGGNIGTSLARQIIH--------EKKDVYVLELSSFQLD--DMYTFKADVAVLLNITPDH 185
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--------- 182
L+R++ +NY +K +F ++ + + + K H + ++
Sbjct: 186 LDRYEYKFENYTASKFRIFQNLTPADYYITYSEDSVIESYKKDHPVDARYVPVSLKQLYS 245
Query: 183 -GAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD 241
GA+ ++ KT VV+ + G+HNY N +AAL+ + IG D
Sbjct: 246 AGAY------SDEKTIQIHALDDTVVT-CNTEEFPLQGKHNYIN-IMAALNA-AVSIGAD 296
Query: 242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG 301
+ ++I+ R PHR++ V I GV +V+DSKATN+++ L +K V+++GG
Sbjct: 297 IHKSIASIKSFRNAPHRLEFVGS-IYGVKFVNDSKATNVDSVWYALDSMKT-PVVLIVGG 354
Query: 302 QAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVN 361
V G + + E L++ H V+ G + + I +M +A+
Sbjct: 355 ---VDKGNDYSQIEALVKEKVH--TVVALGKDNSKVLSGFASMVSEIK--EAHSMVEAIR 407
Query: 362 HARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
A A GD ++LSP CASFD F+N+E RG F+ L
Sbjct: 408 IAHDSAKKGDTVLLSPACASFDLFKNYEDRGTQFRNL 444
>gi|393719279|ref|ZP_10339206.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas
echinoides ATCC 14820]
Length = 377
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 118/380 (31%), Positives = 182/380 (47%), Gaps = 49/380 (12%)
Query: 24 SGKRVMSELDFAAQVIPR--SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+G ++ +++ AQ P K++ VTGTNGKST V+ + +L G+ + +GGN+G P
Sbjct: 37 AGVPIIGDIELFAQARPALPPHKVVGVTGTNGKSTTVSLIDHILQTAGVPSRLGGNIGLP 96
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ E P V V+E+SSYQ+++ C V+V+LN+TPDHL+R+
Sbjct: 97 ILEQ--------EPLPDGGVYVLELSSYQIDLTQTLDC-DVAVLLNITPDHLDRYDGFDA 147
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQ---HLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
YA +K LF+ T ++ G+ + ++ +L I PGV +D
Sbjct: 148 YAASKARLFAMQSATHAAIIGIGDTPSAQIARSLSARAEHLTKIA--PGVCMD------- 198
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
Q + G HN NA A L GV +++ ++ HR
Sbjct: 199 ------------QSRWPSLQGPHNAQNALAAIAVAQAL--GVPEAVIDAALQSFVGLAHR 244
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
M+ V R ++GVT+V+DSKATN E+T L + +LGG+AK ++ +
Sbjct: 245 MERV-RVLRGVTYVNDSKATNPESTAPALAAFG--RIHWILGGKAK------ADDLDACA 295
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
H T G SG + L ++P ++ AV A R A GD ++LSP
Sbjct: 296 PQFGHVVRAYTIGQSGPRFAEILQG---TVPVEQSGDLATAVAAAARNAQPGDTVLLSPA 352
Query: 379 CASFDEFRNFEHRGMVFQEL 398
CASFD+FR+FE RG F+ L
Sbjct: 353 CASFDQFRDFEDRGEQFRRL 372
>gi|434382206|ref|YP_006703989.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brachyspira
pilosicoli WesB]
gi|404430855|emb|CCG56901.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brachyspira
pilosicoli WesB]
Length = 463
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 106/379 (27%), Positives = 199/379 (52%), Gaps = 33/379 (8%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
+V+ E++FA +IP ++VTGT+GK+T V + +++ +A + GN+GN S+
Sbjct: 108 KVIGEIEFAYNLIPDR-NYISVTGTDGKTTTVNLIYSIISSYK-KARLLGNVGNTFSKEV 165
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
S K + V+E+SS+Q+E + F +SV+LN+ DHL+R+K +++Y K
Sbjct: 166 -------ESIEKDEDIVLELSSFQLETVDN-FHSHISVILNIAEDHLDRYKDIEDYFNAK 217
Query: 147 CHLFSHMVNTKLGLL----PFGNQHLNEAIKGH--RFN-LAWIGAFPGVKIDTEAKTASF 199
++ + + +L + N++ NE IK FN L + + + ++
Sbjct: 218 KNITKNQNSNDFLILNYDNSYTNRYYNELIKTKDISFNVLTFSTKYREANLYYNSEDECL 277
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
A + S + K++G HN N + L+ + +I + E ++ + ++ HR+
Sbjct: 278 YYNAEKIFS---IAKRKLLGMHNIENILASVLACIKDNIPI--EYIDKAVNNFQSIEHRL 332
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319
+ V ++I GV +++DSKAT++ A + L + ++++GG+ K G + + +IE
Sbjct: 333 EFV-KEIDGVRYINDSKATSMSAVMSALKSFDKN-IILIMGGRNK---GIDFKPLKSIIE 387
Query: 320 PLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 379
+ ++T S L V+N + I F +A ++A+++A GD ++LSPGC
Sbjct: 388 E-RVKKLILTGEASEDLSSMIDVSNKIIIKDFT-----EAFDYAKKIALKGDTVLLSPGC 441
Query: 380 ASFDEFRNFEHRGMVFQEL 398
ASFD F+N+E RG F+ L
Sbjct: 442 ASFDSFKNYEERGKYFKSL 460
>gi|335044836|ref|ZP_08537859.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
sp. oral taxon 108 str. F0425]
gi|333758622|gb|EGL36179.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
sp. oral taxon 108 str. F0425]
Length = 454
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 113/376 (30%), Positives = 189/376 (50%), Gaps = 29/376 (7%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+ E++ A Q K+ AVTGTNGK+T V+ +G++L + V GN+GNP + A
Sbjct: 97 VIGEIELAYQSCKG--KLCAVTGTNGKTTTVSLIGEILKSQYPDTHVVGNIGNPFTAEAL 154
Query: 88 HCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ V V EVSS+Q+E I + F P VS + N+TPDHL+RHKTMKNY K
Sbjct: 155 DT-------EEQSVTVCEVSSFQLESIVD--FRPNVSAITNITPDHLDRHKTMKNYIAIK 205
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNE--AIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+ + +L + + L + +G + N+ W + K + F
Sbjct: 206 ESIAVNQTEEDSIVLNYMDSELRKFGKKRGLKPNVLWFSSEEEPKEGFFLRGEEFIYKNK 265
Query: 205 GVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
+L + +++++G+HNY N + A+ V L +GV ++ + + + HR++ V
Sbjct: 266 EKEEKLFKTGDLQLLGKHNYEN-VMCAMGV-ALKMGVPMDKIVKVCKKFKPVEHRIEFV- 322
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN-GFEKLIEPLN 322
R+ GV + +DSK TN++A L + G V+L+GG G + + F+ ++
Sbjct: 323 RERSGVRYYNDSKGTNVDAAIQALRAMPGP--VLLIGG------GYDKHVDFDAWVKEFK 374
Query: 323 HH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G + I NG FA +M +AV A GD ++LSP CAS
Sbjct: 375 GRVKYLVLIGETRNQIAACAKKNGFHNLMFA-EDMDEAVKDCAAYADPGDYVLLSPACAS 433
Query: 382 FDEFRNFEHRGMVFQE 397
+ F+++E RG +F++
Sbjct: 434 WGMFKDYEERGRIFKD 449
>gi|88807416|ref|ZP_01122928.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
sp. WH 7805]
gi|88788630|gb|EAR19785.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
sp. WH 7805]
Length = 462
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 118/390 (30%), Positives = 191/390 (48%), Gaps = 29/390 (7%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L G RV E+ A + R I + +TGTNGK+TV + +L H G+EA + GN
Sbjct: 86 LHALRAHGFRVRGEMSVAWDAL-RGIPWIGITGTNGKTTVTHLLQHVLAHAGLEAPMAGN 144
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G +E A L ++PK V+E+SSYQ+E + P + + LTPDHLERH
Sbjct: 145 VGYSAAELALEV--LQGTRPKPDWVVMEMSSYQIEAAAE-VSPRIGIWTTLTPDHLERHG 201
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH--RFNLAWIGAFPGVKIDTEAK 195
T++ Y K L +++ +L + + + GH R + W+ E
Sbjct: 202 TIEAYRAIKRGLLE---RSEIPVLNADDADIRQHC-GHWSRSCIRWVSCG---DHSPEGG 254
Query: 196 TASFEVPAVGVVSQLQLH-----NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
V A G VS+ + H ++ + G HN N + ++ L GV + + +
Sbjct: 255 NPQLTVNAQGWVSRGEQHLFPADSLPLPGEHNRQN--MLLVTAAALAAGVSASTIEAALR 312
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
PHR++ + + G+ +DSKATN +A GL ++ V+L GGQ K +
Sbjct: 313 CFTGVPHRLEPLG-SVGGIPVFNDSKATNYDAAAVGLRSVQA-PVVLLAGGQTKK---GD 367
Query: 311 SNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN- 369
+ + KLI+ + V+ FG + + +G + P A++ AV+ A +A N
Sbjct: 368 AVPWLKLIQ--SQVAGVVLFGEGAGELADLIETSGFAGPMIHCADLDSAVSQALSLARNC 425
Query: 370 -GDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
++++LSP CASFD++ NFE RG F++L
Sbjct: 426 QANSVLLSPACASFDQYPNFEARGDHFRQL 455
>gi|237709499|ref|ZP_04539980.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
9_1_42FAA]
gi|265754705|ref|ZP_06089757.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
3_1_33FAA]
gi|423230229|ref|ZP_17216633.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides dorei
CL02T00C15]
gi|423241043|ref|ZP_17222157.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides dorei
CL03T12C01]
gi|423243941|ref|ZP_17225016.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides dorei
CL02T12C06]
gi|229456555|gb|EEO62276.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
9_1_42FAA]
gi|263234819|gb|EEZ20387.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
3_1_33FAA]
gi|392631738|gb|EIY25707.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides dorei
CL02T00C15]
gi|392643105|gb|EIY36863.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides dorei
CL03T12C01]
gi|392643459|gb|EIY37209.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides dorei
CL02T12C06]
Length = 444
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 112/391 (28%), Positives = 192/391 (49%), Gaps = 48/391 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G ++SE++FA + + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 83 LKAQGTPIISEIEFAGRYT--NAKMICITGSNGKTTTTSLIYHIFKKAGMNVGLAGNIGQ 140
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L A ++ + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 141 SL--------AYQVAEYNYDYYVIELSSFQLD--NMYKFHANIAVLMNITPDHLDRYDHQ 190
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + P + L++ I GH + A G E
Sbjct: 191 MQNYVDAKFRIIQNQTPDDAFIFWNDDPIIQRELHKYGIHGHYYPFAERKE-EGTAAYVE 249
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
F P + ++ + + G HN N+ A +S L G+ E + + +
Sbjct: 250 QDKVYFTEP---IAFNMEQEELALTGTHNLFNSMAAGISA-NL-AGIRKECIREALGDFK 304
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
HR++ V R ++GV +++DSKATN+ + L +K K +++LGG+ K G + N
Sbjct: 305 GVEHRLEKVCR-VRGVDYINDSKATNVNSCWYALQSMKT-KTILILGGKDK---GNDYNE 359
Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGL-------SIPCFAVANMKDAVNHARRM 366
L++ +C LI+ L N L +P V +MKDAV+ A RM
Sbjct: 360 IADLVK----EKCT-------GLIYMGLHNEKLHAFFDKFGLPVADVQSMKDAVDAAYRM 408
Query: 367 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
A G+ ++LSP CASFD F+++E RG F+E
Sbjct: 409 AKKGETVLLSPCCASFDLFKSYEDRGEQFKE 439
>gi|333376752|ref|ZP_08468488.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dysgonomonas mossii
DSM 22836]
gi|332885965|gb|EGK06209.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dysgonomonas mossii
DSM 22836]
Length = 444
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 112/390 (28%), Positives = 199/390 (51%), Gaps = 49/390 (12%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G ++SE++FA + S K++ +TG+NGK+T + + +L G+ +GGN+G
Sbjct: 84 EKGIPILSEMEFAKRYT--SAKMICITGSNGKTTTTSLIYHILKSAGLNVGLGGNIG--- 138
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-TMK 140
A ++ F V+E+SS+Q+E N Y F ++++LN+TPDHL+R+ M+
Sbjct: 139 -----RSFARQVAEDNFDYYVLELSSFQLE--NMYSFKADIAILLNITPDHLDRYDHDMQ 191
Query: 141 NYALTKCHLFSHMVNTKLGLL----PFGNQHLNEAI-KGHRFNLA--WIG---AFPG--- 187
Y K + + + P ++ + + + KG ++ A +G A+P
Sbjct: 192 KYVDAKMRIVQNQTEEDAFIFWEEDPIVSKEIQKLVSKGKQYTFADHKVGNAIAYPENNE 251
Query: 188 VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNS 247
+KIDT P + + L + + G HN +N+ + ++ LDI E L
Sbjct: 252 IKIDT---------PKSIFIMKEDL--LALEGTHNLYNSLASGITAKLLDITD--ENLRH 298
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLN 307
++ + HR++ V R ++G+ +++DSKATN+ + L +K K V++LGG K
Sbjct: 299 SLSDFQGVEHRLEKVAR-VRGIQFINDSKATNVNSCWYALQSMKT-KVVLILGGTDK--- 353
Query: 308 GQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA 367
G + E+L++ + R ++ G + K +G ++MKDAV + +A
Sbjct: 354 GNDYTEIEQLVK--DKVRALVFLGVDNSKLHKFF--DGKIDNIVDTSSMKDAVEKSYALA 409
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
GD ++LSP CASFD F+N+E RG F+E
Sbjct: 410 QEGDTVLLSPCCASFDLFQNYEDRGDQFKE 439
>gi|213963298|ref|ZP_03391555.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Capnocytophaga
sputigena Capno]
gi|213954160|gb|EEB65485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Capnocytophaga
sputigena Capno]
Length = 447
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 108/390 (27%), Positives = 199/390 (51%), Gaps = 48/390 (12%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G R++SE++FA++ S+ I+ +TG+NGK+T Q+ G++ +GGN+G
Sbjct: 84 EKGIRIISEIEFASEYT-HSL-IVGITGSNGKTTTTLLTHQIFKDAGLQVGLGGNIGYSF 141
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKN 141
+E + + P + V +E+SS+Q++ ++F P ++V+LN+TPDHL+R+ +N
Sbjct: 142 AEL------VATENPPYYV--LEISSFQLD-GIEHFAPHIAVLLNITPDHLDRYDYKFEN 192
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI----------GAF---PGV 188
Y +K + + + + + E ++ H + I GAF +
Sbjct: 193 YIASKFRIAMNQTENDYLIYDADDPVIEEWLQNHILKVKLIPFSIEKELPYGAFLKDNKI 252
Query: 189 KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
I E +TA +++ + + + G+HN N A SV + + +L +
Sbjct: 253 HIMLENQTAE--------TTEIDVEEISLRGKHNIKNTMAA--SVAARLVNIRNNSLRDS 302
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG 308
++ + HR++ V + ++GVT+V+DSKATN+ + L +K V ++GGQ K
Sbjct: 303 LKGFKGVDHRLEEV-KVVEGVTYVNDSKATNVNSVYFALDTIKT-PIVWIVGGQDK---- 356
Query: 309 QESNGFEKLIEPLNHHR--CVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRM 366
N + L+ P H + ++ G I ++ N+G + +M +AV A++
Sbjct: 357 --GNDYNALL-PYVHEKVKAIVCLGVDNEPILRSFSNSGKEM--IETQSMDEAVRIAKKF 411
Query: 367 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
AT GD ++LSP CASFD F+++E RG F+
Sbjct: 412 ATEGDTVLLSPACASFDLFKSYEDRGDQFK 441
>gi|392552613|ref|ZP_10299750.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
spongiae UST010723-006]
Length = 435
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 119/384 (30%), Positives = 185/384 (48%), Gaps = 58/384 (15%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+ +++ A++ +++ AVTG+NGKS+VVT +L G + + GN+G P+
Sbjct: 93 GVEVIGDVELFARINTKAV--YAVTGSNGKSSVVTLTRDVLKQAGYKVALAGNIGTPV-- 148
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
L + V+E+SS+Q+E + C S VLN++ DH++R+ ++ +YA
Sbjct: 149 -------LDVIDQDYDCYVLELSSFQLETTHSLVCEA-SCVLNISEDHMDRYDSLGDYAY 200
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K + H +K ++ F + L PGV + +
Sbjct: 201 AKQRIHLH---SKHVVVNFDDA------------LTHCEQTPGVSFGAQQGDYTISQQCF 245
Query: 205 GVVSQ--LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP------- 255
V + L +KV+G HN NA L+V+ L +E L +++ +T
Sbjct: 246 NVHGKQMLSTDELKVIGLHNQLNA----LAVMAL-----LENLKLPVDVFKTAFNQFSGL 296
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL-KGHKCVILLGGQAKVLNGQESNGF 314
HR Q+V D GV +V+DSKATN+ AT L L KG ++L GG K G + +
Sbjct: 297 AHRCQLVCED-NGVLYVNDSKATNVGATQAALTSLAKGKNIILLAGGVGK---GADFSPL 352
Query: 315 EKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 374
+ IE +ITFG I L N + F +DAV A+ +A +GD ++
Sbjct: 353 KVDIETTVKQ--LITFGKDKAQIA-ALCENAIQTSSF-----EDAVLQAKAIAVSGDIVL 404
Query: 375 LSPGCASFDEFRNFEHRGMVFQEL 398
L+P CASFD F +FEHRG VF EL
Sbjct: 405 LAPACASFDMFNSFEHRGDVFVEL 428
>gi|329118771|ref|ZP_08247469.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
bacilliformis ATCC BAA-1200]
gi|327465118|gb|EGF11405.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
bacilliformis ATCC BAA-1200]
Length = 450
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 125/387 (32%), Positives = 193/387 (49%), Gaps = 38/387 (9%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A + R KI+A+TG+NGK+TV + VG + G++ V GN+G P
Sbjct: 94 QNGGRVLGDIEIFAHIANRRGDKIIAITGSNGKTTVTSLVGHLCEKCGLDTVVAGNIGTP 153
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA K V V+E+SS+Q+E + P+ + VLN++ DHL+R+ + +
Sbjct: 154 VLEAEMQ-----RGGKKAGVWVLELSSFQLE-NTESLRPSAAAVLNISEDHLDRYDDLLD 207
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF-- 199
YA TK +F + G Q LN R A A GVK + K A +
Sbjct: 208 YAHTKDKIFRGV----------GVQVLNADDALCR---AMKRAGRGVKWFSLEKQADYWL 254
Query: 200 --EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
E + VS ++ + + ++ A V A L +G+ E L I+ + PH
Sbjct: 255 ERETGRLKAVSDDLMNTTDIPLQGLHNAANVMAAVALCEAVGLPREELVKHIQTFKGLPH 314
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R++ + + GV ++DDSK TN+ AT + L+ +LGG K GQ+ F L
Sbjct: 315 RVEKIG-EKNGVVFIDDSKGTNVGATAAAISGLQ-SPLFAILGGLGK---GQD---FTPL 366
Query: 318 IEPLNHH-RCVITFGYSGVLIWKTLVNNGLS-IPCFAVANMKDAVNHARRMATNGDAIVL 375
+ L + V+ G I + L GL+ I C A +++AV A A +GD ++L
Sbjct: 367 AQVLRGKVKAVLLIGRDAPQIRRDLAGAGLNLIDC---ATLQEAVQTAYAQAQSGDIVLL 423
Query: 376 SPGCASFDEFRNFEHRGMVFQELAFSA 402
SP CAS D F+N+ HR VF E AF A
Sbjct: 424 SPACASMDMFQNYAHRSQVFAE-AFQA 449
>gi|212692810|ref|ZP_03300938.1| hypothetical protein BACDOR_02309 [Bacteroides dorei DSM 17855]
gi|345514543|ref|ZP_08794054.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides dorei
5_1_36/D4]
gi|212664599|gb|EEB25171.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
dorei DSM 17855]
gi|229436645|gb|EEO46722.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides dorei
5_1_36/D4]
Length = 444
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 112/391 (28%), Positives = 192/391 (49%), Gaps = 48/391 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G ++SE++FA + + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 83 LKAQGTPIISEIEFAGRYT--NAKMICITGSNGKTTTTSLIYHIFKKAGMNVGLAGNIGQ 140
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L A ++ + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 141 SL--------AYQVAEYNYDYYVIELSSFQLD--NMYKFHANIAVLMNITPDHLDRYDHQ 190
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + P + L++ I GH + A G E
Sbjct: 191 MQNYVDAKFRIIQNQTPDDAFIFWNDDPVIQRELHKYGIHGHYYPFAERKE-EGTAAYVE 249
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
F P + ++ + + G HN N+ A +S L G+ E + + +
Sbjct: 250 QDKVYFTEP---IAFNMEQEELALTGTHNLFNSMAAGISA-NL-AGIRKECIREALGDFK 304
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
HR++ V R ++GV +++DSKATN+ + L +K K +++LGG+ K G + N
Sbjct: 305 GVEHRLEKVCR-VRGVDYINDSKATNVNSCWYALQSMKT-KTILILGGKDK---GNDYNE 359
Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGL-------SIPCFAVANMKDAVNHARRM 366
L++ +C LI+ L N L +P V +MKDAV+ A RM
Sbjct: 360 IADLVK----EKCT-------GLIYMGLHNEKLHAFFDKFGLPVADVQSMKDAVDAAYRM 408
Query: 367 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
A G+ ++LSP CASFD F+++E RG F+E
Sbjct: 409 AKKGETVLLSPCCASFDLFKSYEDRGEQFKE 439
>gi|451823281|ref|YP_007459555.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451776081|gb|AGF47122.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 495
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 116/403 (28%), Positives = 198/403 (49%), Gaps = 61/403 (15%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
R++ +L PR I+A+TGTNGK+TV + +L+++G+ GN+G P+
Sbjct: 114 RILDDLYKDINYCPR---IIAITGTNGKTTVTSLCHYILHNIGVSVCKAGNIGPPVITVL 170
Query: 87 FHCIA---LPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
+ LP V VVE+SS+Q+ K VSVVLNL DH++ H +++Y
Sbjct: 171 MDLLKANKLP------DVWVVELSSFQL-FNVKSLKIEVSVVLNLDFDHIDWHGDIESYW 223
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203
+K + + TK L+ + + E K + ++ G ID +K+ F +
Sbjct: 224 DSKISIINF---TKTSLINRNDPKIVEKSKRLKDDIYSFG------IDKPSKSGCFGMVL 274
Query: 204 VG-----VVSQLQLHNM------------------------KVMGRHNYHNAAVAALSVL 234
G V+ +L+ N+ K+ G HNY N +AAL ++
Sbjct: 275 YGGNKWLVLYKLETDNLNLINDADSYFYDNSLVYLLKADLLKIKGDHNYANV-LAALQLI 333
Query: 235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHK 294
I E + + R HR++ + ++ GV ++DDSKATN+ AT L K
Sbjct: 334 SF-ITPITEKIIDVLCHYRGEHHRIEFI-SEVNGVKYIDDSKATNISATIAALRSCCNKK 391
Query: 295 CVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVA 354
+++ GG K GQ+ + I + + + +I G S I++ + + +IPCF V
Sbjct: 392 AILIAGGLGK---GQDFSQLRDAI--VEYTKSIILLGSSKFDIFEIIKDT--NIPCFFVD 444
Query: 355 NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
+M++AV + ++AT GD ++LSP C+S D F++++HRG +F +
Sbjct: 445 SMEEAVLKSFQIATPGDIVLLSPACSSLDMFKDYDHRGKIFAK 487
>gi|395497067|ref|ZP_10428646.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
sp. PAMC 25886]
Length = 448
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 116/362 (32%), Positives = 180/362 (49%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLNDNVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNL--AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E + F L AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLIGEGLPCWTFGLNKPDFKAF-GLREENGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN A A LG +G+ +A+ S + HR Q V RD+ GV + +DSKAT
Sbjct: 272 GAHN--QANALAALALGHAVGLPFDAMLSALRSFAGLEHRCQWV-RDLDGVGYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D++G K V++ GG K + F+ L P+ H R V+ G
Sbjct: 329 NVGAALAAIEGLGADIQG-KVVLIAGGDGKGAD------FKDLKGPVAAHCRAVVLMGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
LI L G ++P ++ DA+ +R +A GD ++LSP CASFD F+N+E RG
Sbjct: 382 SGLIADAL---GDAVPQVRTQSLDDAIAQSRSLAQPGDVVLLSPACASFDMFKNYEERGQ 438
Query: 394 VF 395
+F
Sbjct: 439 LF 440
>gi|399002527|ref|ZP_10705213.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM18]
gi|398124967|gb|EJM14463.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM18]
Length = 448
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 119/365 (32%), Positives = 180/365 (49%), Gaps = 49/365 (13%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQFVV------ 214
Query: 165 NQH--LNEAIKGHR-------FNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM 215
N+H L+ + G N AF G++ + K +FE + + + +
Sbjct: 215 NRHDALSRPLMGEGQPCWTFGLNKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVREL 268
Query: 216 KVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDS 275
KV G HN NA A G +G+ +A+ S + HR Q V RD+ GV + +DS
Sbjct: 269 KVRGAHNQSNALAALAL--GHAVGLPFDAMLSALRTFAGLEHRCQWV-RDLDGVGYYNDS 325
Query: 276 KATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITF 330
KATN+ A + D+ G K V++ GG K G E F+ L +P+ + R VI
Sbjct: 326 KATNVGAALAAIEGLGADIDG-KLVLIAGGDGK---GAE---FKDLRDPVAANCRAVILM 378
Query: 331 GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEH 390
G I + + G ++P V ++ +AV R +A GDA++LSP CASFD F+N+E
Sbjct: 379 GRDSDKIGEAV---GDAVPLIRVGSLIEAVEQCRAIAEKGDAVLLSPACASFDMFKNYED 435
Query: 391 RGMVF 395
RG F
Sbjct: 436 RGHQF 440
>gi|398876087|ref|ZP_10631247.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM67]
gi|398882466|ref|ZP_10637434.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM60]
gi|398199008|gb|EJM85958.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM60]
gi|398205379|gb|EJM92163.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM67]
Length = 448
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 117/362 (32%), Positives = 181/362 (50%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL + ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLRDDIELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L+ AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLMGEGQPCWTFGLSKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S++ HR Q V RD+ GV++ +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSSLRTFAGLEHRCQWV-RDLDGVSYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D+ G K V++ GG K G E F L +P+ + R VI G
Sbjct: 329 NVGAALAAIEGLGADIDG-KVVLIAGGDGK---GAE---FNDLRDPVAANCRAVILMGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
I + + G ++P A++ +AV R A GD ++LSP CASFD F+N+E RG
Sbjct: 382 SDKIGEAI---GDAVPLIRAASLVEAVQQCRAAAQPGDVVLLSPACASFDMFKNYEDRGH 438
Query: 394 VF 395
F
Sbjct: 439 QF 440
>gi|398869798|ref|ZP_10625155.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM74]
gi|398210210|gb|EJM96862.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM74]
Length = 448
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 117/362 (32%), Positives = 182/362 (50%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDIELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L+ AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLMGEGQPCWTFGLSKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S++ HR Q V RD++GV + +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSSLRTFAGLEHRCQWV-RDLEGVGYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D+ G K V++ GG K G E F+ L +P+ + R V+ G
Sbjct: 329 NVGAALAAIEGLGADIDG-KVVLIAGGDGK---GAE---FKDLRDPVAANCRAVVLMGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
I + + G ++P VA++ +AV R A GD ++LSP CASFD F+N+E RG
Sbjct: 382 SDKIGEAI---GDAVPLIRVASLVEAVEQCRAAAQPGDVVLLSPACASFDMFKNYEDRGH 438
Query: 394 VF 395
F
Sbjct: 439 QF 440
>gi|269468117|gb|EEZ79827.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [uncultured SUP05
cluster bacterium]
Length = 434
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 124/375 (33%), Positives = 192/375 (51%), Gaps = 47/375 (12%)
Query: 37 QVIPRSIK--ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPS 94
++ R +K ++ +TG+NGKSTV +G M+ + + VGGN+G P A C+
Sbjct: 93 ELFSRFVKAPVIGITGSNGKSTVTQLLGDMITNSDKKVAVGGNIGKP----ALDCL---- 144
Query: 95 SKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV 154
+ V+E+SSYQ++ N+ T VVLN+TPDHL+R+ + +Y +K L+ +
Sbjct: 145 -DDQIDYYVLELSSYQLDYTNQLKLLT-GVVLNITPDHLDRYDSFDDYTDSKLSLYRYCQ 202
Query: 155 NTKLGLLPFGNQHLNEAIKGHRFNLAWIG-AFPGVKIDTEAKT---ASFEVPAVGVVSQL 210
+ + +L+E I + N G P D T + + + VV +
Sbjct: 203 DLVV--------NLDEVIVPKKNNAKHFGIDMPKRADDFGTVTCHGSCYLIKGDDVV--M 252
Query: 211 QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVT 270
+ M+++G HN N +AAL+ LG IG+ VE + +I+ + HR++ V + QGV
Sbjct: 253 SVSEMQLIGEHNVANM-LAALA-LGDQIGLSVELMAQSIKNFKGLEHRLEWVAKK-QGVD 309
Query: 271 WVDDSKATNLEATCTGLMDL--KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVI 328
+ +DSKATN +T L L K V++ GG AK ++ + KLI+
Sbjct: 310 YYNDSKATNSISTIQALKALIDKHENIVLIAGGIAK---EEDYSVMFKLIDE-------N 359
Query: 329 TFGYSGVLIWKTLVNNGLSI--PCFAVAN-MKDAVNHARRMATNGDAIVLSPGCASFDEF 385
FG VLI ++ + G S+ P + A M +AVN A M +G IVLSP CASFD F
Sbjct: 360 VFGV--VLIGQSAADFGQSLNRPQVSYAQTMSEAVNLASGMLNDG-VIVLSPACASFDMF 416
Query: 386 RNFEHRGMVFQELAF 400
NFE RG F++ F
Sbjct: 417 ANFEERGQAFKDQVF 431
>gi|440738884|ref|ZP_20918406.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
fluorescens BRIP34879]
gi|447915295|ref|YP_007395863.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
poae RE*1-1-14]
gi|440380256|gb|ELQ16823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
fluorescens BRIP34879]
gi|445199158|gb|AGE24367.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
poae RE*1-1-14]
Length = 448
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 116/362 (32%), Positives = 179/362 (49%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGVP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E + V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTHD-LGAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTE--AKTASFEVPAVGVVSQLQLHNMKVM 218
+ E + F L F G I E K +FE + + + +K+
Sbjct: 221 ---SRPLMGEGLPCWTFGLGKPD-FKGFGIREENGEKYLAFEFEHL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ +++ HR Q V RD+ GV++ +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLASLRTFGGLEHRCQWV-RDLDGVSYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D+ G K V++ GG K + F+ L P+ H R V+ G
Sbjct: 329 NVGAALAAIEGLGADIDG-KLVLIAGGDGKGAD------FKDLKAPVAAHCRAVVLMGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
LI L N+ + + A++ DA+ + +A GDA++LSP CASFD F+N+E RG
Sbjct: 382 SDLIAAALGNDVVQVRA---ASLDDAIAQCKALAQPGDAVLLSPACASFDMFKNYEERGQ 438
Query: 394 VF 395
+F
Sbjct: 439 LF 440
>gi|307244134|ref|ZP_07526252.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Peptostreptococcus stomatis DSM 17678]
gi|306492505|gb|EFM64540.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Peptostreptococcus stomatis DSM 17678]
Length = 454
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 119/391 (30%), Positives = 199/391 (50%), Gaps = 35/391 (8%)
Query: 18 LACLLQSGKRVMSELDFA-AQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG 76
L L + GK V+SE++ A + ++IK + +TGTNGK+T + VG++ G++ +V G
Sbjct: 84 LVKLREMGKEVISEVELAYREGQEKNIKFIGITGTNGKTTTTSIVGEICKEAGLDTYVVG 143
Query: 77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH 136
N+GNP A A P + V V+E+SS+Q+E F P VS VLNLT DH+ RH
Sbjct: 144 NIGNPAISAVEE--AQPGA-----VLVIELSSFQLEAVYD-FRPEVSTVLNLTEDHMNRH 195
Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPF--------GNQHLNEAIKGHRFNLAWIGAFPGV 188
TM+NYA K ++F+ + +L + GN + R + G +
Sbjct: 196 HTMENYAKAKANIFAKQTPESVCVLNYDDPITRDMGNTCQARPVYFSRQSRPEAGIYLDD 255
Query: 189 KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
+ A EV V ++ + G HN N ++AA+ L L G+D E +
Sbjct: 256 NKNIIAVKDGREVEIVNA------EDLSLPGGHNLEN-SMAAIG-LCLHFGIDKEIIKKV 307
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG 308
+ + HR++ V+ + GV +V+DSK TN ++T + K +++ GG K
Sbjct: 308 LTTFKAVEHRLEYVNT-VNGVVYVNDSKGTNPDSTIKAVQSYK-TPIILIAGGYDK---- 361
Query: 309 QESNGFEKLIE-PLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA 367
+ F +L + +N+ R V+ G + LI T G+ + + ++K+AV A ++A
Sbjct: 362 --GSDFRELFDIAVNYVRTVLVIGQTADLIADTAFKAGIK-EIYKLDSLKEAVIKASQIA 418
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
D ++LSP CAS+ ++N+E RG F+++
Sbjct: 419 DKDDVVLLSPACASWGMYKNYEERGQEFKDI 449
>gi|303246305|ref|ZP_07332585.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
fructosovorans JJ]
gi|302492368|gb|EFL52240.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
fructosovorans JJ]
Length = 441
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 120/395 (30%), Positives = 185/395 (46%), Gaps = 48/395 (12%)
Query: 6 LFLLEFQLKATGLACLLQS--GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQ 63
+ +L ++A GLA L + G +V+SEL+ A+ + + I+AVTG+NGK+T V V
Sbjct: 78 MVVLSPGIRAAGLADCLAACPGAQVLSELELASWFV--TEPIVAVTGSNGKTTTVMLVSH 135
Query: 64 MLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVS 123
+L G + F GGN+G PLSE + P V V+EVSS+Q+++ K F P V+
Sbjct: 136 LLEAAGRKVFTGGNIGTPLSEYVL------AGDPA-DVVVLEVSSFQLQL-VKSFRPKVA 187
Query: 124 VVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG 183
V+LN +P+HL+ H ++ Y K ++F+ +LP + + +A+ G F A +
Sbjct: 188 VLLNFSPNHLDWHADLEEYLSAKLNIFAAQRPGDTAILP---RDMRDALAGRSFTRADVT 244
Query: 184 AFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVE 243
F + F P ++ G HN N A L+ GV E
Sbjct: 245 WF--------EPSGRFVCP-------------RLAGAHNRQNMEAAFLAT--QPFGVTEE 281
Query: 244 ALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQA 303
E PHR+QI+ + GV +VDDSKAT + A L +L GG
Sbjct: 282 IAKVAFERFAPAPHRLQIIG-EKGGVLFVDDSKATTVAAMEAALRSFD-RPVRLLCGG-- 337
Query: 304 KVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHA 363
V G + L++ V FG +G +++ +P F +K AV
Sbjct: 338 -VFKGGDLAALSPLLK--ERVAAVGLFG-AGREVFEAAWAG--QVPLFHEPTLKPAVTRL 391
Query: 364 RRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
A GD ++LSP ASFD + ++ RG FQ++
Sbjct: 392 FAEARPGDVVLLSPATASFDLYDGYKARGRDFQDI 426
>gi|387892152|ref|YP_006322449.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
fluorescens A506]
gi|387160876|gb|AFJ56075.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
fluorescens A506]
Length = 448
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 116/362 (32%), Positives = 178/362 (49%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGVP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E + V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTHD-LGAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGAKQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTE--AKTASFEVPAVGVVSQLQLHNMKVM 218
+ E + F L F G I E K +FE + + + +K+
Sbjct: 221 ---SRPLIGEGMPCWTFGLGKPD-FKGFGIREENGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ +++ HR Q V RD+ V++ +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLASLRTFAGLEHRCQWV-RDLNDVSYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D+ G K V++ GG K + F+ L P+ H R V+ G
Sbjct: 329 NVGAALAAIEGLGADIDG-KLVLIAGGDGKGAD------FKDLKTPVAAHCRAVVLMGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
LI L G ++P A++ DA+ + +A GDA++LSP CASFD F+N+E RG
Sbjct: 382 SDLIAAAL---GDAVPQVRAASLDDAIAQCKALAQPGDAVLLSPACASFDMFKNYEERGQ 438
Query: 394 VF 395
+F
Sbjct: 439 LF 440
>gi|300869645|ref|YP_003784516.1| hypothetical protein BP951000_0006 [Brachyspira pilosicoli 95/1000]
gi|300687344|gb|ADK30015.1| hypothetical protein BP951000_0006 [Brachyspira pilosicoli 95/1000]
Length = 465
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 106/382 (27%), Positives = 196/382 (51%), Gaps = 39/382 (10%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
+V+ E++FA +IP ++VTGT+GK+T V + +++ +A + GN+GN S+
Sbjct: 110 KVIGEIEFAYNLIPDR-NYISVTGTDGKTTTVNLIYSIISSYK-KARLLGNVGNTFSKEV 167
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
S K + V+E+SS+Q+E + F +SV+LN+ DHL+R+K +++Y K
Sbjct: 168 -------ESIEKDEDIVLELSSFQLETVDN-FHSHISVILNIAEDHLDRYKDIEDYFNAK 219
Query: 147 CHLFSHMVNTKLGLL----PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--- 199
++ + + +L + N + NE IK +F + T+ K A+
Sbjct: 220 KNITKNQNSNDFLILNYDNSYTNSYYNELIKTKDI------SFNVLTFSTKNKEANLYYN 273
Query: 200 ---EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
E + K++G HN N + L+ + +I + E ++ + ++
Sbjct: 274 SEDECLYYNGEKIFSIAKRKLLGMHNIENILASVLACIKDNIPI--EYIDKAVNNFKSIE 331
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK 316
HR++ V ++I GV +++DSKAT++ A + L + ++++GG+ K G + +
Sbjct: 332 HRLEFV-KEIDGVRYINDSKATSMSAVMSALKSFDKN-IILIMGGRNK---GIDFKPLKS 386
Query: 317 LIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLS 376
+IE + ++T S L V+N + I F +A ++A+++A GD ++LS
Sbjct: 387 IIEE-RVKKLILTGEASEDLSSMIDVSNKIIIKDFT-----EAFDYAKKIAVKGDTVLLS 440
Query: 377 PGCASFDEFRNFEHRGMVFQEL 398
PGCASFD F+N+E RG F+ L
Sbjct: 441 PGCASFDSFKNYEERGKYFKSL 462
>gi|320106152|ref|YP_004181742.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Terriglobus
saanensis SP1PR4]
gi|319924673|gb|ADV81748.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Terriglobus
saanensis SP1PR4]
Length = 452
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 186/378 (49%), Gaps = 33/378 (8%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++ E++ A++ + S+ +A+TG+NGK+T + +G++L G+ VGGN+G P+ E
Sbjct: 92 GVEMIGEVELASRFLNGSV--VAITGSNGKTTTTSLIGEILRGAGVPTLVGGNIGLPVVE 149
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
+ + +V+E+SS+Q+E + F P ++VVLN+TPDHL+RH T + YA
Sbjct: 150 -------MVAESTDTTWSVLEISSFQLET-VETFAPKIAVVLNITPDHLDRHGTFEKYAE 201
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFE-VPA 203
K + +L ++ + + W +K S +P
Sbjct: 202 AKTRITEMQTPADFLVLNAEDKPTQMVAAKTKAQIFWFSPRRPIKQGAFVHGDSILFLPR 261
Query: 204 VGVVSQ--LQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
G ++ + + + ++G HN N AAV A + GV E + + + HR+
Sbjct: 262 EGGKAEPVMPVSEIPLVGAHNVENVLAAVCACRL----AGVSSEKIREGVRGFKAVDHRL 317
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGF--EKL 317
Q V ++ GV + +DSKATN++AT L +G+ +++LGG+ K + E N E++
Sbjct: 318 QFVA-EVAGVKYYNDSKATNVDATAKALASFEGN-VLLILGGKDKGSDYTELNDLLRERV 375
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
+ V T G + I L + ++ AV A A GD ++L+P
Sbjct: 376 V-------TVYTIGSAAEKIETQLAG---VMTLKHAETLERAVALATEDAKAGDTVLLAP 425
Query: 378 GCASFDEFRNFEHRGMVF 395
CASFD+F ++EHRG F
Sbjct: 426 ACASFDQFESYEHRGREF 443
>gi|399008629|ref|ZP_10711099.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM17]
gi|398116065|gb|EJM05836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM17]
Length = 448
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 117/364 (32%), Positives = 180/364 (49%), Gaps = 47/364 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y HL H + + F
Sbjct: 162 ELSSFQLETTDQ-LGAEVATVLNISEDHMDRYSGLPAY-----HLAKHRIFRGARQVVFN 215
Query: 165 NQH------LNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
Q + E + F L+ AF G++ + K +FE + + + +K
Sbjct: 216 RQDALTRPLIGEGLPCWTFGLSKPDFKAF-GLREENGEKYLAFEFQNL-----MPVRELK 269
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
+ G HN NA A G +G+ +A+ S + HR Q V RD+ GV + +DSK
Sbjct: 270 IRGAHNQSNALAALAL--GHAVGLPFDAMLSALRTFAGLEHRCQWV-RDLDGVGYYNDSK 326
Query: 277 ATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFG 331
ATN+ A + D++G K V++ GG K G E F+ L +P+ + R VI G
Sbjct: 327 ATNVGAALAAIEGLGADIEG-KIVLIAGGDGK---GAE---FKDLRDPVAANCRAVILMG 379
Query: 332 YSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 391
I + + G ++P V ++ DAV R A +GD ++LSP CASFD F+N+E R
Sbjct: 380 RDSDKIGEAI---GDAVPLIRVGSLVDAVAQCRAAAQSGDVVLLSPACASFDMFKNYEDR 436
Query: 392 GMVF 395
G F
Sbjct: 437 GHQF 440
>gi|343500667|ref|ZP_08738557.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
tubiashii ATCC 19109]
gi|418477397|ref|ZP_13046530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
tubiashii NCIMB 1337 = ATCC 19106]
gi|342820029|gb|EGU54860.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
tubiashii ATCC 19109]
gi|384575137|gb|EIF05591.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
tubiashii NCIMB 1337 = ATCC 19106]
Length = 440
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 130/419 (31%), Positives = 202/419 (48%), Gaps = 73/419 (17%)
Query: 5 WLFLLEFQLKATGLACLLQSGKRVMS---------ELDFAAQVIPRSIKILAVTGTNGKS 55
WL + + G+A L ++V++ EL FA QV + ++A+TG+NGKS
Sbjct: 67 WLMAADLVVTNPGIALALPEIEQVINAKILVVGDIEL-FAWQV---NKPVIAITGSNGKS 122
Query: 56 TVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPN 115
TV + GQ+ G++ VGGN+G P AL + + V+E+SS+Q+E +
Sbjct: 123 TVTDWTGQVAQATGLKVGVGGNIGVP---------ALDLLRQDADLYVLELSSFQLETTS 173
Query: 116 KYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQHLNE 170
P + LNL+ DH++R++ M++Y K +F+H +VN P +L E
Sbjct: 174 S-LAPRAAAFLNLSEDHMDRYQGMEDYRQAKLRIFNHASACIVNADDRATYPEQASNLVE 232
Query: 171 AI--KGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAV 228
+ RF+L + ID + AS ++ ++GRHN NA V
Sbjct: 233 FSLNQATRFSLLEHEKTEYLAIDGKPICAS--------------SDLSLVGRHNVANALV 278
Query: 229 --AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTG 286
A L+ G+D+ + AL S + HR Q+V D QGV WV+DSKATN+ +T
Sbjct: 279 VLALLTEAGVDVAKGLSALKSYNGL----THRCQVV-ADNQGVKWVNDSKATNVASTMAA 333
Query: 287 L--MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNN 344
L ++L+G K +L+GG K G + + +++ LN C FG G
Sbjct: 334 LAGLELEG-KLYLLVGGVGK---GADFSELAPILKSLNVQLCC--FGEDGEQF------- 380
Query: 345 GLSIPCFAVA----NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
+P + A M + + ++GD ++LSP CASFD+F NF RG F ELA
Sbjct: 381 ---MPLHSSAKRFDTMHEIIKWVATQVSSGDMVLLSPACASFDQFNNFMARGDAFTELA 436
>gi|374296029|ref|YP_005046220.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
clariflavum DSM 19732]
gi|359825523|gb|AEV68296.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
clariflavum DSM 19732]
Length = 464
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 108/389 (27%), Positives = 191/389 (49%), Gaps = 34/389 (8%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
++G +V SE++ ++ P +I AVTG++GK+T T + +ML G ++GGN+G PL
Sbjct: 99 RNGSQVTSEMEVFFELCPA--QIFAVTGSDGKTTTTTLIYKMLVEQGYNCWLGGNIGTPL 156
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ + V+E+SS+Q+ + P V+VV NL P+HL+ HK+M Y
Sbjct: 157 LDRIDEI-------NETDKVVLELSSFQLHTMKR--SPHVAVVTNLAPNHLDVHKSMDEY 207
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAK-TASFEV 201
K +++ H ++ F N + I + + + KID+ AK + V
Sbjct: 208 VEAKKNIYLHQTGNDKLVINFDNDITRDFINDAKGKVVYFSRIN--KIDSGAKMKGNMLV 265
Query: 202 PAVGVVSQ--LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ G + + ++ + G HN N A +V+ V+++ + + HR+
Sbjct: 266 YSDGKEEKEIINADDIVIPGVHNIENYLAAIAAVIDY---VEIDTIRKVATTFKGVEHRI 322
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319
++V R++ GV + +DS A++ T GL K K +++ GG K + ++ + E
Sbjct: 323 ELV-RELNGVKFYNDSIASSPSRTIAGLNSFK-QKVILIAGGYDKKI------PYDVMGE 374
Query: 320 PL-NHHRCVITFGYSGVLIWKTLVN------NGLSIPCFAVANMKDAVNHARRMATNGDA 372
L N +C++ G + I + L+ G IP +K+AV A + +GD
Sbjct: 375 VLVNKVKCLVLIGQTAPKIEQALLKEIERTGKGKDIPIIHCDTLKEAVEKAYESSKSGDI 434
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQELAFS 401
I++SP ASFD F+NFE RG F+++ S
Sbjct: 435 IIMSPASASFDMFKNFEERGKQFKDIVNS 463
>gi|319639041|ref|ZP_07993799.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria mucosa
C102]
gi|317399945|gb|EFV80608.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria mucosa
C102]
Length = 445
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 122/388 (31%), Positives = 192/388 (49%), Gaps = 40/388 (10%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A V+ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADVVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA L K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEA-----ELQREGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKDKIFRGD----------GVQVLNADDAFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + ++S ++ + G H + A V A L IG+ EAL ++ +
Sbjct: 253 TGRLKQGNEDLIST---QDIPLQGLH--NAANVMAAVALCEAIGLPREALLEHVKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
PHR++ + + GV ++DDSK TN+ AT + L+ + ++LGG K GQ+ F
Sbjct: 308 PHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGK---GQD---FT 359
Query: 316 KLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 374
L + L + V G I + L GL++ A +++AV A A GD ++
Sbjct: 360 PLRDALAGKAKGVFLIGVDAPQIRRDLDGCGLNMT--DCATLEEAVQTAYAQAEAGDIVL 417
Query: 375 LSPGCASFDEFRNFEHRGMVFQELAFSA 402
LSP CASFD F+ + HR VF E AF A
Sbjct: 418 LSPACASFDMFKGYAHRSEVFIE-AFKA 444
>gi|406672326|ref|ZP_11079552.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bergeyella
zoohelcum CCUG 30536]
gi|405588014|gb|EKB61732.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bergeyella
zoohelcum CCUG 30536]
Length = 451
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 109/388 (28%), Positives = 202/388 (52%), Gaps = 28/388 (7%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA L + G R+ SE++FAA+ + KI+A+TG+NGK+T + + +L + G+
Sbjct: 84 KAGILQKIQAKGIRLSSEIEFAAEFT--NAKIIAITGSNGKTTTTSLIYHILKNAGLHVG 141
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDH 132
+GGN+G ++ + + V+EVSS+Q++ I N F P ++++LNL+PDH
Sbjct: 142 LGGNIGTSFAKQV--------ADENYDYFVLEVSSFQLDDIQN--FQPYIALLLNLSPDH 191
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID 191
L+++ ++YAL K + + N + + ++ +E +K + K+D
Sbjct: 192 LDQYNYNYEDYALAKLRITENQKNHQFFIYNHEDEMTHELLKKIEVKAKTLPFSLNEKLD 251
Query: 192 TEAKTASFEVPAVGVVSQ--LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
E A+ + V + + ++++ + ++G+HN N + A S++G + + E L + +
Sbjct: 252 -EGAYATVDKIFVKLEEEFSMKINELPLVGKHNVAN--ILAASMVGKLLHISDENLQNAL 308
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
R HR+++ +I GV +++DSKATN+ A L + V + GG K G
Sbjct: 309 MTFRAVEHRLELF-AEIDGVKYINDSKATNVNAAYYALESMTS-PTVWIAGGVDK---GN 363
Query: 310 ESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN 369
+ E L++ + VI G I + + I ++ + +++ V A+ +A N
Sbjct: 364 DYTEIEDLVKE--KVKAVICLGKDNEKIIEFFQDKMKLI--YSTSTLEECVKIAKSIAQN 419
Query: 370 GDAIVLSPGCASFDEFRNFEHRGMVFQE 397
GD ++LSP CASFD F N+E RG F++
Sbjct: 420 GDTVLLSPCCASFDLFENYEDRGEKFKK 447
>gi|298369637|ref|ZP_06980954.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sp.
oral taxon 014 str. F0314]
gi|298282194|gb|EFI23682.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sp.
oral taxon 014 str. F0314]
Length = 445
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 120/388 (30%), Positives = 191/388 (49%), Gaps = 40/388 (10%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA L K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEA-----ELQREGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNSDDVFCRAMKRAGREVKWFSLEQEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + G + ++ + G H + A V A L +G+ EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLH--NAANVMAAVALCEAVGLPREALIEHVKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
PHR++ + + GV ++DDSK TN+ AT + L+ + ++LGG K GQ+ F
Sbjct: 308 PHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGK---GQD---FT 359
Query: 316 KLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 374
L + L + V G I + L GL++ A +++AV A A GD ++
Sbjct: 360 PLRDALAGKAKGVFLIGVDAPQIRRDLDGCGLNMT--DCATLEEAVQTAYAQAEAGDIVL 417
Query: 375 LSPGCASFDEFRNFEHRGMVFQELAFSA 402
LSP CASFD F+ + HR VF E AF A
Sbjct: 418 LSPACASFDMFKGYAHRSEVFIE-AFKA 444
>gi|374602399|ref|ZP_09675392.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paenibacillus
dendritiformis C454]
gi|374392001|gb|EHQ63330.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paenibacillus
dendritiformis C454]
Length = 475
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 121/398 (30%), Positives = 191/398 (47%), Gaps = 44/398 (11%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + P I+ +TG+NGK+T T+VG ML G+ V GN+G P
Sbjct: 93 LALGIEVVTEVEVAYHLSP--APIIGITGSNGKTTTTTWVGNMLEAAGLRPIVAGNIGTP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
L +AA A V V E+SS+Q++ ++ F P V+ +LNL+ HL+ H TM++
Sbjct: 151 LCQAAGEAAA-------DNVLVAELSSFQLKGTSE-FRPRVASLLNLSETHLDYHGTMED 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP----GVKIDTEAKTA 197
Y +K LF +M N + +L + + W+ + GV ++ A
Sbjct: 203 YVQSKARLFRNMANGDIAVLNADDAACRALAPDIGARIWWVSSTRRVECGVYVEPPYPEA 262
Query: 198 SFEVPA-----VGVVSQLQLH------NMKVMGRHNYHNA-AVAALSVLGLDIGVDVEAL 245
S E V QLH + V GR+N NA A A+S+ G AL
Sbjct: 263 SREGEDEDRQLVYADEAGQLHPIIGVREIGVSGRYNVDNALAAVAISIAA---GAKPGAL 319
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKV 305
+ R HR++ V ++ G ++ ++SKATN +AT L + V++ GG +
Sbjct: 320 AEPLRSFRGVEHRLEYVG-EVNGTSYYNNSKATNTKATLMALEAFEA-PVVLIAGGLDRG 377
Query: 306 LNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFA--VANMKDAVNH 362
L+ F +L+ L V+T G + ++ GL+ V N DAV+
Sbjct: 378 LD------FLELVPVLKERAAAVVTMGETREILAAIAAKAGLTKVAVVDNVDNASDAVSE 431
Query: 363 ARRMATN----GDAIVLSPGCASFDEFRNFEHRGMVFQ 396
A R+A GD ++LSP CAS+D F ++E RG +F+
Sbjct: 432 AVRLAAGYAKPGDVVLLSPACASWDMFPSYEERGRMFK 469
>gi|445062049|ref|ZP_21374491.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
hampsonii 30599]
gi|444506568|gb|ELV06888.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
hampsonii 30599]
Length = 471
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 107/382 (28%), Positives = 190/382 (49%), Gaps = 37/382 (9%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
+++ E++FA +P +AVTGT+GK+T VT V ++++ +A + GN+GN S+
Sbjct: 111 KIIGEIEFAYNFLPNR-NYIAVTGTDGKTTTVTLVHKIISSYK-KARLLGNVGNTFSK-- 166
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ S + ++E+SS+Q+E K F ++ VLN+ DHL+R+K +++Y TK
Sbjct: 167 -EIETIESDED----IILELSSFQLETVEK-FHAHIAAVLNIAEDHLDRYKDIEDYFNTK 220
Query: 147 CHLFSHMVNTKLGLLPFGN-------QHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
++ + +L + N LN K + F + + E +
Sbjct: 221 KNIAINQNKNDFLILNYDNIYTNIWYNELNYNCKMKLLTFSLKSKFATIYYNEEDDCIYY 280
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
E + + N KV+G+HN N A L L DI D + + R HR+
Sbjct: 281 ENQKL-----FSIANRKVIGKHNIANILAAVLICLKDDIPAD--HIEKAVNNFRGIEHRL 333
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319
++V +I GV +++DSKAT++ + + L ++++GG+ K ++ N +IE
Sbjct: 334 ELV-AEINGVKYINDSKATSMNSVMSALKSF-DKDIILIMGGRNKNIDFTSLNN---IIE 388
Query: 320 PLNHHRCVITFGYSGVLIWKTL-VNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
+ +I G + + + + N + I F DA N+A ++ NGD ++LSPG
Sbjct: 389 S--RVKKLILIGEAADTLNEMIHFENKIIIKDFT-----DAFNYASAISINGDTVLLSPG 441
Query: 379 CASFDEFRNFEHRGMVFQELAF 400
C+SFD F+N+E RG F+ L +
Sbjct: 442 CSSFDMFKNYEERGKYFKSLVY 463
>gi|229846167|ref|ZP_04466279.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae 7P49H1]
gi|229811171|gb|EEP46888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae 7P49H1]
Length = 437
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 197/410 (48%), Gaps = 53/410 (12%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA L++G V+ +++ + + I + +TG+NGKSTV
Sbjct: 62 WLLESDMIVISPGLAVKTPEIQTALKAGVEVIGDIELFCRTATKPI--VGITGSNGKSTV 119
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G++ +GGN+G P AL ++ V+E+SS+Q+E
Sbjct: 120 TTLVYEMAKAAGVKVGMGGNIGIP---------ALSLLNEDCELYVLELSSFQLETTYS- 169
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL------PFGNQHLNEA 171
+ VLN+T DH++R+ +++Y K ++ N K+G+L FG N+A
Sbjct: 170 LKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIYH---NAKVGVLNNEDSLTFGEGE-NQA 225
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
+ F A GA +K + + + + L ++GRHNY N + A
Sbjct: 226 EQIVSF--AENGADYWLKTENGKQYLMAKDEVI-----LPCEEATLVGRHNYMN--ILAA 276
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L +G++++A+ + + + HR Q+ H+ GV W++DSKATN+ +T L L
Sbjct: 277 TALAQAVGINLDAIRTALRQFKGLDHRFQLAHQ-ANGVRWINDSKATNVGSTVAALAGLY 335
Query: 292 GH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCV-ITFGYSGVLIWKTLVNNGLSIP 349
K +LLGG K + F +L + +N + + FG G + K LS
Sbjct: 336 VEGKLHLLLGGDGKGAD------FSELADLINQPQIICYCFGRDGAQLAK------LSSQ 383
Query: 350 CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
+ M+ A+ R +GD ++LSP CAS D+F +FE RG F LA
Sbjct: 384 SYLFETMEQAIEFLRPTLQSGDMVLLSPACASLDQFASFEKRGEEFTRLA 433
>gi|384209182|ref|YP_005594902.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
intermedia PWS/A]
gi|343386832|gb|AEM22322.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
intermedia PWS/A]
Length = 471
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 102/387 (26%), Positives = 193/387 (49%), Gaps = 47/387 (12%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
+++ E++FA IP +AVTGT+GK+T VT + +++ +A + GN+GN S+
Sbjct: 111 KIIGEIEFAYNFIPNR-NYIAVTGTDGKTTTVTLIHEIIKSYK-KARLLGNVGNTFSKE- 167
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ + +P + ++E+SS+Q+E K F ++ +LN+ DHL+R++ +++Y TK
Sbjct: 168 -----IETIEPDEDI-ILELSSFQLETVEK-FHAHIAAILNIAEDHLDRYRDIEDYFNTK 220
Query: 147 CHLFSHMVNTKLGLLPFGN-------QHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
++ + +L + N LN K + F + + E + +
Sbjct: 221 KNIIINQNKNDFLVLNYDNIYTNIWYNELNGNSKSKLLTFSLKSKFATIYYNEEDEYIYY 280
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
E + + N K++G+HN N A L + L G+ + + + + HR+
Sbjct: 281 ENEKL-----FSIANRKLIGKHNIANILAAVL--ICLKDGIPADNIEKVVNNFKGIEHRV 333
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319
++V +I GV +++DSKAT++ + + L ++++GG+ K ++
Sbjct: 334 ELVS-EINGVKYINDSKATSMNSVMSALKSF-DKDIILIMGGRNKNID----------FT 381
Query: 320 PLN-----HHRCVITFGYSGVLIWKTL-VNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
PLN + +I G + ++ L +N + V ++ DA N+A +A NGD +
Sbjct: 382 PLNSIVNARVKKLILMGEAANVLSDMLHFDNKI-----IVRDLTDAFNYASSIAINGDTV 436
Query: 374 VLSPGCASFDEFRNFEHRGMVFQELAF 400
+LSPGC SFD F+N+E RG F+ L +
Sbjct: 437 LLSPGCTSFDMFKNYEERGKYFKSLVY 463
>gi|289578675|ref|YP_003477302.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
italicus Ab9]
gi|289528388|gb|ADD02740.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
italicus Ab9]
Length = 454
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 121/386 (31%), Positives = 197/386 (51%), Gaps = 39/386 (10%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q V E++FA + I A+TGTNGK+T + +G+M + G + +V GN+G PL
Sbjct: 90 QKKIEVFGEVEFAYRF--SKAPIYAITGTNGKTTTTSLLGEMFKNTGRKVYVAGNIGYPL 147
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
A + +++ F VA E+SS+Q+E K F P +S ++N+TPDHL+RHKT +NY
Sbjct: 148 IYAV-----MEAAEDDFIVA--EISSFQLETI-KEFKPKISCIINITPDHLDRHKTFENY 199
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID-----TEAKTA 197
K +F + + +L + ++ + + N A FP + K
Sbjct: 200 RDIKGRIFENQREDEYTVLNY-----DDPVTWNLKNKAKCRVFPFSRKSLLENGAYVKDG 254
Query: 198 SFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
S + G ++ + + + G HN NA +AA SV L G+ + + +T++ +
Sbjct: 255 SIYISVYGNAEKIIDIEEIYIPGEHNLENA-LAASSVAYLS-GISADVIANTLKTFKGVE 312
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK 316
HR++ V +I GV + +DSK TN +A+ + LK V++ GG K G E F++
Sbjct: 313 HRIEFVD-EINGVKFYNDSKGTNPDASIKAIQALK-TPIVLIAGGYDK---GSE---FDE 364
Query: 317 LIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIP----CFAVANMKDAVNHARRMATNGD 371
++ N + +I G + I T S P FA +++AV A A GD
Sbjct: 365 FVKAFNGKVKKLILIGQTAKKIKDTA--RKYSYPEDDILFA-GTLEEAVKKAYESAKEGD 421
Query: 372 AIVLSPGCASFDEFRNFEHRGMVFQE 397
+++LSP CAS+D FRNFE RG +F++
Sbjct: 422 SVLLSPACASWDMFRNFEERGRIFKK 447
>gi|363897965|ref|ZP_09324502.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oribacterium sp.
ACB7]
gi|361957610|gb|EHL10917.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oribacterium sp.
ACB7]
Length = 454
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 112/376 (29%), Positives = 189/376 (50%), Gaps = 29/376 (7%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+ E++ A Q K+ AVTGTNGK+T V+ +G++L + V GN+GNP + A
Sbjct: 97 VIGEIELAYQSCKG--KLCAVTGTNGKTTTVSLIGEILKSQYPDTHVVGNIGNPFTAEAL 154
Query: 88 HCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ V V EVSS+Q+E I + F P VS + N+TPDHL+RHKTMKNY K
Sbjct: 155 DT-------EEQSVTVCEVSSFQLESIVD--FRPNVSAITNITPDHLDRHKTMKNYIAIK 205
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNE--AIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+ + +L + + L + +G + N+ W + K + F
Sbjct: 206 ESIAVNQTEEDSIVLNYMDSELRKFGKKRGLKPNVLWFSSEEEPKEGFFLRGEEFIYKNK 265
Query: 205 GVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
+L + +++++G+HNY N + A+ V L +GV ++ + + + HR++ V
Sbjct: 266 EKEEKLFKTGDLQLLGKHNYEN-VMCAMGV-ALKMGVPMDKIVKVCKKFKPVEHRIEFV- 322
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN-GFEKLIEPLN 322
R+ GV + +DSK TN++A L + G V+L+GG G + + F+ ++
Sbjct: 323 RERSGVRYYNDSKGTNVDAAIQALRAMPGP--VLLIGG------GYDKHVDFDAWVKEFK 374
Query: 323 HH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G + I +G FA +M +AV A GD ++LSP CAS
Sbjct: 375 GRVKYLVLIGETRNQIAACAKKHGFHNLMFA-EDMDEAVKDCAAYADPGDYVLLSPACAS 433
Query: 382 FDEFRNFEHRGMVFQE 397
+ F+++E RG +F++
Sbjct: 434 WGMFKDYEERGRIFKD 449
>gi|256425925|ref|YP_003126578.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chitinophaga
pinensis DSM 2588]
gi|256040833|gb|ACU64377.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chitinophaga
pinensis DSM 2588]
Length = 446
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 189/378 (50%), Gaps = 34/378 (8%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++FA + S K++A+TG+NGKST + G+ A + GN+G LS A
Sbjct: 90 VISEIEFAYRYSKDS-KVIAITGSNGKSTTTALTFNIFETAGLHAAMVGNIG--LSYAR- 145
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTK 146
P+ +VEVSS+Q++ + F P V+++LN+TPDHL+R+ M NY +K
Sbjct: 146 QIATAPAD-----YYIVEVSSFQLD-DIRDFKPNVAILLNITPDHLDRYDYKMANYVASK 199
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHR-------FNLAWIGAFPGVKIDTEAKTASF 199
+ + + + + +K H F + G + +
Sbjct: 200 FRIAMNQGPEDYFVYCIDDPEITNYLKEHTIYSTTIPFTIMEPLKQGGFMANEQVNIQVN 259
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ P + + ++++ + G+HN +N+ A ++ +DI E + ++ ++ HRM
Sbjct: 260 DEPMI-----VSMYDLALKGKHNLYNSMAAGIAGRTMDIR--KEKIRESLTSFKSLEHRM 312
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319
+ V ++GV +++DSKATN+ + L ++ H V+++GG V G + + L++
Sbjct: 313 EYVAT-VRGVDFINDSKATNVNSLWFALESME-HPVVLVMGG---VDKGNDYSAIRDLVK 367
Query: 320 PLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 379
+ +I G I L +G + +MKDAVN A + A GD ++LSP C
Sbjct: 368 --EKVKAIICLGVDNAPIQDAL--SGYTPVMIDTRSMKDAVNAAFQYAAKGDVVLLSPAC 423
Query: 380 ASFDEFRNFEHRGMVFQE 397
ASFD F+N+E RG F+E
Sbjct: 424 ASFDLFKNYEDRGRQFKE 441
>gi|334144431|ref|YP_004537587.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Thioalkalimicrobium cyclicum ALM1]
gi|333965342|gb|AEG32108.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Thioalkalimicrobium cyclicum ALM1]
Length = 448
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 189/406 (46%), Gaps = 65/406 (16%)
Query: 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
L+ T L Q G ++ +++ A+ S I+ +TG+NGKSTV + Q+L+ G +A
Sbjct: 72 LRQTWLQVFKQKGIEIIGDIELFARAA--SAPIIGITGSNGKSTVTSLTAQLLSAAGYKA 129
Query: 73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVS-VVLNLTPD 131
+GGN+G P + L + V V+E+SS+Q++ Y TV+ VLN+ D
Sbjct: 130 GLGGNIGKP-------ALDLLKENQDYDVFVLELSSFQLD--TTYSLHTVAATVLNICED 180
Query: 132 HLERHKTMKNYALTKCHLFSHMVNTKLGLLP-----------------FGNQHLNEAIKG 174
HL+R+ M Y +K ++ +T+L ++P FG QH
Sbjct: 181 HLDRYDGMDAYIQSKNTIYQ---DTELAVMPLEEPTHFWVPGITPRYYFGLQH------- 230
Query: 175 HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234
R + W G+ ID + F A G + + +K+ H NA A V
Sbjct: 231 PRNSSDW-----GLVIDKQG----FRYLARGEQLIMPVQELKLQAPHQLLNALAALALVD 281
Query: 235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH- 293
+ + E + + PHR + V ++ GVTW++DSK TN+ AT T + L +
Sbjct: 282 --EFAIPPEIIRHVLAEFTGLPHRTEWV-AEMNGVTWINDSKGTNVGATLTAINSLGSNV 338
Query: 294 ---KCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIP 349
K V+L GG AK + L PL R I +G +++ + +P
Sbjct: 339 APGKLVLLAGGDAKGAD------MAPLAAPLAQFARAAILYGRDADKLYQAWSAD---LP 389
Query: 350 CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
C + + +AV A +A GDA++LSP CAS D+F N++HRG F
Sbjct: 390 CHRLETLDEAVVLAASLAKAGDAVLLSPACASLDQFTNYQHRGQHF 435
>gi|296125387|ref|YP_003632639.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
murdochii DSM 12563]
gi|296017203|gb|ADG70440.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brachyspira
murdochii DSM 12563]
Length = 471
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 106/386 (27%), Positives = 192/386 (49%), Gaps = 37/386 (9%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G +++ E++FA ++P +AVTGT+GK+T VT + ++++ +A + GN+GN
Sbjct: 107 RRGIKIIGEIEFAYNLLPNR-NYIAVTGTDGKTTTVTLIYKIISSYK-KARLVGNVGNTF 164
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
S+ L + +P + V+E+SS+Q+E K F ++ +LN+ DHL+R+K ++ Y
Sbjct: 165 SKE------LETIEPDEDI-VLELSSFQLETVEK-FHAHIAAILNIAEDHLDRYKDIEEY 216
Query: 143 ALTKCHLFSHMVNTKLGLLPFGN-------QHLNEAIKGHRFNLAWIGAFPGVKIDTEAK 195
K ++ + +L + N LN K + F + + E +
Sbjct: 217 FNAKKNISINQNKNDFLILNYDNIYTNIWYNELNNNCKMKLLTFSLKSKFADIYYNEEDE 276
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
+E + + K++G+HN N A L L +I E + + +
Sbjct: 277 YIYYENEKL-----FSIKERKILGKHNVANILAAVLVCLKDNIPA--EHIEHVVNNFKGI 329
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
HR+++V +I GV +++DSKAT++ A + L ++++GG+ K ++ N
Sbjct: 330 EHRVELV-AEINGVKYINDSKATSMNAVMSALKSF-DKDIILIMGGRNKNIDFTSLNN-- 385
Query: 316 KLIEPLNHHRCVITFGYSGVLIWKTL-VNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 374
LIE + +I G + + + N + I F DA N+A ++ NGD ++
Sbjct: 386 -LIES--RVKKLILIGEAAEALDDMIHFENKIIIKDFT-----DAFNYASAISINGDTVL 437
Query: 375 LSPGCASFDEFRNFEHRGMVFQELAF 400
LSPGCASFD F+N+E RG F+ L +
Sbjct: 438 LSPGCASFDMFKNYEERGKYFKSLVY 463
>gi|349610789|ref|ZP_08890115.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria sp.
GT4A_CT1]
gi|348615608|gb|EGY65120.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria sp.
GT4A_CT1]
Length = 445
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 120/388 (30%), Positives = 190/388 (48%), Gaps = 40/388 (10%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA L K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEA-----ELQREGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + G + ++ + G H + A V A L +G+ EAL ++ +
Sbjct: 253 TGRLK---QGDEDLIATQDIPLQGLH--NAANVMAAVALCEAVGLPREALLEHVKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
PHR++ + GV ++DDSK TN+ AT + L+ + ++LGG K GQ+ F
Sbjct: 308 PHRVEKIGEK-NGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGK---GQD---FT 359
Query: 316 KLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 374
L + L + V G I + L GL++ A +++AV A A GD ++
Sbjct: 360 PLRDALAGKAKGVFLIGVDAPQIRRDLDGCGLNMT--DCATLEEAVQTAYAQAEAGDIVL 417
Query: 375 LSPGCASFDEFRNFEHRGMVFQELAFSA 402
LSP CASFD F+ + HR VF E AF A
Sbjct: 418 LSPACASFDMFKGYAHRSEVFIE-AFKA 444
>gi|385850666|ref|YP_005897181.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis M04-240196]
gi|325205489|gb|ADZ00942.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis M04-240196]
Length = 445
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/388 (30%), Positives = 189/388 (48%), Gaps = 40/388 (10%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRDDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + G + ++ + G H + A V A L IG+ EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLH--NAANVMAAVALCEAIGLSREALLEHVKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
PHR++ + GV ++DDSK TN+ AT + L+ + ++LGG K GQ+ F
Sbjct: 308 PHRVEKIGEK-NGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGK---GQD---FT 359
Query: 316 KLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 374
L + L + V G I + L GL++ A + +AV A A GD ++
Sbjct: 360 PLRDALVGKAKGVFLIGVDAPQIRRDLDGCGLNMT--DCATLGEAVQTAYAQAEAGDIVL 417
Query: 375 LSPGCASFDEFRNFEHRGMVFQELAFSA 402
LSP CASFD F+ + HR VF E AF A
Sbjct: 418 LSPACASFDMFKGYAHRSEVFIE-AFKA 444
>gi|426411403|ref|YP_007031502.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
sp. UW4]
gi|426269620|gb|AFY21697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
sp. UW4]
Length = 448
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 116/362 (32%), Positives = 181/362 (50%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL + ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLRDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L+ AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLMGEGQPCWTFGLSKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S++ HR Q V RD+ GV + +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSSLRTFAGLEHRCQWV-RDLDGVGYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D+ G K V++ GG K G E F+ L +P+ + R V+ G
Sbjct: 329 NVGAALAAIEGLGADIDG-KVVLIAGGDGK---GAE---FKDLRDPVAANCRAVVLMGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
I + + G ++P A++ +AV R A GD ++LSP CASFD F+N+E RG
Sbjct: 382 SDKIGEAI---GDAVPLIRAASLVEAVERCRAAAQPGDVVLLSPACASFDMFKNYEDRGH 438
Query: 394 VF 395
F
Sbjct: 439 QF 440
>gi|340363640|ref|ZP_08685963.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
macacae ATCC 33926]
gi|339885319|gb|EGQ75048.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
macacae ATCC 33926]
Length = 445
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/388 (30%), Positives = 191/388 (49%), Gaps = 40/388 (10%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA L K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEA-----ELQREGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + G + ++ + G H + A V A L +G+ EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLH--NAANVMAAVALCEAVGLPREALLEHVKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
PHR++ + + GV ++DDSK TN+ AT + L+ + ++LGG K GQ+ F
Sbjct: 308 PHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGK---GQD---FT 359
Query: 316 KLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 374
L + L + V G I + L GL++ A +++AV A A GD ++
Sbjct: 360 PLRDALAGKAKGVFLIGVDAPQIRRDLDGCGLNMT--DCATLEEAVQTAYAQAEAGDIVL 417
Query: 375 LSPGCASFDEFRNFEHRGMVFQELAFSA 402
LSP CASFD F+ + HR VF E AF A
Sbjct: 418 LSPACASFDMFKGYAHRSEVFIE-AFKA 444
>gi|398951321|ref|ZP_10673969.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM33]
gi|398156708|gb|EJM45122.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM33]
Length = 448
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 117/362 (32%), Positives = 181/362 (50%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLHDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L+ AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLMGEGQPCWTFGLSKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S++ HR Q V RD+ GV + +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSSLRTFAGLEHRCQWV-RDLDGVGYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D+ G K V++ GG K G E F+ L +P+ + R V+ G
Sbjct: 329 NVGAALAAIEGLGADIDG-KVVLIAGGDGK---GAE---FKDLRDPVAANCRAVVLMGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
I + + G ++P VA++ +AV R A GD ++LSP CASFD F+N+E RG
Sbjct: 382 SDKIGEAI---GDAVPLIRVASLVEAVEQCRAAAQPGDVVLLSPACASFDMFKNYEDRGH 438
Query: 394 VF 395
F
Sbjct: 439 QF 440
>gi|260589604|ref|ZP_05855517.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Blautia
hansenii DSM 20583]
gi|260540172|gb|EEX20741.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Blautia
hansenii DSM 20583]
Length = 457
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 118/402 (29%), Positives = 200/402 (49%), Gaps = 51/402 (12%)
Query: 12 QLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE 71
Q+KA G+ V E++ A Q+ ++ LA+TGTNGK+T +G+++
Sbjct: 91 QIKAAGIP--------VWGEIELAYQMSAGTV--LAITGTNGKTTTTALLGEIMKAYADS 140
Query: 72 AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPD 131
FV GN+GNP ++AA L ++ + VA E+SS+Q+E + F P VS +LN+T D
Sbjct: 141 VFVVGNIGNPYTDAA-----LSMTEDSYTVA--EISSFQLETIDT-FAPKVSAILNITED 192
Query: 132 HLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--------- 182
HL RH TM+ Y K + ++ +L + ++ L G R +
Sbjct: 193 HLNRHHTMEEYIRVKELITANQTKEDYCILNYEDEVLRAF--GERCPAKTVFFSSERKLE 250
Query: 183 -GAF-PGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240
GAF G I + T + E+ G +K++G+HNY N V A S + GV
Sbjct: 251 KGAFLDGDAICLKTDTETLEIVKTG--------ELKILGKHNYEN--VMAASAMAYYTGV 300
Query: 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG 300
VE ++ I R HR++ V +I G+ + +DSK TN +A G+ + ++ +L+G
Sbjct: 301 PVEVIHKAITEFRAVAHRIEFVD-EINGIAYYNDSKGTNPDAAIKGIQAM--NRPTLLIG 357
Query: 301 GQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDA 359
G + + +E+ I+ + + ++ G + I + G + N+++A
Sbjct: 358 G-----GYDKESSYEEWIQSFDGKVKYLVLIGQTREKIQEVAHKCGF-VNTILADNLEEA 411
Query: 360 VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 401
V+ + A GDA++LSP CAS+ +F N+E RG F+E ++
Sbjct: 412 VSMCTQKAEKGDAVLLSPACASWGQFDNYEQRGDKFKEYVYA 453
>gi|300774251|ref|ZP_07084118.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Sphingobacterium spiritivorum ATCC 33861]
gi|300758930|gb|EFK55759.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Sphingobacterium spiritivorum ATCC 33861]
Length = 457
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 117/391 (29%), Positives = 190/391 (48%), Gaps = 39/391 (9%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ L Q G V+ E++FAAQ + ++ +TG+NGKST +L G+ + GN
Sbjct: 90 VVALKQKGIPVIGEIEFAAQYT--NARLYCITGSNGKSTTTMLTYYILQKAGVNVGLAGN 147
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERH 136
+G AL ++ KF V V+E+SS+ ++ + Y F V+V+LN+TPDHL+R+
Sbjct: 148 IG--------RSFALQVAQEKFDVYVLEISSFMLD--DMYQFRADVAVILNITPDHLDRY 197
Query: 137 K-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLA-WIGAF-----PGVK 189
M+NY +K + + + ++ + ++ H A W PG
Sbjct: 198 DHKMENYVDSKFRMIRNQTANDYFIYCLDDEETVKGLERHHTEAAIWPMTQEQVINPGAY 257
Query: 190 IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL--SVLGLDIGVDVEALNS 247
+D E K P G + ++ + G+HN +N A L V L E+++S
Sbjct: 258 LDQE-KNIIINTPK-GEQFIMNTEDLSLQGKHNVYNNMAAGLVAKVQELRNRSMQESMSS 315
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLN 307
+ I PHR++ V I GV +++DSKATN+ + L + V+++GG K
Sbjct: 316 YVNI----PHRLEHVAC-IGGVNYINDSKATNVNSVWYALESF-SPQIVLIMGGVDK--- 366
Query: 308 GQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRM 366
N +E L + + R +I G I ++ + I ++MKDAV A +
Sbjct: 367 ---GNDYEMLRDLVRSKVRAIICIGKDNTRIHESFEEDTDVI--VNSSSMKDAVEIASHI 421
Query: 367 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
A GD ++LSP CASFD F+N+E RG F+E
Sbjct: 422 AQKGDTVLLSPACASFDWFKNYEERGDKFKE 452
>gi|409196667|ref|ZP_11225330.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinilabilia
salmonicolor JCM 21150]
Length = 447
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 112/393 (28%), Positives = 197/393 (50%), Gaps = 47/393 (11%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ L Q G V+SE++FA + + K++ VTG+NGK+T ++ ++ G+ + GN
Sbjct: 80 IKALHQQGIPVISEIEFAGRY--SNAKMVGVTGSNGKTTTAMWIFHLMKKSGLNVVLAGN 137
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+GN ++ L P + V+E+SS+Q++ + C T +++ N+TPDHL+R+
Sbjct: 138 VGNSMARE------LLEKDP--DIFVLELSSFQLDGMKDFKCHT-AIITNITPDHLDRYD 188
Query: 138 -TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIK-----GHRFNLAWIGAF------ 185
+NY K + ++ N ++ + ++ + +K GHR A+ +
Sbjct: 189 YKFENYVDAKFRILNNHTNDEIFIFNAHDKEIMVRLKMMKYPGHRCPFAFDDVYGEGACV 248
Query: 186 PGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
G K+ F +P V ++ + G+HN NA A+L+ L + G EA+
Sbjct: 249 DGEKVVFNTPRHHFSIPVV---------DIALPGKHNLSNAMAASLAALRM--GASEEAV 297
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKV 305
+ + HR++ V ++ GV +++DSKATN++++ L ++ + + GG K
Sbjct: 298 KEGLTDFPSVAHRLESV-AELNGVLYINDSKATNIDSSWYALESME-RPVIWIAGGTDK- 354
Query: 306 LNGQESNGFEKL-IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVAN-MKDAVNHA 363
G + + E+L I+ + H C+ GV K L G +P AN M AV A
Sbjct: 355 --GNDYSELEELAIQKVKHLICL------GVDNRKLLAVFGNKLPVVTEANSMSQAVEQA 406
Query: 364 RRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
A +GD ++LSP CASFD F N+ HRG +F+
Sbjct: 407 VDAARSGDVVLLSPACASFDLFDNYVHRGDMFK 439
>gi|416181866|ref|ZP_11611807.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis M13399]
gi|416212080|ref|ZP_11621685.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis M01-240013]
gi|325134887|gb|EGC57520.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis M13399]
gi|325144959|gb|EGC67242.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis M01-240013]
Length = 445
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/388 (30%), Positives = 190/388 (48%), Gaps = 40/388 (10%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + G + ++ + G H + A V A L IG+ EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLH--NAANVMAAVALCEAIGLSREALLEHVKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
PHR++ + + GV ++DDSK TN+ AT + L+ + ++LGG K GQ+ F
Sbjct: 308 PHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGK---GQD---FT 359
Query: 316 KLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 374
L + L + V G I + L GL++ A + +AV A A GD ++
Sbjct: 360 PLRDALVGKAKGVFLIGVDAPQIRRDLDGCGLNMT--DCATLGEAVQTAYAQAEAGDIVL 417
Query: 375 LSPGCASFDEFRNFEHRGMVFQELAFSA 402
LSP CASFD F+ + HR VF E AF A
Sbjct: 418 LSPACASFDMFKGYAHRSEVFIE-AFKA 444
>gi|398841925|ref|ZP_10599130.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM102]
gi|398107034|gb|EJL97044.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM102]
Length = 448
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 118/362 (32%), Positives = 181/362 (50%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDIELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNL--AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L AF G++ + K +FE + + + +KV
Sbjct: 221 ---SRPLMGEGQPCWTFGLNKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVRELKVR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S + HR Q V R++ GV++ +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSALRNFAGLEHRCQWV-RELNGVSYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D+ G K V++ GG K G E F+ L +P+ + R VI G
Sbjct: 329 NVGAALAAIEGLGADIDG-KLVLIAGGDGK---GAE---FKDLRDPVAANCRAVILMGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
I + + G ++P V ++ +AV R +A GDA++LSP CASFD F+N+E RG
Sbjct: 382 SDKIGEAI---GDAVPLIRVGSLIEAVEQCRTIAEKGDAVLLSPACASFDMFKNYEDRGH 438
Query: 394 VF 395
F
Sbjct: 439 QF 440
>gi|116626353|ref|YP_828509.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
Solibacter usitatus Ellin6076]
gi|122251657|sp|Q01Q46.1|MURD_SOLUE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|116229515|gb|ABJ88224.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
Solibacter usitatus Ellin6076]
Length = 442
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 111/374 (29%), Positives = 181/374 (48%), Gaps = 25/374 (6%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G RV+ E++ AA + + + +TG+NGK+T + G +L G+ VGGN+G P++
Sbjct: 86 GVRVIGEVELAAPFL--KGRTIGITGSNGKTTTTSLTGHILREAGVPVQVGGNIGLPVT- 142
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
A+ S V+E+SS+Q+E ++ F + + LN+T +HL+RH T +NYA
Sbjct: 143 ------AMVESSRDDGWNVLELSSFQLETIHE-FRAHIGLALNVTQNHLDRHHTFENYAA 195
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K LF +L + R + W + K+D A ++
Sbjct: 196 IKGRLFETQQAGDYAVLNAEDPVCVAYAARTRATVQWFSSRK--KVDPGATLCGNKLVLF 253
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
G + ++ + + GRHN N V A ++ GV+ A+ + + R HR++ V R
Sbjct: 254 GKL-LMEAGEIPIRGRHNIEN--VLAAAIAASRAGVEHAAIAAAVRSFRAVEHRLEFV-R 309
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH 324
+ GV + +DSKAT+++AT L G VIL GG+ K L+ + L EPL
Sbjct: 310 KLNGVDFYNDSKATSVDATLKALDAFPGGLWVIL-GGKDKGLD------YAALREPLTEK 362
Query: 325 RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 384
G K ++P + AV HA A GD ++L+P CASFD+
Sbjct: 363 ARAAL--LIGAAAGKIAEQIAGAVPLVDAKTLDGAVRHAFAHAAPGDTVLLAPACASFDQ 420
Query: 385 FRNFEHRGMVFQEL 398
F+++EHRG F+++
Sbjct: 421 FKSYEHRGETFKQI 434
>gi|402846605|ref|ZP_10894916.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Porphyromonas
sp. oral taxon 279 str. F0450]
gi|402267821|gb|EJU17212.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Porphyromonas
sp. oral taxon 279 str. F0450]
Length = 481
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 114/403 (28%), Positives = 202/403 (50%), Gaps = 52/403 (12%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + + + G V+SE++ A + + K++ +TG+NGK+T ++ +L G++
Sbjct: 101 KAPIMVAIRERGIPVISEIELAGRYL--KGKVIGITGSNGKTTTTMWLHHILTEAGMKPA 158
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHL 133
+ GN+G L+ +P +P + VVE+SS+Q++ K F +++++N+TPDHL
Sbjct: 159 LAGNVGFSLARQV-----IPDEQPDY--FVVELSSFQLDDMYK-FRVHIALLMNITPDHL 210
Query: 134 ER-HKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR---------FNLAWIG 183
+R H + YA+ K + + + ++ ++ + H+ +G
Sbjct: 211 DRYHYNFEEYAMAKMRILQNQTAEDAFIYWGEDEFVSRYVMSHQPMPMQTLSFLTYPQVG 270
Query: 184 AFPGVKIDTEAKT----ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG 239
+ D + SFE P + QL L G HN NA A+++ L L +
Sbjct: 271 SAADKSDDNMMRLHFDGKSFEFP----IDQLALQ-----GPHNLQNAMAASIAALRLGVS 321
Query: 240 VDV--EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI 297
DV AL+ + + PHR++ V + GV +++DSKATN+ +T L + V+
Sbjct: 322 HDVLRRALSDFVNV----PHRLEKVGV-LDGVRYINDSKATNVSSTYYALRTMTT-PYVL 375
Query: 298 LLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVL-IWKTLVNNGLSIPCFAVA-N 355
+LGG+ K N + + E + + F + VL ++K+ +P A A +
Sbjct: 376 ILGGEDK------GNDYMDITELITSGARGLVFLTTDVLKLYKSFHGK---VPQIASALS 426
Query: 356 MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
M++A+ HAR MA GD ++LSP CASFD F ++ HRG F+E+
Sbjct: 427 MEEAIAHAREMAQPGDTVLLSPACASFDLFTSYIHRGDRFREV 469
>gi|260424625|ref|ZP_05732710.2| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
invisus DSM 15470]
gi|260402591|gb|EEW96138.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
invisus DSM 15470]
Length = 456
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 121/387 (31%), Positives = 196/387 (50%), Gaps = 33/387 (8%)
Query: 21 LLQSGKR---VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
++++ KR V+SE++ A +V I LAVTGTNGK+T T +G M+ H I V GN
Sbjct: 89 VMEAFKRRIPVISEIELAYRVTKAPI--LAVTGTNGKTTTTTLLGSMIGHSSIPFAVAGN 146
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
LG LS A +A V EVSS+Q+E K FCP +V+LN+TPDH+ERH
Sbjct: 147 LGISLSREA-ELVAEDG------VIAAEVSSFQLEFI-KDFCPKAAVILNITPDHIERHH 198
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT- 196
TM+ Y K +F +M LL +++ +K + + + + D E
Sbjct: 199 TMERYVAAKARIFENMGKDNCLLLNAEDEYTPILMKKAKNTTVCLFS---ISRDVEEGAC 255
Query: 197 ---ASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
A + G V ++ + +++ G NY N AA L + G+ +EA++ I
Sbjct: 256 LNGADLVIKRRGKVLKVAGIDELQLTGNQNYQNVLAAAF--LAYEGGIPLEAIHDGIIEF 313
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
+ PHR++ V R++ GV++ +DSKATN +A G M+ +++ GG K
Sbjct: 314 KGLPHRIEFV-RELDGVSYYNDSKATNTDAAIKG-METFNRPIILIAGGYDK------HT 365
Query: 313 GFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD 371
+K ++ + +C+I G + G+ A +M+ AV + +A +GD
Sbjct: 366 KLDKFMKTVKARVKCLILLGNAAARFKDEAEKAGIKTIVLA-DDMRGAVEKGKSIACSGD 424
Query: 372 AIVLSPGCASFDEFRNFEHRGMVFQEL 398
++LSP C+SFD + N+E RG F+++
Sbjct: 425 VVLLSPACSSFDMYANYEARGFDFKKI 451
>gi|419798035|ref|ZP_14323478.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sicca
VK64]
gi|385696376|gb|EIG26865.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sicca
VK64]
Length = 445
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/388 (30%), Positives = 191/388 (49%), Gaps = 40/388 (10%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA L K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEA-----ELQREGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + G + ++ + G H + A V A L +G+ EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLH--NAANVMAAVALCEAVGLPREALLEHVKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
PHR++ + + GV ++DDSK TN+ AT + L+ + ++LGG K GQ+ F
Sbjct: 308 PHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGK---GQD---FT 359
Query: 316 KLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 374
L + L + V G I + L GL++ A +++AV A A GD ++
Sbjct: 360 PLRDALAGKAKGVFLIGVDAPQIRRDLDGCGLNMT--DCATLEEAVQTAYAQAEAGDIVL 417
Query: 375 LSPGCASFDEFRNFEHRGMVFQELAFSA 402
LSP CASFD F+ + HR VF E AF A
Sbjct: 418 LSPACASFDMFKGYAHRSEVFIE-AFKA 444
>gi|385810783|ref|YP_005847179.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ignavibacterium
album JCM 16511]
gi|383802831|gb|AFH49911.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Ignavibacterium
album JCM 16511]
Length = 448
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 110/386 (28%), Positives = 200/386 (51%), Gaps = 39/386 (10%)
Query: 23 QSGK-RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
QS K +V+SEL+FA+ +I + +TGTNGK+T + G + N G++ +V GN+G
Sbjct: 88 QSKKIKVISELEFASWFCKGTI--VGITGTNGKTTTTSLCGYLFNECGVKTYVAGNIGLA 145
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMK 140
SE A + + +E+SS+Q+++ +K F P V+++LN+TPDHL R++ +++
Sbjct: 146 FSEIADQV-------KENEFVSLEISSFQLDLIDK-FNPKVAMILNITPDHLNRYENSVE 197
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA----FPGVKIDTE--- 193
YAL+K ++ + + +L ++ LN+ I H+ W + G +DT
Sbjct: 198 KYALSKQRIYKNQTENEFLILNRDSELLNQYILQHKSKTFWYSTKEKVYDGCWLDTNRVV 257
Query: 194 -AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
++ + E ++++ + G HN NA ++ D E + + ++
Sbjct: 258 FSRNGNEEFSC-------NVNDILIRGEHNIQNAMAVIIAAKIFDFKN--EKIIAALKTF 308
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
R HR++ V ++I+G+ +++DSKATN+++ L ++LGG K G + +
Sbjct: 309 RGVEHRLEFV-KEIEGIKFINDSKATNIDSVIVALKSF-DEPIFLILGGLDK---GNDYS 363
Query: 313 GFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 372
E+L+ + + + G S I+ N + ++++ V A A GD
Sbjct: 364 TIEELV--IKKVQKIYAIGSSAEKIFNYFHN---KVKTEIRKDLEEVVASALSEARAGDV 418
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQEL 398
++LSP CASFD F N+EHRG VF+E+
Sbjct: 419 VLLSPACASFDMFENYEHRGKVFKEI 444
>gi|108804332|ref|YP_644269.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rubrobacter
xylanophilus DSM 9941]
gi|118595689|sp|Q1AVX1.1|MURD_RUBXD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|108765575|gb|ABG04457.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rubrobacter
xylanophilus DSM 9941]
Length = 440
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 116/357 (32%), Positives = 173/357 (48%), Gaps = 28/357 (7%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
++ AVTGTNGK+TVV +L G+ V GN L+ C+ + V V
Sbjct: 103 RVAAVTGTNGKTTVVDMARHILRVAGVAHAVAGNSWRALT----GCL---EEVRRAGVLV 155
Query: 104 VEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162
+EVSS+Q+ +P F V+ +LN+ PDHL H + + YA K +F L LL
Sbjct: 156 LEVSSFQLHHLPPPGF--EVAALLNVRPDHLNWHSSFEEYARDKLRVFGGQGPGDLALLS 213
Query: 163 FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ A G R + +G + +T + + + + +L G HN
Sbjct: 214 ADDPICRRAAGGLRAEVVLVG-----EGETGVRDGRLLLRGEFLAGEREL---GFAGGHN 265
Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
NA AA + +G +EA+ + R PHRMQ+V + GVT++DDSKATN A
Sbjct: 266 LKNALFAAAAAA--RLGAGLEAIREALRGYRLKPHRMQVVAEE-GGVTYIDDSKATNPAA 322
Query: 283 TCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLV 342
L+ L G V++LGG K + FE+++ L R V+ G +G + + +
Sbjct: 323 VAAALLSLGGRPAVLILGGSEKETD------FEEVLPHLGGCRAVVCQGEAGPRL-RDFL 375
Query: 343 NNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
+ ++ AV ARR+A GDA++LSPGCASFD+F +E RG F LA
Sbjct: 376 SERWGGEVVLAGDLASAVEAARRLARPGDAVLLSPGCASFDQFSGYEERGEAFARLA 432
>gi|169351140|ref|ZP_02868078.1| hypothetical protein CLOSPI_01919 [Clostridium spiroforme DSM 1552]
gi|169292202|gb|EDS74335.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
spiroforme DSM 1552]
Length = 452
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 112/385 (29%), Positives = 187/385 (48%), Gaps = 27/385 (7%)
Query: 21 LLQSGKR---VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+L+ KR V +E++ A QV + + VTGTNGK+T VT + ++L + GN
Sbjct: 84 ILRLKKRNIPVYTEIELAYQVAKKQ-HYIGVTGTNGKTTTVTLIDKILKGQYQNVHLAGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G PL + L V+E+S++Q+ + F P VS ++NLTPDHL+
Sbjct: 143 VGMPLCDIVLDHNLLEEEN---HYIVIEMSNFQL-LDIDTFKPNVSTIINLTPDHLDYMA 198
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
++ Y +K +++ + ++ +Q L++ +K + I + D K
Sbjct: 199 SLDEYYASKTNIYKNTNKNDCFVVNLDDQVLDKYLKQYPIPCKQITMSLDNQADCMIKDK 258
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+ ++ L ++K++G HN N +A D V E +N I H
Sbjct: 259 AIYYQNEFIID---LDDIKLVGNHNLQNIMIAICIAKKCD--VKNEIINQEIASFIGVEH 313
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R++ V ++I G+ +DSKATN +A+ L K ++L+GG K L+ +E + +
Sbjct: 314 RIEFV-KEINGIKIYNDSKATNTDASIIALKAFK-QPVILLMGGFDKGLDLKEMSTYSNK 371
Query: 318 IEPLNHHRCVITFGYSGVLIWKTL-VNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLS 376
I+ L +TFG +G + V N + V N+K+A A AT GD ++LS
Sbjct: 372 IKRL------VTFGAAGKRFKDEMHVENSI-----CVKNLKEATLEAINNATAGDIVLLS 420
Query: 377 PGCASFDEFRNFEHRGMVFQELAFS 401
P +SFDEF +E RG VF+E+ S
Sbjct: 421 PSTSSFDEFSGYEQRGNVFKEIVCS 445
>gi|347758651|ref|YP_004866213.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Micavibrio
aeruginosavorus ARL-13]
gi|347591169|gb|AEP10211.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Micavibrio
aeruginosavorus ARL-13]
Length = 467
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 124/375 (33%), Positives = 185/375 (49%), Gaps = 46/375 (12%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K + +TGTNGKST +G +LN G+ A VGGN+G AA I LP PK V V
Sbjct: 115 KTIGITGTNGKSTTTALIGHILNAGGVTASVGGNIG----RAALD-IELP---PKDGVIV 166
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SSYQ+++ F P + V +NLTPDHL+RH M YA K +F +G+
Sbjct: 167 LELSSYQLDL-CPTFAPDIGVHMNLTPDHLDRHGDMAGYAAAKMRIFRGAGAAIIGVDDE 225
Query: 164 GNQHLNEAIK--GHR--FNLAWIGAFP-GVKIDTEA--KTASFEVPAVGVVSQLQLHNMK 216
++ + + ++ G R + ++ + A GV + E +G VS L
Sbjct: 226 PSRAMFKQVQDTGDRDVYAISVVNAVERGVYVSNGVLFDCMDGEAREIGSVSALT----T 281
Query: 217 VMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDD 274
+ G HN+ N AA A + GL D + + + I+ PHR Q + R I GV +V+D
Sbjct: 282 LPGVHNHQNICAAYIATRLSGL----DADTIMNAIKTYPGLPHR-QFMTRVINGVAYVND 336
Query: 275 SKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP-LNHHRCVITFGYS 333
SKATN +AT L+ + + C I + G+ +G +EP ++ R G +
Sbjct: 337 SKATNADATAKALVCYR-NICWI--------VGGKPKDGGLNGLEPFMDRVRKAFVIGAA 387
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVN--HARRMATNGD-----AIVLSPGCASFDEFR 386
K L N+G+ + AVN H A G+ ++LSP CASFD+FR
Sbjct: 388 MDDFCKWLDNHGVEY--VRSETLDRAVNDAHITAQAARGEPGGAGVVLLSPACASFDQFR 445
Query: 387 NFEHRGMVFQELAFS 401
+FEHRG F ++ +
Sbjct: 446 SFEHRGDEFTKMVMA 460
>gi|91786971|ref|YP_547923.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polaromonas sp.
JS666]
gi|118595672|sp|Q12EL7.1|MURD_POLSJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|91696196|gb|ABE43025.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polaromonas sp.
JS666]
Length = 587
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 125/388 (32%), Positives = 184/388 (47%), Gaps = 61/388 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE---AAFHCIALPSSKPKFQV 101
+LA+TGTNGK+TV + VGQ++ G V GN+G L + A LP QV
Sbjct: 209 VLAITGTNGKTTVTSLVGQLVQRAGKTVAVAGNIGPTLLDTLSAHLDADTLP------QV 262
Query: 102 AVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS---------- 151
V+E+SS+Q+ + F PT +VVLN+T DHL+ H M Y K +F
Sbjct: 263 WVLELSSFQL-ADAQDFEPTAAVVLNVTQDHLDWHGDMDAYVAAKARIFGRSTFMLLNRD 321
Query: 152 -----HMVNT--KLGLLP--------FG-------NQHLNEAIKGHRFNLAWIGAFPGVK 189
M+ T K+ L P FG + E + G +AW+ +
Sbjct: 322 DPRVMEMLPTPVKVRLRPPQVRPHSTFGAGEPQRPGDYGIETVNG----MAWL--VRAAQ 375
Query: 190 IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
D K E + + + L +++ GRHN NA A + + + +
Sbjct: 376 ADETIKRRKGEEVELHIQRLMPLDALRIRGRHNATNALAALGLAVAAGCSL--APMLHGL 433
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILLGGQAKVLNG 308
R PHR++ + + V + DDSK TN+ AT L L K V++LGG+ K G
Sbjct: 434 REYRGEPHRVESIAV-VNDVEYFDDSKGTNVGATAAALAGLGAERKLVVILGGEGK---G 489
Query: 309 QESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA 367
Q+ F L EP++HH R V+ G LI L + +++ A+M++AV+ A A
Sbjct: 490 QD---FSPLAEPVSHHARAVVLIGKDAPLIRSALQASQVAL--LDAASMQEAVSLAAAQA 544
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVF 395
GDA+++SP CASFD F N+EHR VF
Sbjct: 545 HTGDAVLMSPACASFDMFDNYEHRAQVF 572
>gi|421863476|ref|ZP_16295173.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379066|emb|CBX22368.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 445
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 119/388 (30%), Positives = 192/388 (49%), Gaps = 40/388 (10%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKAGVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNADDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + G + ++ + G H + A V A L +G+ EAL ++ +
Sbjct: 253 TGRLK---QGDEDLIATQDIPLQGLH--NAANVMAAVALCEAVGLPREALLEHVKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
PHR++ + + GV ++DDSK TN+ AT + L+ + ++LGG K GQ+ F
Sbjct: 308 PHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGK---GQD---FT 359
Query: 316 KLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 374
L + L + + V G I + L GL++ A +++AV A A GD ++
Sbjct: 360 PLRDALKDKAKGVFLIGVDAPQIRRDLDGCGLNMT--DCATLEEAVQTAYARAEAGDIVL 417
Query: 375 LSPGCASFDEFRNFEHRGMVFQELAFSA 402
LSP CASFD F+ + HR VF E AF A
Sbjct: 418 LSPACASFDMFKGYAHRSEVFIE-AFKA 444
>gi|354582291|ref|ZP_09001193.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus
lactis 154]
gi|353199690|gb|EHB65152.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus
lactis 154]
Length = 477
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 121/413 (29%), Positives = 198/413 (47%), Gaps = 70/413 (16%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
++ G V++E++ A + + ++ +TG+NGK+T T+VGQ+L G+ V GN+G P
Sbjct: 93 MELGVPVVTEVEVAYHIC--AAPMIGITGSNGKTTTTTWVGQLLEDAGLSPIVAGNIGTP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
LSEAA + P + VVE+SS+Q++ + F P ++ +LN+ HL+ H M +
Sbjct: 151 LSEAAQE------ANPDNWM-VVELSSFQLK-GTEDFRPRIAALLNIAETHLDYHGGMDD 202
Query: 142 YALTKCHLFSHMVNT-------------------KLGLLPFGNQHLNEAIKGHRFNLAWI 182
Y +K LF++ K +LPF +NE ++ + +
Sbjct: 203 YIASKAKLFANQTADDTAVLNWDDPVCRSLVPYIKARILPF---SMNEVLREGVYVMPPY 259
Query: 183 GA---FPGVK------IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV 233
GA PG + + T+ K + E+ +++ N+ + GR N NA A S
Sbjct: 260 GAEGQMPGGEEPERTVVYTDEKGFTHEI--------IRVENIGLPGRFNVGNALAA--SA 309
Query: 234 LGLDIGVDVEALNSTIEILRTPPHRMQIV-HRDIQGVTWVDDSKATNLEATCTGLMDLKG 292
+ + GV + L + R HR++ V RD G+ + ++SKATN +AT L K
Sbjct: 310 IAITAGVSPDRLEPVLSSFRGVEHRLEFVDERD--GIAYYNNSKATNSKATNMALTSFK- 366
Query: 293 HKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCF 351
V++ GG + + +E+L+ L + V+ G + I GL
Sbjct: 367 EPVVLIAGGLDR------GSDYEELVPSLRERVKAVVLLGQTKEKIAAAAEKAGLK-QII 419
Query: 352 AVANMKD-------AVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
V N KD AV A R+A GD ++LSP CAS+D F +FE RG +F+E
Sbjct: 420 LVDNGKDAADTLTMAVQEAARLAEPGDIVLLSPACASWDMFPSFEVRGRIFKE 472
>gi|429740559|ref|ZP_19274243.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Porphyromonas
catoniae F0037]
gi|429160767|gb|EKY03217.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Porphyromonas
catoniae F0037]
Length = 459
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 112/396 (28%), Positives = 201/396 (50%), Gaps = 38/396 (9%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + + + G V+SE++ A + + K++ +TG+NGK+T ++ +L+ G+
Sbjct: 79 KAPIMQAIREQGIPVISEIELAGRYLKG--KVIGITGSNGKTTTTMWLHHILSEAGLRVG 136
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+G L+ + ++P++ VVE+SS+Q++ + Y F +++++N+TPDH
Sbjct: 137 LAGNVGFSLARQV-----ITDNQPEY--FVVELSSFQLD--DMYQFRVHIALLMNITPDH 187
Query: 133 LER-HKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR---FNLAWIGAFPGV 188
L+R H + YAL K + + + ++ ++ + H+ +L +P V
Sbjct: 188 LDRYHYNFEEYALAKMRILQNQTEEDAFIYWGEDEFVSRYVMMHQPMPMHLLPFLTYPQV 247
Query: 189 -----KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVE 243
K D FE G + + + + G HN NA A S+ L IGV +
Sbjct: 248 GSAADKSDDNMMRLHFE----GKSFEFPIDQLALQGPHNLQNAMAA--SIAALHIGVSED 301
Query: 244 ALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQA 303
L +E PHR++ V + GV +++DSKATN+ +T L + V++LGG+
Sbjct: 302 VLTRALEDFVNVPHRLEKVGV-LDGVRYINDSKATNISSTYYALRTMTT-PYVLILGGED 359
Query: 304 KVLNGQESNGFEKLIEPLNHHRCVITFGYSGVL-IWKTLVNNGLSIPCFAVANMKDAVNH 362
K N + + E + + F + VL ++K +G + +M++A+ H
Sbjct: 360 K------GNDYLDITEQIVSGARGLIFLTTDVLKLYKAF--HGKVKHIASALSMEEAIAH 411
Query: 363 ARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
AR+MA GD ++LSP CASFD F ++ HRG F+E+
Sbjct: 412 ARQMAQPGDTVLLSPACASFDLFTSYIHRGDCFREI 447
>gi|404475939|ref|YP_006707370.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
pilosicoli B2904]
gi|404437428|gb|AFR70622.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brachyspira
pilosicoli B2904]
Length = 463
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 106/381 (27%), Positives = 199/381 (52%), Gaps = 37/381 (9%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
+V+ E++FA +IP ++VTGT+GK+T V + +++ +A + GN+GN S+
Sbjct: 108 KVIGEIEFAYNLIPDR-NYISVTGTDGKTTTVNLIYSIISSYK-KARLLGNVGNTFSKEV 165
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
S K + V+E+SS+Q+E + F +SV+LN+ DHL+R+ +++Y K
Sbjct: 166 -------ESIEKDEDIVLELSSFQLETVHN-FHSHISVILNIAEDHLDRYDDIEDYFNAK 217
Query: 147 CHLFSHMVNTKLGLL----PFGNQHLNEAIKGH--RFNLAWIGAF---PGVKIDTEAKTA 197
++ + + +L + N++ NE IK FN+ + ++E +
Sbjct: 218 KNITKNQNSNDFLILNYDNSYTNRYYNELIKTKDISFNVLTFSTKCKKANLYYNSEDECL 277
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+ + +++ QL +G HN N + L+ L +I V E ++ + ++ H
Sbjct: 278 YYNGEKLFSIAKRQL-----LGMHNIENILASVLACLKDNIPV--EYIDKAVNNFKSIEH 330
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R++ V ++I GV +++DSKAT++ A + L + ++++GG+ K G + + +
Sbjct: 331 RLEFV-KEINGVKYINDSKATSMSAVMSALKSFDKN-IILIMGGRNK---GIDFKPLKSI 385
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
IE + ++T S L V+N + I F +A ++A+++A GD ++LSP
Sbjct: 386 IEE-RVKKLILTGEASEDLNKMIDVSNKIIIKDFT-----EAFDYAKKIAVKGDTVLLSP 439
Query: 378 GCASFDEFRNFEHRGMVFQEL 398
GCASFD F+N+E RG F+ L
Sbjct: 440 GCASFDSFKNYEERGKYFKSL 460
>gi|398898348|ref|ZP_10648268.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM50]
gi|398184402|gb|EJM71855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM50]
Length = 448
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 119/362 (32%), Positives = 179/362 (49%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDIELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNL--AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L AF G++ + K +FE + + + +KV
Sbjct: 221 ---SRPLMGEGQPCWTFGLNKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVRELKVR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S + HR Q V RD+ GV + +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSALRNFAGLEHRCQWV-RDLDGVGYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D+ G K V++ GG K G E F+ L +P+ + R VI G
Sbjct: 329 NVGAALAAIEGLGADIDG-KLVLIAGGDGK---GAE---FKDLRDPVAANCRAVILMGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
I + + G +P V ++ +AV R +A GDA++LSP CASFD F+N+E RG
Sbjct: 382 SDKIGEAI---GDGVPLVRVGSLIEAVAQCRAIAEKGDAVLLSPACASFDMFKNYEDRGH 438
Query: 394 VF 395
F
Sbjct: 439 QF 440
>gi|296314335|ref|ZP_06864276.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
polysaccharea ATCC 43768]
gi|296838885|gb|EFH22823.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
polysaccharea ATCC 43768]
Length = 445
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 119/388 (30%), Positives = 191/388 (49%), Gaps = 40/388 (10%)
Query: 23 QSGKRVMSELDFAAQVIP-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNHRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKDKIFRGD----------GVQVLNADDAFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + + G + ++ + G H + A V A L +G+ EAL ++ +
Sbjct: 253 TGTLK---QGDEDLIATQDIPLQGLH--NAANVMAAVALCEAVGLPREALLEHVKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
PHR++ + GV ++DDSK TN+ AT + L+ + ++LGG K GQ+ F
Sbjct: 308 PHRVEKIGEK-NGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGK---GQD---FT 359
Query: 316 KLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 374
L + L + V G I + L GL++ A +++AV A A GD ++
Sbjct: 360 PLRDALAGKAKGVFLIGVDAPQIRRDLDGCGLNMT--DCATLEEAVQTAYAQAEAGDIVL 417
Query: 375 LSPGCASFDEFRNFEHRGMVFQELAFSA 402
LSP CASFD F+ + HR VF E AF A
Sbjct: 418 LSPACASFDMFKGYAHRSEVFIE-AFKA 444
>gi|255066179|ref|ZP_05318034.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sicca
ATCC 29256]
gi|255049724|gb|EET45188.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sicca
ATCC 29256]
Length = 445
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 119/388 (30%), Positives = 190/388 (48%), Gaps = 40/388 (10%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA L K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEA-----ELQREGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + G + ++ + G H + A V A L +G+ EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLH--NAANVMAAVALCEAVGLPREALLEHVKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
PHR++ + + GV ++DDSK TN+ AT + L+ + ++LGG K GQ+ F
Sbjct: 308 PHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGK---GQD---FT 359
Query: 316 KLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 374
L + L + V G I + L +G + A +++AV A A GD ++
Sbjct: 360 PLRDALAGKAKGVFLIGVDAPQIRRDL--DGCDLNMTDCATLEEAVQTAYAQAEAGDIVL 417
Query: 375 LSPGCASFDEFRNFEHRGMVFQELAFSA 402
LSP CASFD F+ + HR VF E AF A
Sbjct: 418 LSPACASFDMFKGYAHRSEVFIE-AFKA 444
>gi|398859371|ref|ZP_10615048.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM79]
gi|398237066|gb|EJN22829.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM79]
Length = 448
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 118/362 (32%), Positives = 181/362 (50%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDIELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNL--AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L AF G++ + K +FE + + + +KV
Sbjct: 221 ---SRPLMGEGQPCWTFGLNKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVRELKVR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S + HR Q V R++ GV++ +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSALRNFAGLEHRCQWV-RELNGVSYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D+ G K V++ GG K G E F+ L +P+ + R VI G
Sbjct: 329 NVGAALAAIEGLGADIDG-KLVLIAGGDGK---GAE---FKDLRDPVAANCRAVILMGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
I + + G ++P V ++ +AV R +A GDA++LSP CASFD F+N+E RG
Sbjct: 382 SDKIGEAI---GDAVPLIRVGSLIEAVAQCRAIAEKGDAVLLSPACASFDMFKNYEDRGH 438
Query: 394 VF 395
F
Sbjct: 439 QF 440
>gi|169343170|ref|ZP_02864191.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
perfringens C str. JGS1495]
gi|169298722|gb|EDS80798.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
perfringens C str. JGS1495]
Length = 458
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 112/371 (30%), Positives = 186/371 (50%), Gaps = 50/371 (13%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K+ VTG++GK+T T V ++L+ G + + GGN+G PL F I + K V
Sbjct: 118 KVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPL----FSNIEEIKEEDK---VV 170
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+ + V++V N+TP+HL+ HK M+ Y K ++F + L ++
Sbjct: 171 LELSSFQLMTMDAEI--DVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLVIND 228
Query: 164 GNQ---HLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ--LQLHNMKVM 218
N+ +L++ KG + F K TE + A ++ + V + + ++ +
Sbjct: 229 ENEITKNLDKEAKGK------VVRFSSKK--TEGEDAYYKDGKLYVHGKEVCKKDDIIIK 280
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN N A L+V V +E++ E HR + + R++ GV + +DS A+
Sbjct: 281 GMHNVENYLAAFLAVYD---EVSIESMKKVAETFGGVHHRCEFI-REVDGVKYYNDSIAS 336
Query: 279 NLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI--EPLNHH-----RCVITFG 331
T GL K VILL G G++K + EPL + + ++ FG
Sbjct: 337 TPTRTLAGLKAF--EKPVILLAG-----------GYDKHVPFEPLAYEGYEKIKAIVLFG 383
Query: 332 YSGVLI---WKTLVNN-GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ I +K L G+ +P ++ ++++ VN A+ +A NGD I LSP CASFD F+N
Sbjct: 384 VTKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVNIAKSIAENGDIITLSPACASFDMFKN 443
Query: 388 FEHRGMVFQEL 398
FE RG F+E+
Sbjct: 444 FEVRGDKFKEI 454
>gi|392389974|ref|YP_006426577.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ornithobacterium
rhinotracheale DSM 15997]
gi|390521052|gb|AFL96783.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ornithobacterium
rhinotracheale DSM 15997]
Length = 444
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 109/399 (27%), Positives = 196/399 (49%), Gaps = 52/399 (13%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + +++SE++FA+ + I +A+TG+NGK+T + + ML G +
Sbjct: 76 KAALIQKLRKQNVKIISEIEFASWFTQKPI--IAITGSNGKTTTTSLIAHMLRKAGKKVG 133
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDH 132
+GGN+G +E + + ++ V+E+SS+Q++ I N F P V+++LN+TPDH
Sbjct: 134 LGGNIGYSFAELVLN-------DEEHELYVLELSSFQLDDIDN--FKPHVAILLNITPDH 184
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID 191
L+++ + Y K + + + + E +K H +G +K +
Sbjct: 185 LDQYDYDIDKYGEAKLRIAKNQTEEDFFIYNVDDPKTVELLKKHTIKAKMLGY--SLKDE 242
Query: 192 TEAKTASFE--VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALS--VLGLDIGVDVEALNS 247
+ A+ E + +++L + ++G HN N+ +AL+ +L L + E+L
Sbjct: 243 HQPAYANEENLILTYPETFRMKLEELALLGEHNVSNSLASALNGNILKLRKKIIQESLTD 302
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLN 307
HR++ V ++G+ +++DSKATN+ AT L +K V ++GG+ K
Sbjct: 303 ----FDAVEHRLEPV-LSVRGIEFINDSKATNINATFYALQSMK-KPTVWIVGGKDK--- 353
Query: 308 GQESNGFEKLIEPL--NHHRCVITFGYSGVLIWKTLVNNGLSIPCF--------AVANMK 357
N + +LI PL + ++ G V+N + C+ +M+
Sbjct: 354 ---GNDYSELI-PLVKKKVKAIVCLG----------VDNSKIVECYRDIVPNITETKSME 399
Query: 358 DAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
DAV A NGD ++LSP CASFD F N+E RG +F+
Sbjct: 400 DAVKAAYEYGENGDTVLLSPACASFDLFENYEQRGKLFK 438
>gi|294670612|ref|ZP_06735490.1| hypothetical protein NEIELOOT_02336 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307651|gb|EFE48894.1| hypothetical protein NEIELOOT_02336 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 445
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 121/388 (31%), Positives = 190/388 (48%), Gaps = 40/388 (10%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A V+ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADVVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA L K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEA-----ELQREGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKDKIFRGG----------GVQVLNADDAFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + ++S ++ + G H + A V A L G+ EAL I+ +
Sbjct: 253 TGRLKQGNEDLIST---QDIPLQGLH--NAANVMAAVALCEAAGLPREALLEHIKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
PHR++ + + GV ++DDSK TN+ AT + L+ + ++LGG K GQ+ F
Sbjct: 308 PHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGK---GQD---FT 359
Query: 316 KLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 374
L + L + V G I + L +G + A +++AV A A GD ++
Sbjct: 360 PLRDALAGKAKGVFLIGVDAPQIRRDL--DGCDLNMTDCATLEEAVQKAYTQAEAGDIVL 417
Query: 375 LSPGCASFDEFRNFEHRGMVFQELAFSA 402
LSP CASFD F+ + HR VF E AF A
Sbjct: 418 LSPACASFDMFKGYAHRSEVFIE-AFKA 444
>gi|344200892|ref|YP_004785218.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
ferrivorans SS3]
gi|343776336|gb|AEM48892.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
ferrivorans SS3]
Length = 448
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 122/377 (32%), Positives = 183/377 (48%), Gaps = 32/377 (8%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q+G +M +++ ++ SI +A+TG+NGKSTV T +G+M + G+ A VGGNLG P
Sbjct: 88 QAGIEIMGDIELFGRIARTSI--VAITGSNGKSTVTTLLGEMAHAAGLHAAVGGNLGTPA 145
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ LP + P+ ++ V+E+SS+Q+ ++F P + +LNL+PDHL+ H Y
Sbjct: 146 LD------LLPETGPEPELYVLELSSFQLA-SCQHFHPCAAAILNLSPDHLDWHGGYTAY 198
Query: 143 ALTKCHLFSHMVNTKLGLL----PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
K +F M +L PF + G + F G D +A TA
Sbjct: 199 GSAKARIFQAMGAGDTLVLNAEDPFTAALPAQVPAGVQLR------FFGRADDRDAYTAD 252
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
++ L L + + G HN NA AAL +DI + A+ + PHR
Sbjct: 253 DQLCLRTDGPLLALDQLLLRGGHNTENALAAALLARAVDI--PLTAIRQALRNFSGLPHR 310
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+ + ++ GV + DDSK TNL AT + L G V++LGG AK + L
Sbjct: 311 LAWI-AEVNGVNYYDDSKGTNLGATLKAMSGLPG-PLVMILGGDAKGAD------LSPLR 362
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
E R I G G I L + +P A +M AV A +MA +GD ++LSP
Sbjct: 363 EACRGQRGAIVLGKDGPHIAALLAD---VLPVHAANSMPAAVRAAAQMAQSGDQVLLSPA 419
Query: 379 CASFDEFRNFEHRGMVF 395
CAS D F +++ RG F
Sbjct: 420 CASTDMFTDYQDRGRQF 436
>gi|395492283|ref|ZP_10423862.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
PAMC 26617]
Length = 355
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 118/377 (31%), Positives = 172/377 (45%), Gaps = 51/377 (13%)
Query: 28 VMSELDFAAQV---IPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
++ +++ AQ +PR K++ +TGTNGKST V +L I + +GGN+G P+ E
Sbjct: 19 ILGDIELFAQARSDLPRH-KVVGITGTNGKSTTTALVHHILQTAKIPSLMGGNIGLPILE 77
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
P+ V V+E+SSYQ+++ C V+V+LN+TPDHL+R+ YA
Sbjct: 78 Q--------QPLPEGGVYVLELSSYQIDLTQSLDC-DVAVLLNVTPDHLDRYDGFDAYAA 128
Query: 145 TKCHLFSHMVNTKLGLLPFGNQH---LNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
+K LF ++ G+ + ++ L I PGV +D
Sbjct: 129 SKARLFEMQSPGHAAIIGIGDTPSALIARSLSARGEQLTKIA--PGVCMD---------- 176
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
Q + G HN NA A L GV A++ + PHRM+
Sbjct: 177 ---------QSRWPSLQGPHNAQNALAAIAVAQAL--GVSEAAIDEGLRSFTGLPHRMER 225
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V R GV WV+DSKATN E+T L + +LGG+AK S+ +
Sbjct: 226 V-RTHNGVAWVNDSKATNPESTAPALAAFD--RIHWILGGEAK------SDDLDACAPQF 276
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
H T G +G L +P ++ AV A R A GD ++LSP CAS
Sbjct: 277 GHIASAYTIGAAGPRFAAILAGK---VPVEQCGDLATAVAAAARSAAPGDTVLLSPACAS 333
Query: 382 FDEFRNFEHRGMVFQEL 398
FD+FR+FE RG F+ L
Sbjct: 334 FDQFRDFEDRGNQFRTL 350
>gi|224541556|ref|ZP_03682095.1| hypothetical protein CATMIT_00726 [Catenibacterium mitsuokai DSM
15897]
gi|224525523|gb|EEF94628.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Catenibacterium
mitsuokai DSM 15897]
Length = 446
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 109/391 (27%), Positives = 191/391 (48%), Gaps = 48/391 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G V +E++ +V + +AVTGTNGK+T VT + ++L G +A + GN G
Sbjct: 87 LKERGIPVYTEIELGYKVAKKQ-HYIAVTGTNGKTTTVTLIYEILKAAGRKAHICGNYGI 145
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P E + VVE+S++Q+ I + F P V+ VLNLTPDHL+ ++
Sbjct: 146 PYCEVVLNEHLYEEEGHDI---VVEMSNFQL-IDIEEFKPEVATVLNLTPDHLDYMDSLD 201
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFE 200
Y +K ++ + L F N +E ++ +++ +P ++ +F
Sbjct: 202 EYYASKMRIYMNQDEKDL----FINNSDDETLQ------SYLAKYP-----VPSRIETFS 246
Query: 201 VPAVGVVS------------QLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
V G V + +K++G HN N VA + +GV +++++ T
Sbjct: 247 VKGQGDVELKDNAIYYKGQKVIDRDEIKIVGLHNVANMMVAIAACAS--VGVSLDSIHDT 304
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG 308
+ + HR++ V R++ GV + +DSK TN +A + + ++L+GG K L+
Sbjct: 305 LAAFKGVEHRIEFV-RELDGVRYYNDSKGTNTDAAVIAIKAFE-KPVILLMGGHEKNLDL 362
Query: 309 QESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIP-CFAVANMKDAVNHARRMA 367
++ LI+ L I FG + K + ++ P V +MKDA+ A+ +A
Sbjct: 363 KDVREQNPLIKTL------ICFGET-----KERFSKDMAHPHTIVVDHMKDAILKAKEIA 411
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
GD ++LSP +SFDEF ++ RG VF+++
Sbjct: 412 KEGDVVLLSPSTSSFDEFHSYVERGNVFKDI 442
>gi|357031775|ref|ZP_09093718.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Gluconobacter
morbifer G707]
gi|356415005|gb|EHH68649.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Gluconobacter
morbifer G707]
Length = 448
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 112/361 (31%), Positives = 175/361 (48%), Gaps = 51/361 (14%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
+ ++VTGTNGKST + +L+ G+ GGNLG +ALP P V V
Sbjct: 113 RFVSVTGTNGKSTTTALIAHLLDVAGLACAAGGNLGTA-------SLALPL-LPDQGVYV 164
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SSY +E ++Y + + +LNLTPDHL+RH M+ YA K H+F +M L ++
Sbjct: 165 LEMSSYMLERLDRYHA-SAACLLNLTPDHLDRHGDMEGYAAAKAHVFDNMTGDDLAVIGQ 223
Query: 164 GN---QHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT-ASFEVPAVGVVSQLQLHNMKVMG 219
+ + + E++ +A + EA + ++ PA+ G
Sbjct: 224 DDVWCRRIAESVAARGIPVASL----------EADSLPPYDAPAL-------------PG 260
Query: 220 RHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATN 279
RHN N A A V L I D+ + + ++ HR+Q V + +G+++V+DSKATN
Sbjct: 261 RHNVQNIAAAWKIVRHLGISDDM--VRAGLKTFGGLEHRLQKVAK-CEGISFVNDSKATN 317
Query: 280 LEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWK 339
EA L + + + GG AK + G E L H G L+ +
Sbjct: 318 AEAASKALEAYD--RVMWIAGGMAK------AGGIESLAPWFGHVAHAFLIGRDASLLAR 369
Query: 340 TLVNNGLSIPCFAVANMKDAVNHARRMA--TNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
TL + ++P ++ AV A + A T D ++LSP CASFD+FR+FE RG F +
Sbjct: 370 TLEAH--NVPFTLCDTLEKAVPAAFKAAEQTQTDTVLLSPACASFDQFRSFEDRGSHFLQ 427
Query: 398 L 398
+
Sbjct: 428 I 428
>gi|323491031|ref|ZP_08096223.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
brasiliensis LMG 20546]
gi|323314695|gb|EGA67767.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
brasiliensis LMG 20546]
Length = 441
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 116/366 (31%), Positives = 180/366 (49%), Gaps = 51/366 (13%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV + GQ+ G++ VGGN+G P + + V+
Sbjct: 112 VIAITGSNGKSTVTDWTGQVAKATGLKVGVGGNIGVPALDLLTLDAD---------LYVL 162
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT--KL 158
E+SS+Q+E + P + LNLT DH++R++ M++Y K +F H +VN K
Sbjct: 163 ELSSFQLETTSS-LAPKAAAFLNLTEDHMDRYQGMEDYRQAKLRIFDHAQSCIVNAEDKQ 221
Query: 159 GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
N+HL E F+L F + D E A+ + + ++
Sbjct: 222 TYPDQNNKHLVE------FSLTDSTQFSVIDCD------GIEYLAMNGKQIIPAAELSLV 269
Query: 219 GRHNYHNAAV--AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
GRHN NA V A LS +G+DI ++AL S + HR Q+V D +G+ WV+DSK
Sbjct: 270 GRHNVANALVVLALLSQVGVDIEKGLDALKSYNGL----THRCQVV-ADNRGIKWVNDSK 324
Query: 277 ATNLEATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGV 335
ATN+ +T L L+ +L+GG K G + + +++ L+ C FG G
Sbjct: 325 ATNVASTMAALAGLELAGTLYLLVGGMGK---GADFSQLAPVLDKLDLQLCC--FGEDG- 378
Query: 336 LIWKTLVNNGLSIPCFA--VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
+ +S+ A ++M++ + T GD ++LSP CASFD+F NF RG
Sbjct: 379 -------DQFMSLHPSAQRFSSMEEIIQWLSPKVTAGDMVLLSPACASFDQFSNFMARGD 431
Query: 394 VFQELA 399
F ELA
Sbjct: 432 AFTELA 437
>gi|409417636|ref|ZP_11257669.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
sp. HYS]
Length = 448
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 112/361 (31%), Positives = 175/361 (48%), Gaps = 37/361 (10%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IIAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS---HMVNTKLGLL 161
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +V + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 162 PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRH 221
+ + N AF G++ + K +FE + + + +K+ G H
Sbjct: 221 SRPLLAEGQPVWTFGLNTPDFKAF-GLREENGEKYLAFEFHNL-----MPVRELKIRGAH 274
Query: 222 NYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE 281
N NA A LG +G+ ++A+ S++ HR Q + R+ GV W DDSKATN+
Sbjct: 275 NQSNALAA--LALGHAVGLPMDAMLSSLRSFAGLAHRCQWI-RERNGVNWYDDSKATNVG 331
Query: 282 ATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVL 336
A + D+ G K V++ GG K + F L P+ + R V+ G
Sbjct: 332 AALAAIEGLGADIDG-KLVLVAGGDGKGAD------FSALTAPVAANCRAVVLLGRDAER 384
Query: 337 IWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
+ + L G +P V + +AV +A GDA++LSP CAS D F+NFE RG +F
Sbjct: 385 LAEAL---GDGVPLIRVKTLDEAVQQCAELARPGDAVLLSPACASLDMFKNFEERGRLFA 441
Query: 397 E 397
+
Sbjct: 442 Q 442
>gi|167043605|gb|ABZ08299.1| putative Mur ligase family, catalytic domain protein [uncultured
marine microorganism HF4000_APKG2M17]
Length = 455
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 111/386 (28%), Positives = 191/386 (49%), Gaps = 35/386 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G + SE++ A+ I+A+TG+NGK+T +G + G FV GN+G P
Sbjct: 92 LSRGTSLYSEIEVASWFC--DAHIIAITGSNGKTTTTELLGHLFRKAGRNTFVCGNVGRP 149
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMK 140
S+ + P + V+EVSS+Q++ + F P VS++LN+TPDHL+R+ + +
Sbjct: 150 FSDDT------DRTGPD-DLVVLEVSSFQLDHIDS-FRPDVSILLNITPDHLDRYNQDID 201
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH-RFNLAWIGAFPGVKIDTEAKTASF 199
YA +K + + + ++ + ++ R +A G+ I E + F
Sbjct: 202 RYAASKLRICENQTGVDTFIFNQDDERIARFVRKRARGPIAL-----GISITEEIRATGF 256
Query: 200 EVPA---VGVVSQ----LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
+ + + Q + + + GRHN N+ AA++ ++ DV + ++
Sbjct: 257 LRNSDLMLRINDQEENLMPTEKLALRGRHNVFNSLAAAVAARVAEVRSDV--VRESLRSF 314
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
PHR++IV RDI GV +++DSKATN+ A L V++ GG+ K G + +
Sbjct: 315 EGVPHRLEIV-RDIDGVRYINDSKATNVNALWYALESFT-EPVVLIAGGRDK---GNDYS 369
Query: 313 GFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 372
G + L++ R +IT G + I L + ++ +AV A +A GD
Sbjct: 370 GLKSLVQ--TRVRALITIGEAAEAIQAEL--GEFTADGVTTESLDEAVRLAHLLARPGDV 425
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQEL 398
++LSP CASFD F ++EHRG F+++
Sbjct: 426 VLLSPACASFDMFDSYEHRGDQFKQI 451
>gi|331083028|ref|ZP_08332147.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
bacterium 6_1_63FAA]
gi|330399765|gb|EGG79426.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
bacterium 6_1_63FAA]
Length = 457
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 118/402 (29%), Positives = 200/402 (49%), Gaps = 51/402 (12%)
Query: 12 QLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE 71
Q+KA G+ V E++ A Q+ ++ LA+TGTNGK+T +G+++
Sbjct: 91 QIKAVGIP--------VWGEIELAYQMSAGTV--LAITGTNGKTTTTALLGEIMKAYADS 140
Query: 72 AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPD 131
FV GN+GNP ++AA L ++ + VA E+SS+Q+E + F P VS +LN+T D
Sbjct: 141 VFVVGNIGNPYTDAA-----LSMTEDSYTVA--EISSFQLETIDT-FAPKVSAILNITED 192
Query: 132 HLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--------- 182
HL RH TM+ Y K + ++ +L + ++ L G R +
Sbjct: 193 HLNRHHTMEEYIRVKELITANQTKEDYCILNYEDEVLRAF--GERCPAKTVFFSSERKLG 250
Query: 183 -GAF-PGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240
GAF G I + T + E+ G +K++G+HNY N V A S + GV
Sbjct: 251 KGAFLDGDAICLKTDTETLEIVKTG--------ELKILGKHNYEN--VMAASAMAYYTGV 300
Query: 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG 300
VE ++ I R HR++ V +I G+ + +DSK TN +A G+ + ++ +L+G
Sbjct: 301 PVEVIHKAITEFRAVAHRIEFVD-EINGIAYYNDSKGTNPDAAIKGIQAM--NRPTLLIG 357
Query: 301 GQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDA 359
G + + +E+ I+ + + ++ G + I + G + N+++A
Sbjct: 358 G-----GYDKESSYEEWIQSFDGKVKYLVLIGQTREKIQEVAHKCGF-VNTILADNLEEA 411
Query: 360 VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 401
V+ + A GDA++LSP CAS+ +F N+E RG F+E ++
Sbjct: 412 VSICTQKAEKGDAVLLSPACASWGQFDNYEQRGDKFKEYVYA 453
>gi|349574826|ref|ZP_08886759.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
shayeganii 871]
gi|348013614|gb|EGY52525.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
shayeganii 871]
Length = 445
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 112/358 (31%), Positives = 173/358 (48%), Gaps = 38/358 (10%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
KI+A+TG+NGK+TV + VG + G++ V GN+G P+ EA P+ V V
Sbjct: 113 KIIAITGSNGKTTVTSLVGHLCAQAGLDTVVAGNIGTPVLEAYLQRAGKPAD-----VWV 167
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+E + +V LN++ DHL+R+ + +YA +K +F+ L
Sbjct: 168 LELSSFQLETTPE-LDADAAVCLNISEDHLDRYDDLLDYARSKDAIFNGQGVQVLNADDV 226
Query: 164 GNQHLNEAIKGHR-FNLAWIGAFP----GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ + A + R F+L G + +K D EA + E+P +
Sbjct: 227 FCRAMKRAGREVRWFSLHGQGGYALHAGDLKADGEAMMRAAEIP--------------LQ 272
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN N A G IG+ +AL + + + PHR+++V + GV ++DDSK T
Sbjct: 273 GSHNAANVLAALALCEG--IGLPRDALLAGVRSFQGLPHRVELVA-EKNGVRFIDDSKGT 329
Query: 279 NLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLI 337
N+ ATC + L V++ GGQ K GQ+ F L E L R V+ G +
Sbjct: 330 NVGATCAAIAGLDA-PIVLVAGGQGK---GQD---FTPLREALKGKVRGVVLIGADAAQV 382
Query: 338 WKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
+ L G F ++ A A +MA GD ++LSP CAS+D F + HR VF
Sbjct: 383 GRDLAGCGAEPEYF--DDLPAATRRAYQMAEPGDIVLLSPACASYDMFEGYAHRAQVF 438
>gi|168206854|ref|ZP_02632859.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
perfringens E str. JGS1987]
gi|170661761|gb|EDT14444.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
perfringens E str. JGS1987]
Length = 458
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 112/371 (30%), Positives = 181/371 (48%), Gaps = 50/371 (13%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K+ VTG++GK+T T V ++L+ G + + GGN+G PL F I + K V
Sbjct: 118 KVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPL----FSNIEEIKEEDK---VV 170
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+ + V++V N+TP+HL+ HK M+ Y K ++F + L ++
Sbjct: 171 LELSSFQLMTMDVEI--DVAIVTNITPNHLDMHKDMQEYIYAKKNVFKYQRENDLLVIND 228
Query: 164 GNQ---HLNEAIKGH--RFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
N+ +L++ KG RF+ D + EV + N+ +
Sbjct: 229 ENEITKNLDKEAKGKVVRFSSKKTKGEDAYYKDGKLYVHGKEV--------CKKDNIIIK 280
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN N A L+V V +E++ E HR + + R++ GV + +DS A+
Sbjct: 281 GMHNVENYLAAFLAVYD---EVSIESMKKVAETFGGVHHRCEFI-REVDGVKYYNDSIAS 336
Query: 279 NLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI--EPLNHH-----RCVITFG 331
T GL K VILL G G++K + EPL + + ++ FG
Sbjct: 337 TPTRTLAGLKAF--EKPVILLAG-----------GYDKHVPFEPLAYEGYEKIKAIVLFG 383
Query: 332 YSGVLI---WKTLVNN-GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ I +K L G+ +P ++ ++++ VN A+ +A NGD I LSP CASFD F+N
Sbjct: 384 VTKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVNIAKSIAENGDIITLSPACASFDMFKN 443
Query: 388 FEHRGMVFQEL 398
FE RG F+E+
Sbjct: 444 FEVRGDKFKEI 454
>gi|255527653|ref|ZP_05394513.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
carboxidivorans P7]
gi|296186918|ref|ZP_06855319.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
carboxidivorans P7]
gi|255508666|gb|EET85046.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
carboxidivorans P7]
gi|296048632|gb|EFG88065.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
carboxidivorans P7]
Length = 458
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 122/390 (31%), Positives = 186/390 (47%), Gaps = 48/390 (12%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G + SE++ + P K+ VTG++GK+T T + +L G + +VGGN+G PL
Sbjct: 99 KQGAYITSEMEEFIKYCP--AKVYGVTGSDGKTTTTTLIYNILKQQGYKTWVGGNIGTPL 156
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
F I S K V+E+SS+Q+ N P V+VV NL+P+HL+ HK M+ Y
Sbjct: 157 ----FTEIEKMKSDDK---VVLELSSFQLMTMN--VSPEVAVVTNLSPNHLDIHKDMQEY 207
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT-ASFEV 201
+K ++F + + L +L N N FN A G I + K A FE
Sbjct: 208 IDSKKNIFKYQQSESLLILNRDNNLTN-----SMFNEAK-GRVLEFSIKEKVKDGAYFEE 261
Query: 202 PAVGVVSQ--LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ + + +L+ +++ G HN N +AA + D V++E + T HR
Sbjct: 262 NKLYIKEKEVCKLNEIQIKGMHNVENL-LAAFCAVSDD--VNIENMRKTAISFTGVEHRC 318
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI- 318
+ + R+I GV + +DS AT+ T GL K VIL+ G G++K I
Sbjct: 319 EFI-REIDGVKYYNDSIATSPSRTLAGLKAF--EKPVILIAG-----------GYDKKIP 364
Query: 319 ------EPLNHHRCVITFGYSGVLIW----KTLVNNGLSIPCFAVANMKDAVNHARRMAT 368
E + + +I G + I K + + IP +++ A++ AR A
Sbjct: 365 LDVLAEEGYENIKALILVGATKDKIKDAFSKVMKKKNIEIPMVIEESLEKALSSARGFAK 424
Query: 369 NGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
GD I LSP CASFD F NFE RG F+EL
Sbjct: 425 EGDIITLSPACASFDMFPNFEARGNKFKEL 454
>gi|313667815|ref|YP_004048099.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
lactamica 020-06]
gi|313005277|emb|CBN86710.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
lactamica 020-06]
Length = 445
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 119/388 (30%), Positives = 192/388 (49%), Gaps = 40/388 (10%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVWGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----RAGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKDKIFRGD----------GVQVLNADDAFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + G + ++ + G H + A V A L +G+ EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLH--NAANVMAAVALCEAVGLPREALLEHVKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
PHR++ + + GV ++DDSK TN+ AT + L+ + ++LGG K GQ+ F
Sbjct: 308 PHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGK---GQD---FT 359
Query: 316 KLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 374
L + L + + V G I + L GL++ A +++AV A A GD ++
Sbjct: 360 PLRDALKDKAKGVFLIGVDAPQIRRDLDGCGLNLT--DCATLEEAVQTAYAQAEAGDIVL 417
Query: 375 LSPGCASFDEFRNFEHRGMVFQELAFSA 402
LSP CASFD F+ + HR VF E AF A
Sbjct: 418 LSPACASFDMFKGYAHRSEVFIE-AFKA 444
>gi|422347524|ref|ZP_16428435.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
perfringens WAL-14572]
gi|373223794|gb|EHP46138.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
perfringens WAL-14572]
Length = 458
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 112/371 (30%), Positives = 186/371 (50%), Gaps = 50/371 (13%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K+ VTG++GK+T T V ++L+ G + + GGN+G PL F I + K V
Sbjct: 118 KVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPL----FSNIEEIKEEDK---VV 170
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+ + V++V N+TP+HL+ HK M+ Y K ++F + L ++
Sbjct: 171 LELSSFQLMTMDVEI--DVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLVIND 228
Query: 164 GNQ---HLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ--LQLHNMKVM 218
N+ +L++ KG + F K TE + A ++ + V + + ++ +
Sbjct: 229 ENEITKNLDKEAKGK------VVRFSSKK--TEGEDAYYKDGKLYVNGKEVCKKDDIIIK 280
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN N A L+V V +E++ E HR + + R++ GV + +DS A+
Sbjct: 281 GMHNVENYLAAFLAVYD---EVSIESMKKVAETFGGVHHRCEFI-REVDGVKYYNDSIAS 336
Query: 279 NLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI--EPLNHH-----RCVITFG 331
T GL K VILL G G++K + EPL + + ++ FG
Sbjct: 337 TPTRTLAGLKAF--EKPVILLAG-----------GYDKHVPFEPLAYEGYEKIKAIVLFG 383
Query: 332 YSGVLI---WKTLVNN-GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ I +K L G+ +P ++ ++++ VN A+ +A NGD I LSP CASFD F+N
Sbjct: 384 VTKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVNIAKSIAENGDIITLSPACASFDMFKN 443
Query: 388 FEHRGMVFQEL 398
FE RG F+E+
Sbjct: 444 FEVRGDKFKEI 454
>gi|327399667|ref|YP_004340536.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hippea maritima
DSM 10411]
gi|327182296|gb|AEA34477.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hippea maritima
DSM 10411]
Length = 435
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 118/374 (31%), Positives = 182/374 (48%), Gaps = 35/374 (9%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
+++SEL+ + KI+A+TGTNGKST V V ++L GN G PLSEA
Sbjct: 79 KLISELELGYRYAKG--KIIAITGTNGKSTTVALVERILKGASKRVIACGNYGLPLSEAI 136
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ + VVE SSYQ+E +K F P ++ +LN+ DHL H +M NY K
Sbjct: 137 YENA---------EYYVVEASSYQLEFIDK-FKPNIAAILNIAFDHLSWHGSMDNYIEAK 186
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
+F + + F + I + NL + K D A FE V V
Sbjct: 187 KKIFKNQLEDDF----FIKNDSDSYIFDGKANLFLVS-----KRDRNA-DCFFEKNGVIV 236
Query: 207 --VSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
L++ + G + N A AAL +GL G++ + + + + HR++ V
Sbjct: 237 NRPEYLRIDKTGLFGSKVFENIAFAAL--IGLLCGIEKKTIKEVVGTMSNLEHRIEFVD- 293
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDL-KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
+I GV + +DSKATNL+A + +G K VI+LGG+ K G+ + L+E
Sbjct: 294 EIDGVKFYNDSKATNLDAVEAAINSFDEGIKIVIILGGKHK---GESYSRLLPLLE--KR 348
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 383
R V+ +G +I L + L +P AV N+ AV A +A+ D ++ SPG +S +
Sbjct: 349 ARAVVVYGEDRKVILNEL-DGFLPVPLPAV-NIWGAVRAAFEVASKDDVVLFSPGGSSCE 406
Query: 384 EFRNFEHRGMVFQE 397
++NFE RG F++
Sbjct: 407 PYKNFEERGEAFKK 420
>gi|167626512|ref|YP_001677012.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
philomiragia subsp. philomiragia ATCC 25017]
gi|189082909|sp|B0TZ72.1|MURD_FRAP2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|167596513|gb|ABZ86511.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
philomiragia subsp. philomiragia ATCC 25017]
Length = 414
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 112/378 (29%), Positives = 182/378 (48%), Gaps = 52/378 (13%)
Query: 26 KRVMSELDFAAQVIPRS-IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
++++S++D Q I + K++AVTG+NGKST+VT + +L +G ++ + GN+G P
Sbjct: 79 QKIVSDIDLFYQSIRNTKAKMIAVTGSNGKSTIVTMLDFVLRDMGYKSILVGNIGTP--- 135
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
L KF VVEVSS+Q+++ N + V+N++ DHL+R+K + Y
Sbjct: 136 ------PLNKIGEKFDYCVVEVSSFQIDLFNS-VEFDLGCVVNVSLDHLDRYKNYEEYK- 187
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+KL L F + H + + G + V+ T
Sbjct: 188 ----------QSKLNLAKFSKDFFVYDV--HNTGIKYAGEYQIVRGSIYKDTTKL----- 230
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
L + + G HN N V L++ G+D+ + I+ + HR +IV +
Sbjct: 231 -----LDITETNLFGEHNLENIIVV-LNIFDR-FGIDISKAVAAIKKFKGLKHRCEIV-K 282
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL-GGQAKVLNGQESNGFEKLIEPLNH 323
+I GVT+++DSK TN+ AT L + K +ILL GG AK F + + L
Sbjct: 283 NIAGVTYINDSKGTNVGATIAALNSITSSKNIILLLGGVAK------GGDFSLMSKSLAK 336
Query: 324 H-RCVITFGYSGVLIWKTLVNNGLSIPC-FAVAN-MKDAVNHARRMATNGDAIVLSPGCA 380
+ + V +G K + N + C + + N MKDA A + A + + ++LSP CA
Sbjct: 337 YVKYVYLYGQD-----KEYIENYIKDMCRYQICNDMKDAFRLASQKAQDSEIVLLSPACA 391
Query: 381 SFDEFRNFEHRGMVFQEL 398
SFDEF + RG VF++L
Sbjct: 392 SFDEFSGYAERGEVFEKL 409
>gi|404403189|ref|ZP_10994773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
fuscovaginae UPB0736]
Length = 448
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 116/363 (31%), Positives = 176/363 (48%), Gaps = 41/363 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+N KSTV T VG+M G VGGNLG P AL + V+
Sbjct: 111 IVAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLGDDIDLYVL 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E + V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTEQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGAKQVVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
++E + F L F GV+ + K FE + + +H +K+
Sbjct: 221 ---SRPLMSEGLPCWTFGLGKPDFKTF-GVREENGEKYLGFEFQNL-----MPVHELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S++ HR Q V R+ GV + +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSSLRTFAGLEHRCQWV-REHHGVNYYNDSKAT 328
Query: 279 NLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSG 334
N+ A + L G K V++ GG K + F L P+ + R V+ G
Sbjct: 329 NVGAALAAIEGLGADIGGKLVLIAGGDGKGAD------FSALRAPVVANCRAVVLLGRDA 382
Query: 335 VLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMV 394
L+ + L G +P V + +AV + +A +GDA++LSP CAS D F+NFE RG +
Sbjct: 383 ELLAQAL---GDEVPLIRVQTLDEAVQRSAELAHSGDAVLLSPACASLDMFKNFEERGRL 439
Query: 395 FQE 397
F +
Sbjct: 440 FAQ 442
>gi|291542832|emb|CBL15942.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruminococcus
bromii L2-63]
Length = 463
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 116/389 (29%), Positives = 181/389 (46%), Gaps = 31/389 (7%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L G + SE++ + P +I+AVTG++GK+T T + + L G +GGN
Sbjct: 93 LVALRNKGVVLTSEMEVFFDLCP--CRIIAVTGSDGKTTTTTIISEFLKAAGFNVHLGGN 150
Query: 78 LGNPLSEAAFHCIALPS--SKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLER 135
+G PL LP S AVVE+SS+Q+ K P ++VV NL P+HL+
Sbjct: 151 IGKPL---------LPEIESVNDDDCAVVELSSFQLISMRK--SPDIAVVTNLAPNHLDI 199
Query: 136 HKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAK 195
HK M+ Y +K ++ H +L N+ N + R LA V
Sbjct: 200 HKDMQEYIDSKKNIILHQNAFSKAVLNLDNEITNGFSESVRGQLAKFSVKENVSNGAFLD 259
Query: 196 TASFEVPAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
+ G +++ + +H++K+ G HN N A +V GL VD E + + +
Sbjct: 260 GDTICYNDYGKITRIMNIHDIKIPGMHNVENYLAAISAVWGL---VDAETMTAVAKTFGG 316
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGF 314
HR + V R++ GV + +DS A++ T G + L K I+ GG K + +
Sbjct: 317 VAHRAEFV-REVDGVKYYNDSIASSPTRTALGTLSLYKQKICIIAGGYDKHI------PY 369
Query: 315 EKLIEPLNHH-RCVITFGYSGVLIWKTLVN----NGLSIPCFAVANMKDAVNHARRMATN 369
E L +N + +I G + I K + + I V NM++AV AR +T
Sbjct: 370 EPLGPVINDKVKLLILLGDTAPKIEKAVKEASNYDADEIEIVNVTNMEEAVAVARERSTK 429
Query: 370 GDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
GD + LSP ASF ++NFE RG F+ +
Sbjct: 430 GDIVSLSPASASFGLYKNFEERGNHFKSI 458
>gi|357633649|ref|ZP_09131527.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio sp.
FW1012B]
gi|357582203|gb|EHJ47536.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio sp.
FW1012B]
Length = 442
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 121/395 (30%), Positives = 178/395 (45%), Gaps = 48/395 (12%)
Query: 6 LFLLEFQLKATGLACLLQS--GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQ 63
L +L ++A L L + G +V+SEL+ A+ + I+AVTG+NGK+T V +
Sbjct: 78 LVVLSPGIRAASLTDCLAACPGAQVVSELELASWFT--AEPIVAVTGSNGKTTTVMLISH 135
Query: 64 MLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVS 123
+L G + F GGN+G PLSE + P V V+EVSS+Q+++ + F P V
Sbjct: 136 LLEAAGRKVFTGGNIGTPLSEYVL------AGDPA-DVVVLEVSSFQLQL-VRTFRPRVG 187
Query: 124 VVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG 183
V+LN +P+HL+ H + Y K +LF L L+P + L E + G + +
Sbjct: 188 VLLNFSPNHLDWHADLDEYLDAKLNLFKAQRPGDLALVP---EELRETLAGRTLSKGEVV 244
Query: 184 AFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVE 243
F A + F P ++ G HN N A L+ GV E
Sbjct: 245 WF--------APSGRFHCP-------------RLAGLHNRQNMEAAYLAC--QPFGVTEE 281
Query: 244 ALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQA 303
+ E PHR+QI+ + +GV +VDDSKAT + A L +L GG
Sbjct: 282 TAKAAFESFAPAPHRLQIIG-EKRGVLFVDDSKATTVAAMEAALKSFD-RPVRLLCGG-- 337
Query: 304 KVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHA 363
V G + L++ V FG S + +P F K AV
Sbjct: 338 -VWKGGDLAALLPLLK--GKVASVGLFGASREIFEAAWAGQ---VPLFYEPTQKAAVTRL 391
Query: 364 RRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
A GD I+LSP ASFD + +++ RG FQE+
Sbjct: 392 FAEAVPGDVILLSPATASFDLYDSYKARGRDFQEI 426
>gi|429124553|ref|ZP_19185085.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
hampsonii 30446]
gi|426279564|gb|EKV56586.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
hampsonii 30446]
Length = 471
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/382 (27%), Positives = 193/382 (50%), Gaps = 37/382 (9%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
+++ E++FA +P +AVTGT+GK+T VT V ++++ +A + GN+GN S+
Sbjct: 111 KIIGEIEFAYNFLPNR-NYIAVTGTDGKTTTVTLVHKIISSYK-KARLVGNVGNTFSKE- 167
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ + +P + V+E+SS+Q+E K F ++ VLN+ DHL+R+K + +Y TK
Sbjct: 168 -----IETIEPDEDI-VLELSSFQLETVEK-FHAHIAAVLNIAEDHLDRYKDIDDYFNTK 220
Query: 147 CHLFSHMVNTKLGLLPFGN-------QHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
++ + +L + N LN K + F + + E + +
Sbjct: 221 KNIAINQNKNDFLILNYDNIYTNIWYNELNNNCKMKLLTFSLKSKFADIYYNEEDEYIYY 280
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
E + + + K++G+HN N A L L I VD+ + T+ + HR+
Sbjct: 281 ENEKL-----FSIADRKLIGKHNIANILAAVLICLKDKIPVDI--IEKTVNNFKGIEHRV 333
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319
++V +I GV +++DSKAT++ + + L ++++GG+ K ++ N +IE
Sbjct: 334 ELV-AEINGVKYINDSKATSMNSVMSALKSF-DKDIILIMGGRNKNIDFTSLNN---IIE 388
Query: 320 PLNHHRCVITFGYSGVLIWKTL-VNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
+ +I G + + + + N + I F DA +A ++ +GD ++LSPG
Sbjct: 389 S--RVKKLILIGEAADALNEMIHFENKIIIKDFT-----DAFYYASAISISGDTVLLSPG 441
Query: 379 CASFDEFRNFEHRGMVFQELAF 400
CASFD F+N+E RG F+ L +
Sbjct: 442 CASFDMFKNYEERGKYFKSLVY 463
>gi|395445253|ref|YP_006385506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
putida ND6]
gi|388559250|gb|AFK68391.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
putida ND6]
Length = 450
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 121/368 (32%), Positives = 175/368 (47%), Gaps = 47/368 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 113 IIAISGSNAKSTVTTLVGEMAAKAGKRVAVGGNLGTP---------ALDLLADDIELYVL 163
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 164 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 222
Query: 161 ---LPF-GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
LP G + F AF ++D E K +FE + + +K
Sbjct: 223 SRPLPVEGRPCWTFGLNSPDFK-----AFGLREVDGE-KYLAFEFQTL-----MPARELK 271
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
V G HN NA A G+ E + + + HR Q V R+ GV W DDSK
Sbjct: 272 VRGAHNQSNALAALALG--HAAGLPFEPMLAALREFGGLAHRCQWV-RERNGVNWYDDSK 328
Query: 277 ATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFG 331
ATN+ A + D++G K V++ GG K G E F L EP+ R V+ G
Sbjct: 329 ATNVGAALAAIEGLGADIEG-KLVLIAGGDGK---GAE---FTALREPVKRFCRAVVLLG 381
Query: 332 YSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 391
+ + L G ++P V + DAV +A GDA++LSP CAS D F+NFE R
Sbjct: 382 RDAERLAEAL---GDAVPLVRVKTLDDAVQQCAELAQAGDAVLLSPACASLDMFKNFEER 438
Query: 392 GMVFQELA 399
G +F + A
Sbjct: 439 GRLFAQAA 446
>gi|389685757|ref|ZP_10177080.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pseudomonas
chlororaphis O6]
gi|388550099|gb|EIM13369.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pseudomonas
chlororaphis O6]
Length = 448
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 116/364 (31%), Positives = 179/364 (49%), Gaps = 47/364 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y HL H + + F
Sbjct: 162 ELSSFQLETTDQ-LGAEVATVLNISEDHMDRYSGLPAY-----HLAKHRIFRGARQVVFN 215
Query: 165 NQH------LNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
Q + E + F L+ AF G++ + K +FE + + + +K
Sbjct: 216 RQDALTRPLIGEGLPCWTFGLSKPDFKAF-GLREENGEKYLAFEFQNL-----MPVRELK 269
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
+ G HN NA A G +G+ +A+ S + HR Q V RD+ GV + +DSK
Sbjct: 270 IRGAHNQSNALAALAL--GHAVGLPFDAMLSALRTFAGLEHRCQWV-RDLDGVGYYNDSK 326
Query: 277 ATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFG 331
ATN+ A + D++G K V++ GG K G E F+ L +P+ + R VI G
Sbjct: 327 ATNVGAALAAIEGLGADIEG-KIVLIAGGDGK---GAE---FKDLRDPVAANCRAVILMG 379
Query: 332 YSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 391
I + + G ++P V ++ +AV R A GD ++LSP CASFD F+N+E R
Sbjct: 380 RDSDKIGEAI---GDAVPLIRVGSLVEAVAQCRATAQAGDVVLLSPACASFDMFKNYEDR 436
Query: 392 GMVF 395
G F
Sbjct: 437 GHQF 440
>gi|148549594|ref|YP_001269696.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
putida F1]
gi|148513652|gb|ABQ80512.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas putida
F1]
Length = 450
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 121/368 (32%), Positives = 175/368 (47%), Gaps = 47/368 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 113 IIAISGSNAKSTVTTLVGEMAAKAGKRVAVGGNLGTP---------ALDLLADDIELYVL 163
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 164 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 222
Query: 161 ---LPF-GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
LP G + F AF ++D E K +FE + + +K
Sbjct: 223 SRPLPVEGRPCWTFGLNSPDFK-----AFGLREVDGE-KYLAFEFQTL-----MPARELK 271
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
V G HN NA A G+ E + + + HR Q V R+ GV W DDSK
Sbjct: 272 VRGAHNQSNALAALALG--HAAGLPFEPMLAALREFGGLAHRCQWV-RERNGVNWYDDSK 328
Query: 277 ATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFG 331
ATN+ A + D++G K V++ GG K G E F L EP+ R V+ G
Sbjct: 329 ATNVGAALAAIEGLGADIEG-KLVLIAGGDGK---GAE---FTALREPVKRFCRAVVLLG 381
Query: 332 YSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 391
+ + L G ++P V + DAV +A GDA++LSP CAS D F+NFE R
Sbjct: 382 RDAERLAEAL---GDAVPLVRVKTLDDAVQQCAELAQAGDAVLLSPACASLDMFKNFEER 438
Query: 392 GMVFQELA 399
G +F + A
Sbjct: 439 GRLFAQAA 446
>gi|168218219|ref|ZP_02643844.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
perfringens NCTC 8239]
gi|182379758|gb|EDT77237.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
perfringens NCTC 8239]
Length = 458
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 112/371 (30%), Positives = 186/371 (50%), Gaps = 50/371 (13%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K+ VTG++GK+T T V ++L+ G + + GGN+G PL F I + K V
Sbjct: 118 KVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPL----FSNIEEIKEEDK---VV 170
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+ + V++V N+TP+HL+ HK M+ Y K ++F + L ++
Sbjct: 171 LELSSFQLMTMDVEI--DVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLVIND 228
Query: 164 GNQ---HLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ--LQLHNMKVM 218
N+ +L++ KG + F K TE + A ++ + V + + ++ +
Sbjct: 229 ENEITKNLDKEAKGK------VVRFSSKK--TEGEDAYYKDGKLYVHGKEVCKKDDIIIK 280
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN N A L+V V +E++ E HR + + R++ GV + +DS A+
Sbjct: 281 GMHNVENYLAAFLAVYD---EVSIESMKKVAETFGGVHHRCEFI-REVDGVKYYNDSIAS 336
Query: 279 NLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI--EPLNHH-----RCVITFG 331
T GL K VILL G G++K + EPL + + ++ FG
Sbjct: 337 TPTRTLAGLKAF--EKPVILLAG-----------GYDKHVPFEPLAYEGYEKIKAIVLFG 383
Query: 332 YSGVLI---WKTLVNN-GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ I +K L G+ +P ++ ++++ VN A+ +A NGD I LSP CASFD F+N
Sbjct: 384 ITKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVNIAKSIAENGDIITLSPACASFDMFKN 443
Query: 388 FEHRGMVFQEL 398
FE RG F+E+
Sbjct: 444 FEVRGDKFKEI 454
>gi|398930636|ref|ZP_10664701.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM48]
gi|398164946|gb|EJM53070.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM48]
Length = 448
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 116/362 (32%), Positives = 179/362 (49%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL + ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLRDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGAKQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNL--AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLMGEGQPCWTFGLNKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S++ HR Q V RD+ GV + +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSSLRTFAGLEHRCQWV-RDLDGVGYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D+ G K V++ GG K G E F+ L +P+ + R VI G
Sbjct: 329 NVGAALAAIEGLGADIDG-KVVLIAGGDGK---GAE---FKDLRDPVAANCRAVILMGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
I + + G ++P ++ +AV R A GD ++LSP CASFD F+N+E RG
Sbjct: 382 SDKIGEAI---GDAVPLIRAGSLVEAVEQCRAAAQPGDVVLLSPACASFDMFKNYEDRGH 438
Query: 394 VF 395
F
Sbjct: 439 QF 440
>gi|375131958|ref|YP_004994058.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio furnissii
NCTC 11218]
gi|315181132|gb|ADT88046.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio furnissii
NCTC 11218]
Length = 439
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 122/369 (33%), Positives = 173/369 (46%), Gaps = 57/369 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G M N GI VGGN+G P A +A P+ ++ V+
Sbjct: 110 VIAITGSNGKSTVTDLTGVMANAAGIATAVGGNIGVP----ALDLLAQPA-----ELYVL 160
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E + T + LNL+ DH++R+ M Y K +F H +VN
Sbjct: 161 ELSSFQLETTSS-LAVTAAAFLNLSEDHMDRYDGMTGYRQAKLRIFEHAQTAVVNAD--- 216
Query: 161 LPFGNQHLNEAIKGH--RFNLAWIGAFPGVKID-TEAKTASFEVPAVGVVSQLQLHNMKV 217
Q +A G RF L F + D E A+ EV L ++ +
Sbjct: 217 ---DTQTYPDAYSGRTVRFGLEQSAEFTTAQHDGKEVLLANGEV-------VLPTSDLSL 266
Query: 218 MGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDS 275
+GRHN N +A L G++ + AL S + HR Q+V D QG+ WV+DS
Sbjct: 267 VGRHNVANVLTVLALLDAAGVNYTNTLPALKSYTGLT----HRCQVV-ADNQGIKWVNDS 321
Query: 276 KATNLEATCTGLMDLKGHKCVILL-GGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSG 334
KATN+ +T L L + + LL GG K G + + ++E L C FG G
Sbjct: 322 KATNVASTLAALSGLTLNGTLYLLVGGVGK---GADFTPLKPVLETLPLTLCC--FGRDG 376
Query: 335 VLIWKTLVNNGLSIPCFAVAN----MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEH 390
+P A A M+ + R GD ++LSP CASFD+F+NF
Sbjct: 377 DQF----------MPLHASAQRFDTMEAIIASIRPQLKAGDMVLLSPACASFDQFKNFMA 426
Query: 391 RGMVFQELA 399
RG VF ELA
Sbjct: 427 RGDVFAELA 435
>gi|312885132|ref|ZP_07744816.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
caribbenthicus ATCC BAA-2122]
gi|309367205|gb|EFP94773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
caribbenthicus ATCC BAA-2122]
Length = 441
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 122/412 (29%), Positives = 195/412 (47%), Gaps = 55/412 (13%)
Query: 5 WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + G+A +L SG V+ +++ A ++A+TG+NGKSTV
Sbjct: 67 WLLNADLVVTNPGIALATPEIQQVLASGIPVVGDIELFAW--DNDKPVIAITGSNGKSTV 124
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
+ GQ L+ G++ VGGN+G P AL + + + V+E+SS+Q+E +
Sbjct: 125 TDWTGQALSAAGLDVAVGGNIGVP---------ALDLLQHQADIYVLELSSFQLETTSS- 174
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQHLNEAI 172
V+V LNL+ DH++R+++M +Y K +F + +VN + P + E
Sbjct: 175 LKSKVAVFLNLSEDHMDRYRSMDDYRNAKLRIFDNADVRIVNADDIATYPLKDSSYLEFS 234
Query: 173 KGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALS 232
+ + A + T+ F + V+S ++ ++GRHN N V
Sbjct: 235 LDKKTDFA---------VTTQDDVEFFTLQGKKVLSTSEI---SLVGRHNVSNCLV---- 278
Query: 233 VLGL--DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL 290
VL L +GVD+E I+ HR Q+V D G+ WV+DSKATNL +T L L
Sbjct: 279 VLALLHSVGVDIERALPVIKSYSGLTHRCQVV-LDNGGIKWVNDSKATNLASTKAALTGL 337
Query: 291 KGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIP 349
+ K +L+GG +K G + + +++ LN C FG G L
Sbjct: 338 RMEGKLFLLVGGVSK---GADFSELAPILKNLNVQLCC--FGQDGDAFM------SLHPS 386
Query: 350 CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 401
++ + ++ GD ++LSP CASFD+F+NF RG F ELA S
Sbjct: 387 AKRFESINEIIHWISGQMKRGDVVMLSPACASFDQFKNFMARGDEFTELARS 438
>gi|421522851|ref|ZP_15969491.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
putida LS46]
gi|402753344|gb|EJX13838.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
putida LS46]
Length = 448
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 121/368 (32%), Positives = 175/368 (47%), Gaps = 47/368 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IIAISGSNAKSTVTTLVGEMAAKAGKRVAVGGNLGTP---------ALDLLADDIELYVL 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 ---LPF-GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
LP G + F AF ++D E K +FE + + +K
Sbjct: 221 SRPLPVEGRPCWTFGLNSPDFK-----AFGLREVDGE-KYLAFEFQTL-----MPARELK 269
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
V G HN NA A G+ E + + + HR Q V R+ GV W DDSK
Sbjct: 270 VRGAHNQSNALAALALG--HAAGLPFEPMLAALREFGGLAHRCQWV-RERNGVNWYDDSK 326
Query: 277 ATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFG 331
ATN+ A + D++G K V++ GG K G E F L EP+ R V+ G
Sbjct: 327 ATNVGAALAAIEGLGADIEG-KLVLIAGGDGK---GAE---FTALREPVKRFCRAVVLLG 379
Query: 332 YSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 391
+ + L G ++P V + DAV +A GDA++LSP CAS D F+NFE R
Sbjct: 380 RDAERLAEAL---GDAVPLVRVKTLDDAVQQCAELAQAGDAVLLSPACASLDMFKNFEER 436
Query: 392 GMVFQELA 399
G +F + A
Sbjct: 437 GRLFAQAA 444
>gi|397697094|ref|YP_006534977.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas putida
DOT-T1E]
gi|397333824|gb|AFO50183.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas putida
DOT-T1E]
Length = 446
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 121/368 (32%), Positives = 175/368 (47%), Gaps = 47/368 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 109 IIAISGSNAKSTVTTLVGEMAAKAGKRVAVGGNLGTP---------ALDLLADDIELYVL 159
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 160 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 218
Query: 161 ---LPF-GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
LP G + F AF ++D E K +FE + + +K
Sbjct: 219 SRPLPVEGRPCWTFGLNSPDFK-----AFGLREVDGE-KYLAFEFQTL-----MPARELK 267
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
V G HN NA A G+ E + + + HR Q V R+ GV W DDSK
Sbjct: 268 VRGAHNQSNALAALALG--HAAGLPFEPMLAALREFGGLAHRCQWV-RERNGVNWYDDSK 324
Query: 277 ATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFG 331
ATN+ A + D++G K V++ GG K G E F L EP+ R V+ G
Sbjct: 325 ATNVGAALAAIEGLGADIEG-KLVLIAGGDGK---GAE---FTALREPVKRFCRAVVLLG 377
Query: 332 YSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 391
+ + L G ++P V + DAV +A GDA++LSP CAS D F+NFE R
Sbjct: 378 RDAERLAEAL---GDAVPLVRVKTLDDAVQQCAELAQAGDAVLLSPACASLDMFKNFEER 434
Query: 392 GMVFQELA 399
G +F + A
Sbjct: 435 GRLFAQAA 442
>gi|395209423|ref|ZP_10398517.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
sp. ACB8]
gi|394705054|gb|EJF12583.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
sp. ACB8]
Length = 448
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 111/378 (29%), Positives = 188/378 (49%), Gaps = 33/378 (8%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+ E++ A Q + K+ AVTGTNGK+T V+ +G++L + V GN+GNP + A
Sbjct: 91 VIGEIELAYQSLKG--KLCAVTGTNGKTTTVSLIGEILKSQYADTHVVGNIGNPFTAEAL 148
Query: 88 HCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
++ V EVSS+Q+E I + F P VS + N+TPDHL+RHKTMKNY K
Sbjct: 149 DTEEQSAT-------VCEVSSFQLESIVD--FRPHVSAITNITPDHLDRHKTMKNYIAVK 199
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLA----WIGAFPGVKIDTEAKTASFEVP 202
+ + +L + + L + G + NL W + K + F
Sbjct: 200 ESISINQTEEDSIVLNYMDPELRKF--GKKRNLKPKVLWFSSEEEPKEGFFLRDDEFIYK 257
Query: 203 AVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+ +L + +++++G+HNY N + + L +GV ++ + + + HR++
Sbjct: 258 SKDKEEKLFKTKDVQLLGKHNYEN--IMCSMAVALKMGVPMDKIIKVCKKFKPVEHRIEF 315
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN-GFEKLIEP 320
V R+ GV + +DSK TN++A L + G V+L+GG G + + F+ ++
Sbjct: 316 V-RERSGVRYYNDSKGTNVDAAIQALRAMPGP--VLLIGG------GYDKHVDFDAWVKE 366
Query: 321 LNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 379
+ ++ G + I +G FA +M +AV A GD ++LSP C
Sbjct: 367 FKGRVKYLVLIGETRNQIAACAKKHGFHNLMFA-EDMDEAVKDCAAYADPGDYVLLSPAC 425
Query: 380 ASFDEFRNFEHRGMVFQE 397
AS+ F+++E RG VF++
Sbjct: 426 ASWGMFKDYEERGRVFKD 443
>gi|85707764|ref|ZP_01038830.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter sp.
NAP1]
gi|85689298|gb|EAQ29301.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter sp.
NAP1]
Length = 460
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 112/362 (30%), Positives = 172/362 (47%), Gaps = 40/362 (11%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K++ +TGTNGKST V V +L GI + +GGN+G P+ L + V V
Sbjct: 110 KVVGITGTNGKSTTVALVHHILQMAGIPSLLGGNIGEPIMAQE----PLAPGEGGEGVYV 165
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SSYQ+++ C V+ + N+TPDHL+R+ YA K LF L + F
Sbjct: 166 LELSSYQIDLTTSLDC-EVAALTNITPDHLDRYDGFAAYAAAKERLFKMQSPRNLAV--F 222
Query: 164 GNQHLNEAIKG-HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
G+ L E + +R + + G + A+ A + + Q + + G HN
Sbjct: 223 GS--LEEPVGAIYRRQIEFRG-------EGRAQAADLDA-----LRDRQANWPSLQGPHN 268
Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
N AVA V ++GV + I R PHRM+IV + +GV +++DSKATN +A
Sbjct: 269 LENVAVAVAIVE--ELGVTEAQWSHAIPRFRGLPHRMEIVCEE-EGVLFINDSKATNTDA 325
Query: 283 TCTGLM-----DLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLI 337
+ L + + ++GG AK +G K E L T G +G
Sbjct: 326 SAPALAAYPRGEADRPRIHWIVGGLAK------EDGLGKCAEHLGDIAVAYTVGEAGPRF 379
Query: 338 WKTLVNNGLSIPCFAVANM-KDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
+ L +P + +AV A+ A GD ++ SP CASFD+FR++E RG F+
Sbjct: 380 AELLEGE---VPKVERCELVSEAVRRAKDAAVAGDVVLFSPACASFDQFRDYEKRGEHFR 436
Query: 397 EL 398
+L
Sbjct: 437 QL 438
>gi|297544895|ref|YP_003677197.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296842670|gb|ADH61186.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 454
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 196/383 (51%), Gaps = 33/383 (8%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q V E++FA + I A+TGTNGK+T + +G+M + G + +V GN+G PL
Sbjct: 90 QKKIEVFGEVEFAYRF--SKAPIYAITGTNGKTTTTSLLGEMFKNAGRKVYVAGNIGYPL 147
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
A + +S+ F VA E+SS+Q+E K F P +S ++N+TPDHL RHKT +NY
Sbjct: 148 IYAV-----MEASEDAFIVA--EISSFQLETI-KEFKPKISCIINITPDHLNRHKTFENY 199
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K +F + + +L F ++ + N A FP + ++ A +
Sbjct: 200 RDIKGRIFENQRENEYTVLNF-----DDPVTWSLKNKAKCRVFPFSRKNSLENGAYVKNG 254
Query: 203 AVGVVSQ------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
++ + + + + + G HN NA +AA SV L G+ V+ + +T++ +
Sbjct: 255 SIYISVDKNAKKIIDIEEIYIPGEHNLENA-LAASSVAYLS-GISVDVIANTLKTFKGVE 312
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK 316
HR++ V +I GV + +DSK TN +A+ + LK V++ GG K G E F++
Sbjct: 313 HRIEFVD-EINGVKFYNDSKGTNPDASIKAIQALK-PPIVLIAGGYDK---GSE---FDE 364
Query: 317 LIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVAN-MKDAVNHARRMATNGDAIV 374
++ N + +I G + I T A+ +++AV A A GD+++
Sbjct: 365 FVKAFNGKVKKLILIGQTAKKIKDTAKKYYYPEDDILFADTLEEAVKKAYESAKEGDSVL 424
Query: 375 LSPGCASFDEFRNFEHRGMVFQE 397
LSP CAS+D FRNF+ RG +F++
Sbjct: 425 LSPACASWDMFRNFDERGRIFKK 447
>gi|261364816|ref|ZP_05977699.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
mucosa ATCC 25996]
gi|288566851|gb|EFC88411.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
mucosa ATCC 25996]
Length = 445
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 120/388 (30%), Positives = 189/388 (48%), Gaps = 40/388 (10%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA L K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEA-----ELQRESKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + G + ++ + G H + A V A L +G+ EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLH--NAANVMAAVALCEAVGLPREALLEHVKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
PHR++ + GV ++DDSK TN+ AT + L+ + ++LGG K GQ+ F
Sbjct: 308 PHRVEKIGEK-NGVVFIDDSKGTNVGATAAAIAGLQ-NLLFVILGGMGK---GQD---FT 359
Query: 316 KLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 374
L L + V G I + L GL++ A +++AV A A GD ++
Sbjct: 360 PLRTALAGKAKGVFLIGVDAPQIRRDLDGCGLNMT--DCATLEEAVQTAYAQAEAGDIVL 417
Query: 375 LSPGCASFDEFRNFEHRGMVFQELAFSA 402
LSP CASFD F+ + HR VF E AF A
Sbjct: 418 LSPACASFDMFKGYAHRSEVFIE-AFKA 444
>gi|363898946|ref|ZP_09325457.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oribacterium sp.
ACB1]
gi|361959276|gb|EHL12563.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oribacterium sp.
ACB1]
Length = 454
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 111/378 (29%), Positives = 188/378 (49%), Gaps = 33/378 (8%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+ E++ A Q + K+ AVTGTNGK+T V+ +G++L + V GN+GNP + A
Sbjct: 97 VIGEIELAYQSLKG--KLCAVTGTNGKTTTVSLIGEILKSQYADTHVVGNIGNPFTAEAL 154
Query: 88 HCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
++ V EVSS+Q+E I + F P VS + N+TPDHL+RHKTMKNY K
Sbjct: 155 DTEEQSAT-------VCEVSSFQLESIVD--FRPHVSAITNITPDHLDRHKTMKNYIAVK 205
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLA----WIGAFPGVKIDTEAKTASFEVP 202
+ + +L + + L + G + NL W + K + F
Sbjct: 206 ESISINQTEEDSIVLNYMDPELRKF--GKKRNLKPKVLWFSSEEEPKEGFFLRDDEFIYK 263
Query: 203 AVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+ +L + +++++G+HNY N + + L +GV ++ + + + HR++
Sbjct: 264 SKDKEEKLFKTKDVQLLGKHNYEN--IMCSMAVALKMGVPMDKIIKVCKKFKPVEHRIEF 321
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN-GFEKLIEP 320
V R+ GV + +DSK TN++A L + G V+L+GG G + + F+ ++
Sbjct: 322 V-RERSGVRYYNDSKGTNVDAAIQALRAMPGP--VLLIGG------GYDKHVDFDAWVKE 372
Query: 321 LNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 379
+ ++ G + I +G FA +M +AV A GD ++LSP C
Sbjct: 373 FKGRVKYLVLIGETRNQIAACAKKHGFHNLMFA-EDMDEAVKDCAAYADPGDYVLLSPAC 431
Query: 380 ASFDEFRNFEHRGMVFQE 397
AS+ F+++E RG VF++
Sbjct: 432 ASWGMFKDYEERGRVFKD 449
>gi|422875404|ref|ZP_16921889.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
perfringens F262]
gi|380303615|gb|EIA15915.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
perfringens F262]
Length = 458
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 112/371 (30%), Positives = 186/371 (50%), Gaps = 50/371 (13%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K+ VTG++GK+T T V ++L+ G + + GGN+G PL F I + K V
Sbjct: 118 KVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPL----FSNIEEIKEEDK---VV 170
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+ + V++V N+TP+HL+ HK M+ Y K ++F + L ++
Sbjct: 171 LELSSFQLMTMDVEI--DVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLVIND 228
Query: 164 GNQ---HLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ--LQLHNMKVM 218
N+ +L++ KG + F K TE + A ++ + V + + ++ +
Sbjct: 229 ENEITKNLDKEAKGK------VVRFSSKK--TEGEDAYYKDGKLYVHGKEVCKKDDIIIK 280
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN N A L+V V +E++ E HR + + R++ GV + +DS A+
Sbjct: 281 GMHNVENYLAAFLAVYD---EVSIESMKKVAETFGGVHHRCEFI-REVDGVKYYNDSIAS 336
Query: 279 NLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI--EPLNHH-----RCVITFG 331
T GL K VILL G G++K + EPL + + ++ FG
Sbjct: 337 TPTRTLAGLKAF--EKPVILLAG-----------GYDKHVPFEPLAYEGYEKIKAIVLFG 383
Query: 332 YSGVLI---WKTLVNN-GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ I +K L G+ +P ++ ++++ VN A+ +A NGD I LSP CASFD F+N
Sbjct: 384 VTKEKIKAVFKRLEEEKGIHVPVYSGESLEEVVNIAKSIAENGDIITLSPACASFDMFKN 443
Query: 388 FEHRGMVFQEL 398
FE RG F+E+
Sbjct: 444 FEVRGDKFKEI 454
>gi|148240320|ref|YP_001225707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
sp. WH 7803]
gi|147848859|emb|CAK24410.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
WH 7803]
Length = 463
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 121/395 (30%), Positives = 181/395 (45%), Gaps = 38/395 (9%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L G RV E+ A + I + +TGTNGK+TV + +L H G+EA + GN
Sbjct: 86 LNALRAQGLRVRGEMSVAWDAL-SGIPWIGITGTNGKTTVTHLLQHVLAHAGLEAPMAGN 144
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G+ +E A L ++PK V+E+SSYQ+E + P + + LTPDHLERH
Sbjct: 145 VGHSAAELALEV--LQGTRPKPDWVVMEMSSYQIEAAGE-VSPRIGIWTTLTPDHLERHG 201
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH-----RFNLAWI-GAFPGVKID 191
T+ Y K L L + I+ H R L W+ GA G D
Sbjct: 202 TLAAYRAIKRGLLERAETPVL-------NADDADIRQHCGAWSRPGLRWVSGADDGPDKD 254
Query: 192 TEAKTASFEVPAVGVVSQ-----LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
+ + V A G VSQ + + G HN N + + L+ V ++
Sbjct: 255 SIHR---ISVNAQGWVSQGERPLFPADALPLPGDHNRQN--MLLATAAALEASVSASSIE 309
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVL 306
+ + PHR++ + + G+ +DSKATN +A GL ++ V+L GGQ K
Sbjct: 310 AALRCFTGVPHRLEPLG-SVGGIPVFNDSKATNYDAAAVGLRSVQA-PVVLLAGGQTK-- 365
Query: 307 NGQESNGFEKLIEPLNHHRC-VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR 365
+ +E L C V+ FG + + G S P A++ AV A
Sbjct: 366 ----QGDADPWLELLQSQVCGVVLFGAGAGELADLIETAGFSGPVMHHADLNAAVPQALS 421
Query: 366 MATNGDA--IVLSPGCASFDEFRNFEHRGMVFQEL 398
+A + +A ++LSP CASFD++ NFE RG F+ L
Sbjct: 422 LAKDFEAGSVLLSPACASFDQYPNFEARGDHFRRL 456
>gi|70732386|ref|YP_262142.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
protegens Pf-5]
gi|81174950|sp|Q4K6J1.1|MURD_PSEF5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|68346685|gb|AAY94291.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pseudomonas
protegens Pf-5]
Length = 448
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 116/372 (31%), Positives = 182/372 (48%), Gaps = 51/372 (13%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y HL H + + F
Sbjct: 162 ELSSFQLETTDQ-LGAEVATVLNISEDHMDRYSGLPAY-----HLAKHRIFRGARQVVFN 215
Query: 165 NQH------LNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
Q + E + F L+ AF G++ + K +FE + + + +K
Sbjct: 216 RQDALTRPLIGEGLPCWTFGLSKPDFKAF-GLREEDGEKYLAFEFQNL-----MPVRELK 269
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
+ G HN NA A G +G+ +A+ + + HR Q V RD+ GV + +DSK
Sbjct: 270 IRGAHNQSNALAALAL--GHAVGLPFDAMLAALRTFAGLEHRCQWV-RDLDGVAYYNDSK 326
Query: 277 ATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFG 331
ATN+ A + D++G K V++ GG K + F+ L P+ + R VI G
Sbjct: 327 ATNVGAALAAIEGLGADIEG-KIVLIAGGDGKGAD------FKDLRGPVAANCRAVILMG 379
Query: 332 YSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 391
I + + G ++P V ++++AV R A GD ++LSP CASFD F+N+E R
Sbjct: 380 RDSDQIGEAI---GDAVPLIRVGSLQEAVEQCRATAQPGDVVLLSPACASFDMFKNYEDR 436
Query: 392 GMVF----QELA 399
G F +ELA
Sbjct: 437 GHQFVRIVEELA 448
>gi|241760241|ref|ZP_04758337.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
flavescens SK114]
gi|241319352|gb|EER55817.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
flavescens SK114]
Length = 445
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 119/388 (30%), Positives = 190/388 (48%), Gaps = 40/388 (10%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA L K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEA-----ELQREGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKDKIFRGD----------GVQVLNADDVFCHAMKRAGREVKWFSLEHKADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + G + ++ + G H + A V A L +G+ EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLH--NAANVMAAVALCEAVGLPREALLEHVKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
PHR++ + + GV ++DDSK TN+ AT + L+ + ++LGG K GQ+ F
Sbjct: 308 PHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGK---GQD---FT 359
Query: 316 KLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 374
L + L + V G I + L +G + A +++AV A A GD ++
Sbjct: 360 PLRDALAGKAKGVFLIGVDAPQIRRDL--DGCDLNMTDCATLEEAVQTAYAQAEVGDIVL 417
Query: 375 LSPGCASFDEFRNFEHRGMVFQELAFSA 402
LSP CASFD F+ + HR VF E AF A
Sbjct: 418 LSPACASFDMFKGYAHRSEVFTE-AFKA 444
>gi|404252666|ref|ZP_10956634.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
PAMC 26621]
Length = 364
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 118/379 (31%), Positives = 173/379 (45%), Gaps = 55/379 (14%)
Query: 28 VMSELDFAAQV---IPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
++ +++ AQ +PR K++ +TGTNGKST V +L I + +GGN+G P+ E
Sbjct: 28 ILGDIELFAQARSDLPRH-KVVGITGTNGKSTTTALVHHILQTAKIPSLMGGNIGLPILE 86
Query: 85 AAFHCIALPSSKPKFQ--VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+P + V V+E+SSYQ+++ C V+V+LN+TPDHL+R+ Y
Sbjct: 87 ----------QQPLTEGGVYVLELSSYQIDLTQSLDC-DVAVLLNITPDHLDRYDGFDAY 135
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQH---LNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
A +K LF ++ G+ + ++ L I PGV +D
Sbjct: 136 AASKARLFEMQSPEHAAIIGIGDTPSALIARSLSARSEQLTKIA--PGVCMD-------- 185
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
Q + G HN NA A L GV A++ + PHRM
Sbjct: 186 -----------QSRWPSLQGPHNAQNALAAIAVAQAL--GVSEAAIDEGLRSFTGLPHRM 232
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319
+ V R GV WV+DSKATN E+T L + +LGG+AK S+ +
Sbjct: 233 ERV-RTHNGVAWVNDSKATNPESTAPALAAFD--RIHWILGGEAK------SDDLDACAP 283
Query: 320 PLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 379
H T G +G L +P ++ AV A R A GD ++LSP C
Sbjct: 284 RFGHIASAYTIGAAGPRFAAILAGK---VPVEQCGDLATAVAAAYRSAAPGDTVLLSPAC 340
Query: 380 ASFDEFRNFEHRGMVFQEL 398
ASFD+FR+FE RG F+ L
Sbjct: 341 ASFDQFRDFEDRGNQFRTL 359
>gi|153952827|ref|YP_001393592.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
kluyveri DSM 555]
gi|219853492|ref|YP_002470614.1| hypothetical protein CKR_0149 [Clostridium kluyveri NBRC 12016]
gi|189082874|sp|A5N4L3.1|MURD_CLOK5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|254766045|sp|B9DY75.1|MURD_CLOK1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|146345708|gb|EDK32244.1| MurD [Clostridium kluyveri DSM 555]
gi|219567216|dbj|BAH05200.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 458
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 115/388 (29%), Positives = 191/388 (49%), Gaps = 44/388 (11%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G + SE++ + P KI VTG++GK+T T + +L G ++++GGN+G PL
Sbjct: 99 EKGAYITSEMEEFIRYCP--AKIYGVTGSDGKTTTTTLMYNILKKQGYKSWIGGNIGTPL 156
Query: 83 -SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE + P +V V+E+SS+Q+ N P V+V+ N++P+HL+ HK M+
Sbjct: 157 FSE-------VEEITPDDRV-VIELSSFQLMTMN--ISPEVAVITNVSPNHLDIHKDMEE 206
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y + K ++F + N+ L +L N+ L ++ G L + F + + + +
Sbjct: 207 YIMAKKNIFKYQSNSDLLVLNKDNE-LTNSMTGEA--LGKVRQFSIKEKLNKGGYLNKDS 263
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+ +L +K+ G HN N +AA L D V++E++ HR +
Sbjct: 264 LCIDGDEVCKLSEIKLKGMHNVENL-LAAFCALKDD--VNIESMREIATTFSGVEHRCEF 320
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI--- 318
V R+I GV + +DS A++ T GL K VIL+ G G++K I
Sbjct: 321 V-REINGVKYYNDSIASSPTRTLAGLKAF--EKPVILIAG-----------GYDKKIPFD 366
Query: 319 ----EPLNHHRCVITFGYSGVLIWKTLVNNGLS----IPCFAVANMKDAVNHARRMATNG 370
E + + ++ G + I + N L IP ++ +AVN AR+++ G
Sbjct: 367 ILAEEGYSKIKTLVLMGATKYKIKEAFENLELKKHVHIPIIMANSLVEAVNSARKVSCRG 426
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVFQEL 398
D + LSP CASFD F NFE RG +F+E+
Sbjct: 427 DVVTLSPACASFDMFANFEIRGNMFKEI 454
>gi|387879102|ref|YP_006309405.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
parasanguinis FW213]
gi|419800618|ref|ZP_14325891.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
parasanguinis F0449]
gi|385694552|gb|EIG25147.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
parasanguinis F0449]
gi|386792557|gb|AFJ25592.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
parasanguinis FW213]
Length = 449
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 109/378 (28%), Positives = 188/378 (49%), Gaps = 33/378 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LEKGIPVLTEVELAYLI--SDAPIIGITGSNGKTTTTTMIGEVLTAAGQGGLLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + + +V V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASQVA-------QTATEKEVLVMELSSFQL-MGIEAFHPEIAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K +L +M + +L F NQ L + + K + I G + E
Sbjct: 203 YVAAKWNLQKNMTEKDVIVLNF-NQDLAKELATKTKARVLPFSTIEKVDGAYL--EDGLL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F+ V ++ + V G HN N A+A ++V + GV+ E + T+ H
Sbjct: 260 KFKGEVV-----MRADELGVPGSHNVEN-ALATIAVAKVR-GVENEVIKETLSAFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R+Q V +IQGV + +DSK+TN+ AT L K +++ GG + N F++L
Sbjct: 313 RLQYVD-EIQGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDEL 365
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
+ + + ++ G S + + G +P A++ DA A +A+ GD ++LSP
Sbjct: 366 VPHITGLKEMVILGESAPRVKRAADKAG--VPYVDAADVADATKKAFDLASPGDVVLLSP 423
Query: 378 GCASFDEFRNFEHRGMVF 395
AS+D + NFE RG F
Sbjct: 424 ANASWDMYPNFEVRGDEF 441
>gi|167040634|ref|YP_001663619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Thermoanaerobacter sp. X514]
gi|300914675|ref|ZP_07131991.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
sp. X561]
gi|307724091|ref|YP_003903842.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
sp. X513]
gi|226722952|sp|B0K3H2.1|MURD_THEPX RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|166854874|gb|ABY93283.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermoanaerobacter
sp. X514]
gi|300889610|gb|EFK84756.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
sp. X561]
gi|307581152|gb|ADN54551.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
sp. X513]
Length = 454
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 120/385 (31%), Positives = 196/385 (50%), Gaps = 45/385 (11%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
++ E++FA + I A+TGTNGK+T + +G+M + G + +V GN+G PL A
Sbjct: 94 ELLGEVEFAYRF--SKAPIYAITGTNGKTTTTSLLGEMFKNTGRKVYVAGNIGYPLIYAV 151
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ +++ F VA E+SS+Q+E K F P +S ++N+TPDHL+RHKT +NY K
Sbjct: 152 -----MEAAEDDFIVA--EISSFQLETI-KEFKPKISCIINITPDHLDRHKTFENYRDIK 203
Query: 147 CHLFSHMVNTKLGLLPFG--------NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+F + + +L + N+ R +L GA+ K S
Sbjct: 204 GRIFENQREDEYTVLNYDDPVTWSLKNKAKCRVFPFSRKSLLENGAY--------IKDGS 255
Query: 199 FEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+ G ++ + + + G HN NA +AA SV L G+ + + +T++ + H
Sbjct: 256 IYISVNGNAEKIIDIEEIYIPGEHNLENA-LAASSVAYLS-GISADVIANTLKTFKGVEH 313
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R++ V +I GV + +DSK TN +A+ + LK V++ GG K G E F++
Sbjct: 314 RIEFVD-EINGVKFYNDSKGTNPDASIKAIQALK-TPIVLIAGGYDK---GSE---FDEF 365
Query: 318 IEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIP----CFAVANMKDAVNHARRMATNGDA 372
++ N + +I G + I T S P FA +++AV A A GD+
Sbjct: 366 VKAFNGKVKKLILIGQTAKKIRDTA--RKYSYPEDDILFA-GTLEEAVKKAYESAKEGDS 422
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQE 397
++LSP CAS+D FRNFE RG +F++
Sbjct: 423 VLLSPACASWDMFRNFEERGRIFKK 447
>gi|398978390|ref|ZP_10687765.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM25]
gi|398137190|gb|EJM26256.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM25]
Length = 448
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 117/362 (32%), Positives = 176/362 (48%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGAKQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L AF G++ + K +FE + + + +K+
Sbjct: 221 T---RPLMGEGQPCWTFGLTKPDFKAF-GLREENGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ + + HR Q V RD+ GV + +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLAALRTFAGLEHRCQWV-RDLDGVGYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D+ G K V++ GG K G E F+ L +P+ H R VI G
Sbjct: 329 NVGAALAAIEGLGADIDG-KVVLIAGGDGK---GAE---FKDLRDPVAAHCRAVILMGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
I + + G ++P + DAV R A GD ++LSP CASFD F+N+E RG
Sbjct: 382 SDKIGEAI---GDAVPLIRATTLVDAVVQCRAAAQPGDVVLLSPACASFDMFKNYEDRGH 438
Query: 394 VF 395
F
Sbjct: 439 QF 440
>gi|372269624|ref|ZP_09505672.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Marinobacterium stanieri S30]
Length = 449
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 115/364 (31%), Positives = 171/364 (46%), Gaps = 46/364 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+N KSTV T VGQM G+ VGGN+G P+ L + + V+
Sbjct: 111 IVAITGSNAKSTVTTLVGQMAEQAGLAVGVGGNIGTPM---------LDLLEQACDLYVL 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E N+ V+ VLN++PDHL+R+ M++Y LTK ++ +L
Sbjct: 162 ELSSFQLETANE-LKAAVATVLNISPDHLDRYNGMQDYVLTKQRIYRGAAK----VLANR 216
Query: 165 NQHLNEAIKGHRFNLAWIG-AFPGVK----IDTEAKTASFEVPAVGVVSQLQLHNMKVMG 219
+ L + + L G P +K + E +T + G+ L + MK+ G
Sbjct: 217 DDQLTQPLMAQGVELKRFGLGAPDLKDYGLCEHEGETWLCQ----GLTPLLPVSAMKIRG 272
Query: 220 RHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV--HRDIQGVTWVDDSKA 277
+HNY NA A +DI E S + HR Q V HR GV + +DSK
Sbjct: 273 QHNYANALAALALADAVDI--PREPALSALREFAGLEHRCQWVAEHR---GVGYFNDSKG 327
Query: 278 TNLEATCTGLMDL-----KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFG 331
TN+ AT L L +G++ ++L GG K F L PL + R ++ FG
Sbjct: 328 TNVGATLAALEGLGATLGEGNRLILLAGGVGK------DQAFGDLSAPLQRYGRALVLFG 381
Query: 332 YSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 391
I + I +++ AV A ++A GD ++LSP CASFD F + R
Sbjct: 382 RDAQQIAAEVSG----IETHFADSLETAVKAAAQLAQPGDLVLLSPACASFDMFSGYPER 437
Query: 392 GMVF 395
G F
Sbjct: 438 GRAF 441
>gi|425901420|ref|ZP_18878011.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
gi|397883129|gb|EJK99615.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
Length = 448
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 116/364 (31%), Positives = 179/364 (49%), Gaps = 47/364 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y HL H + + F
Sbjct: 162 ELSSFQLETTDQ-LGAEVATVLNISEDHMDRYSGLPAY-----HLAKHRIFRGARQVVFN 215
Query: 165 NQH------LNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
Q + E + F L+ AF G++ + K +FE + + + +K
Sbjct: 216 RQDALTRPLIGEGLPCWTFGLSKPDFKAF-GLREENGEKYLAFEFQNL-----MPVRELK 269
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
+ G HN NA A G +G+ +A+ S + HR Q V RD+ GV + +DSK
Sbjct: 270 IRGAHNQSNALAALAL--GHAVGLPFDAMLSALRTFAGLEHRCQWV-RDLDGVGYYNDSK 326
Query: 277 ATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFG 331
ATN+ A + D++G K V++ GG K G E F+ L +P+ + R VI G
Sbjct: 327 ATNVGAALAAIEGLGADIEG-KIVLIAGGDGK---GAE---FKDLRDPVAANCRAVILMG 379
Query: 332 YSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 391
I + + G ++ V ++ DAV R A +GD ++LSP CASFD F+N+E R
Sbjct: 380 RDSDKIGEAI---GDAVQLIRVGSLVDAVAQCRAAAQSGDVVLLSPACASFDMFKNYEDR 436
Query: 392 GMVF 395
G F
Sbjct: 437 GHQF 440
>gi|320157425|ref|YP_004189804.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio vulnificus
MO6-24/O]
gi|319932737|gb|ADV87601.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio vulnificus
MO6-24/O]
Length = 442
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 177/380 (46%), Gaps = 76/380 (20%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G M N G++ +GGN+G P AL + + ++ V+
Sbjct: 110 VIAITGSNGKSTVTDLTGVMANACGVKCAIGGNIGVP---------ALDLLEQEVELYVL 160
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTK--- 157
E+SS+Q+E + + LNL+ DH++R++ M +Y K +F H +VN
Sbjct: 161 ELSSFQLETTSSLHL-VAAAFLNLSEDHMDRYQGMDDYRQAKLRIFQHAKHGVVNRDDRQ 219
Query: 158 -----------LGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
L L+ FG+ + H+ +W+ + + AS E
Sbjct: 220 TYPETSHGQQLLALVTFGSDDKEFGVMSHQGE-SWL------SYNQQPILASRE------ 266
Query: 207 VSQLQLHNMKVMGRHNYHNAAV--AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+K++G+HN N V A L+ G+D + AL S + HR Q+V
Sbjct: 267 --------LKLVGQHNVANVLVVLALLTCAGIDYRKGLSALKSYTGL----THRCQVV-A 313
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
D +G+ WV+DSKATNL +T L L K +L+GG K G + + + ++ LN
Sbjct: 314 DNRGIKWVNDSKATNLASTQAALSGLNCAGKLYLLVGGDGK---GADFSPLKPILAQLNL 370
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVAN----MKDAVNHARRMATNGDAIVLSPGC 379
C FG G +P A A M+D + H +GD ++LSP C
Sbjct: 371 QLCC--FGADGDQF----------MPLHASATRFERMEDVIEHISPQLQSGDMVMLSPAC 418
Query: 380 ASFDEFRNFEHRGMVFQELA 399
ASFD+F NF RG F ELA
Sbjct: 419 ASFDQFSNFMARGDRFAELA 438
>gi|224368382|ref|YP_002602545.1| protein MurD [Desulfobacterium autotrophicum HRM2]
gi|223691098|gb|ACN14381.1| MurD [Desulfobacterium autotrophicum HRM2]
Length = 458
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 179/376 (47%), Gaps = 37/376 (9%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V ELD + R ++A+TGTNGK+TV T V +ML G+ F GGN+G PL E
Sbjct: 104 VTGELDLFFYFLER--PLVAITGTNGKTTVTTLVSEMLKRSGLSVFTGGNIGTPLVE--- 158
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
S V V EVSS+Q++ F P V+V+LN+ DH++R+ YA +K
Sbjct: 159 ----FLESGQTEDVVVAEVSSFQLDAAT-MFAPRVAVLLNIAEDHMDRYTAFSAYADSKW 213
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
L + + ++ NQ L R A + F + +A A+ + ++ +
Sbjct: 214 ALLGNQSENDIAVV---NQTLPIDSDRKRTIKAVLLTFG----EDKACNAAIDTRSIAIS 266
Query: 208 SQ-----LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
+Q L L ++ G HN N +AA ++ L G + ++ HR + V
Sbjct: 267 TQDQKFVLDLSVTRLRGAHNREN--IAAAALAALLAGACQAGIQGALDDFSGLAHRTEYV 324
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322
I GV + +DSK TN A L + +++LGG++K F L+ +N
Sbjct: 325 TA-INGVDYYNDSKGTNPHAVEGALRGF--DRVILILGGRSK------GTDFSCLVPLIN 375
Query: 323 HH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ VI G + I L G ++ +M D V+ A R+AT+GD ++LSPGC+S
Sbjct: 376 QRVKTVILMGEAAREIKAVL---GSTVEILEAGSMADVVSVANRIATHGDTVLLSPGCSS 432
Query: 382 FDEFRNFEHRGMVFQE 397
FD + N+ RG F++
Sbjct: 433 FDMYDNYAQRGRDFKD 448
>gi|225619140|ref|YP_002720366.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
hyodysenteriae WA1]
gi|225213959|gb|ACN82693.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
hyodysenteriae WA1]
Length = 471
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 107/383 (27%), Positives = 189/383 (49%), Gaps = 39/383 (10%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
+++ E++FA +P +AVTGT+GK+T VT V ++ +A + GN+GN S+
Sbjct: 111 KIIGEIEFAYNFLPNR-NYIAVTGTDGKTTTVTLVHDIIKSYK-KARLLGNVGNTFSKEI 168
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ + + ++E+SS+Q+E K F ++ VLN+ DHL+R+K +++Y TK
Sbjct: 169 -------ETIEEDEDVILELSSFQLETVEK-FHAHIAAVLNIAEDHLDRYKDIEDYFNTK 220
Query: 147 CHLFSHMVNTKLGLLPFGN-------QHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
++ + +L + N LN K + F + + E + +
Sbjct: 221 KNITINQNKNDFLILNYDNIYTNIWYNELNGNCKMKLLTFSLKSKFATIYYNEEDEYIYY 280
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
E + + N KV+G+HN N A L L DI V E + + + HR+
Sbjct: 281 ENEKL-----FSIANRKVIGKHNIANILAAVLICLKDDIPV--EYIEKAVNNFKGIEHRV 333
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319
++V I GV +V+DSKAT++ + + L ++++GG+ K ++ F L
Sbjct: 334 ELVAT-INGVKYVNDSKATSMNSVMSALKSF-DKDIILIMGGRNKNID------FTHLNN 385
Query: 320 PLNHH-RCVITFGYSGVLIWKTL-VNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
+N + +I G + + + L N + V ++ DA N+A ++ NGD ++LSP
Sbjct: 386 IINARVKKLILIGEAAEALSEMLHFENKI-----IVRDLTDAFNYASAISINGDTVLLSP 440
Query: 378 GCASFDEFRNFEHRGMVFQELAF 400
GC SFD F+N+E RG F+ L +
Sbjct: 441 GCTSFDMFKNYEERGKYFKSLVY 463
>gi|419801738|ref|ZP_14326952.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Haemophilus
parainfluenzae HK262]
gi|419845825|ref|ZP_14369088.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Haemophilus
parainfluenzae HK2019]
gi|385193117|gb|EIF40498.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Haemophilus
parainfluenzae HK262]
gi|386414863|gb|EIJ29405.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Haemophilus
parainfluenzae HK2019]
Length = 437
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 120/410 (29%), Positives = 194/410 (47%), Gaps = 53/410 (12%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA L +G V+ +++ + + I + +TG+NGKSTV
Sbjct: 63 WLLESDIIVISPGLAVKTPEIQTALSAGVEVIGDIELFCRAATKPI--VGITGSNGKSTV 120
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M GI+ +GGN+G P AL + V+E+SS+Q+E
Sbjct: 121 TTLVYEMAKSAGIKVGMGGNIGIP---------ALSLLNEDCDLYVLELSSFQLETTYS- 170
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL---LPFGNQHLNEAIKG 174
+ VLN+T DH++R+ +++Y K ++ + L L FG N+A K
Sbjct: 171 LKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIYHKAETAVVNLEDKLTFGEGE-NQAKK- 228
Query: 175 HRFNLAWIGAFPGVKIDTEAKTAS---FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
+ +F + D KT + + + V+ L ++GRHNY N + A
Sbjct: 229 -------VVSFAENQADYWLKTENGKQYLMAKEEVI--LPCDEATLVGRHNYMN--ILAA 277
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L +G+++EA+ +T+ + HR Q+ ++ GV W++DSKATN+ +T L L
Sbjct: 278 TALAQAVGINLEAIRTTLRQFKGLDHRFQLAYQ-ANGVRWINDSKATNVGSTVAALAGLY 336
Query: 292 GHKCV-ILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFGYSGVLIWKTLVNNGLSIP 349
+ +LLGG K + F +L + +N H FG G K L LS
Sbjct: 337 VEGTLHLLLGGDGKGAD------FSELADLINQPHISTYCFGRDG----KQLA--ALSSQ 384
Query: 350 CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
M+ A++ R +GD ++LSP CAS D+F +FE RG F LA
Sbjct: 385 SHLFETMEQAISFLRPRLKSGDMVLLSPACASLDQFSSFEKRGEEFTRLA 434
>gi|410478394|ref|YP_006766031.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospirillum
ferriphilum ML-04]
gi|406773646|gb|AFS53071.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Leptospirillum
ferriphilum ML-04]
Length = 391
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 120/397 (30%), Positives = 196/397 (49%), Gaps = 45/397 (11%)
Query: 26 KRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85
+ VM E+++A+ ++ ++AV GTNGKST + L G F+GGN G PLS+
Sbjct: 4 RNVMGEMEWASSWT--AVPLVAVGGTNGKSTTSALLAHFLEAAGERVFLGGNFGTPLSDM 61
Query: 86 AFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALT 145
S P VAVVE+SS+Q E F P V+++LN+TPDHL+R+ ++ +Y
Sbjct: 62 VLS--ERRGSSPLPTVAVVELSSFQAETMG-IFRPVVNLLLNITPDHLDRYLSVDHYRNA 118
Query: 146 KCHLFSHMVNTKLGLL---PFGNQHLNEAIKGHRFNLAWI----GAFP----GVKIDTEA 194
K + F M +L P + + R LAW G+ P G+ ++ +A
Sbjct: 119 KWNAFQTMEKESFTVLNRDPACGVYPPFSPISSR--LAWFYGSKGSCPDRTGGLILEGDA 176
Query: 195 KTASFE----VPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL-SVLGLD-IGVDVEALNST 248
+A+ + +P + L + G N N A + L +VL L G E + +
Sbjct: 177 LSATLDGIEGLPPI----SWNLEKFPLEGMGNRQNLAASLLGAVLYLKATGKHPEQVTTV 232
Query: 249 IE----ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI--LLGGQ 302
+E R PHRM++V + +G+ +++DSKATN++AT L GH + +LGG+
Sbjct: 233 LEEAAASFRGLPHRMEVVG-EWKGIRFINDSKATNVDATRLALEGYAGHSPFVHLILGGR 291
Query: 303 AKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVN 361
K + L E + + + G + I + L G +P ++++AV+
Sbjct: 292 DK------GAPYAPLREGIRTSVKSIAVLGEARDKIREEL---GSLVPLRMCESLEEAVD 342
Query: 362 HARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
A A+ GD ++LSP C+S+D F +E RG VF+ +
Sbjct: 343 VAAGQASEGDRVLLSPACSSYDMFHGYEERGAVFRSI 379
>gi|398852596|ref|ZP_10609248.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM80]
gi|398243685|gb|EJN29267.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM80]
Length = 448
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 116/362 (32%), Positives = 176/362 (48%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L+ AF G++ + K +FE + + + +K+
Sbjct: 221 T---RPLMGEGQPCWTFGLSKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S + HR Q V RD+ GV + +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSALRTFAGLEHRCQWV-RDLDGVAYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D+ G K +++ GG K G E F L +P+ + R VI G
Sbjct: 329 NVGAALAAIEGLGADIDG-KVILIAGGDGK---GAE---FNDLRDPVAANCRAVILMGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
I + G ++P ++ DAV R A GD ++LSP CASFD F+N+E RG
Sbjct: 382 SDKIGAAI---GDAVPLIRATSLVDAVAQCRAAAQPGDVVLLSPACASFDMFKNYEDRGH 438
Query: 394 VF 395
F
Sbjct: 439 QF 440
>gi|325954319|ref|YP_004237979.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Weeksella virosa
DSM 16922]
gi|323436937|gb|ADX67401.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Weeksella virosa
DSM 16922]
Length = 443
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/374 (26%), Positives = 191/374 (51%), Gaps = 26/374 (6%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
V+SE++FA++ KI+A+TG+NGK+T + + ++ G++ + GN+G ++
Sbjct: 88 EVISEIEFASRFTES--KIIAITGSNGKTTTTSLMYHIMKEAGLDVGLCGNIGKSFAQ-- 143
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALT 145
L + P + V+E+SS+Q++ ++F P ++++LN+TPDHL+R++ YA +
Sbjct: 144 -----LVAEDP-HEYYVIEISSFQLD-DIRFFKPYIAIILNITPDHLDRYENNFDKYAHS 196
Query: 146 KCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG-AFPGVKIDTEAKTASFEVPAV 204
K + + + + + ++ +NE IK + + K A FE+
Sbjct: 197 KFRITENQTDKEYFVYNVDDEKINELIKELKIKANKTSFSMKDKKQKAYANEKIFEIKDN 256
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+ + ++ ++G+HN N+ AA + L I DV + ++ ++ HR++ V +
Sbjct: 257 DNSFLMPIADLGLIGKHNVSNSLAAATAANILKIRKDV--IKRSLSDFKSVEHRLENVLK 314
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH 324
I G+ +++DSKATN+ AT L +K + + ++GG K N + +L+ +
Sbjct: 315 -IGGIEFINDSKATNVNATYFALESMK-NPVIWIVGGTDK------GNDYSELMPFVKKK 366
Query: 325 -RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 383
+ ++ G I + +G+ MKDAV A GD ++LSP CASFD
Sbjct: 367 VKAIVCLGVDNHKIIEAF--SGVVEKITETKTMKDAVRAAYMYGEKGDTVLLSPACASFD 424
Query: 384 EFRNFEHRGMVFQE 397
F +++ RG F++
Sbjct: 425 LFTSYQDRGNQFKK 438
>gi|37678796|ref|NP_933405.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
vulnificus YJ016]
gi|60390522|sp|Q7MNV3.1|MURD_VIBVY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|37197537|dbj|BAC93376.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio vulnificus
YJ016]
Length = 442
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 176/380 (46%), Gaps = 76/380 (20%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G M N G++ +GGN+G P AL + + ++ V+
Sbjct: 110 VIAITGSNGKSTVTDLTGVMANACGVKCAIGGNIGVP---------ALDLLEQEVELYVL 160
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVN----- 155
E+SS+Q+E + LNL+ DH++R++ M +Y K +F H +VN
Sbjct: 161 ELSSFQLETTTSLHL-VAAAFLNLSEDHMDRYQGMDDYRQAKLRIFQHAKHGVVNRDDRQ 219
Query: 156 ---------TKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
L L+ FG+ + H+ +W+ + + AS E
Sbjct: 220 TYPETSHGQQSLALVTFGSDDKEFGVMSHQGE-SWL------SYNQQPILASRE------ 266
Query: 207 VSQLQLHNMKVMGRHNYHNAAV--AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+K++G+HN N V A L+ G+D + AL S + HR Q+V
Sbjct: 267 --------LKLVGQHNVANVLVVLALLTCAGIDYRKGLSALKSYTGL----THRCQVV-A 313
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
D +G+ WV+DSKATNL +T L L K +L+GG K G + + + ++ LN
Sbjct: 314 DNRGIKWVNDSKATNLASTQAALSGLNCAGKLYLLVGGDGK---GADFSPLKPILAQLNL 370
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVAN----MKDAVNHARRMATNGDAIVLSPGC 379
C FG G +P A A M+D + H +GD ++LSP C
Sbjct: 371 QLCC--FGADGDQF----------MPLHASATRFERMEDVIEHISPQLQSGDMVMLSPAC 418
Query: 380 ASFDEFRNFEHRGMVFQELA 399
ASFD+F NF RG F ELA
Sbjct: 419 ASFDQFSNFMARGDRFAELA 438
>gi|152979588|ref|YP_001345217.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Actinobacillus succinogenes 130Z]
gi|150841311|gb|ABR75282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
succinogenes 130Z]
Length = 437
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 117/395 (29%), Positives = 188/395 (47%), Gaps = 44/395 (11%)
Query: 13 LKATGLACLLQSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE 71
+K + L +G V+ +++ F + ++ ++A+TG+NGKSTV T V +M G+
Sbjct: 77 VKTPEIQTALSAGIEVVGDIELFCREANIQAKPVVAITGSNGKSTVTTLVAEMAKADGLR 136
Query: 72 AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPD 131
A +GGN+G P AL ++ + V+E+SS+Q+E + VLN+T D
Sbjct: 137 AGMGGNIGIP---------ALSLLDAEYDLYVLELSSFQLETTFG-LRARAATVLNVTED 186
Query: 132 HLERHKTMKNYALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIK-GHRFNLAWIGAFP 186
H+ R+ +++Y K ++++ ++N + L Q G W+
Sbjct: 187 HMNRYADLEDYRQAKLKIYANAETAVINAEDSLTQDNKQRAKRQFSFGESHADYWLKTEN 246
Query: 187 GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
G + + + VV L +K+ GRHNY N A+A+++ L +GV +
Sbjct: 247 GKQ---------YLMAGREVV--LPCDEVKISGRHNYMN-ALASIA-LAQAVGVKTHGIR 293
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKV 305
+ + HR Q+ H GV W++DSKATN+ +T L L + +LLGG K
Sbjct: 294 TALRTFTGLDHRFQLAHL-ANGVRWINDSKATNVGSTVAALTGLYLEGNLHLLLGGDGK- 351
Query: 306 LNGQESNGFEKLI-EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR 364
G + + EKL+ +P C FG G + K LS M+ AVN R
Sbjct: 352 --GADFSELEKLVNKPEIFCYC---FGQDGAALAK------LSARSQLFETMEQAVNALR 400
Query: 365 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
+GD ++LSP CAS D+F +FE RG F LA
Sbjct: 401 PALKSGDMVLLSPACASLDQFASFEKRGDEFTRLA 435
>gi|398983529|ref|ZP_10690074.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM24]
gi|399015251|ref|ZP_10717527.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM16]
gi|398109262|gb|EJL99201.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM16]
gi|398157108|gb|EJM45512.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM24]
Length = 448
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 116/362 (32%), Positives = 176/362 (48%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGAKQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L+ AF G++ + K +FE + + + +K+
Sbjct: 221 T---RPLMGEGQPCWTFGLSKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S + HR Q V RD+ GV + +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSALRTFAGLEHRCQWV-RDLDGVAYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D+ G K +++ GG K G E F L +P+ + R VI G
Sbjct: 329 NVGAALAAIEGLGTDING-KVILIAGGDGK---GAE---FNDLRDPVAANCRAVILMGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
I + G ++P ++ DAV R A GD ++LSP CASFD F+N+E RG
Sbjct: 382 SDKIGAAI---GDAVPLIRATSLVDAVAQCRAAARPGDVVLLSPACASFDMFKNYEDRGH 438
Query: 394 VF 395
F
Sbjct: 439 QF 440
>gi|154498031|ref|ZP_02036409.1| hypothetical protein BACCAP_02011 [Bacteroides capillosus ATCC
29799]
gi|150273021|gb|EDN00178.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Pseudoflavonifractor capillosus ATCC 29799]
Length = 461
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 115/389 (29%), Positives = 186/389 (47%), Gaps = 28/389 (7%)
Query: 16 TGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVG 75
T L + G + SE++ QV P +I+AVTG++GK+T T + ++L G +VG
Sbjct: 91 TPLLAARERGSVITSEMEVFFQVCP--CEIIAVTGSDGKTTTTTIISELLKKAGYNVYVG 148
Query: 76 GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLER 135
GN+G PL P+ +P V V+E+SS+Q+ + P ++VV N+ P+HL+
Sbjct: 149 GNIGKPL------LAETPNMEPDDMV-VLELSSFQLMTMD--MSPDIAVVTNVAPNHLDV 199
Query: 136 HKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAK 195
HK+M+ Y K ++F+H L + + N+ + K N+ ++ K
Sbjct: 200 HKSMEEYVEAKENIFAHQSTENLAVFNWDNEITRDFSKKAPGNVMCFSRREMLERGIYVK 259
Query: 196 T-ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
A + G L L ++ + G HN N A +V GL V E +
Sbjct: 260 DDAIWCADRDGHRKVLLLSDILLPGNHNVENYMAAIAAVNGL---VSDETIRLFARSFGG 316
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGF 314
HR+++V R + GV + +DS A++ T GL + K +++ GG K + F
Sbjct: 317 VEHRIELV-RTVDGVRYYNDSIASSPTRTIAGLRSFE-EKVILIAGGYDKHI------PF 368
Query: 315 EKL-IEPLNHHRCVITFGYSGVLIWKTLVN----NGLSIPCFAVANMKDAVNHARRMATN 369
+ L E + H + +I G + I + N NG + P + + AV A MA
Sbjct: 369 DVLGPEIIEHVKELILTGDTAEKIRAAVENAPGYNGSNPPIRMYQDFEQAVLAAHSMAQP 428
Query: 370 GDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
GD ++LSP CASFD F+NF RG F+ +
Sbjct: 429 GDVVILSPACASFDRFKNFMERGNAFKRI 457
>gi|399154390|ref|ZP_10754457.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
proteobacterium SCGC AAA007-O20]
Length = 438
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 117/362 (32%), Positives = 183/362 (50%), Gaps = 47/362 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+ +TG+NGKSTV +G+M G A + GN+G P+ E S + ++ VV
Sbjct: 103 IVGITGSNGKSTVTQLLGEMAIGSGKNAVICGNIGKPVME---------SLSDEAELYVV 153
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SSYQ++ N T VV N++PDHL+R+ Y +K L+ + + + L
Sbjct: 154 EMSSYQLDYTNNLNLLT-GVVTNISPDHLDRYPNYDIYIASKLKLYEYCQYSVVNL---- 208
Query: 165 NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ--------LQLHNMK 216
N+ L + IKG + I+ ++ F VG + + ++
Sbjct: 209 NEPLVKGIKGDSY----------YAIEEATQSCEFSAKKVGGIYTIYQGKNILMTSDDLI 258
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
V+G+HN N +AALS LG G+ V+ + + PHR++ V ++ GV + ++SK
Sbjct: 259 VVGQHNVEN-VLAALS-LGQQAGLSVQEMIQVAKSFTGLPHRLEWV-ANLSGVDYFNNSK 315
Query: 277 ATNLEATCTGLMDLKG-HKCVILL-GGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSG 334
+TN +T T + L +K ++L+ GG AK S F+ + E +N VI G S
Sbjct: 316 STNAISTITAIEALSDRYKSIVLIAGGIAK--KEDYSKLFQLISEKIN---AVILIGESA 370
Query: 335 VLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMV 394
L + + NG P V +MK AV ++ +A G AI+LSPGCASFD F +F RG V
Sbjct: 371 TLFSQQI--NGC--PVSIVESMKQAVISSKAIAKEG-AILLSPGCASFDMFVDFNERGEV 425
Query: 395 FQ 396
F+
Sbjct: 426 FK 427
>gi|227538299|ref|ZP_03968348.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Sphingobacterium spiritivorum ATCC 33300]
gi|227241814|gb|EEI91829.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Sphingobacterium spiritivorum ATCC 33300]
Length = 457
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 118/394 (29%), Positives = 189/394 (47%), Gaps = 45/394 (11%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ L Q G V+ E++FAAQ ++ +TG+NGKST +L G+ + GN
Sbjct: 90 VVALKQKGIPVIGEIEFAAQYT--DARLYCITGSNGKSTTTMLTYYILQKAGVNVGLAGN 147
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERH 136
+G AL ++ +F V V+E+SS+ ++ + Y F V+V+LN+TPDHL+R+
Sbjct: 148 IG--------RSFALQVAQEQFDVYVLEISSFMLD--DMYQFRADVAVILNITPDHLDRY 197
Query: 137 K-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG----HRFNLAWIGAF-----P 186
M+NY +K + + + ++ E +KG H W P
Sbjct: 198 DHKMENYVDSKFRMIRNQTANDYFIYCLDDE---ETVKGLERHHTEATIWPMTQEQVINP 254
Query: 187 GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL--SVLGLDIGVDVEA 244
G +D E K P G + ++ + G+HN +N A L V L E+
Sbjct: 255 GAYLDQE-KNIIINTPK-GEQFIMNTEDLSLQGKHNVYNNMAAGLVAKVQELRNRSMQES 312
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
++S + I PHR++ V I GV +++DSKATN+ + L + V+++GG K
Sbjct: 313 MSSYVNI----PHRLEHVAC-IGGVNYINDSKATNVNSVWYALESF-SPQIVLIMGGVDK 366
Query: 305 VLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHA 363
N +E L + + R +I G I ++ + I ++MKDAV A
Sbjct: 367 ------GNDYEMLRDLVRSKVRAIICIGKDNTRIHESFEEDTDVI--VNSSSMKDAVEIA 418
Query: 364 RRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
+A GD ++LSP CASFD F+N+E RG F+E
Sbjct: 419 SHIAQKGDTVLLSPACASFDWFKNYEERGDKFKE 452
>gi|223041554|ref|ZP_03611755.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Actinobacillus minor 202]
gi|223017649|gb|EEF16059.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Actinobacillus minor 202]
Length = 434
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 188/408 (46%), Gaps = 54/408 (13%)
Query: 5 WLFLLEFQLKATGLACL-------LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA +Q+G V+ +++ + I+A+TG NGKSTV
Sbjct: 63 WLLSSDLIVISPGLALATPEIQQAIQAGVEVVGDIELFCR--EAKAPIIAITGANGKSTV 120
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T +M GI+ +GGN+G P AL K +++ V+E+SS+Q+E
Sbjct: 121 TTLTTEMAKQAGIKVGMGGNIGVP---------ALSLLKGDYELYVLELSSFQLETTYS- 170
Query: 118 FCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLG---LLPFGNQHLNEAIK 173
+ +LN++ DH++R+ +++ Y K ++ + N + L + Q + + I+
Sbjct: 171 LKAKAATILNISEDHMDRYNNSVEEYRAAKLRIYQNAENIIVNGEDPLTYPTQAVEKLIR 230
Query: 174 GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV 233
N + K DT +++ +G+ M + GRHN NA A
Sbjct: 231 FAEQNAEY-----SKKNDT---LYAYDDAVIGI------KQMLIRGRHNEMNALAAMALA 276
Query: 234 LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-G 292
G+ E + ++ PHR Q V + V WV+DSKATN+ +T L L+
Sbjct: 277 E--AAGIPREGIVKALQTYGGLPHRFQAVATN-DCVRWVNDSKATNVGSTVAALNGLEVA 333
Query: 293 HKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCV-ITFGYSGVLIWKTLVNNGLSIPCF 351
+LLGG K + F +LI +N V FG G + K LS
Sbjct: 334 GTLYLLLGGDGKAAD------FSELIPLVNKANIVCYCFGQDGEQLAK------LSTQSV 381
Query: 352 AVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
VA M++AV R GD ++LSP CAS D+F+NFE RG +F LA
Sbjct: 382 LVATMQEAVEQIRPQLKTGDMVLLSPACASLDQFKNFEERGNIFMALA 429
>gi|167037226|ref|YP_001664804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|320115645|ref|YP_004185804.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|226722951|sp|B0K8K5.1|MURD_THEP3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|166856060|gb|ABY94468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319928736|gb|ADV79421.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 454
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 120/385 (31%), Positives = 196/385 (50%), Gaps = 45/385 (11%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
++ E++FA + I A+TGTNGK+T + +G+M + G + +V GN+G PL A
Sbjct: 94 ELLGEVEFAYRF--SKAPIYAITGTNGKTTTTSLLGEMFKNTGRKVYVAGNIGYPLIYAV 151
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ +++ F VA E+SS+Q+E K F P +S ++N+TPDHL+RHKT +NY K
Sbjct: 152 -----MEAAEGDFIVA--EISSFQLETI-KEFKPKISCIINITPDHLDRHKTFENYRDIK 203
Query: 147 CHLFSHMVNTKLGLLPFG--------NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+F + + +L + N+ R +L GA+ K S
Sbjct: 204 GRIFENQREDEYTVLNYDDPVTWSLKNKAKCRVFPFSRKSLLENGAY--------IKDGS 255
Query: 199 FEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+ G ++ + + + G HN NA +AA SV L G+ + + +T++ + H
Sbjct: 256 IYISVNGNAEKIIDIEEIYIPGEHNLENA-LAASSVAYLS-GISADVIANTLKTFKGVEH 313
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R++ V +I GV + +DSK TN +A+ + LK V++ GG K G E F++
Sbjct: 314 RIEFVD-EINGVKFYNDSKGTNPDASIKAIQALK-TPIVLIAGGYDK---GSE---FDEF 365
Query: 318 IEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIP----CFAVANMKDAVNHARRMATNGDA 372
++ N + +I G + I T S P FA +++AV A A GD+
Sbjct: 366 VKAFNGKVKKLILIGQTAKKIRDTA--RKYSYPEDDILFA-GTLEEAVKKAYESAKEGDS 422
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQE 397
++LSP CAS+D FRNFE RG +F++
Sbjct: 423 VLLSPACASWDMFRNFEERGRIFKK 447
>gi|421616043|ref|ZP_16057062.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
stutzeri KOS6]
gi|421618010|ref|ZP_16058991.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
stutzeri KOS6]
gi|409780005|gb|EKN59650.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
stutzeri KOS6]
gi|409782225|gb|EKN61792.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
stutzeri KOS6]
Length = 447
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 115/363 (31%), Positives = 175/363 (48%), Gaps = 45/363 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+N KSTV T VG+M G + VGGNLG P AL ++ V+
Sbjct: 110 IIAITGSNAKSTVTTLVGEMAAAAGRKVAVGGNLGTP---------ALDLLADDIELYVL 160
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E + V+ LN++ DH++R+ + Y K +F +
Sbjct: 161 ELSSFQLET-TEQLNAEVATCLNISEDHMDRYSGLPAYHQAKHRIFRGARQVVVNR---- 215
Query: 165 NQHLNEAIKGHRFNLAWIG----AFPGVKIDTE--AKTASFEVPAVGVVSQLQLHNMKVM 218
+ L+ + G G F G + E K +F+ A+ + + ++K+
Sbjct: 216 DDRLSRPLVGEDVPTWTFGLGKPDFKGFGLFEENGEKYLAFQFDAL-----MPVRDLKMR 270
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQG-VTWVDDSKA 277
G HN NA A LG +G+ E + +T+ PHR Q V ++G V++ DDSKA
Sbjct: 271 GAHNQSNALAA--LALGHAVGLPFEPMLATLRQFAGLPHRCQWVG--LRGEVSYYDDSKA 326
Query: 278 TNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGY 332
TN+ A + D+ G K V++ GG K + F L P+ + R VI G
Sbjct: 327 TNVGAALAAIEGLGADIDG-KLVLIAGGDGKGAD------FSGLRAPVARYCRAVILLGR 379
Query: 333 SGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 392
L+ LV+ + P VA +++AV A + GDA++LSP CAS D FRNFE RG
Sbjct: 380 DAQLLADALVD---AAPLVRVATLEEAVQRASEFSVAGDAVLLSPACASLDMFRNFEERG 436
Query: 393 MVF 395
+F
Sbjct: 437 RLF 439
>gi|398915512|ref|ZP_10657361.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM49]
gi|398176281|gb|EJM64006.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM49]
Length = 448
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 116/362 (32%), Positives = 179/362 (49%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL + ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLRDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGAKQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNL--AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLMGEGQPCWTFGLNKPDFKAF-GLREENGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S++ HR Q V RD+ GV + +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSSLRTFAGLEHRCQWV-RDLDGVGYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D+ G K V++ GG K G E F+ L +P+ + R VI G
Sbjct: 329 NVGAALAAIEGLGADIDG-KVVLIAGGDGK---GAE---FKDLRDPVAANCRAVILMGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
I + + G ++P ++ +AV R A GD ++LSP CASFD F+N+E RG
Sbjct: 382 SDKIGEAI---GDAVPLIRAGSLVEAVEQCRAAAQPGDVVLLSPACASFDMFKNYEDRGH 438
Query: 394 VF 395
F
Sbjct: 439 QF 440
>gi|27364041|ref|NP_759569.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
vulnificus CMCP6]
gi|30316015|sp|Q8DEK8.1|MURD_VIBVU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|27360158|gb|AAO09096.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio vulnificus
CMCP6]
Length = 442
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 177/380 (46%), Gaps = 76/380 (20%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G M N G++ +GGN+G P AL + + ++ V+
Sbjct: 110 VIAITGSNGKSTVTDLTGVMANACGVKCAIGGNIGVP---------ALDLLEQEVELYVL 160
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVN----- 155
E+SS+Q+E + + LNL+ DH++R++ M +Y K +F H +VN
Sbjct: 161 ELSSFQLETTSSLHL-VAAAFLNLSEDHMDRYQGMDDYRQAKLRIFQHAKHGVVNRDDRQ 219
Query: 156 ---------TKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
L L+ FG+ + H+ +W+ + + AS E
Sbjct: 220 TYPETSHGQQSLALVTFGSDDKEFGVISHQGE-SWL------SYNQQPILASRE------ 266
Query: 207 VSQLQLHNMKVMGRHNYHNAAV--AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+K++G+HN N V A L+ G+D + AL S + HR Q+V
Sbjct: 267 --------LKLVGQHNVANVLVVLALLTCAGIDYRKGLSALKSYTGL----THRCQVV-A 313
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
D +G+ WV+DSKATNL +T L L K +L+GG K G + + + ++ LN
Sbjct: 314 DNRGIKWVNDSKATNLASTQAALSGLNCAGKLYLLVGGDGK---GADFSPLKPILAQLNL 370
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVAN----MKDAVNHARRMATNGDAIVLSPGC 379
C FG G +P A A M+D + H +GD ++LSP C
Sbjct: 371 QLCC--FGADGDQF----------MPLHASATRFERMEDVIEHISPQLQSGDMVMLSPAC 418
Query: 380 ASFDEFRNFEHRGMVFQELA 399
ASFD+F NF RG F ELA
Sbjct: 419 ASFDQFSNFMARGDRFAELA 438
>gi|345429823|ref|YP_004822941.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
parainfluenzae T3T1]
gi|301155884|emb|CBW15353.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
parainfluenzae T3T1]
Length = 437
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 120/410 (29%), Positives = 194/410 (47%), Gaps = 53/410 (12%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA L +G V+ +++ + + I + +TG+NGKSTV
Sbjct: 63 WLLESDIIVISPGLAVKTPEIQTALSAGVEVIGDIELFCRAATKPI--IGITGSNGKSTV 120
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M GI+ +GGN+G P AL + V+E+SS+Q+E
Sbjct: 121 TTLVYEMAKAAGIKVGMGGNIGIP---------ALSLLNEDCDLYVLELSSFQLETTYS- 170
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL---LPFGNQHLNEAIKG 174
+ VLN+T DH++R+ +++Y K ++ + + L L FG N+A K
Sbjct: 171 LKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIYHNAETAVVNLEDKLTFGEGE-NQAKK- 228
Query: 175 HRFNLAWIGAFPGVKIDTEAKTAS---FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
+ +F + D KT + + + V+ L ++GRHNY N + A
Sbjct: 229 -------VVSFAENQADYWLKTENGKQYLMAKEEVI--LPCDEATLVGRHNYMN--ILAA 277
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L +G+++EA+ + + + HR Q+ H+ GV W++DSKATN+ +T L L
Sbjct: 278 TALAQAVGINLEAIRTALRQFKGLDHRFQLAHQ-ANGVRWINDSKATNVGSTVAALAGLY 336
Query: 292 GHKCV-ILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFGYSGVLIWKTLVNNGLSIP 349
+ +LLGG K + F +L + +N H FG G K L LS
Sbjct: 337 VEGTLHLLLGGDGKGAD------FSELADLINQPHISTYCFGRDG----KQLA--ALSSQ 384
Query: 350 CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
M+ A++ R +GD ++LSP CAS D+F +FE RG F LA
Sbjct: 385 SHLFETMEQAISFLRPHLKSGDMVLLSPACASLDQFASFEKRGEEFTRLA 434
>gi|110801072|ref|YP_697147.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
perfringens ATCC 13124]
gi|168215153|ref|ZP_02640778.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
perfringens CPE str. F4969]
gi|118595650|sp|Q0TMJ3.1|MURD_CLOP1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|110675719|gb|ABG84706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
perfringens ATCC 13124]
gi|170713450|gb|EDT25632.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
perfringens CPE str. F4969]
Length = 458
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 111/371 (29%), Positives = 181/371 (48%), Gaps = 50/371 (13%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K+ VTG++GK+T T V ++L+ G + + GGN+G PL F I + K V
Sbjct: 118 KVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPL----FSNIEEIKEEDK---VV 170
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+ + V++V N+TP+HL+ HK M+ Y K ++F + L ++
Sbjct: 171 LELSSFQLMTMDVEI--DVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLVIND 228
Query: 164 GNQ---HLNEAIKGH--RFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
N+ +L++ KG RF+ D + EV + ++ +
Sbjct: 229 ENEITKNLDKEAKGKVVRFSSKKTAGEDAYYKDGKLYVHGKEV--------CKKDDIIIK 280
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN N A L+V V +E++ E HR + + R++ GV + +DS A+
Sbjct: 281 GMHNVENYLAAFLAVYD---EVSIESMKKVAETFGGVHHRCEFI-REVDGVKYYNDSIAS 336
Query: 279 NLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI--EPLNHH-----RCVITFG 331
T GL K VILL G G++K + EPL + + ++ FG
Sbjct: 337 TPTRTLAGLKAF--EKPVILLAG-----------GYDKHVPFEPLAYEGYEKIKAIVLFG 383
Query: 332 YSGVLI---WKTLVNN-GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ I +K L G+ +P ++ ++++ VN A+ +A NGD I LSP CASFD F+N
Sbjct: 384 VTKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVNIAKSIAENGDIITLSPACASFDMFKN 443
Query: 388 FEHRGMVFQEL 398
FE RG F+E+
Sbjct: 444 FEVRGDKFKEI 454
>gi|258514340|ref|YP_003190562.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Desulfotomaculum acetoxidans DSM 771]
gi|257778045|gb|ACV61939.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfotomaculum
acetoxidans DSM 771]
Length = 449
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 114/381 (29%), Positives = 193/381 (50%), Gaps = 33/381 (8%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+ EL+ AA+ I ++A+TGTNGK+T + +G++ + GI+ V GN+G PL
Sbjct: 89 GIEVIGELELAARFI--KAPVVAITGTNGKTTTTSLIGEIFRNNGIKTLVAGNIGLPL-- 144
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
+ P + V EVSS+Q+E +F P V+V+LN+TPDHL+RH TM+NYA
Sbjct: 145 ----VTEVEKYGPG-DIIVAEVSSFQLET-TVHFRPNVAVILNITPDHLDRHATMQNYAQ 198
Query: 145 TKCHLFSHMVNTKLGLLPFGNQ---HLNEAIKGHRFNLAWIGAFP-GVKIDTEAKTASFE 200
K +++ +++ +L + + L + G + GV + E A+ +
Sbjct: 199 AKANIYKQQLSSDYTVLNYDDSLTASLAVKVPGRVIFFSRKHILDRGVFVRNEEIIAALD 258
Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
+ ++ +K+ G HN N A+VAA G +GV + L +T++ HR
Sbjct: 259 GDETAIC---RVDEVKIPGAHNLENALASVAA----GFVLGVGRQVLANTLKTFPGVEHR 311
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
++ V +I GV +++DSK TN +A GL V++ GG+ K + F++ +
Sbjct: 312 LEFVA-EINGVRYINDSKGTNPDAAVKGLQAYS-QPIVLIAGGRNK------GSDFKEFM 363
Query: 319 EPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
+ R ++ G + + G + AV A + A +GD ++LSP
Sbjct: 364 QAAKEKVRTMVVLGECAQELLEAAQAVGFG-NVIQATDFISAVKLAAQTARSGDVVLLSP 422
Query: 378 GCASFDEFRNFEHRGMVFQEL 398
CAS+D F+N+E RG +F+E+
Sbjct: 423 ACASWDMFKNYEERGRLFKEI 443
>gi|261367771|ref|ZP_05980654.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Subdoligranulum
variabile DSM 15176]
gi|282570568|gb|EFB76103.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Subdoligranulum
variabile DSM 15176]
Length = 465
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 124/406 (30%), Positives = 191/406 (47%), Gaps = 44/406 (10%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
++ L L++G V SE++ + P +I+AVTG++GK+T T + +M+ G
Sbjct: 87 YEYYKPELQAALKAGAMVTSEVELFFEFCP--CEIIAVTGSDGKTTTTTLISKMMEAAGR 144
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTP 130
+ F+GGN+G L L P+ VAVVE+SS+Q+ + P V+VV N+TP
Sbjct: 145 KVFLGGNIGAAL------LPQLADVTPE-AVAVVELSSFQLISMRR--SPKVAVVTNVTP 195
Query: 131 DHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQ---HLNEAIKGH-----RFNLAWI 182
+HL+ HK M+ Y K ++ V +L + N+ + KG R +
Sbjct: 196 NHLDHHKDMQEYIDAKRNILLWQVPPCRAVLGYENEISRSMQSDCKGEQVWFTRLHETDN 255
Query: 183 GAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242
GAF + DT + V V S+++L G HN N A +V G V V
Sbjct: 256 GAFLRAEDDTLCYAENGTVTPVVARSEVKLR-----GLHNVENLLAAIAAVWGR---VPV 307
Query: 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ 302
EA+ HR++ V R + GVT+ +DS A++ T GL K +++ GG
Sbjct: 308 EAMRQVASTFTGVEHRIEPV-RTLDGVTYYNDSIASSPTRTIAGLRSFD-QKIILIAGGY 365
Query: 303 AKVLNGQESNGFEKLI-EPLNHHRCVITFGYSGVLIWKTL------VNNGLSIPCFAVAN 355
K + +E L E L H + ++ G + I K + N+ L I N
Sbjct: 366 DKKIP------YEPLAPEILAHVKTLVLMGATAPRIEKAVREHPDFPNSDLKI--VHADN 417
Query: 356 MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 401
M+DAV AR A GD + LSP ASFD + NFE RG ++ + +
Sbjct: 418 MQDAVEKARAAAVPGDVVSLSPASASFDLYPNFEVRGRDYKRIVMA 463
>gi|261378423|ref|ZP_05982996.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
cinerea ATCC 14685]
gi|269145199|gb|EEZ71617.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
cinerea ATCC 14685]
Length = 445
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 119/388 (30%), Positives = 190/388 (48%), Gaps = 40/388 (10%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G V+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGCVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA L K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEA-----ELQREGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNADDAFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + G + ++ + G H + A V A L +G+ EAL ++ +
Sbjct: 253 TGCLK---QGDEDLIATQDIPLQGLH--NAANVMAAVALCEAVGLPREALLEHVKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
PHR++ + GV ++DDSK TN+ AT + L+ + ++LGG K GQ+ F
Sbjct: 308 PHRVEKIGEK-NGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGK---GQD---FT 359
Query: 316 KLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 374
L + L + + V G I + L GL++ A +++AV A A GD ++
Sbjct: 360 PLRDALKDKAKGVFLIGVDAPQIRRDLDGCGLNMT--DCATLEEAVQTAYTQAEAGDIVL 417
Query: 375 LSPGCASFDEFRNFEHRGMVFQELAFSA 402
LSP CASFD F+ + HR VF E AF A
Sbjct: 418 LSPACASFDMFKGYAHRSEVFIE-AFKA 444
>gi|398341290|ref|ZP_10525993.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
kirschneri serovar Bim str. 1051]
Length = 463
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 121/398 (30%), Positives = 190/398 (47%), Gaps = 60/398 (15%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE+D KI+ +TGT+GKST + + +L + GGNLG P +
Sbjct: 89 VISEIDLGRYFFKG--KIIGITGTDGKSTTTSLIAHLLKQGFPDLKEGGNLGIPFTSFCK 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
I+L AV+E+SSYQ+E + VSV LNL DHLERHKTM+NY K
Sbjct: 147 ESISL---------AVLELSSYQLEDSSPLHL-NVSVFLNLASDHLERHKTMENYFQAKL 196
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAI---KGHRFNLAWIGAFPGVK--IDTEA---KTASF 199
+ + + N+ L+ ++ + E I ++ L G PG +D + KT+ F
Sbjct: 197 KI-ADLSNSNHSLIV--SEKIKERILNSTSYQCKLLSFGKTPGSNAFLDESSLKIKTSKF 253
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ +S+ L G HN N A + L+ +IG E++ + I + R PHR
Sbjct: 254 ----IYDISKFYLP-----GSHNRENLAASILA--AEEIGEKPESIQTRIPLFRGLPHRF 302
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAKVLNGQESNGFEKLI 318
QI + G+++++DSK+TNL + G+ K + ++LGG+ K + + F LI
Sbjct: 303 QIAGEKL-GISFINDSKSTNLHSMLAGMATWKNLDQTCLILGGRPKQEDPKPLYDF--LI 359
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR----MATNGD--- 371
+ + CV+ FG + +W+ + N + V N+ D ++ A N D
Sbjct: 360 KGIG---CVVLFGEARS-VWENGIRNIIGEKLHCVENLNDTFEIFKKGYILTAANSDKDS 415
Query: 372 -----------AIVLSPGCASFDEFRNFEHRGMVFQEL 398
+ V SP CASFD+++NFE RG F L
Sbjct: 416 IFRLSHGISISSFVFSPACASFDQYKNFEERGNHFLSL 453
>gi|408418665|ref|YP_006760079.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase MurD
[Desulfobacula toluolica Tol2]
gi|405105878|emb|CCK79375.1| MurD: UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase
[Desulfobacula toluolica Tol2]
Length = 451
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 115/382 (30%), Positives = 186/382 (48%), Gaps = 37/382 (9%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+G + ELD ++ + I+A+TGTNGK+T T +G ML G+ FVGGN+G PL
Sbjct: 89 DNGVGITGELDIFSRY--NDLPIIAITGTNGKTTTTTLIGDMLKACGMNPFVGGNIGTPL 146
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ H + K + V E+SS+Q+++ K F P V V+LN++ DHL+R+ + Y
Sbjct: 147 VD---HLM----DKKNTDIIVAEISSFQLDLA-KRFKPDVGVLLNISEDHLDRYDSYSAY 198
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
+K +F H + ++ NQ +NE K + + I AF K A+
Sbjct: 199 KDSKWRIFKHQDASDKAII---NQSVNEFDKKSQKLKSMIFAFSSQKSIQTQWGANIGSD 255
Query: 203 AVGVVSQLQLHNMK------VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
+ ++++ H +K + GRHN N A A L+ LG G + + ++ +
Sbjct: 256 TIDIITKNVSHKIKAAQVKGLQGRHNRENIAAAVLACLGA--GAKMSGILKGLKTFKNLA 313
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK 316
HR++ + + I G+++ +DSKATN +A L + + +++LGG+ K F
Sbjct: 314 HRIEFI-KTINGISFYNDSKATNTDAVIRAL-ECFDNNIILILGGREK------DTDFSL 365
Query: 317 LIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFA--VANMKDAVNHARRMATNGDAI 373
LI+ + + ++ G S KT + N C M AV A A D I
Sbjct: 366 LIKAVKQKVKTIVAIGES-----KTHIKNTFETVCIVKKAQTMNHAVQKAFDSAAKNDII 420
Query: 374 VLSPGCASFDEFRNFEHRGMVF 395
+LSP CASFD + N+ RG F
Sbjct: 421 LLSPACASFDMYENYASRGDDF 442
>gi|332295506|ref|YP_004437429.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermodesulfobium
narugense DSM 14796]
gi|332178609|gb|AEE14298.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermodesulfobium
narugense DSM 14796]
Length = 464
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 111/381 (29%), Positives = 181/381 (47%), Gaps = 49/381 (12%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+ ELD ++P + + VTGTNGK+TV ++G + +V GN+G PLSE +
Sbjct: 100 VVGELDLVFGLLPDGVNTIGVTGTNGKTTVTEWIGYGFEVAKMPYYVAGNVGTPLSEIIY 159
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFC-PTVSVVLNLTPDHLERHKTMKNYALTK 146
+ + V+E+SSYQ+E N F P ++++ NLT DH++R+ + Y K
Sbjct: 160 DIVTGSN-------LVLELSSYQIE--NSIFLKPKIAMITNLTLDHIDRYANLDEYFNAK 210
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV-- 204
HLF + N + + +L + IK NL KI +K F + V
Sbjct: 211 VHLFKNQENG-YSIYNKDDPYLEKNIK----NLTL-----KTKILNVSKRKDFSIAGVIE 260
Query: 205 ---------GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
V + L ++ + G HN NA A S L L V+ + + +
Sbjct: 261 NKIFVKDNLDFVKIIDLSDLSLKGEHNIENALFVA-SSLYLS-SVEPKHIEKALSTFSGV 318
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL-KGHKCVILLGGQAKVLNGQESNGF 314
HR + + +G+TW++DSK+TN E+T L + + +++LGG+ K +
Sbjct: 319 EHRQERFYTH-KGITWINDSKSTNPESTIVALKTWGENNNLILILGGKDK------NTPL 371
Query: 315 EKLIEPLNHHRC--VITFGYSGVLIWKTLVNNGLSIP-CFAVANMKDAVNHARRMATNGD 371
++L+ L C +I FG + K ++ S P F + ++ D ++ A +A D
Sbjct: 372 DELVS-LASKTCKAIILFGEAK----KRFFDHFKSFPNLFVLNSLDDVIDKAFELAKPND 426
Query: 372 AIVLSPGCASFDEFRNFEHRG 392
++ SP CASFD F NFE RG
Sbjct: 427 IVLFSPACASFDMFANFEERG 447
>gi|392957433|ref|ZP_10322956.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
macauensis ZFHKF-1]
gi|391876396|gb|EIT84993.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
macauensis ZFHKF-1]
Length = 450
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 110/381 (28%), Positives = 190/381 (49%), Gaps = 50/381 (13%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A +V + +A+TG+NGK+T T +G+M+ G V GN+G LSE A
Sbjct: 99 VITEVEIAGEV--AEAETIAITGSNGKTTTTTLIGEMMKDSGRTPIVAGNIGTVLSEVA- 155
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ K + + E+SS+Q+ + ++ P ++V+LN+ HL+ H T+ YA K
Sbjct: 156 ------DASTKDDLLIAELSSFQL-MGTIHYAPKIAVLLNIFEAHLDYHGTLDEYAKAKG 208
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
+F++ +T + ++ + +KG + GVK+ + + + P G +
Sbjct: 209 RIFANQKSTDFAVYNADDEKVVSLVKGTQ----------GVKVPF---STTQDCPTGGCI 255
Query: 208 SQ--LQLHNMKVM--------GRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTP 255
L KV+ G+HN N AAV A ++LG G E + + +
Sbjct: 256 KDGVLYFKGEKVISEREIVLPGKHNKENILAAVCA-ALLG---GAKKEQIVAVLTSFTGV 311
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
HR+Q V I G + +DSKATN+ AT + + + ++L GG + N F+
Sbjct: 312 KHRLQFVEM-IAGRKFYNDSKATNILATQAAISAFE-QEIILLAGGLDR------GNEFD 363
Query: 316 KLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVA-NMKDAVNHARRMATNGDAIV 374
+LI L + +I FG S + + + G +P +A ++ +AV A + GD I+
Sbjct: 364 ELIPQLKSVKTLILFGESAPKLARAAKDAG--VPTIMMAHDVAEAVPLAYEASNEGDIIL 421
Query: 375 LSPGCASFDEFRNFEHRGMVF 395
LSP CAS+D+++ FE RG +F
Sbjct: 422 LSPACASWDQYKTFEQRGDIF 442
>gi|256752933|ref|ZP_05493764.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
ethanolicus CCSD1]
gi|256748188|gb|EEU61261.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
ethanolicus CCSD1]
Length = 450
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 120/385 (31%), Positives = 196/385 (50%), Gaps = 45/385 (11%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
++ E++FA + I A+TGTNGK+T + +G+M + G + +V GN+G PL A
Sbjct: 94 ELLGEVEFAYRF--SKAPIYAITGTNGKTTTTSLLGEMFKNTGRKVYVAGNIGYPLIYAV 151
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ +++ F VA E+SS+Q+E K F P +S ++N+TPDHL+RHKT +NY K
Sbjct: 152 -----MEAAEGDFIVA--EISSFQLETI-KEFKPKISCIINITPDHLDRHKTFENYRDIK 203
Query: 147 CHLFSHMVNTKLGLLPFG--------NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+F + + +L + N+ R +L GA+ K S
Sbjct: 204 GRIFENQREDEYTVLNYDDPVTWSLKNKAKCRVFPFSRKSLLENGAY--------IKDGS 255
Query: 199 FEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+ G ++ + + + G HN NA +AA SV L G+ + + +T++ + H
Sbjct: 256 IYISVNGNAEKIIDIEEIYIPGEHNLENA-LAASSVAYLS-GISADVIANTLKTFKGVEH 313
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R++ V +I GV + +DSK TN +A+ + LK V++ GG K G E F++
Sbjct: 314 RIEFVD-EINGVKFYNDSKGTNPDASIKAIQALK-TPIVLIAGGYDK---GSE---FDEF 365
Query: 318 IEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIP----CFAVANMKDAVNHARRMATNGDA 372
++ N + +I G + I T S P FA +++AV A A GD+
Sbjct: 366 VKAFNGKVKKLILIGQTAKKIRDTA--RKYSYPEDDILFA-GTLEEAVKKAYESAKEGDS 422
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQE 397
++LSP CAS+D FRNFE RG +F++
Sbjct: 423 VLLSPACASWDMFRNFEERGRIFKK 447
>gi|145637113|ref|ZP_01792776.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae PittHH]
gi|145269767|gb|EDK09707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae PittHH]
Length = 437
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 119/410 (29%), Positives = 189/410 (46%), Gaps = 53/410 (12%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA L++G V+ +++ + I + +TG+NGKSTV
Sbjct: 62 WLLESDMIVISPGLAVKTLEIQTALKAGVEVIGDIELFCHAATKPI--VGITGSNGKSTV 119
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G++ +GGN+G P AL ++ V+E+SS+Q+E
Sbjct: 120 TTLVYEMAKAAGVKVGMGGNIGIP---------ALSLLNEDCELYVLELSSFQLETTYS- 169
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL------PFGNQHLNEA 171
+ VLN+T DH++R+ +++Y K ++ N K+G+L FG NE
Sbjct: 170 LKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYH---NAKVGVLNNEDRLTFGE---NEN 223
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
H + A A +K + + + + L ++GRHNY N A
Sbjct: 224 QAKHTVSFAENSADYWLKTENGKQYLMVKDEVI-----LPCEEATLVGRHNYMNILAAIA 278
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ I +D ++ + + + HR Q+VH+ G+ W++DSKATN+ +T L L
Sbjct: 279 LAQAIGINLD--SIRTALRHFKGLDHRFQLVHQ-ANGIRWINDSKATNVGSTVAALAGLY 335
Query: 292 GH-KCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFGYSGVLIWKTLVNNGLSIP 349
K +LLGG K + F +L E +N H FG G L+ K S
Sbjct: 336 IEGKLHLLLGGDGKGAD------FSELAELINQPHIICYCFGRDGALLAK------FSSQ 383
Query: 350 CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
+ MK A+ R +GD ++LSP CAS D+F +FE RG F LA
Sbjct: 384 SYLFETMKQAIEFLRPTLQSGDMVLLSPACASLDQFASFEKRGEEFTHLA 433
>gi|157413927|ref|YP_001484793.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Prochlorococcus marinus str. MIT 9215]
gi|157388502|gb|ABV51207.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
marinus str. MIT 9215]
Length = 478
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 105/395 (26%), Positives = 192/395 (48%), Gaps = 40/395 (10%)
Query: 16 TGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVG 75
T + L + G +V+ E++ A +++ + + +TGTNGK+TV + +L G+ A
Sbjct: 94 TTIMELKKKGLKVIGEINVAWEIL-KDTNWIGITGTNGKTTVTHLLSHILCDTGLYAPFA 152
Query: 76 GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLER 135
GN+G PL + A+ K V E+SSYQ+EI + P + + T DHLER
Sbjct: 153 GNIGTPLCKYAY-----SKKTEKIDWVVAELSSYQIEISPE-VKPNIGIWTTFTEDHLER 206
Query: 136 HKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAK 195
HKT++NY K L + + + + +++L + H +L+ GV I T
Sbjct: 207 HKTLENYFNIKKSL---LEKSDFRIYNYDDKNL----RNHYSSLS-----RGVWITTSFD 254
Query: 196 TASFEVPAVGVVSQ----------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
++F + Q +L + + G HN N + + +G+ + +
Sbjct: 255 KSNFIQCDYWIDDQAFIVERGKKLFKLEHFSLKGMHNLQNLLLVIAA--ARKVGLSGKEI 312
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKV 305
++ + PHRM+ ++++ + ++DSKATN +++ G+ ++G + +I+ GG+
Sbjct: 313 KDSLSNYKQLPHRMETIYKN-DDLEIINDSKATNFDSSIAGISSIEG-QIIIIAGGR--- 367
Query: 306 LNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR 365
L G E + E + +CV FG S ++ L+N G F + +K+ +N
Sbjct: 368 LKGNEYS--EWIKVLKKKVKCVFLFGESSKVLKMALINEGFKKNIFEFSELKELLNFVFH 425
Query: 366 MATNGD--AIVLSPGCASFDEFRNFEHRGMVFQEL 398
N ++ SP C+SFD+F+N+E RG F++L
Sbjct: 426 YLQNNKVGTLLFSPSCSSFDQFKNYEERGDYFKKL 460
>gi|298372208|ref|ZP_06982198.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroidetes
oral taxon 274 str. F0058]
gi|298275112|gb|EFI16663.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroidetes
oral taxon 274 str. F0058]
Length = 468
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 103/399 (25%), Positives = 188/399 (47%), Gaps = 44/399 (11%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ L + G V+SE++FA + + K + +TG+NGK+T +L + G + GN
Sbjct: 90 IKSLREKGIPVISEIEFAGRYT--NAKTICITGSNGKTTTTMLTYHILRNAGYNVGLAGN 147
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERH 136
+G A+ ++ F ++E+SS+Q++ Y F ++++ N+TPDHL+R+
Sbjct: 148 VGKSF--------AMQVAEDNFDYYILEISSFQLD--GMYSFRADIAIITNITPDHLDRY 197
Query: 137 K-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAK 195
+NY +K + + + G+ + I+ ++ KI +
Sbjct: 198 DYKFQNYVDSKFRILQNQTENDFFIFWAGDSTVANEIEKRGTSI------KARKIPFDLT 251
Query: 196 TASFEVPAVGVVS---------------QLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240
+ + VP V +++ +N+ + G HN +N+ A L+ GV
Sbjct: 252 SQTDNVPNYAFVDGKDIIFNNLTNKLFLEMETNNLPLKGNHNLYNSMAAGLA--SQVAGV 309
Query: 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG 300
+A+ ++E HRM+ V ++GV +++DSKATN+ + L + V++LG
Sbjct: 310 SKDAIRRSLETFEGVEHRMEYVAT-VRGVRYINDSKATNVNSCWYALQSMT-TPVVLILG 367
Query: 301 GQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNN--GLSIPCFAVANMKD 358
G K G + + +L+ HH + ++ + N G IP +M++
Sbjct: 368 GTDK---GNDYSDISELVSDRVHHLIFLGVDNDKLIKFFGCHRNKEGKKIPYSEARSMEE 424
Query: 359 AVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
V A ++A NGD ++LSP CASFD F N+E RG F+E
Sbjct: 425 CVQQAYKVAKNGDTVLLSPCCASFDLFNNYEDRGRQFKE 463
>gi|256821912|ref|YP_003145875.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kangiella
koreensis DSM 16069]
gi|256795451|gb|ACV26107.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kangiella koreensis
DSM 16069]
Length = 444
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 119/389 (30%), Positives = 188/389 (48%), Gaps = 50/389 (12%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+SG V+ +++ AQ ++ ++A+TG+NGKSTV VG+++N G +A VGGN+G P
Sbjct: 89 ESGVSVIGDIELFAQA--NTLPVIAITGSNGKSTVTDLVGELINASGKKALVGGNIGVP- 145
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
AL K + +E+SS+Q+E + P + VLN++ DHL+R+K + Y
Sbjct: 146 --------ALDLLKLEGDYVALELSSFQLE-STRSLEPVAATVLNVSEDHLDRYKNYQEY 196
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH---RFNLAWIGAFPGVKIDTEAKTASF 199
K +++ T L N + A G RF L+ +D E T
Sbjct: 197 IDAKRSIYAK-ARTCLVNADDENTWIKSAESGQNILRFGLSNNSDKIDWAVDFETCTIMH 255
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP---- 255
+ + L+L + + G HN N AVA L L VD+ + T +L
Sbjct: 256 DGNEI-----LKLDELTLQGIHNALNVAVA----LAL---VDIAEIELTQAVLDAAKSYQ 303
Query: 256 --PHRMQIVH-RDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQ 309
PHR Q+V +D G+T+++DSKATN+ AT + + G +++ GG AK G
Sbjct: 304 GLPHRSQLVAIKD--GITFINDSKATNVGATVAAIHSFEPQFGKNIILIAGGDAK---GA 358
Query: 310 ESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN 369
+ + +++I+ + V+ FG I K V+N+++AV A A
Sbjct: 359 DLSSLQEIIK--ETVKAVVCFGKDAPAIAKL-----APAKTQLVSNLEEAVRIAYEQAQK 411
Query: 370 GDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
GD ++LSP CAS D F N+ RG F L
Sbjct: 412 GDLVLLSPACASLDMFANYMQRGEQFAHL 440
>gi|326391690|ref|ZP_08213215.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
ethanolicus JW 200]
gi|325992268|gb|EGD50735.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
ethanolicus JW 200]
Length = 454
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 195/382 (51%), Gaps = 39/382 (10%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
V+ E++FA + I A+TGTNGK+T + +G+M + G + +V GN+G PL A
Sbjct: 94 EVLGEVEFAYRF--SKAPIYAITGTNGKTTTTSLLGEMFKNAGRKVYVAGNIGYPLIYAV 151
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ +++ F VA E+SS+Q+E K F P +S ++N+TPDHL RHKT ++Y K
Sbjct: 152 -----MEATEGDFIVA--EISSFQLETI-KEFKPKISCIINITPDHLNRHKTFESYRDIK 203
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT-----EAKTASFEV 201
+F + + +L F ++ + N A FP + + K S +
Sbjct: 204 GRIFENQRGDEYTVLNF-----DDPVTWSLKNKAKCRVFPFSRKSSLENGAYVKDGSIYI 258
Query: 202 PAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
G ++ + + + G HN NA +AA SV L G+ + ST++ + HR++
Sbjct: 259 SVNGNAKKIIDIEEIYIPGEHNLENA-LAASSVAYLS-GISANVIASTLKSFKGVEHRIE 316
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP 320
V +I GV + +DSK TN +A+ + LK V++ GG K G E F++ ++
Sbjct: 317 FVD-EINGVKFYNDSKGTNPDASIKAIQALK-TPIVLIAGGYDK---GSE---FDEFVKA 368
Query: 321 LNHH-RCVITFGYSGVLIWKTLVNNGLSIP----CFAVANMKDAVNHARRMATNGDAIVL 375
N + +I G + I T S P FA +++AV A A GD+++L
Sbjct: 369 FNGKVKKLILIGQTAKKIRDTA--RKYSYPEDDILFA-GTLEEAVKKAYESAKEGDSVLL 425
Query: 376 SPGCASFDEFRNFEHRGMVFQE 397
SP CAS+D FRNFE RG +F++
Sbjct: 426 SPACASWDMFRNFEERGRIFKK 447
>gi|443642438|ref|ZP_21126288.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. syringae B64]
gi|443282455|gb|ELS41460.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. syringae B64]
Length = 448
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 115/370 (31%), Positives = 181/370 (48%), Gaps = 55/370 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL + ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDMLSDEVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYNGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + + +
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKYLAFQFENL-----MPV 265
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
+KV G HN NA A G +G+ +A+ +++ HR Q + R+ GV +
Sbjct: 266 RELKVRGAHNQTNALAALAL--GHAVGLPFDAMLASLREFTGLEHRCQWL-REHDGVHYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCV 327
+DSKATN+ A + D+ G K V++ GG K + F L P+ H R
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGAD------FSGLRAPVAKHCRAA 375
Query: 328 ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ G LI + L G ++P V ++ AV H+ ++A GDA++LSP CAS D F+N
Sbjct: 376 VLLGRDAELIAQAL---GDAVPLVRVDTVQAAVEHSAKLALRGDAVLLSPACASLDMFKN 432
Query: 388 FEHRGMVFQE 397
+E RG VF +
Sbjct: 433 YEERGRVFAQ 442
>gi|451344324|ref|ZP_21913384.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Eggerthia
catenaformis OT 569 = DSM 20559]
gi|449337038|gb|EMD16206.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Eggerthia
catenaformis OT 569 = DSM 20559]
Length = 447
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 110/380 (28%), Positives = 192/380 (50%), Gaps = 26/380 (6%)
Query: 21 LLQSGKRVMSELDFAAQV-IPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG 79
L Q G V +E++ A Q+ +P++ +AVTGTNGK+T V+ + ++L + GN G
Sbjct: 88 LKQRGIPVYTEIELAYQMALPQNY--IAVTGTNGKTTTVSLIYEVLKRHHSAVHICGNYG 145
Query: 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTM 139
P + +S VVE+S++Q+ I F P VS VLNLTPDHL+ ++
Sbjct: 146 IPYCDVVLDYKLYENSGHD---VVVEMSNFQL-IDIDLFHPHVSSVLNLTPDHLDYMDSL 201
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKTAS 198
Y +K ++ + + L + L E +K + + + F + D E
Sbjct: 202 DEYYASKMRIYENTDLQDIYALNLDDFTLQEYLKRYPVPCS-VETFSVLHHADCELINDI 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
V+++ ++K++G HN N V+ +++ G+ ++ + I + HR
Sbjct: 261 IYYKGEPVIAR---SDIKIVGLHNVSNIMVSIIALRHA--GLSLQDIKEGISLFHGVEHR 315
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
++ V R+++GV + +DSK TN +A + H ++L+GG K L+ ++ + I
Sbjct: 316 LEFV-REVKGVQYYNDSKGTNTDAAVIAIKAFD-HSVILLMGGHEKGLDIRDVAQYNDRI 373
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
+ +ITFG SG K + N+ + C +M++AV A ++A GD ++LSP
Sbjct: 374 ------KILITFGESGERFAKDM-NHPHTYIC---EHMREAVIKASQLAIEGDIVLLSPS 423
Query: 379 CASFDEFRNFEHRGMVFQEL 398
+SFDEF+N RG VF+E+
Sbjct: 424 TSSFDEFKNMAERGNVFKEM 443
>gi|338536724|ref|YP_004670058.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Myxococcus fulvus
HW-1]
gi|337262820|gb|AEI68980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Myxococcus fulvus
HW-1]
Length = 455
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 122/390 (31%), Positives = 180/390 (46%), Gaps = 46/390 (11%)
Query: 24 SGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
+G V E++ A +V+ + + +TGTNGKST G + FVGGNLG P S
Sbjct: 93 AGVAVWGEVELAGRVLA-GVPLFGITGTNGKSTTTALTGALFAAGDKRTFVGGNLGRPFS 151
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
EAA S + VVE+SSYQ+E + P + +LNLTPDH++R+ + Y
Sbjct: 152 EAAM-------SPEAWDALVVELSSYQLE-GIRALRPRGAAILNLTPDHIDRYPSHAAYG 203
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQH------LNEAIKGHRFNLAWIG-------AFPGVKI 190
K +F +N + G N L A K + + G A G+ +
Sbjct: 204 EAKARIF---LNQQAGDFAVVNADDADVLGLARAAKASVYGFSLTGEPVADAPALAGLAV 260
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTI 249
A+ F + +G L N + G HN NA AAL LG GV A+ + +
Sbjct: 261 ---AEPGGFRLEFLG--EHYTLTNRALRGAHNAQNAMAAALLARLG---GVASGAVQAGL 312
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
+ PHR++ V R + GV WV+DSKATN+++ L ++ GG+ K
Sbjct: 313 DGYPGLPHRLESV-RVLDGVEWVNDSKATNVDSVLVALRAFS-SGVWLIAGGKGK----- 365
Query: 310 ESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMAT 368
+ ++E + V+T G + + C +A AV AR +A
Sbjct: 366 -GAPYAPMVEAGRGKVKGVLTMGDDADTLARAYAGAARVHACGTLAQ---AVARAREVAE 421
Query: 369 NGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
GD ++LSP CASFD+F+NFE RG F+ L
Sbjct: 422 RGDTVLLSPACASFDQFKNFEDRGETFKRL 451
>gi|94501898|ref|ZP_01308408.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanobacter sp.
RED65]
gi|94425951|gb|EAT10949.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanobacter sp.
RED65]
Length = 446
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 121/386 (31%), Positives = 189/386 (48%), Gaps = 43/386 (11%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+ +G V+S++ A+ + I+A+TG+N KSTV T VG+M G++A VGGNLG P
Sbjct: 91 IDAGVPVVSDIQVFAEA--ANAPIIAITGSNAKSTVTTLVGEMAKQCGLKAAVGGNLGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
AL V V+E+SS+Q+E ++ V+ VLN++PDHL+R+ + +
Sbjct: 149 ---------ALELLNSDIDVYVMELSSFQLE-ATEHLNAKVATVLNISPDHLDRYDSYEG 198
Query: 142 YALTKCHLFS----HMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
Y TK +F+ ++N L + E I F++ GA +D A+
Sbjct: 199 YYQTKYKIFNGCEKAVINLDDNLAQPKTLNCPEQIG---FSIDGKGA--DFVLDRTAQPW 253
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
V ++S QL K+ G HNY N A+AAL+ LG G+D++ + ++ H
Sbjct: 254 QLIVEGDALLSVDQL---KIKGLHNYSN-ALAALA-LGHGFGLDMDGMLKALKSFPGLDH 308
Query: 258 RMQIVHRDIQGVTWVDDSKATNL---EATCTGLMDLKGHKCVILLGGQAKVLNGQESNGF 314
R Q + + + V + +DSK TN+ EA GL + V++LGG K +
Sbjct: 309 RCQWI-KQVDEVDFYNDSKGTNVGATEAALKGLGPEYAKRIVLMLGGVGK-------DAD 360
Query: 315 EKLIEPL--NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 372
K++ P+ + VI +G +I K L L + + A A R A + A
Sbjct: 361 FKVLRPVIDQYVSKVIVYGQDQDIIAKDLSGVDLD----RAESFEQAFEMAYRNADHKGA 416
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQEL 398
+V SP CASFD F FE RG F+ +
Sbjct: 417 VVFSPACASFDMFSGFEARGEAFKSM 442
>gi|421129128|ref|ZP_15589337.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
kirschneri str. 2008720114]
gi|410359660|gb|EKP06730.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
kirschneri str. 2008720114]
Length = 463
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 121/398 (30%), Positives = 190/398 (47%), Gaps = 60/398 (15%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE+D KI+ +TGT+GKST + + +L + GGNLG P +
Sbjct: 89 VISEIDLGRYFFKG--KIIGITGTDGKSTTTSLIAHLLKQGFPDLKEGGNLGIPFTSFCK 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
I+L AV+E+SSYQ+E + VSV LNL DHLERHKTM+NY K
Sbjct: 147 ESISL---------AVLELSSYQLEDSSPLHL-NVSVFLNLASDHLERHKTMENYFQAKL 196
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAI---KGHRFNLAWIGAFPGVK--IDTEA---KTASF 199
+ + + N+ L+ F + + E I ++ L G PG +D + KT+ F
Sbjct: 197 KI-ADLSNSNHSLIVF--EKIKERILNSTSYQCKLLSFGKTPGSNAFLDESSLKIKTSKF 253
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ +S+ L G HN N A + L+ +IG E++ + I + R PHR
Sbjct: 254 ----IYDISKFYLP-----GSHNRENLAASILA--AEEIGEKPESIQTRIPLFRGLPHRF 302
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAKVLNGQESNGFEKLI 318
QI + G+++++DSK+TNL + G+ K + ++LGG+ K + + F LI
Sbjct: 303 QIAGEKL-GISFINDSKSTNLHSMLAGMATWKNLDQTCLILGGRPKQEDPKPLYDF--LI 359
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR--MATNGD----- 371
+ + CV+ FG + +W+ + N + V N+ D ++ + T D
Sbjct: 360 KGIG---CVVLFGEARS-VWENGIRNIIGEKLHCVENLNDTFEIFKKGYILTAADSGKDS 415
Query: 372 -----------AIVLSPGCASFDEFRNFEHRGMVFQEL 398
+ V SP CASFD+++NFE RG F L
Sbjct: 416 IFRLSHGISISSFVFSPACASFDQYKNFEERGNHFLSL 453
>gi|312867256|ref|ZP_07727466.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
parasanguinis F0405]
gi|311097385|gb|EFQ55619.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
parasanguinis F0405]
Length = 449
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 188/378 (49%), Gaps = 33/378 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LEKGIPVLTEVELAYLI--SDAPIIGITGSNGKTTTTTMIGEVLTAAGQGGLLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + + V V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASQVA-------QTATEKDVLVMELSSFQL-MGIEAFHPEIAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K +L +M + +L F NQ L + + K + + G + E
Sbjct: 203 YVAAKWNLQKNMTEKDVIVLNF-NQDLAKELATKTKARVLPFSTVEKVDGAYL--EDGLL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F+ V ++ + V G HN N A+A ++V + GV+ E + T+ H
Sbjct: 260 KFKGEVV-----MRADELGVPGSHNVEN-ALATIAVAKVR-GVENEVIKETLSAFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R+Q V +IQGV + +DSK+TN+ AT L K +++ GG + N F++L
Sbjct: 313 RLQYVD-EIQGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDEL 365
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
+ + + ++ G S + + V + +P A++ DA A +A+ GD ++LSP
Sbjct: 366 VPHITGLKEMVILGESAPRVKR--VADKAGVPYVDAADVADATKKAFYLASPGDVVLLSP 423
Query: 378 GCASFDEFRNFEHRGMVF 395
AS+D + NFE RG F
Sbjct: 424 ANASWDMYPNFEVRGDEF 441
>gi|18311441|ref|NP_563375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
perfringens str. 13]
gi|30316081|sp|Q8XHM4.1|MURD_CLOPE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|18146125|dbj|BAB82165.1| UDP-N-acetylmuramoylalanine D-glutamate ligase [Clostridium
perfringens str. 13]
Length = 458
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 111/371 (29%), Positives = 186/371 (50%), Gaps = 50/371 (13%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
++ VTG++GK+T T V ++L+ G + + GGN+G PL F I + K V
Sbjct: 118 RVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPL----FSNIEEIKEEDK---VV 170
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+ + V++V N+TP+HL+ HK M+ Y K ++F + L ++
Sbjct: 171 LELSSFQLMTMDVEI--DVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLVIND 228
Query: 164 GNQ---HLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ--LQLHNMKVM 218
N+ +L++ KG + F K TE + A ++ + V + + N+ +
Sbjct: 229 ENEITKNLDKEAKGK------VVRFSSKK--TEGEDAYYKDGKLYVHGKEVCKKDNIIIK 280
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN N A L+V V +E++ E HR + + R++ GV + +DS A+
Sbjct: 281 GMHNVENYLAAFLAVYD---EVSIESMKKVAETFGGVHHRCEFI-REVDGVKYYNDSIAS 336
Query: 279 NLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI--EPLNHH-----RCVITFG 331
T GL K VILL G G++K + EPL + + ++ FG
Sbjct: 337 TPTRTLAGLKAF--EKPVILLAG-----------GYDKHVPFEPLAYEGYEKIKAIVLFG 383
Query: 332 YSGVLI---WKTLVNN-GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ I +K L G+ +P ++ ++++ VN A+ +A +GD I LSP CASFD F+N
Sbjct: 384 VTKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVNIAKSIAESGDIITLSPACASFDMFKN 443
Query: 388 FEHRGMVFQEL 398
FE RG F+E+
Sbjct: 444 FEVRGDKFKEI 454
>gi|403745271|ref|ZP_10954209.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
hesperidum URH17-3-68]
gi|403121499|gb|EJY55792.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
hesperidum URH17-3-68]
Length = 453
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 119/386 (30%), Positives = 186/386 (48%), Gaps = 36/386 (9%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G + SE++ A+ R I A+TG+NGK+T T V +ML G FVGGN+G
Sbjct: 90 LAAKGVPIFSEIEVASWFTERPI--YAITGSNGKTTTTTLVSEMLRAAGRLPFVGGNIGT 147
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P +EA + + +P V+EVSS+Q+ + F P + +LN P HL+ H T +
Sbjct: 148 PFAEA---VLEEQTDEP----VVLEVSSFQL-MGTWRFRPRGAALLNFYPAHLDYHGTFE 199
Query: 141 NYALTKCHLFSHM-------VNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTE 193
Y K +FS+M +N L+ G L + H F++ + GV ++ E
Sbjct: 200 AYQEAKWKMFSNMEQGDIAVLNADQDLVAGGASRLRADV--HYFSVDHVRFAFGVGVEDE 257
Query: 194 AKTASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
+ G V +L + + + GRHN N V A + L G EA+
Sbjct: 258 ----DIVIVERGEVRRLLPIAEVALPGRHNLQN--VVAAAALAQAAGASDEAIRQVAATF 311
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
+ HR++ V R++ GV + +DSKATN +A L H V + GG + L+
Sbjct: 312 QGVEHRLEFV-RELHGVRYYNDSKATNPDAARQALRSF-AHGIVWIAGGLDRGLS----- 364
Query: 313 GFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD 371
F+ L+ L + + G + + T G+ A +++ +AV A R+A GD
Sbjct: 365 -FDSLLPELRGRVKAAVCLGQTREALRNTCQRAGVEQIELA-SSLDEAVQRAHRLAEPGD 422
Query: 372 AIVLSPGCASFDEFRNFEHRGMVFQE 397
++LSP CAS+D F +FE RG +F+E
Sbjct: 423 TVLLSPACASWDMFSSFEVRGSMFKE 448
>gi|256820163|ref|YP_003141442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Capnocytophaga
ochracea DSM 7271]
gi|256581746|gb|ACU92881.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Capnocytophaga
ochracea DSM 7271]
Length = 444
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 103/383 (26%), Positives = 189/383 (49%), Gaps = 37/383 (9%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V+SE++FA+Q I + +TG+NGK+T + G++ +GGN+G
Sbjct: 84 EKGIAVISEIEFASQYTDSLI--VGITGSNGKTTTTLLTYHIFKEAGLQVGLGGNIGYSF 141
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKN 141
+E + + P + V +E+SS+Q++ ++F P ++V+LN+TPDHL+R+ +N
Sbjct: 142 AEL------VATKNPPYYV--LEISSFQLD-GIEHFAPHIAVLLNITPDHLDRYDYKFEN 192
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF-- 199
Y +K + + + ++ + + + H I I+ E +F
Sbjct: 193 YIDSKFRIAMNQTENDYLIYDADDEVITQWLSTHTIKSKLIP----FSIEKELPQGAFLK 248
Query: 200 ----EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
+ +++ + + + G+HN N A SV + + +L +++ +
Sbjct: 249 DNKIYIMLENQTTEIDVEEISLRGKHNIKNTMAA--SVAARLVNIRNNSLRESLKGFKGA 306
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
PHR++ V + + GVT+V+DSKATN+ + L +K V ++GGQ K N +
Sbjct: 307 PHRLEEV-KVVDGVTYVNDSKATNVNSVFYALDTIKT-PIVWIVGGQDK------GNDYN 358
Query: 316 KLIEPLNHH--RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
L+ P H R ++ G I ++ N ++ +M +AV A+ A GD +
Sbjct: 359 SLL-PYVHEKVRAIVCLGVDNTPIIQSFYNTIDTL--VETRSMDEAVKLAQSFAQEGDTV 415
Query: 374 VLSPGCASFDEFRNFEHRGMVFQ 396
+LSP CASFD F+N+E RG +F+
Sbjct: 416 LLSPACASFDLFKNYEERGDLFK 438
>gi|322436304|ref|YP_004218516.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Granulicella
tundricola MP5ACTX9]
gi|321164031|gb|ADW69736.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Granulicella
tundricola MP5ACTX9]
Length = 451
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 113/380 (29%), Positives = 190/380 (50%), Gaps = 31/380 (8%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+ EL+ A++ + S+ +A+TG+NGK+T T G++ + VGGN+G P+ +
Sbjct: 92 GTAVIGELELASRFLDGSV--IAITGSNGKTTTTTLTGKIFADAALPTLVGGNIGLPVID 149
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
+ S+P+ +V+EVSS+Q+E F P +++VLN+TPDHL+RHKT + Y
Sbjct: 150 L------IAESRPE-TWSVLEVSSFQLETATT-FKPRIAMVLNVTPDHLDRHKTFERYWE 201
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS-FEVPA 203
K + + + +L + + + R + W VK S F +
Sbjct: 202 AKARITACQESEDFLILNAEDVNAQKMAAKTRAQIYWFSGRRQVKQGAFVHGESVFFLGK 261
Query: 204 VGVVSQ--LQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
G + L + + + G HN N AAV A + G+D E + + ++ R HR+
Sbjct: 262 EGGKPEPVLPVSEIALKGAHNVENVLAAVCAARL----AGIDAETIRAAVKGFRAVEHRL 317
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319
++V R GV + +DSKATN++AT + G +IL GG+ K + + L
Sbjct: 318 ELV-RVRNGVEFYNDSKATNVDATVKAVESFAGGIHLIL-GGKDK------DSDYATLSA 369
Query: 320 PLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
L R V T G + I + L +G+ + + AV A A + + ++L+P
Sbjct: 370 LLKERVRVVYTIGSAAEKIERQL--DGV-VKIVQAGTLDKAVKLAAEAAVSDEIVLLAPA 426
Query: 379 CASFDEFRNFEHRGMVFQEL 398
C+SFD+F N+E RG VF+++
Sbjct: 427 CSSFDQFTNYEERGRVFRDV 446
>gi|148244846|ref|YP_001219540.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
Vesicomyosocius okutanii HA]
gi|146326673|dbj|BAF61816.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
Vesicomyosocius okutanii HA]
Length = 432
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 111/365 (30%), Positives = 185/365 (50%), Gaps = 49/365 (13%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++ +TG+NGKSTV + QM+ G+ +GGN+G P A C+ K + V+
Sbjct: 103 VIGITGSNGKSTVTKLLTQMIADSGMLVAIGGNIGIP----ALDCL-----NEKIEYYVL 153
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SSYQ++ + + VVLN+TPDHL+R+ + + Y +K L+ + +
Sbjct: 154 ELSSYQLDY-SYHLNLITGVVLNITPDHLDRYSSFEYYIHSKLSLYQY--------CQYS 204
Query: 165 NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV--------GVVSQLQLHNMK 216
+L+E + + N+ + G I+ + F G + + + ++
Sbjct: 205 VVNLDEPLIPKQTNVKYFG------INIPKRANDFGTVTCHNICYLLKGNNTLMSVDEVQ 258
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
++G HN N +AAL+ LG I + + ++ +I+ + HR++ V + Q + + +DSK
Sbjct: 259 LIGEHNTKNI-LAALA-LGDQIKLPISSMIQSIKNFKALEHRLEWVIKK-QNIDYYNDSK 315
Query: 277 ATNLEATCTGLMDL--KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRC-VITFGYS 333
ATN +T + L K V++LGG AK + L + +N V+ G S
Sbjct: 316 ATNAISTIIAIQTLMYKHQNIVLILGGIAK------KEDYTLLFKFINKGITGVVLIGQS 369
Query: 334 GVLIWKTLVNNGLSIPCFAVAN-MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 392
+ + N + +A N M++AVN AR M +NG I+LSPGCASFD F NFEHRG
Sbjct: 370 TRQFLQEINTNSI---IYANTNTMQEAVNIARSMISNG-VILLSPGCASFDMFDNFEHRG 425
Query: 393 MVFQE 397
VF++
Sbjct: 426 RVFKD 430
>gi|87199153|ref|YP_496410.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
aromaticivorans DSM 12444]
gi|118595671|sp|Q2G997.1|MURD_NOVAD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|87134834|gb|ABD25576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
aromaticivorans DSM 12444]
Length = 443
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 112/361 (31%), Positives = 170/361 (47%), Gaps = 51/361 (14%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
+++ +TGTNGKST V + G+ A +GGN+G P I P+ V V
Sbjct: 110 RVVGITGTNGKSTTTMLVHHICAAAGLPARLGGNIGLP--------ILGQEPLPEGGVYV 161
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SSYQ+++ C V+ ++NL+PDHL+R+ YA +K LF+ + +
Sbjct: 162 LELSSYQIDLTQSLAC-DVAALINLSPDHLDRYDGFAGYAASKARLFAMQRADQHAVFGC 220
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM----KVMG 219
G++H ++I EA +A+ + V VV LH + G
Sbjct: 221 GDEHT-------------------LEIAREA-SATHDTGFVHVVQPSALHGQLEWPSLQG 260
Query: 220 RHNYHNAAVAALSVLGLDIGVDV--EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
HN NAA+A L I D+ AL S + + PHRM+ V + GV +V+DSKA
Sbjct: 261 PHNLQNAAIAVEIARQLGIAEDIWRSALASFVGL----PHRMERV-AEANGVLFVNDSKA 315
Query: 278 TNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLI 337
TN +T L + +LGG K S+ ++ +H T G +G
Sbjct: 316 TNPASTAPALGAYP--RIHWILGGLPK------SDNLDECAPYFDHVVAAYTIGEAGPRF 367
Query: 338 WKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
+ L +P + DAV A A GD ++LSP CASFD+FR+FE RG F++
Sbjct: 368 AEILEP---VMPVTRSEMLCDAVRQAMEAAQPGDVVMLSPACASFDQFRDFEARGDSFRQ 424
Query: 398 L 398
+
Sbjct: 425 I 425
>gi|357043585|ref|ZP_09105276.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Prevotella
histicola F0411]
gi|355368249|gb|EHG15670.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Prevotella
histicola F0411]
Length = 454
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 107/386 (27%), Positives = 195/386 (50%), Gaps = 36/386 (9%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L+ G ++SE++FA + + K++ +TG+NGK+T + + + + G + + GN+GN
Sbjct: 93 LIAQGTHIISEIEFAGRYT--NSKMICITGSNGKTTTTSLIYHIFKNAGYDVGLAGNIGN 150
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ ++E+SS+Q++ N Y F ++++LN+TPDHL+R+
Sbjct: 151 SL--------ALQVAESPHAYYIIELSSFQLD--NMYDFRANIAILLNITPDHLDRYDYK 200
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+NYA K + + TK + N + +F++ + +P ++ +
Sbjct: 201 FENYADAKMRIIQNQ--TKEDSFIYWNDDPVIRKELEKFDVHAV-CYPFSELKEKGSIGY 257
Query: 199 FEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSVLGLDI-GVDVEALNSTIEILR 253
E + ++ ++ + G+HN +N+ A ++ DI G+ E + ++
Sbjct: 258 IEEGQYTIEQPEPFNMEQEDLSLTGKHNIYNSLAAGIAS---DISGIKKENIRKSLSDFP 314
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
HR++ V + + GV +++DSKATN++A L ++ +++LGG+ K G + N
Sbjct: 315 GVEHRLEKVCK-VAGVQYINDSKATNVDACWYALESMRT-PTILILGGKDK---GNDYNA 369
Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVN-NGLSIPCFAVANMKDAVNHARRMATNGDA 372
+ L++ +CV Y G K N + L IP +MKD V MA GD
Sbjct: 370 IKDLVK----KKCV-GLVYLGADNKKLHENFDTLGIPVRDTHSMKDCVAACAEMAKPGDT 424
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQEL 398
++LSP CASFD F+N E RG F+ L
Sbjct: 425 VLLSPCCASFDLFKNMEDRGEQFKSL 450
>gi|167614190|gb|ABZ89695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
aphidicola]
Length = 438
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 109/386 (28%), Positives = 186/386 (48%), Gaps = 52/386 (13%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++S+++ ++ ++ I+++TGTNGKSTV T V + G + ++GGN+G P
Sbjct: 90 GIEIISDIELFSR--ETTVPIISITGTNGKSTVATIVKNIAKKSGYKVYLGGNIGFP--- 144
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT-VSVVLNLTPDHLERHKT-MKNY 142
AL + K + ++E+SS+Q+E N + + +SVVLN+ DHL+R+ + Y
Sbjct: 145 ------ALDMLEKKADLYILELSSFQLE--NIFSLKSKLSVVLNINEDHLDRYPDGFQQY 196
Query: 143 ALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
K ++ + ++N + F N+H G D++ +S
Sbjct: 197 KKIKLSIYKNSEICLINLREKKYCFKNKHKKYITFGTN--------------DSDYYVSS 242
Query: 199 FEVPAVGVVSQLQLHNMKVMGRH---NYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
+ Q ++ +M H NY NA V+ ++ D + ++
Sbjct: 243 IKDKIFLYYKQKKIFDMSKTSIHEHQNYENALVSLAISDAMNFPRD--KVKYVFSNFKSL 300
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKVLNGQ-ESNG 313
PHR QIVH+ ++W++DSK+TN+ +T L ++ + +LLGG K N Q N
Sbjct: 301 PHRFQIVHKH-NDISWINDSKSTNINSTKIALSNINTKGTIWLLLGGDKKSANFQILKND 359
Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
EKL + FG G+ I K + I N+KDA+ + +GD +
Sbjct: 360 LEKL------KVKIYCFGKDGMNIAKIFQKKSIYI-----ENLKDAMILISKEVMSGDIV 408
Query: 374 VLSPGCASFDEFRNFEHRGMVFQELA 399
+LSPGC+S D+F+NFE RG +F L+
Sbjct: 409 LLSPGCSSKDQFKNFEERGNLFITLS 434
>gi|337285808|ref|YP_004625281.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermodesulfatator
indicus DSM 15286]
gi|335358636|gb|AEH44317.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermodesulfatator
indicus DSM 15286]
Length = 463
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 127/376 (33%), Positives = 192/376 (51%), Gaps = 35/376 (9%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+ EL+ + + KILA+TGTNGK+T +L G + FVGGN G PLSE
Sbjct: 97 VIGELELGYRFLLPGKKILAITGTNGKTTTTAMATDILRLSGKQVFVGGNYGTPLSEFII 156
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ K V+E SS+Q+E + F P V+V+LN+TPDHLER+ K YAL K
Sbjct: 157 NG-------QKADYLVLETSSFQLESIDT-FRPQVAVILNITPDHLERYAGFKEYALAKA 208
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
++ + +LP + L E + + + ++G G E K +SF +
Sbjct: 209 RIYENQTPEDFVILP---EELLEILPTPKSKMFFLGK-KGTN-GAELKGSSFVLHLPSGP 263
Query: 208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLDI---GVDVEALNSTIEILRTPPHRMQIVHR 264
+ L K++G HN N VAAL+ L G+ EA+ S I PHR++ V
Sbjct: 264 EEYSLAGFKLLGEHNRLNFTVAALAARLLGATPQGIK-EAIKSFIGF----PHRLEFVG- 317
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH 324
GV +V+DSKATN++AT L L ++++GG+ K + + L+ +
Sbjct: 318 TFGGVYFVNDSKATNVDATLKALRGLSA-PIILIMGGKHK------GSSYRPLMGEIKRK 370
Query: 325 -RCVITFGYSGVLIWKTLVN-NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASF 382
+ +I G S ++ + L + I V N+++AV A AT GD ++LSP ASF
Sbjct: 371 VKLLILMGESRYVMAEDLRECTDMKI----VENLEEAVAVAISEATLGDTVLLSPAAASF 426
Query: 383 DEFRNFEHRGMVFQEL 398
D+F N++ RG VF+EL
Sbjct: 427 DQFENYQERGDVFKEL 442
>gi|424073657|ref|ZP_17811072.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
syringae pv. avellanae str. ISPaVe037]
gi|407995760|gb|EKG36275.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
syringae pv. avellanae str. ISPaVe037]
Length = 448
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 115/370 (31%), Positives = 180/370 (48%), Gaps = 55/370 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + + +
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKYLAFQFENL-----MSV 265
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
+KV G HN A A LG +G+ +A+ +++ HR Q + R+ GV +
Sbjct: 266 RELKVRGAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL-REHDGVHYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCV 327
+DSKATN+ A + D+ G K V++ GG K + F L P+ H R
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGAD------FSGLRAPVARHCRAA 375
Query: 328 ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ G LI + L G ++P V ++ AV H+ ++A GDA++LSP CAS D F+N
Sbjct: 376 VLLGRDAELIAQAL---GDAVPLLRVDTVQAAVEHSAKLAQRGDAVLLSPACASLDMFKN 432
Query: 388 FEHRGMVFQE 397
+E RG VF +
Sbjct: 433 YEERGRVFAQ 442
>gi|332878268|ref|ZP_08445994.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. oral taxon 329 str. F0087]
gi|332683719|gb|EGJ56590.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. oral taxon 329 str. F0087]
Length = 444
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 105/378 (27%), Positives = 193/378 (51%), Gaps = 37/378 (9%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
++SE++FA+Q +I +A+TG+NGK+T + G+E +GGN+G +E
Sbjct: 89 IISEIEFASQYTHSTI--VAITGSNGKTTTTLLTHHIFKQAGLEVGLGGNIGYSFAELVA 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTK 146
H S+ P + V+E+SS+Q++ ++F P ++V+LN+TPDHL+R+ +NY +K
Sbjct: 147 H-----SNPPYY---VLEISSFQLD-GIEHFAPHIAVLLNITPDHLDRYDYKFENYIASK 197
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF------E 200
+ + + + +N+ + H IG I+ E +F
Sbjct: 198 FRIAMNQTANDYFIYDADDPVINDWLTTHPLKPKCIG----FSIEKELSEGAFLKDNKIH 253
Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
+ + + + + + G+HN N AA++ ++I +L +++ + HR++
Sbjct: 254 IMLENQTTVIDVEEISLKGKHNIKNTMAAAVAARLVNI--RNASLRESLKGFQGAAHRLE 311
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP 320
V + ++GVT+++DSKATN+ + L +K V ++GGQ K N + L+ P
Sbjct: 312 EV-KVVEGVTYINDSKATNVNSVYFALDTIKT-PIVWIVGGQDK------GNDYNSLL-P 362
Query: 321 LNHHR--CVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
H + ++ G I ++ N + +M++AV A+R AT GD ++LSP
Sbjct: 363 YVHQKVKAIVCLGVDNTPILQSFYN--VIDNMVETRSMEEAVKMAQRFATAGDTVLLSPA 420
Query: 379 CASFDEFRNFEHRGMVFQ 396
CASFD F+++E RG F+
Sbjct: 421 CASFDLFKSYEDRGDQFK 438
>gi|365121357|ref|ZP_09338348.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Tannerella sp.
6_1_58FAA_CT1]
gi|363645980|gb|EHL85233.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Tannerella sp.
6_1_58FAA_CT1]
Length = 445
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 113/384 (29%), Positives = 196/384 (51%), Gaps = 37/384 (9%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G ++SE++FA + K++ +TG+NGK+T +L + G+ + GN+G L
Sbjct: 85 KEGIPIISEIEFAGRYT--HAKMICITGSNGKTTTTLLTYHILKNAGLNVGLAGNVGKSL 142
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERH-KTMK 140
AL + F V+E+SS+Q++ N Y F ++V+LN+TPDHL+R+ M+
Sbjct: 143 --------ALQVATENFDYYVIELSSFQLD--NMYKFKADIAVLLNITPDHLDRYGYDMQ 192
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF-----PGVKIDTEAK 195
NY K + + + + + + +K H A + F GVK TE
Sbjct: 193 NYINAKFRITQNQTPNDAFIYWNDDPIITKELKAHDLK-ARLYPFSEEKEEGVKAYTENN 251
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
+ P + + ++ + GRHN +N+ A++S LDI E + ++ +
Sbjct: 252 QIVIDAPNDTLT--ITEDDLALQGRHNLYNSMAASISAKVLDIKK--EDIREGLKDFKGV 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
HR++ V R ++GV +++DSKATN+ + L ++ K +++LGG+ K G + + E
Sbjct: 308 EHRLEKVAR-VRGVEFINDSKATNVNSCWYALESMRT-KVILILGGKDK---GNDYSEIE 362
Query: 316 KLI-EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVAN-MKDAVNHARRMATNGDAI 373
+L+ E +N C+ GV K +P A+ MK+AV+ A A G+ +
Sbjct: 363 ELVKEKVNAIICL------GVDNSKLHAFFEGKVPHIEDASSMKEAVDKAFACAQKGETV 416
Query: 374 VLSPGCASFDEFRNFEHRGMVFQE 397
+LSP CASFD F+++E RG F+E
Sbjct: 417 LLSPCCASFDLFKSYEDRGEQFKE 440
>gi|443242723|ref|YP_007375948.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nonlabens
dokdonensis DSW-6]
gi|442800122|gb|AGC75927.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nonlabens
dokdonensis DSW-6]
Length = 453
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 111/385 (28%), Positives = 183/385 (47%), Gaps = 45/385 (11%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+SE++FAA+ KI+AVTG NGK+TV + + + N +E GGN+G ++
Sbjct: 95 GIEVISEIEFAARFTDE--KIIAVTGANGKTTVTSLIDHIFNVANLEHTTGGNIGKSFAQ 152
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYA 143
+ + K ++EVSS+Q++ + F P ++++LN+TPDHL+R+ +NY
Sbjct: 153 QVY--------EGKSTYRLLEVSSFQLDGIST-FKPHIAILLNITPDHLDRYDYKFENYI 203
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI----------GAFP-GVKIDT 192
+K + + + + + EAIK I GA+ +I
Sbjct: 204 ASKMRITMNQDENDFLIYNTDDPAITEAIKNANIKAQLIPFSMENELEKGAYLLNNQIHI 263
Query: 193 EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
+ F +P + + G+HN NA A+ + L I E + ++
Sbjct: 264 NTHNSLFTMPT---------EQLPIKGKHNTANAMAASTTAKLLQI--RKETIRQSLTSF 312
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
HR++ V + I V +++DSKATN+ AT L D V ++GG K N
Sbjct: 313 EGVEHRLENVLK-INKVQYINDSKATNVNATYYAL-DSMEQPTVWIVGGVDK------GN 364
Query: 313 GFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD 371
++ L +N + ++ G I + N +NM+DAV A ++AT GD
Sbjct: 365 NYKDLYSLVNRKVKAIVCLGTDNSKIVEAFGN--CVEQMVETSNMEDAVRVAYKLATAGD 422
Query: 372 AIVLSPGCASFDEFRNFEHRGMVFQ 396
++LSP CASFD F+N+E RG F+
Sbjct: 423 NVLLSPACASFDLFQNYEDRGRQFK 447
>gi|375013443|ref|YP_004990431.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Owenweeksia
hongkongensis DSM 17368]
gi|359349367|gb|AEV33786.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Owenweeksia
hongkongensis DSM 17368]
Length = 447
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 107/398 (26%), Positives = 190/398 (47%), Gaps = 49/398 (12%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + + ++G V+SE++F + KI+A+TG+NGK+T +L G+
Sbjct: 78 KAAVMKAIREAGIEVISEIEFGYRYCKG--KIIAITGSNGKTTTTLLTYDILKKAGVSVA 135
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHL 133
+GGN+GN A ++ V+E+SS+Q++ N F P ++++ N+TPDHL
Sbjct: 136 LGGNVGNSF--------AASVAESDHDYYVLEISSFQLDDINS-FKPHIAILCNITPDHL 186
Query: 134 ERHK-TMKNYALTKCHLFSHMVNTKLGL--------LPFGNQH------LNEAIKGHRFN 178
+R+ M+NYA +K + + T + L + QH L ++
Sbjct: 187 DRYDYKMENYAASKFAITKYQDETDFFIYNKDDAETLKYMPQHTIKSKPLAITLQNENTE 246
Query: 179 LAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI 238
AW+ + I + Q+ ++ + + G+HN +N+ + L+ L
Sbjct: 247 GAWLDETNTIHI------------TINNQEQMNINELALQGKHNTYNSMASGLASKLL-- 292
Query: 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL 298
G+ EA+ ++ + HR++ V + + G+ +++DSKATN+ +T L ++ H+ I
Sbjct: 293 GIRKEAIRESLAGFESIEHRLEPVLQ-VYGMQFINDSKATNVNSTWYALDNM--HEPTIW 349
Query: 299 LGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKD 358
+ G V G + + L+E + +I G + + G A+M +
Sbjct: 350 IAG--GVDKGNDYSQLFGLVEK--KVKAIICLGVDNSKLHQEF--EGKVDLIIDAADMDE 403
Query: 359 AVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
AV A +M GD I+LSP CASFD F N+E RG F+
Sbjct: 404 AVRMAYKMGEKGDNILLSPACASFDLFENYEDRGRQFK 441
>gi|421107819|ref|ZP_15568368.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
kirschneri str. H2]
gi|410007101|gb|EKO60814.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
kirschneri str. H2]
Length = 463
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 121/398 (30%), Positives = 191/398 (47%), Gaps = 60/398 (15%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE+D KI+ +TGT+GKST + + +L + GGNLG P +
Sbjct: 89 VISEIDLGRYFFKG--KIIGITGTDGKSTTTSLIAHLLKQGFPDLKEGGNLGIPFTSFCK 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
I+L AV+E+SSYQ+E + VSV LNL DHLERHKTM+NY K
Sbjct: 147 ESISL---------AVLELSSYQLEDSSPLHL-NVSVFLNLASDHLERHKTMENYFQAKL 196
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAI---KGHRFNLAWIGAFPGVK--IDTEA---KTASF 199
+ + + N+ L+ ++ + E I ++ L G PG +D + KT+ F
Sbjct: 197 KI-ADLSNSNHSLIV--SEKIKERILNSTSYQCKLLSFGKTPGSNAFLDESSLKIKTSKF 253
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ +S+ L G HN N A + L+ +IG E++ + I + R PHR
Sbjct: 254 ----IYDISKFYLP-----GSHNRENLAASILA--AEEIGEKPESIQTRIPLFRGLPHRF 302
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAKVLNGQESNGFEKLI 318
QI + G+++++DSK+TNL + G+ K + ++LGG+ K + + F LI
Sbjct: 303 QIAGEKL-GISFINDSKSTNLHSMLAGMATWKNLDQTCLILGGRPKQEDPKPLYNF--LI 359
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR--MATNGD----- 371
+ + CV+ FG + +W+ + N + V N+ DA ++ + T D
Sbjct: 360 KGIG---CVVLFGEARS-VWENGIRNIIGEKLHCVENLNDAFEIFKKGYILTAADSGKDS 415
Query: 372 -----------AIVLSPGCASFDEFRNFEHRGMVFQEL 398
+ V SP CASFD+++NFE RG F L
Sbjct: 416 IFRLSHGISISSFVFSPACASFDQYKNFEERGNHFLSL 453
>gi|398866244|ref|ZP_10621744.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM78]
gi|398241581|gb|EJN27231.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM78]
Length = 448
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 120/370 (32%), Positives = 181/370 (48%), Gaps = 47/370 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLGDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNL--AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L AF G++ + K +FE + + + +KV
Sbjct: 221 ---SRPLMGEGQPCWTFGLNKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVRELKVR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S + HR Q V RD+ GV + +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSALRNFAGLEHRCQWV-RDLDGVGYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D+ G K V++ GG K G E F+ L +P+ + R VI G
Sbjct: 329 NVGAALAAIEGLGADIDG-KIVLIAGGDGK---GAE---FKDLRDPVAANCRAVILMGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
I + + G ++P ++ +AV R A GD ++LSP CASFD F+N+E RG
Sbjct: 382 SDKIGQAI---GDAVPLIRAGSLVEAVEQCRAAAQTGDVVLLSPACASFDMFKNYEDRGH 438
Query: 394 VF----QELA 399
F +ELA
Sbjct: 439 QFVQAVEELA 448
>gi|345017940|ref|YP_004820293.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermoanaerobacter
wiegelii Rt8.B1]
gi|344033283|gb|AEM79009.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 454
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 120/382 (31%), Positives = 195/382 (51%), Gaps = 39/382 (10%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
V+ E++FA + I A+TGTNGK+T + +G+M + G + +V GN+G PL A
Sbjct: 94 EVLGEVEFAYRF--SKAPIYAITGTNGKTTTTSLLGEMFKNAGRKVYVAGNIGYPLIYAV 151
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ +++ F VA E+SS+Q+E K F P +S ++N+TPDHL RHKT ++Y K
Sbjct: 152 -----MEATEGDFIVA--EISSFQLETI-KEFKPKISCIINITPDHLNRHKTFESYRDIK 203
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT-----EAKTASFEV 201
+F + + +L F ++ + N A FP + + K S +
Sbjct: 204 GRIFENQRGDEYTVLNF-----DDPVTWSLKNKAKCRVFPFSRKSSLENGAYVKDGSIYI 258
Query: 202 PAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
G ++ + + + G HN NA +AA SV L G+ + +T++ + HR++
Sbjct: 259 SVNGNAKKIIDIEEIYIPGEHNLENA-LAASSVAYLS-GISANVIANTLKTFKGVEHRIE 316
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP 320
V +I GV + +DSK TN +A+ + LK V++ GG K G E F++ ++
Sbjct: 317 FVD-EINGVKFYNDSKGTNPDASIKAIQALK-TPIVLIAGGYDK---GSE---FDEFVKA 368
Query: 321 LNHH-RCVITFGYSGVLIWKTLVNNGLSIP----CFAVANMKDAVNHARRMATNGDAIVL 375
N + +I G + I T S P FA +++AV A A GD+++L
Sbjct: 369 FNGKVKKLILIGQTAKKIRDTA--RKYSYPEDDILFA-GTLEEAVKKAYESAKEGDSVLL 425
Query: 376 SPGCASFDEFRNFEHRGMVFQE 397
SP CAS+D FRNFE RG +F++
Sbjct: 426 SPACASWDMFRNFEERGRIFKK 447
>gi|417917769|ref|ZP_12561328.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
parasanguinis SK236]
gi|342830406|gb|EGU64745.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
parasanguinis SK236]
Length = 449
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 187/378 (49%), Gaps = 33/378 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LEKGIPVLTEVELAYLI--SDAPIIGITGSNGKTTTTTMIGEVLTAAGQGGLLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + + V V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASQVA-------QTATEKDVLVMELSSFQL-MGIEAFHPEIAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K +L +M + +L F NQ L + + K + + G + E
Sbjct: 203 YVAAKWNLQKNMTEKDVIVLNF-NQDLAKELATKTKARVLPFSTVEKVDGAYL--EDGLL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F+ V ++ + V G HN N A+A ++V + GV+ E + T+ H
Sbjct: 260 KFKGEVV-----MRADELGVPGSHNVEN-ALATIAVAKVR-GVENEVIKETLSAFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R+Q V +IQGV + +DSK+TN+ AT L K +++ GG + N F++L
Sbjct: 313 RLQYVD-EIQGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDEL 365
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
+ + + ++ G S + + G +P A++ DA A +A+ GD ++LSP
Sbjct: 366 VPHITGLKEMVILGESAPRVKRAADKAG--VPYVDAADVADATKKAFDLASPGDVVLLSP 423
Query: 378 GCASFDEFRNFEHRGMVF 395
AS+D + NFE RG F
Sbjct: 424 ANASWDMYPNFEVRGDEF 441
>gi|418694755|ref|ZP_13255788.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
kirschneri str. H1]
gi|409957452|gb|EKO16360.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
kirschneri str. H1]
Length = 463
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 121/398 (30%), Positives = 191/398 (47%), Gaps = 60/398 (15%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE+D KI+ +TGT+GKST + + +L + GGNLG P +
Sbjct: 89 VISEIDLGRYFFKG--KIIGITGTDGKSTTTSLIAHLLKQGFPDLKEGGNLGIPFTSFCK 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
I+L AV+E+SSYQ+E + VSV LNL DHLERHKTM+NY K
Sbjct: 147 ESISL---------AVLELSSYQLEDSSPLHL-NVSVFLNLASDHLERHKTMENYFQAKL 196
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAI---KGHRFNLAWIGAFPGVK--IDTEA---KTASF 199
+ + + N+ L+ ++ + E I ++ L G PG +D + KT+ F
Sbjct: 197 KI-ADLSNSNHSLIV--SEKIKERILNSTSYQCKLLSFGKTPGSNAFLDESSLKIKTSKF 253
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ +S+ L G HN N A + L+ +IG E++ + I + R PHR
Sbjct: 254 ----IYDISKFYLP-----GSHNRENLAASILA--AEEIGEKPESIQTRIPLFRGLPHRF 302
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAKVLNGQESNGFEKLI 318
QI + G+++++DSK+TNL + G+ K + ++LGG+ K + + F LI
Sbjct: 303 QIAGEKL-GISFINDSKSTNLHSMLAGMATWKNLDQTCLILGGRPKQEDPKPLYNF--LI 359
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR--MATNGD----- 371
+ + CV+ FG + +W+ + N + V N+ DA ++ + T D
Sbjct: 360 KGIG---CVVLFGEARS-VWENGIRNIIGEKLHCVENLNDAFEIFKKGYILTAADSGKDS 415
Query: 372 -----------AIVLSPGCASFDEFRNFEHRGMVFQEL 398
+ V SP CASFD+++NFE RG F L
Sbjct: 416 IFRLSHGISISSFVFSPACASFDQYKNFEERGNHFLSL 453
>gi|340783400|ref|YP_004750007.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
caldus SM-1]
gi|340557551|gb|AEK59305.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
caldus SM-1]
Length = 454
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 116/365 (31%), Positives = 174/365 (47%), Gaps = 48/365 (13%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSS-KPKFQVAV 103
I A+TG+NGKSTV T +G+M G VGGNLG P + LP + P+ ++ V
Sbjct: 111 IAAITGSNGKSTVTTLLGEMAKAAGRRVAVGGNLGTPALD------LLPEAGAPEPELYV 164
Query: 104 VEVSSYQMEIPNKYFC----PTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLG 159
+E+SS+Q+ ++C P V+ +LNL+PDHL+ H M+ Y K +F M
Sbjct: 165 LELSSFQL-----HYCHALRPRVAAILNLSPDHLDWHGDMEAYLAAKARIFRTMGEGDTL 219
Query: 160 LLPFGNQHLNE-------AIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
+L + L ++ RF G P ++DT A + P+ + + L
Sbjct: 220 VLNGEDPALQSLPAKAPAGVEIRRF-----GHTP--QLDTWADDLALHWPS---AAPMPL 269
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
++ + G+HN N V A +++ + + A+ R PHR+Q V R + GV +
Sbjct: 270 ADIHLPGKHNGEN--VLAAALMANALNLPETAIRQAAADFRGLPHRLQWVAR-VGGVDYY 326
Query: 273 DDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGY 332
DDSK TNL A+ + L G V++LGG AK + L E L R + G
Sbjct: 327 DDSKGTNLGASLRAIQALPG-PLVLILGGDAKGAD------LSPLREALRGQRGAVLLGK 379
Query: 333 SGVLIWKTLVNNGLSIPCFAVAN--MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEH 390
++ L S+P + M AV A MA GD ++LSP CAS D FR++
Sbjct: 380 DAAILEAILAG---SLPTLRIGEGGMSRAVRAAAAMAQPGDQVLLSPACASLDMFRDYRD 436
Query: 391 RGMVF 395
RG F
Sbjct: 437 RGRQF 441
>gi|119478638|ref|ZP_01618541.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine gamma
proteobacterium HTCC2143]
gi|119448415|gb|EAW29666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine gamma
proteobacterium HTCC2143]
Length = 453
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 111/387 (28%), Positives = 178/387 (45%), Gaps = 31/387 (8%)
Query: 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
L +A + SG V ++D + I A+TG+NGK+TV T VG M G A
Sbjct: 81 LDQPAIARAIDSGIIVCGDIDLFCE--EAKAPIAAITGSNGKTTVTTLVGLMAERCGRSA 138
Query: 73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
VGGN+G P + +P+ + V+E+SS+Q+E + + VLN++ DH
Sbjct: 139 AVGGNIGVPALDLLL--------EPEPDMYVLELSSFQLERAD-VLGFEAATVLNISADH 189
Query: 133 LERHKTMKNYALTKCHLFSHMVNTKLGLL-PFGNQHLNEAIKGHRFNLAWIGAFPGVKID 191
++R+ + Y K +F+H + P + E + F L PG+K
Sbjct: 190 MDRYPDLSTYRRAKYRIFNHCKKKIINRADPLAAPYCGEDLDVLSFGLDR----PGLKGF 245
Query: 192 TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
E A + + +K++GRHN NA A G +G+++ + +
Sbjct: 246 GLIDVNGVEYLAYQTEPLMAVGALKMVGRHNIENALAALAL--GFAMGLELSLMTEVLSE 303
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG--HKCVILLGGQAKVLNGQ 309
HR Q+V + Q + + +DSK TN+ A + L K +++ GG+ K +
Sbjct: 304 FSGLDHRCQLVG-EYQQIKYYNDSKGTNVGAAIAAIEGLAAVAKKVILIAGGEGKGAD-- 360
Query: 310 ESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMAT 368
F L+ L R ++ G + + K G I ++M+ AV A +A
Sbjct: 361 ----FSPLLPVLKQFARAIVVIGEASEQLLKLC---GDEIIALRASSMQQAVEKAAMLAV 413
Query: 369 NGDAIVLSPGCASFDEFRNFEHRGMVF 395
+GDA++LSP CASFD F N+EHRG VF
Sbjct: 414 SGDAVLLSPACASFDMFENYEHRGDVF 440
>gi|77460896|ref|YP_350403.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
fluorescens Pf0-1]
gi|118595675|sp|Q3K742.1|MURD_PSEPF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|77384899|gb|ABA76412.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
fluorescens Pf0-1]
Length = 448
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 117/362 (32%), Positives = 175/362 (48%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGAKQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L+ AF G++ + K +FE + + + +K+
Sbjct: 221 T---RPLMGEGQPCWTFGLSKPDFKAF-GLREENGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ + HR Q V RD+ GV + +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLVALRTFAGLEHRCQWV-RDLDGVGYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL-NHHRCVITFGYS 333
N+ A + D+ G K V++ GG K G E F+ L +P+ H R VI G
Sbjct: 329 NVGAALAAIEGLGADIDG-KVVLIAGGDGK---GAE---FKDLRDPVATHCRAVILMGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
I + + G ++P + DAV R A GD ++LSP CASFD F N+E RG
Sbjct: 382 SDKIGEAI---GDAVPLIRATTLVDAVAQCRAAAQPGDVVLLSPACASFDMFNNYEDRGH 438
Query: 394 VF 395
F
Sbjct: 439 QF 440
>gi|157373549|ref|YP_001472149.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
sediminis HAW-EB3]
gi|157315923|gb|ABV35021.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
sediminis HAW-EB3]
Length = 443
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 113/377 (29%), Positives = 182/377 (48%), Gaps = 54/377 (14%)
Query: 34 FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALP 93
FA V R ++ +TG+NGKSTV T V +M GI VGGN+G P+ L
Sbjct: 100 FARAVKERDACVIGITGSNGKSTVTTLVAEMAKAAGINYAVGGNIGIPV---------LD 150
Query: 94 SSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHM 153
+ ++ V+E+SS+Q+E + C + + LN++ DH++R+ ++ Y K L+S
Sbjct: 151 LLQSDIELYVLELSSFQLETTHSLNCISAT-CLNISEDHMDRYSDIEAYRQAKLRLYSQ- 208
Query: 154 VNTKLGLLPFGNQ--HLNEAIKGHRFNLA------WIGAFPGVKIDTEAKTASFEVPAVG 205
T+ L ++ + + + F L+ W GV E K G
Sbjct: 209 --TRFALFNREDELTKPKDPMNQNSFGLSLPDNDEW-----GV---CEGKIVH------G 252
Query: 206 VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ-IVHR 264
V + L ++ ++G HN+ N +AA++ L G++ A+ HR + +V+R
Sbjct: 253 SVEVISLQDVALVGSHNHAN-LIAAMA-LAYQAGIEKAAMVEVASSFTGLEHRFEMVVNR 310
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKVLNGQESNGFEKLIEPLN 322
+ GV +++DSKATN+ AT + + H +++ GG K + F+ L+ L
Sbjct: 311 N--GVAYINDSKATNVGATVAAIEGISEHLGDIILIAGGDGKGAD------FKPLVPVLK 362
Query: 323 HHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASF 382
+IT G G I LS V +M DAVN A ++A GD ++LSP CAS
Sbjct: 363 AVSHLITLGKDGDKIA------ALSDSSIRVDSMADAVNKAAQLAIAGDIVLLSPACASL 416
Query: 383 DEFRNFEHRGMVFQELA 399
D ++NF RG F+ LA
Sbjct: 417 DMYKNFMERGDDFRRLA 433
>gi|386393822|ref|ZP_10078603.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio sp.
U5L]
gi|385734700|gb|EIG54898.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio sp.
U5L]
Length = 442
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 115/374 (30%), Positives = 167/374 (44%), Gaps = 46/374 (12%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G +V+SEL+ A+ + I+AVTG+NGK+T V + +L G + F GGN+G PLSE
Sbjct: 99 GAQVVSELELASWFT--AEPIVAVTGSNGKTTTVMLISHLLEAAGRKVFTGGNIGTPLSE 156
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
+ P V V+EVSS+Q+++ + F P V V+LN +P+HL+ H ++ Y
Sbjct: 157 YVL------AGDPA-DVVVLEVSSFQLQL-VRTFRPRVGVLLNFSPNHLDWHADLEEYLS 208
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K +LF L L+P + L R + W A + F P
Sbjct: 209 AKLNLFRAQRPGDLALVPEELRGLLSGRTLSRGEVVWF-----------APSGRFHCP-- 255
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
++ G HN N A L+ GV E + E PHR+QI+
Sbjct: 256 -----------RLAGLHNRQNMEAAFLAA--QPFGVTEEMAKAAFESFAPAPHRLQIIG- 301
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH 324
+ +GV +VDDSKAT + A L +L GG V G + L++
Sbjct: 302 EKRGVLFVDDSKATTVAAMEAALKSFD-RPVRLLCGG---VWKGGDLAALLPLLK--EKV 355
Query: 325 RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 384
V FG S + +P F K AV A GD I+LSP ASFD
Sbjct: 356 ASVGLFGASREIFEAAWAGQ---VPLFYEPTQKAAVTRLFAEAVPGDVILLSPATASFDL 412
Query: 385 FRNFEHRGMVFQEL 398
+ +++ RG FQE+
Sbjct: 413 YGSYKARGRDFQEI 426
>gi|398889455|ref|ZP_10643298.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM55]
gi|398189577|gb|EJM76851.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM55]
Length = 448
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 114/361 (31%), Positives = 176/361 (48%), Gaps = 41/361 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGAKQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L AF G++ + K +FE + + + +K+
Sbjct: 221 T---RPLIGEGQPCWTFGLTKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S++ HR Q V RD+ GV + +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSSLRTFAGLEHRCQWV-RDLDGVGYYNDSKAT 328
Query: 279 NLEATCTGLMDLKGH---KCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSG 334
N+ A + L K V++ GG K G E F+ L +P+ + R V+ G
Sbjct: 329 NVGAALAAIEGLGADIVGKVVLIAGGDGK---GAE---FKDLRDPVAANCRAVVLMGRDS 382
Query: 335 VLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMV 394
I + + G ++P ++ +AV R A GD ++LSP CASFD F+N+E RG
Sbjct: 383 DKIGEAI---GDAVPLIRAGSLIEAVEQCRAAAQPGDVVLLSPACASFDMFKNYEDRGHQ 439
Query: 395 F 395
F
Sbjct: 440 F 440
>gi|392540297|ref|ZP_10287434.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
piscicida JCM 20779]
Length = 440
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 114/385 (29%), Positives = 187/385 (48%), Gaps = 41/385 (10%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+A + G V+ +++ A++ R ++AVTG+NGKSTVVT ++L G++ +GGN
Sbjct: 88 VAAAIAEGVEVIGDIELFARLNTR--PVIAVTGSNGKSTVVTLATEVLKAAGLKVGLGGN 145
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G + L + V V+E+SS+Q+E + C + +++LN+T DH++R+
Sbjct: 146 IGTSV---------LSLLEQPHDVYVLELSSFQLETTHSLACLS-AMILNITEDHMDRYP 195
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI-GAFPGVKIDTEAKT 196
+ Y K ++ H+ + H A G +++ G F + ID E
Sbjct: 196 DFQAYIEAKQRIYQHVEHIVFN----AEDHYTFAQHGQGSSVSLTEGDFHLMTIDGEPHF 251
Query: 197 ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
A + P L + + ++GRHN NA + + + +A S P
Sbjct: 252 AHKQTPL------LPVKTLAMVGRHNQFNALAVLALLAPMQL--PKQAFASAFASFTGLP 303
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL-KGHKCVILL-GGQAKVLNGQESNGF 314
HR Q+V D+ GV + +DSKATN+ +T + L G K +IL+ GG AK +
Sbjct: 304 HRCQLV-ADVAGVRYFNDSKATNVGSTVAAIDSLASGRKNIILIVGGDAKGAD------L 356
Query: 315 EKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
L PL H + + FG G L N+ V N+++AV A+ +ATNGD +
Sbjct: 357 SPLKTPLTTHCKALFCFGQDGAQFMPLLRNS------HQVNNLEEAVLAAKTIATNGDIV 410
Query: 374 VLSPGCASFDEFRNFEHRGMVFQEL 398
+L+P CAS D + N+ RG F L
Sbjct: 411 LLAPACASIDMYPNYMARGDEFVRL 435
>gi|398993485|ref|ZP_10696434.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM21]
gi|398134671|gb|EJM23812.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM21]
Length = 448
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 119/370 (32%), Positives = 183/370 (49%), Gaps = 47/370 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDIELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLMGEGQPCWTFGLGKPDFKAF-GIREEEGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ + + HR Q V RD+ GV + +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLTALRSFAGLEHRCQWV-RDLDGVGYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D++G K V++ GG K G E F L +P+ + R VI G
Sbjct: 329 NVGAALAAIEGLGADIEG-KIVLIAGGDGK---GAE---FNDLRDPVAANCRAVILMGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
I + + G ++P V+++ +AV R A GD ++LSP CASFD F+N+E RG
Sbjct: 382 SDKIGEAI---GDAVPLIRVSSLVEAVAKCRTAAEPGDVVLLSPACASFDMFKNYEDRGH 438
Query: 394 VF----QELA 399
F +ELA
Sbjct: 439 QFVQAVEELA 448
>gi|424069276|ref|ZP_17806723.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
syringae pv. avellanae str. ISPaVe013]
gi|407994999|gb|EKG35548.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
syringae pv. avellanae str. ISPaVe013]
Length = 448
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 114/370 (30%), Positives = 180/370 (48%), Gaps = 55/370 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + + +
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKYLAFQFENL-----MSV 265
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
+KV G HN A A LG +G+ +A+ +++ HR Q + R+ G+ +
Sbjct: 266 RELKVRGAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL-REHDGIHYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCV 327
+DSKATN+ A + D+ G K V++ GG K + F L P+ H R
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGAD------FSGLRAPVARHCRAA 375
Query: 328 ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ G LI + L G ++P V ++ AV H+ ++A GDA++LSP CAS D F+N
Sbjct: 376 VLLGRDAELIAQAL---GDAVPLLRVDTVQAAVEHSAKLAQRGDAVLLSPACASLDMFKN 432
Query: 388 FEHRGMVFQE 397
+E RG VF +
Sbjct: 433 YEERGRVFAQ 442
>gi|381187413|ref|ZP_09894977.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacterium
frigoris PS1]
gi|379650541|gb|EIA09112.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacterium
frigoris PS1]
Length = 443
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 113/388 (29%), Positives = 192/388 (49%), Gaps = 27/388 (6%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L++ G V+SE++FAA R+I I +TG+NGK+T V +L G+
Sbjct: 74 KAPIVKKLIERGIPVISEIEFAAP-FTRAITI-GITGSNGKTTTTMLVYHLLKSAGLNVG 131
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHL 133
+GGN+G ++ ++ KF V+E+SS+Q++ Y P ++++ N++PDHL
Sbjct: 132 LGGNIGKSFAQQV--------AEDKFDSYVLELSSFQLDGIVDY-KPHIAIITNISPDHL 182
Query: 134 ERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT 192
+R+ +NY +K + + + ++ + E +K + I F K
Sbjct: 183 DRYDYKYENYIDSKFRITMNQTEDDYLIYDADDEAIAEWLKNNTTKAKLI-PFSLTKTFN 241
Query: 193 EA---KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
E K + EV +++ ++ + G+HN NA +AA SV L + + + ++
Sbjct: 242 EGAFIKNNNMEVIINQDEFKMETESIALEGKHNMKNA-MAATSVAKL-MQIRKATIRESL 299
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
+ HR++ V + IQ V +++DSKATN+ AT L D V ++GG K G
Sbjct: 300 SNFQGVEHRLEKVLK-IQNVQYINDSKATNVNATFFAL-DSMNSPTVWIVGGVDK---GN 354
Query: 310 ESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN 369
+ N L+ + ++ G I N + V+NM DAV A+R+
Sbjct: 355 DYNELMSLVRE--KVKAIVCLGVDNKKIIDAFGN--VVDMMIEVSNMNDAVRMAQRLTEK 410
Query: 370 GDAIVLSPGCASFDEFRNFEHRGMVFQE 397
GD ++LSP CASFD F N+E RG F++
Sbjct: 411 GDTVLLSPACASFDLFENYEDRGNQFKQ 438
>gi|322374681|ref|ZP_08049195.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
sp. C300]
gi|321280181|gb|EFX57220.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
sp. C300]
Length = 450
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 108/377 (28%), Positives = 184/377 (48%), Gaps = 31/377 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G +V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIQVLTEVELAYLI--SDAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ + M +L F NQ L + + + + K+D E
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKEL-ASKTQATVVPFSTQEKVDGAYLEDGQLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F V S++ V G HN N A+AA++V L GVD + + T+ HR
Sbjct: 261 FRGEVVMAASEI-----GVPGSHNVEN-ALAAIAVAKLR-GVDNQTIKETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q V +IQGV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQFVD-EIQGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
+ + ++ G S + + G++ ++ DA A +AT GD ++LSP
Sbjct: 367 PDITGLKKMVILGQSAERVKRAAEKAGVT--YVDATDIADATRKAYELATQGDVVLLSPA 424
Query: 379 CASFDEFRNFEHRGMVF 395
AS+D + NFE RG +F
Sbjct: 425 NASWDMYANFEVRGDLF 441
>gi|302185271|ref|ZP_07261944.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. syringae 642]
Length = 448
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 115/370 (31%), Positives = 180/370 (48%), Gaps = 55/370 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP---------ALDLLSDDIELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + + +
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKYLAFQFENL-----MSV 265
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
+KV G HN A A LG +G+ +A+ +++ HR Q + R+ GV +
Sbjct: 266 RELKVRGAHN--QANALAALALGHAVGLPFDAMLASLRQFTGLEHRCQWL-REHDGVHYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCV 327
+DSKATN+ A + D+ G K V++ GG K + F L P+ H R
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGAD------FSGLRAPVAKHCRAA 375
Query: 328 ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ G LI + L G ++P V ++ AV H+ ++A GDA++LSP CAS D F+N
Sbjct: 376 VVLGRDAELIAQAL---GDAVPLVRVDTVQAAVEHSAKLAQRGDAVLLSPACASLDMFKN 432
Query: 388 FEHRGMVFQE 397
+E RG VF +
Sbjct: 433 YEERGRVFAQ 442
>gi|110801958|ref|YP_699716.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
perfringens SM101]
gi|118595651|sp|Q0SQ91.1|MURD_CLOPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|110682459|gb|ABG85829.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
perfringens SM101]
Length = 458
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 111/371 (29%), Positives = 186/371 (50%), Gaps = 50/371 (13%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K+ VTG++GK+T T V ++L+ G + + GGN+G PL F I + K V
Sbjct: 118 KVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPL----FSNIEEIKEEDK---VV 170
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+ + V++V N+TP+HL+ HK M+ Y K ++F + L ++
Sbjct: 171 LELSSFQLMTMDVEI--DVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLVIND 228
Query: 164 GNQ---HLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ--LQLHNMKVM 218
N+ +L++ KG + F K TE + A ++ + V + + ++ +
Sbjct: 229 ENEITKNLDKEAKGK------VVRFSSKK--TEGEDAYYKDGKLYVHGKEVCKKDDIIIK 280
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN N A L+V V +E++ E HR + + R++ GV + +DS A+
Sbjct: 281 GMHNVENYLAAFLAVYD---EVSIESMKKIAETFGGVHHRCEFI-REVDGVKYYNDSIAS 336
Query: 279 NLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI--EPLNHH-----RCVITFG 331
T GL K VILL G G++K + EPL + + ++ FG
Sbjct: 337 TPTRTLAGLKAF--EKPVILLAG-----------GYDKHVPFEPLAYEGYEKIKAIVLFG 383
Query: 332 YSGVLI---WKTLVNN-GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ I +K L G+ +P ++ ++++ V+ A+ +A NGD I LSP CASFD F+N
Sbjct: 384 VTKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVSIAKSIAENGDIITLSPACASFDMFKN 443
Query: 388 FEHRGMVFQEL 398
FE RG F+E+
Sbjct: 444 FEVRGDKFKEI 454
>gi|78042912|ref|YP_360890.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Carboxydothermus hydrogenoformans Z-2901]
gi|122063239|sp|Q3AAE4.1|MURD_CARHZ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|77995027|gb|ABB13926.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carboxydothermus
hydrogenoformans Z-2901]
Length = 451
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 116/402 (28%), Positives = 196/402 (48%), Gaps = 25/402 (6%)
Query: 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFV 61
W L + L +A L+ G V+ E++ A + + I+AVTGTNGK+T +++
Sbjct: 69 WELLVVSPGVPLTEEPIAYSLKEGIPVLGEIELAYKEL--KAPIIAVTGTNGKTTTTSWI 126
Query: 62 GQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT 121
G++L G + + GN+G PL EA + ++ +EVSS+Q+E K F P
Sbjct: 127 GEVLKIAGFKTLIAGNIGYPLIEAV---------EEEWDAVSLEVSSFQLETI-KSFKPK 176
Query: 122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAW 181
V+V+LNLTPDHL+RHKT++ Y K +F + T + +L + + + + + +
Sbjct: 177 VAVLLNLTPDHLDRHKTLEGYLEAKARIFINQDRTDVTVLNYDDPRIRSLGRKTPGRVFY 236
Query: 182 IGAFPGVKIDTEAKTASFEVPAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240
++ K V ++GV + + + N+ + G HN NA + GV
Sbjct: 237 FSQKEELEEGVFVKKGKIVVRSLGVEEEIIDIENLPLPGPHNLENALATVAACWSF--GV 294
Query: 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG 300
+ + + + HR++ V +I GV +V+DSK TN ++T L + V++ G
Sbjct: 295 SGKNIERGLRNFQGVAHRLEKVA-EINGVLYVNDSKGTNPDSTIKALNSYE-RPIVLIAG 352
Query: 301 GQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDA 359
G+ K N F +L + R I G + + L G A + +DA
Sbjct: 353 GRNK------GNSFGELAREIREKVRFTILVGECREELKEALEMVGYDKYVVA-ESFEDA 405
Query: 360 VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 401
V A+ +A GD ++LSP AS+D F+N+E RG +F+ L +
Sbjct: 406 VKKAKELARPGDVVLLSPAAASWDMFKNYEERGELFKRLVLN 447
>gi|53711599|ref|YP_097591.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
fragilis YCH46]
gi|60679849|ref|YP_209993.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
fragilis NCTC 9343]
gi|60389935|sp|Q64ZL9.1|MURD_BACFR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|81174945|sp|Q5LIJ5.1|MURD_BACFN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|52214464|dbj|BAD47057.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
fragilis YCH46]
gi|60491283|emb|CAH06031.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Bacteroides fragilis NCTC 9343]
Length = 444
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 110/397 (27%), Positives = 195/397 (49%), Gaps = 59/397 (14%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LREQGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ K V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEEKHDYYVIELSSFQLD--NMYNFRADIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + + P + L++ I+ H +P I E
Sbjct: 190 MQNYINAKFRITQNQTSEDAFIFWNDDPIIKRELDKHGIRAH--------LYPFSAIKEE 241
Query: 194 AKTASFEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNST 248
A E V + ++ + + G+HN +N+ A +S L G+ E +
Sbjct: 242 GSIAYVEDHEVVITEPIAFNMEQEQLALTGQHNLYNSLAAGISANLA---GITKEDIRKA 298
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG 308
+ + HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K
Sbjct: 299 LSDFQGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK---- 352
Query: 309 QESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVN-------NGLSIPCFAV-ANMKDAV 360
N + + IE L +C L++ L N + L +P V MKDAV
Sbjct: 353 --GNDYTE-IEELVREKC-------SALVYLGLHNEKLHEFFDRLGLPVAEVQTGMKDAV 402
Query: 361 NHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
A ++A G+ ++LSP CASFD F+++E RG F++
Sbjct: 403 EAAYKLAKKGETVLLSPCCASFDLFKSYEDRGEQFKK 439
>gi|315225589|ref|ZP_07867398.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Capnocytophaga
ochracea F0287]
gi|420159278|ref|ZP_14666085.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
ochracea str. Holt 25]
gi|314944406|gb|EFS96446.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Capnocytophaga
ochracea F0287]
gi|394762576|gb|EJF44795.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
ochracea str. Holt 25]
Length = 444
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 105/392 (26%), Positives = 193/392 (49%), Gaps = 37/392 (9%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + + + G V+SE++FA+Q I + +TG+NGK+T + G++
Sbjct: 75 KAPIIKKVHEKGIAVISEIEFASQYTDSLI--VGITGSNGKTTTTLLTYHIFKEAGLQVG 132
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHL 133
+GGN+G +E + + P + V +E+SS+Q++ ++F P ++V+LN+TPDHL
Sbjct: 133 LGGNIGYSFAEL------VATENPPYYV--LEISSFQLD-GIEHFAPHIAVLLNITPDHL 183
Query: 134 ERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT 192
+R+ +NY +K + + + ++ + + + H I I+
Sbjct: 184 DRYDYKFENYINSKFRIAMNQTENDYLIYDADDEVITQWLSTHTIKSKLIP----FSIEK 239
Query: 193 EAKTASF------EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
E +F + +++ + + + G+HN N A SV + + +L
Sbjct: 240 ELPQGAFLKDNKIYIMLENQTTEIDVEEISLRGKHNIKNTMAA--SVAARLVNIRNNSLR 297
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVL 306
+++ + PHR++ V + + GVT+V+DSKATN+ + L +K V ++GGQ K
Sbjct: 298 ESLKGFKGAPHRLEEV-KVVDGVTYVNDSKATNVNSVFYALDTIK-TPIVWIVGGQDK-- 353
Query: 307 NGQESNGFEKLIEPLNHH--RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR 364
N + L+ P H R ++ G I ++ N ++ +M +AV A+
Sbjct: 354 ----GNDYNSLL-PYVHEKVRAIVCLGVDNTPIIQSFYNTIGTL--VETRSMDEAVKLAQ 406
Query: 365 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
A GD ++LSP CASFD F+N+E RG +F+
Sbjct: 407 GFAQEGDTVLLSPACASFDLFKNYEERGDLFK 438
>gi|265764983|ref|ZP_06093258.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
2_1_16]
gi|263254367|gb|EEZ25801.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
2_1_16]
Length = 444
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 110/397 (27%), Positives = 195/397 (49%), Gaps = 59/397 (14%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LREQGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ K V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEEKHDYYVIELSSFQLD--NMYNFRADIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + + P + L++ I+ H +P I E
Sbjct: 190 MQNYINAKFRITQNQTSEDAFIFWNDDPIIKRELDKHGIRAH--------LYPFSAIKEE 241
Query: 194 AKTASFEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNST 248
A E V + ++ + + G+HN +N+ A +S L G+ E +
Sbjct: 242 GSIAYVEDHEVVITEPIAFNMEQEQLALTGQHNLYNSLAAGISANLA---GITKEDIRKA 298
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG 308
+ + HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K
Sbjct: 299 LSDFQGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK---- 352
Query: 309 QESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVN-------NGLSIPCFAV-ANMKDAV 360
N + + IE L +C L++ L N + L +P V MKDAV
Sbjct: 353 --GNDYTE-IEELVREKC-------SALVYLGLHNEKLHEFFDRLGLPVAEVQTGMKDAV 402
Query: 361 NHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
A ++A G+ ++LSP CASFD F+++E RG F++
Sbjct: 403 EAAYKLAKKGETVLLSPCCASFDLFKSYEDRGEQFKK 439
>gi|419781108|ref|ZP_14306940.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
oralis SK100]
gi|383184500|gb|EIC77014.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
oralis SK100]
Length = 450
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 183/374 (48%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQRGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F +K A A ++
Sbjct: 203 YVAAKWNIQNKMTADDFLVLNF-NQDLAKELATK--TQATVVPFSTLKKVDGAYLADGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAASEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V +IQGV + +DSK+TN+ AT L K +++ GG + N F++L+ +
Sbjct: 317 VD-EIQGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + L + + ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERV--KLAADKAGVAYVDATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|336407786|ref|ZP_08588282.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
2_1_56FAA]
gi|375356688|ref|YP_005109460.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Bacteroides fragilis 638R]
gi|383116600|ref|ZP_09937348.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
3_2_5]
gi|423248261|ref|ZP_17229277.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis CL03T00C08]
gi|423253210|ref|ZP_17234141.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis CL03T12C07]
gi|423259356|ref|ZP_17240279.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis CL07T00C01]
gi|423263672|ref|ZP_17242675.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis CL07T12C05]
gi|251948126|gb|EES88408.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
3_2_5]
gi|301161369|emb|CBW20909.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Bacteroides fragilis 638R]
gi|335944865|gb|EGN06682.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
2_1_56FAA]
gi|387776936|gb|EIK39036.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis CL07T00C01]
gi|392657110|gb|EIY50747.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis CL03T12C07]
gi|392660368|gb|EIY53982.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis CL03T00C08]
gi|392707094|gb|EIZ00214.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis CL07T12C05]
Length = 444
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 110/397 (27%), Positives = 195/397 (49%), Gaps = 59/397 (14%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LREQGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ K V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEEKHDYYVIELSSFQLD--NMYNFRADIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + + P + L++ I+ H +P I E
Sbjct: 190 MQNYINAKFRITQNQTSEDAFIFWNDDPIIKRELDKHGIRAH--------LYPFSAIKEE 241
Query: 194 AKTASFEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNST 248
A E V + ++ + + G+HN +N+ A +S L G+ E +
Sbjct: 242 GSIAYVEDHEVVITEPIAFNMEQEQLALTGQHNLYNSLAAGISANLA---GITKEDIRKA 298
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG 308
+ + HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K
Sbjct: 299 LSDFQGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK---- 352
Query: 309 QESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVN-------NGLSIPCFAV-ANMKDAV 360
N + + IE L +C L++ L N + L +P V MKDAV
Sbjct: 353 --GNDYTE-IEELVREKC-------SALVYLGLHNEKLHEFFDRLGLPVAEVQTGMKDAV 402
Query: 361 NHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
A ++A G+ ++LSP CASFD F+++E RG F++
Sbjct: 403 EAAYKLAKKGETVLLSPCCASFDLFKSYEDRGEQFKK 439
>gi|337281545|ref|YP_004621016.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
parasanguinis ATCC 15912]
gi|335369138|gb|AEH55088.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
parasanguinis ATCC 15912]
Length = 449
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 188/378 (49%), Gaps = 33/378 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LEKGIPVLTEVELAYLI--SDAPIIGITGSNGKTTTTTMIGEVLTAAGQGGLLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + + +V V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASQVA-------QTATEKEVLVMELSSFQL-MGIEAFHPEIAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K +L +M + +L F NQ L + + K + I G + E
Sbjct: 203 YVAAKWNLQKNMTEKDVIVLNF-NQDLAKELATKTKARVLPFSTIEKVDGAYL--EDGLL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F+ V ++ + V G HN N A+A ++V + V+ E + T+ H
Sbjct: 260 KFKGEVV-----MRADELGVPGSHNVEN-ALATIAVAKVR-SVENEVIKETLSAFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R+Q V +IQGV + +DSK+TN+ AT L +K +++ GG + N F++L
Sbjct: 313 RLQYVD-EIQGVKFYNDSKSTNILATQKALSGFDNNKVILIAGGLDR------GNEFDEL 365
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
+ + + ++ G S + + G +P A++ DA A +A+ GD ++LSP
Sbjct: 366 VPHITGLKEMVILGESAPRVKRAADKAG--VPYVDAADVADATKKAFDLASPGDVVLLSP 423
Query: 378 GCASFDEFRNFEHRGMVF 395
AS+D + NFE RG F
Sbjct: 424 ANASWDMYPNFEVRGDEF 441
>gi|212556524|gb|ACJ28978.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
(UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
(D-glutamic acid adding enzyme) [Shewanella
piezotolerans WP3]
Length = 422
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 116/384 (30%), Positives = 187/384 (48%), Gaps = 55/384 (14%)
Query: 25 GKRVMSELDFAAQVIPRS-IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
G V+ +++ A+ I S +++ +TG+NGKSTV T VG+M G+ +GGN+G P+
Sbjct: 74 GIEVIGDVELFARAIANSPARVIGITGSNGKSTVTTLVGEMAAAAGLSYTLGGNIGIPVL 133
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
+ + PK ++ V+E+SS+Q+E + C + LN++ DH++R+ +++Y
Sbjct: 134 DLLLN--------PK-ELYVLELSSFQLETTHSLNC-IAATCLNISEDHMDRYNDLESYR 183
Query: 144 LTKCHLFSH---MVNTKLGLLPFGNQHLNEAIKGHRFNL------AWIGAFPGVKIDTEA 194
K +L+ ++ + LL N +N+ + F L AW GA +
Sbjct: 184 QAKLNLYDQSKSVLFNREDLLTLPNSPMNQ----NSFGLDAPEVDAWGGAEGNI-----V 234
Query: 195 KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
+ +S +P +S++ L +G HN+ N A +DIG E L +
Sbjct: 235 RGSSVIMP----ISEVAL-----VGSHNHANLIAAMALASSVDIG--REYLVEVAKQFTG 283
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKVLNGQESN 312
HR ++V DI GVT+V+DSKATN+ AT + L H + +++ GG K +
Sbjct: 284 LTHRCEVVA-DIAGVTYVNDSKATNVGATVAAIEGLSEHLGELILIAGGDGKGAD----- 337
Query: 313 GFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 372
F L L VIT G G I L +V M +AV A ++T GD
Sbjct: 338 -FTALATALERVSSVITLGKDGDKIA------ALKEGSQSVKTMAEAVALANEISTAGDI 390
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQ 396
++LSP CAS D + NF RG F+
Sbjct: 391 VILSPACASLDMYPNFMARGDDFR 414
>gi|302344984|ref|YP_003813337.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
melaninogenica ATCC 25845]
gi|302150055|gb|ADK96317.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
melaninogenica ATCC 25845]
Length = 443
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 104/387 (26%), Positives = 196/387 (50%), Gaps = 42/387 (10%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L+ G ++SE++FA + + K++ +TG+NGK+T + + + G +A + GN+GN
Sbjct: 82 LIAQGTHIISEIEFAGRYT--NSKMICITGSNGKTTTTSLIYHIFKDAGYDAGLAGNIGN 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ + ++E+SS+Q++ N Y F ++++LN+TPDHL+R+
Sbjct: 140 SL--------ALQVAEDPHEYYIIELSSFQLD--NMYDFRANIAILLNITPDHLDRYDYK 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+NYA K + + TK + N + +F++ + +P ++ +
Sbjct: 190 FENYADAKMRIIQNQ--TKEDSFIYWNDDPVIKKELEKFDVHAV-CYPFSELKEKGSIGY 246
Query: 199 FEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSVLGLDI-GVDVEALNSTIEILR 253
E + ++ ++ + GRHN +N+ A ++ DI G+ E + ++
Sbjct: 247 IEEGQYTIEQPEPFNMEQEDLSLTGRHNIYNSLAAGIAS---DISGIKKENIRKSLSDFP 303
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
HR++ V + + GV +++DSKATN++A L ++ ++++GG+ K G + N
Sbjct: 304 GVEHRLEKVCK-VAGVQYINDSKATNVDACWYALESMRT-PTILIIGGKDK---GNDYNS 358
Query: 314 FEKLIEPLNHHRC--VITFGYSGVLIWKTLVNN--GLSIPCFAVANMKDAVNHARRMATN 369
+ L++ +C ++ G K L +N L +P +MKD V +A
Sbjct: 359 IKDLVK----QKCAGIVYLGADN----KKLHDNFDDLGLPIRDTHSMKDCVAACAELAKP 410
Query: 370 GDAIVLSPGCASFDEFRNFEHRGMVFQ 396
GD ++LSP CASFD F+N E RG F+
Sbjct: 411 GDTVLLSPCCASFDLFKNMEDRGEQFK 437
>gi|423316134|ref|ZP_17294039.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bergeyella
zoohelcum ATCC 43767]
gi|405584407|gb|EKB58314.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bergeyella
zoohelcum ATCC 43767]
Length = 451
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 107/388 (27%), Positives = 200/388 (51%), Gaps = 28/388 (7%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA L + G R+ SE++FAA+ KI+A+TG+NGK+T + + +L + +
Sbjct: 84 KAGILQKIQAKGIRLSSEIEFAAEFT--DAKIIAITGSNGKTTTTSLIYHILKNAELHVG 141
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDH 132
+GGN+G ++ + + V+EVSS+Q++ I N F P ++++LNL+PDH
Sbjct: 142 LGGNIGTSFAKQV--------ADENYDYFVLEVSSFQLDDIQN--FQPYIALLLNLSPDH 191
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID 191
L+++ ++YAL K + + N + + ++ +E +K + K+D
Sbjct: 192 LDQYNYNYEDYALAKLRITENQKNHQFFIYNHEDEMTHELLKKIEVKAQTLPFSLNEKLD 251
Query: 192 TEAKTASFEVPAVGVVSQ--LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
E A+ + V + + ++++ + ++G+HN N + A S++G + + E L + +
Sbjct: 252 -EGAYATVDKIFVKLEKEFSMKINELPLVGKHNVAN--ILAASMVGKLLHISDENLQNAL 308
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
+ HR+++ +I GV +++DSKATN+ A L + V + GG V G
Sbjct: 309 MTFQAVEHRLELF-AEIDGVKYINDSKATNVNAAYYALESMTS-PTVWIAGG---VDKGN 363
Query: 310 ESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN 369
+ E L++ + VI G I + + I ++ + +++ V A+ +A N
Sbjct: 364 DYTEIEDLVKE--KVKAVICLGKDNEKIIEFFQDKMKLI--YSTSTLEECVKIAKSVAQN 419
Query: 370 GDAIVLSPGCASFDEFRNFEHRGMVFQE 397
GD ++LSP CASFD F N+E RG F++
Sbjct: 420 GDTVLLSPCCASFDLFENYEDRGEKFKK 447
>gi|423269850|ref|ZP_17248822.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis CL05T00C42]
gi|423272696|ref|ZP_17251643.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis CL05T12C13]
gi|392700696|gb|EIY93858.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis CL05T00C42]
gi|392708610|gb|EIZ01716.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis CL05T12C13]
Length = 444
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 110/397 (27%), Positives = 195/397 (49%), Gaps = 59/397 (14%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LREQGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ K V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEEKHDYYVIELSSFQLD--NMYNFRADIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + + P + L++ I+ H +P I E
Sbjct: 190 MQNYINAKFRITQNQTSEDAFIFWNDDPIIKRELDKHGIRAH--------LYPFSAIKEE 241
Query: 194 AKTASFEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNST 248
A E V + ++ + + G+HN +N+ A +S L G+ E +
Sbjct: 242 GSIAYVEDHEVVITEPIAFNMEQEQLALTGQHNLYNSLAAGISANLA---GITKEDIRKA 298
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG 308
+ + HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K
Sbjct: 299 LSDFQGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK---- 352
Query: 309 QESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVN-------NGLSIPCFAV-ANMKDAV 360
N + + IE L +C L++ L N + L +P V MKDAV
Sbjct: 353 --GNDYTE-IEELVREKC-------SALVYLGLHNEKLHEFFDRLGLPVAEVQTGMKDAV 402
Query: 361 NHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
A ++A G+ ++LSP CASFD F+++E RG F++
Sbjct: 403 EAAYKLAKKGETVLLSPCCASFDLFKSYEDRGEQFKK 439
>gi|238019064|ref|ZP_04599490.1| hypothetical protein VEIDISOL_00926 [Veillonella dispar ATCC 17748]
gi|237864319|gb|EEP65609.1| hypothetical protein VEIDISOL_00926 [Veillonella dispar ATCC 17748]
Length = 456
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 121/378 (32%), Positives = 190/378 (50%), Gaps = 31/378 (8%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+SE++ A ++ I+AVTGTNGK+T T + ++L G VGGN+G+ LSE
Sbjct: 92 GIDVVSEVEVAYEL--SKSPIVAVTGTNGKTTTTTLLTKVLEGTGKPVRVGGNIGDSLSE 149
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
A+ S P V E+SSYQ+E K+F P +++LN+T DHL RHKTM+NY
Sbjct: 150 VAY-------SMPADGFLVAELSSYQLETI-KHFRPIGAIMLNITADHLARHKTMENYIA 201
Query: 145 TKCHLFSHMVNTKLGLLPFGN---QHLNEAIKGHRFNLAWIGAFP-GVKIDTEAKTASFE 200
K +F + ++T +L + + + H ++ P G D + +
Sbjct: 202 AKERIFENQLSTDFMVLNIDDPIVADMEHRVLSHILKISQHQVVPNGAYYDKGQCYVTKD 261
Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD--IGVDVEALNSTIEILRTPPHR 258
A V+ +H + G HN N L+V+ L +GV E ++ I HR
Sbjct: 262 GIATPVIGSDDIH---IPGSHNIENI----LTVIALTYVLGVPAETIHRIISEFHGVEHR 314
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
++ V + I G+T+ +DSKATN+++ L + VILL G + E F +L+
Sbjct: 315 LERV-KTIDGITFYNDSKATNVDSVVKALESFD--QSVILLAGGHDKMTPLED--FMQLV 369
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
+ +H + VI G + G+ P + ++MKDAV ++A GD ++LSP
Sbjct: 370 K--DHTKAVIFMGEAADRFEAAAKEAGVQ-PIYRASSMKDAVEQGYKLADQGDIVLLSPA 426
Query: 379 CASFDEFRNFEHRGMVFQ 396
C+SFD + FE RG F+
Sbjct: 427 CSSFDWYSCFEERGDDFK 444
>gi|387773943|ref|ZP_10129225.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Haemophilus
parahaemolyticus HK385]
gi|386903435|gb|EIJ68250.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Haemophilus
parahaemolyticus HK385]
Length = 433
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 114/395 (28%), Positives = 182/395 (46%), Gaps = 48/395 (12%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
F L + + +G V+ +++ + + + I+A+TG+NGKSTV T V +M GI
Sbjct: 76 FALATPEIQQAINAGVEVVGDIELFCREV--TAPIIAITGSNGKSTVTTLVTEMAKQAGI 133
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTP 130
+ +GGN+G P AL + + V+E+SS+Q+E + + VLN++
Sbjct: 134 KVGMGGNIGVP---------ALSLLNSDYALYVLELSSFQLETTSS-LKAVAATVLNVSE 183
Query: 131 DHLERHKTMKNYALTKCHLFSHMVNTKL-GLLP--FGNQHLNEAIKGHRFNLAWIGAFPG 187
DH++R+ ++ +Y K ++++ N + G P + Q + I+ N +
Sbjct: 184 DHMDRYDSLADYRAAKLKIYNNAENVIVNGEDPQTYPEQAVKNLIRFAEHNAEY------ 237
Query: 188 VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNS 247
T V G + + M + GRHN NA A G+ E +
Sbjct: 238 --------TLRHGVLYAGETAVMGTKQMLIHGRHNEMNALAAMALAD--AAGIPREGIVK 287
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKVL 306
++I HR Q V + GV WV+DSKATN+ +T L L+ +LLGG K
Sbjct: 288 ALQIYGGLAHRFQAVPTN-DGVRWVNDSKATNVGSTVAALNGLEVAGTLYLLLGGDGKAA 346
Query: 307 NGQESNGFEKLIEPLNHHRCVIT--FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR 364
+ E ++PL + ++ FG G + K LS V M +AV R
Sbjct: 347 DFSE-------LKPLINKPNIVCYCFGQDGAALAK------LSSQSVLVETMYEAVEKIR 393
Query: 365 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
GD ++LSP CAS D+F+NFE RG +F LA
Sbjct: 394 PQLKQGDMVLLSPACASLDQFKNFEQRGDIFMALA 428
>gi|300173574|ref|YP_003772740.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
gasicomitatum LMG 18811]
gi|333447883|ref|ZP_08482825.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc inhae
KCTC 3774]
gi|299887953|emb|CBL91921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
gasicomitatum LMG 18811]
Length = 448
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 109/353 (30%), Positives = 179/353 (50%), Gaps = 32/353 (9%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
+++AVTG+NGK+T + + ML G + GN+G P+ E A + +
Sbjct: 111 RLIAVTGSNGKTTTTSLIRDMLKSDGQKVTTAGNIGIPVCEVIKDLTADDT-------LL 163
Query: 104 VEVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162
+E+SS+Q M P+ P ++++ N+ +HL+ H T +NY K L + + +L +L
Sbjct: 164 LELSSFQLMGTPD--IRPDIALITNIFANHLDYHGTRENYVAAKFQLTKNQTSNQLLVLN 221
Query: 163 FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ---LQLHNMKVMG 219
Q +E IK A + AF +K D +T + ++ ++S + L +K++G
Sbjct: 222 ADGQDTDEFIKKTH---AKVVAFSRIKNDYTVRTDNVDL----IISDNHLMPLSGIKLVG 274
Query: 220 RHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATN 279
HN N VAA++V L GV A+ +E HR+Q V D GV + +DSKAT+
Sbjct: 275 PHNLENI-VAAVTVAKL-AGVHDTAIRHVLETFGGVEHRLQHVLTD-NGVVFYNDSKATD 331
Query: 280 LEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWK 339
+EAT T L H+ I L G + +L+ L+H + VI FG + I
Sbjct: 332 IEATQTALNSF--HQPTIWLAGGL-----DRGDDLMRLLPNLSHVKAVIAFGETQQKI-- 382
Query: 340 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 392
V + P V +++ AV A ++A GD ++LSP AS+D++++FE RG
Sbjct: 383 VAVARAANKPVITVDDVEQAVPVAVKLAVTGDVVLLSPAAASWDQYKSFEERG 435
>gi|260767159|ref|ZP_05876102.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio furnissii
CIP 102972]
gi|260617833|gb|EEX43009.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio furnissii
CIP 102972]
Length = 439
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 121/369 (32%), Positives = 172/369 (46%), Gaps = 57/369 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G M N GI VGGN+G P A +A P+ ++ V+
Sbjct: 110 VIAITGSNGKSTVTDLTGVMANAAGIATAVGGNIGVP----ALDLLAQPA-----ELYVL 160
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E + + LNL+ DH++R+ M Y K +F H +VN
Sbjct: 161 ELSSFQLETTSS-LALKAAAFLNLSEDHMDRYDGMAGYRQAKLRIFEHAQTAVVNAD--- 216
Query: 161 LPFGNQHLNEAIKGH--RFNLAWIGAFPGVKID-TEAKTASFEVPAVGVVSQLQLHNMKV 217
Q +A G RF L F + D E A+ EV L ++ +
Sbjct: 217 ---DTQTYPDAYSGRTVRFGLEQPAEFTTAQHDGKEVLLANGEV-------VLPTSDLSL 266
Query: 218 MGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDS 275
+GRHN N +A L G++ + AL S + HR Q+V D QG+ WV+DS
Sbjct: 267 VGRHNVANVLTVLALLDAAGVNYTNALPALKSYTGLT----HRCQVV-ADNQGIKWVNDS 321
Query: 276 KATNLEATCTGLMDLKGHKCVILL-GGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSG 334
KATN+ +T L L + + LL GG K G + + ++E L C FG G
Sbjct: 322 KATNVASTLAALSGLTLNGTLYLLVGGVGK---GADFTPLKPVLETLPLMLCC--FGRDG 376
Query: 335 VLIWKTLVNNGLSIPCFAVAN----MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEH 390
+P A A M+ + R GD ++LSP CASFD+F+NF
Sbjct: 377 DQF----------MPLHASAQRFDTMEAIIASIRPQLKAGDMVLLSPACASFDQFKNFMA 426
Query: 391 RGMVFQELA 399
RG VF ELA
Sbjct: 427 RGDVFAELA 435
>gi|253681289|ref|ZP_04862087.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
botulinum D str. 1873]
gi|253562527|gb|EES91978.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
botulinum D str. 1873]
Length = 458
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 117/391 (29%), Positives = 187/391 (47%), Gaps = 50/391 (12%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+SG + SE++ + P K+ +TG++GK+T T V ML G + +VGGN+GNPL
Sbjct: 99 ESGSYITSEMEEFIKYCPA--KVFGITGSDGKTTTTTLVYNMLKSQGYKTWVGGNIGNPL 156
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
F I + + K V+E+SS+Q M I C ++V NL+P+HL+ HK M+
Sbjct: 157 ----FANIERMTKEDK---VVLELSSFQLMTINEDINC---ALVTNLSPNHLDVHKDMEE 206
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT-ASFE 200
Y K ++F + L +L N+ N+ + + G I E A F+
Sbjct: 207 YVNAKKNIFKYQNENDLLVLNRDNKITNDLVNEAK------GRVKQFSIKEEINNGAYFK 260
Query: 201 VPAVGVVSQ--LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
+ ++ + L +K+ G HN N +AA ++ D+ VD+ + HR
Sbjct: 261 NNKLFILDKEVCALEEVKLKGMHNVENL-LAAFCLVHEDVNVDI--MRKVATTFTGVEHR 317
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+ V R++ GV + +DS A++ T GL K VIL+ G G++K I
Sbjct: 318 CEFV-RELDGVKYYNDSIASSPTRTIAGLRAF--EKPVILIAG-----------GYDKHI 363
Query: 319 --EPLNHH-----RCVITFGYSGVLIWKT----LVNNGLSIPCFAVANMKDAVNHARRMA 367
EPL + +I G + I K + N IP + + ++A+ A+ ++
Sbjct: 364 PFEPLAEEGYDKIKALILTGVTKEKIKKAFDDVIKNKQYKIPIYMLEGFEEAIYKAKEIS 423
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
GD + LSP CASFD F NFE RG F+E+
Sbjct: 424 KMGDIVTLSPACASFDMFANFEIRGNKFKEI 454
>gi|239907965|ref|YP_002954706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
magneticus RS-1]
gi|239797831|dbj|BAH76820.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
magneticus RS-1]
Length = 442
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 114/380 (30%), Positives = 176/380 (46%), Gaps = 51/380 (13%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G +V+SEL+ A+ P I+AVTG+NGK+T V + +L G F GGN+G PLS+
Sbjct: 99 GAQVVSELELASWFTPE--PIVAVTGSNGKTTTVMLISALLEAAGRRVFTGGNIGTPLSD 156
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
H + S +P V V+EVSS+Q+++ K F P V+V+LN +HL+ H + Y
Sbjct: 157 ---HVL---SEEPA-DVVVLEVSSFQLQL-TKTFRPKVAVLLNFAANHLDWHADLDEYLD 208
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K +F+ ++ ++ L + + G F A + + A + F P
Sbjct: 209 AKLRIFATQRPDDTAIV---SEELRDLLSGRPFTRAGVTWY--------AAASGFLCP-- 255
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
++ G HN N A L+ GVD++ PHR+QI+
Sbjct: 256 -----------RLAGVHNQANMEAAYLACRAF--GVDIKLARQVFADFVPAPHRIQIIG- 301
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH 324
+ GV +VDDSKAT + A + +L GG K G + + PL
Sbjct: 302 EKGGVLFVDDSKATTVTAMEAAIRSFD-RPVRLLCGGVWK-------GGDLEAMLPLVKE 353
Query: 325 RCVIT--FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASF 382
+ V FG S + +P + +AV A GDA++LSPG +SF
Sbjct: 354 KVVAVGLFGGSREVFETAFAG---VVPVRYAPTLAEAVARIYADAAPGDAVLLSPGTSSF 410
Query: 383 DEFRNFEHRGMVFQELAFSA 402
D++ N++ RG FQ+ AF+A
Sbjct: 411 DQYPNYKARGRDFQQ-AFAA 429
>gi|319900364|ref|YP_004160092.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
helcogenes P 36-108]
gi|319415395|gb|ADV42506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
helcogenes P 36-108]
Length = 444
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 112/393 (28%), Positives = 194/393 (49%), Gaps = 47/393 (11%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G V+SE++FA + K++ +TG+NGK+T + + + G+ + GN+GN
Sbjct: 82 LKEKGTPVISEIEFAGRYT--DAKMVCITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGN 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL + K ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVATEKHDYYIIELSSFQLD--NMYRFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAK 195
M+NY K + + + + + + H A + F VK D +
Sbjct: 190 MQNYIDAKFRITRNQTPDDAFIYWNDDPIIKRELAKHGLK-AHLYPFASVKEDGAIAYVE 248
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTIEILRT 254
E+ A + ++ + + G HN +N+ A +S L G++ E + + +
Sbjct: 249 DGEIEINA-PIAFNMEQEELALRGTHNLYNSLAAGISANLA---GIEKEYIRKALSDFKG 304
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGF 314
HR++ V D++G+ +++DSKATN+ + L + K V++LGG+ K N +
Sbjct: 305 VEHRLEKVC-DVRGIHFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK------GNDY 356
Query: 315 EKLIEPLNHHRCVITFGYSGVLIWKTLVN-------NGLSIPCFAV-ANMKDAVNHARRM 366
+ IE L +C L++ L N + L +P V MKDAV+ A R+
Sbjct: 357 TE-IEDLVREKC-------SALVYLGLHNEKLHGFFDRLGLPVADVQTGMKDAVDAAFRL 408
Query: 367 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
A G+ I+LSP CASFD F+++E RG F+ A
Sbjct: 409 AKKGETILLSPCCASFDLFKSYEDRGDQFKACA 441
>gi|157963624|ref|YP_001503658.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
pealeana ATCC 700345]
gi|157848624|gb|ABV89123.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
pealeana ATCC 700345]
Length = 439
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 49/383 (12%)
Query: 25 GKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
G V+ +++ FA V S K++ +TG+NGK+TV T VG+M G VGGN+G P
Sbjct: 90 GIEVIGDVELFARAVAQTSAKVIGITGSNGKTTVTTLVGEMAKASGSSYAVGGNIGVPAL 149
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
+ +PK + V+E+SS+Q+E C + LN++ DH++R+ +++Y
Sbjct: 150 DLLL--------EPK-DLYVLELSSFQLETTYSLQC-VAATCLNISEDHMDRYSDLESYR 199
Query: 144 LTKCHLFSH---MVNTKLGLLPFGNQHLNEAIKGHRFNL-AWIGAFPGVKIDTEAKTASF 199
K L+ V + L N N+ F L A G GV + +S
Sbjct: 200 QAKLKLYEQSKMAVFNREDTLTLPNNPTNQ----QSFGLDAPEGDDWGVSGGMIVQGSSQ 255
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+P + ++ ++G HN N AA+A + G+ +E + + + H
Sbjct: 256 IMP---------ISDVALVGSHNLANIIAAMALTTAAGIKRECQIEVAKTFLGL----AH 302
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKVLNGQESNGFE 315
R ++V DI GVT+V+DSKATN+ AT + L H + +++ GG K G + E
Sbjct: 303 RCEVVA-DIDGVTYVNDSKATNIGATVAAIDGLSEHLGELILIAGGDGK---GADFKPLE 358
Query: 316 KLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
++E ++ +I G G I GL VANM +AV A +AT GD ++L
Sbjct: 359 PVLEKVSQ---LIVLGKDGDKIA------GLKPEAIKVANMVEAVAKAHELATAGDIVIL 409
Query: 376 SPGCASFDEFRNFEHRGMVFQEL 398
SP C+S D + NF RG F+ L
Sbjct: 410 SPACSSLDMYPNFMARGDEFRSL 432
>gi|422615761|ref|ZP_16684468.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. japonica str. M301072]
gi|330895229|gb|EGH27567.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. japonica str. M301072]
Length = 448
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 115/370 (31%), Positives = 181/370 (48%), Gaps = 55/370 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL + ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDEVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYNGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + + +
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKYLAFQFENL-----MSV 265
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
+KV G HN A A LG +G+ +A+ +++ HR Q + R+ GV +
Sbjct: 266 RELKVRGAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL-REHDGVHYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCV 327
+DSKATN+ A + D+ G K V++ GG K + F L P+ H R
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGAD------FSGLRAPVAKHCRAA 375
Query: 328 ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ G LI + L G ++P V ++ AV H+ ++A GDA++LSP CAS D F+N
Sbjct: 376 VLLGRDAELIAQAL---GDAVPLVRVDTVQAAVEHSAKLALRGDAVLLSPACASLDMFKN 432
Query: 388 FEHRGMVFQE 397
+E RG VF +
Sbjct: 433 YEERGRVFAQ 442
>gi|297588289|ref|ZP_06946932.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
magna ATCC 53516]
gi|297573662|gb|EFH92383.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
magna ATCC 53516]
Length = 441
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 112/372 (30%), Positives = 188/372 (50%), Gaps = 19/372 (5%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
V+S+L+ A Q I IKI+A+TGTNGK+T + + +MLN G +A GN+G +
Sbjct: 83 EVVSDLELA-QRIFEDIKIVAITGTNGKTTTTSLMTKMLNDSGRKAISIGNIGVGMLWEI 141
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
++ S K + V+E SS+Q+E K F P S ++N+TPDH++ H +M+NY K
Sbjct: 142 YN-----SDKDTY--FVIECSSFQLE-STKNFKPQYSCIINITPDHIDWHGSMQNYVNAK 193
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
++ + +L +++ E K + N+ + VK + K S
Sbjct: 194 KNVLKNQDENCYTVLNVDDEYYEECKKFTKSNVYDVSTSTDVKKGSFIKDDSIYFSDSDC 253
Query: 207 VSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI 266
+ L ++K++G HNY N L IG++ +++ T+ HR++ V R++
Sbjct: 254 NKIIDLKDVKLIGYHNYQNVLFCV--TLAKLIGINDDSIRQTLMSFSGVEHRLEFV-REL 310
Query: 267 QGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRC 326
GV + +DSK TN++A+ + + +IL GG K ++ + F I + +
Sbjct: 311 SGVKYYNDSKGTNVDASVKAIESFDKN-VIILAGGYDKKVS---LDNF--FIAGKDKFKA 364
Query: 327 VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR 386
+I G + L K G F V +MK AV A ++A +GD ++LSP AS+ +
Sbjct: 365 LILMGQTRDLFEKKAREYGFG-NIFLVDDMKQAVTQANKIAESGDVVLLSPASASWGMYN 423
Query: 387 NFEHRGMVFQEL 398
N+E RG F+EL
Sbjct: 424 NYEERGNEFKEL 435
>gi|294101816|ref|YP_003553674.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aminobacterium
colombiense DSM 12261]
gi|293616796|gb|ADE56950.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminobacterium
colombiense DSM 12261]
Length = 457
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 118/380 (31%), Positives = 182/380 (47%), Gaps = 31/380 (8%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+ E+DF A I K++ VTG+NGKST +G +L G + V GN+GNPLS
Sbjct: 95 GIPVIGEIDFVAPHIKG--KVIGVTGSNGKSTTTMLIGHLLKKYGYKTAVAGNIGNPLS- 151
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
H + V+E+SS+Q+ + V++V NL PDH++ H + NY
Sbjct: 152 --LH------ASQNLDFIVIELSSFQLYWAH-LLKSHVAIVTNLAPDHIDWHGSFTNYLK 202
Query: 145 TKCHLFSHMVNTKLGLLPFGN-QHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203
K L ++ + L + K +L W G P K T+A E A
Sbjct: 203 AKARLVRLQEPGHWAVVQNRDVDALQLSGKSAVASLYWEGQEPVHK--TDAYICMGEQEA 260
Query: 204 VGVVSQLQL----HNMKVMGRHNYHNAAVAALS-VLGLDIGVDVEALNSTIEILRTPPHR 258
++ +L ++ ++GRHN N A+ A + +LG GV L + PHR
Sbjct: 261 WLSYNKKELLFDYRDVDLIGRHNLENLAMTASALILG---GVPCSNLTKQLSDFIPLPHR 317
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
V +I GV ++DDSK TN+ A+ T L + G K V++LGGQ K G++ + + +
Sbjct: 318 CTFV-AEINGVRYIDDSKGTNVAASATALTSIHGPK-VVILGGQGK---GEDYSPLAEAV 372
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
+ R I G I L G + V +M+DAV A ++ G+ ++LSP
Sbjct: 373 K--KEARVAIVLGAEKKPIVTALEGAGFA-RHIEVDSMEDAVKAAMALSLPGETVLLSPA 429
Query: 379 CASFDEFRNFEHRGMVFQEL 398
C S+D + +++ RG FQ L
Sbjct: 430 CTSWDMYPSYKKRGEHFQHL 449
>gi|238916668|ref|YP_002930185.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
eligens ATCC 27750]
gi|259509787|sp|C4Z534.1|MURD_EUBE2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|238872028|gb|ACR71738.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
eligens ATCC 27750]
Length = 450
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 110/359 (30%), Positives = 182/359 (50%), Gaps = 25/359 (6%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
KI+A+TGTNGK+T VGQ++ + FV GN+GN ++ L +S+ + VA
Sbjct: 109 KIIAITGTNGKTTTTALVGQIIAAYNEKTFVVGNIGN-----SYTGEVLKTSEDSYTVA- 162
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E ++ F P VS +LN+TPDHL RH TM+ YA TK + + +L
Sbjct: 163 -EISSFQLETVHE-FHPIVSAILNITPDHLNRHHTMECYAWTKERISENQTKADTCVLNL 220
Query: 164 GNQHLNEAIKGHRFNLAWIGA--FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRH 221
+++L + + N+ W + P V + + + L +H+M ++G+H
Sbjct: 221 EDKYLTDFAPECKANVVWFSSERKPSVGAYVDGEMIKY-TDGTNDYDMLNVHDMNLLGKH 279
Query: 222 NYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATN 279
NY N AA+A G+ + +E + + HR++ V GV + +DSK TN
Sbjct: 280 NYENVCAAIAMTKAAGIPDDIIIEQVKK----FKAVEHRIEYVATK-NGVDYYNDSKGTN 334
Query: 280 LEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWK 339
EA + + K IL+GG G E + + K + + + ++ G + I
Sbjct: 335 PEAAVKAIEAMV--KPTILIGGGYD--KGSEFDLYVKAFK--DKVKLLVLIGQTSAKIAD 388
Query: 340 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
T G +A +M+ V+ + A +GDA++LSP CAS+ F N+E RG +F++L
Sbjct: 389 TCKKYGFENIEYA-DSMEQVVDICAKNAVSGDAVLLSPACASWGMFDNYEQRGRIFKDL 446
>gi|357236480|ref|ZP_09123823.1| putative UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Streptococcus criceti HS-6]
gi|356884462|gb|EHI74662.1| putative UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Streptococcus criceti HS-6]
Length = 451
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 111/397 (27%), Positives = 185/397 (46%), Gaps = 63/397 (15%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+A L+ G V +E++ A ++ I+ +TG+NGK+T T + +LN G A + GN
Sbjct: 89 VAKALRKGIPVYTEVELAYRI--SESPIIGITGSNGKTTTTTMIANVLNAAGQSALLSGN 146
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P SE A I V+E+SS+Q+ + + F P ++V+ NL P H++ H
Sbjct: 147 IGFPASEVAMTAI-------DKDTLVMELSSFQL-MGVETFHPHMAVITNLMPTHIDYHG 198
Query: 138 TMKNYALTKCHLFSHMV-------------------NTKLGLLPFGNQHLNEAIKGHRFN 178
T ++Y K HL M T+ +LPF Q E + G
Sbjct: 199 TFEDYVAAKWHLQGQMTADDYLILNFNQDLAKELASKTQATVLPFSTQ---EEVDGAYLK 255
Query: 179 LAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI 238
++ F G ++ + + V G HN NA +AA++V L
Sbjct: 256 DGYL-CFKGEQV-------------------MAADTIGVPGSHNIENA-LAAIAVAKLS- 293
Query: 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL 298
GVD + T+ HR+Q + + ++GV++ +DSK+TN+ AT L +K +++
Sbjct: 294 GVDNAVIAQTLSSFSGVKHRLQFLGQ-VKGVSFYNDSKSTNILATQKALSGFDNNKVILI 352
Query: 299 LGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKD 358
GG + N F++LI + + +I G S + + G +P ++KD
Sbjct: 353 AGGLDR------GNEFDELIPDIVGLKKMIIIGQSAPRVKRAADKAG--VPYLDAEDVKD 404
Query: 359 AVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
A + A + A D I+LSP AS+D +++FE RG F
Sbjct: 405 AASIAFKEAAPDDVILLSPANASWDMYKSFEVRGDDF 441
>gi|269118797|ref|YP_003306974.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sebaldella
termitidis ATCC 33386]
gi|268612675|gb|ACZ07043.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sebaldella
termitidis ATCC 33386]
Length = 445
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 113/422 (26%), Positives = 198/422 (46%), Gaps = 64/422 (15%)
Query: 9 LEFQLKATGL---ACLLQSGKR----VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFV 61
+EF +K+ G+ A LL+ V+SE+D A + + + KI+++TGTNGK+T T +
Sbjct: 50 IEFIVKSPGIPWDAELLEKADSLRISVISEIDLAYRYMDKKTKIISITGTNGKTTTATKI 109
Query: 62 GQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT 121
++L G +A + GN A F L S + V+E+SSYQ+E +
Sbjct: 110 YELLKEAGFDAELAGN-------AGFSFAKLVSDGKEPDYVVLELSSYQLE-NDPEVHSH 161
Query: 122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG----------NQHLNEA 171
++ ++NLTPDHL R+ ++ +Y TK ++F H L+ N+ +++
Sbjct: 162 IAGIINLTPDHLTRYNSLDDYYKTKFNIFDHQNENDYALINLDDKEILRIISENKDIDDK 221
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ--------LQLHNMKVMGRHNY 223
IK R L+ E K F+ + V+ ++ + + G+HN
Sbjct: 222 IKAKRIFLSG-----------EKKADVFQKDGMINVTDHNSQLIPLMKTSELSLKGKHNL 270
Query: 224 HNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEAT 283
N + + +G+ + VD+E + S + + HR++ + V +++DSK TN E+T
Sbjct: 271 EN--ILFIISVGMILNVDIEVMKSFLSSTKPLEHRLENFFEKGKTV-FINDSKGTNSEST 327
Query: 284 CTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLV 342
+ G V++ GG K Q SN ++LI+ + V G + ++ K L
Sbjct: 328 IKAIEAF-GKSTVLICGGYDK----QASN--KELIDKIAEKVEFVYLIGQTSDILEKELK 380
Query: 343 NNGLSIPCFAVANMKDAVNHARRMATNGD-----AIVLSPGCASFDEFRNFEHRGMVFQE 397
+ + N+K N + N D ++ SP +SFD+F+NFE RG +F+E
Sbjct: 381 DQKYT----QYKNLKTLENVLNDIKDNLDFSKEQVVLFSPATSSFDQFKNFEDRGRIFKE 436
Query: 398 LA 399
L
Sbjct: 437 LT 438
>gi|389577327|ref|ZP_10167355.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
cellulosolvens 6]
gi|389312812|gb|EIM57745.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
cellulosolvens 6]
Length = 452
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 174/356 (48%), Gaps = 19/356 (5%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K+LAVTGTNGK+T VT +G+++ E +V GN+G P ++ + L ++ + VA
Sbjct: 108 KVLAVTGTNGKTTTVTLLGEIMKDYYPEVYVVGNIGTPYTD-----VVLQQTENAWTVA- 161
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
EVSS+QME + F P S + N+T DHL RH TM+ Y K + + +L +
Sbjct: 162 -EVSSFQMETIEE-FHPVASALTNITEDHLNRHHTMEEYIRCKARVTENQTAEDCCVLNY 219
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVG-VVSQLQLHNMKVMGRHN 222
++ L + + + + ++ + + + G V+ ++ +++++G HN
Sbjct: 220 EDEVLRPFAEKVNAKVIFFSSRRVLEKGIYLEGDTIRLKDGGEVIDVVKTGDLQLLGLHN 279
Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
+ N VA + GV ++++ TI R HR++ V +GV + +DSK TN +A
Sbjct: 280 FENVMVAV--AMAYFAGVPMDSIRRTICAFRGVEHRIEFVEEK-KGVRYYNDSKGTNPDA 336
Query: 283 TCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLV 342
G+ + C+I G ++ N F+ + + G + I T
Sbjct: 337 AIKGIQAMDRPTCLIGGGFDKQLPFDDWINAFDGKV------KFFALIGQTAQTIAGTAE 390
Query: 343 NNGLSIPCFAVA-NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
G A N+++AV A GDA++LSP CAS+ +F N+E RG +F+E
Sbjct: 391 RLGFPKEKIAFCDNLEEAVKACASHAVEGDAVLLSPACASWGQFDNYEQRGDMFKE 446
>gi|303230748|ref|ZP_07317495.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
atypica ACS-049-V-Sch6]
gi|302514508|gb|EFL56503.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
atypica ACS-049-V-Sch6]
Length = 454
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 126/375 (33%), Positives = 187/375 (49%), Gaps = 31/375 (8%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++ A V I L VTGTNGK+T T + Q++ G+ VGGN+G+ LSEAA+
Sbjct: 95 VVSEVELAYDVCKSPI--LGVTGTNGKTTTTTLLTQVMESTGLPVKVGGNIGDSLSEAAY 152
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
H P+ V E+SSYQ+E K FCP ++VLN+TPDHL RHKTM+NYA K
Sbjct: 153 HM-------PEGGYLVAELSSYQLETI-KSFCPLGAIVLNVTPDHLARHKTMENYAAAKA 204
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT----EAKT--ASFEV 201
+F + +L + + K + I K+D+ E T A +
Sbjct: 205 RIFMNQNPENFVVLNDDDPIVRAMKKDAHSKVLSISQHH--KVDSGAYFEGNTCYAVLDG 262
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
A V+ +H + G HN N + A+ L +GV+VE + TIE HR++
Sbjct: 263 KATPVIDTEHIH---IKGSHNIEN--ILAVIALTYALGVEVEHIKHTIEQFHGVEHRLER 317
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V VT+ +DSKATN ++ L D ++L GG K+ ++ F +++
Sbjct: 318 V-TTFHDVTFYNDSKATNTDSVVKAL-DAFDKPVILLAGGHDKMTPLED---FMNIVKA- 371
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
H + VI G + V G+ +MK+AV ++A GD ++LSP C+S
Sbjct: 372 -HTKEVIFMGEAADRFESVAVKMGVQ-HIHRAQSMKEAVALGYQLAKAGDIVLLSPACSS 429
Query: 382 FDEFRNFEHRGMVFQ 396
FD + FE RG F+
Sbjct: 430 FDWYSCFEERGEDFK 444
>gi|66047331|ref|YP_237172.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. syringae B728a]
gi|75500772|sp|Q4ZNY8.1|MURD_PSEU2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|63258038|gb|AAY39134.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
syringae pv. syringae B728a]
Length = 448
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 112/364 (30%), Positives = 176/364 (48%), Gaps = 43/364 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL + ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDEVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F + G
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVN----G 216
Query: 165 NQHLNEAIKGHRFNLAWIG----AFPGVKIDTE--AKTASFEVPAVGVVSQLQLHNMKVM 218
L+ + G G F G + E K +F+ + + + +KV
Sbjct: 217 QDALSRPLIGEGLPCWTFGLNKPDFHGFGLREENGEKYLAFQFENL-----MPVRELKVR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN A A LG +G+ +A+ +++ HR Q + R+ GV + +DSKAT
Sbjct: 272 GAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL-REHDGVHYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D+ G K V++ GG K + F L P+ H R + G
Sbjct: 329 NVGAALAAIEGLGSDIDG-KLVLIAGGDGKGAD------FSGLRAPVARHCRAAVLLGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
LI + L G ++P V ++ AV H+ ++A GDA++LSP CAS D F+N+E RG
Sbjct: 382 AELIAQAL---GDAVPLLRVDTVQAAVEHSAKLAQCGDAVLLSPACASLDMFKNYEERGR 438
Query: 394 VFQE 397
VF +
Sbjct: 439 VFAQ 442
>gi|288801604|ref|ZP_06407046.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
melaninogenica D18]
gi|288335646|gb|EFC74079.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
melaninogenica D18]
Length = 443
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 104/387 (26%), Positives = 195/387 (50%), Gaps = 42/387 (10%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L+ G ++SE++FA + + K++ +TG+NGK+T + + + G +A + GN+GN
Sbjct: 82 LIAQGTHIISEIEFAGRYT--NSKMICITGSNGKTTTTSLIYHIFKDAGYDAGLAGNIGN 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ + ++E+SS+Q++ N Y F ++++LN+TPDHL+R+
Sbjct: 140 SL--------ALQVAEDPHEYYIIELSSFQLD--NMYDFRANIAILLNITPDHLDRYDYK 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+NYA K + + TK + N + +F++ + +P ++
Sbjct: 190 FENYADAKMRIIQNQ--TKEDSFIYWNDDPVIKKELEKFDVHAV-CYPFSELKENGSIGY 246
Query: 199 FEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSVLGLDI-GVDVEALNSTIEILR 253
E + ++ ++ + GRHN +N+ A ++ DI G+ E + ++
Sbjct: 247 IEEGQYTIEQPEPFNMEQEDLSLTGRHNIYNSLAAGIAS---DISGIKKENIRKSLSDFP 303
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
HR++ V + + GV +++DSKATN++A L ++ ++++GG+ K G + N
Sbjct: 304 GVEHRLEKVCK-VAGVQYINDSKATNVDACWYALESMRT-PTILIIGGKDK---GNDYNS 358
Query: 314 FEKLIEPLNHHRC--VITFGYSGVLIWKTLVNN--GLSIPCFAVANMKDAVNHARRMATN 369
+ L++ +C ++ G K L +N L +P +MKD V +A
Sbjct: 359 IKDLVK----QKCAGIVYLGADN----KKLHDNFDDLGLPIRDTHSMKDCVAACAELAKP 410
Query: 370 GDAIVLSPGCASFDEFRNFEHRGMVFQ 396
GD ++LSP CASFD F+N E RG F+
Sbjct: 411 GDTVLLSPCCASFDLFKNMEDRGEQFK 437
>gi|406600242|ref|YP_006745588.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
gelidum JB7]
gi|406371777|gb|AFS40702.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
gelidum JB7]
Length = 448
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 178/350 (50%), Gaps = 26/350 (7%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
+++AVTG+NGK+T + + ML G + GN+G P+ E + A + +
Sbjct: 111 RLIAVTGSNGKTTTTSLIRDMLKSDGQKVTTAGNIGIPVCEVIKNLTADDT-------LL 163
Query: 104 VEVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162
+E+SS+Q M P+ P ++++ N+ +HL+ H T +NY K L + +L +L
Sbjct: 164 LELSSFQLMGTPD--IRPDIALITNIFANHLDYHGTRENYVTAKFQLTKNQTTNQLLVLN 221
Query: 163 FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
Q ++ IK A + AF +K + +T S ++ G + L ++K++G HN
Sbjct: 222 ADGQDTDDFIKKTH---AKVVAFSRIKNEYTVRTDSVDLIISGN-HLMPLSDIKLVGPHN 277
Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
N VAA++V L GV A+ +E HR+Q V D GVT+ +DSKAT++EA
Sbjct: 278 LENI-VAAVTVAKL-AGVHDVAIRHVLETFGGVKHRLQHVFTD-NGVTFYNDSKATDIEA 334
Query: 283 TCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLV 342
T T L H+ I L G + +L+ L H + VI FG + I V
Sbjct: 335 TQTALNSF--HQPTIWLAGGL-----DRGDDLMRLLPNLLHVKAVIAFGETQQKI--VTV 385
Query: 343 NNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 392
+ P V +++ AV A ++A GD ++LSP AS+D++++FE RG
Sbjct: 386 ARAANKPVITVDDVEQAVPVAVKLAVTGDVVLLSPAAASWDQYKSFEERG 435
>gi|333398686|ref|ZP_08480499.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
gelidum KCTC 3527]
Length = 449
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 178/350 (50%), Gaps = 26/350 (7%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
+++AVTG+NGK+T + + ML G + GN+G P+ E + A + +
Sbjct: 112 RLIAVTGSNGKTTTTSLIRDMLKSDGQKVTTAGNIGIPVCEVIKNLTADDT-------LL 164
Query: 104 VEVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162
+E+SS+Q M P+ P ++++ N+ +HL+ H T +NY K L + +L +L
Sbjct: 165 LELSSFQLMGTPD--IRPDIALITNIFANHLDYHGTRENYVTAKFQLTKNQTTNQLLVLN 222
Query: 163 FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
Q ++ IK A + AF +K + +T S ++ G + L ++K++G HN
Sbjct: 223 ADGQDTDDFIKKTH---AKVVAFSRIKNEYTVRTDSVDLIISGN-HLMPLSDIKLVGPHN 278
Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
N VAA++V L GV A+ +E HR+Q V D GVT+ +DSKAT++EA
Sbjct: 279 LENI-VAAVTVAKL-AGVHDVAIRHVLETFGGVKHRLQHVFTD-NGVTFYNDSKATDIEA 335
Query: 283 TCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLV 342
T T L H+ I L G + +L+ L H + VI FG + I V
Sbjct: 336 TQTALNSF--HQPTIWLAGGL-----DRGDDLMRLLPNLLHVKAVIAFGETQQKI--VTV 386
Query: 343 NNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 392
+ P V +++ AV A ++A GD ++LSP AS+D++++FE RG
Sbjct: 387 ARAANKPVITVDDVEQAVPVAVKLAVTGDVVLLSPAAASWDQYKSFEERG 436
>gi|421142252|ref|ZP_15602228.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
fluorescens BBc6R8]
gi|404506646|gb|EKA20640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
fluorescens BBc6R8]
Length = 448
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 113/362 (31%), Positives = 180/362 (49%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLNDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNL--AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E + F L AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLIGEGLPCWTFGLNKPDFKAF-GLREENGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN A A LG +G+ +A+ S + HR Q V R++ GV + +DSKAT
Sbjct: 272 GAHN--QANALAALALGHAVGLPFDAMLSALRSFAGLEHRCQWV-RELAGVGYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D++G K V++ GG K + F+ L P+ + R V+ G
Sbjct: 329 NVGAALAAIEGLGADIQG-KVVLIAGGDGKGAD------FKDLKGPVAANCRAVVLMGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
LI L G ++P ++ DA+ ++ +A GD ++LSP CASFD F+N+E RG
Sbjct: 382 SGLIADAL---GDAVPQVRAQSLDDAIAQSKALAQPGDVVLLSPACASFDMFKNYEERGQ 438
Query: 394 VF 395
+F
Sbjct: 439 LF 440
>gi|395796142|ref|ZP_10475441.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
sp. Ag1]
gi|395339780|gb|EJF71622.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
sp. Ag1]
Length = 448
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 113/362 (31%), Positives = 180/362 (49%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLNDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNL--AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E + F L AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLIGEGLPCWTFGLNKPDFKAF-GLREENGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN A A LG +G+ +A+ S + HR Q V R++ GV + +DSKAT
Sbjct: 272 GAHN--QANALAALALGHAVGLPFDAMLSALRSFAGLEHRCQWV-RELDGVGYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D++G K V++ GG K + F+ L P+ + R V+ G
Sbjct: 329 NVGAALAAIEGLGADIQG-KVVLIAGGDGKGAD------FKDLKGPVAANCRAVVLMGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
LI L G ++P ++ DA+ ++ +A GD ++LSP CASFD F+N+E RG
Sbjct: 382 SGLIADAL---GDAVPQVRAQSLDDAIAQSKALALPGDVVLLSPACASFDMFKNYEERGQ 438
Query: 394 VF 395
+F
Sbjct: 439 LF 440
>gi|440742327|ref|ZP_20921653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae BRIP39023]
gi|440377650|gb|ELQ14295.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae BRIP39023]
Length = 448
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 114/370 (30%), Positives = 180/370 (48%), Gaps = 55/370 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + + +
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKYLAFQFENL-----MPV 265
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
+KV G HN NA A G +G+ +A+ +++ HR Q + R+ +GV +
Sbjct: 266 RELKVRGAHNQSNALAALAL--GHAVGLPFDAMLASLREFTGLEHRCQWL-REHEGVHYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCV 327
+DSKATN+ A + D+ G K V++ GG K + F L P+ H R
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGAD------FSGLRAPVAEHCRAA 375
Query: 328 ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ G LI + L G ++P V ++ AV + ++A GDA++LSP CAS D F+N
Sbjct: 376 VLLGRDAQLIAQAL---GDAVPLVHVDTVQAAVEQSAKLAQRGDAVLLSPACASLDMFKN 432
Query: 388 FEHRGMVFQE 397
+E RG VF +
Sbjct: 433 YEERGRVFAQ 442
>gi|168211219|ref|ZP_02636844.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
perfringens B str. ATCC 3626]
gi|182626019|ref|ZP_02953782.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
perfringens D str. JGS1721]
gi|170710774|gb|EDT22956.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
perfringens B str. ATCC 3626]
gi|177908726|gb|EDT71237.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
perfringens D str. JGS1721]
Length = 458
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 176/366 (48%), Gaps = 40/366 (10%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K+ VTG++GK+T T V ++L+ G + + GGN+G PL F I + K V
Sbjct: 118 KVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPL----FSNIEEIKEEDK---VV 170
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+ + V++V N+TP+HL+ HK M+ Y K ++F + L ++
Sbjct: 171 LELSSFQLMTMDVEI--DVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLVIND 228
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
N+ K + + + D K V V + ++ + G HN
Sbjct: 229 ENEITKNLDKEAKGKVVRFSSKKTAGEDAYYKDGKLYVHGKEVCKK---DDIIIKGMHNV 285
Query: 224 HNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEAT 283
N A L+V V +E++ E HR + + R++ GV + +DS A+ T
Sbjct: 286 ENYLAAFLAVYD---EVSIESMKKVAETFGGVHHRCEFI-REVDGVKYYNDSIASTPTRT 341
Query: 284 CTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI--EPLNHH-----RCVITFGYSGVL 336
GL K VILL G G++K + EPL + + ++ FG +
Sbjct: 342 LAGLKAF--EKPVILLAG-----------GYDKHVPFEPLAYEGYEKIKAIVLFGVTKEK 388
Query: 337 I---WKTLVNN-GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 392
I +K L G+ +P ++ ++++ V+ A+ +A NGD I LSP CASFD F+NFE RG
Sbjct: 389 IKAAFKRLEEEKGIHVPVYSGESLEEVVSIAKSIAENGDIITLSPACASFDMFKNFEVRG 448
Query: 393 MVFQEL 398
F+E+
Sbjct: 449 DKFKEI 454
>gi|418678940|ref|ZP_13240212.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
kirschneri serovar Grippotyphosa str. RM52]
gi|418687863|ref|ZP_13249021.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
kirschneri serovar Grippotyphosa str. Moskva]
gi|418739344|ref|ZP_13295731.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
kirschneri serovar Valbuzzi str. 200702274]
gi|421092088|ref|ZP_15552846.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
kirschneri str. 200802841]
gi|400320700|gb|EJO68562.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
kirschneri serovar Grippotyphosa str. RM52]
gi|409999104|gb|EKO49802.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
kirschneri str. 200802841]
gi|410737602|gb|EKQ82342.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
kirschneri serovar Grippotyphosa str. Moskva]
gi|410753343|gb|EKR10309.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
kirschneri serovar Valbuzzi str. 200702274]
Length = 463
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 120/398 (30%), Positives = 190/398 (47%), Gaps = 60/398 (15%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE+D KI+ +TGT+GKST + + +L + GGNLG P +
Sbjct: 89 VISEIDLGRYFFKG--KIIGITGTDGKSTTTSLIAHLLKQGFPDLREGGNLGIPFTSFCK 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
I+L AV+E+SSYQ+E + VSV LNL DHLERHKTM+NY K
Sbjct: 147 ESISL---------AVLELSSYQLEDSSPLHL-NVSVFLNLASDHLERHKTMENYFQAKL 196
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAI---KGHRFNLAWIGAFPGVK--IDTEA---KTASF 199
+ + + N+ L+ ++ + E I ++ L G PG +D + KT+ F
Sbjct: 197 KI-ADLSNSNHSLIV--SEKIKERILNSTSYQCKLLSFGKTPGSNAFLDESSLKIKTSKF 253
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ +S+ L G HN N A + L+ +IG E++ + I + R PHR
Sbjct: 254 ----IYDISKFYLP-----GSHNRENLAASILA--AEEIGEKPESIQTRIPLFRGLPHRF 302
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAKVLNGQESNGFEKLI 318
QI + G+++++DSK+TNL + G+ K + ++LGG+ K + + F LI
Sbjct: 303 QIAGEKL-GISFINDSKSTNLHSMLAGMATWKNLDQTCLILGGRPKQEDPKPLYDF--LI 359
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR--MATNGD----- 371
+ + CV+ FG + +W+ + N + V N+ D ++ + T D
Sbjct: 360 KGIG---CVVLFGEARS-VWENGIRNIIGEKLHCVENLNDTFEIFKKGYILTAADSGKDS 415
Query: 372 -----------AIVLSPGCASFDEFRNFEHRGMVFQEL 398
+ V SP CASFD+++NFE RG F L
Sbjct: 416 MFRLSHGISISSFVFSPACASFDQYKNFEERGNHFLSL 453
>gi|148985270|ref|ZP_01818493.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP3-BS71]
gi|387757134|ref|YP_006064113.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae OXC141]
gi|418231770|ref|ZP_12858358.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA07228]
gi|418236068|ref|ZP_12862637.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA19690]
gi|419479539|ref|ZP_14019347.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA19101]
gi|419499230|ref|ZP_14038929.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47597]
gi|147922468|gb|EDK73587.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP3-BS71]
gi|301799723|emb|CBW32288.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae OXC141]
gi|353888076|gb|EHE67852.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA07228]
gi|353893997|gb|EHE73742.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA19690]
gi|379573193|gb|EHZ38149.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA19101]
gi|379602284|gb|EHZ67055.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47597]
gi|429317565|emb|CCP37349.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SPN034156]
gi|429319107|emb|CCP32342.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SPN034183]
gi|429320922|emb|CCP34316.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SPN994039]
gi|429322742|emb|CCP30357.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SPN994038]
Length = 446
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 106/374 (28%), Positives = 179/374 (47%), Gaps = 29/374 (7%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVAQTA----SDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + + G ++ EV
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLTSKTEATVVPFSTLEKVDGAYLEDGQLYFRGEV 261
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+ + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 262 -------VMAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 312
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 313 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 365
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 366 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANAS 423
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 424 WDMYANFEVRGDLF 437
>gi|261401755|ref|ZP_05987880.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
lactamica ATCC 23970]
gi|269208133|gb|EEZ74588.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
lactamica ATCC 23970]
Length = 445
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 117/388 (30%), Positives = 190/388 (48%), Gaps = 40/388 (10%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKDKIFRGD----------GVQVLNADDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + G + ++ + G H + A V A L +G+ L ++ +
Sbjct: 253 TGRLK---QGDEDLIATQDIPLQGLH--NAANVMAAVALCEAVGLPRNELLEHVKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
PHR++ + + GV ++DDSK TN+ AT + L+ + ++LGG K GQ+ F
Sbjct: 308 PHRVEKIG-EKNGVVFIDDSKGTNVGATVAAIAGLQ-NPLFVILGGMGK---GQD---FT 359
Query: 316 KLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 374
L + L + + V G I + L GL++ A +++AV A A GD ++
Sbjct: 360 PLRDALKDKAKGVFLIGVDAPQIRRDLDGCGLNMT--DCATLEEAVQTAYARAEAGDIVL 417
Query: 375 LSPGCASFDEFRNFEHRGMVFQELAFSA 402
LSP CASFD F+ + HR VF E AF A
Sbjct: 418 LSPACASFDMFKGYAHRSEVFIE-AFKA 444
>gi|78779845|ref|YP_397957.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Prochlorococcus marinus str. MIT 9312]
gi|118595673|sp|Q319C4.1|MURD_PROM9 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|78713344|gb|ABB50521.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
marinus str. MIT 9312]
Length = 468
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/381 (25%), Positives = 184/381 (48%), Gaps = 42/381 (11%)
Query: 31 ELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCI 90
E++ A +++ + + +TGTNGK+TV + +L + A GN+G PL + A+
Sbjct: 109 EINVAWEIL-KETNWIGITGTNGKTTVTHLLSHILCENKLYAPFAGNIGTPLCKYAY--- 164
Query: 91 ALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF 150
K V E+SSYQ+EI + P + + T DHLERHKT++NY K L
Sbjct: 165 --SKKYEKIDWVVAELSSYQIEISPE-VKPNIGIWTTFTEDHLERHKTLENYFNIKKSL- 220
Query: 151 SHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ- 209
+ + + + +++L + H +L+ GV I T ++F + Q
Sbjct: 221 --LEKSDFRIYNYDDKNL----RNHYSSLS-----KGVWITTSLDKSNFIQCDYWIDDQA 269
Query: 210 ---------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
+L + + G HN N + + +G+ + + ++ + PHRM+
Sbjct: 270 FIIERGKRLFKLEHFSLKGIHNLQNLLLVIAA--ARKVGLSGKKIKDSLSNYKQLPHRME 327
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP 320
++++ + ++DSKATN +++ G+ ++G + +I+ GG+ K N + + ++
Sbjct: 328 TIYKN-NDLEIINDSKATNFDSSIAGINSIEG-QIIIISGGRLK------GNKYSEWVQV 379
Query: 321 LNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD--AIVLSP 377
L +C+ FG S ++ L+N G F + +K+ +N N ++ SP
Sbjct: 380 LKQKVKCIFLFGESSKVLKMALINEGFKKDIFEFSELKELLNFVFHYLQNNKVGTLLFSP 439
Query: 378 GCASFDEFRNFEHRGMVFQEL 398
C+SFD+F+N+E RG F++L
Sbjct: 440 SCSSFDQFKNYEERGDHFKKL 460
>gi|423282438|ref|ZP_17261323.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis HMW 615]
gi|404582006|gb|EKA86701.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis HMW 615]
Length = 444
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 109/394 (27%), Positives = 194/394 (49%), Gaps = 53/394 (13%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LREQGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ K V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEEKHDYYVIELSSFQLD--NMYNFRADIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH--RFNLAWIGAFPGVKIDTEAKT 196
M+NY K + + + + + + + H R +L +P I E
Sbjct: 190 MQNYINAKFRITQNQTSEDAFIFWNDDPIIKRGLDKHGIRAHL-----YPFSAIKEEGSI 244
Query: 197 ASFEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTIEI 251
A E V + ++ + + G+HN +N+ A +S L G+ E + +
Sbjct: 245 AYVEDHEVVITEPIAFNMEQEQLALTGQHNLYNSLAAGISANLA---GITKEDIRKALSD 301
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQES 311
+ HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K
Sbjct: 302 FQGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK------G 353
Query: 312 NGFEKLIEPLNHHRCVITFGYSGVLIWKTLVN-------NGLSIPCFAV-ANMKDAVNHA 363
N + + IE L +C L++ L N + L +P V MKDAV A
Sbjct: 354 NDYTE-IEELVREKC-------SALVYLGLHNEKLHEFFDRLGLPVAEVQTGMKDAVEAA 405
Query: 364 RRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
++A G+ ++LSP CASFD F+++E RG F++
Sbjct: 406 YKLAKKGETVLLSPCCASFDLFKSYEDRGEQFKK 439
>gi|410465721|ref|ZP_11318936.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
magneticus str. Maddingley MBC34]
gi|409981237|gb|EKO37833.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
magneticus str. Maddingley MBC34]
Length = 442
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 174/375 (46%), Gaps = 50/375 (13%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G +V+SEL+ A+ P I+AVTG+NGK+T V + +L G F GGN+G PL++
Sbjct: 99 GAQVVSELELASWFTPE--PIVAVTGSNGKTTTVMLISALLEAAGRRVFTGGNIGTPLAD 156
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
H + S +P V V+EVSS+Q+++ K F P V+V+LN +HL+ H + Y
Sbjct: 157 ---HVL---SEEPA-DVVVLEVSSFQLQL-AKTFRPKVAVLLNFAANHLDWHADLDEYLD 208
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K +F+ ++ ++ L + + G F A + + A + F P
Sbjct: 209 AKLKIFAAQRPDDTAIV---SEELRDLLGGRPFTRAGVTWY--------AAASGFLCP-- 255
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
++ G HN N A L+ GVD++ PHR+QI+
Sbjct: 256 -----------RLAGVHNQANMEAAYLACRAF--GVDIDLARQVFADFVPAPHRIQIIG- 301
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH 324
+ GV +VDDSKAT + A + +L GG K G + + PL
Sbjct: 302 EKGGVLFVDDSKATTVTAMEAAIRSFD-RPVRLLCGGVWK-------GGDLEAMLPLVKE 353
Query: 325 RCVIT--FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASF 382
+ V FG S + ++P ++ DAV A GDA++LSPG +SF
Sbjct: 354 KVVAVGLFGGSREVFEAAFAG---TVPVSYDPSLADAVARIYADAAPGDAVLLSPGTSSF 410
Query: 383 DEFRNFEHRGMVFQE 397
D++ N++ RG FQ+
Sbjct: 411 DQYPNYKARGRDFQQ 425
>gi|422675673|ref|ZP_16735015.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. aceris str. M302273]
gi|330973389|gb|EGH73455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. aceris str. M302273]
Length = 448
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 114/370 (30%), Positives = 181/370 (48%), Gaps = 55/370 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL + ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDEVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + + +
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKYLAFQFENL-----MSV 265
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
+KV G HN A A LG +G+ +A+ +++ HR Q + R+ +GV +
Sbjct: 266 RELKVRGAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL-REHEGVDYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCV 327
+DSKATN+ A + D+ G K V++ GG K + F L P+ H R
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGAD------FSGLRAPVARHCRAA 375
Query: 328 ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ G LI + L G ++ V ++ AV H+ ++A GDA++LSP CAS D F+N
Sbjct: 376 VLLGRDAELIAQAL---GDAVALVRVDTVQAAVEHSAKLAQRGDAVLLSPACASLDMFKN 432
Query: 388 FEHRGMVFQE 397
+E RG VF +
Sbjct: 433 YEERGRVFAQ 442
>gi|281417761|ref|ZP_06248781.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
thermocellum JW20]
gi|281409163|gb|EFB39421.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
thermocellum JW20]
Length = 466
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 117/402 (29%), Positives = 188/402 (46%), Gaps = 60/402 (14%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V SE++ ++ P +I AVTG++GK+T T + ML G + ++GGN+G PL
Sbjct: 99 EEGTEVTSEMEVFFELCP--AEIFAVTGSDGKTTTTTLIYNMLKEQGYKCWLGGNIGIPL 156
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ K +V V+E+SS+Q+ K P V+VV N++P+HL+ HK+M+ Y
Sbjct: 157 ------LSKIEEIKDTDKV-VLELSSFQLHTMTK--SPNVAVVTNVSPNHLDVHKSMEEY 207
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNE---AIKGH-----RFNLAWIGA--------FP 186
K ++F + +L F N E KG R + GA F
Sbjct: 208 VFAKKNIFRYQSAEDRLVLNFDNDITREFAGEAKGDVVYFSRKTVLEKGAMLKDDMLVFR 267
Query: 187 GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
+ +TE AS ++ + G HN N A +V+ VD + +
Sbjct: 268 DGETETEIAKAS---------------DIVIPGVHNVENFLAATAAVIDC---VDRDVIR 309
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVL 306
HR+++V R+I GV + +DS A++ T GL K K +++ GG K +
Sbjct: 310 KVATTFTGVEHRIELV-REINGVKFYNDSIASSPTRTIAGLNSFK-DKVILIAGGYDKKI 367
Query: 307 NGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVN------NGLSIPCFAVANMKDA 359
++ L + +C++ G + I K L + G IP ++++A
Sbjct: 368 ------PYDALGPVIAEKVKCLVLIGQTAPKIEKALRDETERSGKGSDIPIKKCTSLEEA 421
Query: 360 VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 401
V A R A+ GD ++LSP ASFD F+NFE RG F+E+ S
Sbjct: 422 VKVAYRFASVGDVVILSPASASFDMFKNFEERGNRFKEIVNS 463
>gi|452992690|emb|CCQ95849.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
ultunense Esp]
Length = 453
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 118/389 (30%), Positives = 193/389 (49%), Gaps = 42/389 (10%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+++L+ A ++ P S +A+TGTNGK+T T VGQ N G V GN+G
Sbjct: 91 GIEVLTDLELAYRISPNS-NFIAITGTNGKTTTTTLVGQFFNKAGFTTHVAGNIG----- 144
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
+ SSK V VVE SS+Q+E F P +S++LN+TPDHL H T+ NY
Sbjct: 145 VGILWDVVNSSKE--DVFVVEASSFQLE-NTVEFNPKISLILNITPDHLNWHNTLDNYIK 201
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K +F + + +L + + L + NL W +D + +
Sbjct: 202 AKKKIFLNQAEDEYTILNYDDPLLKGMKDEIKANLTWFS------VDNKLSKGIYIENGY 255
Query: 205 GVVSQ-------LQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTP 255
V+ ++ + +K++G+HN N A+VA ++GLDI V ++LRT
Sbjct: 256 VVIDDGDKAEKVIRTNEIKILGKHNLENVLASVAIGWIMGLDINV-------MKKVLRTF 308
Query: 256 P---HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
P HR++ V I G+ + +DSK TN EA+ + ++ +++ GG K G E +
Sbjct: 309 PGVEHRIEYVDI-IDGIKFYNDSKGTNPEASIKAIEAVES-PIILIAGGHDK---GSEFD 363
Query: 313 GFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 372
F ++ + ++ G + I T + G + + V NM++AV + +A +GD
Sbjct: 364 NF--ILSFKGKVKSIVLLGETKEKIKDTALKYGFN-NVYIVDNMEEAVIKSYGLAESGDN 420
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQELAFS 401
I+LSP CAS+D + +FE RG F++ +
Sbjct: 421 ILLSPACASWDMYNSFEMRGNDFKKAVYD 449
>gi|254230420|ref|ZP_04923800.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25]
gi|262395261|ref|YP_003287115.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25]
gi|151937053|gb|EDN55931.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25]
gi|262338855|gb|ACY52650.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25]
Length = 437
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 115/400 (28%), Positives = 181/400 (45%), Gaps = 69/400 (17%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ +L G V+ +++ A + + + +A+TG+NGKSTV G M+ G++ VGGN
Sbjct: 85 IQAVLAKGTTVVGDIELFAWAVQKPV--IAITGSNGKSTVTDLTGVMVKAAGLDVGVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P AL + + V+E+SS+Q+E + + LNL+ DH++R++
Sbjct: 143 IGVP---------ALDLLEQDADLYVLELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYQ 192
Query: 138 TMKNYALTKCHLFSHMV-------------NTKLGLLPFG--NQHLNEAIKGHRFNLAWI 182
M +Y K +F H + ++ L+ FG NQ + G+R W+
Sbjct: 193 GMSDYRQAKLRIFDHAALAVVNRDDQETFPDAEMPLVTFGSDNQDFGLEVDGNR---TWL 249
Query: 183 GAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAV--AALSVLGLDIGV 240
+D + + + +K++G+HN NA V A L G+D
Sbjct: 250 -------LDHGQRVVASD-------------ELKLVGKHNLSNALVVLALLKAAGVDYHN 289
Query: 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILL 299
+ AL + + HR Q+V D QGV WV+DSKATN+ +T L L+ K +L+
Sbjct: 290 ALNALKNYTGL----THRCQVV-ADNQGVKWVNDSKATNIASTMAALSGLESTGKLYLLV 344
Query: 300 GGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDA 359
GG K G + + + + LN C FG G L M+D
Sbjct: 345 GGVGK---GADFSPLKPIFATLNLQLCC--FGADGDDFMP------LHESAIRFDTMEDV 393
Query: 360 VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
+ GD ++LSP CASFD+F NF RG F LA
Sbjct: 394 IQQVSSQLKPGDMVMLSPACASFDQFDNFMARGDAFAALA 433
>gi|340622896|ref|YP_004741348.1| D-glutamic acid-adding enzyme [Capnocytophaga canimorsus Cc5]
gi|339903162|gb|AEK24241.1| D-glutamic acid-adding enzyme [Capnocytophaga canimorsus Cc5]
Length = 444
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 106/385 (27%), Positives = 192/385 (49%), Gaps = 47/385 (12%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
++SE++FA + KI+A+TG+NGK+T + +L G+ V GN+G +
Sbjct: 88 EIISEIEFAYRYTKG--KIIAITGSNGKTTTTSLTYHILKESGLNVGVAGNIGK-----S 140
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALT 145
F + K + V+E+SS+Q++ F P ++++LN+TPDHL+R+ M+NY +
Sbjct: 141 FAQMVAEDDKEYY---VLEISSFQLDGITS-FKPHIAILLNITPDHLDRYDYKMENYIAS 196
Query: 146 KCHLFSHMVN----TKLGLLPFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTEAKTASFE 200
K + + P Q L + IK + + I+ E +
Sbjct: 197 KFRITENQTEDDYFIYDIDDPIIAQWLEKNEIKSQKIPFS---------IEKELNKGIYS 247
Query: 201 VPAV------GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
+ + ++++ M + G+HN N+ A++S L V E++ +++
Sbjct: 248 LKDIIHMNIDNQTFEIEVKEMSLKGKHNVKNSMAASVSSRLLK--VRKESIRESLKGFVG 305
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGF 314
PHR++ V + ++G+T+++DSKATN+ + L +K V ++GG K N +
Sbjct: 306 EPHRLEFV-KTVEGITYINDSKATNVNSVFFALDTMKT-PVVWIVGGVDK------GNDY 357
Query: 315 EKLIEPLNHH--RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 372
L+ P H R ++ G I K+ N +I +M++AV+ +++ A NGD
Sbjct: 358 SPLL-PYVHEKVRAIVCLGKDNSPILKSFGNVIDNI--LETQSMEEAVSLSKQFAKNGDT 414
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQE 397
++LSP CASFD F+N+E RG F++
Sbjct: 415 VLLSPACASFDLFKNYEERGNEFKK 439
>gi|429759638|ref|ZP_19292136.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
atypica KON]
gi|429179599|gb|EKY20846.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
atypica KON]
Length = 454
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 126/375 (33%), Positives = 187/375 (49%), Gaps = 31/375 (8%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++ A V I L VTGTNGK+T T + Q++ G+ VGGN+G+ LSEAA+
Sbjct: 95 VVSEVELAYDVCKSPI--LGVTGTNGKTTTTTLLTQVMESTGLPVKVGGNIGDSLSEAAY 152
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
H P+ V E+SSYQ+E K FCP ++VLN+TPDHL RHKTM+NYA K
Sbjct: 153 HM-------PEGGYLVAELSSYQLETI-KSFCPLGAIVLNVTPDHLARHKTMENYAAAKA 204
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT----EAKT--ASFEV 201
+F + +L + + KG + I K+D+ E T A +
Sbjct: 205 RIFMNQNPENFVVLNDDDPIVRAMKKGAHSKVLSISQHH--KVDSGAYFEGNTCYAVLDG 262
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
A V+ +H + G HN N + A+ L +GV VE + TIE HR++
Sbjct: 263 KATPVIDTEHIH---IKGSHNIEN--ILAVIALTYALGVKVEHIKHTIEQFHGVEHRLER 317
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V VT+ +DSKATN ++ L D ++L GG K+ ++ F +++
Sbjct: 318 V-TTFHDVTFYNDSKATNTDSVVKAL-DAFDKPVILLAGGHDKMTPLED---FMNIVKA- 371
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ + VI G + V G+ +MK+AV ++A GD ++LSP C+S
Sbjct: 372 -YTKEVIFMGEAADRFESVAVKMGVQ-HIHRAQSMKEAVALGYQLAKAGDIVLLSPACSS 429
Query: 382 FDEFRNFEHRGMVFQ 396
FD + FE RG F+
Sbjct: 430 FDWYSCFEERGEDFK 444
>gi|399114889|emb|CCG17685.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Taylorella
equigenitalis 14/56]
Length = 478
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 115/400 (28%), Positives = 187/400 (46%), Gaps = 53/400 (13%)
Query: 27 RVMSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
+++SE+D + + + IKI+ +TGTNGK+TV + V M + G+++ GN+ S
Sbjct: 102 KIISEIDLFYEAVKSNSKQIKIIGITGTNGKTTVTSMVRLMCEYAGLKSVEAGNI----S 157
Query: 84 EAAFHCIALPSSKPKF-QVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+A + K + V +E+SS Q+ Y C S +LN+T DH++ H +M+ Y
Sbjct: 158 PSALTVVCEFEEKNSWPDVISLELSSAQL-FYTDYICLDASTILNITQDHIDWHGSMEAY 216
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS-FEV 201
+K +FSH + F L+ A L + + P K D K + +
Sbjct: 217 IASKKKIFSHSKIAAVDENQFKEFGLSNA-------LVYRDSLPINKEDIGIKEVNGMKW 269
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+ + + MK+ G HN NA A +D+ E L + + HR
Sbjct: 270 FCTTDKNLMPVEAMKIRGNHNVLNAMAAMQLCRAIDLPF--EPLLTALRDYEAHNHRCTY 327
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------VLNGQES 311
V RDIQGV ++DDSK TN+ AT + D V++LGG+ K + N +S
Sbjct: 328 V-RDIQGVNFIDDSKGTNVGATVAAI-DGMYRNLVVILGGEGKGQDFTPLYESLRNRTKS 385
Query: 312 NGFEKLI------EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR 365
NG + ++ L+H+ + F + +IP V + +AV + +
Sbjct: 386 NGLKGIVLIGKDKNILSHYLNIKDFKFEE------------TIPVVVVNTIDEAVVESFK 433
Query: 366 MATNGDAIVLSPGCASFDEFRNFEHRGMVF----QELAFS 401
+A +GD ++LSP CAS D F+N+ RG+ F ELA S
Sbjct: 434 LAQSGDLVLLSPACASIDMFKNYHERGVKFVEAINELALS 473
>gi|384175262|ref|YP_005556647.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus subtilis
subsp. subtilis str. RO-NN-1]
gi|349594486|gb|AEP90673.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus subtilis
subsp. subtilis str. RO-NN-1]
Length = 451
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 179/374 (47%), Gaps = 26/374 (6%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V +E++ A + S K + +TG+NGK+T T + +ML +A + GN+G
Sbjct: 95 KRGIPVWTEIELAYYLT--SAKFIGITGSNGKTTTTTLIYEMLKADSQKALIAGNIGTVA 152
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
SE A+H + V E+SS+Q+ + F P +S++LN+ HL+ H T +NY
Sbjct: 153 SEVAYHADG-------DEWIVTELSSFQL-MGTHAFRPEISLILNVFDAHLDYHHTRENY 204
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K ++ H + ++ NQ ++ A I F K + +
Sbjct: 205 EKAKQKVYLHQTASDKAIV---NQDDETVVRLAEAGKAEIVPFSVSKTLEQGAYVKDSMI 261
Query: 203 AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
+ L L + + G HN N +AA++V+ G EA+ + HR+Q V
Sbjct: 262 MFNGEAILPLEEVVLPGAHNLENI-LAAIAVVKT-AGASNEAVKKVLTSFTGVKHRLQYV 319
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322
+ G + +DSKATN+ AT L K VILL G NGF+ L +
Sbjct: 320 -TTVNGRKFYNDSKATNILATSKALSAFD--KPVILLAGGL-----DRGNGFDDLKPYMK 371
Query: 323 HHRCVITFGYSGVLIWKTLVNNGLSIP-CFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
H + V+TFG + + K + N L I V N++ AV+ A ++ GD I+LSP CAS
Sbjct: 372 HVKAVLTFGQTAPKLEK--LGNELGIQHVKRVDNVEQAVSAAFALSNEGDVILLSPACAS 429
Query: 382 FDEFRNFEHRGMVF 395
+D+F+ FE RG +F
Sbjct: 430 WDQFKTFEERGDMF 443
>gi|294792042|ref|ZP_06757190.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
6_1_27]
gi|294457272|gb|EFG25634.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
6_1_27]
Length = 456
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 116/375 (30%), Positives = 184/375 (49%), Gaps = 25/375 (6%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+SE++ A +V I+AVTGTNGK+T T + ++L G VGGN+G+ LSE
Sbjct: 92 GIDVVSEVELAYEV--SKSPIVAVTGTNGKTTTTTLLTKVLEGSGKPVHVGGNIGDSLSE 149
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
A+ S P V E+SSYQ+E KYF P +++LN+TPDHL RHKTM+NY
Sbjct: 150 VAY-------SMPAGGFLVAELSSYQLETI-KYFRPIGAIMLNITPDHLARHKTMENYIA 201
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K +F + ++T +L + + + ++ I V+ +
Sbjct: 202 AKERIFENQLSTDYLVLNIDDPVVADMEHRSSSHILKISQKKAVENGAYYADGQCYIAKD 261
Query: 205 GVVS-QLQLHNMKVMGRHNYHNAAVAALSVLGLD--IGVDVEALNSTIEILRTPPHRMQI 261
GV + ++ + G HN N L+V+ L +GV VE ++ I HR++
Sbjct: 262 GVAKFVIGNEDIHIPGSHNIEN----ILTVIALSHALGVPVETIHRIISEFHGVEHRLER 317
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V + I G+T+ +DSKATN+++ L + ++L GG K+ E +E +
Sbjct: 318 V-KTIDGITFYNDSKATNVDSVVKALESFD-QQVILLAGGHDKM------TPLEDFMELV 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ F ++T P + +MK+AV ++A GD ++LSP C+S
Sbjct: 370 KEKTKAVIFMGEAADRFETAAKEAGVKPIYRALSMKEAVEQGYKLAETGDIVLLSPACSS 429
Query: 382 FDEFRNFEHRGMVFQ 396
FD + FE RG F+
Sbjct: 430 FDWYSCFEERGDDFK 444
>gi|33863701|ref|NP_895261.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Prochlorococcus marinus str. MIT 9313]
gi|60390535|sp|Q7V5V5.1|MURD_PROMM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|33635284|emb|CAE21609.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
marinus str. MIT 9313]
Length = 460
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 118/394 (29%), Positives = 191/394 (48%), Gaps = 33/394 (8%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L Q G + E+ A + + + +A+TGTNGK+TV + +L G+ A +GGN
Sbjct: 86 LTALRQRGIDIDGEMAVAWRSLSH-LPWIAITGTNGKTTVTHLLNHVLESNGLRAPMGGN 144
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G+ +E A + +P + V+E+SSYQ+E + P + + NLTPDHLERH
Sbjct: 145 VGHAAAEVALKWRQPNAQRPDW--LVMELSSYQIEAAPE-IAPRMGIWTNLTPDHLERHG 201
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF-PGVKIDTEAKT 196
T+ Y K L +++ + + L L W+ + PG T
Sbjct: 202 TLDAYRTIKRGLLE---RSEIRIFNGDDPDLRSQRSSWDKGL-WVSSEGPG----TANHR 253
Query: 197 ASFEVPAVGVVSQLQ-----LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
A F + A G+V + Q + + G+HN N + ++ G+ +A+ +++
Sbjct: 254 ADFWIDAEGLVREPQGALFAASALAMPGQHNLQN--LLLVTAAARQTGLPAKAIEASLRS 311
Query: 252 LRTPPHRM-QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
PHR+ Q+ H IQ ++ +DSKATN +A C GL + V+L GGQ K G
Sbjct: 312 FPGVPHRLEQLGH--IQQMSVYNDSKATNYDAACVGLKAVP-PPAVVLAGGQTK--QGDA 366
Query: 311 SNGFEKLIEPLNHHRC-VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN 369
S ++ L+ + C VI FG + + + +G S +N+ AV A +
Sbjct: 367 SGWLKQ----LDQNACAVILFGAGASELQELIKTSGFSGELHCCSNLNAAVTLAIPLGVE 422
Query: 370 GDA--IVLSPGCASFDEFRNFEHRGMVFQELAFS 401
A ++LSP CASFD++++FE RG F+ L S
Sbjct: 423 RQAACLLLSPACASFDQYQDFEARGEHFRSLISS 456
>gi|431795709|ref|YP_007222613.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Echinicola
vietnamensis DSM 17526]
gi|430786474|gb|AGA76603.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Echinicola
vietnamensis DSM 17526]
Length = 449
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 113/379 (29%), Positives = 177/379 (46%), Gaps = 37/379 (9%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+ EL+FA R +++A+TGTNGK+T ++ G++ +GGN+G +
Sbjct: 89 VIDELEFAYG-FSRG-RVIAITGTNGKTTTAMLTYHLMKTGGLDVGLGGNVGQSWASQLV 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTK 146
V+EVSS+Q++ + P V+V+ N+TPDHL+R+ M +Y +K
Sbjct: 147 QG--------DHDWWVLEVSSFQID-GFRSLKPKVAVLTNITPDHLDRYDYKMDHYVQSK 197
Query: 147 CHLFSHMVNTKLGLLPFGNQH-------LNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
L M + +QH +N K H +L IG G+ TE K +F
Sbjct: 198 LGLLKQMDEEDDFIYYREDQHTWQGMSQINVRPKIHEISLETIGKDGGLFNGTEVKL-NF 256
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ + + M + G HN N A S L G+ EAL + + + PHRM
Sbjct: 257 RNHMISIPER----EMAMKGNHNMLNVMCA--STAALLAGISEEALKAGLADFKNAPHRM 310
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319
++V R+++GVT+++DSK TN++AT L K + + GG K N +E L+
Sbjct: 311 ELV-RELEGVTFINDSKGTNVDATVYALSTFK-EPLIWIAGGVDK------GNDYETLMP 362
Query: 320 PLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
+ H + +I G + G+ M AV GD ++LSP
Sbjct: 363 VVKDHVKVLICLGKDNKKLKTAF--EGVVPEILETQEMAAAVQWGLEKGAKGDVVLLSPA 420
Query: 379 CASFDEFRNFEHRGMVFQE 397
CASFD F+N+E RG F+E
Sbjct: 421 CASFDLFKNYEDRGDQFKE 439
>gi|429748002|ref|ZP_19281229.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. oral taxon 380 str. F0488]
gi|429161719|gb|EKY04096.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. oral taxon 380 str. F0488]
Length = 444
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 103/383 (26%), Positives = 190/383 (49%), Gaps = 37/383 (9%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V+SE++FA+Q I + +TG+NGK+T + G++ +GGN+G
Sbjct: 84 EKGIAVISEIEFASQYTDSLI--VGITGSNGKTTTTLLTYHIFKEAGLQVGLGGNIGYSF 141
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKN 141
+E + + P + V +E+SS+Q++ ++F P ++V+LN+TPDHL+R+ +N
Sbjct: 142 AEL------VATENPPYYV--LEISSFQLD-GIEHFAPHIAVLLNITPDHLDRYDYKFEN 192
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF-- 199
Y +K + + + ++ + + + H I I+ E +F
Sbjct: 193 YINSKFRIAMNQTENDYLIYDADDEVITQWLSTHTIKSKLIP----FSIEKELPQGAFLK 248
Query: 200 ----EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
+ +++ + + + G+HN N A SV + + +L +++ +
Sbjct: 249 DNKIYIMLENQTTEIDVEEISLRGKHNIKNTMAA--SVAARLVNIRNNSLRESLKGFKGA 306
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
PHR++ V + ++GVT+V+DSKATN+ + L +K V ++GGQ K N +
Sbjct: 307 PHRLEEV-KVVEGVTYVNDSKATNVNSVYYALDTIKT-PIVWIVGGQDK------GNDYN 358
Query: 316 KLIEPLNHH--RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
L+ P H R ++ G I ++ N ++ +M +AV A+ A GD +
Sbjct: 359 SLL-PYIHEKVRAIVCLGVDNSPIIQSFHNTIGTL--VETRSMDEAVKLAQGFAQEGDTV 415
Query: 374 VLSPGCASFDEFRNFEHRGMVFQ 396
+LSP CASFD F+N+E RG +F+
Sbjct: 416 LLSPACASFDLFKNYEERGDLFK 438
>gi|417926599|ref|ZP_12569996.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
magna SY403409CC001050417]
gi|341588967|gb|EGS32337.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
magna SY403409CC001050417]
Length = 441
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 113/372 (30%), Positives = 189/372 (50%), Gaps = 19/372 (5%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
V+S+L+ A Q I IKI+A+TGTNGK+T + + +MLN G +A GN+G +
Sbjct: 83 EVVSDLELA-QRIFGDIKIVAITGTNGKTTTTSLMTKMLNDSGRKAISIGNIGVGMLWEI 141
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
++ S K F V+E SS+Q+E K+F P S ++N+TPDH++ H +M+NY K
Sbjct: 142 YN-----SDKDTF--FVIECSSFQLE-STKHFKPQYSCIINITPDHIDWHGSMQNYVNAK 193
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
++ + +L +++ E K + N+ I VK + K S
Sbjct: 194 KNVLKNQDENCYTVLNANDEYYEECKKFTKANVYDISTSKNVKRGSFIKDNSIYFSDSDC 253
Query: 207 VSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI 266
+ L ++K++G HNY N L IG++ +++ T+ HR++ V RD+
Sbjct: 254 DKIIDLKDVKLIGYHNYQNVLFCV--TLAKLIGINDDSIRETLMSFSGVEHRLEFV-RDL 310
Query: 267 QGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRC 326
GV + +DSK TN++A+ + + +IL GG K ++ N F I + +
Sbjct: 311 SGVKYYNDSKGTNVDASVKAIESFDKN-VIILAGGYDKKVS--LDNFF---IAGKDKFKA 364
Query: 327 VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR 386
+I G + L + G + V +MK AV A ++A +GD ++LSP AS+ +
Sbjct: 365 LILMGQTRDLFEQKAKEYGFK-NIYLVDDMKQAVTKANKIAESGDVVLLSPASASWGMYN 423
Query: 387 NFEHRGMVFQEL 398
N+E RG F++L
Sbjct: 424 NYEERGNEFKDL 435
>gi|404487173|ref|ZP_11022360.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Barnesiella
intestinihominis YIT 11860]
gi|404335669|gb|EJZ62138.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Barnesiella
intestinihominis YIT 11860]
Length = 447
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 105/391 (26%), Positives = 195/391 (49%), Gaps = 35/391 (8%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
+A +A L + ++SE++FA + +++ +TG+NGK+T +L G++
Sbjct: 78 RAPMIAALREKNIPIISEIEFAGRYT--RARMICITGSNGKTTTTLLTYHILKSAGLKVG 135
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+G L+ C + V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 136 LAGNVGKSLALQVATC--------DYDYYVIELSSFQLD--NMYDFKAHIAILLNITPDH 185
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFP 186
L+R+ M+NY K + + + P + L++ +K R+ A P
Sbjct: 186 LDRYDYKMENYVDAKFRIIRNQTEDDAFIYWNDDPVITEKLSQLPLKSQRYPFAETHE-P 244
Query: 187 GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
G + TE + + P + ++ + + GRHN +N+ A LS L+ V E +
Sbjct: 245 GTQAYTEDGALTIDTPEEKLT--METDELSLHGRHNLYNSMAAGLSACLLN--VKKEYVR 300
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVL 306
+ + HR++ V ++GV +++DSKATN+ + L +K V++LGG+ K
Sbjct: 301 KALSDFESVEHRLERVAS-VRGVQFINDSKATNVNSCWYALESMKT-PVVLILGGKDK-- 356
Query: 307 NGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVAN-MKDAVNHARR 365
G + + E+L+ + + ++ G + +P A+ MK+AV+ +
Sbjct: 357 -GNDYSEIEQLVR--DKVKALVFLGVDNSKLHAFFEGK---VPYITEASSMKEAVDKSFA 410
Query: 366 MATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
+A GD ++LSP CASFD F+++E RG F+
Sbjct: 411 LAAPGDTVLLSPCCASFDLFKSYEDRGDQFK 441
>gi|373500790|ref|ZP_09591163.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Prevotella micans
F0438]
gi|371951748|gb|EHO69591.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Prevotella micans
F0438]
Length = 443
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 103/387 (26%), Positives = 199/387 (51%), Gaps = 38/387 (9%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
+++ G R++SE++FA + S K++ +TG+NGK+T + + + G + + GN+G
Sbjct: 82 IIKQGTRIISEIEFAGRYT--SSKMICITGSNGKTTTTSLIYHIFRDAGYDVGLAGNIGR 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHKT- 138
L AL + + V+E+SS+Q++ N Y F ++++LN+TPDHL+R+
Sbjct: 140 SL--------ALQVALEPHEYYVIELSSFQLD--NMYDFRANIAILLNITPDHLDRYDNK 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+NYA +K + + + + + + ++ +FN+ + +P ++
Sbjct: 190 FENYADSKMRIIQNQTPDDSFIYWNDDPVIQKELR--KFNVKAV-CYPFSELKEHGSIGY 246
Query: 199 FEVPAVGVVSQ-----LQLHNMKVMGRHNYHNAAVAALSVLGLDI-GVDVEALNSTIEIL 252
E + + Q ++ ++ + G+HN +N+ A ++ +I G+ E + ++
Sbjct: 247 IE-QGMYTIEQPTPFNIEQESLSLTGKHNIYNSLAAGIAS---NISGIRKENIRKSLSDF 302
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
HR++ V + + GV +++DSKATN++A L ++ ++++GG+ K N
Sbjct: 303 PGVEHRLEKVCK-VAGVQYINDSKATNVDACWYALESMRT-PTILIIGGKDK------GN 354
Query: 313 GFEKLIEPLNHHRCVITFGYSGVLIWKTLVN-NGLSIPCFAVANMKDAVNHARRMATNGD 371
+E I+PL +C Y G K N + L +P +MK+ V+ +A GD
Sbjct: 355 DYEP-IKPLVKEKCT-ALVYLGADNRKLHENFDSLGLPVRDTHSMKECVDACYELARPGD 412
Query: 372 AIVLSPGCASFDEFRNFEHRGMVFQEL 398
++LSP CASFD F+N E RG F++L
Sbjct: 413 TVLLSPCCASFDLFKNMEDRGEQFKQL 439
>gi|384134946|ref|YP_005517660.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
gi|339289031|gb|AEJ43141.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
Length = 458
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 117/393 (29%), Positives = 193/393 (49%), Gaps = 46/393 (11%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+A LL++ ++++++ A+ R I A+TG+NGK+T T VG ML G V GN
Sbjct: 94 IAELLKASHVMVTDVEIASWFETR--PIYAITGSNGKTTTTTLVGAMLEASGYRPVVAGN 151
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P+ + +P + V+EVSS+Q++ F P +LN P HL+ H
Sbjct: 152 IGTPVCDVV--------DQPG-DLLVLEVSSFQLD-GTHTFHPRGGALLNFYPAHLDYHG 201
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNE------------AIKGHRFNLAWIGAF 185
T + Y K LF++ + +L + + + + +++G F+ +G
Sbjct: 202 TYEAYQQAKWKLFANQTPDDVAILNWDQELVRDRAGNLAARVRGFSLEGAPFDEG-VGVI 260
Query: 186 PGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
G + + S +P V Q+ L GRHN NAA AA L G VEA+
Sbjct: 261 DGTLVAVTGRERSPILP----VEQVALP-----GRHNLQNAAAAAAMAL--AAGASVEAV 309
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKV 305
+ + HR++ V R++ GV + +DSKATN +A L + V + GG +
Sbjct: 310 ARVLATFQGVEHRLEFV-REVSGVRYYNDSKATNPDAARQALRSFE-RGIVWIAGGLDRG 367
Query: 306 LNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR 364
++ F+ L+ ++ R + G + + L G+S+ FA A+M++AV A
Sbjct: 368 IS------FDPLLPDISGRVRAAVLLGETKEKLRDVLARAGVSMCVFA-ASMEEAVREAS 420
Query: 365 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
RMA GD ++LSP CAS+D F ++E RG +F+E
Sbjct: 421 RMAEPGDVVLLSPACASWDMFPSYEVRGSMFKE 453
>gi|419778037|ref|ZP_14303939.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
oralis SK10]
gi|383187790|gb|EIC80234.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
oralis SK10]
Length = 450
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 184/374 (49%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQRGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A A ++
Sbjct: 203 YVAAKWNIQNKMTADDFLVLNF-NQDLAKELATK--TQATVVPFSTLEKVDGAYLADGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAADEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSSFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V +IQGV + +DSK+TN+ AT L K +++ GG + N F++L+ +
Sbjct: 317 VD-EIQGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAAEKAGVA--YVDATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|212702355|ref|ZP_03310483.1| hypothetical protein DESPIG_00368 [Desulfovibrio piger ATCC 29098]
gi|212674233|gb|EEB34716.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Desulfovibrio
piger ATCC 29098]
Length = 436
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 178/386 (46%), Gaps = 62/386 (16%)
Query: 24 SGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
G +++E++ A + + +LAVTGT+GK+T V+ ML G+ F+GGN+G PLS
Sbjct: 103 EGTEILAEMELAWRALDGE-PVLAVTGTSGKTTTVSLAAAMLREQGLRVFLGGNIGTPLS 161
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
E S K V V+E SS+Q++ + F P V+VVLN++P+HL+ HK M+ Y
Sbjct: 162 EYLL-------SGEKADVLVLETSSFQLQCCST-FHPRVAVVLNISPNHLDYHKDMEEYI 213
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQHLNE--AIKGHRFNLAWI---GAFPGVKIDTEAKTAS 198
K LF L +L L E A G R WI G FP
Sbjct: 214 EAKFRLFRCQTEEDLAVL---APELEETAARFGLRARKVWIRPEGRFP------------ 258
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
+ + G+HN NA A + GV +E + + P+R
Sbjct: 259 ---------------DCPLFGQHNQFNAEAAWQAC--RPFGVTLENAARAVAAFKPLPNR 301
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
++ V R + GV +V+DSK T + A L + H +L GG+ K G + +G + L+
Sbjct: 302 LESVAR-VHGVLYVNDSKCTTVAALEVALEAMD-HPVHLLCGGKFK---GGDLDGMKDLL 356
Query: 319 EPLNHHRCVITFGYSGVLI---WKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
+ V +G S + W+ +V P M+DAV + GD ++L
Sbjct: 357 R--RKAKSVNLYGASREIFEAAWQGVV------PLCWHERMEDAVLALQDKVGEGDVVLL 408
Query: 376 SPGCASFDEFRNFEHRGMVFQELAFS 401
+P +SFD++RN+ RG F+ + S
Sbjct: 409 APATSSFDQYRNYVERGNDFKRIVGS 434
>gi|16078584|ref|NP_389403.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
subtilis subsp. subtilis str. 168]
gi|221309394|ref|ZP_03591241.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
subtilis subsp. subtilis str. 168]
gi|221313719|ref|ZP_03595524.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
subtilis subsp. subtilis str. NCIB 3610]
gi|221318643|ref|ZP_03599937.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
subtilis subsp. subtilis str. JH642]
gi|221322916|ref|ZP_03604210.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
subtilis subsp. subtilis str. SMY]
gi|402775765|ref|YP_006629709.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus subtilis
QB928]
gi|418033335|ref|ZP_12671812.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
subtilis subsp. subtilis str. SC-8]
gi|428279114|ref|YP_005560849.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
subtilis subsp. natto BEST195]
gi|430755998|ref|YP_007209778.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus subtilis
subsp. subtilis str. BSP1]
gi|452914705|ref|ZP_21963332.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus subtilis
MB73/2]
gi|417327|sp|Q03522.1|MURD_BACSU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|580932|emb|CAA78769.1| murD [Bacillus subtilis subsp. subtilis str. 168]
gi|2633891|emb|CAB13393.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus subtilis
subsp. subtilis str. 168]
gi|291484071|dbj|BAI85146.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
subtilis subsp. natto BEST195]
gi|351469483|gb|EHA29659.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
subtilis subsp. subtilis str. SC-8]
gi|402480948|gb|AFQ57457.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus subtilis
QB928]
gi|407958927|dbj|BAM52167.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Synechocystis
sp. PCC 6803]
gi|407964504|dbj|BAM57743.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Bacillus
subtilis BEST7003]
gi|430020518|gb|AGA21124.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus subtilis
subsp. subtilis str. BSP1]
gi|452117125|gb|EME07520.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus subtilis
MB73/2]
Length = 451
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 179/374 (47%), Gaps = 26/374 (6%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V +E++ A + S K + +TG+NGK+T T + +ML +A + GN+G
Sbjct: 95 KRGIPVWTEIELAYYLT--SAKFIGITGSNGKTTTTTLIYEMLKADSQKALIAGNIGTVA 152
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
SE A+H + V E+SS+Q+ + F P +S++LN+ HL+ H T +NY
Sbjct: 153 SEVAYHADG-------DEWIVTELSSFQL-MGTHAFRPEISLILNVFDAHLDYHHTRENY 204
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K ++ H + ++ NQ ++ A I F K + +
Sbjct: 205 EKAKQKVYLHQTASDKAIV---NQDDETVVRLAEAGKAEIVPFSVSKTLEQGAYVKDSMI 261
Query: 203 AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
+ L L + + G HN N +AA++V+ G EA+ + HR+Q V
Sbjct: 262 MFNGEAILPLEEVVLPGAHNLENI-LAAIAVVKT-AGASNEAVKKVLTSFTGVKHRLQYV 319
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322
+ G + +DSKATN+ AT L K VILL G NGF+ L +
Sbjct: 320 -TTVNGRKFYNDSKATNILATSKALSAFD--KPVILLAGGL-----DRGNGFDDLKPYMK 371
Query: 323 HHRCVITFGYSGVLIWKTLVNNGLSIP-CFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
H + V+TFG + + K + N L I V N++ AV+ A ++ GD I+LSP CAS
Sbjct: 372 HVKAVLTFGQTAPKLEK--LGNELGIQHVKRVDNVEQAVSAAFALSNEGDVILLSPACAS 429
Query: 382 FDEFRNFEHRGMVF 395
+D+F+ FE RG +F
Sbjct: 430 WDQFKTFEERGDMF 443
>gi|322389010|ref|ZP_08062580.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
parasanguinis ATCC 903]
gi|321144315|gb|EFX39723.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
parasanguinis ATCC 903]
Length = 449
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 109/378 (28%), Positives = 187/378 (49%), Gaps = 33/378 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LEKGIPVLTEVELAYLI--SDAPIIGITGSNGKTTTTTMIGEVLTAAGQGGLLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + + V V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASQVA-------QTATEKDVLVMELSSFQL-MGIEAFHPEIAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K +L +M + +L F NQ L + + K + I G + E
Sbjct: 203 YVAAKWNLQKNMTEKDVIVLNF-NQDLAKELATKTKARVLPFSTIEKVDGAYL--EDGLL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F+ AV ++ + V G HN N A+A ++V + GV+ E + T+ H
Sbjct: 260 KFKGEAV-----MRADELGVPGSHNVEN-ALATIAVAKVR-GVENEVIKETLSAFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R+Q V +IQGV + +DSK+TN+ AT L K +++ GG + N F++L
Sbjct: 313 RLQYVD-EIQGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDEL 365
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
+ + + ++ G S + + G+S ++ DA A +A+ GD ++LSP
Sbjct: 366 VPHIAGLKEMVILGESAPRVKRAADKAGVS--YVDATDVADAAKKAFDLASPGDVVLLSP 423
Query: 378 GCASFDEFRNFEHRGMVF 395
AS+D + NFE RG F
Sbjct: 424 ANASWDMYPNFEVRGDEF 441
>gi|255020011|ref|ZP_05292084.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
caldus ATCC 51756]
gi|254970540|gb|EET28029.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
caldus ATCC 51756]
Length = 454
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 115/365 (31%), Positives = 173/365 (47%), Gaps = 48/365 (13%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSS-KPKFQVAV 103
I A+TG+NGKSTV T +G+M G VGGNLG P + LP + P+ ++ V
Sbjct: 111 IAAITGSNGKSTVTTLLGEMAKAAGRRVAVGGNLGTPALD------LLPEAGAPEPELYV 164
Query: 104 VEVSSYQMEIPNKYFC----PTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLG 159
+E+SS+Q+ ++C P V+ +LNL+PDHL+ H M+ Y K +F M
Sbjct: 165 LELSSFQL-----HYCHALRPRVAAILNLSPDHLDWHGDMEAYLAAKARIFRTMGEGDTL 219
Query: 160 LLPFGNQHLNE-------AIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
+L + L ++ RF G P ++D A + P+ + + L
Sbjct: 220 VLNGEDPALQSLPAKAPAGVEIRRF-----GHTP--QLDAWADDLALHWPS---AAPMPL 269
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
++ + G+HN N V A +++ + + A+ R PHR+Q V R + GV +
Sbjct: 270 ADIHLPGKHNGEN--VLAAALMANALNLPETAIRQAAADFRGLPHRLQWVAR-VGGVDYY 326
Query: 273 DDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGY 332
DDSK TNL A+ + L G V++LGG AK + L E L R + G
Sbjct: 327 DDSKGTNLGASLRAIQALPG-PLVLILGGDAKGAD------LSPLREALRGQRGAVLLGK 379
Query: 333 SGVLIWKTLVNNGLSIPCFAVAN--MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEH 390
++ L S+P + M AV A MA GD ++LSP CAS D FR++
Sbjct: 380 DAAILEAILAG---SLPTLRIGEGGMSRAVRAAAAMAQPGDQVLLSPACASLDMFRDYRD 436
Query: 391 RGMVF 395
RG F
Sbjct: 437 RGRQF 441
>gi|406586882|ref|ZP_11061802.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
sp. GMD1S]
gi|419814577|ref|ZP_14339353.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
sp. GMD2S]
gi|404471639|gb|EKA16139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
sp. GMD2S]
gi|404473624|gb|EKA17955.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
sp. GMD1S]
Length = 450
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 108/377 (28%), Positives = 183/377 (48%), Gaps = 31/377 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQRGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ + M +L F NQ L + + + + K+D E
Sbjct: 203 YVAAKWNIQNKMTAGDFLVLNF-NQDLAKEL-ATKTQATVVPFSTQEKVDGAYLEDGQLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F V S++ V G HN N A+AA++V L GVD + + T+ HR
Sbjct: 261 FRGEVVMAASEI-----GVPGSHNVEN-ALAAIAVAKLR-GVDNQTIKETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q V +IQGV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQFVD-EIQGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
+ + ++ G S + + G++ ++ DA A +AT GD ++LSP
Sbjct: 367 PDITGLKKMVILGQSAERVKRAAEKAGVT--YVDATDIADATRKAYELATQGDVVLLSPA 424
Query: 379 CASFDEFRNFEHRGMVF 395
AS+D + NFE RG +F
Sbjct: 425 NASWDMYANFEVRGDLF 441
>gi|114798168|ref|YP_761703.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Hyphomonas
neptunium ATCC 15444]
gi|114738342|gb|ABI76467.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hyphomonas
neptunium ATCC 15444]
Length = 471
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 119/385 (30%), Positives = 179/385 (46%), Gaps = 53/385 (13%)
Query: 35 AAQVIPRSI--KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP-LSEAAFHCIA 91
A Q +P K++AVTGTNGKST +G +L G +A VGGN+G L AA H A
Sbjct: 106 AVQALPERARPKVVAVTGTNGKSTTTALIGHILKQAGRDARVGGNIGTGVLDLAALHSNA 165
Query: 92 LPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS 151
+ V+E+SSYQ+++ C VSV +NL+PDHL+RH M Y K +F
Sbjct: 166 ---------IYVLELSSYQLDLVKSLHC-DVSVFMNLSPDHLDRHGGMDGYQAAKMRIFQ 215
Query: 152 HMVNTKLGLLPFGNQHLNE-----AIKGHR--------FNLA-WIGAFPGVKIDTEAKTA 197
+ + + ++ F + + + KG + + L I A G D ++ A
Sbjct: 216 NQTDKNVAVIGFDDIYTQSIAIGLSAKGPQKVVQISSTYTLGKGISAVDGRLYDNQSGKA 275
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F VG + + ++GRHN+ NAA A + L G+D + + + H
Sbjct: 276 EF----VGKLDECP----ALIGRHNHQNAAAAYAACRAL--GLDPATIMAGLRTFPGLAH 325
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
RM+ V ++ G+ +++DSKATN +A L K + GG K + G L
Sbjct: 326 RMEAVG-ELDGIRFINDSKATNAQAAEQALRSFK--NIYWIAGGVPK------AEGIAPL 376
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN----GDAI 373
+ G + TL NG +P ++ AV A R A G I
Sbjct: 377 ASLFPNVTKAYLIGQAEDAFAATL--NG-KVPSQVCGSLDRAVEAAYRDAKAAGEPGAVI 433
Query: 374 VLSPGCASFDEFRNFEHRGMVFQEL 398
+ SP CASFD+F+++EHRG F+ L
Sbjct: 434 LFSPACASFDQFKDYEHRGDAFRTL 458
>gi|260893414|ref|YP_003239511.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ammonifex degensii
KC4]
gi|260865555|gb|ACX52661.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ammonifex degensii
KC4]
Length = 457
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 113/379 (29%), Positives = 188/379 (49%), Gaps = 27/379 (7%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
++G ++ EL+ A + ++AVTGTNGK+T G + G+ +V GN+G PL
Sbjct: 87 EAGIEIVGELELAFRFA--RAPVVAVTGTNGKTTTTALTGAIFQAAGLRTWVAGNIGLPL 144
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
SE + ++P+ + VVEVSS+Q+E F P V+V+LNLTPDHL+RH +Y
Sbjct: 145 SEV------VEEARPE-DILVVEVSSFQLET-TSTFKPVVAVILNLTPDHLDRHGDFNSY 196
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K +F+ + ++ +L + + + + + + V
Sbjct: 197 RQAKARIFARQTDKEVTVLNYDDPEVRNMAADSCGRVLFFSRRHKLATGVWVAKGEILVK 256
Query: 203 AVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
GV ++ ++ ++ + G HN NA A + + + V +E + + + HR+++
Sbjct: 257 WEGVEGKVTEVASLALPGAHNLENALAATAAAVAQN--VPLEVIGRVLREFKGVAHRLEL 314
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL--GGQAKVLNGQESNGFEKLIE 319
V +I GV +V+DSK TN EAT L + + C I+L GG+ K + F L
Sbjct: 315 VA-EINGVKYVNDSKGTNPEATIKAL---EAYDCPIVLIAGGRNK------GSDFRLLAS 364
Query: 320 PLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
+ + ++ G S L+ G+S A ++ DAV AR A GD ++LSP
Sbjct: 365 KMKEKVKALVLIGESAPLLAAQAKAAGVSDIVLA-RDLPDAVRRAREKARPGDVVLLSPA 423
Query: 379 CASFDEFRNFEHRGMVFQE 397
CAS+D FRN+E RG F++
Sbjct: 424 CASWDMFRNYEERGECFRQ 442
>gi|325280027|ref|YP_004252569.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Odoribacter
splanchnicus DSM 20712]
gi|324311836|gb|ADY32389.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Odoribacter
splanchnicus DSM 20712]
Length = 449
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 116/414 (28%), Positives = 199/414 (48%), Gaps = 46/414 (11%)
Query: 3 MLWLFLLEFQLKATGL-------ACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKS 55
M +F E +K+ G+ L + G V+SE++FA + K++ +TG+NGK+
Sbjct: 56 MDRIFAAELVVKSPGIPDTVPMVVALRERGIEVISEIEFAGR--HTEAKMVCITGSNGKT 113
Query: 56 TVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPN 115
T +L GI+A + GN+G L A ++ + VVE+SS+Q++
Sbjct: 114 TTTLLTCHILTTAGIDAGLAGNVGRSL--------AAQVAEDAHPLYVVELSSFQLDGMF 165
Query: 116 KYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG 174
F ++V+ N+TPDHL+R+ +NY +K + ++M L + ++ + ++
Sbjct: 166 D-FRADIAVLTNITPDHLDRYDHKFENYIDSKFRILNNMRPQDLFIYGLDSEAVGHRLRQ 224
Query: 175 HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHN---------MKVMGRHNYHN 225
R G + E T G +QL N + + GRHN +N
Sbjct: 225 VRVVPRMAGFIYADRSIWEKNTCRSGAWMEGEEVVVQLENRQFRIAKQEISIQGRHNVYN 284
Query: 226 AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCT 285
A A L+ + +GV E + + HR++ V R ++GVT+++DSKATN+++
Sbjct: 285 AMAAILACM--QVGVSDEKIAEGLRTFPQVEHRLETV-RVVEGVTYINDSKATNVDSAWY 341
Query: 286 GLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNN 344
L D + + GG K N + L + + + +I G + L++N
Sbjct: 342 AL-DSMTTPVIWIAGGTDK------GNDYSVLFDLVRQKVKVLICMGVDN----RKLIDN 390
Query: 345 GLSIPCFAVA--NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
S C V ++KDA+ AR+ A GD ++LSP CASFD F+N+E+RG +F+
Sbjct: 391 -FSGICQVVDTHSLKDALAAARQYAVEGDTVLLSPCCASFDLFKNYENRGELFK 443
>gi|91201183|emb|CAJ74243.1| similar to UDP-N-acetylmuramoylalanine D-glutamate ligase
[Candidatus Kuenenia stuttgartiensis]
Length = 476
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 109/371 (29%), Positives = 175/371 (47%), Gaps = 42/371 (11%)
Query: 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
+ VTG+NGKST T +G +L + +VGGN+G L + L KP + V+E
Sbjct: 132 IGVTGSNGKSTTTTLIGDILQQTSNKIWVGGNIGKSL------LLQLEEMKPA-DIVVLE 184
Query: 106 VSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
+SS+Q+E + + P +S+V N++P+HL+RHK + +Y K ++ H + +L +
Sbjct: 185 LSSFQLESLSSIKKSPCISIVTNISPNHLDRHKDIDSYIHAKKNIILHQKQSDSAILNYD 244
Query: 165 NQHLNEAIKGHRFNLAWI--------GAF---PGVKIDTEAKTASFEVPAVGVVSQLQLH 213
+ L K + W GAF + I + T S +P V
Sbjct: 245 DTELRTWGKECYGRVLWYSTQQPVENGAFRENEHIVISIDGNTIS--IPCVS-------- 294
Query: 214 NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
+K+ G HN HN V A S G + + + T+ HR++ V R+ +G+ + +
Sbjct: 295 KIKLPGDHNLHN--VLAASCATYLHGANKQTIEKTVTSFCGLEHRLEFV-REAKGIRYYN 351
Query: 274 DSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYS 333
DSKAT E+ +M K V++ GG K G + F + N+ + V+ G +
Sbjct: 352 DSKATTPESAIAAIMSFKN--SVLIAGGYDK---GSDFEEFAAICS--NYCKAVVLIGKT 404
Query: 334 GVLIWK--TLVNNGLSIPCFAVAN-MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEH 390
I + +L P VAN +KDA A + T G ++ SP CAS+D F N+E
Sbjct: 405 ANKIEELISLKKGEKEYPHVCVANTLKDAFQTANTLTTPGGVLLFSPACASYDMFNNYEE 464
Query: 391 RGMVFQELAFS 401
RG F+ + S
Sbjct: 465 RGKQFKNMVLS 475
>gi|193301875|gb|ABV90250.2| sporulation protein A [Bacillus subtilis subsp. sadata]
Length = 458
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 179/374 (47%), Gaps = 26/374 (6%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V +E++ A + S K + +TG+NGK+T T + +ML +A + GN+G
Sbjct: 95 KRGIPVWTEIELAYYLT--SAKFIGITGSNGKTTTTTLIYEMLKAGSQKALIAGNIGTVA 152
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
SE A+H + V E+SS+Q+ + F P +S++LN+ HL+ H T +NY
Sbjct: 153 SEVAYHA-------DGDEWIVTELSSFQL-MGTHAFRPEISLILNVFDAHLDYHHTRENY 204
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K ++ H + ++ NQ ++ A I F K + +
Sbjct: 205 EKAKQKVYLHQTASDKAIV---NQDDETVVRLAEAGKAEIVPFSVSKTLEQGAYVKDSMI 261
Query: 203 AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
+ L L + + G HN N +AA++V+ G EA+ + HR+Q V
Sbjct: 262 MFNGEAILPLEEVVLPGAHNLENI-LAAIAVVKT-AGASNEAVKKVLTSFTGVKHRLQYV 319
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322
+ G + +DSKATN+ AT L K VILL G NGF+ L +
Sbjct: 320 -TTVNGRKFYNDSKATNILATSKALSAFD--KPVILLAGGL-----DRGNGFDDLKPYMK 371
Query: 323 HHRCVITFGYSGVLIWKTLVNNGLSIP-CFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
H + V+TFG + + K + N L I V N++ AV+ A ++ GD I+LSP CAS
Sbjct: 372 HVKAVLTFGQTAPKLEK--LGNELGIQHVKRVDNVEQAVSAAFALSNEGDVILLSPACAS 429
Query: 382 FDEFRNFEHRGMVF 395
+D+F+ FE RG +F
Sbjct: 430 WDQFKTFEERGDMF 443
>gi|416999197|ref|ZP_11939866.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
parvula ACS-068-V-Sch12]
gi|333977350|gb|EGL78209.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
parvula ACS-068-V-Sch12]
Length = 456
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 116/375 (30%), Positives = 184/375 (49%), Gaps = 25/375 (6%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+SE++ A +V I+AVTGTNGK+T T + ++L G VGGN+G+ LSE
Sbjct: 92 GIDVVSEVELAYEV--SKSPIVAVTGTNGKTTTTTLLTKVLEGSGKPVHVGGNIGDSLSE 149
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
A+ S P V E+SSYQ+E KYF P +++LN+TPDHL RHKTM+NY
Sbjct: 150 VAY-------SMPAGGFLVAELSSYQLETI-KYFRPIGAIMLNITPDHLARHKTMENYIA 201
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K +F + ++T +L + + + ++ I V+ +
Sbjct: 202 AKERIFENQLSTDYLVLNIDDPVVADMEHRSPSHILKISQKKAVENGAYYADGQCYIAKD 261
Query: 205 GVVS-QLQLHNMKVMGRHNYHNAAVAALSVLGLD--IGVDVEALNSTIEILRTPPHRMQI 261
GV + ++ + G HN N L+V+ L +GV VE ++ I HR++
Sbjct: 262 GVAKFVIGNEDIHIPGSHNIEN----ILTVIALSHALGVPVETIHRIISEFHGVEHRLER 317
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V + I G+T+ +DSKATN+++ L + ++L GG K+ E +E +
Sbjct: 318 V-KTIDGITFYNDSKATNVDSVVKALESFD-QQVILLAGGHDKM------TPLEDFMELV 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ F ++T P + +MK+AV ++A GD ++LSP C+S
Sbjct: 370 KEKTKAVIFMGEAADRFETAAKEAGVKPIYRALSMKEAVEQGYKLAETGDIVLLSPACSS 429
Query: 382 FDEFRNFEHRGMVFQ 396
FD + FE RG F+
Sbjct: 430 FDWYSCFEERGDDFK 444
>gi|269798175|ref|YP_003312075.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Veillonella
parvula DSM 2008]
gi|269094804|gb|ACZ24795.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Veillonella parvula
DSM 2008]
Length = 456
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 184/376 (48%), Gaps = 27/376 (7%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+SE++ A +V I+AVTGTNGK+T T + ++L G VGGN+G+ LSE
Sbjct: 92 GIDVVSEVELAYEV--SKSPIVAVTGTNGKTTTTTLLTKVLEGSGKPVHVGGNIGDSLSE 149
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
A+ S P V E+SSYQ+E K+F P +++LN+TPDHL RHKTM+NY
Sbjct: 150 VAY-------SMPADGFLVAELSSYQLETI-KHFRPIGAIMLNITPDHLARHKTMENYIA 201
Query: 145 TKCHLFSHMVNTKLGLLPFGN---QHLNEAIKGHRFNLAWIGAFPGVKIDTEAK-TASFE 200
K +F + ++T +L + + H ++ A + K + +
Sbjct: 202 AKERIFENQLSTDYLVLNIDDPVVADMEHRAPSHILKISQKKAVENGAYYADGKCYIAKD 261
Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
A V++ +H + G HN N + + L +GV VE ++ I HR++
Sbjct: 262 GVAKFVIADEDIH---IPGSHNIEN--ILTVIALSYALGVPVETIHRIISEFHGVEHRLE 316
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP 320
V + I G+T+ +DSKATN+++ L + ++L GG K+ E +E
Sbjct: 317 RV-KTIDGITFYNDSKATNVDSVVKALESFD-QQVILLAGGHDKM------TPLEDFMEL 368
Query: 321 LNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 380
+ + F ++T P + +MKDAV ++A GD ++LSP C+
Sbjct: 369 VKEKTKAVIFMGEAADRFETAAKKAGVKPIYRALSMKDAVEKGYKLAETGDIVLLSPACS 428
Query: 381 SFDEFRNFEHRGMVFQ 396
SFD + FE RG F+
Sbjct: 429 SFDWYSCFEERGDDFK 444
>gi|291544563|emb|CBL17672.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruminococcus
champanellensis 18P13]
Length = 462
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 109/391 (27%), Positives = 177/391 (45%), Gaps = 33/391 (8%)
Query: 17 GLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG 76
L + G + SE++ + P +I VTG++GK+T T + +ML G + GG
Sbjct: 92 ALTAARKQGVIITSEMETFFDLCP--CRIYGVTGSDGKTTTTTLISEMLAKTGRRVYKGG 149
Query: 77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH 136
N+G L + L + + AVVE+SS+Q+ + P V+V+ N++P+HL+ H
Sbjct: 150 NIGKAL-------LPLIETIREEDAAVVELSSFQLISMRR--SPDVAVITNISPNHLDVH 200
Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI----GAFPGVKIDT 192
TM+ Y K +L +H +L N + R L W G +D
Sbjct: 201 GTMEEYIGCKVNLIAHQNAYSKTVLNLDNAQTAALAEQVRGRLLWFTRQQKPERGTFLDA 260
Query: 193 EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
E E + ++ ++++ G HN N A +V G V E + +
Sbjct: 261 EGWLCYAEAGKTQRI--VRAEDIRIPGLHNVENYLAAIAAVWG---EVPAETIVEVAKTF 315
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
HR++ V R++ GV W +DS AT+ GL + +++ GG K +
Sbjct: 316 GGVEHRIEFV-RELDGVKWYNDSIATSPTRVLAGLRSF-NQRLIVIAGGYDKKIP----- 368
Query: 313 GFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPC----FAVANMKDAVNHARRMA 367
FE + E +N + +I G + I K + + P A+M++AV A+ +A
Sbjct: 369 -FEPMAETVNQRVKILILMGVTAPKIEKAVTEDPSYDPAKLQIVHAASMEEAVQKAKELA 427
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
GD + LSP CASFD + NFE RG F+ L
Sbjct: 428 QPGDIVTLSPACASFDLYPNFEARGQHFKNL 458
>gi|405354263|ref|ZP_11023643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chondromyces
apiculatus DSM 436]
gi|397092506|gb|EJJ23264.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 455
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 117/384 (30%), Positives = 178/384 (46%), Gaps = 34/384 (8%)
Query: 24 SGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
+G V E++ A +++ S+ + +TGTNGKST G + + G FVGGNLG P S
Sbjct: 93 AGVAVWGEVELAGRLL-SSVPLFGITGTNGKSTTTALTGTLFSTGGKRTFVGGNLGRPFS 151
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
EAA + + VVE+SSYQ+E + P + +LNLTPDH++R+ + Y
Sbjct: 152 EAAM-------APEDWDALVVELSSYQLE-GIRALRPRGAAILNLTPDHIDRYPSHAAYG 203
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQH---LNEAIKGHRFNLAWIGA----FPGVKIDTEAKT 196
K +F ++ + L A K + + G P + A+
Sbjct: 204 EAKARIFQSQQAGDFAVVNADDADVLGLARAAKAPVYGFSLTGTPVADAPKLAGLAVAEP 263
Query: 197 ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTIEILRTP 255
F + +G L N + G HN NA AAL LG GV A+ + ++
Sbjct: 264 GGFRLAFLG--EHYTLTNRALRGAHNAQNAMAAALLARLG---GVASGAVQAGLDGYPGL 318
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
PHR++ V R + GV WV+DSKATN+++ L G +I GG+ K +
Sbjct: 319 PHRLESV-RMLDGVEWVNDSKATNVDSVLVALRAFAGGVWLI-AGGKGK------GAPYA 370
Query: 316 KLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 374
+++ V+T G + + + A + AV AR + GD ++
Sbjct: 371 PMVDAGRGKVNGVLTIGDDADTLAQAYAG---AAQVHACGTLDRAVAKARELTRPGDTVL 427
Query: 375 LSPGCASFDEFRNFEHRGMVFQEL 398
LSP CASFD+F+NFE RG F+ L
Sbjct: 428 LSPACASFDQFKNFEDRGESFKRL 451
>gi|315612789|ref|ZP_07887700.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis ATCC 49296]
gi|419782972|ref|ZP_14308768.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
oralis SK610]
gi|315314899|gb|EFU62940.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis ATCC 49296]
gi|383182706|gb|EIC75256.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
oralis SK610]
Length = 450
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 109/378 (28%), Positives = 184/378 (48%), Gaps = 33/378 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTA 197
Y K ++ + M +L F NQ L + + A + F + K+D E
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLASK--TQATVVPFSTLEKVDGAYLEDGQL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F V S++ V G HN N A+A ++V L GVD + + T+ H
Sbjct: 260 YFRGEVVMAASEI-----GVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSSFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R+Q V +IQGV + +DSK+TN+ AT L K +++ GG + N F++L
Sbjct: 313 RLQFVD-EIQGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDEL 365
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
+ + + ++ G S + + G++ ++ DA A +AT GD ++LSP
Sbjct: 366 VPDITGLKKMVILGQSAERVKRAADKAGVA--YVDATDIADATRKAYELATQGDVVLLSP 423
Query: 378 GCASFDEFRNFEHRGMVF 395
AS+D + NFE RG +F
Sbjct: 424 ANASWDMYANFEARGDLF 441
>gi|120597219|ref|YP_961793.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
sp. W3-18-1]
gi|120557312|gb|ABM23239.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
W3-18-1]
Length = 439
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 184/383 (48%), Gaps = 43/383 (11%)
Query: 22 LQSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+ +++ FA ++ R ++ +TG+NGKSTV T VG+ML G+ VGGN+G
Sbjct: 87 LDMGIEVIGDVELFAREIADRKPCVIGITGSNGKSTVTTLVGEMLREAGMAVAVGGNIGV 146
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P AL ++ V+E+SS+Q+E + C S LN+T DH++R+ M
Sbjct: 147 P---------ALDLLSENAEIFVLELSSFQLETTHSLNC-VASTCLNVTEDHMDRYSDMD 196
Query: 141 NYALTKCHLFSH---MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K L+ ++ + L + +N+ + F LA D++
Sbjct: 197 AYRKAKLRLYHQSRSIIFNRDDALTIPTEPMNQ----NSFGLAPPEGDEWGICDSKIYHG 252
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
E+ + VS ++G HN+ N +AA++++ +GVD + + H
Sbjct: 253 RSEIMPITEVS--------LIGSHNHAN-LLAAMALV-YAVGVDKQVMAKVARTFTGLSH 302
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKVLNGQESNGFE 315
R ++V GVT+V+DSKATN+ AT L L H +++ GG K + F
Sbjct: 303 RCEVVGIK-GGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDGKGAD------FS 355
Query: 316 KLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
L+EPL+ +IT G G I L V +M AV A +AT+GD ++L
Sbjct: 356 PLVEPLSKVTHLITLGRDGNKIA------ALKEGAIKVDSMAAAVAKAAALATSGDIVLL 409
Query: 376 SPGCASFDEFRNFEHRGMVFQEL 398
SP CAS D + NF RG F+ L
Sbjct: 410 SPACASLDMYSNFMARGDDFRNL 432
>gi|409201093|ref|ZP_11229296.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
flavipulchra JG1]
Length = 440
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 112/385 (29%), Positives = 187/385 (48%), Gaps = 41/385 (10%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+A + G V+ +++ A++ R ++AVTG+NGKSTVVT ++L G++ +GGN
Sbjct: 88 VAAAIAEGVEVIGDIELFARLNTR--PVIAVTGSNGKSTVVTLATEVLKAAGLKVGLGGN 145
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G + L + V V+E+SS+Q+E + C + +++LN+T DH++R+
Sbjct: 146 IGTSV---------LSLLEQPHDVYVLELSSFQLETTHSLACLS-AMILNITEDHMDRYP 195
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI-GAFPGVKIDTEAKT 196
+ Y K ++ H+ + H A G +++ G + + D EA
Sbjct: 196 DFQAYIEAKQRIYQHVEHIVFN----AEDHYTFAQHGQGSSVSLTEGDYHLMTFDGEAYF 251
Query: 197 ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
A + P + V + ++GRHN NA + + + ++A S P
Sbjct: 252 AHKQTPLLAV------KTLAMVGRHNQFNALAVLALLAPMQL--SMQAFASAFASFTGLP 303
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL-KGHKCVILL-GGQAKVLNGQESNGF 314
HR Q+V D+ V + +DSKATN+ +T + L G K +IL+ GG AK +
Sbjct: 304 HRCQLV-ADVAEVRYFNDSKATNVGSTVAAIDSLASGRKNIILIVGGDAKGAD------L 356
Query: 315 EKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
L PL H + + FG G L N+ V N+++AV A+ +ATNGD +
Sbjct: 357 SPLKTPLTTHCKALFCFGQDGAQFMPLLRNS------HQVNNLEEAVLAAKTIATNGDIV 410
Query: 374 VLSPGCASFDEFRNFEHRGMVFQEL 398
+L+P CAS D + N+ RG F L
Sbjct: 411 LLAPACASIDMYPNYMARGDEFVRL 435
>gi|303250495|ref|ZP_07336692.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|307251537|ref|ZP_07533444.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307256037|ref|ZP_07537825.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|302650483|gb|EFL80642.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|306861001|gb|EFM93007.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306865459|gb|EFM97354.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
Length = 436
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 107/364 (29%), Positives = 172/364 (47%), Gaps = 49/364 (13%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG NGKSTV T V +M GI+ +GGN+G P+ L ++++ V+
Sbjct: 108 IIAITGANGKSTVTTLVTEMAKQAGIKVGMGGNIGVPV---------LSLLNDEYELFVL 158
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E + + +LN++ DH++R+ +++ Y L K ++ + +VN +
Sbjct: 159 ELSSFQLETTSS-LNAVAATILNISEDHMDRYNNSLEEYRLAKLRIYDNAENVIVNGEDR 217
Query: 160 L-LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
L P Q + + I+ +N + T + G + + M +
Sbjct: 218 LTYPLETQAVKKLIRFAEYNAEY--------------TMRNGILYSGDDAIIPTKEMLIS 263
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
GRHN NA A G+ E + +++ HR Q V + GV WV+DSKAT
Sbjct: 264 GRHNEMNALAAMALAE--AAGIPREGIVKALQVYGGLDHRFQAVKTN-DGVRWVNDSKAT 320
Query: 279 NLEATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVIT--FGYSGV 335
N+ +T L L+ +LLGG K + E ++PL + ++ FG G
Sbjct: 321 NVGSTVAALNGLQVAGTLYLLLGGDGKAADFSE-------LKPLINKPNIVCYCFGQDGA 373
Query: 336 LIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
+ LS V M+ A+ R GD ++LSP CAS D+F+NFE RG VF
Sbjct: 374 QLA------ALSSQSVLVETMQQAIEQIRPQLKKGDMVLLSPACASLDQFKNFEERGQVF 427
Query: 396 QELA 399
+LA
Sbjct: 428 VKLA 431
>gi|410451668|ref|ZP_11305670.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira sp.
Fiocruz LV3954]
gi|410014434|gb|EKO76564.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira sp.
Fiocruz LV3954]
Length = 462
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 118/389 (30%), Positives = 181/389 (46%), Gaps = 48/389 (12%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V SE+D KI+ VTGT+GKST + +L + GGNLG P +
Sbjct: 89 VFSEIDLGRFFFKG--KIIGVTGTDGKSTTTSLTAHLLRKDFSDLREGGNLGTPFTSFCK 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
I+L AV+E+SSYQ++ N VSV LNL PDHLERH TM+NY K
Sbjct: 147 KPISL---------AVLELSSYQLDDSNPLHL-DVSVFLNLAPDHLERHTTMENYFQAKL 196
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
+ + + N L+ ++E IK NLA T A A + + +
Sbjct: 197 KI-ADLQNENHFLI------VSEKIKESILNLASFRCKLLSFGRTSASDAFLDENSSKIG 249
Query: 208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLD-IGVDVEALNSTIEILRTPPHRMQIVHRDI 266
+ ++++ HN A S+L + IG E++ + I + R PHR QI
Sbjct: 250 TSKFVYDISGFHLPGTHNGENLAASILAAEAIGGKPESIQAQIPLFRGLPHRFQIAGEK- 308
Query: 267 QGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAKVLNGQESNGFEKLIEPLNHH- 324
QG+++++DSK+TNL + G+ K + ++LGG+ K QE L + LN
Sbjct: 309 QGISFINDSKSTNLHSMLAGMSTWKNLDRTCLILGGRPK----QEDP--RPLYDFLNRKI 362
Query: 325 RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAV----------------NHARRMAT 368
CV+ G + W+ + N + F+V ++ +A N R+
Sbjct: 363 GCVVLIGEARSF-WEEGIRNAIGEKLFSVESLNEAFEIFKKGNIVSEPSRPSNRKIRLTN 421
Query: 369 NGD--AIVLSPGCASFDEFRNFEHRGMVF 395
+ + ++V SP CASFD+++NFE RG F
Sbjct: 422 SAEITSVVFSPACASFDQYKNFEERGNHF 450
>gi|451975660|ref|ZP_21926844.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
alginolyticus E0666]
gi|451930403|gb|EMD78113.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
alginolyticus E0666]
Length = 437
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 117/400 (29%), Positives = 183/400 (45%), Gaps = 69/400 (17%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ +L+ G V+ +++ A + + + +A+TG+NGKSTV G M G++ VGGN
Sbjct: 85 IQAVLEKGTTVVGDIELFAWAVQKPV--IAITGSNGKSTVTDLTGVMAKAAGLDVGVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P AL + + V+E+SS+Q+E + + LNL+ DH++R++
Sbjct: 143 IGVP---------ALDLLEHDADLYVLELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYQ 192
Query: 138 TMKNYALTKCHLFSH----MVN---------TKLGLLPFG--NQHLNEAIKGHRFNLAWI 182
M +Y K +F H +VN ++ L+ FG NQ + G+R W+
Sbjct: 193 GMSDYRQAKLRIFDHADLAVVNRDDQETFPDAEMPLVTFGSDNQDFGLEVDGNR---TWL 249
Query: 183 GAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAV--AALSVLGLDIGV 240
+D + + + +K++G+HN NA V A L G+D
Sbjct: 250 -------LDHGQRVVASD-------------ELKLVGKHNLSNALVVLALLKAAGVDYHN 289
Query: 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILL 299
+ AL + + HR Q+V D QGV WV+DSKATN+ +T L L+ K +L+
Sbjct: 290 ALNALKNYTGL----THRCQVV-ADNQGVKWVNDSKATNIASTMAALSGLESTGKLYLLV 344
Query: 300 GGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDA 359
GG K G + + + + LN C FG G L M+D
Sbjct: 345 GGVGK---GADFSPLKPIFATLNLQLCC--FGVDGDEFMP------LHESAIRFDTMEDV 393
Query: 360 VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
+ GD ++LSP CASFD+F NF RG F LA
Sbjct: 394 IQQVSSQLKPGDMVMLSPACASFDQFDNFMARGDAFAALA 433
>gi|325578823|ref|ZP_08148870.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
parainfluenzae ATCC 33392]
gi|325159647|gb|EGC71779.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
parainfluenzae ATCC 33392]
Length = 437
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 119/410 (29%), Positives = 193/410 (47%), Gaps = 53/410 (12%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA L +G V+ +++ + + I + +TG+NGKSTV
Sbjct: 63 WLLESDIIVISPGLAVKIPEIQTALSAGVEVIGDIELFCRAATKPI--VGITGSNGKSTV 120
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M GI+ +GGN+G P AL + V+E+SS+Q+E N
Sbjct: 121 TTLVYEMAKAAGIKVGMGGNIGIP---------ALSLLNEDCDLYVLELSSFQLETTNS- 170
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL---LPFGNQHLNEAIKG 174
+ VLN+T DH++R+ +++Y K ++ + + L L FG N+A K
Sbjct: 171 LKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIYYNAETAVVNLEDKLTFGEGE-NQAKK- 228
Query: 175 HRFNLAWIGAFPGVKIDTEAKTAS---FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
+ +F + D KT + + + V+ L ++GRHNY N + A
Sbjct: 229 -------VVSFAENQADYWLKTENGKQYLMAKEEVI--LPCDEAILVGRHNYMN--ILAA 277
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L + +++EA+ + + HR Q+ ++ GV W++DSKATN+ +T L L
Sbjct: 278 TALAQAVDINLEAIRIALRQFKGLDHRFQLAYQ-TNGVRWINDSKATNVGSTVAALAGLY 336
Query: 292 GHKCV-ILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFGYSGVLIWKTLVNNGLSIP 349
+ +LLGG K + F +L + +N H FG G K L LS
Sbjct: 337 VEGTLHLLLGGDGKGAD------FSELADLINQPHISTYCFGRDG----KQLA--ALSSQ 384
Query: 350 CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
M+ A++ R +GD ++LSP CAS D+F +FE RG F LA
Sbjct: 385 SHLFETMQQAISFLRPRLKSGDMVLLSPACASLDQFTSFEKRGEEFTRLA 434
>gi|388543158|ref|ZP_10146449.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
sp. M47T1]
gi|388278470|gb|EIK98041.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
sp. M47T1]
Length = 448
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 116/363 (31%), Positives = 174/363 (47%), Gaps = 41/363 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGDMAAAAGKRVAVGGNLGTP---------ALDLLADDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS---HMVNTKLGLL 161
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +V + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVYNRQDAL 220
Query: 162 PFGNQHLNEAIKGHRFNL--AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMG 219
+ E + F L AF G++ + K +FE + VS+L K+ G
Sbjct: 221 T--RPLMGEGLPCWTFGLNKPDFKAF-GLREEDGQKYLAFEFQNLMPVSEL-----KIRG 272
Query: 220 RHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATN 279
HN A A LG +G+ E + +T+ HR Q + R+ GV++ DDSKATN
Sbjct: 273 SHN--QANALAALALGHAVGLPFEPMLATLRTFAGLAHRCQWL-RERNGVSYYDDSKATN 329
Query: 280 LEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSG 334
+ A + D+ G K V++ GG K + F L P+ H R V+ G
Sbjct: 330 VGAALAAIEGLGADIDG-KLVLVAGGDGKGAD------FSALKAPVAAHCRAVVLLGRDA 382
Query: 335 VLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMV 394
LI L G +P V + +AV + GDA++LSP CAS D F+N+E RG +
Sbjct: 383 ELIAAVL---GDDVPLVRVNTLDEAVEQCAALTQPGDAVLLSPACASLDMFKNYEERGRL 439
Query: 395 FQE 397
F +
Sbjct: 440 FAQ 442
>gi|393782275|ref|ZP_10370460.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
salyersiae CL02T12C01]
gi|392673546|gb|EIY67005.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
salyersiae CL02T12C01]
Length = 444
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 108/393 (27%), Positives = 192/393 (48%), Gaps = 51/393 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKEQGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ K ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEDKHDYYIIELSSFQLD--NMYDFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + P + L + +K H + A + GV E
Sbjct: 190 MQNYIDAKFRITRNQTQDDAFIFWNDDPIIKRELEKHGLKAHLYPFAAVKE-DGVIAYVE 248
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTIEIL 252
P + ++ + + G+HN +N+ A +S L G+ + + +
Sbjct: 249 DHEVKINEP---IAFNMEQEKLALTGQHNLYNSLAAGISANLA---GITKDDIRKALSDF 302
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
+ HR++ V R + G+ +++DSKATN+ + L + K V++LGG+ K N
Sbjct: 303 KGVEHRLEKVAR-VGGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK------GN 354
Query: 313 GFEKLIEPLNHHRCVITFGYSGVLIWKTLVN-------NGLSIPCFAV-ANMKDAVNHAR 364
+ + IE L +C L++ L N + L +P V MKDAV A
Sbjct: 355 DYTE-IEDLVREKC-------SALVYLGLHNEKLHAFFDRLGLPVADVQTGMKDAVEAAY 406
Query: 365 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
++A G+ ++LSP CASFD F+++E RG F+E
Sbjct: 407 KLAKKGETVLLSPCCASFDLFKSYEDRGDQFKE 439
>gi|297616979|ref|YP_003702138.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Syntrophothermus
lipocalidus DSM 12680]
gi|297144816|gb|ADI01573.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Syntrophothermus
lipocalidus DSM 12680]
Length = 456
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 113/385 (29%), Positives = 192/385 (49%), Gaps = 26/385 (6%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
++++G V+ E++ A + +++I+A+TGTNGK+T FV ++L+ G+ GN+G
Sbjct: 88 VIEAGTPVIGEIELAYHLKNDAVEIVAITGTNGKTTTTAFVAEILDKSGVNTAACGNIGV 147
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
PL + + V VEVSS+Q+E + F P V+ VLN+TPDHL+RH TM+
Sbjct: 148 PLISVI--------DEIEHGVVSVEVSSFQLETI-REFHPRVAAVLNITPDHLDRHGTME 198
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGN---QHLNEAIKGHRFNLAWIGAFP-GVKIDTEAKT 196
Y K + S+ +L + + + L K + P GV ++
Sbjct: 199 QYVEAKAKILSNQGPDDFSVLNYEDAWVRRLKTEAKSQVIFFSTARRLPRGVYVEDGKIK 258
Query: 197 ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
A V + + N+ + G HN N A + L GV + + T+ +
Sbjct: 259 ARLYDDEVVICPR---ENVALRGEHNLENVLCAVGIAIAL--GVKPDTIADTLRSFKGVR 313
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK 316
HR++ V R + GV +V+DSK TN E+T L + +++ GG+ K G + +
Sbjct: 314 HRLEEVRR-VNGVLYVNDSKGTNPESTIKALQAFQ-EPVILIAGGRNK---GADFTVLSR 368
Query: 317 LIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLS 376
+I+ H ++ G + +LI + ++ G A + ++AV A+ +A GD ++LS
Sbjct: 369 VIKDKVRH--LVLVGEASLLIREKVLEQGFQHIDVA-KSFEEAVYRAKELARPGDVVLLS 425
Query: 377 PGCASFDEFRNFEHRGMVFQELAFS 401
P CAS+D F +FE RG +F +L S
Sbjct: 426 PACASWDMFNSFEERGDLFCQLVNS 450
>gi|386312141|ref|YP_006008306.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
putrefaciens 200]
gi|319424766|gb|ADV52840.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella
putrefaciens 200]
Length = 439
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 184/383 (48%), Gaps = 43/383 (11%)
Query: 22 LQSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+ +++ FA ++ R ++ +TG+NGKSTV T VG+ML G+ VGGN+G
Sbjct: 87 LDMGIEVIGDVELFAREIADRKPCVIGITGSNGKSTVTTLVGEMLREAGMAVAVGGNIGV 146
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P AL ++ V+E+SS+Q+E + C S LN+T DH++R+ M
Sbjct: 147 P---------ALDLLSENAEIFVLELSSFQLETTHSLNC-VASTCLNVTEDHMDRYSDMD 196
Query: 141 NYALTKCHLFSH---MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K L+ ++ + L + +N+ + F LA D++
Sbjct: 197 AYRKAKLRLYHQSRSIIFNRDDALTIPTEPMNQ----NSFGLAPPEGDEWGICDSKIYHG 252
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
E+ + VS ++G HN+ N +AA++++ +GVD + + H
Sbjct: 253 RSEIMPITEVS--------LIGSHNHAN-LLAAMALV-YAVGVDKQVMAKVARTFTGLSH 302
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKVLNGQESNGFE 315
R ++V GVT+V+DSKATN+ AT L L H +++ GG K + F
Sbjct: 303 RCEVVGIK-GGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDGKGAD------FS 355
Query: 316 KLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
L+EPL+ +IT G G I L V +M AV A +AT+GD ++L
Sbjct: 356 PLVEPLSKVTHLITLGRDGNKIA------ALKEGAIKVDSMAAAVAKAAALATSGDIVLL 409
Query: 376 SPGCASFDEFRNFEHRGMVFQEL 398
SP CAS D + NF RG F+ L
Sbjct: 410 SPACASLDMYSNFMARGDDFRNL 432
>gi|299147132|ref|ZP_07040199.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
3_1_23]
gi|298515017|gb|EFI38899.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
3_1_23]
Length = 444
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 110/390 (28%), Positives = 192/390 (49%), Gaps = 45/390 (11%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKAQGTPVISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEDYHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHL-NEAIKGHRFNLAWI---GAFPGVKI 190
M+NY K + + + P Q L +K H + A + GA V+
Sbjct: 190 MQNYIDAKFRITQNQTPDDAFIFWNDDPIIRQELAKHGLKAHLYPFAAVKEDGAIAYVE- 248
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTI 249
D E K + ++ + + G+HN +N+ A +S L G+ E + +
Sbjct: 249 DHEVKITE------PIAFNMEQEELALTGQHNLYNSLAAGISANLA---GIAKENIRKAL 299
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
+ HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K
Sbjct: 300 SDFKGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK----- 352
Query: 310 ESNGFEKLIEPLNHHRC--VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA 367
N + + IE L +C ++ G + + GL + MKDAV A ++A
Sbjct: 353 -GNDYTE-IEDLVREKCSALVYLGLHNEKLHEFFDRFGLPVADVQTG-MKDAVEAAYKLA 409
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
G+A++LSP CASFD F+++E RG F+E
Sbjct: 410 KKGEAVLLSPCCASFDLFKSYEDRGDQFKE 439
>gi|420149877|ref|ZP_14657045.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. oral taxon 335 str. F0486]
gi|394753074|gb|EJF36679.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. oral taxon 335 str. F0486]
Length = 444
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/383 (26%), Positives = 189/383 (49%), Gaps = 37/383 (9%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V+SE++FA+Q I + +TG+NGK+T + G++ +GGN+G
Sbjct: 84 EKGIAVISEIEFASQYTDSLI--VGITGSNGKTTTTLLTYHIFKEAGLQVGLGGNIGYSF 141
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKN 141
+E + + P + V +E+SS+Q++ ++F P ++V+LN+TPDHL+R+ +N
Sbjct: 142 AEL------VATENPLYYV--LEISSFQLD-GIEHFAPHIAVLLNITPDHLDRYDYKFEN 192
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF-- 199
Y +K + + + ++ + + + H I I+ E +F
Sbjct: 193 YINSKFRIAMNQTENDYLIYDADDEVITQWLSTHTIKSKLIP----FSIEKELPQGAFLK 248
Query: 200 ----EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
+ +++ + + + G+HN N A SV + + +L +++ +
Sbjct: 249 DNKIYIMLENQTTEIDVEEISLRGKHNIKNTMAA--SVAARLVNIRNNSLRESLKGFKGA 306
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
PHR++ V + + GVT+V+DSKATN+ + L +K V ++GGQ K N +
Sbjct: 307 PHRLEEV-KVVDGVTYVNDSKATNVNSVFYALDTIK-TPIVWIVGGQDK------GNDYN 358
Query: 316 KLIEPLNHH--RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
L+ P H R ++ G I ++ N ++ +M +AV A+ A GD +
Sbjct: 359 SLL-PYVHEKVRAIVCLGVDNSPIIQSFYNTIGTL--VETRSMDEAVKLAQGFAQEGDTV 415
Query: 374 VLSPGCASFDEFRNFEHRGMVFQ 396
+LSP CASFD F+N+E RG +F+
Sbjct: 416 LLSPACASFDLFKNYEERGDLFK 438
>gi|146291592|ref|YP_001182016.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
putrefaciens CN-32]
gi|145563282|gb|ABP74217.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
putrefaciens CN-32]
Length = 439
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 184/383 (48%), Gaps = 43/383 (11%)
Query: 22 LQSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+ +++ FA ++ R ++ +TG+NGKSTV T VG+ML G+ VGGN+G
Sbjct: 87 LDMGIEVIGDVELFAREIADRKPCVIGITGSNGKSTVTTLVGEMLREAGMAVAVGGNIGV 146
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P AL ++ V+E+SS+Q+E + C S LN+T DH++R+ M
Sbjct: 147 P---------ALDLLSENAEIFVLELSSFQLETTHSLNC-VASTCLNVTEDHMDRYSDMD 196
Query: 141 NYALTKCHLFSH---MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K L+ ++ + L + +N+ + F LA D++
Sbjct: 197 AYRKAKLRLYHQSRSIIFNRDDALTIPTEPMNQ----NSFGLAPPEGDEWGICDSKIYHG 252
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
E+ + + + ++G HN+ N +AA++++ +GVD + + H
Sbjct: 253 RSEI--------MPITEVSLIGSHNHAN-LLAAMALV-YAVGVDKQVIAKVARTFTGLSH 302
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKVLNGQESNGFE 315
R ++V GVT+V+DSKATN+ AT L L H +++ GG K + F
Sbjct: 303 RCEVVGIK-GGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDGKGAD------FS 355
Query: 316 KLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
L+EPL+ +IT G G I L V +M AV A +AT+GD ++L
Sbjct: 356 PLVEPLSKVTHLITLGRDGNKIA------ALKEGAIKVDSMAAAVAKAAALATSGDIVLL 409
Query: 376 SPGCASFDEFRNFEHRGMVFQEL 398
SP CAS D + NF RG F+ L
Sbjct: 410 SPACASLDMYSNFMARGDDFRNL 432
>gi|321315285|ref|YP_004207572.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
subtilis BSn5]
gi|320021559|gb|ADV96545.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
subtilis BSn5]
Length = 451
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 179/374 (47%), Gaps = 26/374 (6%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V +E++ A + S K + +TG+NGK+T T + +ML +A + GN+G
Sbjct: 95 KRGIPVWTEIELAYYLT--SAKFIGITGSNGKTTTTTLIYEMLKAGSQKALIAGNIGTVA 152
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
SE A+H + V E+SS+Q+ + F P +S++LN+ HL+ H T +NY
Sbjct: 153 SEVAYHADG-------DEWIVTELSSFQL-MGTHAFRPEISLILNVFDAHLDYHHTRENY 204
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K ++ H + ++ NQ ++ A I F K + +
Sbjct: 205 EKAKQKVYLHQTASDKAIV---NQDDETVVRLAEAGKAEIVPFSVSKTLEQGAYVKDSMI 261
Query: 203 AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
+ L L + + G HN N +AA++V+ G EA+ + HR+Q V
Sbjct: 262 MFNGEAILPLEEVVLPGAHNLENI-LAAIAVVKT-AGASNEAVKKVLTSFTGVKHRLQYV 319
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322
+ G + +DSKATN+ AT L K VILL G NGF+ L +
Sbjct: 320 -TTVNGRKFYNDSKATNILATSKALSAFD--KPVILLAGGL-----DRGNGFDDLKPYMK 371
Query: 323 HHRCVITFGYSGVLIWKTLVNNGLSIP-CFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
H + V+TFG + + K + N L I V N++ AV+ A ++ GD I+LSP CAS
Sbjct: 372 HVKAVLTFGQTAPKLEK--LGNELGIQHVKRVDNVEQAVSAAFALSNEGDVILLSPACAS 429
Query: 382 FDEFRNFEHRGMVF 395
+D+F+ FE RG +F
Sbjct: 430 WDQFKTFEERGDMF 443
>gi|371778096|ref|ZP_09484418.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaerophaga sp.
HS1]
Length = 450
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 115/389 (29%), Positives = 200/389 (51%), Gaps = 37/389 (9%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
+ Q G ++SE++FA + K++ +TG+NGK+T T+ M+ G + + GN+G
Sbjct: 83 IRQKGIPIISEIEFAGRF--SKAKMIGITGSNGKTTTATWTYHMIKKGGKDVRLAGNIGT 140
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TM 139
L A H I SS P ++ V+E+SS+Q+E + C V+V+ NL+PDHL+R+
Sbjct: 141 SL---ARHLI---SSDP--ELFVLELSSFQLEDMYDFKC-DVAVITNLSPDHLDRYDYRF 191
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG-AFPGVKIDTEAKTAS 198
+ Y K + ++ + K + + N H E +K ++ + G +P D + A
Sbjct: 192 EKYVDAKFRILNN--HDKQSVFIY-NAHDQEIMK-RMGDMQYPGIRYPFALSDVYGQGAC 247
Query: 199 FEVPAVGVVSQLQ------LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
E + V+ L+ L+ + + G+HN N A+L+ L +D ++A+ ++
Sbjct: 248 VEYEQM-VIKTLENRVTFPLNQLALSGKHNICNGMAASLAALSVD--TPIQAVIEGLKDF 304
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
HR++ V ++ GV +++DSKATN+++ L + K V+ + G G +
Sbjct: 305 DGVEHRLESVD-EVNGVLYINDSKATNVDSVWYALESM--DKPVVWIAG------GTDKG 355
Query: 313 GFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIP-CFAVANMKDAVNHARRMATNGD 371
L+E L + V T GV K + IP +M DAV+ A++ + GD
Sbjct: 356 NDYTLLEDLAGQK-VKTLICLGVDNRKLISAFTGKIPEIVETRSMADAVSVAQKQSKPGD 414
Query: 372 AIVLSPGCASFDEFRNFEHRGMVFQELAF 400
++LSP CASFD F+N+EHRG +F+E +
Sbjct: 415 VVLLSPACASFDLFKNYEHRGKLFKEEVY 443
>gi|298156874|gb|EFH97964.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
Length = 448
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 115/370 (31%), Positives = 180/370 (48%), Gaps = 55/370 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + + +
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKYLAFQFENL-----MPV 265
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
+KV G HN A A LG +G+ +A+ +++ HR Q + R+ GV +
Sbjct: 266 RELKVRGAHN--QANALAALALGHAVGLPSDAMLASLREFTGLEHRCQWL-REHGGVHYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCV 327
+DSKATN+ A + D+ G K V++ GG K + F L P+ H R
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGAD------FSALRAPVAEHCRAA 375
Query: 328 ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ G LI + L G ++P V ++ AV H+ ++A GDA++LSP CAS D F+N
Sbjct: 376 VLLGRDAELIAQAL---GDAVPLVRVDTVQAAVEHSAKLAQRGDAVLLSPACASLDMFKN 432
Query: 388 FEHRGMVFQE 397
+E RG VF +
Sbjct: 433 YEERGRVFAQ 442
>gi|422668857|ref|ZP_16728710.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. aptata str. DSM 50252]
gi|330981219|gb|EGH79322.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. aptata str. DSM 50252]
Length = 448
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 112/364 (30%), Positives = 180/364 (49%), Gaps = 43/364 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL + ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDEVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYNGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNL--AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E + F L F G++ + K +F+ + + + +KV
Sbjct: 221 ---SRPLIGEGLPCWTFGLNKPDFNGF-GLREENGEKYLAFQFENL-----MSVRELKVR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN A A LG +G+ +A+ +++ HR Q + R+ GV + +DSKAT
Sbjct: 272 GAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL-REHDGVHYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D+ G K V++ GG K + F L P+ + R + G
Sbjct: 329 NVGAALAAIEGLGSDIDG-KLVLIAGGDGKGAD------FSGLRAPVAKYCRAAVLLGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
LI + L G ++P V ++ AV H+ ++A GDA++LSP CAS D F+N+E RG
Sbjct: 382 AELIAQAL---GDAVPLVRVDTVQAAVEHSAKLALRGDAVLLSPACASLDMFKNYEERGR 438
Query: 394 VFQE 397
VF +
Sbjct: 439 VFAQ 442
>gi|319778486|ref|YP_004129399.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Taylorella
equigenitalis MCE9]
gi|317108510|gb|ADU91256.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Taylorella
equigenitalis MCE9]
Length = 478
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 115/400 (28%), Positives = 187/400 (46%), Gaps = 53/400 (13%)
Query: 27 RVMSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
+++SE+D + + + IKI+ +TGTNGK+TV + V M + G+++ GN +S
Sbjct: 102 KIISEIDLFYEAVKSNSKQIKIIGITGTNGKTTVTSMVRLMCEYAGLKSVEAGN----IS 157
Query: 84 EAAFHCIALPSSKPKF-QVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+A + K + V +E+SS Q+ Y C S +LN+T DH++ H +M+ Y
Sbjct: 158 PSALTVVCEFEEKNSWPDVISLELSSAQL-FYTDYICLDASTILNITQDHIDWHGSMEAY 216
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS-FEV 201
+K +FSH + F L+ A L + + P K D K + +
Sbjct: 217 IASKKKIFSHSKIAVVDENQFKEFGLSNA-------LVYRDSLPINKEDIGIKEVNGMKW 269
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+ + + MK+ G HN NA A +D+ E L + + HR
Sbjct: 270 FCTTDKNLMPVEAMKIRGNHNVLNAMAAMQLCRAIDLP--FEPLLTALRDYEAHNHRCTY 327
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------VLNGQES 311
V RDIQGV ++DDSK TN+ AT + D V++LGG+ K + N +S
Sbjct: 328 V-RDIQGVNFIDDSKGTNVGATVAAI-DGMYRNLVVILGGEGKGQDFTPLYESLRNRTKS 385
Query: 312 NGFEKLI------EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR 365
NG + ++ L+H+ + F + +IP V + +AV + +
Sbjct: 386 NGLKGIVLIGKDKNILSHYLNIKDFKFEE------------TIPVVVVNTIDEAVVESFK 433
Query: 366 MATNGDAIVLSPGCASFDEFRNFEHRGMVF----QELAFS 401
+A +GD ++LSP CAS D F+N+ RG+ F ELA S
Sbjct: 434 LAQSGDLVLLSPACASIDMFKNYHERGVKFVEAINELALS 473
>gi|88799425|ref|ZP_01115002.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Reinekea
blandensis MED297]
gi|88777735|gb|EAR08933.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Reinekea sp.
MED297]
Length = 463
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 107/359 (29%), Positives = 177/359 (49%), Gaps = 32/359 (8%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K++A+TG+N KSTV ++G+ L G + V GN+G P+ L + + VAV
Sbjct: 128 KVIAITGSNAKSTVTAWLGEALKAGGQKTLVAGNIGIPV---------LETDHAAYDVAV 178
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+E+ ++ ++ VLN++ DH++R++T+ +Y K ++ +
Sbjct: 179 LELSSFQLELLSR-VNADIACVLNISEDHMDRYETLAHYVQAKQKIYFGAASVLYNRSDA 237
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
Q L + H + P + K E A G L + + + G HN
Sbjct: 238 LTQPL---VPDHVLKRTFASDAPDLNHYGLRKQDGNEWLAQGFDLVLPVSEVALPGGHNV 294
Query: 224 HNA-AVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
NA AV AL+ + G D A + + P+R Q + R+ G+T+++DSKATN+ +
Sbjct: 295 MNALAVLALADMA---GNDRSATLTALTSFSGLPYRCQAI-RERAGITFINDSKATNVGS 350
Query: 283 TCT---GLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWK 339
T GL+ ++G +L GGQAK Q+ + ++IE C + + G +
Sbjct: 351 TTAALEGLVSVRGANIHLLAGGQAK---DQDLSPLAEVIE----QTCKQVYAF-GQDRQQ 402
Query: 340 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
L ++ C + +A A A GD ++LSP CASFD+F NFEHRG F +L
Sbjct: 403 FLALTDRAVEC---ETLSEAFAKANANAQEGDIVLLSPACASFDQFENFEHRGQQFNQL 458
>gi|256003375|ref|ZP_05428366.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
thermocellum DSM 2360]
gi|255992665|gb|EEU02756.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
thermocellum DSM 2360]
Length = 434
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 118/403 (29%), Positives = 188/403 (46%), Gaps = 62/403 (15%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V SE++ ++ P +I AVTG++GK+T T + ML G + ++GGN+G PL
Sbjct: 67 EEGTEVTSEMEVFFELCP--AEIFAVTGSDGKTTTTTLIYNMLKEQGYKCWLGGNIGIPL 124
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ K +V V+E+SS+Q+ K P V+VV N++P+HL+ HK+M+ Y
Sbjct: 125 ------LSKIEEIKDTDKV-VLELSSFQLHTMTK--SPNVAVVTNVSPNHLDVHKSMEEY 175
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNE---AIKGH-----RFNLAWIGA--------FP 186
K ++F + +L F N E KG R + GA F
Sbjct: 176 VSAKKNIFRYQSAEDRLVLNFDNDITREFAGEAKGDVVYFSRKTVLEKGAMLKDDMLVFR 235
Query: 187 GVKIDTE-AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
+ +TE AK + +P V HN N A +V+ VD + +
Sbjct: 236 DGETETEIAKASDIVIPGV----------------HNVENFLAATAAVIDC---VDRDVI 276
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKV 305
HR+++V R+I GV + +DS A++ T GL K K +++ GG K
Sbjct: 277 RKVATTFTGVEHRIELV-REINGVKFYNDSIASSPTRTIAGLNSFK-DKVILIAGGYDKK 334
Query: 306 LNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVN------NGLSIPCFAVANMKD 358
+ ++ L + +C++ G + I K L + G IP ++++
Sbjct: 335 I------PYDALGPVIAEKVKCLVLIGQTAPKIEKALRDETERSGKGSDIPIKKCTSLEE 388
Query: 359 AVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 401
AV A R A+ GD ++LSP ASFD F+NFE RG F+E+ S
Sbjct: 389 AVKVAYRFASVGDVVILSPASASFDMFKNFEERGNRFKEIVNS 431
>gi|449094214|ref|YP_007426705.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
subtilis XF-1]
gi|449028129|gb|AGE63368.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
subtilis XF-1]
Length = 451
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 179/374 (47%), Gaps = 26/374 (6%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V +E++ A + S K + +TG+NGK+T T + +ML +A + GN+G
Sbjct: 95 KRGIPVWTEIELAYYLT--SAKFIGITGSNGKTTTTTLIYEMLKADSQKALIAGNIGTVA 152
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
SE A+H + V E+SS+Q+ + F P +S++LN+ HL+ H T +NY
Sbjct: 153 SEVAYHADG-------DEWIVTELSSFQL-MGTHAFRPEISLILNVFDAHLDYHHTRENY 204
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K ++ H + ++ NQ ++ A I F K + +
Sbjct: 205 EKAKQKVYLHQTASDKAIV---NQDDETVVRLAEAGKAEIVPFSVSKTLEQGAYVKDSMI 261
Query: 203 AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
+ L L + + G HN N +AA++V+ G EA+ + HR+Q V
Sbjct: 262 MFNGEAILPLEEVVLPGAHNLENI-LAAIAVVKT-AGASNEAVKKVLTSFTGVKHRLQYV 319
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322
+ G + +DSKATN+ AT L K VILL G NGF+ L +
Sbjct: 320 -TTVNGRKFYNDSKATNILATSKALSAFD--KPVILLAGGL-----DRGNGFDDLKPYMK 371
Query: 323 HHRCVITFGYSGVLIWKTLVNNGLSIP-CFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
H + V+TFG + + K + N L I V N++ AV+ A ++ GD I+LSP CAS
Sbjct: 372 HVKAVLTFGQTAPKLEK--LGNELGIQHVKRVDNVEQAVSAAFAISNEGDVILLSPACAS 429
Query: 382 FDEFRNFEHRGMVF 395
+D+F+ FE RG +F
Sbjct: 430 WDQFKTFEERGDMF 443
>gi|336313066|ref|ZP_08568009.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
HN-41]
gi|335863186|gb|EGM68344.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
HN-41]
Length = 439
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 43/383 (11%)
Query: 20 CLLQSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL 78
+L G V+ +++ FA ++ R ++ +TG+NGKSTV T VG+ML G+ VGGN+
Sbjct: 85 AVLDMGIEVIGDVELFAREIADRKPCVIGITGSNGKSTVTTLVGEMLREAGMAVAVGGNI 144
Query: 79 GNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT 138
G P AL ++ V+E+SS+Q+E + C VS LN+T DH++R+
Sbjct: 145 GIP---------ALDLLSKNAEIFVLELSSFQLETTHSLNC-VVSTCLNVTEDHMDRYSD 194
Query: 139 MKNYALTKCHLFSH---MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAK 195
M Y K L+ ++ + L + +N+ + F LA D++
Sbjct: 195 MDAYRNAKLRLYHQSRAVLFNRDDALTMPTEPMNQ----NSFGLAPPEGDEWGISDSKIY 250
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
S E+ + + + ++G HN+ N +AA++++ +GVD + +
Sbjct: 251 HGSSEI--------MPITEVSLIGSHNHAN-LLAAMALVDA-VGVDRQVMAKVARTFTGL 300
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKVLNGQESNG 313
HR ++V GVT+V+DSKATN+ AT L L H +++ GG K +
Sbjct: 301 SHRCEVVGVK-GGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDGKGAD------ 353
Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
F L+EPL +IT G G I L V +M AV A +AT+GD +
Sbjct: 354 FGPLVEPLTKVTHLITLGRDGNKIA------ALKEGAIKVDSMAAAVAKAAELATSGDIV 407
Query: 374 VLSPGCASFDEFRNFEHRGMVFQ 396
+LSP CAS D + NF RG F+
Sbjct: 408 LLSPACASLDMYSNFMARGDDFR 430
>gi|258511259|ref|YP_003184693.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257477985|gb|ACV58304.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 458
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 114/393 (29%), Positives = 192/393 (48%), Gaps = 46/393 (11%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+A L+++ ++++++ A+ R I A+TG+NGK+T T VG+ML G V GN
Sbjct: 94 IAELIKAAHVIVTDVEIASWFERR--PIYAITGSNGKTTTTTLVGEMLKASGYHPIVAGN 151
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P+ + + P + V+EVSS+Q++ F P +LN P HL+ H
Sbjct: 152 IGTPVCD----VVDQPG-----DLLVLEVSSFQLD-GTHTFHPRGGALLNFYPAHLDYHG 201
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNE------------AIKGHRFNLAWIGAF 185
T + Y K LF++ + +L + + + +++G F+ +G
Sbjct: 202 TYEAYQQAKWKLFANQTPDDVAILNWDQALVRDRAGELAARVRGFSLEGAPFDEG-VGVI 260
Query: 186 PGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
G + + + +P V Q+ L GRHN NAA AA L VEA+
Sbjct: 261 DGALVAVRGRERTPILP----VDQVALP-----GRHNLQNAAAAAALALAAG--ASVEAV 309
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKV 305
+ + HR++ V R++ GV + +DSKATN +A L + V + GG +
Sbjct: 310 ARVLATFQGVEHRLEFV-REVSGVRYYNDSKATNPDAARQALRSFE-RGVVWIAGGLDRG 367
Query: 306 LNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR 364
++ F+ L+ ++ R + G + + + L G+S FA A+M++AV A
Sbjct: 368 IS------FDPLLPDISGRVRAAVLLGETKEKLREVLARAGVSTCAFA-ASMEEAVREAS 420
Query: 365 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
RMA GD ++LSP CAS+D F ++E RG +F+E
Sbjct: 421 RMAEPGDVVLLSPACASWDMFPSYEVRGSMFKE 453
>gi|125973556|ref|YP_001037466.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
thermocellum ATCC 27405]
gi|158513249|sp|A3DE94.1|MURD_CLOTH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|125713781|gb|ABN52273.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
thermocellum ATCC 27405]
Length = 466
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 118/403 (29%), Positives = 188/403 (46%), Gaps = 62/403 (15%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V SE++ ++ P +I AVTG++GK+T T + ML G + ++GGN+G PL
Sbjct: 99 EEGTEVTSEMEVFFELCP--AEIFAVTGSDGKTTTTTLIYNMLKEQGYKCWLGGNIGIPL 156
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ K +V V+E+SS+Q+ K P V+VV N++P+HL+ HK+M+ Y
Sbjct: 157 ------LSKIEEIKDTDKV-VLELSSFQLHTMTK--SPNVAVVTNVSPNHLDVHKSMEEY 207
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNE---AIKGH-----RFNLAWIGA--------FP 186
K ++F + +L F N E KG R + GA F
Sbjct: 208 VSAKKNIFRYQSAEDRLVLNFDNDITREFAGEAKGDVVYFSRKTVLEKGAMLKDDMLVFR 267
Query: 187 GVKIDTE-AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
+ +TE AK + +P V HN N A +V+ VD + +
Sbjct: 268 DGETETEIAKASDIVIPGV----------------HNVENFLAATAAVIDC---VDRDVI 308
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKV 305
HR+++V R+I GV + +DS A++ T GL K K +++ GG K
Sbjct: 309 RKVATTFTGVEHRIELV-REINGVKFYNDSIASSPTRTIAGLNSFK-DKVILIAGGYDKK 366
Query: 306 LNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNN------GLSIPCFAVANMKD 358
+ ++ L + +C++ G + I K L + G IP ++++
Sbjct: 367 I------PYDALGPVIAEKVKCLVLIGQTAPKIEKVLRDETERSGKGSDIPIKKCTSLEE 420
Query: 359 AVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 401
AV A R A+ GD ++LSP ASFD F+NFE RG F+E+ S
Sbjct: 421 AVKVAYRFASVGDVVILSPASASFDMFKNFEERGNRFKEIVNS 463
>gi|295698678|ref|YP_003603333.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Riesia
pediculicola USDA]
gi|291157135|gb|ADD79580.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Riesia
pediculicola USDA]
Length = 439
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 101/385 (26%), Positives = 197/385 (51%), Gaps = 45/385 (11%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G ++ +++ + + R KI+++TG+NGKST + + ++ ++ +GGN+G P+
Sbjct: 87 RKGIEIIGDIELFCREVDRDKKIISITGSNGKSTTASVLTEIAKKANLKVGLGGNIGVPV 146
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKN 141
E + + + ++E+SS+Q+EI + +V+LN++ +H++R+ M
Sbjct: 147 LELLNY---------DYDIYILELSSFQLEITST-LKSIGAVILNISENHMDRYPFGMYQ 196
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT-ASFE 200
Y K ++ N + ++ N+ + I F L++ +++T+ T FE
Sbjct: 197 YLSAKLKIYDFAKNCVINIMD--NRIWPKEIDKRNF-LSFGINSGDYRLNTKKNTIQRFE 253
Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
+ + +K++G+HN+ N A + ++G+ I + + ++ + PHR
Sbjct: 254 KDLI------HIKFIKIIGQHNHMNFLATLCLSEIIGIPINISLFVISRYSGL----PHR 303
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILLGG---QAKVLNGQESNGF 314
+Q+VH+ GV W++DSK+TN+E+T L +K + K +LLGG ++K+ +E +
Sbjct: 304 LQVVHKK-NGVIWINDSKSTNIESTIAALKSIKANNKIHLLLGGDKRKSKISRLKEFVSY 362
Query: 315 EKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 374
+K I + + FG L N+ + + +K + N +GD I+
Sbjct: 363 KKKIRIYCFGKDKLKFG--------KLRNDSIVLNTLEQCMLKVSKN-----TESGDIIL 409
Query: 375 LSPGCASFDEFRNFEHRGMVFQELA 399
LSP C+S D+F NFEHRG VF E+A
Sbjct: 410 LSPACSSLDQFSNFEHRGSVFSEIA 434
>gi|39993|emb|CAA45555.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus subtilis
subsp. subtilis str. 168]
gi|383709|prf||1904153A murD gene
Length = 369
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 179/374 (47%), Gaps = 26/374 (6%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V +E++ A + S K + +TG+NGK+T T + +ML +A + GN+G
Sbjct: 13 KRGIPVWTEIELAYYLT--SAKFIGITGSNGKTTTTTLIYEMLKADSQKALIAGNIGTVA 70
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
SE A+H + V E+SS+Q+ + F P +S++LN+ HL+ H T +NY
Sbjct: 71 SEVAYHA-------DGDEWIVTELSSFQL-MGTHAFRPEISLILNVFDAHLDYHHTRENY 122
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K ++ H + ++ NQ ++ A I F K + +
Sbjct: 123 EKAKQKVYLHQTASDKAIV---NQDDETVVRLAEAGKAEIVPFSVSKTLEQGAYVKDSMI 179
Query: 203 AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
+ L L + + G HN N +AA++V+ G EA+ + HR+Q V
Sbjct: 180 MFNGEAILPLEEVVLPGAHNLENI-LAAIAVVKT-AGASNEAVKKVLTSFTGVKHRLQYV 237
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322
+ G + +DSKATN+ AT L K VILL G NGF+ L +
Sbjct: 238 -TTVNGRKFYNDSKATNILATSKRLSAFD--KPVILLAGGL-----DRGNGFDDLKPYMK 289
Query: 323 HHRCVITFGYSGVLIWKTLVNNGLSIP-CFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
H + V+TFG + + K + N L I V N++ AV+ A ++ GD I+LSP CAS
Sbjct: 290 HVKAVLTFGQTAPKLEK--LGNELGIQHVKRVDNVEQAVSAAFALSNEGDVILLSPACAS 347
Query: 382 FDEFRNFEHRGMVF 395
+D+F+ FE RG +F
Sbjct: 348 WDQFKTFEERGDMF 361
>gi|255536592|ref|YP_003096963.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacteriaceae
bacterium 3519-10]
gi|255342788|gb|ACU08901.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacteriaceae
bacterium 3519-10]
Length = 457
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 114/410 (27%), Positives = 197/410 (48%), Gaps = 84/410 (20%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q R+ SE++FA++ + KI+A+TG+NGK+T + + +L + G++ +GGN+G
Sbjct: 93 QKDIRLSSEIEFASEFT--NAKIIAITGSNGKTTTTSLIYHILKNDGLKVGLGGNIGKSF 150
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQM-EIPNKYFCPTVSVVLNLTPDHLERHK-TMK 140
++ + F V+EVSS+Q+ +I N F P +S++LNL+ DHL+++ +
Sbjct: 151 AKQV--------ADESFDYYVLEVSSFQLDDIQN--FRPHISLLLNLSQDHLDQYNYNYE 200
Query: 141 NYALTKCHLFSHMVN---------------------TKLGLLPFGNQHLNEAIKGHRFNL 179
YAL K + + N K ++PF L E +K F
Sbjct: 201 EYALAKFRIAENQENDNFFIYNKDDEMSQNLLEKLEVKAKMIPFS---LKEKLKEGGF-- 255
Query: 180 AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG 239
F G K+ V + + + + ++G HN N+ A S+ G +
Sbjct: 256 -----FTGDKM----------VVKLQDEFSMDIAELALVGNHNVANSLAA--SIAGKILK 298
Query: 240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL 299
+ E++ +++ + HR++ V + GV +++DSKATN+ AT L +K V ++
Sbjct: 299 ISNESIRNSLMTFQAVQHRLEQVA-ETGGVRFINDSKATNVNATYYALESMK-QPTVWIV 356
Query: 300 GGQAKVLNGQESNGFEKLIEP---------LNHHRCVITFGYSGVLIWKTLVNNGLSIPC 350
GG K G + E L++ L++ + V F LI+ T
Sbjct: 357 GGIDK---GNDYTEIEDLVKRKVKAIVCLGLDNQKIVDFFKSKKDLIYST---------- 403
Query: 351 FAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAF 400
++M +AVN ++ +A GDA++LSP CASFD F N+E RG F++ F
Sbjct: 404 ---SSMAEAVNISKSLAAKGDAVLLSPCCASFDLFENYEDRGNQFKKEVF 450
>gi|46446885|ref|YP_008250.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase murD [Candidatus
Protochlamydia amoebophila UWE25]
gi|62900536|sp|Q6MBS4.1|MURD_PARUW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|46400526|emb|CAF23975.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase murD
[Candidatus Protochlamydia amoebophila UWE25]
Length = 444
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 114/374 (30%), Positives = 182/374 (48%), Gaps = 30/374 (8%)
Query: 26 KRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85
K V+ E++ + SI + VTGTNGK+TV + +LN G++A GN+G PL+
Sbjct: 96 KEVIGEIELGCRASCHSI--IGVTGTNGKTTVTLLITHILNANGLKAKALGNVGTPLTRE 153
Query: 86 AFHCIALPSSKPKFQ-VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
FQ +AV+E+SSYQ++ + +VVLN+TPDHLER++TM+NYA
Sbjct: 154 ILTL--------DFQEIAVLELSSYQLDTFQQQVLDE-AVVLNITPDHLERYETMENYAK 204
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+K + + K G L + E F + G P T+ + E
Sbjct: 205 SKFQIGKCL--KKSGKLFVERKAAVEYQHLLNFPHSTYGYLPSCHTYTDLCSVFLEG--- 259
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+ Q +L ++ G+ N+ + A + G+ + ++ + P HR++ V
Sbjct: 260 --MQQFEL-PLEWQGKENHDLENLLAAYAICARRGIKPQQFLQALKTFQKPSHRVEFV-L 315
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH 324
+ G+ + DDSK TN++A + + ++ V L+ G V G + + + H
Sbjct: 316 EKNGIHFYDDSKGTNIDAVMRAVQSI--NRPVFLIAG--GVDKGASYVAWLNVFK--GHV 369
Query: 325 RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 384
+ V G + I K L L I AN+ DAV A + A GDA++LSPGCASFD
Sbjct: 370 KKVYAIGQAANKIQKEL---SLHIRVQIEANLDDAVKQAYQDAKEGDAVLLSPGCASFDM 426
Query: 385 FRNFEHRGMVFQEL 398
F+++ HRG F+ L
Sbjct: 427 FKDYIHRGEEFKRL 440
>gi|421226866|ref|ZP_15683580.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2072047]
gi|395597936|gb|EJG58142.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2072047]
Length = 450
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 109/374 (29%), Positives = 183/374 (48%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVAQTA----SDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + AF ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVAFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L VD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-DVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + +T G + ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRTADKAG--VAYVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|342163377|ref|YP_004768016.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pseudopneumoniae IS7493]
gi|341933259|gb|AEL10156.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pseudopneumoniae IS7493]
Length = 450
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 185/378 (48%), Gaps = 33/378 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVA-------QTATDEDTLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTA 197
Y K ++ + M +L F NQ L + + R A + F + K+D E
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKELA--RKTQATVVPFSTLEKVDGAYLEDGQL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F V S++ V G HN N A+A ++V L GVD + + T+ H
Sbjct: 260 YFRGEVVMAASEI-----GVPGNHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R+Q V+ +I+GV + +DSK+TN+ AT L K +++ GG + N F++L
Sbjct: 313 RLQFVN-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDEL 365
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
+ + + ++ G S + + G++ ++ DA A +AT GD ++LSP
Sbjct: 366 VPDITGLKKMVILGQSAERVKRAADKAGVT--YVDATDIADATRKAYELATQGDVVLLSP 423
Query: 378 GCASFDEFRNFEHRGMVF 395
AS+D + NFE RG +F
Sbjct: 424 ANASWDMYANFEVRGDLF 441
>gi|298531031|ref|ZP_07018432.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509054|gb|EFI32959.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 433
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 174/376 (46%), Gaps = 46/376 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L +G+ V+SEL+ A+ I S ++AVTGTNGK+T + ++L G F GGN+G
Sbjct: 92 LCPAGQTVISELELASWFI--SEPVIAVTGTNGKTTTCMLIQKVLEKAGRRVFTGGNIGT 149
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
PLS+ H + S + + V+EVSS+Q++ + F P V V+LN + +HL+ H++
Sbjct: 150 PLSD---HVL----SGKRADILVLEVSSFQLQGCSG-FTPHVGVLLNFSANHLDHHESED 201
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFE 200
Y K LF+ L +LP + E+ + N+ + A T F
Sbjct: 202 EYFRAKMQLFARQGPMDLAVLPLDLRARVESDFRIKSNITYF-----------APTGRFH 250
Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
P + G HN N A L+ +D+ ++ + + PPHR +
Sbjct: 251 CPG-------------LPGAHNQANMEAAMLACGFVDVSRNI--FDQALLEFVPPPHRQE 295
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP 320
+ +D +GV +++DSKAT LEA L +L GG+ K F L
Sbjct: 296 VFLQD-KGVRYINDSKATTLEAMTAALKAFDS-PIRLLAGGRYK------GGDFSLLAGT 347
Query: 321 LNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 380
L + I++ N + F A+++ A A + A GD ++LSPG +
Sbjct: 348 LQEKAAKVYLFGDSREIFEDAWKNSADMEHF--ADLEQAAARAVQEAGPGDNVLLSPGTS 405
Query: 381 SFDEFRNFEHRGMVFQ 396
SFD F N++ RG F+
Sbjct: 406 SFDLFNNYQERGEAFK 421
>gi|385778522|ref|YP_005687687.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
thermocellum DSM 1313]
gi|419723649|ref|ZP_14250764.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
thermocellum AD2]
gi|419724526|ref|ZP_14251588.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
thermocellum YS]
gi|316940202|gb|ADU74236.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
thermocellum DSM 1313]
gi|380772073|gb|EIC05931.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
thermocellum YS]
gi|380780331|gb|EIC10014.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
thermocellum AD2]
Length = 466
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 119/403 (29%), Positives = 192/403 (47%), Gaps = 62/403 (15%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V SE++ ++ P +I AVTG++GK+T T + ML G + ++GGN+G PL
Sbjct: 99 EEGTEVTSEMEVFFELCP--AEIFAVTGSDGKTTTTTLIYNMLKEQGYKCWLGGNIGIPL 156
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ K +V V+E+SS+Q+ K P V+VV N++P+HL+ HK+M+ Y
Sbjct: 157 ------LSKIEEIKDTDKV-VLELSSFQLHTMTK--SPNVAVVTNVSPNHLDVHKSMEEY 207
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNE---AIKGH-----RFNLAWIGA--------FP 186
K ++F + +L F N E KG R + GA F
Sbjct: 208 VSAKKNIFRYQSAEDRLVLNFDNDITREFAGEAKGDVVYFSRKTVLEKGAMLKDDMLVFR 267
Query: 187 GVKIDTE-AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
+ +TE AK + +P V HN+ N+ A A + + D+ V
Sbjct: 268 DGETETEIAKASDIVIPGV--------HNV-----ENFLAATAAVIDCVDRDVIRKVATT 314
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKV 305
+ +E HR+++V R+I GV + +DS A++ T GL K K +++ GG K
Sbjct: 315 FTGVE------HRIELV-REINGVKFYNDSIASSPTRTIAGLNSFK-DKVILIAGGYDKK 366
Query: 306 LNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNN------GLSIPCFAVANMKD 358
+ ++ L + +C++ G + I K L + G IP ++++
Sbjct: 367 I------PYDALGPVIAEKVKCLVLIGQTAPKIEKALRDETERSGKGSDIPIKKCTSLEE 420
Query: 359 AVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 401
AV A R A+ GD ++LSP ASFD F+NFE RG F+E+ S
Sbjct: 421 AVKVAYRFASVGDVVILSPASASFDMFKNFEERGNRFKEIVNS 463
>gi|150026097|ref|YP_001296923.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Flavobacterium
psychrophilum JIP02/86]
gi|149772638|emb|CAL44121.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Flavobacterium
psychrophilum JIP02/86]
Length = 443
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 108/379 (28%), Positives = 182/379 (48%), Gaps = 37/379 (9%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++F A + K + +TG+NGK+T V +L G+ + GN+G
Sbjct: 88 VISEIEFTAPFT--NAKTIGITGSNGKTTTTMLVYHLLKQGGLNVGLAGNIG-------- 137
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTK 146
A S+ V+E+SS+Q++ KY P ++++ N++PDHL+R+ + Y +K
Sbjct: 138 KSFAWQVSEDTHDFYVLELSSFQLDGIQKY-KPHIAIITNISPDHLDRYDYQYEKYIESK 196
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHR-------FNLAWIGAFPGVKIDTEAKTASF 199
+ + + +Q +N +K ++ F+L F + + +
Sbjct: 197 FRITMNQTEEDYLIYDADDQAINNWLKNNKTKAQLVPFSLTKQFEFGAYEANNNININTN 256
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
P V S+L L G+HN NA +AA SV L + + + ++ + HR+
Sbjct: 257 NDPFVMQTSELSLE-----GKHNVKNA-LAATSVAQL-LKIRKATIRESLADFQGVEHRL 309
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319
+ V + IQ V +++DSKATN+ AT L D + ++GG K N + +L+E
Sbjct: 310 EKVLK-IQNVQYINDSKATNVNATFYAL-DSMTSPTIWIVGGVDK------GNDYSELME 361
Query: 320 PLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
+N + + +I G I N + V+ M DAV A +MA GD ++LSP
Sbjct: 362 LVNKNVKTIICLGVDNKKIIDAFSN--VVDELIEVSTMTDAVRQAYKMAEKGDTVLLSPA 419
Query: 379 CASFDEFRNFEHRGMVFQE 397
CASFD F N+E RG F++
Sbjct: 420 CASFDLFENYEDRGRQFKQ 438
>gi|333381686|ref|ZP_08473365.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dysgonomonas gadei
ATCC BAA-286]
gi|332829615|gb|EGK02261.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dysgonomonas gadei
ATCC BAA-286]
Length = 444
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 104/389 (26%), Positives = 196/389 (50%), Gaps = 45/389 (11%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
++ G ++SE++FA + + K++ +TG+NGK+T + + +L G+ +GGN+G
Sbjct: 83 IEKGIPILSEMEFAKRYT--TAKMICITGSNGKTTTTSLIYHILKSAGLNVGLGGNIG-- 138
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-TM 139
A ++ + V+E+SS+Q+E N Y F ++++LN+TPDHL+R+ +
Sbjct: 139 ------RSFARQVAEENYDYYVLELSSFQLE--NMYSFKADIAILLNITPDHLDRYDHDI 190
Query: 140 KNYALTKCHLFSHMVNTKLGLL----PFGNQHLNEAI-KGHRFNLAW------IGAFPGV 188
+ Y K + + + P ++ + + + KG ++ A I
Sbjct: 191 QKYIDAKMRIVQNQTEADAFIFWEEDPIVSKEIKKLVSKGKQYTFAEHKVGNAIAYLNDH 250
Query: 189 KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
+ID ++F ++ Q L + G HN +N+ + ++ LDI D L +
Sbjct: 251 EIDINTPNSAF------IMEQDLL---ALEGTHNLYNSLASGIAAKLLDITDD--NLRHS 299
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG 308
+ + HR++ V + ++G+ +++DSKATN+ + L +K K V++LGG K G
Sbjct: 300 LSDFQGVEHRLEKVAK-VKGIQFINDSKATNVNSCWYALQSMKT-KVVLILGGTDK---G 354
Query: 309 QESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMAT 368
+ E+L++ + R ++ G + K +G ++MK+AV + +A
Sbjct: 355 NDYTEIEQLVK--DKARALVFLGVDNSKLHKFF--DGKVKNIADASSMKEAVEKSYALAE 410
Query: 369 NGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
GD ++LSP CASFD F+N+E RG F+E
Sbjct: 411 EGDTVLLSPCCASFDLFKNYEDRGDQFKE 439
>gi|422002286|ref|ZP_16349524.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
santarosai serovar Shermani str. LT 821]
gi|417259218|gb|EKT88597.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
santarosai serovar Shermani str. LT 821]
Length = 462
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 117/389 (30%), Positives = 183/389 (47%), Gaps = 48/389 (12%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V SE+D KI+ VTGT+GKST + +L + GGNLG P +
Sbjct: 89 VFSEIDLGRFFFKG--KIIGVTGTDGKSTTTSLTAHLLRKDFSDLREGGNLGTPFTSFCK 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
I+L AV+E+SSYQ++ N VSV LNL PDHLERH TM+NY K
Sbjct: 147 KPISL---------AVLELSSYQLDDSNPLHL-DVSVFLNLAPDHLERHTTMENYFQAKL 196
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
+ +++ N L+ ++E IK NLA T A A + + +
Sbjct: 197 KI-ANLQNENHFLI------VSEKIKERILNLASFRCKLLSFGRTSASDAFLDENSSKIG 249
Query: 208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLD-IGVDVEALNSTIEILRTPPHRMQIVHRDI 266
+ ++++ HN A S+L + IG E++ + I + + PHR QI +
Sbjct: 250 TSKFVYDISGFHLPGTHNGENLAASILAAEAIGGKPESIQAQIPLFKGLPHRFQIAG-EK 308
Query: 267 QGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAKVLNGQESNGFEKLIEPLNHH- 324
QG+++++DSK+TNL + G+ K + ++LGG+ K QE L + LN
Sbjct: 309 QGISFINDSKSTNLHSMLAGMSTWKNLDRTCLILGGRPK----QEDP--RPLYDFLNRKI 362
Query: 325 RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAV----------------NHARRMAT 368
CV+ G + W+ + N + F+V ++ +A N R+
Sbjct: 363 GCVVLIGEARSF-WEEGIRNAIGEKLFSVESLNEAFEIFKKGNIVSETSRPSNRKIRLTN 421
Query: 369 NGD--AIVLSPGCASFDEFRNFEHRGMVF 395
+ + ++V SP CASFD+++NFE RG F
Sbjct: 422 SAEITSVVFSPACASFDQYKNFEERGNHF 450
>gi|397662261|ref|YP_006502961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Taylorella
equigenitalis ATCC 35865]
gi|394350440|gb|AFN36354.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Taylorella
equigenitalis ATCC 35865]
Length = 478
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 115/400 (28%), Positives = 187/400 (46%), Gaps = 53/400 (13%)
Query: 27 RVMSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
+++SE+D + + + IKI+ +TGTNGK+TV + V M + G+++ GN +S
Sbjct: 102 KIISEIDLFYEAVKSNSKQIKIIGITGTNGKTTVTSMVRLMCEYAGLKSVEAGN----IS 157
Query: 84 EAAFHCIALPSSKPKF-QVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+A + K + V +E+SS Q+ Y C S +LN+T DH++ H +M+ Y
Sbjct: 158 PSALTVVCEFEEKNSWPDVISLELSSAQL-FYTDYICLDASTILNITQDHIDWHGSMEAY 216
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS-FEV 201
+K +FSH + F L+ A L + + P K D K + +
Sbjct: 217 IASKKKIFSHSKIAVVDENQFKEFGLSNA-------LVYRDSLPINKEDIGIKEVNGMKW 269
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+ + + MK+ G HN NA A +D+ E L + + HR
Sbjct: 270 FCTTDKNLMPVEAMKIRGNHNVLNAMAAMQLCRAIDLP--FEPLLTALRDYEAHNHRCTY 327
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------VLNGQES 311
V RDIQGV ++DDSK TN+ AT + D V++LGG+ K + N +S
Sbjct: 328 V-RDIQGVNFIDDSKGTNVGATVAAI-DGMYRNLVVILGGEGKGQDFTPLYESLRNRTKS 385
Query: 312 NGFEKLI------EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR 365
NG + ++ L+H+ + F + +IP V + +AV + +
Sbjct: 386 NGLKGIVLIGKDKNILSHYLHIKDFKFEE------------TIPVVVVNTIDEAVVESFK 433
Query: 366 MATNGDAIVLSPGCASFDEFRNFEHRGMVF----QELAFS 401
+A +GD ++LSP CAS D F+N+ RG+ F ELA S
Sbjct: 434 LAQSGDLVLLSPACASIDMFKNYHERGVKFVEAINELALS 473
>gi|168492843|ref|ZP_02716986.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae CDC3059-06]
gi|418073537|ref|ZP_12710797.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA11184]
gi|418078185|ref|ZP_12715408.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 4027-06]
gi|418081069|ref|ZP_12718279.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 6735-05]
gi|418098060|ref|ZP_12735160.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 6901-05]
gi|418104737|ref|ZP_12741797.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44500]
gi|418114179|ref|ZP_12751170.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 5787-06]
gi|418173050|ref|ZP_12809664.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41277]
gi|418216139|ref|ZP_12842863.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae Netherlands15B-37]
gi|419431090|ref|ZP_13971236.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae EU-NP05]
gi|419433351|ref|ZP_13973470.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA40183]
gi|419464151|ref|ZP_14004044.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA04175]
gi|419497634|ref|ZP_14037342.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47522]
gi|419534128|ref|ZP_14073635.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17457]
gi|421280675|ref|ZP_15731474.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA04672]
gi|421309119|ref|ZP_15759748.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA62681]
gi|183576912|gb|EDT97440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae CDC3059-06]
gi|353747376|gb|EHD28032.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 4027-06]
gi|353751114|gb|EHD31747.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA11184]
gi|353751808|gb|EHD32439.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 6735-05]
gi|353770425|gb|EHD50938.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 6901-05]
gi|353779171|gb|EHD59637.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44500]
gi|353787477|gb|EHD67879.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 5787-06]
gi|353839749|gb|EHE19823.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41277]
gi|353873190|gb|EHE53051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae Netherlands15B-37]
gi|379539370|gb|EHZ04549.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA04175]
gi|379568162|gb|EHZ33144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17457]
gi|379577481|gb|EHZ42400.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA40183]
gi|379599898|gb|EHZ64680.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47522]
gi|379632334|gb|EHZ96910.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae EU-NP05]
gi|395884032|gb|EJG95074.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA04672]
gi|395911863|gb|EJH22727.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA62681]
Length = 450
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 184/374 (49%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|170720128|ref|YP_001747816.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
putida W619]
gi|169758131|gb|ACA71447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas putida
W619]
Length = 448
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 118/370 (31%), Positives = 170/370 (45%), Gaps = 51/370 (13%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAKAGKHVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 ---LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKV 217
LP + N AF ++D E K +FE A+ + +K+
Sbjct: 221 SRPLPVEGR----PCWSFGLNQPDFKAFGLREVDGE-KYLAFEFQAL-----MPARELKI 270
Query: 218 MGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQIVHRDIQGVTWVDD 274
G HN NA A +E LR HR Q V R GV W DD
Sbjct: 271 RGAHNQSNALAALALGH-----AAGLPFEPMLEALREFGGLAHRCQWV-RARSGVNWYDD 324
Query: 275 SKATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVIT 329
SKATN+ A + D+ G K V++ GG K + F L EP+ R V+
Sbjct: 325 SKATNVGAALAAIEGLGADIDG-KLVLIAGGDGKGAD------FAALREPVARFCRAVVL 377
Query: 330 FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 389
G + + L G ++P V + +AV +A GDA++LSP CAS D F+NFE
Sbjct: 378 LGRDADRLAEAL---GDAVPLVRVKTLDEAVQQCAELAVPGDAVLLSPACASLDMFKNFE 434
Query: 390 HRGMVFQELA 399
RG +F + A
Sbjct: 435 ERGRLFAQAA 444
>gi|429756498|ref|ZP_19289090.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. oral taxon 324 str. F0483]
gi|429171239|gb|EKY12873.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. oral taxon 324 str. F0483]
Length = 444
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 106/392 (27%), Positives = 194/392 (49%), Gaps = 37/392 (9%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + + + G V+SE++FA+Q I + +TG+NGK+T + G++
Sbjct: 75 KAPIIKKVHEKGIAVISEIEFASQYTDSLI--VGITGSNGKTTTTLLTHHIFKEAGLQVG 132
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHL 133
+GGN+G +E + + P + V +E+SS+Q++ ++F P ++V+LN+TPDHL
Sbjct: 133 LGGNIGYSFAEL------VATENPPYYV--LEISSFQLD-GIEHFAPHIAVLLNITPDHL 183
Query: 134 ERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT 192
+R+ +NY +K + + + ++ + + + H I I+
Sbjct: 184 DRYDYKFENYINSKFRIAMNQTENDYLIYDADDEVITQWLSTHTIKSKLIP----FSIEK 239
Query: 193 EAKTASF------EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
E +F + +++ + + + G+HN N A SV + + +L
Sbjct: 240 ELPQGAFLKDNKIYIMLENQTTEIDVEEISLRGKHNIKNTMAA--SVAARLVNIRNNSLR 297
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVL 306
+++ + PHR++ V + ++GVT+V+DSKATN+ + L +K V ++GGQ K
Sbjct: 298 ESLKGFKGAPHRLEEV-KVVEGVTYVNDSKATNVNSVFYALDTIK-TPIVWIVGGQDK-- 353
Query: 307 NGQESNGFEKLIEPLNHH--RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR 364
N + L+ P H R ++ G I ++ N ++ +M +AV A+
Sbjct: 354 ----GNDYNSLL-PYVHEKVRAIVCLGVDNTPIIQSFYNTIGTL--VETRSMDEAVKLAQ 406
Query: 365 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
A GD I+LSP CASFD F+N+E RG +F+
Sbjct: 407 GFAQEGDTILLSPACASFDLFKNYEERGDLFK 438
>gi|352095857|ref|ZP_08956804.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
WH 8016]
gi|351677213|gb|EHA60362.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
WH 8016]
Length = 466
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 114/389 (29%), Positives = 188/389 (48%), Gaps = 29/389 (7%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L G V E+ A Q + R + VTGTNGK+TV + +LN G+ A + GN
Sbjct: 86 LMQLRDHGVTVRGEMAVAWQAL-RHCPWIGVTGTNGKTTVTHLLHHVLNQAGLHAPMAGN 144
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G+ +E C+ +KP + V+E+SSYQ+E N+ PT+ + LTPDHLERH
Sbjct: 145 VGHSAAELGLQCMDPSQTKPDW--IVMEMSSYQIESANEVR-PTIGIWTTLTPDHLERHG 201
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
+M Y K L +K +L + L ++ + H + W+ + + + E
Sbjct: 202 SMDAYRDIKQGLLQ---RSKHAVLNADDTDL-KSRQAHWPDAQWVSS---AQTNHEPFNL 254
Query: 198 SFEVPAVGVVSQLQ-----LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
V G V + + + + G HN N + ++ L G++ +A+ +
Sbjct: 255 ELWVNPEGFVCNKKGALFPANALAMPGEHNRQNMLL--VTAAALQAGLEPQAIERGLRSF 312
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
PHR++ + + G+ +DSKATN +A L + G ++L GG +K G S
Sbjct: 313 PGVPHRLENL-GSLHGMNVFNDSKATNYDAAAVALQAVPG-PIILLAGGLSK--QGDASG 368
Query: 313 GFEKLIEPLNHHRCVIT-FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD 371
+ L + + C I FG ++ + + G + + + M DAV A NG+
Sbjct: 369 WLQLLQDKV----CSIALFGSDRDVLSGLIRDFGYTGNVTSHSTMTDAVTAAVENGKNGN 424
Query: 372 A--IVLSPGCASFDEFRNFEHRGMVFQEL 398
A ++LSP CASFD++++FE RG F+E+
Sbjct: 425 AASLLLSPACASFDQYKDFEARGNHFREM 453
>gi|418967472|ref|ZP_13519135.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
mitis SK616]
gi|383344085|gb|EID22255.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
mitis SK616]
Length = 450
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 110/378 (29%), Positives = 184/378 (48%), Gaps = 33/378 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A S K V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTA----SDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTA 197
Y K ++ + M +T +L F NQ L + + A + F K+D E
Sbjct: 203 YVAAKWNIQNKMTSTDFLVLNF-NQDLAKELTSK--TQATVVPFSTQEKVDGAYLEDGQL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F V S++ V G HN N A+A ++V L GVD + + T+ H
Sbjct: 260 YFRGEVVMAASEI-----GVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R+Q V +I+GV + +DSK+TN+ AT L K +++ GG + N F++L
Sbjct: 313 RLQFVD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDEL 365
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
+ + + ++ G S + + G + ++ DA A +AT GD ++LSP
Sbjct: 366 VPDITGLKKMVILGQSAERVKRAADKAG--VAYMDATDIADATRKAYELATQGDVVLLSP 423
Query: 378 GCASFDEFRNFEHRGMVF 395
AS+D + NFE RG +F
Sbjct: 424 ANASWDMYANFEVRGDLF 441
>gi|343503811|ref|ZP_08741617.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
ichthyoenteri ATCC 700023]
gi|342813897|gb|EGU48854.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
ichthyoenteri ATCC 700023]
Length = 438
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 124/416 (29%), Positives = 198/416 (47%), Gaps = 67/416 (16%)
Query: 5 WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + G+A ++ +G V+ +++ A + + ++A+TG+NGKSTV
Sbjct: 65 WLLEADLVVTNPGIALATPEIQQIIAAGIPVVGDIELFAWHVDK--PVIAITGSNGKSTV 122
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
G + G VGGN+G P A P+ + V+E+SS+Q+E +
Sbjct: 123 TDMTGVVAKAAGWNVGVGGNIGVP----ALDLFEQPAD-----LYVLELSSFQLETTSS- 172
Query: 118 FCPTVSVV-LNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQHLNEA 171
P V+ LNL+ DH++R++ M +Y K +F H +VN P +++L E
Sbjct: 173 -LPLVAAAFLNLSEDHMDRYQGMADYRQAKLRIFDHAKVCVVNADDKQTYPDTDKNLVE- 230
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNA--AVA 229
F+L + ++ D E A + L + + ++GRHN N+ +A
Sbjct: 231 -----FSLEQPSSASVIEQD------GVEFLAYNGEAILAVDELSLVGRHNVANSLVVIA 279
Query: 230 ALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL-- 287
L+ G+D+ +EA+ S + HR Q+V D +G+ WV+DSKATN+ +T L
Sbjct: 280 LLNAAGVDVSAGLEAMKSYNGLT----HRCQVV-ADNRGIKWVNDSKATNVASTLAALSG 334
Query: 288 MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLS 347
++L G K +L+GG K G + + ++ PLN C FG G
Sbjct: 335 LNLSG-KLFLLVGGNGK---GADFSDLAPVLAPLNVQLC--CFGADGDQF---------- 378
Query: 348 IPCFAVAN----MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
+P A A M+D V A +GD ++LSP CASFD+F NF RG F LA
Sbjct: 379 MPLHASAQRFYTMQDIVEWAAPQLQSGDMVMLSPACASFDQFSNFMARGDAFAHLA 434
>gi|225023739|ref|ZP_03712931.1| hypothetical protein EIKCOROL_00603 [Eikenella corrodens ATCC
23834]
gi|224943621|gb|EEG24830.1| hypothetical protein EIKCOROL_00603 [Eikenella corrodens ATCC
23834]
Length = 451
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 116/391 (29%), Positives = 187/391 (47%), Gaps = 46/391 (11%)
Query: 23 QSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ + KI+A+TG+NGK+TV + VG + G++ V GN+G P
Sbjct: 95 QAGGRVLGDVEILAHELSGKRNKIIAITGSNGKTTVTSLVGHLCRECGLDTVVAGNIGTP 154
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + V V+E+SS+Q+E + + + VLN++ DHL R+ + +
Sbjct: 155 VLEAYED-----RQEQSADVWVLELSSFQLENTD-HLNAAAAAVLNISEDHLNRYDDLLD 208
Query: 142 YALTKCHLFS----HMVNTKLGLLPFGNQHLNEAIKGHRFNLA-----WIGAFPG-VKID 191
YA K +F ++N L + E RF+L W A G +K
Sbjct: 209 YAHAKDKIFRGSGVQVINADDALCRAMKRSGREV---RRFSLQQETDYWFDAASGYLKHG 265
Query: 192 TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
E A+ ++P G LHN + A IG+ E L +
Sbjct: 266 AETLIAAADIPLQG------LHNAANVLAALALCEA----------IGLPREQLLRHVRT 309
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQES 311
+ PHR++ + + GV ++DDSK TN+ AT + L+ ++ GGQ K GQ+
Sbjct: 310 FKGLPHRVEKIG-EKNGVVFIDDSKGTNVGATEAAIAGLQ-SPLFLIAGGQGK---GQDF 364
Query: 312 NGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD 371
+ ++ R V+ G I + L G + A++++AV A R+A GD
Sbjct: 365 TPLKNVLP--GKARAVLLIGEDAPQIRRDLA--GCGVEMMDCASLQEAVQTAYRLAEPGD 420
Query: 372 AIVLSPGCASFDEFRNFEHRGMVFQELAFSA 402
++LSP CASFD F+ + HR VF E AF A
Sbjct: 421 IVLLSPACASFDMFKGYAHRSQVFIE-AFEA 450
>gi|90416334|ref|ZP_01224266.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
proteobacterium HTCC2207]
gi|90332059|gb|EAS47273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [marine gamma
proteobacterium HTCC2207]
Length = 450
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 115/365 (31%), Positives = 182/365 (49%), Gaps = 45/365 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++ +TG+NGKSTV VG+M G++ VGGNLG P+ L + Q+ V+
Sbjct: 112 VVLITGSNGKSTVTKLVGEMAQASGLKVGVGGNLGTPM---------LDLLDDENQLYVI 162
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF---SHMVNTKLGLL 161
E+SS+Q+E+ +S +LN++PDH++R+ ++ Y K +F S ++ + L
Sbjct: 163 ELSSFQLELVTDTRG-AISAILNISPDHMDRYADLQQYHAAKHRIFRGASQVIFNRQDAL 221
Query: 162 PFGNQHLNEAIKG-----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
N L+ A+K +R +LA G +D E +T A G+ ++ +
Sbjct: 222 T--NPLLSVAVKLCNFGLNRPDLANFGL-----LDEEGETWL----AYGLKPLMRSAELA 270
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
+ GRHN NA A G+D+ A+ +T+ HR + V + GVT++DDSK
Sbjct: 271 LKGRHNIANALAALALGQ--AAGLDMAAMLTTLTRFTGLSHRCEYVAT-VDGVTYIDDSK 327
Query: 277 ATNLEATCT---GLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGY 332
TN+ AT G + +++ GGQ K N F +L PL + + FG
Sbjct: 328 GTNIGATVAALNGFGEDDRANLILIAGGQGKGQN------FTELKAPLGKFVKLLALFGE 381
Query: 333 SGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 392
I +TL + +A+++ AV+ AR +A GD ++LSP CASFD F FE RG
Sbjct: 382 DAQSIAETLSG---TTQIETLASLQAAVDCARAVAQPGDIVLLSPACASFDMFSGFEERG 438
Query: 393 MVFQE 397
FQ+
Sbjct: 439 RCFQQ 443
>gi|393786143|ref|ZP_10374281.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides nordii
CL02T12C05]
gi|392660507|gb|EIY54119.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides nordii
CL02T12C05]
Length = 462
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 112/396 (28%), Positives = 193/396 (48%), Gaps = 57/396 (14%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 100 LKAQGTPIISEIEFAGRYT--DAKMVCITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 157
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ K V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 158 SL--------ALQVAEGKHDYYVIELSSFQLD--NMYEFRANIAVLMNITPDHLDRYDHC 207
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWI---GAFPGVKI 190
M+NY K + + + P + L + +K H + A + GA V+
Sbjct: 208 MQNYIDAKFRITQNQTQDDAFVFWNDDPIIKRELEKHGLKAHLYPFAAVKEDGAIAYVE- 266
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTI 249
D E K + ++ + + G+HN +N+ A +S L G+ E + +
Sbjct: 267 DNEVKITE------PIAFNMEQEKLALTGQHNLYNSLAAGISANLA---GITKEDIRKAL 317
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
+ HR++ V R + G+ +++DSKATN+ + L + K V++LGG+ K
Sbjct: 318 SDFKGVEHRLEKVAR-VGGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK----- 370
Query: 310 ESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGL-------SIPCFAV-ANMKDAVN 361
N + + IE L +C L++ L N L +P V MKDAV
Sbjct: 371 -GNDYTE-IEDLVREKC-------SALVYLGLHNEKLHAFFDRFGLPVADVQTGMKDAVE 421
Query: 362 HARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
A ++A G+ ++LSP CASFD F+++E RG F+E
Sbjct: 422 AAYKLAKKGETVLLSPCCASFDLFKSYEDRGDQFKE 457
>gi|254449012|ref|ZP_05062466.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
proteobacterium HTCC5015]
gi|198261406|gb|EDY85697.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
proteobacterium HTCC5015]
Length = 447
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 106/353 (30%), Positives = 176/353 (49%), Gaps = 31/353 (8%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV VG M G+ +GGNLG P AL P + V+
Sbjct: 112 LIAITGSNGKSTVTELVGSMAQSAGMTVAIGGNLGTP---------ALEILAPAVDLYVL 162
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E + P + VLN++ DH++R+ +++ YA K SH +++ ++
Sbjct: 163 ELSSFQLETV-QSLRPKAATVLNISEDHMDRYSSIEAYAAAKAAAISH---SEVAVINRQ 218
Query: 165 NQHLNEAIK-GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
++ + + G R + G ++ A T ++ ++ ++K+ G HN+
Sbjct: 219 DKRVAAMLSDGERVTFGSDSSEAGYGLERLAGTVWLTAQGERLI---EVSDLKICGEHNW 275
Query: 224 HNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEAT 283
NA A G+ EA + ++ PHR + V + GV +++DSKATN+ AT
Sbjct: 276 LNALAALALAD--AAGIAREASLAALKEFAGLPHRTEWVA-ERNGVIYINDSKATNVGAT 332
Query: 284 CTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLV 342
+ V++ GG K GQ+ F L L + V+ G+ LI + L
Sbjct: 333 AAAVTGFD-QPLVLIAGGVGK---GQD---FAPLKTSLKARAKAVVLLGHDAELIGQAL- 384
Query: 343 NNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
G + + VA+M +AV+ A +A GD ++LSP CASFD+++ FE RG F
Sbjct: 385 --GDEVAQYRVASMSEAVSRATELAECGDVVLLSPACASFDQYQGFEARGEDF 435
>gi|119505122|ref|ZP_01627198.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine gamma
proteobacterium HTCC2080]
gi|119459104|gb|EAW40203.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine gamma
proteobacterium HTCC2080]
Length = 453
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 126/382 (32%), Positives = 178/382 (46%), Gaps = 39/382 (10%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
RVM ++D V S ++ +TG+NGKSTV V ML+ G VGGN G P
Sbjct: 98 RVMGDIDLF--VAAASAPVIGITGSNGKSTVTAMVASMLSACGKRVAVGGNFGTP----- 150
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
AL V+E+SS+Q+E V+ VLN++ DHL+RH +M Y K
Sbjct: 151 ----ALDLLDQAVDFYVLELSSFQLERAQPLKL-AVATVLNVSADHLDRHGSMPRYHHAK 205
Query: 147 CHLF--SHMV--NTKLGL-LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
+F +H V N L LP + G + W P +D V
Sbjct: 206 HKIFQGAHAVVANRADSLTLPL--------LDGGTRQVLWRPTDP--DLDEFGVRQLDGV 255
Query: 202 PAV--GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
P V G + +K+ G HN +N A + LD+ +E L + ++ PHR
Sbjct: 256 PYVCCGFTPLFPVSELKLKGMHNLNNVLAALALGVALDL--PLERLIAGLKDFSGLPHRC 313
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319
++V D GV+W++DSK TN+ AT L L + V+L+ G V GQ+ L E
Sbjct: 314 ELVLDD-AGVSWINDSKGTNVGATRAALAGLGAQENVVLIAG--GVGKGQDFTAL--LPE 368
Query: 320 PLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 379
NH R V+T G S I L G P V +++DAV A +A GD ++LSP C
Sbjct: 369 VRNHCRRVLTLGESAREIELAL---GAHTPVQRVDSLEDAVAKAAALAQAGDVVLLSPAC 425
Query: 380 ASFDEFRNFEHRGMVFQELAFS 401
ASFD + F+ RG F++ S
Sbjct: 426 ASFDLYSGFKARGDAFRDAVMS 447
>gi|345304539|ref|YP_004826441.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodothermus
marinus SG0.5JP17-172]
gi|345113772|gb|AEN74604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodothermus
marinus SG0.5JP17-172]
Length = 455
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 118/406 (29%), Positives = 197/406 (48%), Gaps = 57/406 (14%)
Query: 19 ACLLQSGKR----VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74
A L+Q +R V SE++ A+ I+AVTGTNGK+T + +G + G V
Sbjct: 82 APLVQQARRIGLPVYSEIEVASWFC--RAPIVAVTGTNGKTTTTSLIGYIFRRAGRRTIV 139
Query: 75 GGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLE 134
GN+G P S+ + P + V+EVSS+Q++ F P VSV+LN+TPDHL+
Sbjct: 140 AGNIGYPFSDYVL------DTTPD-DIVVLEVSSFQLD-HVATFRPRVSVLLNITPDHLD 191
Query: 135 RHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAI-KGHRFNLAWIGAFPGVKIDT 192
R+ YA +K +F++ + + + ++ + A + HR + F
Sbjct: 192 RYNYNFNEYAQSKFRIFANQRDADVLVYNHDDELIRMAAERAHRKRGLRVLGF------- 244
Query: 193 EAKTASFEVPAVGVVSQ--------------LQLHNMKVMGRHNYHNAAVAALSVLGLDI 238
+ E+PA V + + + + GRHN +N+ AA++ +++
Sbjct: 245 ---SQRTELPAGAFVRDGYLILRIEQQEEVLMHANELALRGRHNLYNSLAAAVAARVMEV 301
Query: 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL 298
DV + ++ PHR++ V R++ GV +V+DSKATN+ A L + C I+
Sbjct: 302 RNDV--VRESLASFEGVPHRLEFV-RELDGVRYVNDSKATNVNAVWYAL---ESFSCPIV 355
Query: 299 LGGQAKVLNGQESNGFEKLIEPLNHH--RCVITFGYSGVLIWKTLVNNGLSIP-CFAVAN 355
L + G++ +++PL R ++ G S + + L G +P +
Sbjct: 356 L-----IAGGRDKGNDYSVLKPLVKEKVRALVAIGESADKLLREL---GPLVPHAVKAQS 407
Query: 356 MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 401
M++A+ +AR A GD ++LSP CASFD F N+E RG F+ L S
Sbjct: 408 MEEAIQYARVFAEPGDVVLLSPACASFDMFENYEDRGDTFRRLVMS 453
>gi|293365023|ref|ZP_06611740.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
oralis ATCC 35037]
gi|307702267|ref|ZP_07639227.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
oralis ATCC 35037]
gi|291316473|gb|EFE56909.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
oralis ATCC 35037]
gi|307624280|gb|EFO03257.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
oralis ATCC 35037]
Length = 450
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 107/377 (28%), Positives = 182/377 (48%), Gaps = 31/377 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQRGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ + M +L F NQ L + + + + K+D E
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKEL-ATKTQATVVPFSTQEKVDGAYLEDGQLY 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F V S++ V G HN N A+A ++V L GVD + + T+ HR
Sbjct: 261 FRGEVVMAASEI-----GVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q V +IQGV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQFVD-EIQGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
+ + ++ G S + + G++ ++ DA A +AT GD ++LSP
Sbjct: 367 PDITGLKKMVILGQSAERVKRAADKAGVA--YVDATDIADATRKAYELATQGDVVLLSPA 424
Query: 379 CASFDEFRNFEHRGMVF 395
AS+D + NFE RG +F
Sbjct: 425 NASWDMYANFEVRGDLF 441
>gi|28871545|ref|NP_794164.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
syringae pv. tomato str. DC3000]
gi|422658107|ref|ZP_16720544.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. lachrymans str. M302278]
gi|38257960|sp|Q87WY3.1|MURD_PSESM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|28854796|gb|AAO57859.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
syringae pv. tomato str. DC3000]
gi|331016732|gb|EGH96788.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. lachrymans str. M302278]
Length = 448
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 116/369 (31%), Positives = 177/369 (47%), Gaps = 53/369 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + VS+L
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKFLAFQFENLMPVSEL-- 268
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
KV G HN A A LG +G+ +A+ S++ HR Q + R+ GV +
Sbjct: 269 ---KVRGAHN--QANALAALALGHAVGLPFDAMLSSLREFTGLEHRCQWL-RERNGVDYY 322
Query: 273 DDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVI 328
+DSKATN+ A + L G K V++ GG K + F L P+ + R +
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIGGKLVLIAGGDGKGAD------FSGLRAPVAKYCRAAV 376
Query: 329 TFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 388
G LI + L G ++P V ++ A + +A GDA++LSP CAS D F+N+
Sbjct: 377 LLGRDAELIAQAL---GDAVPLIRVDTVQAAAERSAELAQRGDAVLLSPACASLDMFKNY 433
Query: 389 EHRGMVFQE 397
E RG VF +
Sbjct: 434 EERGRVFAQ 442
>gi|402496530|ref|YP_006555790.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Wolbachia
endosymbiont of Onchocerca ochengi]
gi|398649803|emb|CCF77973.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Wolbachia
endosymbiont of Onchocerca ochengi]
Length = 446
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 185/376 (49%), Gaps = 48/376 (12%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
++ S+++ + ++ K++ VTGTNGKST + +G +L G + VGGNLG P+ +
Sbjct: 96 KIKSDIELFLEGKAKNQKVIGVTGTNGKSTTTSLIGHILKSAGKKVAVGGNLGVPVFDL- 154
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
++ V+E SS+Q+E+ N+ ++V+LN+TPDH++RH +M+NY K
Sbjct: 155 ---------NRNTEICVIEFSSFQLELINEVNLD-IAVLLNITPDHIDRHGSMENYIAIK 204
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
L + +G + I FN F G K+ A + SF+ P G+
Sbjct: 205 SKLINGSRVAAIG--------CDSEITAGIFN-----KFTGNKVPISA-SMSFQYPDTGI 250
Query: 207 VSQLQLH--NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+L+ H ++K+ N N A AA +V L + VD + I+ HR +++ +
Sbjct: 251 HLELENHVSDVKINLISNSENVA-AACTVCKL-LRVDSNIIIDGIKSFSGLKHRNELLGK 308
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH 324
I V +V+DSKATN E++ ++ K ++GG++K G E L + +
Sbjct: 309 -IANVLFVNDSKATNAESSEKAILSYKN--IYWIVGGKSK------DGGIESLRKHFANI 359
Query: 325 RCVITFGYSGVLIWKTLVNNGLSIPCFAVAN-----MKDAVNHARRMATNGDAIVLSPGC 379
+ G S T+ N + C ++AN K+A+N + ++ SP C
Sbjct: 360 KKAFLIGESTEAFANTMENKIDFVKCCSLANAFKLAFKEAINSKEEI-----TVLFSPAC 414
Query: 380 ASFDEFRNFEHRGMVF 395
ASFD+++NFE RG F
Sbjct: 415 ASFDQWKNFEERGEAF 430
>gi|383938512|ref|ZP_09991721.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pseudopneumoniae SK674]
gi|418973968|ref|ZP_13521907.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pseudopneumoniae ATCC BAA-960]
gi|383346187|gb|EID24252.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pseudopneumoniae ATCC BAA-960]
gi|383714572|gb|EID70569.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pseudopneumoniae SK674]
Length = 450
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 111/378 (29%), Positives = 183/378 (48%), Gaps = 33/378 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A S K V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTA----SDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTA 197
Y K ++ + M +L F NQ L + + A + F + K+D E
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKELASK--TQATVVPFSTLEKVDGAYLEDGQL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F V S++ V G HN N A+A ++V L GVD + + T+ H
Sbjct: 260 YFRGEVVMAASEI-----GVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R+Q V +IQGV + +DSK+TN+ AT L K V++ GG + N F+ L
Sbjct: 313 RLQFVD-EIQGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDDL 365
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
+ + + ++ G S + + G++ ++ DA A +AT GD ++LSP
Sbjct: 366 VPDITGLKKMVILGQSAERVKRAADKAGVA--YVDATDIADATRKAYELATQGDVVLLSP 423
Query: 378 GCASFDEFRNFEHRGMVF 395
AS+D + NFE RG +F
Sbjct: 424 ANASWDMYANFEVRGDLF 441
>gi|397904564|ref|ZP_10505469.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caloramator
australicus RC3]
gi|397162390|emb|CCJ32803.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caloramator
australicus RC3]
Length = 453
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 106/369 (28%), Positives = 175/369 (47%), Gaps = 42/369 (11%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
KI +TG++GK+T T + +ML G F+GGN+G PL E + V
Sbjct: 113 KIFGITGSDGKTTTTTLIYEMLKKQGYNVFLGGNIGIPLFEKIEEI-------KEDDYVV 165
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+ + P VSV+ NL+P+HL+ HK M+ Y +K ++F H + +L
Sbjct: 166 LELSSFQLMDFD--VSPIVSVITNLSPNHLDYHKDMEEYVNSKKNIFLHQNERGITILNK 223
Query: 164 GNQ---HLNEAIKGH-RFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHN--MKV 217
N+ + + +KG RF AF + ++ + V + H +++
Sbjct: 224 DNEITYSMRDEVKGEIRFFSMKEKAF-----------SYYDNGKLYVNDEFICHKDEVRL 272
Query: 218 MGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
+G HN N A +V G V +E + HR++ V R+I GV + +DS A
Sbjct: 273 LGMHNIENLLTAFAAVYGF---VSIENMRYVAMNFGGVAHRIEFV-REINGVKFYNDSIA 328
Query: 278 TNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP-LNHHRCVITFGYSGVL 336
++ T GL K +++ GG K + FE L E ++ + +I G +
Sbjct: 329 SSPTRTLAGLNSF-DRKVILIAGGYDKNV------PFEPLAEKGIDKIKTLILLGMTKDK 381
Query: 337 IWKTLVN----NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 392
I ++ G + ++++AV A +A GD + LSP CASFD F+NFE RG
Sbjct: 382 IKSAFLDVMNKTGKRVDIIETNSLEEAVEKAYEVAEYGDIVTLSPACASFDMFKNFEERG 441
Query: 393 MVFQELAFS 401
F+E+ +
Sbjct: 442 NRFKEIVLN 450
>gi|163751822|ref|ZP_02159038.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
benthica KT99]
gi|161328307|gb|EDP99468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
benthica KT99]
Length = 449
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 110/370 (29%), Positives = 185/370 (50%), Gaps = 42/370 (11%)
Query: 34 FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALP 93
FA V S ++ +TG+NGKSTV T VG+M G+ VGGN+G P+ L
Sbjct: 100 FARAVKNSSSCVIGITGSNGKSTVTTLVGEMAKAAGLNYAVGGNIGIPV---------LD 150
Query: 94 SSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHM 153
+ + ++E+SS+Q+E + C + LN++ DH++R++ ++ Y K L+
Sbjct: 151 LLQSPIDLYILELSSFQLETTHSLNC-IAATCLNISEDHMDRYRDLEAYRQAKLSLYDQ- 208
Query: 154 VNTKLGLLPFGNQ--HLNEAIKGHRFNL-AWIGAFPGVKIDTEAKTASFEVPAVGVVSQL 210
+K L + N+ + + F L + + GVK D + + E+ +
Sbjct: 209 --SKRALFNREDSLTQPNDPMDQNSFGLTSPVNDEWGVK-DGKIVHGASEI--------V 257
Query: 211 QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVT 270
L ++ ++G HN+ N +AA++ L G++ E++ + HR ++V +I V+
Sbjct: 258 SLDDVAIVGSHNHAN-LIAAMA-LAYHAGIEKESMIEVAKHFTGLAHRCELV-ANIDAVS 314
Query: 271 WVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVI 328
+V+DSKATN+ AT L L H +++ GG K G + E +++ + H +I
Sbjct: 315 YVNDSKATNVGATVAALEGLSEHLGDIILIAGGDGK---GADFGPLEAVLDKVTH---LI 368
Query: 329 TFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 388
T G G I N+ V +M DAV A +AT GD ++LSP CAS D ++NF
Sbjct: 369 TLGKDGDKIAALKDNSK------RVDSMADAVKQAAGLATAGDIVLLSPACASLDMYKNF 422
Query: 389 EHRGMVFQEL 398
RG F++L
Sbjct: 423 MARGDDFRQL 432
>gi|427384544|ref|ZP_18881049.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
oleiciplenus YIT 12058]
gi|425727805|gb|EKU90664.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
oleiciplenus YIT 12058]
Length = 444
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 111/393 (28%), Positives = 190/393 (48%), Gaps = 51/393 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G V+SE++FA + K++ +TG+NGK+T + + + G+ + GN+GN
Sbjct: 82 LKEQGTPVISEIEFAGRYT--HAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGN 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL + + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVATEQHDYYVIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID-----TE 193
M+ Y K + + + + + + H A + F VK D E
Sbjct: 190 MQKYVDAKFRITQNQTPEDAFIFWNDDPIIKRELDKHGLR-AHLYPFSAVKEDGAIAYVE 248
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTIEIL 252
P + ++ + + G HN +N+ A +S L G++ E + +
Sbjct: 249 DGEVEINEP---IAFNMEQEKLALQGTHNLYNSLAAGISANLA---GIEKEYIRRALSDF 302
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
+ HR++ V ++GV +++DSKATN+ + L +K K V++LGG+ K N
Sbjct: 303 KGVEHRLEKVAT-VRGVEFINDSKATNVNSCWYALQSMKT-KTVLILGGKDK------GN 354
Query: 313 GFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGL-------SIPCFAV-ANMKDAVNHAR 364
+ + IE L +C L++ L N L +P V MKDAV+ A
Sbjct: 355 DYTE-IEDLVRDKC-------SALVYLGLHNEKLHDFFDRMGLPVADVQTGMKDAVDAAF 406
Query: 365 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
R+A G+ ++LSP CASFD F+++E RG F+E
Sbjct: 407 RLAKKGETVLLSPCCASFDLFKSYEDRGDQFKE 439
>gi|188532900|ref|YP_001906697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Erwinia
tasmaniensis Et1/99]
gi|188027942|emb|CAO95799.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia
tasmaniensis Et1/99]
Length = 438
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 116/366 (31%), Positives = 173/366 (47%), Gaps = 43/366 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + VGGN+G P A + P+ Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMARAAGWQVGVGGNIGLP----ALTLLQQPA-----QLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + + +LN+T DH++R+ M+ Y K ++ + +
Sbjct: 158 ELSSFQLETTSS-LKAAAATLLNVTEDHMDRYPLGMQQYRAAKLRIYENATACVVN---- 212
Query: 164 GNQHLNEAIKGHRFNLAWIGA-FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ + I+G GA F + + + V V++ ++H ++G+HN
Sbjct: 213 ADDAMTMPIRGADARCVSFGADFGDYHLTRQQGSTWLRVQGEKVLNTDEMH---LVGQHN 269
Query: 223 YHNAAVAALSV--LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
Y NA A +GL ++AL + PHR Q+VH GV W++DSKATN+
Sbjct: 270 YTNALAALALADAVGLPRATSLKALTT----FNGLPHRFQLVHEH-NGVRWINDSKATNV 324
Query: 281 EATCTGLMDLKGHKCV-ILLGGQAKVLNGQESNGFEKLIEPLNHHRC-VITFGYSGVLIW 338
+T L L + +LLGG K S F L L R V FG G +
Sbjct: 325 GSTEAALNGLHPAGTLWLLLGGDGK------SADFTPLTRYLQGERIRVYCFGRDGAELA 378
Query: 339 KTLVNNGLSIPCFAV--ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
P AV A M +AV GD ++LSP CAS D+F+NFE RG +F
Sbjct: 379 ALR-------PEIAVQTATMAEAVRQIAAQVRPGDLVLLSPACASLDQFKNFEQRGDLFA 431
Query: 397 ELAFSA 402
+LA A
Sbjct: 432 QLAREA 437
>gi|418089085|ref|ZP_12726243.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA43265]
gi|418116417|ref|ZP_12753391.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 6963-05]
gi|419439903|ref|ZP_13979957.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA40410]
gi|353762772|gb|EHD43330.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA43265]
gi|353790255|gb|EHD70638.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 6963-05]
gi|379580514|gb|EHZ45404.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA40410]
Length = 450
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 185/374 (49%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K + V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDK---DMLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|148997231|ref|ZP_01824885.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP11-BS70]
gi|168575358|ref|ZP_02721294.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae MLV-016]
gi|307067304|ref|YP_003876270.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
pneumoniae AP200]
gi|419470663|ref|ZP_14010522.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA07914]
gi|419492830|ref|ZP_14032557.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47210]
gi|419503514|ref|ZP_14043185.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47760]
gi|421238336|ref|ZP_15694905.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2071247]
gi|421244529|ref|ZP_15701032.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2081685]
gi|421313875|ref|ZP_15764465.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47562]
gi|147756931|gb|EDK63971.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP11-BS70]
gi|183578542|gb|EDT99070.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae MLV-016]
gi|306408841|gb|ADM84268.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
pneumoniae AP200]
gi|379545379|gb|EHZ10518.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA07914]
gi|379594868|gb|EHZ59677.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47210]
gi|379609112|gb|EHZ73853.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47760]
gi|395602923|gb|EJG63064.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2071247]
gi|395610187|gb|EJG70266.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2081685]
gi|395914375|gb|EJH25219.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47562]
Length = 450
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 184/374 (49%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGEHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|225856379|ref|YP_002737890.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae P1031]
gi|225858514|ref|YP_002740024.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae 70585]
gi|387626084|ref|YP_006062256.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae INV104]
gi|417693620|ref|ZP_12342809.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47901]
gi|444381759|ref|ZP_21179965.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PCS8106]
gi|444385444|ref|ZP_21183517.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PCS8203]
gi|444409214|ref|ZP_21205811.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0076]
gi|444411969|ref|ZP_21208295.1| putative UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Streptococcus pneumoniae PNI0153]
gi|444422074|ref|ZP_21217738.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0446]
gi|254766057|sp|C1C648.1|MURD_STRP7 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|254766061|sp|C1CJF2.1|MURD_STRZP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|225722058|gb|ACO17912.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 70585]
gi|225725603|gb|ACO21455.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae P1031]
gi|301793866|emb|CBW36259.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae INV104]
gi|332204703|gb|EGJ18768.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47901]
gi|444250046|gb|ELU56530.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PCS8203]
gi|444254011|gb|ELU60458.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PCS8106]
gi|444275301|gb|ELU80928.1| putative UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Streptococcus pneumoniae PNI0153]
gi|444279948|gb|ELU85328.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0076]
gi|444288570|gb|ELU93462.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0446]
Length = 450
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 184/374 (49%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|417924146|ref|ZP_12567598.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
mitis SK569]
gi|342836200|gb|EGU70416.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
mitis SK569]
Length = 450
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 110/378 (29%), Positives = 184/378 (48%), Gaps = 33/378 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A S K V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTA----SDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTA 197
Y K ++ + M +T +L F NQ L + + A + F K+D E
Sbjct: 203 YVAAKWNIQNKMTSTDFLVLNF-NQDLAKELTSK--TQATVVPFSTQEKVDGAYLEDGQL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F V S++ V G HN N A+A ++V L GVD + + T+ H
Sbjct: 260 YFRGEVVMAASEI-----GVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R+Q V +I+GV + +DSK+TN+ AT L K +++ GG + N F++L
Sbjct: 313 RLQFVD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDEL 365
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
+ + + ++ G S + + G + ++ DA A +AT GD ++LSP
Sbjct: 366 VPDITGLKKMVILGQSAERVKRAADKAG--VAYVDATDIADATRKAYELATQGDVVLLSP 423
Query: 378 GCASFDEFRNFEHRGMVF 395
AS+D + NFE RG +F
Sbjct: 424 ANASWDMYANFEVRGDLF 441
>gi|376296424|ref|YP_005167654.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
desulfuricans ND132]
gi|323458985|gb|EGB14850.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
desulfuricans ND132]
Length = 434
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 121/384 (31%), Positives = 179/384 (46%), Gaps = 54/384 (14%)
Query: 18 LACLLQS--GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVG 75
LA +L+ + V+SEL+FA+ I ILAVTG+NGK+T T + ++L G F G
Sbjct: 92 LAPVLEGVPARNVVSELEFASWFI--EAPILAVTGSNGKTTTTTLISEILEKAGRRVFTG 149
Query: 76 GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLER 135
GN+G PL C L +P ++ V+EVSS+Q++ + F P V + LN + +HL+
Sbjct: 150 GNIGVPL------CEYLLDMEPA-EIIVLEVSSFQLQNCLR-FKPHVGLFLNFSANHLDY 201
Query: 136 HKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAK 195
H + Y K HLFS M + LL ++ L+ + G F A I F
Sbjct: 202 HADLDEYLDAKLHLFSRMGPEDIALL---HESLHPLLDGRSFTEAHIEWF--------GP 250
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T FE P ++G HN N A +V GV E I R
Sbjct: 251 TNRFEAP-------------HLLGEHNRSNVEAAWQAV--KRFGVSEEQAAEAIRDFRPL 295
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
PHR++ V + GV +V+DSKAT L+A + + IL+GG V G + F
Sbjct: 296 PHRIEPVA-ERNGVLYVNDSKATTLDAAEAAVHAFE-RPVRILMGG---VWKGGDVAKFA 350
Query: 316 KLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVA---NMKDAVNHARRMATNGDA 372
+ I+ V FG S ++ L + F+V + +AV +A GD
Sbjct: 351 EGIK--GRVAAVGLFGGSREILEPELARH------FSVTWDETLTEAVRRQAGLAAPGDV 402
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQ 396
++LSP +SFD++ N RG F+
Sbjct: 403 VLLSPATSSFDQYHNMAERGADFK 426
>gi|289677699|ref|ZP_06498589.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. syringae FF5]
Length = 448
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 114/370 (30%), Positives = 180/370 (48%), Gaps = 55/370 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYNGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + + +
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENSEKYLAFQFENL-----MPV 265
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
+KV G HN A A LG +G+ +A+ +++ HR Q + R+ GV +
Sbjct: 266 RELKVRGAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL-REHDGVHYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCV 327
+DSKATN+ A + D+ G K V++ GG K + F L P+ + R
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGAD------FSGLRAPVAKYCRAA 375
Query: 328 ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ G LI + L G ++P V ++ AV H+ ++A GDA++LSP CAS D F+N
Sbjct: 376 VLLGRDAELIAQAL---GDAVPLVRVDTVQAAVEHSAKLALRGDAVLLSPACASLDMFKN 432
Query: 388 FEHRGMVFQE 397
+E RG VF +
Sbjct: 433 YEERGRVFAQ 442
>gi|346224875|ref|ZP_08846017.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Anaerophaga
thermohalophila DSM 12881]
Length = 450
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 112/382 (29%), Positives = 185/382 (48%), Gaps = 43/382 (11%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++FA + S K++ +TG+NGK+T + ++ G++ + GN+G L+
Sbjct: 90 VISEIEFAGRY--SSAKMIGITGSNGKTTTAIWTYHLMKKGGLDVVLAGNVGTSLARQ-- 145
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTK 146
L P F V+E+SS+Q+E + C T +V+ N+TPDHL+R+ +NYA K
Sbjct: 146 ----LLKGDPGF--FVIELSSFQLEGMYDFKCNT-AVITNITPDHLDRYDHRFENYADAK 198
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIK-----GHRFNLAWIGAF-PGVKIDTEAKTAS-- 198
+ ++ + + ++ + +K GHR A+ + G +D + +
Sbjct: 199 FRILNNHDEDSVFVFNAHDKEIMTRLKKMKYPGHRCPFAYDNIYGEGACLDKDKIVVNTP 258
Query: 199 ---FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
F P VS+L L G+HN NA A L+ L G VEA+ +
Sbjct: 259 RQHFTFP----VSELAL-----AGKHNLSNAMAATLAALS--AGTPVEAVKEGLSDFSGV 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
HR++ V ++ G +++DSKATN +A L ++ + + GG K G + + E
Sbjct: 308 EHRLENVE-EVNGALYINDSKATNTDAAWFALESME-RPVIWIAGGTDK---GNDYSSLE 362
Query: 316 KLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
+L + + +I G + G ++MK+AV A +MA D ++L
Sbjct: 363 EL--AVQKVKVLICLGVDNSKLVSFF--KGKIPEIIETSSMKEAVRRAWKMAEPEDVVLL 418
Query: 376 SPGCASFDEFRNFEHRGMVFQE 397
SP CASFD F NFEHRG F+E
Sbjct: 419 SPACASFDLFENFEHRGRQFKE 440
>gi|345883073|ref|ZP_08834522.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Prevotella sp.
C561]
gi|345044111|gb|EGW48158.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Prevotella sp.
C561]
Length = 443
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 105/384 (27%), Positives = 195/384 (50%), Gaps = 36/384 (9%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L+ G ++SE++FA + + K++ +TG+NGK+T + + + G +A + GN+GN
Sbjct: 82 LMAQGTHIISEIEFAGRYT--NSKMICITGSNGKTTTTSLIYHIFKDAGYDAGLAGNIGN 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ + ++E+SS+Q++ N Y F ++++LN+TPDHL+R+
Sbjct: 140 SL--------ALQVAEDPHEYYIIELSSFQLD--NMYDFRANIAILLNITPDHLDRYDYK 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+NYA K + + TK + N + +F++ + +P ++ +
Sbjct: 190 FENYADAKMRIIQNQ--TKEDSFIYWNDDPVIKKELEKFDVHAV-CYPFSELKEKGSIGY 246
Query: 199 FEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSVLGLDI-GVDVEALNSTIEILR 253
E + ++ ++ + G+HN +N+ A ++ DI G+ E + ++
Sbjct: 247 IEEGQYTIEQPEPFNMEQEDLSLTGKHNIYNSLAAGIAS---DISGIKKENIRKSLSDFP 303
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
HR++ V + + GV +++DSKATN++A C ++ V++LGG+ K G + +
Sbjct: 304 GVEHRLEKVCK-VAGVQYINDSKATNVDA-CWYALESMNTPTVLILGGKDK---GNDYSV 358
Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVN-NGLSIPCFAVANMKDAVNHARRMATNGDA 372
+ L++ +C I Y G K N + L IP +MKD V +A G+
Sbjct: 359 LKDLVK----QKC-IGLVYLGADNKKLHDNFDSLGIPVRDTHSMKDCVTACAELAKPGNT 413
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQ 396
++LSP CASFD F+N E RG F+
Sbjct: 414 VLLSPCCASFDLFKNMEDRGEQFK 437
>gi|322387387|ref|ZP_08060997.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
infantis ATCC 700779]
gi|419842690|ref|ZP_14366027.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
infantis ATCC 700779]
gi|321141916|gb|EFX37411.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
infantis ATCC 700779]
gi|385703635|gb|EIG40748.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
infantis ATCC 700779]
Length = 450
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 108/377 (28%), Positives = 181/377 (48%), Gaps = 31/377 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIVGITGSNGKTTTTTMIGEVLTAAGQNGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + ++
Sbjct: 151 ASQVA-------QTATDKDTLVMELSSFQL-MGIQEFHPEIAVITNLMPTHIDYHGSFED 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ S+M +L F NQ L + + + N A + K+D E
Sbjct: 203 YVAAKWNIQSNMTAADYLVLNF-NQELAKEL-ATKTNAAVVPFSTLEKVDGAYLEDGLLY 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F V + + V G HN N A+A ++V L GVD E + T+ HR
Sbjct: 261 FRGEKV-----MAADEIGVPGSHNVEN-ALATIAVAKLR-GVDNETIKETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q V + I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQFVDQ-INGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
+ + ++ G S I + G + ++ DA A +A GD ++LSP
Sbjct: 367 PDITGLKKMVILGQSAERIKRAADKAG--VAYVDATDIADATRKASELAEEGDVVLLSPA 424
Query: 379 CASFDEFRNFEHRGMVF 395
AS+D + NFE RG +F
Sbjct: 425 NASWDMYANFEVRGDLF 441
>gi|260913001|ref|ZP_05919486.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pasteurella
dagmatis ATCC 43325]
gi|260632991|gb|EEX51157.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pasteurella
dagmatis ATCC 43325]
Length = 434
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 120/394 (30%), Positives = 185/394 (46%), Gaps = 47/394 (11%)
Query: 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
+K + L +G +V+ +++ + S I+A+TG+NGKSTV T V +M G++
Sbjct: 78 IKTPEIQTALSAGVKVIGDIELFCR--EASKPIIAITGSNGKSTVTTLVYEMAKASGLKV 135
Query: 73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
+GGN+G P AL + + + V+E+SS+Q+E T + VLN+T DH
Sbjct: 136 GMGGNIGIP---------ALSLLEQNYDLYVLELSSFQLETTYS-LKATSATVLNVTEDH 185
Query: 133 LERHKTMKNYALTKCHLF----SHMVNTKLGLLPFGNQHLNEAIK-GHRFNLAWIGAFPG 187
++R+ +++Y K ++ + +VNT+ L + L A+ G + W
Sbjct: 186 MDRYIDLEDYRQAKLRIYHNAKTAIVNTEDPLTTIDS--LKSAVSFGEENSDYW------ 237
Query: 188 VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNS 247
+ TE F + L +K++GRHNY N V A L V +E + +
Sbjct: 238 --LKTENGKQYFMAKNEMI---LPCDEIKLVGRHNYMN--VLAAIALAQAANVSLEGIRT 290
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAKV 305
+ HR Q+ H GV W++DSKATN+ +T L L+ GH +LLGG K
Sbjct: 291 ALREFSGLDHRFQLAHF-ANGVYWINDSKATNVGSTVAALTGLQVAGH-LHLLLGGDGKE 348
Query: 306 LNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR 365
+ E LI+ H FG G + K LS M+ A+N R
Sbjct: 349 ADFSE---LSTLIQ--QPHIYCYCFGKDGAQLAK------LSQQSQLFDTMEQAINALRP 397
Query: 366 MATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
GD ++LSP CAS D+F +FE RG F LA
Sbjct: 398 NLKEGDMVLLSPACASLDQFTSFEQRGDEFTRLA 431
>gi|418744835|ref|ZP_13301180.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
santarosai str. CBC379]
gi|410794166|gb|EKR92076.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
santarosai str. CBC379]
Length = 462
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 117/389 (30%), Positives = 181/389 (46%), Gaps = 48/389 (12%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V SE+D KI+ VTGT+GKST + +L + GGNLG P +
Sbjct: 89 VFSEIDLGRFFFKG--KIIGVTGTDGKSTTTSLTAHLLRKDFSDLREGGNLGTPFTSFCK 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
I+L AV+E+SSYQ++ N VSV LNL PDHLERH TM+NY K
Sbjct: 147 KPISL---------AVLELSSYQLDDSNPLHL-DVSVFLNLAPDHLERHTTMENYFQAKL 196
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
+ + + N L+ ++E IK NLA T A A + + +
Sbjct: 197 KI-ADLQNENHFLI------VSEKIKERILNLASFRCKLLSFGRTSASDAFLDENSSKIG 249
Query: 208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLD-IGVDVEALNSTIEILRTPPHRMQIVHRDI 266
+ ++++ HN A S+L + IG E++ + I + + PHR QI
Sbjct: 250 TSKFVYDISGFHLPGTHNGENLAASILAAEAIGGKPESIQAQIPLFKGLPHRFQIAGEK- 308
Query: 267 QGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAKVLNGQESNGFEKLIEPLNHH- 324
QG+++++DSK+TNL + G+ K + ++LGG+ K QE L + LN
Sbjct: 309 QGISFINDSKSTNLHSMLAGMSTWKNLDRTCLILGGRPK----QEDP--RPLYDFLNRKI 362
Query: 325 RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAV----------------NHARRMAT 368
CV+ G + W+ + N + F+V ++ +A N R+
Sbjct: 363 GCVVLIGEARSF-WEEGIRNAIGEKLFSVESLNEAFEIFKKGNIVSEPSRPSNRKIRLTN 421
Query: 369 NGD--AIVLSPGCASFDEFRNFEHRGMVF 395
+ + ++V SP CASFD+++NFE RG F
Sbjct: 422 SAEITSVVFSPACASFDQYKNFEERGNHF 450
>gi|442804952|ref|YP_007373101.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Clostridium
stercorarium subsp. stercorarium DSM 8532]
gi|442740802|gb|AGC68491.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Clostridium
stercorarium subsp. stercorarium DSM 8532]
Length = 462
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 114/393 (29%), Positives = 184/393 (46%), Gaps = 47/393 (11%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L +G + SE++ +V P K AVTG++GK+T T + +ML G F+GGN+G P
Sbjct: 97 LANGAELTSEMEVFMEVCP--AKTYAVTGSDGKTTTTTLIYEMLKQEGYRCFLGGNIGTP 154
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
L I V+E+SS+Q M + N P V+V+ N+TP+HL+ HK+M+
Sbjct: 155 L-------IDRIEEIDGDDRVVLELSSFQLMTMKN---SPNVAVITNITPNHLDVHKSME 204
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--------GAF-PGVKID 191
Y K ++F + + +L + N I L GAF G +I
Sbjct: 205 EYIDAKKNIFRYQTESDRVVLNYDNAITRSFIPEVNGKLLLFSIKEECTSGAFLKGNRIF 264
Query: 192 TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
E+ L + +K+ G HN N A +V+ V E++ +
Sbjct: 265 YREDNTETEI--------LPIEEIKLPGMHNVENCLAAISAVMP---EVSRESIIHVAKT 313
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQES 311
HR++ V R + GV++ +DS ++ T L K + +++ GG K L+
Sbjct: 314 FSGVEHRIEFV-RTVNGVSFYNDSIGSSPTRTAATLKSFK-DRVILIAGGYDKKLS---- 367
Query: 312 NGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVN-----NGLSIPCFAVANMKDAVNHARR 365
+++L E ++ +C++ G + I N N +P V NM++AVN A
Sbjct: 368 --YDELAETIHAKVKCMVLMGDTADKIETAYRNFARKENIEPVPVIRVKNMEEAVNAAYG 425
Query: 366 MATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
+A +GD +VLSP ASFD + NF RG F+E+
Sbjct: 426 IARSGDIVVLSPASASFDMYANFMERGNHFKEI 458
>gi|363895019|ref|ZP_09322039.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Eubacteriaceae
bacterium ACC19a]
gi|361959776|gb|EHL13037.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Eubacteriaceae
bacterium ACC19a]
Length = 449
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 178/348 (51%), Gaps = 31/348 (8%)
Query: 59 TFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKY 117
+ +G + +V GN+GN A I+L +K F + E+SSYQ+E I N
Sbjct: 120 SMLGDIYKKYDENTYVVGNIGN----AVLSSISLAKTKANF---ITELSSYQLETIVN-- 170
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRF 177
F ++V+LN+TPDHL RHKTM+NY K ++ + + + +L ++ ++ ++ +
Sbjct: 171 FRVHIAVILNITPDHLSRHKTMENYKNAKYNITKNQIESDFLVLNKDDESIDINLENVKS 230
Query: 178 NLAWIGAFP----GVKIDTEAKT--ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
+ + GV D E + ++ ++ +H ++G+HN N +A +
Sbjct: 231 KVIYFSMKEKLKNGVYYDREKDSIISTINGKEEEIIKAEDIH---LLGKHNIQNT-LACV 286
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+V LD + + I+ + HR+Q V R++ GV +V+DSK TN+++T + +
Sbjct: 287 TVSILD-KIPTALIAEAIKDFKAVKHRLQKV-REVDGVIYVNDSKGTNIDSTLKAIESI- 343
Query: 292 GHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPC 350
+ +++ GG K+L F+ LI+ N + ++ FG + LI T +
Sbjct: 344 DNDIILIAGGYDKMLE------FDDLIKGFNGKVKTLLLFGATKKLIRDTALKYDYK-DI 396
Query: 351 FAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
++ N+K V A+ +A GD ++LSP CAS+D +++FE RG F EL
Sbjct: 397 ISLKNLKQCVQIAKIIAEKGDVVLLSPACASWDMYQSFEERGDEFIEL 444
>gi|359683875|ref|ZP_09253876.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
santarosai str. 2000030832]
gi|418755293|ref|ZP_13311500.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
santarosai str. MOR084]
gi|409964304|gb|EKO32194.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
santarosai str. MOR084]
Length = 462
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 117/389 (30%), Positives = 182/389 (46%), Gaps = 48/389 (12%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V SE+D KI+ VTGT+GKST + +L + GGNLG P +
Sbjct: 89 VFSEIDLGRFFFKG--KIIGVTGTDGKSTTTSLTAHLLRKDFSDLREGGNLGTPFTSFCK 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
I+L AV+E+SSYQ++ N VSV LNL PDHLERH TM+NY K
Sbjct: 147 KPISL---------AVLELSSYQLDDSNPLHL-DVSVFLNLAPDHLERHTTMENYFQAKL 196
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
+ + + N L+ ++E IK NLA T A A + + +
Sbjct: 197 KI-ADLQNENHFLI------VSEKIKERILNLASFRCKLLSFGRTSASDAFLDENSSKIG 249
Query: 208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLD-IGVDVEALNSTIEILRTPPHRMQIVHRDI 266
+ ++++ HN A S+L + IG E++ + I + + PHR QI +
Sbjct: 250 TSKFVYDISGFHLPGTHNGENLAASILAAEAIGGKPESIQAQIPLFKGLPHRFQIAG-EK 308
Query: 267 QGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAKVLNGQESNGFEKLIEPLNHH- 324
QG+++++DSK+TNL + G+ K + ++LGG+ K QE L + LN
Sbjct: 309 QGISFINDSKSTNLHSMLAGMSTWKNLDRTCLILGGRPK----QEDP--RPLYDFLNRKI 362
Query: 325 RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAV----------------NHARRMAT 368
CV+ G + W+ + N + F+V ++ +A N R+
Sbjct: 363 GCVVLIGEARSF-WEEGIRNAIGEKLFSVESLNEAFEIFKKGNIVSEPSRPSNRKIRLTN 421
Query: 369 NGD--AIVLSPGCASFDEFRNFEHRGMVF 395
+ + ++V SP CASFD+++NFE RG F
Sbjct: 422 SAEITSVVFSPACASFDQYKNFEERGNHF 450
>gi|78184101|ref|YP_376536.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
sp. CC9902]
gi|118595699|sp|Q3AZI5.1|MURD_SYNS9 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|78168395|gb|ABB25492.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
CC9902]
Length = 462
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 117/393 (29%), Positives = 182/393 (46%), Gaps = 36/393 (9%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L Q G ++ E++ A + + I + +TGTNGK+TV + +L H GI A +GGN
Sbjct: 86 LNGLRQEGVQIRGEIELAWEAL-NDIPWVGITGTNGKTTVTHLLSHVLGHAGIVAPMGGN 144
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI-PNKYFCPTVSVVLNLTPDHLERH 136
+G ++ A + KP + V+E+SSYQ+E PN P++ + LTPDHLERH
Sbjct: 145 MGVSAADMALKIRRGETPKPDW--LVMELSSYQIEAGPN--LAPSIGIWTTLTPDHLERH 200
Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLA---WIGAFPGVKIDTE 193
T++ Y K H + + L F + + HR +L W+ A P D
Sbjct: 201 GTLEAYRAIK-----HSLLQRSSLAIFNGDDAD--LSAHRPSLKRGMWVKAAPPCHDD-- 251
Query: 194 AKTASFEVPAVGVVSQLQLHNM---KVM---GRHNYHNAAVAALSVLGLDIGVDVEALNS 247
A F + G V + M KV+ G HN N + ++ IG++ E +
Sbjct: 252 -PPADFWIDDAGTVQAREGGAMFPAKVLAMPGAHNRQN--LLLVTAAAAQIGLNAEQIAQ 308
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLN 307
+E PHR++ + +DSKATN +A GL + G V+L GGQ K
Sbjct: 309 GLESFPGVPHRLENLG-STSSADVFNDSKATNYDAAAVGLQAMAG-PVVVLAGGQTK--- 363
Query: 308 GQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA 367
N L E + V+ FG + + + ++ AV A R
Sbjct: 364 --RGNATGWLAELKSKACAVVLFGAGAEELDALIRQSNYQGQVHRCTDLSAAVAIAVRAT 421
Query: 368 T--NGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
+ +++LSP CASFD++++FE RG F++L
Sbjct: 422 SELQASSLLLSPACASFDQYQDFEARGDHFRDL 454
>gi|407793137|ref|ZP_11140172.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Idiomarina
xiamenensis 10-D-4]
gi|407215497|gb|EKE85336.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Idiomarina
xiamenensis 10-D-4]
Length = 451
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 116/382 (30%), Positives = 182/382 (47%), Gaps = 46/382 (12%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++ +++ AQ R ++A+TG+NGKSTV VG++L G A VGGN+G P
Sbjct: 98 GITLVGDIELYAQASQR--PVIAITGSNGKSTVTQLVGELLAAAGKRAAVGGNIGTP--- 152
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
AL + V V+E+SS+Q+E P +V+LN++ DHL+R+ ++ +Y
Sbjct: 153 ------ALSLLDQQADVDVLELSSFQLE-STYSLRPDAAVILNISADHLDRYLSLADYIN 205
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT------EAKTAS 198
K +F N K ++ + H K A + +F G + D E + +S
Sbjct: 206 AKQRIFQ---NAKHIVINRDDSHTRPLQKTQ----ASVSSF-GQQADKHGFCLREEQGSS 257
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
+ +G L+ ++ + G HN N +AA L + +DV ++ + + PHR
Sbjct: 258 W--LCLGSEKLLRSDDIALQGVHNLMN--IAAALALVQALAIDVHSVLDAVRVFPGLPHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNL---EATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
Q++ + Q V WV+DSKATN+ EA GL L K V++ GG K + F
Sbjct: 314 CQLLKQQ-QQVAWVNDSKATNVGAAEAAIYGLRPLVAGKLVLIAGGDGKGAD------FT 366
Query: 316 KLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
+ L +IT G G I + L V ++ +AV A + ++L
Sbjct: 367 SFADALKQVDELITLGRDGPRIAE------LKAGSHQVQDLTEAVALAAELVGQQGTVLL 420
Query: 376 SPGCASFDEFRNFEHRGMVFQE 397
SP CASFD F F HRG VF +
Sbjct: 421 SPACASFDMFNGFAHRGEVFSD 442
>gi|421277045|ref|ZP_15727865.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
mitis SPAR10]
gi|395876326|gb|EJG87402.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
mitis SPAR10]
Length = 450
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 107/377 (28%), Positives = 183/377 (48%), Gaps = 31/377 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LEKGIPVLTEVELAYLI--SDAPIVGITGSNGKTTTTTMIGEVLTAAGQNGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + ++
Sbjct: 151 ASQVA-------QTATDKDTLVMELSSFQL-MGIQEFHPEIAVITNLMPTHIDYHGSFED 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ S+M +L F NQ L + + + N A + K+D E
Sbjct: 203 YVAAKWNIPSNMTAADYLVLNF-NQELAKEL-ATKTNAAVVPFSTLEKVDGAYLEDGLLY 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F V + + V G HN N A+A ++V L GVD E + T+ HR
Sbjct: 261 FRGEKV-----MAADEIGVPGSHNVEN-ALATIAVAKLR-GVDNETIKETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q V + I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQFVDQ-INGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
+ + ++ G S + + G++ ++ DA A +A GD ++LSP
Sbjct: 367 PDITGLKKMVILGQSAERVKRAADKAGVA--YVDATDIADATRKAYELAEEGDVVLLSPA 424
Query: 379 CASFDEFRNFEHRGMVF 395
AS+D + NFE RG +F
Sbjct: 425 NASWDMYANFEVRGDLF 441
>gi|424866318|ref|ZP_18290159.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospirillum sp.
Group II 'C75']
gi|124515890|gb|EAY57399.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospirillum
rubarum]
gi|387223115|gb|EIJ77487.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospirillum sp.
Group II 'C75']
Length = 487
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 116/393 (29%), Positives = 194/393 (49%), Gaps = 37/393 (9%)
Query: 26 KRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85
+ VM E+++A+ ++ ++AV GTNGKST + L G F+GGN G PLS+
Sbjct: 100 RNVMGEMEWASSWT--AVPLVAVGGTNGKSTTSALLAHFLEAAGERVFLGGNFGTPLSDM 157
Query: 86 AFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALT 145
S P VAVVE+SS+Q E F P V+++LN+TPDHL+R+ ++ +Y
Sbjct: 158 VLS--ERRGSSPLPTVAVVELSSFQAET-MGIFRPVVNLLLNITPDHLDRYLSVDHYRNA 214
Query: 146 KCHLFSHMVNTKLGLL---PFGNQHLNEAIKGHRFNLAWI----GAFP----GVKIDTEA 194
K + F M +L P + + R LAW G P G+ ++ +A
Sbjct: 215 KWNAFQTMEKESFTVLNRDPACGVYPPFSPISSR--LAWFYGSKGPCPDRTGGLILERDA 272
Query: 195 KTASFE-VPAVGVVS-QLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE-- 250
+A+ + + + +S L+ ++ MG AA+ + G E + + +E
Sbjct: 273 LSATLDGIEGLPPISWNLEKFPLEGMGNRQNLAAALLGAVLYLKATGKHPEQVTTVLEEA 332
Query: 251 --ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI--LLGGQAKVL 306
R PHRM++V + +G+ +++DSKATN++AT L GH + +LGG+ K
Sbjct: 333 AASFRGLPHRMEVVG-EWKGIRFINDSKATNVDATRLALEGYAGHSPFVHLILGGRDK-- 389
Query: 307 NGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR 365
+ L E + + + G + I + L G +P ++++AV+ A
Sbjct: 390 ----GAPYAPLREGIRTSVKSIAVLGEARDKIREEL---GSLVPLRMCESLEEAVDVAAG 442
Query: 366 MATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
A+ GD ++LSP C+S+D F +E RG VF+ +
Sbjct: 443 QASEGDRVLLSPACSSYDMFHGYEERGAVFRSI 475
>gi|402815853|ref|ZP_10865445.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Paenibacillus
alvei DSM 29]
gi|402506893|gb|EJW17416.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Paenibacillus
alvei DSM 29]
Length = 472
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 111/401 (27%), Positives = 196/401 (48%), Gaps = 39/401 (9%)
Query: 15 ATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74
A +A ++ G V++E++ A Q+ P I+ +TG+NGK+T T+VG ML G++ V
Sbjct: 86 APPVARAIELGIEVVTEVEVAYQLSP--APIIGITGSNGKTTTTTWVGNMLESAGMKPIV 143
Query: 75 GGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLE 134
GN+G PL +AA + VVE+SS+Q++ F P V+ +LN+ HL+
Sbjct: 144 AGNIGTPLCQAA-------QEASEDNTLVVELSSFQLK-GTSAFRPRVACLLNIAETHLD 195
Query: 135 RHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP----GVKI 190
H TM++Y +K LF++M + + +L ++ + + W+ + GV +
Sbjct: 196 YHGTMEDYVASKARLFANMGSGDIAVLNADDETCRTLSSHIQADQWWVSSMKRVERGVFV 255
Query: 191 DTEAKTASFE-----VPAVG---VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242
+ + + E V A G V + + + + GR N NA A + + +G +
Sbjct: 256 EPSYEVEAEEEERKIVYADGTGRVFPIISVMELGIPGRFNVDNALAAC--AISIAVGAEP 313
Query: 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ 302
AL ++ + HR++ V GV + ++SKATN +AT L + +++ GG
Sbjct: 314 SALVESLRSFQGVEHRLEFVSEQ-HGVKYYNNSKATNTKATLMALEAFE-RNIILIAGGL 371
Query: 303 AKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCF------AVAN 355
+ L+ F +L+ + + V+ G + ++ GL+ A
Sbjct: 372 DRGLD------FHELVPIMGERVKAVVAMGQTRHIMKNVAEKAGLTDIAVVDNVDHAADA 425
Query: 356 MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
+K+AV AR A GD ++LSP CAS+D F ++E RG +F+
Sbjct: 426 VKEAVEMARSYAKPGDIVLLSPACASWDMFPSYEDRGRMFK 466
>gi|294142806|ref|YP_003558784.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
violacea DSS12]
gi|293329275|dbj|BAJ04006.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
violacea DSS12]
Length = 451
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 111/371 (29%), Positives = 182/371 (49%), Gaps = 42/371 (11%)
Query: 34 FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALP 93
FA + RS ++ +TG+NGKSTV T VG+M G+ VGGN+G P+ L
Sbjct: 102 FARAIKDRSPCVIGITGSNGKSTVTTLVGEMAKAAGLNYAVGGNIGIPV---------LD 152
Query: 94 SSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHM 153
+ + ++E+SS+Q+E + C + + LN++ DH++R+ ++ Y K L+
Sbjct: 153 LLQKPVDLYILELSSFQLETTHSLNCISAT-CLNISEDHMDRYSDLEAYRQAKLALYDQ- 210
Query: 154 VNTKLGLLPFGNQ--HLNEAIKGHRFNL-AWIGAFPGVKIDTEAKTASFEVPAVGVVSQL 210
+K L + N+ + + F L + + GVK D + + E+ +
Sbjct: 211 --SKRALFNREDSLTQPNDPMNQNSFGLTSPVNDEWGVK-DGKIVHGTTEIAS------- 260
Query: 211 QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVT 270
L ++ ++G HN+ N +AA++ L G+D E + + HR ++V +I V
Sbjct: 261 -LQDVAIVGSHNHAN-LIAAMA-LAYHAGIDKEPMIQVAKNFTGLAHRCELV-ANIAAVA 316
Query: 271 WVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVI 328
+V+DSKATN+ AT L L H ++++GG K G + E + + H +I
Sbjct: 317 YVNDSKATNVGATVAALEGLGEHLGDIILIVGGDGK---GADFTPLETVFNKVAH---LI 370
Query: 329 TFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 388
T G G I L +M DAV A +AT GD ++LSP CAS D ++NF
Sbjct: 371 TLGKDGDKIA------ALKEHSHKADSMADAVKQAAELATAGDIVLLSPACASLDMYKNF 424
Query: 389 EHRGMVFQELA 399
RG F++LA
Sbjct: 425 MARGDDFRQLA 435
>gi|149377264|ref|ZP_01895011.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Marinobacter
algicola DG893]
gi|149358452|gb|EDM46927.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Marinobacter
algicola DG893]
Length = 446
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 109/362 (30%), Positives = 170/362 (46%), Gaps = 40/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGK+TV T VG+M G VGGN+G P AL + V+
Sbjct: 111 IIAITGSNGKTTVTTLVGEMARAAGRRVEVGGNIGTP---------ALDLLGRGADLYVL 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL---- 160
E+SS+Q+E + + VLN++ DH++R+ Y K +F+ N + L
Sbjct: 162 ELSSFQLET-TRELNALAATVLNVSDDHMDRYPDKMAYFQAKQRIFNGCQNAVVNLDDAL 220
Query: 161 -LPFGNQHLNEAIKG-HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
P +L G +R N + D E +F G + L + +M
Sbjct: 221 STPMARDNLRFLCFGFYRVNPDTF----STRDDDEGTWITF-----GFDNLLLAEELGLM 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G+HN N A + +DV + T++ + PHR + V R + V +++DSK T
Sbjct: 272 GQHNISNVMAALALGHAAGLPMDV--MLDTVKRFKGLPHRCEFVRR-VSDVDYINDSKGT 328
Query: 279 NLEATCTGLMDL--KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGV 335
N+ AT + L G K V++ GG+ K + F L EP+ H R V+ G
Sbjct: 329 NVGATTAAIESLVPTGGKIVLIAGGEGKGAD------FSLLAEPVAAHCRAVVLIGADAG 382
Query: 336 LIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
I L N + A++ AV+ A+++A GD ++LSP CASFD FR++ RG F
Sbjct: 383 TIATALGNR---VETVNAADIAGAVHTAKKLAQPGDRVLLSPACASFDMFRDYGDRGDRF 439
Query: 396 QE 397
++
Sbjct: 440 RQ 441
>gi|303233989|ref|ZP_07320638.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
magna BVS033A4]
gi|302494914|gb|EFL54671.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
magna BVS033A4]
Length = 441
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 111/372 (29%), Positives = 189/372 (50%), Gaps = 19/372 (5%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
V+S+L+ A Q I IKI+A+TGTNGK+T + + +MLN G +A GN+G +
Sbjct: 83 EVVSDLELA-QRIFGDIKIVAITGTNGKTTTTSLMTKMLNDSGRKAISIGNIGVGMLWEI 141
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
++ S K + V+E SS+Q+E K+F P S ++N+TPDH++ H +MKNY K
Sbjct: 142 YN-----SDKDTY--FVIECSSFQLE-STKHFKPQYSCIINITPDHIDWHGSMKNYVNAK 193
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
++ + +L +++ E K + N+ I ++ + K S
Sbjct: 194 KNVLKNQDENCYTVLNADDEYYEECKKFTKANIYDISTSKNIERGSFIKDNSIYFSDSYC 253
Query: 207 VSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI 266
+ L ++K++G HNY N L IG++ +++ T+ HR++ V RD+
Sbjct: 254 DKIIDLKDVKLIGYHNYQNVLFCV--TLAKLIGINDDSIRETLMSFSGVEHRLEFV-RDL 310
Query: 267 QGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRC 326
GV + +DSK TN++A+ + + +IL GG K ++ N F I + +
Sbjct: 311 SGVKYYNDSKGTNVDASVKAIESFDKN-VIILAGGYDKKVS--LDNFF---IAGKDKFKA 364
Query: 327 VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR 386
+I G + L + G + V +MK AV A ++A +GD ++LSP AS+ +
Sbjct: 365 LILMGQTRDLFEQKAKEYGFK-NIYLVDDMKQAVTQANKIAESGDVVLLSPASASWGMYN 423
Query: 387 NFEHRGMVFQEL 398
N+E RG F++L
Sbjct: 424 NYEERGNEFKDL 435
>gi|168482914|ref|ZP_02707866.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae CDC1873-00]
gi|418161724|ref|ZP_12798415.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17328]
gi|418175491|ref|ZP_12812089.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41437]
gi|418218425|ref|ZP_12845093.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae NP127]
gi|418238261|ref|ZP_12864817.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae NorthCarolina6A-23]
gi|419459536|ref|ZP_13999472.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA02270]
gi|419461816|ref|ZP_14001732.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA02714]
gi|172043724|gb|EDT51770.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae CDC1873-00]
gi|353831314|gb|EHE11443.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17328]
gi|353844051|gb|EHE24095.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41437]
gi|353876622|gb|EHE56471.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae NP127]
gi|353894684|gb|EHE74425.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae NorthCarolina6A-23]
gi|379534408|gb|EHY99620.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA02270]
gi|379534707|gb|EHY99917.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA02714]
Length = 450
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 109/374 (29%), Positives = 185/374 (49%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A +I ++ I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELA-YLISEAL-IIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGAFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G + ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAG--VAYVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|303228392|ref|ZP_07315225.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
atypica ACS-134-V-Col7a]
gi|401679996|ref|ZP_10811920.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
ACP1]
gi|302516894|gb|EFL58803.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
atypica ACS-134-V-Col7a]
gi|400219123|gb|EJO49994.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
ACP1]
Length = 454
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 125/375 (33%), Positives = 186/375 (49%), Gaps = 31/375 (8%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++ A V I L VTGTNGK+T T + Q++ G+ VGGN+G+ LSEAA+
Sbjct: 95 VVSEVELAYDVCKSPI--LGVTGTNGKTTTTTLLTQVMESTGLPVKVGGNIGDSLSEAAY 152
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
H P+ V E+SSYQ+E K FCP ++VLN+TPDHL RHKTM+NYA K
Sbjct: 153 HM-------PEGGYLVAELSSYQLETI-KSFCPLGAIVLNVTPDHLARHKTMENYAAAKA 204
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT----EAKT--ASFEV 201
+F + +L + + K + I K+D+ E T A +
Sbjct: 205 RIFMNQNPENFVVLNDDDPIVRAMKKDAHSKVLSISQHH--KVDSGAYFEGNTCYAVLDG 262
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
A V+ +H + G HN N + A+ L +GV+VE + IE HR++
Sbjct: 263 KATPVIDTEHIH---IKGSHNIEN--ILAVIALTYALGVEVEHIKHIIEQFHGVEHRLER 317
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V VT+ +DSKATN ++ L D ++L GG K+ ++ F +++
Sbjct: 318 V-TTFHDVTFYNDSKATNTDSVVKAL-DAFDKPVILLAGGHDKMTPLED---FMNIVKA- 371
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
H + VI G + V G+ +MK+AV ++A GD ++LSP C+S
Sbjct: 372 -HTKEVIFMGEAADRFESVAVKMGVQ-HIHRAQSMKEAVALGYQLAKAGDIVLLSPACSS 429
Query: 382 FDEFRNFEHRGMVFQ 396
FD + FE RG F+
Sbjct: 430 FDWYSCFEERGEDFK 444
>gi|62900456|sp|Q5FUJ7.2|MURD_GLUOX RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
Length = 448
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 173/379 (45%), Gaps = 46/379 (12%)
Query: 25 GKRVMSELDFAAQVIPRS---IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
G +++S+ + + + +S +AVTGTNGKST + + G GGNLG
Sbjct: 91 GIQILSDAEILYRAVRKSGSKAAFIAVTGTNGKSTTTALIAHLFTTAGRPCAAGGNLGT- 149
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ALP P V V+E+SSY +E +++ + +LNLTPDHL+RH M
Sbjct: 150 ------ASLALPL-LPDDGVYVIEMSSYMLERLDRFHA-NAACLLNLTPDHLDRHGDMAG 201
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
YA K H+F +M L ++ + W A I ++ + +V
Sbjct: 202 YAAAKAHVFDNMGPDDLAVIGMDDD--------------WCRA-----IASQVASRGVQV 242
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+ + + GRHN N V A + +G+D A+ + ++ HR+Q
Sbjct: 243 VELDADALPPYDGPALPGRHNAQN--VGAALTIASHLGLDEAAIRTGLKSFPGLEHRLQK 300
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V + GV++++DSKATN EA L K + + GG AK + G E L
Sbjct: 301 V-AECDGVSFINDSKATNAEAVSKALAAYD--KVMWIAGGVAK------AGGIESLAPFF 351
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA--TNGDAIVLSPGC 379
H G ++ TL +G +P ++ AV A + A N ++LSP C
Sbjct: 352 RHIAQAFLIGQDADVLAATLETHG--VPFQQCGTLEKAVPAAFKAALDENIPVVLLSPAC 409
Query: 380 ASFDEFRNFEHRGMVFQEL 398
ASFD+FR+FE RG F ++
Sbjct: 410 ASFDQFRSFEDRGSHFLQI 428
>gi|406884994|gb|EKD32299.1| hypothetical protein ACD_77C00134G0010 [uncultured bacterium]
Length = 444
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 104/389 (26%), Positives = 195/389 (50%), Gaps = 43/389 (11%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
+ SG V+SE++FA + + K + +TG+NGK+T + + +L + G+ + GN+G
Sbjct: 82 ITSSGIPVISEIEFAGRY--DNAKKICITGSNGKTTTTSIIYFLLKNAGLNVGLAGNIG- 138
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERH-KT 138
A + ++ V+E+SS+Q++ Y F ++V+LN+TPDHL+R+
Sbjct: 139 -------QSYAFQVATREYDYYVLELSSFQLD--GMYDFKADIAVLLNITPDHLDRYGNN 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQ----HLNEAIKGHRFNLAWIGAFPGVKIDTEA 194
M+NY K + +M + + ++ HLN+ + + P +I+
Sbjct: 190 MENYIKAKFRITRNMSSEDCFIFCADDEISISHLNKIVVQAK-------KLPFSQINEVE 242
Query: 195 KTASFEVPAVGVVS-----QLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
+ A + VV Q+ ++ + + G+HN +N+ AA++ G + + E L ++
Sbjct: 243 EGAFLRDEKMNVVYNNDSYQMFVNELSLQGKHNIYNSMAAAIT--GKILHIKDEVLRESL 300
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
+ HR++ + + ++ V +++DSKATN+ +T L +K + + GG+ K
Sbjct: 301 TSFKGVEHRLENILK-VKNVLYINDSKATNVNSTWYALESMK-TPVIWIAGGKDK----- 353
Query: 310 ESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMAT 368
N +E L E + R +I G + K G + + ++AV A ++A
Sbjct: 354 -GNDYEPLYELVKDKVRVLICLGVDNAKLHKEFA--GKVDEIYDAGSAQEAVETAYKVAK 410
Query: 369 NGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
+GD ++LSP CASFD F+N+E RG F+E
Sbjct: 411 SGDTVLLSPACASFDLFKNYEDRGKQFKE 439
>gi|418465291|ref|ZP_13036228.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Aggregatibacter actinomycetemcomitans RhAA1]
gi|359756223|gb|EHK90382.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Aggregatibacter actinomycetemcomitans RhAA1]
Length = 434
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 123/410 (30%), Positives = 190/410 (46%), Gaps = 54/410 (13%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA LQ+G V+ +++ + + + I +A+TG+NGKSTV
Sbjct: 61 WLLESDLIVISPGLAVKTPEIQTALQAGVEVVGDIELFCREVDKPI--VAITGSNGKSTV 118
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G+ +GGN+G P AL + + V+E+SS+Q+E Y
Sbjct: 119 TTLVAEMAKAAGLSVGMGGNIGIP---------ALSLLNQQHDLYVLELSSFQLE--TTY 167
Query: 118 FCPTV-SVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL-LPFGNQHLNEA 171
V + VLN+T DH+ R+ +++Y K ++++H ++N + L LP + +
Sbjct: 168 SLKAVAATVLNVTEDHMNRYVDLQDYRHAKLNIYNHCQTAVINVEDALTLPTTQRPQKQV 227
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
G W + TE V L MK+ GRHNY N A+A++
Sbjct: 228 SFGESNADYW--------LKTENNKTYLMAYDEAV---LACDEMKLTGRHNYMN-ALASI 275
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L G+++ + + + HR Q+ H GV W++DSKATN+ +T L L+
Sbjct: 276 A-LAQAAGINLTGIRTALREFGGLDHRFQVAHI-ADGVRWINDSKATNVGSTIAALTGLQ 333
Query: 292 -GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFGYSGVLIWKTLVNNGLSIP 349
K +LLGG K + F +L +N H FG G K L LS
Sbjct: 334 VAGKLHLLLGGDGKGAD------FSELARLINQPHIYCYCFGRDG----KQLA--ALSSQ 381
Query: 350 CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
M+ A+ R GD ++LSP CAS D+F FE RG F LA
Sbjct: 382 SQLFDTMEHAIAAIRPQLQAGDMVLLSPACASLDQFSCFEARGDEFTRLA 431
>gi|440722117|ref|ZP_20902500.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae BRIP34876]
gi|440725826|ref|ZP_20906088.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae BRIP34881]
gi|440361646|gb|ELP98863.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae BRIP34876]
gi|440367969|gb|ELQ05015.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae BRIP34881]
Length = 448
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 114/370 (30%), Positives = 181/370 (48%), Gaps = 55/370 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL + ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDEVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYNGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + + +
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKYLAFQFENL-----MPV 265
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
+KV G HN A A LG +G+ +A+ +++ HR Q + R+ GV +
Sbjct: 266 RELKVRGAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL-REHDGVHYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCV 327
+DSKATN+ A + D+ G K V++ GG K + F L P+ + R
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGAD------FSGLRAPVAKYCRAA 375
Query: 328 ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ G LI + L G ++P V ++ AV H+ ++A GDA++LSP CAS D F+N
Sbjct: 376 VLLGRDAELIAQAL---GDAVPLVRVDTVQAAVEHSAKLALRGDAVLLSPACASLDMFKN 432
Query: 388 FEHRGMVFQE 397
+E RG VF +
Sbjct: 433 YEERGRVFAQ 442
>gi|213966569|ref|ZP_03394720.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
syringae pv. tomato T1]
gi|301384716|ref|ZP_07233134.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. tomato Max13]
gi|302059796|ref|ZP_07251337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. tomato K40]
gi|302131743|ref|ZP_07257733.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. tomato NCPPB 1108]
gi|213928419|gb|EEB61963.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
syringae pv. tomato T1]
Length = 448
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 116/369 (31%), Positives = 177/369 (47%), Gaps = 53/369 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + VS+L
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKFLAFQFENLMPVSEL-- 268
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
KV G HN A A LG +G+ +A+ S++ HR Q + R+ GV +
Sbjct: 269 ---KVRGAHN--QANALAALALGHAVGLPFDAMLSSLREFTGLEHRCQWL-RERNGVGYY 322
Query: 273 DDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVI 328
+DSKATN+ A + L G K V++ GG K + F L P+ + R +
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIGGKLVLIAGGDGKGAD------FSGLRAPVAKYCRAAV 376
Query: 329 TFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 388
G LI + L G ++P V ++ A + +A GDA++LSP CAS D F+N+
Sbjct: 377 LLGRDAELIAQAL---GDAVPLIRVDTVQAAAERSAELAQRGDAVLLSPACASLDMFKNY 433
Query: 389 EHRGMVFQE 397
E RG VF +
Sbjct: 434 EERGRVFAQ 442
>gi|414157064|ref|ZP_11413364.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus sp.
F0442]
gi|410868380|gb|EKS16345.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus sp.
F0442]
Length = 449
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 186/378 (49%), Gaps = 33/378 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ G V++E++ A V I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LEKGIPVLTEVELAYLV--SDAPIIGITGSNGKTTTTTMIGEVLTAAGQGGLLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + + +V V+E+SS+Q+ + + F P ++V+ NL P H++ H + ++
Sbjct: 151 ASQVA-------QTATEKEVLVMELSSFQL-MGIEAFHPEIAVITNLMPTHIDYHGSFEH 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K +L +M + +L F NQ L + + K + + G + E
Sbjct: 203 YVAAKWNLQKNMTEKDVIVLNF-NQDLAKELATKTKARVLPFSTVEKVDGAYL--EDGLL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F+ V ++ + V G HN N A+A ++V + GV+ E + T+ H
Sbjct: 260 KFKGEVV-----MRADEIGVPGSHNVEN-ALATIAVAKVR-GVENEVIKETLSAFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R+Q V +IQGV + +DSK+TN AT L K +++ GG + N F+ L
Sbjct: 313 RLQYVD-EIQGVKFYNDSKSTNSLATQKALSGFDNSKVILIAGGLDR------GNEFDDL 365
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
+ + + ++ G S + + G +P A++ DA A +A+ GD ++LSP
Sbjct: 366 VPHIAGLKEMVILGESAPRVKRAADKAG--VPYVDAADVADATKKAFELASPGDVVLLSP 423
Query: 378 GCASFDEFRNFEHRGMVF 395
AS+D + NFE RG F
Sbjct: 424 ANASWDMYPNFEVRGDEF 441
>gi|392399186|ref|YP_006435787.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flexibacter
litoralis DSM 6794]
gi|390530264|gb|AFM05994.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flexibacter
litoralis DSM 6794]
Length = 471
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 111/388 (28%), Positives = 195/388 (50%), Gaps = 44/388 (11%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++FA++ + + KI+A+TGTNGK+T +L + G+ + GN+G + A
Sbjct: 104 VVSEIEFASRFV--TGKIIAITGTNGKTTTALLTYHLLKNAGLSVCLVGNIGKSFAREAI 161
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTK 146
+ ++ V+EVSS+Q++ ++ F P V+V+LN+TPDHL+R+ ++NY +K
Sbjct: 162 --------EDEYDYYVIEVSSFQLDDIDE-FRPHVAVLLNITPDHLDRYNYQIENYVNSK 212
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFE------ 200
+ + N + N+ E++K RF+ G + I + + S +
Sbjct: 213 FKINENQSNKDFFIY---NEEDIESLKYIRFH-RLAGRMLPINISKQKEYLSLQNKLRIS 268
Query: 201 -VPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL--SVLGLDIGVDVEALNSTIEILRTPPH 257
PA + + + ++ + G HN N A A + ++ L ++ L S + PH
Sbjct: 269 ATPAQML--DIPISDLPLQGAHNLLNIAAAGMIAQIIRLSDKQIIKGLKS----FKNAPH 322
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R++ + + I+G+T+++DSKATN++A L + ++GG K G E E
Sbjct: 323 RLEKI-KTIKGITFINDSKATNVDAVSYALESF-DRSLIWIVGGVDK---GNEYEIIEGS 377
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
++ + R ++ G + T G +MK A+ A +A N D ++LSP
Sbjct: 378 VKK--NVRVIVCLGKDNKKL--TTFFKGKVSEIRETNSMKKAIEIAFSLAENEDIVLLSP 433
Query: 378 GCASFDEFRNFEHRGMVF----QELAFS 401
CASFD F+N+E RG F QELA +
Sbjct: 434 ACASFDLFKNYEDRGDQFRRYVQELALN 461
>gi|374301716|ref|YP_005053355.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
africanus str. Walvis Bay]
gi|332554652|gb|EGJ51696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
africanus str. Walvis Bay]
Length = 435
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 110/377 (29%), Positives = 178/377 (47%), Gaps = 52/377 (13%)
Query: 26 KRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85
++V+SEL+ A+ + S ILAVTGTNGK+T V+ G +L G FVGGN+G PLSE
Sbjct: 98 RKVVSELELASWFV--SEPILAVTGTNGKTTTVSLCGHILRESGKRVFVGGNIGTPLSEY 155
Query: 86 AFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALT 145
+ + V+EVSS+Q++ + F P V V+LN + +HL+ H++M+ Y
Sbjct: 156 LL-------GGERADILVLEVSSFQLQ-NCRTFKPHVGVLLNFSANHLDYHESMEEYLEA 207
Query: 146 KCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVG 205
K LF+ L + P ++ + ++ F T+AK +
Sbjct: 208 KLKLFARQTEQDLAIAPL---NMKDELEARGF--------------TKAKRVYY------ 244
Query: 206 VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRD 265
V + +++G HN N A L+ GV + + + + HR++ V +
Sbjct: 245 -VPSNRFEGARLLGVHNKANMEAAWLACRAF--GVSDDQARAAVMSFKPLSHRIEPVI-E 300
Query: 266 IQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHR 325
GV +VDDSKAT ++A + + V LL G V G + L++ + +
Sbjct: 301 TGGVLFVDDSKATTIDAMAAAITAF--DRPVRLLAG--GVWKGGDVAALVPLLK--DRVK 354
Query: 326 CVITFGYSGVLI---WKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASF 382
V FG + + W+ +P F ++ AV A GD I+LSP ASF
Sbjct: 355 SVGLFGKAREVFEGAWQG------HVPLFWEPTLEPAVKRLYAEAQPGDVILLSPATASF 408
Query: 383 DEFRNFEHRGMVFQELA 399
D +++++ RG FQ +A
Sbjct: 409 DLYKDYKARGDDFQRIA 425
>gi|260591742|ref|ZP_05857200.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
veroralis F0319]
gi|260536026|gb|EEX18643.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
veroralis F0319]
Length = 443
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 102/386 (26%), Positives = 191/386 (49%), Gaps = 36/386 (9%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L+ G ++SE++FA + + K++ +TG+NGK+T + + + G + + GN+GN
Sbjct: 82 LMAKGTHIISEIEFAGRYT--NSKMICITGSNGKTTTTSLIYHIFKDAGYDVGLAGNIGN 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ ++E+SS+Q++ N Y F ++++LN+TPDHL+R+
Sbjct: 140 SL--------ALQVAEDPHAYYIIELSSFQLD--NMYNFRANIAILLNITPDHLDRYDFK 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+NYA K + + + + + + +K + + +P ++
Sbjct: 190 FENYADAKMRIIQNQTKDDSFIYWNDDPVIKKELKKYDVHAV---CYPFSELKEHGSIGY 246
Query: 199 FEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSVLGLDI-GVDVEALNSTIEILR 253
E + ++ ++ + GRHN +N+ A ++ +I G+ E++ ++
Sbjct: 247 IEEGQYKIEQPEPFNMEQEDLSLTGRHNIYNSLAAGIAS---NISGIKKESIRKSLSDFP 303
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
HR++ V + + GV +++DSKATN++A L ++ +++LGG+ K G + +
Sbjct: 304 GVEHRLEKVCK-VAGVQYINDSKATNVDACWYALESMRT-PTILILGGKDK---GNDYSA 358
Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVN-NGLSIPCFAVANMKDAVNHARRMATNGDA 372
+ L++ +C Y G K N + L IP +MKD V MA GD
Sbjct: 359 IKDLVK----EKCT-GLVYLGADNKKLHDNFDSLGIPVRDTHSMKDCVTACAEMAKPGDT 413
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQEL 398
++LSP CASFD F+N E RG F+ L
Sbjct: 414 VLLSPCCASFDLFKNMEDRGDQFKAL 439
>gi|375254185|ref|YP_005013352.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Tannerella
forsythia ATCC 43037]
gi|363407079|gb|AEW20765.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Tannerella
forsythia ATCC 43037]
Length = 445
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 108/391 (27%), Positives = 190/391 (48%), Gaps = 49/391 (12%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
++ G ++SE++FA + ++ + +TG+NGK+T +L G++ + GN+GN
Sbjct: 84 MERGIPIISEIEFAGRYTDATM--ICITGSNGKTTTTLLTYHILKEAGLDVGLAGNVGNS 141
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-TM 139
L AF P + V+E+SS+Q++ N Y F ++V+LN+TPDHL+R++ M
Sbjct: 142 L---AFQVAESPHA-----YYVIELSSFQLD--NMYEFKADIAVLLNITPDHLDRYQHCM 191
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
+NY K + + + + + + ++ HR K T + +F
Sbjct: 192 QNYIDAKFRILRNQTEKDAFIYWNDDPIIRKEMERHR-----------PKATTYPFSDTF 240
Query: 200 EVPAVGVVSQLQL-------------HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
G + + Q+ + + G HN +N A ++ LDI E +
Sbjct: 241 HPELKGYIKEKQMIIQTLNGTFTMDQEAIALRGTHNLYNTMAAGIAAKILDI--RDEKIR 298
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVL 306
+++ HR+++V R I+GV +++DSKATN+ + L + + V++LGG K
Sbjct: 299 ASLSGFPGVAHRLEMVAR-IRGVDYINDSKATNVNSCWYALQSIN-TRMVLILGGTDK-- 354
Query: 307 NGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRM 366
G + + E L+ L R +I G + +G +M++AVN A R+
Sbjct: 355 -GNDYSEIEALV--LRKVRALIFLGVDNRKLHAFF--DGKIARIEDAGSMEEAVNKAYRL 409
Query: 367 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
A GD ++LSP CASFD F N+E RG F++
Sbjct: 410 AEKGDTVLLSPCCASFDLFDNYEDRGDQFKK 440
>gi|58038641|ref|YP_190605.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Gluconobacter
oxydans 621H]
gi|58001055|gb|AAW59949.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gluconobacter
oxydans 621H]
Length = 476
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 173/379 (45%), Gaps = 46/379 (12%)
Query: 25 GKRVMSELDFAAQVIPRS---IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
G +++S+ + + + +S +AVTGTNGKST + + G GGNLG
Sbjct: 119 GIQILSDAEILYRAVRKSGSKAAFIAVTGTNGKSTTTALIAHLFTTAGRPCAAGGNLGT- 177
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ALP P V V+E+SSY +E +++ + +LNLTPDHL+RH M
Sbjct: 178 ------ASLALPL-LPDDGVYVIEMSSYMLERLDRFHA-NAACLLNLTPDHLDRHGDMAG 229
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
YA K H+F +M L ++ + W A I ++ + +V
Sbjct: 230 YAAAKAHVFDNMGPDDLAVIGMDDD--------------WCRA-----IASQVASRGVQV 270
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+ + + GRHN N V A + +G+D A+ + ++ HR+Q
Sbjct: 271 VELDADALPPYDGPALPGRHNAQN--VGAALTIASHLGLDEAAIRTGLKSFPGLEHRLQK 328
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V + GV++++DSKATN EA L K + + GG AK + G E L
Sbjct: 329 V-AECDGVSFINDSKATNAEAVSKALAAYD--KVMWIAGGVAK------AGGIESLAPFF 379
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA--TNGDAIVLSPGC 379
H G ++ TL +G +P ++ AV A + A N ++LSP C
Sbjct: 380 RHIAQAFLIGQDADVLAATLETHG--VPFQQCGTLEKAVPAAFKAALDENIPVVLLSPAC 437
Query: 380 ASFDEFRNFEHRGMVFQEL 398
ASFD+FR+FE RG F ++
Sbjct: 438 ASFDQFRSFEDRGSHFLQI 456
>gi|423294146|ref|ZP_17272273.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides ovatus
CL03T12C18]
gi|392676642|gb|EIY70073.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides ovatus
CL03T12C18]
Length = 444
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 109/390 (27%), Positives = 191/390 (48%), Gaps = 45/390 (11%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKAQGTPVISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEDYHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHL-NEAIKGHRFNLAWI---GAFPGVKI 190
M+NY K + + + P Q L +K H + A + GA V+
Sbjct: 190 MQNYIDAKFRITQNQTPDDAFIFWNDDPIIRQELAKHGLKAHLYPFAAVKEDGAIAYVE- 248
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTI 249
D E K + ++ + + G+HN +N+ A +S L G+ E + +
Sbjct: 249 DHEVKITE------PIAFNMEQEELALTGQHNLYNSLAAGISANLA---GIAKENIRKAL 299
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
+ HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K
Sbjct: 300 SDFKGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK----- 352
Query: 310 ESNGFEKLIEPLNHHRC--VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA 367
N + + IE L +C ++ G + + GL + MKDAV A ++A
Sbjct: 353 -GNDYTE-IEDLVREKCSALVYLGLHNEKLHEFFDRFGLPVADVQTG-MKDAVEAAYKLA 409
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
G+ ++LSP CASFD F+++E RG F+E
Sbjct: 410 KKGETVLLSPCCASFDLFKSYEDRGDQFKE 439
>gi|336451749|ref|ZP_08622186.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Idiomarina sp.
A28L]
gi|336281562|gb|EGN74842.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Idiomarina sp.
A28L]
Length = 451
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 109/381 (28%), Positives = 185/381 (48%), Gaps = 36/381 (9%)
Query: 23 QSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+G ++S+++ FA +V + ++ VTG+NGKSTVV +L GI A GN+G P
Sbjct: 92 DAGVEMISDIELFAWEV---EVPVVGVTGSNGKSTVVELTTHILRQCGINAVAAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ ++ LP +K K V+E+SS+Q+E+ N T + +LN++ DHL+R+ +
Sbjct: 149 VLDSL-----LPGAK-KADCYVLELSSFQLELVNSLQL-TAATILNISSDHLDRYDDERG 201
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ H TKL + + + L G+ K D T E+
Sbjct: 202 YERAKHRIYQH---TKLCVWNRDDTKTKPLFRRQGMQLISFGSTDAAK-DFGITTVKDEL 257
Query: 202 PAVGVVSQ--LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
A+ ++ ++ + + G HN N VA L +GV++ + + ++ PHR
Sbjct: 258 -ALTYANKPFIKESELPIQGTHNLLNVQVAV--ALAQALGVNLAEAVAGLAGYKSLPHRC 314
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGGQAKVLNGQESNGFEK 316
++V + + V W+DDSKATN AT + ++ K +++ GG AK +
Sbjct: 315 ELVG-EFEKVRWIDDSKATNPGATIAAIEGIRASAKGKLILIAGGDAKGAD------LSV 367
Query: 317 LIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLS 376
L + L +IT G G I + + V ++ +AV +A + AT ++LS
Sbjct: 368 LKDSLAQVDILITLGRDGDKIAEQKTRS------RKVHSLNEAVAYAAKEATENSVVLLS 421
Query: 377 PGCASFDEFRNFEHRGMVFQE 397
P CAS D F+N+ RG F+E
Sbjct: 422 PACASLDMFKNYAERGQKFRE 442
>gi|220933947|ref|YP_002512846.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalivibrio
sulfidophilus HL-EbGr7]
gi|219995257|gb|ACL71859.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalivibrio
sulfidophilus HL-EbGr7]
Length = 442
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 116/357 (32%), Positives = 178/357 (49%), Gaps = 37/357 (10%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV VG+M G+ VGGN G P A + + ++ V+
Sbjct: 108 VVAITGSNGKSTVTALVGEMARAAGLNVAVGGNFGIP----ALDLL----NDADVELYVL 159
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E + P + VLN++ DHL+R++++++YA K +F T+ ++
Sbjct: 160 ELSSFQLET-TESLAPVAATVLNISADHLDRYESLEDYAAAKERIFRR---TETAVINRD 215
Query: 165 NQHLNEAIKGHR-----FNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMG 219
+ + G R ++ G + V+ D E A E+P +++ G
Sbjct: 216 DPRVWSMAGGARRVSFGLDVPGEGDWGLVERDAEPWLAQGEIP------WFAESRLRIAG 269
Query: 220 RHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATN 279
RHN NA A G+ EA+ + PHR Q V R + GV+W +DSK TN
Sbjct: 270 RHNTANALAALALGQ--AAGLPGEAMVEALTQFSGLPHRCQWVTR-LHGVSWYNDSKGTN 326
Query: 280 LEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL-NHHRCVITFGYSGVLIW 338
L AT L G + V++ GGQ K GQ+ F L + + R V+ G I
Sbjct: 327 LGATLAALEGFPG-QVVLIAGGQGK---GQD---FAPLGDAVVGKARAVVLLGEDAPHIA 379
Query: 339 KTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
L +P +VA+M+ AV A R+A +GD+++LSP CAS D F N+ HRG VF
Sbjct: 380 TALDGR---VPVVSVASMEAAVAEAARLAQSGDSVLLSPACASLDMFDNYMHRGEVF 433
>gi|87301212|ref|ZP_01084053.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
sp. WH 5701]
gi|87284180|gb|EAQ76133.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
sp. WH 5701]
Length = 463
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 119/395 (30%), Positives = 179/395 (45%), Gaps = 40/395 (10%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L + G RV E+ A + I + +TGTNGK+TV + +LNH G++A + GN
Sbjct: 91 LKALRERGVRVCGEMSVAWEA-SNEIPWIGITGTNGKTTVTHLLSHILNHAGLDAPMVGN 149
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G +E ++ P + VVE+SSYQ+E + P + + LTPDHLERH
Sbjct: 150 VGISAAELLIERREAGATPPDW--LVVELSSYQIE-SSAELAPRLGLWTTLTPDHLERHG 206
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKID 191
T++ Y K L + G Q LN A G W+ A G +
Sbjct: 207 TLEAYRAIKRSLLQNC----------GEQLLNADDADLRAHAGSWDRATWVTA--GTRRL 254
Query: 192 TEAKTASFEVPAVGVVSQ-----LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
A F G+V + + G HN N +AA + L L G++ +
Sbjct: 255 LGAGLQPFLWIDGGMVMAASGPLFSAAALALPGAHNRQNMVLAAATALKL--GLEPAVIE 312
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVL 306
+ + PHR++ + R + GV W +DSKATN +A G+ + G V+L GG+ K
Sbjct: 313 AALRSFPGVPHRLEQI-RLLDGVRWFNDSKATNYDAAEVGITAVDG-PMVVLAGGEIK-- 368
Query: 307 NGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR 365
E +E L V+ FG + L +G + V +AV AR
Sbjct: 369 ----QGDPEAWLEALGRQAAAVVLFGAAREAFAALLSGSGYAGTVELVEGQAEAVPLARE 424
Query: 366 MATN--GDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
+A ++LSP CASFD++++FE RG F+ L
Sbjct: 425 LARRLGCPTVLLSPACASFDQYKDFEARGEHFRTL 459
>gi|418148133|ref|ZP_12784898.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13856]
gi|353812808|gb|EHD93041.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13856]
Length = 450
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 184/374 (49%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDK---NTLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|417915776|ref|ZP_12559375.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
mitis bv. 2 str. SK95]
gi|342832068|gb|EGU66369.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
mitis bv. 2 str. SK95]
Length = 450
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 106/374 (28%), Positives = 184/374 (49%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKELASK--TQATVVPFSTLEKVDGAYLADGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAASEIGVPGGHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V +I+GV + +DSK+TN+ AT L K +++ GG + N F++L+ +
Sbjct: 317 VD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAAEKAGVA--YVDATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|30316124|sp|Q9F1N2.1|MURD_SHEVD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|11761333|dbj|BAB19200.1| MurD [Shewanella violacea]
Length = 449
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 111/371 (29%), Positives = 182/371 (49%), Gaps = 42/371 (11%)
Query: 34 FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALP 93
FA + RS ++ +TG+NGKSTV T VG+M G+ VGGN+G P+ L
Sbjct: 100 FARAIKDRSPCVIGITGSNGKSTVTTLVGEMAKAAGLNYAVGGNIGIPV---------LD 150
Query: 94 SSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHM 153
+ + ++E+SS+Q+E + C + + LN++ DH++R+ ++ Y K L+
Sbjct: 151 LLQKPVDLYILELSSFQLETTHSLNCISAT-CLNISEDHMDRYSDLEAYRQAKLALYDQ- 208
Query: 154 VNTKLGLLPFGNQ--HLNEAIKGHRFNL-AWIGAFPGVKIDTEAKTASFEVPAVGVVSQL 210
+K L + N+ + + F L + + GVK D + + E+ +
Sbjct: 209 --SKRALFNREDSLTQPNDPMNQNSFGLTSPVNDEWGVK-DGKIVHGTTEIAS------- 258
Query: 211 QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVT 270
L ++ ++G HN+ N +AA++ L G+D E + + HR ++V +I V
Sbjct: 259 -LQDVAIVGSHNHAN-LIAAMA-LAYHAGIDKEPMIQVAKNFTGLAHRCELV-ANIAAVA 314
Query: 271 WVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVI 328
+V+DSKATN+ AT L L H ++++GG K G + E + + H +I
Sbjct: 315 YVNDSKATNVGATVAALEGLGEHLGDIILIVGGDGK---GADFTPLETVFNKVAH---LI 368
Query: 329 TFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 388
T G G I L +M DAV A +AT GD ++LSP CAS D ++NF
Sbjct: 369 TLGKDGDKIA------ALKEHSHKADSMADAVKQAAELATAGDIVLLSPACASLDMYKNF 422
Query: 389 EHRGMVFQELA 399
RG F++LA
Sbjct: 423 MARGDDFRQLA 433
>gi|307706272|ref|ZP_07643086.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
mitis SK321]
gi|307618363|gb|EFN97516.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
mitis SK321]
Length = 450
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 105/374 (28%), Positives = 184/374 (49%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LSKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVA-------QTATDKDTLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M T +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTATDFLVLNF-NQDLAKELATK--TQATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V +I+GV + +DSK+TN+ AT L K +++ GG + N F++L+ +
Sbjct: 317 VD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVDATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|401684020|ref|ZP_10815903.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
sp. BS35b]
gi|418974839|ref|ZP_13522748.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
oralis SK1074]
gi|383348210|gb|EID26169.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
oralis SK1074]
gi|400186325|gb|EJO20537.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
sp. BS35b]
Length = 450
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 184/374 (49%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASKVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEA 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F + A A ++
Sbjct: 203 YVAAKWNIQNKMTAVDFLVLNF-NQDLAKELATK--TQATVVPFSTKEKVDGAYLADGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAASEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V +I+GV + +DSK+TN+ AT L K +++ GG + N F++L+ +
Sbjct: 317 VD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + N G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADNAGVA--YVDATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|456875047|gb|EMF90281.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
santarosai str. ST188]
Length = 462
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 117/389 (30%), Positives = 181/389 (46%), Gaps = 48/389 (12%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V SE+D KI+ VTGT+GKST + +L + GGNLG P +
Sbjct: 89 VFSEIDLGRFFFKG--KIIGVTGTDGKSTTTSLTAHLLRKDFSDLREGGNLGTPFTSFCK 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
I+L AV+E+SSYQ++ N VSV LNL PDHLERH TM+NY K
Sbjct: 147 KPISL---------AVLELSSYQLDDSNPLHL-DVSVFLNLAPDHLERHTTMENYFQAKL 196
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
+ + + N L+ ++E IK NLA T A A + + +
Sbjct: 197 KI-ADLQNENHFLI------VSEKIKESILNLASFRCKLLSFGRTSASDAFLDENSSKIG 249
Query: 208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLD-IGVDVEALNSTIEILRTPPHRMQIVHRDI 266
+ ++++ HN A S+L + IG E++ + I + + PHR QI
Sbjct: 250 TSKFVYDISGFHLPGTHNGENLAASILAAEAIGGKPESIQAQIPLFKGLPHRFQIAGEK- 308
Query: 267 QGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAKVLNGQESNGFEKLIEPLNHH- 324
QG+++++DSK+TNL + G+ K + ++LGG+ K QE L + LN
Sbjct: 309 QGISFINDSKSTNLHSMLAGMSTWKNLDRTCLILGGRPK----QEDP--RPLYDFLNRKI 362
Query: 325 RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAV----------------NHARRMAT 368
CV+ G + W+ + N + F+V ++ +A N R+
Sbjct: 363 GCVVLIGEARSF-WEEGIRNAIGEKLFSVESLNEAFEIFKKGNIVSETSRPSNRKIRLTN 421
Query: 369 NGD--AIVLSPGCASFDEFRNFEHRGMVF 395
+ + ++V SP CASFD+++NFE RG F
Sbjct: 422 SAEITSVVFSPACASFDQYKNFEERGNHF 450
>gi|335040563|ref|ZP_08533689.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caldalkalibacillus
thermarum TA2.A1]
gi|334179533|gb|EGL82172.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caldalkalibacillus
thermarum TA2.A1]
Length = 450
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 101/355 (28%), Positives = 169/355 (47%), Gaps = 20/355 (5%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+ +TG+NGK+T T + +ML + GN+G E A ++P Q V
Sbjct: 108 IIGITGSNGKTTTTTLIYEMLKDSDPPPLIAGNIGTVFCEVA------ARARPG-QWLVT 160
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q++ F P + V+LN+ HL+ H T + Y K LF++ L +
Sbjct: 161 ELSSFQLQ-GTTAFHPKIGVLLNIFDAHLDYHGTKQAYIEAKAKLFANQTPDDLAVFNLD 219
Query: 165 NQHLNEAIKGHRFNLAWIG--AFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ + + W + P E + V L + +++ G HN
Sbjct: 220 QEETRRVADAVKAQVVWFSTRSHPERGAYVEDGRIKYRNKLGEVTDVLAANEVRLPGTHN 279
Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
N VAA++V L+ G +E + + PHR+Q V R+++GV + +DSKATN A
Sbjct: 280 LENV-VAAVAV-SLEAGAKLERVREVLRNFTGVPHRLQFV-RELRGVRYYNDSKATNALA 336
Query: 283 TCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLV 342
T L G + V++ GG + G + G + + + + +I +G + +
Sbjct: 337 TKKALESFSG-RVVLIAGGLDR---GDDYRGLTTVFK--SRVKALIVYGQVAGKLAEIGY 390
Query: 343 NNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
G+ F V N+K+AVN A ++A GD ++LSP AS+D+F +FE RG +F +
Sbjct: 391 KAGVK-HVFHVDNVKEAVNVAHQIAEQGDTVLLSPAAASWDQFSSFEERGDMFTD 444
>gi|268318243|ref|YP_003291962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodothermus
marinus DSM 4252]
gi|262335777|gb|ACY49574.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodothermus
marinus DSM 4252]
Length = 455
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 196/406 (48%), Gaps = 57/406 (14%)
Query: 19 ACLLQSGKR----VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74
A L+Q +R V SE++ A+ I+AVTGTNGK+T + +G + G V
Sbjct: 82 APLVQQARRIGLPVYSEIEVASWFC--RAPIVAVTGTNGKTTTTSLIGYIFRRAGRRTIV 139
Query: 75 GGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLE 134
GN+G P S+ + P V V+EVSS+Q++ F P VSV+LN+TPDHL+
Sbjct: 140 AGNIGYPFSDYVL------DTTPD-DVVVLEVSSFQLD-HVATFRPRVSVLLNITPDHLD 191
Query: 135 RHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAI-KGHRFNLAWIGAFPGVKIDT 192
R+ YA +K +F++ + + ++ + A + HR + F
Sbjct: 192 RYNYNFNEYAQSKFRIFANQRGEDVLVYNHDDELIRMAAERAHRKRGLRVLGF------- 244
Query: 193 EAKTASFEVPAVGVVSQ--------------LQLHNMKVMGRHNYHNAAVAALSVLGLDI 238
+ E+PA V + + + + GRHN +N+ AA++ +++
Sbjct: 245 ---SQRTELPAGAFVRDGYLILRIEQQEEVLMHANELALRGRHNLYNSLAAAVAARVMEV 301
Query: 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL 298
DV + ++ PHR++ V R++ GV +V+DSKATN+ A L+ C I+
Sbjct: 302 RNDV--VRESLASFEGVPHRLEFV-RELDGVRYVNDSKATNVNAVWYA---LESFSCPIV 355
Query: 299 LGGQAKVLNGQESNGFEKLIEPLNHH--RCVITFGYSGVLIWKTLVNNGLSIP-CFAVAN 355
L + G++ +++PL R ++ G S + + L G +P +
Sbjct: 356 L-----IAGGRDKGNDYSVLKPLVKEKVRALVAIGESADKLLREL---GPLVPHAVKAQS 407
Query: 356 MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 401
M++A+ +AR A GD ++LSP CASFD F N+E RG F+ L S
Sbjct: 408 MEEAIQYARVFAEPGDVVLLSPACASFDMFENYEDRGDTFRRLVMS 453
>gi|226226832|ref|YP_002760938.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gemmatimonas
aurantiaca T-27]
gi|226090023|dbj|BAH38468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gemmatimonas
aurantiaca T-27]
Length = 464
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 119/392 (30%), Positives = 192/392 (48%), Gaps = 40/392 (10%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
++G V+ E++ A ++ P +++ +AVTGTNGK+T +G +L LG++A GN+G P+
Sbjct: 94 EAGVPVVGEVEIALRLQP-ALRYIAVTGTNGKTTTTALIGHLLRALGVDAADVGNIGTPV 152
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQM-EIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S +AL + P + A +E+SS+Q+ + P Y P V V+ L+PDHL+R+ ++
Sbjct: 153 S-----ALALQETPPAW--AALEMSSFQLHDTPGIY--PDVGVLTTLSPDHLDRYTSVAE 203
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K LF + V+ + + + E ++G W +D S +
Sbjct: 204 YYGDKQRLFLNAVSQSRWVATADSDAVRELVQGIEGQWYWFSTKQTDGMDASYHHESGML 263
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD----IGVDVEALNSTIEILRTPPH 257
+G + + + G HN N A LSV+ D G AL + R PPH
Sbjct: 264 HVLG-APLMARDRVPLAGDHNVANVLAAVLSVMVADASFRTGTARAALADAVATFRAPPH 322
Query: 258 RMQ-IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK 316
R++ +VHR V W++DSKATN+ +T L + V+LLGG+ K +
Sbjct: 323 RLETVVHR--HDVVWINDSKATNVASTLVALAGMT-RPTVVLLGGRHK------GEPYTA 373
Query: 317 LIEPLNH-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVA--------NMKDAVNHARRMA 367
L+ L + VI +G + T+V + L+ P V + + A A
Sbjct: 374 LLPELRRIAKVVIAYGEAA----DTIVAD-LTAPLAGVVPVVQVHERSFAAVMTRAHAEA 428
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
+ GDA++LSP C+S+D F N+E RG F LA
Sbjct: 429 SAGDAVLLSPACSSYDMFNNYEERGREFARLA 460
>gi|417698122|ref|ZP_12347295.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41317]
gi|419452867|ref|ZP_13992841.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae EU-NP03]
gi|419505641|ref|ZP_14045302.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA49194]
gi|332202563|gb|EGJ16632.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41317]
gi|379607555|gb|EHZ72301.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA49194]
gi|379627451|gb|EHZ92063.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae EU-NP03]
Length = 450
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 109/374 (29%), Positives = 185/374 (49%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A +I ++ I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LVKGIPVLTEVELA-YLISEAL-IIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGAFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G + ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAG--VAYVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|398847758|ref|ZP_10604646.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM84]
gi|398251261|gb|EJN36530.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM84]
Length = 448
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 121/370 (32%), Positives = 177/370 (47%), Gaps = 51/370 (13%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IIAISGSNAKSTVTTLVGEMAAKAGKRVAVGGNLGTP---------ALDLLADDIELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 ---LPF-GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
LP G + F AF ++D E K +FE + + +K
Sbjct: 221 SRPLPVEGRPCWTFGLNAPDFK-----AFGLREVDGE-KHLAFEFQTL-----MPARELK 269
Query: 217 VMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDD 274
+ G HN N AA+A GL +EAL ++ HR Q V R+ GV W DD
Sbjct: 270 IRGAHNQSNALAALALGHAAGLPFAPMLEALREFAGLV----HRCQWV-RERNGVNWYDD 324
Query: 275 SKATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVIT 329
SKATN+ A + D++G K V++ GG K + F L EP+ R V+
Sbjct: 325 SKATNVGAALAAIEGLGADIEG-KLVLIAGGDGKGAD------FAALREPVARFCRAVVL 377
Query: 330 FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 389
G + + L G +P V + +AV +A GDA++LSP CAS D F+NFE
Sbjct: 378 LGRDAERLAEAL---GDGVPQVRVKTLDEAVQQCAELAQPGDAVLLSPACASLDMFKNFE 434
Query: 390 HRGMVFQELA 399
RG +F + A
Sbjct: 435 ERGRLFAQAA 444
>gi|424807602|ref|ZP_18233010.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
SX-4]
gi|342325544|gb|EGU21324.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
SX-4]
Length = 408
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 120/427 (28%), Positives = 191/427 (44%), Gaps = 80/427 (18%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + + ++A+TG+NG
Sbjct: 29 WNLEWLLSADLVVTNPGIALATPEIQQVLATGIPVVGDIELFAWHVDK--PVIAITGSNG 86
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++ VGGN+G P AL P+ ++ V+E+SS+Q+E
Sbjct: 87 KSTVTDLSGVLANAAGVKTAVGGNIGVP---------ALDLISPEVELYVLELSSFQLET 137
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIK 173
+ + LNL+ DH++R++ M++Y K +F H +
Sbjct: 138 TSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVV--------------- 181
Query: 174 GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHN--------------MKVMG 219
N + FP + T E PA V++ Q H + ++G
Sbjct: 182 ----NADDVQTFPDHAAHLQVVTFGVEQPAQFSVAEHQGHEYLFARDNAVLASSELSLVG 237
Query: 220 RHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
RHN N +A L G+++ + ++AL S + HR Q+V D G+ WV+DSKA
Sbjct: 238 RHNVANVLTVLALLDSAGVNVRLALDALKSYTGLT----HRCQVV-ADNHGIKWVNDSKA 292
Query: 278 TNLEATCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVL 336
TN+ +T L LK + +L+GG K G + + L C FG G
Sbjct: 293 TNVASTLAALSGLKVEGQLYLLVGGVGK---GADFTPLAPVFATLPLQLCC--FGVDGDK 347
Query: 337 IWKTLVNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 392
+P A D+ V R +GD ++LSP CASFD+F+NF RG
Sbjct: 348 F----------MPLHPSARFYDSMESIVRSIRPELKSGDMVLLSPACASFDQFKNFMARG 397
Query: 393 MVFQELA 399
+F +LA
Sbjct: 398 DIFAQLA 404
>gi|410096278|ref|ZP_11291266.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides
goldsteinii CL02T12C30]
gi|409226615|gb|EKN19522.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides
goldsteinii CL02T12C30]
Length = 444
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 110/390 (28%), Positives = 192/390 (49%), Gaps = 33/390 (8%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L G ++SE++FA + K++ +TG+NGK+T +L G++
Sbjct: 75 KAPIIQKLKAQGTHIISEIEFAGRYTDS--KMICITGSNGKTTTTMLTYHILKEAGLDVG 132
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+GN L AL ++ V V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 133 LAGNVGNSL--------ALQVAEEPHAVYVIELSSFQLD--NMYDFKADIAILLNITPDH 182
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF-----P 186
L+R+ M+NY K + + + + + + I R A + F
Sbjct: 183 LDRYNYEMQNYVDAKFRIIQNQTSEDAFIFWNDDPIIAREI-AKRHPAATLYPFAETHED 241
Query: 187 GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
GVK T+ K E L + + G HN +N+ + ++ +DI E +
Sbjct: 242 GVKGYTDNKQIVIETSNGTFTMDQDL--LALTGTHNLYNSLASGIASKVVDIHD--ENIR 297
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVL 306
+++ HR++ V R ++GV +++DSKATN+ + L + K V++LGG K
Sbjct: 298 ASLSDFTGVEHRLEKVAR-VRGVDYINDSKATNVNSCWYALQSMTT-KLVLILGGTDK-- 353
Query: 307 NGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRM 366
G + + E+L++ R +I G + +G +M++AVN A ++
Sbjct: 354 -GNDYSEIEELVK--QKVRALIFLGVDNAKLHAFF--DGKVAQIEDARSMEEAVNKAYKL 408
Query: 367 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
A GD ++LSP CASFD F+++E RG F+
Sbjct: 409 AEKGDTVLLSPCCASFDLFKSYEDRGDQFK 438
>gi|385260126|ref|ZP_10038275.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
sp. SK140]
gi|385192046|gb|EIF39456.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
sp. SK140]
Length = 450
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 108/377 (28%), Positives = 181/377 (48%), Gaps = 31/377 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ G V++E++ A V I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LEKGIPVLTEVELAYLV--SEAPIVGITGSNGKTTTTTMIGEVLTAAGQNGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVA-------QTATDKDTLVMELSSFQL-MGIQEFHPEIAVITNLMPTHIDYHGSFEA 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ S+M +L F NQ L + + + N + K+D E
Sbjct: 203 YVEAKWNIQSNMTAADYLVLNF-NQELAKEL-ATKTNATVVPFSTLEKVDGAYLEDGLLY 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F V + + V G HN N A+A ++V L GVD E + T+ HR
Sbjct: 261 FRGEKV-----MAADEIGVPGSHNVEN-ALATIAVAKLR-GVDNETIKETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q V + I+GV + +DSK+TN+ AT L K +++ GG + N FE+L+
Sbjct: 314 LQFVDQ-IKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFEELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
+ + ++ G S + + G + ++ DA A +A GD ++LSP
Sbjct: 367 PDITGLKKMVILGQSAERVKRAADKAG--VAYVDATDIADATRKAYELAEEGDVVLLSPA 424
Query: 379 CASFDEFRNFEHRGMVF 395
AS+D + NFE RG +F
Sbjct: 425 NASWDMYANFEVRGDLF 441
>gi|429754109|ref|ZP_19286854.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. oral taxon 326 str. F0382]
gi|429170328|gb|EKY12016.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. oral taxon 326 str. F0382]
Length = 447
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 105/390 (26%), Positives = 195/390 (50%), Gaps = 48/390 (12%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G R++SE++FA++ S+ I+ +TG+NGK+T + G++ +GGN+G
Sbjct: 84 EKGIRIISEIEFASEYT-HSL-IVGITGSNGKTTTTLLTHHIFKEAGLQVGLGGNIGYSF 141
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKN 141
+E + + P + V +E+SS+Q++ ++F P ++++LN+TPDHL+R+ +N
Sbjct: 142 AEL------VATENPPYYV--LEISSFQLD-GIEHFAPHIAILLNITPDHLDRYDYKFEN 192
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI----------GAF---PGV 188
Y +K + + + + + E ++ H I GAF +
Sbjct: 193 YIASKFRIAMNQTENDYLIYDADDPVIEEWLQHHTLKAKLIPFSIEKELPYGAFLKDNKI 252
Query: 189 KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
I E +TA +++ + + + G+HN N A SV + + +L +
Sbjct: 253 HIMLENQTAE--------TTEIDVEEISLRGKHNIKNTMAA--SVAARLVNIRNNSLRDS 302
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG 308
++ + HR++ V + + GVT+V+DSKATN+ + L +K V ++GGQ K
Sbjct: 303 LKGFKGADHRLEEV-KVVDGVTYVNDSKATNVNSVYFALDTIKT-PIVWIVGGQDK---- 356
Query: 309 QESNGFEKLIEPLNHHR--CVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRM 366
N + L+ P H + ++ G I ++ N+G + +M +AV A++
Sbjct: 357 --GNDYNALL-PYVHEKVKAIVCLGVDNEPILRSFSNSGKEM--IETQSMDEAVRIAKKF 411
Query: 367 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
A GD ++LSP CASFD F+++E RG F+
Sbjct: 412 AAEGDTVLLSPACASFDLFKSYEDRGDQFK 441
>gi|383111005|ref|ZP_09931823.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp. D2]
gi|313694576|gb|EFS31411.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp. D2]
Length = 444
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 109/390 (27%), Positives = 191/390 (48%), Gaps = 45/390 (11%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKAQGTPVISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEDYHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHL-NEAIKGHRFNLAWI---GAFPGVKI 190
M+NY K + + + P Q L +K H + A + GA V+
Sbjct: 190 MQNYIDAKFRITQNQTPDDAFIFWNDDPIIRQELAKHGLKAHLYPFAAVKEDGAIAYVE- 248
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTI 249
D E K + ++ + + G+HN +N+ A +S L G+ E + +
Sbjct: 249 DHEVKITE------PIAFNMEQEELALTGQHNLYNSLAAGISANLA---GIAKENIRKAL 299
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
+ HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K
Sbjct: 300 SDFKGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK----- 352
Query: 310 ESNGFEKLIEPLNHHRC--VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA 367
N + + IE L +C ++ G + + GL + MKDAV A ++A
Sbjct: 353 -GNDYTE-IEDLVREKCSALVYLGLHNEKLHEFFDRFGLPVADVQTG-MKDAVEAAYKLA 409
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
G+ ++LSP CASFD F+++E RG F+E
Sbjct: 410 KKGETVLLSPCCASFDLFKSYEDRGDQFKE 439
>gi|378768550|ref|YP_005197023.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pantoea ananatis
LMG 5342]
gi|365188036|emb|CCF10986.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pantoea ananatis
LMG 5342]
Length = 438
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 118/379 (31%), Positives = 176/379 (46%), Gaps = 75/379 (19%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + VGGN+G P AL K Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGLP---------ALSLLKAPAQLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E + + +LN+T DH++R+ M+ Y K ++ + +VN G
Sbjct: 158 ELSSFQLETTHS-LKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENAQVCVVNADDG 216
Query: 160 L---------------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+ + G+ HLN+ + W+ A G K+
Sbjct: 217 MTMPVRGADARCVSFGIDIGDYHLNK-----QQGSIWLRA-KGEKV-------------- 256
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSV--LGLDIGVDVEALNSTIEILRTPPHRMQIV 262
L M ++G+HNY NA A +GL + AL + + PHR Q+V
Sbjct: 257 -----LNTDEMTLVGQHNYTNALAALALADAVGLPRSTSLSALAAYSGL----PHRFQLV 307
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKVLNGQESNGFEKLIEPL 321
H+ +GV W++DSKATN+ +T L L+ + + +LLGG K S F L L
Sbjct: 308 HQS-RGVRWINDSKATNVGSTEAALKGLQVNGTLWLLLGGDGK------SADFSPLATYL 360
Query: 322 NHHRC-VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 380
R + FG G + TL + ++ A+ R D ++LSP CA
Sbjct: 361 QGDRIRLYCFGRDGDAL-ATLRPDA----AVRTDTLQQAMEQIARQVQPDDMVLLSPACA 415
Query: 381 SFDEFRNFEHRGMVFQELA 399
S D+FRNFE RG VF +LA
Sbjct: 416 SLDQFRNFEQRGDVFAQLA 434
>gi|357060976|ref|ZP_09121738.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Alloprevotella rava
F0323]
gi|355375511|gb|EHG22797.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Alloprevotella rava
F0323]
Length = 443
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 113/409 (27%), Positives = 188/409 (45%), Gaps = 76/409 (18%)
Query: 12 QLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE 71
Q+KA G+ V+SE++FA + + K + +TG+NGK+T + + +L G
Sbjct: 80 QVKAAGIP--------VISEIEFAGRYT--NAKTICITGSNGKTTTTSLIYHILQKAGYN 129
Query: 72 AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTP 130
+ GN+G AL ++ K V+E+SS+Q++ N Y F ++V+LN+TP
Sbjct: 130 VGLAGNIGKSF--------ALQVAEGKHDWYVIELSSFQLD--NMYDFRADIAVLLNITP 179
Query: 131 DHLERHK-TMKNYALTKCHLFS---------------------HMVNTKLGLLPFGNQHL 168
DHL+R+ M+NY +K + H N+ +L F +
Sbjct: 180 DHLDRYDFKMQNYVNSKMRILQNQRPEDSFIYWAQDEWIPNELHKYNSPARMLEFSDMPK 239
Query: 169 NEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAV 228
EA+ NL I ++ SFE + + + + G HN N+
Sbjct: 240 AEAVAYEENNLLKI-----------SQPLSFE---------MDVDELSLPGLHNLRNSMA 279
Query: 229 AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLM 288
AL+ L GV E + + HR++ V D+ GV +++DSKATN++A L
Sbjct: 280 GALATLS--AGVAPEVVREGLSDFPGVEHRLEKVC-DVDGVHYINDSKATNVDACYWALA 336
Query: 289 DLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLS 347
++ V+++GG+ K N ++++ E + R ++ G + +G
Sbjct: 337 AMRT-PTVLIIGGKDK------GNDYKEIAELVKTKCRALVYLGADNKKLHDFF--DGFG 387
Query: 348 IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
+P +M D V R+A GD ++LSP CASFD FRN E RG F+
Sbjct: 388 LPVEDTHSMADCVKACARLAQKGDTVLLSPCCASFDLFRNMEDRGEQFK 436
>gi|417938397|ref|ZP_12581695.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
infantis SK970]
gi|343391487|gb|EGV04062.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
infantis SK970]
Length = 450
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 181/377 (48%), Gaps = 31/377 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LEKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTATGQNGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVA-------QTATDKDTLVMELSSFQL-MGIQEFHPEIAVITNLMPTHIDYHGSFEA 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ S+M +L F NQ L + + + N + K+D E
Sbjct: 203 YVAAKWNIQSNMTAVDYLVLNF-NQELAKEL-ATKTNATVVPFSTLEKVDGAYLEDGLLY 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F V + + V G HN N A+A ++V L GV+ E + T+ HR
Sbjct: 261 FRGEKV-----MAADEIGVPGSHNVEN-ALATIAVAKLR-GVENETIKETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q V + I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQFVDQ-INGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
+ + ++ G S + + G +P ++ DA A +A GD ++LSP
Sbjct: 367 PDITGLKKMVILGQSAERVKRAADKAG--VPYVDATDIADATRKASELAEEGDVVLLSPA 424
Query: 379 CASFDEFRNFEHRGMVF 395
AS+D + NFE RG +F
Sbjct: 425 NASWDMYANFEVRGDLF 441
>gi|375264444|ref|YP_005021887.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio sp.
EJY3]
gi|369839768|gb|AEX20912.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio sp.
EJY3]
Length = 437
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 120/388 (30%), Positives = 181/388 (46%), Gaps = 45/388 (11%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ +L G V+ +++ A + + + +A+TG+NGKSTV G M G+ VGGN
Sbjct: 85 IQSVLSQGIPVVGDIELFAWAVTKPV--VAITGSNGKSTVTDLTGVMAKAAGLSVGVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P AL + + V+E+SS+Q+E + + LNL+ DH++R++
Sbjct: 143 IGVP---------ALDLLDQEADLYVLELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYE 192
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG----AFPGVKIDTE 193
+M +Y K +F+H L N+ E H + G AF G++ D E
Sbjct: 193 SMADYRSAKLRIFNH------AELAVVNRDDQETFPDHDMPVVTFGCDEQAF-GLETDGE 245
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
KT + + S +K++G+HN N V L++L GVD +T++
Sbjct: 246 -KTWLLDHGQRVIASD----ELKLVGKHNLANVLVV-LALLKA-AGVDCHNTLNTLKNYT 298
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL--MDLKGHKCVILLGGQAKVLNGQES 311
HR Q+V D QGV WV+DSKATN+ +T L ++L G K +L+GG K G +
Sbjct: 299 GLTHRCQVVE-DNQGVKWVNDSKATNIASTMAALSGLELTG-KLYLLVGGVGK---GADF 353
Query: 312 NGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD 371
E + LN C FG G L M+D + GD
Sbjct: 354 TPLEPIFATLNLQLCC--FGKDGDEFLP------LHPSATRFDTMEDVIQQISSQLKAGD 405
Query: 372 AIVLSPGCASFDEFRNFEHRGMVFQELA 399
++LSP CASFD+F NF RG F LA
Sbjct: 406 MVMLSPACASFDQFDNFMARGDAFAALA 433
>gi|306829146|ref|ZP_07462336.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
mitis ATCC 6249]
gi|304428232|gb|EFM31322.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
mitis ATCC 6249]
Length = 450
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 107/378 (28%), Positives = 184/378 (48%), Gaps = 33/378 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQRGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTA 197
Y K ++ + M +L F NQ L + + A + F + K+D E
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKELATK--TQATVVPFSTLEKVDGAYLEDGQL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F V S++ V G HN N A+A ++V L GVD + + T+ H
Sbjct: 260 YFRGEVVMAASEI-----GVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R+Q V +I+G+ + +DSK+TN+ AT L K +++ GG + N F++L
Sbjct: 313 RLQFVD-EIKGIKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDEL 365
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
+ + + ++ G S + + G++ ++ DA A +AT GD ++LSP
Sbjct: 366 VPDITGLKRIVILGQSAERVKRAADKAGVA--YVDAKDIADATRKAYELATQGDVVLLSP 423
Query: 378 GCASFDEFRNFEHRGMVF 395
AS+D + NFE RG +F
Sbjct: 424 ANASWDMYANFEVRGDLF 441
>gi|322376972|ref|ZP_08051465.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
sp. M334]
gi|321282779|gb|EFX59786.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
sp. M334]
Length = 450
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 104/374 (27%), Positives = 184/374 (49%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVA-------QTATDKDTLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKELASK--TQATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V +I+GV + +DSK+TN+ AT L +K +++ GG + N F++L+ +
Sbjct: 317 VD-EIKGVKFYNDSKSTNILATQKALSGFDNNKVILIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + + S+ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAA--DKASVAYVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|149020325|ref|ZP_01835217.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP23-BS72]
gi|418102404|ref|ZP_12739480.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae NP070]
gi|419475080|ref|ZP_14014921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA14688]
gi|419486191|ref|ZP_14025958.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44128]
gi|421208522|ref|ZP_15665547.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070005]
gi|421224541|ref|ZP_15681287.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070768]
gi|421233699|ref|ZP_15690321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2061617]
gi|421240257|ref|ZP_15696806.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2080913]
gi|421249004|ref|ZP_15705467.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2082239]
gi|147930627|gb|EDK81609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP23-BS72]
gi|353776570|gb|EHD57045.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae NP070]
gi|379561418|gb|EHZ26435.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA14688]
gi|379589100|gb|EHZ53940.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44128]
gi|395576992|gb|EJG37546.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070005]
gi|395591877|gb|EJG52172.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070768]
gi|395602596|gb|EJG62738.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2061617]
gi|395609815|gb|EJG69900.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2080913]
gi|395615633|gb|EJG75649.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2082239]
Length = 450
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 184/374 (49%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGLFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLVKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|418134424|ref|ZP_12771282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA11426]
gi|353903014|gb|EHE78540.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA11426]
Length = 450
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 184/374 (49%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K + V+E+SS+Q+ + + F P ++V+ NL P H++ H
Sbjct: 151 ASQVA----QIASDK---DMLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGLFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|422644420|ref|ZP_16707558.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. maculicola str. ES4326]
gi|330957972|gb|EGH58232.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. maculicola str. ES4326]
Length = 448
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 112/364 (30%), Positives = 179/364 (49%), Gaps = 43/364 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAIAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRF--NLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E + F N F G++ + K +F+ + + + +KV
Sbjct: 221 ---SRPLIGEGLPCWTFGLNTPDFHGF-GLREENGEKYLAFQFENL-----MPVRELKVR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN A A LG +G+ +A+ +++ HR Q + R+ +GV + +DSKAT
Sbjct: 272 GAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL-REREGVHYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D+ G K V++ GG K + F L P+ H R + G
Sbjct: 329 NVGAALAAIEGLGADIDG-KLVLIAGGDGKGAD------FSGLRAPVAKHCRAAVLLGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
LI + L G ++P V ++ AV + +A +GDA++LSP CAS D F+N+E RG
Sbjct: 382 AELIAQVL---GDAVPLVRVDTLQAAVGRSAELARSGDAVLLSPACASLDMFKNYEERGR 438
Query: 394 VFQE 397
VF +
Sbjct: 439 VFAQ 442
>gi|160883882|ref|ZP_02064885.1| hypothetical protein BACOVA_01855 [Bacteroides ovatus ATCC 8483]
gi|237720376|ref|ZP_04550857.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
2_2_4]
gi|262405421|ref|ZP_06081971.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
2_1_22]
gi|293370476|ref|ZP_06617029.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
ovatus SD CMC 3f]
gi|294646202|ref|ZP_06723856.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
ovatus SD CC 2a]
gi|294809131|ref|ZP_06767849.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
xylanisolvens SD CC 1b]
gi|298480582|ref|ZP_06998779.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
D22]
gi|336404498|ref|ZP_08585193.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
1_1_30]
gi|345511027|ref|ZP_08790582.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp. D1]
gi|423290578|ref|ZP_17269427.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides ovatus
CL02T12C04]
gi|156110612|gb|EDO12357.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
ovatus ATCC 8483]
gi|229442629|gb|EEO48420.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp. D1]
gi|229450127|gb|EEO55918.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
2_2_4]
gi|262356296|gb|EEZ05386.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
2_1_22]
gi|292634468|gb|EFF53004.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
ovatus SD CMC 3f]
gi|292638420|gb|EFF56784.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
ovatus SD CC 2a]
gi|294443685|gb|EFG12434.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
xylanisolvens SD CC 1b]
gi|295086278|emb|CBK67801.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
xylanisolvens XB1A]
gi|298273403|gb|EFI14967.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
D22]
gi|335942295|gb|EGN04142.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
1_1_30]
gi|392665231|gb|EIY58759.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides ovatus
CL02T12C04]
Length = 444
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 109/390 (27%), Positives = 191/390 (48%), Gaps = 45/390 (11%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKAQGTPVISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEDYHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHL-NEAIKGHRFNLAWI---GAFPGVKI 190
M+NY K + + + P Q L +K H + A + GA V+
Sbjct: 190 MQNYIDAKFRITQNQTPDDAFIFWNDDPIIRQELAKHGLKAHLYPFAAVKEDGAIAYVE- 248
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTI 249
D E K + ++ + + G+HN +N+ A +S L G+ E + +
Sbjct: 249 DHEVKITE------PIAFNMEQEELALTGQHNLYNSLAAGISANLA---GIAKENIRKAL 299
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
+ HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K
Sbjct: 300 SDFKGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK----- 352
Query: 310 ESNGFEKLIEPLNHHRC--VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA 367
N + + IE L +C ++ G + + GL + MKDAV A ++A
Sbjct: 353 -GNDYTE-IEDLVREKCSALVYLGLHNEKLHEFFDRFGLPVADVQTG-MKDAVEAAYKLA 409
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
G+ ++LSP CASFD F+++E RG F+E
Sbjct: 410 KKGETVLLSPCCASFDLFKSYEDRGDQFKE 439
>gi|336397531|ref|ZP_08578331.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prevotella
multisaccharivorax DSM 17128]
gi|336067267|gb|EGN55901.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prevotella
multisaccharivorax DSM 17128]
Length = 470
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 104/386 (26%), Positives = 191/386 (49%), Gaps = 36/386 (9%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L++ G ++SE++FA + K++ +TG+NGK+T + + + G +A + GN+G
Sbjct: 109 LIKQGTHIISEIEFAGRYTHS--KMICITGSNGKTTTTSLIYHIFKKAGYDAGLAGNIGR 166
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ + ++E+SS+Q++ N Y F ++++LN+TPDHL+R+
Sbjct: 167 SL--------ALQVAENPHEYYIIELSSFQLD--NMYDFRANIAILLNITPDHLDRYDFK 216
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+NYA K + + T+ F N + +F++ + P +I +A A
Sbjct: 217 FENYADAKLRITQNQ--TEDDSFIFWNDDPVIKKEMEKFDIKAVRC-PFSEIKEDASVAY 273
Query: 199 FEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
E + ++ + + G+HN +N+ A L+ I D+ + ++
Sbjct: 274 IEEGEYKLEYPTPFNMEQETLSLTGKHNLYNSLAAGLAANISGIKKDI--IRKSLSDFPG 331
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGF 314
HR++ V + + GV +++DSKATN++A C ++ +++LGG+ K N +
Sbjct: 332 VEHRLEKVCK-VGGVQYINDSKATNVDA-CWYALESMTTPTILILGGKDK------GNDY 383
Query: 315 EKLIEPLNHHRCV--ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 372
+ + L +CV + G + + IP +MK+ VN MA G+
Sbjct: 384 HHIFD-LVKEKCVGLVYLGADNTKLHNNF--DSFGIPVRDTHSMKECVNACYEMAKPGET 440
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQEL 398
++LSP CASFD F+N E RG F+EL
Sbjct: 441 VLLSPCCASFDLFKNMEDRGEQFKEL 466
>gi|194335053|ref|YP_002016913.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prosthecochloris
aestuarii DSM 271]
gi|194312871|gb|ACF47266.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Prosthecochloris
aestuarii DSM 271]
Length = 469
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 121/401 (30%), Positives = 188/401 (46%), Gaps = 64/401 (15%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQM-LNHL---GIEAFVGGNLGNPLS 83
V SE++ A+ P +I+AVTGT+GK+T T + + +H G F GN+G P S
Sbjct: 97 VYSEIEAASWFCP--ARIIAVTGTDGKTTTATLIAAICADHALAAGYRVFSVGNIGVPFS 154
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNY 142
++ S +AVVEVSSYQ+E +F P ++++ N+TPDHL+R+ +M+ Y
Sbjct: 155 -------SMVGSMASGDIAVVEVSSYQLE-GCTWFRPDIALMTNITPDHLDRYDGSMRLY 206
Query: 143 ALTKCHLFSH-------MVNT-----------KLGLLP----FG---NQHLNEAIKGHRF 177
A K +FS +VN +LG++P FG + A G
Sbjct: 207 AEAKYRIFSRQRQDDTLIVNADDPILRQRFEERLGVVPQLAAFGLDAGRTRAFAASGAVT 266
Query: 178 NLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD 237
WI F +D V++ L MGRHN NA AAL+
Sbjct: 267 EGGWITLFKSGSLDER------------VIAHEDLLKRGFMGRHNLSNALAAALAAD--A 312
Query: 238 IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI 297
GV + ++ ++ HR + V +I GV ++DSKATNL A L + G V+
Sbjct: 313 AGVPLSSIKRALKAFGGVEHRQEYVC-EIDGVICINDSKATNLNAMRQALEAVSGP--VV 369
Query: 298 LLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMK 357
L+ G G++ +G + + L + + G + G S+P +++
Sbjct: 370 LIAG------GRDKDGDYRELRDLVASKVEMLVAL-GEAADRFTGAYGESVPAVTAGSLR 422
Query: 358 DAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
+AV + A G ++ SPGC+SFD F NFEHRG +F+ +
Sbjct: 423 EAVRLGLQHARRGSTLLFSPGCSSFDMFDNFEHRGAMFKSI 463
>gi|423214886|ref|ZP_17201414.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
xylanisolvens CL03T12C04]
gi|392692149|gb|EIY85387.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
xylanisolvens CL03T12C04]
Length = 444
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 109/390 (27%), Positives = 191/390 (48%), Gaps = 45/390 (11%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKAQGTPVISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEDYHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHL-NEAIKGHRFNLAWI---GAFPGVKI 190
M+NY K + + + P Q L +K H + A + GA V+
Sbjct: 190 MQNYIDAKFRITQNQTPDDAFIFWNDDPIIRQELAKHGLKAHLYPFAAVKEDGAIAYVE- 248
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTI 249
D E K + ++ + + G+HN +N+ A +S L G+ E + +
Sbjct: 249 DHEVKITE------PIAFNMEQEELALTGQHNLYNSLAAGISANLA---GIAKENIRKAL 299
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
+ HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K
Sbjct: 300 SDFKGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK----- 352
Query: 310 ESNGFEKLIEPLNHHRC--VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA 367
N + + IE L +C ++ G + + GL + MKDAV A ++A
Sbjct: 353 -GNDYTE-IEDLVREKCSALVYLGLHNEKLHEFFDRFGLPVADVQTG-MKDAVEAAYKLA 409
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
G+ ++LSP CASFD F+++E RG F+E
Sbjct: 410 KKGETVLLSPCCASFDLFKSYEDRGDQFKE 439
>gi|405760874|ref|YP_006701470.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SPNA45]
gi|404277763|emb|CCM08311.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SPNA45]
Length = 450
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 184/374 (49%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGLFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLVKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|258620874|ref|ZP_05715908.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
VM573]
gi|258586262|gb|EEW10977.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
VM573]
Length = 440
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 120/427 (28%), Positives = 192/427 (44%), Gaps = 80/427 (18%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + + ++A+TG+NG
Sbjct: 61 WNLEWLLSADLVVTNPGIALATPEIQQVLATGIPVVGDIELFAWHVDK--PVIAITGSNG 118
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++ VGGN+G P AL P+ ++ V+E+SS+Q+E
Sbjct: 119 KSTVTDLSGVLANAAGVKTAVGGNIGVP---------ALDLISPEVELYVLELSSFQLET 169
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIK 173
+ + LNL+ DH++R++ M++Y K +F H +
Sbjct: 170 TSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVV--------------- 213
Query: 174 GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHN--------------MKVMG 219
N + FP + T E PA V++ Q H + ++G
Sbjct: 214 ----NADDVQTFPDHAAHLQVVTFGVEQPAQFSVAEHQGHEYLFARDNAVLASSELSLVG 269
Query: 220 RHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
RHN N +A L G+++ + ++AL S + HR Q+V D G+ WV+DSKA
Sbjct: 270 RHNVANVLTVLALLDSAGVNVRLALDALKSYTGLT----HRCQVV-ADNHGIKWVNDSKA 324
Query: 278 TNLEATCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVL 336
TN+ +T L LK + +L+GG K G + + L C FG
Sbjct: 325 TNVASTLAALSGLKVEGQLYLLVGGVGK---GADFTPLAPVFATLPLQLCC--FG----- 374
Query: 337 IWKTLVNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 392
V+ +P A D+ V R +GD ++LSP CASFD+F+NF RG
Sbjct: 375 -----VDGDKFMPLHPSARFYDSMESIVRSIRPELKSGDMVLLSPACASFDQFKNFMARG 429
Query: 393 MVFQELA 399
+F +LA
Sbjct: 430 DIFAQLA 436
>gi|421487907|ref|ZP_15935305.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
oralis SK304]
gi|400369869|gb|EJP22866.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
oralis SK304]
Length = 450
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 109/378 (28%), Positives = 184/378 (48%), Gaps = 33/378 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEA 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTA 197
Y K ++ ++M +L F NQ L + + A + F + KID E
Sbjct: 203 YVAAKWNIQNNMTAADFLVLNF-NQDLAKELATK--TQATVVPFSTLEKIDGAYLEDGQL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F V S++ V G HN N A+A ++V L GVD + + T+ H
Sbjct: 260 YFRGEVVMAASEI-----GVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R+Q V +I+GV + +DSK+TN+ AT L K +++ GG + N F++L
Sbjct: 313 RLQFVD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDEL 365
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
+ + + ++ G S + + G + ++ DA A +AT GD ++LSP
Sbjct: 366 VPDITGLKKMVILGQSAERVKRAADKAG--VAYVDATDIADATRKAYELATQGDVVLLSP 423
Query: 378 GCASFDEFRNFEHRGMVF 395
AS+D + NFE RG +F
Sbjct: 424 ANASWDMYANFEVRGDLF 441
>gi|317132325|ref|YP_004091639.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ethanoligenens
harbinense YUAN-3]
gi|315470304|gb|ADU26908.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ethanoligenens
harbinense YUAN-3]
Length = 458
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 184/384 (47%), Gaps = 35/384 (9%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V SE++ +V P +I+AVTG++GK+T T + ++L G +GGN+G PL
Sbjct: 96 GVAVTSEMEVFFEVCP--CRIIAVTGSDGKTTTTTLISEILKREGRRVHLGGNIGRPL-- 151
Query: 85 AAFHCIALPSSKP--KFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
LP + + VAVVE+SS+Q+ + P V+V+ N+TP+HL+ HK M Y
Sbjct: 152 -------LPEIETIREDDVAVVELSSFQLISMRR--SPDVAVITNITPNHLDMHKDMVEY 202
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQ---HLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
K H+F H +L F N + E ++G + + P T+A +
Sbjct: 203 IQAKKHIFLHQNGCSKTVLNFDNAITVPMAEEVRGQCLGFS-LKEPPRFGCYTDADGVIW 261
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ + ++ + G HN N AA +V GL E + HR+
Sbjct: 262 FLSGEQKHYVMHRDDILLPGSHNVENYMAAAAAVWGL---AKPETILGVARSFTGVEHRI 318
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL-I 318
++V R++ GV + +DS AT T GL K +++ GG K + F+ L
Sbjct: 319 ELV-RELDGVRYYNDSIATTPSRTLAGLRAFS-QKVILIAGGYDKHIP------FDVLGP 370
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVN-NGLSI---PCFAVANMKDAVNHARRMATNGDAIV 374
+ +C+I G + I + G + P V+ +++AV AR A +GD ++
Sbjct: 371 AAVQSVKCLILLGATADKIATAVEGAEGYATGEPPILRVSGLEEAVQTARAQAASGDVVL 430
Query: 375 LSPGCASFDEFRNFEHRGMVFQEL 398
LSP CASFD F++FE RG +F+ +
Sbjct: 431 LSPACASFDMFKDFETRGDLFKNI 454
>gi|89095261|ref|ZP_01168182.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neptuniibacter
caesariensis]
gi|89080468|gb|EAR59719.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanospirillum
sp. MED92]
Length = 449
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 118/368 (32%), Positives = 177/368 (48%), Gaps = 47/368 (12%)
Query: 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQV 101
S ++A+TG+N KSTV T VG+M GI V GN+G P+ E +P+ +
Sbjct: 108 SAPVIAITGSNAKSTVTTLVGEMAEAAGINVGVCGNIGTPVLEML--------EQPEKDL 159
Query: 102 AVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLG-- 159
V+E+SS+Q+E N V+ VLN++PDH++R+ +M++Y K +F N +
Sbjct: 160 YVIELSSFQLETTNDLRA-EVATVLNISPDHMDRYDSMQDYYKAKHRIFRGAKNVVVNRD 218
Query: 160 ------LLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLH 213
LLP G +K F+L P +K+ + A+G+ +
Sbjct: 219 DSLTAPLLPQG-------VKQTAFHLGK----PDLKLFGLIEDQGDVWLALGLDKLIAAS 267
Query: 214 NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
+K+ GRHN NA A + +D A+ + + HR + V QGVT+ +
Sbjct: 268 ELKMRGRHNLANALAALALGQAAGLPMD--AMLNALRGFTGLRHRCEWVAEH-QGVTYFN 324
Query: 274 DSKATNLEATCTGLMDLKG-----HKCVILLGGQAKVLNGQESNGFEKLIEPL-NHHRCV 327
DSK TN+ AT L L G + V++ GG K G E F +L EPL N+ R +
Sbjct: 325 DSKGTNVGATVAALNGLGGTLSEENGIVLIAGGDGK---GAE---FVELAEPLRNYGRAL 378
Query: 328 ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ G G + L + I A M +AV A ++A +GD ++LSP CASFD F
Sbjct: 379 VYIGVDG----ERLASQCGDINSRPAATMDEAVVIASQLAKSGDIVLLSPACASFDMFAG 434
Query: 388 FEHRGMVF 395
F RG F
Sbjct: 435 FPQRGDAF 442
>gi|127514383|ref|YP_001095580.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
loihica PV-4]
gi|126639678|gb|ABO25321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella loihica
PV-4]
Length = 443
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 113/369 (30%), Positives = 175/369 (47%), Gaps = 44/369 (11%)
Query: 34 FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALP 93
FA + R ++ +TG+NGKSTV T VG+M G++ VGGN+G P+ L
Sbjct: 100 FARALADRPACVIGITGSNGKSTVTTLVGEMAAKAGLKVAVGGNIGVPV---------LD 150
Query: 94 SSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHM 153
++ V+E+SS+Q+E + C + + LN++ DH++R+ +++Y K L+
Sbjct: 151 LLDGDHELFVLELSSFQLETTSSLNCISAT-CLNISEDHMDRYSDLESYRQAKLRLYDQ- 208
Query: 154 VNTKLGLLPFGNQHL----NEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ 209
TKL + F L NE + + F L + P + + + V G
Sbjct: 209 --TKLAI--FNRDDLLTRPNEPMNQNSFGL----SLP----EGDEWGVNHGVLVHGTTEY 256
Query: 210 LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGV 269
+ + ++G HN N VA L GVD A+ + + HR ++V + QGV
Sbjct: 257 VAGAQVSLVGSHNQANLLVAM--ALADSAGVDKAAMVEVAKQFKGLAHRCELVGKH-QGV 313
Query: 270 TWVDDSKATNLEATCTGLMDLKGHKCVILL--GGQAKVLNGQESNGFEKLIEPLNHHRCV 327
++V+DSKATN+ AT L L H+ I+L GG K + F L L V
Sbjct: 314 SYVNDSKATNVGATIAALQGLSDHEGQIILIAGGDGKGAD------FSTLRGALLGVGQV 367
Query: 328 ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
IT G G I + V +M++AV A ++A GD ++LSP CAS D + N
Sbjct: 368 ITLGKDGDRIAEQFDG------AIRVESMQEAVAQAAQLAKPGDLVLLSPACASLDMYAN 421
Query: 388 FEHRGMVFQ 396
F RG F+
Sbjct: 422 FMARGDDFR 430
>gi|419522826|ref|ZP_14062408.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13723]
gi|379559304|gb|EHZ24333.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13723]
Length = 434
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 184/374 (49%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 77 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 134
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 135 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGLFEE 186
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 187 YVAAKWNIQNKMTAADFLVLNF-NQDLVKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 243
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 244 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 300
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 301 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 353
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 354 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANAS 411
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 412 WDMYANFEVRGDLF 425
>gi|302380550|ref|ZP_07269015.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
magna ACS-171-V-Col3]
gi|302311493|gb|EFK93509.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
magna ACS-171-V-Col3]
Length = 441
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 112/372 (30%), Positives = 188/372 (50%), Gaps = 19/372 (5%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
V+S+L+ A Q I IKI+A+TGTNGK+T + + +MLN G +A GN+G +
Sbjct: 83 EVVSDLELA-QRIFGDIKIVAITGTNGKTTTTSLMTKMLNDSGRKAISIGNIGVGMLWEI 141
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
++ S K + V+E SS+Q+E K F P S ++N+TPDH++ H +M+NY K
Sbjct: 142 YN-----SDKDTY--FVIECSSFQLE-STKNFKPQYSCIINITPDHIDWHGSMQNYVNAK 193
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
++ + +L +++ E K + N+ I VK + K S
Sbjct: 194 KNVLKNQDENCYTVLNADDEYYEECKKFTKANVYDISTSKNVKRGSFIKDNSIYFSDSDC 253
Query: 207 VSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI 266
+ L N+ ++G HNY N L IG++ +++ T+ HR++ V RD+
Sbjct: 254 DKIIDLKNVNLIGYHNYQNVLFCV--TLAKLIGINDDSIRETLMSFSGVEHRLEFV-RDL 310
Query: 267 QGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRC 326
GV + +DSK TN++A+ + + +IL GG K ++ N F I + +
Sbjct: 311 SGVKYYNDSKGTNVDASVKAIESFDKN-VIILAGGYDKKVS--LDNFF---IAGKDKFKA 364
Query: 327 VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR 386
+I G + L + G + + V +MK AV A ++A +GD ++LSP AS+ +
Sbjct: 365 LILMGQTRDLFEQKAKEYGF-MNIYLVDDMKQAVTQANKIAESGDVVLLSPASASWGMYN 423
Query: 387 NFEHRGMVFQEL 398
N+E RG F++L
Sbjct: 424 NYEERGNEFKDL 435
>gi|365877481|ref|ZP_09416985.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Elizabethkingia
anophelis Ag1]
gi|442587756|ref|ZP_21006571.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Elizabethkingia
anophelis R26]
gi|365754914|gb|EHM96849.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Elizabethkingia
anophelis Ag1]
gi|442562610|gb|ELR79830.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Elizabethkingia
anophelis R26]
Length = 459
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 106/387 (27%), Positives = 194/387 (50%), Gaps = 26/387 (6%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + + Q G R+ SEL+FA KI+AVTG+NGK+T + + +L + G
Sbjct: 85 KAEIVGKIHQKGIRLSSELEFAYHFT--DAKIIAVTGSNGKTTTTSLIYHILKNDGYNVG 142
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDH 132
+GGN+G A + F V+EVSS+Q++ I N F P +S++LNL+ DH
Sbjct: 143 LGGNIGKSF--------AYQVATEDFDYYVLEVSSFQLDDIQN--FRPYISLLLNLSQDH 192
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID 191
L+++ + YAL K + + N + ++ + ++ N I K++
Sbjct: 193 LDQYNYNYEEYALAKFRIAENQENDNYFIYNKDDEMSQKILQSLEINATMIPFSLKEKLN 252
Query: 192 TEAKTASFE-VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
+ E V + ++++ ++ ++G HN N+ A S+ G + + E++ +++
Sbjct: 253 EGGYSVDNELVVKLQEDFRMKISDLSLVGNHNVANSLAA--SIAGKLLNISNESIRNSLM 310
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
+ PHR++ V I V +++DSKATN+ A L +K + + ++GG K G +
Sbjct: 311 TFQAVPHRLEQVAV-INDVKYINDSKATNVNAAYYALESVK-YPAIWIVGGIDK---GND 365
Query: 311 SNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 370
E L++ R ++ G I + N I F ++M++ V + +A G
Sbjct: 366 YTEIEDLVKK--KVRAIVCLGLDNEKIIQFFRNKKDLI--FETSSMEECVKLCKSIAEPG 421
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVFQE 397
D ++L+P C+SFD F+++E RG F++
Sbjct: 422 DTVLLAPCCSSFDLFKSYEDRGDQFKK 448
>gi|345881464|ref|ZP_08832982.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Prevotella oulorum
F0390]
gi|343919429|gb|EGV30176.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Prevotella oulorum
F0390]
Length = 443
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 108/388 (27%), Positives = 193/388 (49%), Gaps = 40/388 (10%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L+Q G ++SE++FA + K++ +TG+NGK+T + + + G++ + GN+G
Sbjct: 82 LMQQGTPIISEIEFAGRYT--HAKMVCITGSNGKTTTTSLIYHIFKTAGLDVGLAGNIG- 138
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHKT- 138
H +AL ++ + V+E+SS+Q++ N Y F V+++LN+TPDHL+R+
Sbjct: 139 -------HSLALQVAESPHEYYVIELSSFQLD--NMYQFKADVAILLNITPDHLDRYDNC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP-------GVKID 191
+NYA K + + + + + + ++ H + +P GV
Sbjct: 190 FENYAEAKLRILQNQTQADSFIYWKDDPVIAKELQKHAVHAK---TYPFAAHKENGVVGY 246
Query: 192 TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
E + + P+ + Q +L + G+HN +N+ A L+ + I D+ + ++
Sbjct: 247 IEQEQYTLAYPSTFQMPQSEL---SLTGKHNLYNSLAAGLAANIVGIPHDI--IRQSLSD 301
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQES 311
HR++ V + + V +++DSKATN++A C ++ +++LGG+ K
Sbjct: 302 FPGVEHRLEKVCK-VNNVLYINDSKATNVDA-CWYALESMTTPTILILGGRDK------G 353
Query: 312 NGFEKLIEPLNHHRCVITFGYSGVLIWKTLVN-NGLSIPCFAVANMKDAVNHARRMATNG 370
N ++ L+ PL RCV Y G K N + L +P +M D V MA G
Sbjct: 354 NDYKPLL-PLVKERCV-GLVYLGANNQKLHDNFDHLGLPVRDTHSMSDCVKACFEMAKPG 411
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVFQEL 398
+ ++LSP CASFD F+N E RG F+ L
Sbjct: 412 ETVLLSPCCASFDLFKNMEDRGEQFKTL 439
>gi|386758241|ref|YP_006231457.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
JS]
gi|384931523|gb|AFI28201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
JS]
Length = 451
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 111/374 (29%), Positives = 180/374 (48%), Gaps = 26/374 (6%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V +E++ A + + K + +TG+NGK+T T + +ML +A + GN+G
Sbjct: 95 KRGIPVWTEIELAYYLT--NAKFIGITGSNGKTTTTTLIYEMLKADSQKALIAGNIGTVA 152
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
SE A+H + V E+SS+Q+ + F P +S++LN+ HL+ H T +NY
Sbjct: 153 SEVAYHADG-------DEWIVTELSSFQL-MGTHAFRPEISLILNVFDAHLDYHHTRENY 204
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K ++ H + ++ NQ + ++ A + F K + +
Sbjct: 205 EKAKQKVYLHQTASDKAII---NQDDDTVVRLAEAGKAEMIPFSVSKTLEQGAYVKDSMI 261
Query: 203 AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
+ L L + + G HN N +AA++V+ G EA+ + HR+Q V
Sbjct: 262 MFNGEAILPLEEVVLPGAHNLENI-LAAIAVVKT-AGASNEAVKKVLTSFTGVKHRLQYV 319
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322
+ G + +DSKATN+ AT L K VILL G NGF+ L +
Sbjct: 320 -TTVNGRKFYNDSKATNILATSKALSAFD--KPVILLAGGL-----DRGNGFDDLKPYMK 371
Query: 323 HHRCVITFGYSGVLIWKTLVNNGLSIP-CFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
H + V+TFG + + K + N L I V N++ AV+ A ++ GD I+LSP CAS
Sbjct: 372 HVKAVLTFGQTAPKLEK--LGNELGIQHVKRVDNVEQAVSAAFAISNEGDVILLSPACAS 429
Query: 382 FDEFRNFEHRGMVF 395
+D+F+ FE RG +F
Sbjct: 430 WDQFKTFEERGDMF 443
>gi|303254732|ref|ZP_07340833.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae BS455]
gi|303259957|ref|ZP_07345931.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP-BS293]
gi|303261363|ref|ZP_07347311.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP14-BS292]
gi|303264029|ref|ZP_07349950.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae BS397]
gi|303266343|ref|ZP_07352233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae BS457]
gi|303268810|ref|ZP_07354598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae BS458]
gi|387758960|ref|YP_006065938.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae INV200]
gi|410476145|ref|YP_006742904.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae gamPNI0373]
gi|418086436|ref|ZP_12723607.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47033]
gi|418093534|ref|ZP_12730664.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA49138]
gi|418139005|ref|ZP_12775836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13338]
gi|418141294|ref|ZP_12778107.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13455]
gi|418152433|ref|ZP_12789173.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA16121]
gi|418164032|ref|ZP_12800706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17371]
gi|418180046|ref|ZP_12816619.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41688]
gi|418199624|ref|ZP_12836071.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47976]
gi|418201974|ref|ZP_12838404.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA52306]
gi|419455102|ref|ZP_13995062.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae EU-NP04]
gi|419514249|ref|ZP_14053877.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae England14-9]
gi|419518503|ref|ZP_14058110.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA08825]
gi|421267901|ref|ZP_15718773.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SPAR95]
gi|421284916|ref|ZP_15735693.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA60190]
gi|421297297|ref|ZP_15748000.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA58581]
gi|421306880|ref|ZP_15757526.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA60132]
gi|444388098|ref|ZP_21186090.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PCS125219]
gi|444390179|ref|ZP_21188094.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PCS70012]
gi|444391680|ref|ZP_21189492.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PCS81218]
gi|444394188|ref|ZP_21191741.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0002]
gi|444397139|ref|ZP_21194626.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0006]
gi|444403562|ref|ZP_21200642.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0008]
gi|444404509|ref|ZP_21201460.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0009]
gi|444408812|ref|ZP_21205442.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0010]
gi|444418035|ref|ZP_21214029.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0360]
gi|444419135|ref|ZP_21215017.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0427]
gi|301801549|emb|CBW34241.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae INV200]
gi|302598272|gb|EFL65317.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae BS455]
gi|302637497|gb|EFL67984.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP14-BS292]
gi|302638876|gb|EFL69337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP-BS293]
gi|302641675|gb|EFL72034.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae BS458]
gi|302644154|gb|EFL74411.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae BS457]
gi|302646434|gb|EFL76660.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae BS397]
gi|353759699|gb|EHD40282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47033]
gi|353767099|gb|EHD47638.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA49138]
gi|353805545|gb|EHD85819.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13455]
gi|353819078|gb|EHD99276.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA16121]
gi|353832359|gb|EHE12477.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17371]
gi|353846374|gb|EHE26407.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41688]
gi|353866302|gb|EHE46204.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47976]
gi|353867777|gb|EHE47667.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA52306]
gi|353905842|gb|EHE81258.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13338]
gi|379629559|gb|EHZ94153.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae EU-NP04]
gi|379638739|gb|EIA03284.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae England14-9]
gi|379641482|gb|EIA06017.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA08825]
gi|395871325|gb|EJG82431.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SPAR95]
gi|395886895|gb|EJG97910.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA60190]
gi|395892871|gb|EJH03861.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA58581]
gi|395908843|gb|EJH19720.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA60132]
gi|406369090|gb|AFS42780.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae gamPNI0373]
gi|444250644|gb|ELU57122.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PCS125219]
gi|444256642|gb|ELU62980.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PCS70012]
gi|444261255|gb|ELU67559.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0002]
gi|444262370|gb|ELU68668.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0006]
gi|444264008|gb|ELU70129.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0008]
gi|444265062|gb|ELU71093.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PCS81218]
gi|444269106|gb|ELU74921.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0010]
gi|444276640|gb|ELU82185.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0009]
gi|444282161|gb|ELU87441.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0360]
gi|444287446|gb|ELU92373.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0427]
Length = 450
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 184/374 (49%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGLFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLVKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|444400342|ref|ZP_21197749.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase, partial
[Streptococcus pneumoniae PNI0007]
gi|444266634|gb|ELU72577.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase, partial
[Streptococcus pneumoniae PNI0007]
Length = 418
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 184/374 (49%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 61 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 118
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 119 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGLFEE 170
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 171 YVAAKWNIQNKMTAADFLVLNF-NQDLVKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 227
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 228 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 284
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 285 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 337
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 338 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANAS 395
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 396 WDMYANFEVRGDLF 409
>gi|313147882|ref|ZP_07810075.1| D-glutamic acid-adding enzyme [Bacteroides fragilis 3_1_12]
gi|313136649|gb|EFR54009.1| D-glutamic acid-adding enzyme [Bacteroides fragilis 3_1_12]
Length = 444
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 111/394 (28%), Positives = 195/394 (49%), Gaps = 53/394 (13%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKEQGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEEEHDYYVIELSSFQLD--NMYKFRADIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA--FPGVKIDTEAKT 196
M+NY K + + T F N ++ I + I A +P I E
Sbjct: 190 MQNYINAKFRITQN--QTSEDAFIFWN---DDPIIKRELDKHGICAHLYPFSAIKEEGSI 244
Query: 197 ASFEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTIEI 251
A E V + + ++ + + G+HN +N+ A +S L G+ E + +
Sbjct: 245 AYVEDHEVVITAPIAFNMEQEQLALTGQHNLYNSLAAGISANLA---GITKENIRRALSD 301
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQES 311
+ HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K
Sbjct: 302 FQGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK------G 353
Query: 312 NGFEKLIEPLNHHRCVITFGYSGVLIWKTLVN-------NGLSIPCFAV-ANMKDAVNHA 363
N + + IE L +C L++ L N + L +P V MKDAV A
Sbjct: 354 NDYTE-IEELVREKC-------SALVYLGLHNEKLHEFFDRLGLPVAEVQTGMKDAVEAA 405
Query: 364 RRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
++A G+ ++LSP CASFD F+++E RG F++
Sbjct: 406 YKLAKKGETVLLSPCCASFDLFKSYEDRGDQFKK 439
>gi|169824312|ref|YP_001691923.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Finegoldia magna
ATCC 29328]
gi|167831117|dbj|BAG08033.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Finegoldia magna
ATCC 29328]
Length = 441
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 112/372 (30%), Positives = 188/372 (50%), Gaps = 19/372 (5%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
V+S+L+ A Q I IKI+A+TGTNGK+T + + +MLN G +A GN+G +
Sbjct: 83 EVVSDLELA-QRIFGDIKIVAITGTNGKTTTTSLMTKMLNDSGRKAISIGNIGVGMLWEI 141
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
++ S K + V+E SS+Q+E K F P S ++N+TPDH++ H +M+NY K
Sbjct: 142 YN-----SDKDTY--FVIECSSFQLE-STKNFKPQYSCIINITPDHIDWHGSMQNYVNAK 193
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
++ + +L +++ E K + N+ I VK + K S
Sbjct: 194 KNVLKNQDENCYTVLNADDEYYEECKKFTKANVYDISTSKNVKRGSFIKDNSIYFSDSDC 253
Query: 207 VSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI 266
+ L ++K++G HNY N L IG++ +++ T+ HR++ V RD+
Sbjct: 254 DKIIDLKDVKLIGYHNYQNVLFCV--TLAKLIGINDDSIRETLMSFSGVEHRLEFV-RDL 310
Query: 267 QGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRC 326
GV + +DSK TN++A+ + + +IL GG K ++ N F I + +
Sbjct: 311 SGVKYYNDSKGTNVDASVKAIESFDKN-VIILAGGYDKKVS--LDNFF---IAGKDKFKA 364
Query: 327 VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR 386
+I G + L + G + V +MK AV A ++A +GD ++LSP AS+ +
Sbjct: 365 LILMGQTRDLFEQKAKEYGFK-HIYLVDDMKQAVTQANKIAESGDVVLLSPASASWGMYN 423
Query: 387 NFEHRGMVFQEL 398
N+E RG F++L
Sbjct: 424 NYEERGNEFKDL 435
>gi|152998950|ref|YP_001364631.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
baltica OS185]
gi|151363568|gb|ABS06568.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
OS185]
Length = 439
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 119/385 (30%), Positives = 180/385 (46%), Gaps = 53/385 (13%)
Query: 25 GKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
G V+ +++ FA ++ R ++ +TG+NGKSTV T VG+M GI VGGN+G P
Sbjct: 90 GIEVIGDVELFAREIADRKPCVIGITGSNGKSTVTTLVGEMAREAGIAVAVGGNIGVP-- 147
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
AL + V+E+SS+Q+E + C V+ LN++ DH++R+ + Y
Sbjct: 148 -------ALDLLHENADLFVLELSSFQLETTHSLKC-VVATCLNISEDHMDRYSDIAAYR 199
Query: 144 LTKCHLF--SHMV----NTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
K L+ S V + KL + P E + + F LA A D++
Sbjct: 200 EAKLRLYKQSRAVLFNRDDKLTVPP-------EPMNQNSFGLAAPEADEWGISDSKIYHG 252
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTP 255
S E+ + + + ++G HN+ N AA+A + V +GVD + +
Sbjct: 253 SSEI--------MPITEVSLIGSHNHANLLAAMALVDV----VGVDKQIMAKVARSFTGL 300
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKVLNGQESNG 313
HR ++V GVT+V+DSKATN+ AT L L H +++ GG K +
Sbjct: 301 SHRCEVVGIK-NGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDGKGAD------ 353
Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
F+ L L +IT G G I L V M AV A +AT+GD +
Sbjct: 354 FKPLGVALAKVTHLITLGRDGKKIA------ALKDGAVRVETMAAAVTKAAELATSGDIV 407
Query: 374 VLSPGCASFDEFRNFEHRGMVFQEL 398
+LSP CAS D + NF RG F+ L
Sbjct: 408 LLSPACASLDMYSNFMARGDDFRNL 432
>gi|387791883|ref|YP_006256948.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Solitalea
canadensis DSM 3403]
gi|379654716|gb|AFD07772.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Solitalea
canadensis DSM 3403]
Length = 447
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 101/389 (25%), Positives = 195/389 (50%), Gaps = 31/389 (7%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + +++ G R++SE++FA + K + +TG+NGK+T +L G+
Sbjct: 78 KAPIVKKIIEKGIRIVSEIEFAGRY--NKAKTICITGSNGKTTTTMLTYHILQKAGLNVG 135
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+G ++ ++ + V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 136 LAGNVGQSFAKQV--------AEDNYDYYVLELSSFQLD--NMYEFKADIAILLNITPDH 185
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID 191
L+R+ M+NY +K + + + + ++ + + ++F A + F +
Sbjct: 186 LDRYDYKMQNYVDSKFRVTQNQTSADAFIYCLDDEETMKVMANNKFE-ARLFPFSLAQKV 244
Query: 192 TEAKTASFEVPAVGVVSQ---LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
+ A+ + + + + + + G+HN +N+ A ++ L+I D +L +
Sbjct: 245 EQGAYATEDTIYIQTNKNNFNMTISELALQGKHNVNNSMAAGIAAKLLEIRSD--SLRES 302
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG 308
+ + PHR++ V R IQG+ +++DSKATN+ + L + K V + GG K
Sbjct: 303 LGDFQNVPHRLEHVAR-IQGIEFINDSKATNVNSVWFALESM-NTKVVWIAGGVDK---- 356
Query: 309 QESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA 367
N + L E + + ++ G I ++ + I A+ ++AVN A +A
Sbjct: 357 --GNDYSMLYELVKDKVKAIVCLGKDNKKIHDAF-DDKVEI-IVNTASAEEAVNVAYHLA 412
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
T GD ++LSP CASFD F+++E RG F+
Sbjct: 413 TKGDTVLLSPACASFDLFKSYEDRGDQFK 441
>gi|288574849|ref|ZP_06393206.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288570590|gb|EFC92147.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 453
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 122/388 (31%), Positives = 196/388 (50%), Gaps = 44/388 (11%)
Query: 23 QSGKRVMSELDFAAQVIPR-SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+G +VM E+DF V+P+ K++ VTGTNGK+T + + +L G++A GN+G+P
Sbjct: 89 DAGIKVMGEVDF---VLPKLDGKVVVVTGTNGKTTTTSLIAHLLEVSGLDALALGNIGSP 145
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
L + A + V V+E+SS+Q+ K +SV+ N+ PDH++ H + +N
Sbjct: 146 LGDFAGE---------RRDVFVIELSSFQLHWTEKSEF-DISVITNIAPDHIDWHGSYEN 195
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG-------AFPGVKIDTEA 194
Y K SH +T ++ Q + ++ G + + IG G+ I+ E
Sbjct: 196 YISAKKKAISHRRDTGWSIV----QEKDRSLLGGQSDPRTIGLTLENDLKKDGIFINNER 251
Query: 195 KTASFEVPAVGVVSQLQL-HNMKVMGRHNYHNAAVAALS-VLGLDIGVDVEALNSTIEIL 252
A E GV L + + ++G HN NAA+AA + +L +D + +
Sbjct: 252 AIAVIE----GVRHDLFMSKQVPLLGGHNIENAAMAATACILSSSRKID---WSMGLASY 304
Query: 253 RTPPHRMQ-IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQES 311
+ PPHR Q IV +D G+++VDDSK TN+ +TCT L + G K V++LGG+ G+
Sbjct: 305 QAPPHRCQFIVEKD--GISYVDDSKGTNVASTCTALRSIPGGK-VVILGGK-----GKGE 356
Query: 312 NGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD 371
N E + ++ R I G I L ++ V +M++AV A R A GD
Sbjct: 357 NYRELALAVKDNCRYAILLGEERFAIADALKEQNVT-DWQMVESMEEAVVKASRRAKRGD 415
Query: 372 AIVLSPGCASFDEFRNFEHRGMVFQELA 399
++LSP C S+D + ++ RG F LA
Sbjct: 416 TVLLSPACTSWDMYGSYRERGDHFSGLA 443
>gi|398961888|ref|ZP_10678977.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM30]
gi|398151825|gb|EJM40362.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM30]
Length = 448
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 117/362 (32%), Positives = 176/362 (48%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALELLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGAKQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNL--AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L AF G++ + K +FE + + + +KV
Sbjct: 221 ---SRPLIGEGQPCWTFGLNKPDFKAF-GLREEDGEKYLAFEFQNL-----MPVRELKVR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN A A LG +G+ +A+ + HR Q + RD+ GV + +DSKAT
Sbjct: 272 GAHN--QANALAALALGHAVGLPFDAMLDALRNFTGLEHRCQWL-RDLDGVGYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D+ G K V++ GG K G E F L +P+ + R VI G
Sbjct: 329 NVGAALAAIEGLGADIDG-KVVLIAGGDGK---GAE---FNDLRDPVAANCRAVILMGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
I + + G ++P ++ DAV R +A GD ++LSP CASFD F+N+E RG
Sbjct: 382 SDKIGEAI---GDAVPLIRATSLVDAVAQCRAVAQPGDVVLLSPACASFDMFKNYEDRGH 438
Query: 394 VF 395
F
Sbjct: 439 QF 440
>gi|227494646|ref|ZP_03924962.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
coleocanis DSM 15436]
gi|226831828|gb|EEH64211.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
coleocanis DSM 15436]
Length = 494
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 112/403 (27%), Positives = 177/403 (43%), Gaps = 63/403 (15%)
Query: 28 VMSELDFAAQV---IPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
V SE++ A Q+ + + IK LA+TGTNGK+T V VG +L G + V GN+G P+
Sbjct: 103 VWSEVELAWQIQHTLGKDIKWLAITGTNGKTTTVGLVGSILEAAGAKYAVVGNVGEPIVT 162
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
K +V VE+SS+Q+E + P +V LN+ DHL+ H +++NY
Sbjct: 163 TVL--------KADVEVLAVELSSFQLETTHT-LSPLAAVCLNVDADHLDWHGSVENYRD 213
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV--P 202
K ++ NT++G + E + G ++ A+ + + P
Sbjct: 214 AKARIYE---NTQVGCVYDVTDRTVENM------------VAGAEVIEGARAIGYTLGSP 258
Query: 203 A---VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL---------------------DI 238
A +G+V +L + V RH+ A + G
Sbjct: 259 APSQIGLVEKLLVDRAFVENRHHQAEAVAEISDIFGFASEHPSIALVKDTLAAIALTRAY 318
Query: 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL 298
GV EA+ + + ++ HR ++ + V W+DDSKATN A L V +
Sbjct: 319 GVSGEAVAAGLRNFKSAKHRRAVIGKTAD-VVWIDDSKATNTHAAKASLAGFPPQSVVWI 377
Query: 299 LGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKD 358
GG K GQE + I+ + R V+ G + + L N IP V +D
Sbjct: 378 AGGDTK---GQELHSLVADIK--DCLRGVVVIGADPTPVVEALQTNAAEIPYVVVDGHED 432
Query: 359 ----AVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
VN A ++ G+ +VL+P CAS+D+F N+ RG +F E
Sbjct: 433 MMFSVVNEAVALSLPGNTVVLAPACASWDQFENYGQRGDLFAE 475
>gi|423281159|ref|ZP_17260070.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis HMW 610]
gi|424665904|ref|ZP_18102940.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis HMW 616]
gi|404574157|gb|EKA78908.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis HMW 616]
gi|404583323|gb|EKA88004.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis HMW 610]
Length = 444
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 111/394 (28%), Positives = 195/394 (49%), Gaps = 53/394 (13%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKEQGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEEEHDYYVIELSSFQLD--NMYKFRADIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA--FPGVKIDTEAKT 196
M+NY K + + T F N ++ I + I A +P I E
Sbjct: 190 MQNYINAKFRITQN--QTSEDAFIFWN---DDPIIKRELDKHGICAHLYPFSAIKEEGSI 244
Query: 197 ASFEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTIEI 251
A E V + + ++ + + G+HN +N+ A +S L G+ E + +
Sbjct: 245 AYVEDHEVVITAPIAFNMEQEQLALTGQHNLYNSLAAGISANLA---GITKENIRRALSD 301
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQES 311
+ HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K
Sbjct: 302 FQGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK------G 353
Query: 312 NGFEKLIEPLNHHRCVITFGYSGVLIWKTLVN-------NGLSIPCFAV-ANMKDAVNHA 363
N + + IE L +C L++ L N + L +P V MKDAV A
Sbjct: 354 NDYTE-IEELVREKC-------SALVYLGLHNEKLHEFFDRLGLPVAEVQTGMKDAVEAA 405
Query: 364 RRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
++A G+ ++LSP CASFD F+++E RG F++
Sbjct: 406 YKLAKKGETVLLSPCCASFDLFKSYEDRGDQFKK 439
>gi|350265830|ref|YP_004877137.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus subtilis
subsp. spizizenii TU-B-10]
gi|349598717|gb|AEP86505.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus subtilis
subsp. spizizenii TU-B-10]
Length = 451
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 111/374 (29%), Positives = 181/374 (48%), Gaps = 26/374 (6%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V +E++ A + + K + +TG+NGK+T T + +ML +A + GN+G
Sbjct: 95 KRGIPVWTEIELAYYLT--NAKFIGITGSNGKTTTTTLIYEMLKADSQKALIAGNIGTVA 152
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
SE A+H + V E+SS+Q+ + F P +S++LN+ HL+ H T +NY
Sbjct: 153 SEVAYHA-------DGDEWIVTELSSFQL-MGTHAFRPEISLILNVFDAHLDYHHTRENY 204
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K ++ H V + ++ NQ ++ A I F K + +
Sbjct: 205 EKAKQKVYLHQVASDKAIV---NQDDETVVRLAEAGKAEIIPFSVSKTLEQGAYVKDGMI 261
Query: 203 AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
+ + L + + G HN N +AA++V+ GV EA+ + HR+Q V
Sbjct: 262 MFSGEAIIPLEEVVLPGAHNLENI-LAAIAVVKT-AGVSSEAVKKVLTSFTGVKHRLQYV 319
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322
++ + +DSKATN+ AT L K VILL G NGF+ L +
Sbjct: 320 -TTVKDRKFYNDSKATNILATSKALSAFD--KPVILLAGGL-----DRGNGFDDLKPYMK 371
Query: 323 HHRCVITFGYSGVLIWKTLVNNGLSIP-CFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
H + V+TFG + + K + N + I V N++ AV+ A ++ GD I+LSP CAS
Sbjct: 372 HVKAVLTFGQTAPKLEK--LGNEMGIQHVKRVDNVEQAVSAAFALSNEGDVILLSPACAS 429
Query: 382 FDEFRNFEHRGMVF 395
+D+F+ FE RG +F
Sbjct: 430 WDQFKTFEERGDMF 443
>gi|307704498|ref|ZP_07641406.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
mitis SK597]
gi|307621911|gb|EFO00940.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
mitis SK597]
Length = 450
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 184/374 (49%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LTKGIPVLTEVELAYLI--SEAPIVGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A S K V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTA----SDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKELASK--TQATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V +I+GV + +DSK+TN+ AT L K +++ GG + N F++L+ +
Sbjct: 317 VD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G+S ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVS--YVDATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|291616270|ref|YP_003519012.1| MurD [Pantoea ananatis LMG 20103]
gi|291151300|gb|ADD75884.1| MurD [Pantoea ananatis LMG 20103]
Length = 438
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 119/381 (31%), Positives = 176/381 (46%), Gaps = 79/381 (20%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + VGGN+G P AL K Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGLP---------ALSLLKAPAQLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E + + +LN+T DH++R+ M+ Y K ++ + +VN G
Sbjct: 158 ELSSFQLETTHS-LKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENAQVCVVNADDG 216
Query: 160 L---------------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+ + G+ HLN+ + W+ A G K+
Sbjct: 217 MTMPVRGADARCVSFGIDIGDYHLNK-----QQGSIWLRA-KGEKV-------------- 256
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSV--LGLDIGVDVEALNSTIEILRTPPHRMQIV 262
L M ++G+HNY NA A +GL + AL + + PHR Q+V
Sbjct: 257 -----LNTDEMTLVGQHNYTNALAALALADAVGLPRSTSLSALAAYSGL----PHRFQLV 307
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKVLNGQESNGFEKLIEPL 321
H+ +GV W++DSKATN+ +T L L+ + + +LLGG K S F L L
Sbjct: 308 HQS-RGVRWINDSKATNVGSTEAALKGLQVNGTLWLLLGGDGK------SADFSPLATYL 360
Query: 322 NHHRC-VITFGYSGVLIWKTLVNNGLSIPCFAVAN--MKDAVNHARRMATNGDAIVLSPG 378
R + FG G + P AV ++ A+ R D ++LSP
Sbjct: 361 QGDRIRLYCFGRDGDALAALR-------PDVAVRTDTLQQAMEQIARQVQPDDMVLLSPA 413
Query: 379 CASFDEFRNFEHRGMVFQELA 399
CAS D+FRNFE RG VF +LA
Sbjct: 414 CASLDQFRNFEQRGDVFAQLA 434
>gi|149010691|ref|ZP_01832062.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP19-BS75]
gi|418188918|ref|ZP_12825433.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47373]
gi|419468563|ref|ZP_14008434.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA06083]
gi|147765172|gb|EDK72101.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP19-BS75]
gi|353856060|gb|EHE36029.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47373]
gi|379546666|gb|EHZ11804.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA06083]
Length = 450
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 183/374 (48%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVAQTA----SDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGLFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|385263157|ref|ZP_10041249.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
sp. SK643]
gi|385188471|gb|EIF35956.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
sp. SK643]
Length = 450
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 185/377 (49%), Gaps = 31/377 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIVGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + V+E+SS+Q+ + + F P ++V+ NL P H++ H T +
Sbjct: 151 ASQVA-------QTATDKDTLVMELSSFQL-MGIQDFHPEIAVITNLMPTHIDYHGTFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKTASFE 200
Y K ++ +M T +L F NQ L + + A + F + K+D A E
Sbjct: 203 YVDAKWNIQKNMTATDFLVLNF-NQDLAKELATK--TEAEVVPFSTLEKVD----GAYLE 255
Query: 201 VPAVGVVSQLQL--HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
+ +L + + V G HN N A+A + V L GVD + + T+ HR
Sbjct: 256 DGQLYFRGELVMAADEIGVPGSHNVEN-ALATIVVSKLR-GVDNQTIKETLAAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q V +I+GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQFVD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
+ + + ++ G S + + G+S ++ DA A +AT GD ++LSP
Sbjct: 367 QDITGLKKMVILGQSAERVKRAADKAGVS--YLDALDIADATRKAYELATEGDVVLLSPA 424
Query: 379 CASFDEFRNFEHRGMVF 395
AS+D + NFE RG +F
Sbjct: 425 NASWDMYANFEVRGDLF 441
>gi|332292531|ref|YP_004431140.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Krokinobacter sp.
4H-3-7-5]
gi|332170617|gb|AEE19872.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Krokinobacter sp.
4H-3-7-5]
Length = 445
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 113/397 (28%), Positives = 195/397 (49%), Gaps = 45/397 (11%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + LL+ G V+SE++FA+Q +I + +TG+NGK+T G +L GI
Sbjct: 76 KAPIVQRLLEKGVAVISEIEFASQYTDATI--VGITGSNGKTTTTMLTGFILEQAGINLG 133
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDH 132
V GN+G+ ++ ++ + V+E+SS+Q++ I + F P ++VVLN+TPDH
Sbjct: 134 VAGNIGDSYAKMV--------AQKEIDTYVLEISSFQLDGIAD--FAPHIAVVLNVTPDH 183
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID 191
L+R+ +NY +K + + T + + + +K H + +D
Sbjct: 184 LDRYDYKFENYIASKFRIAMNQKETDYLIYDADDPVSVDWLKKHPVKSKLLP----FSLD 239
Query: 192 TEAKTASFEVPAVGVVSQLQ-------LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
E + +F + + QL +N+ + G+HN NA +AA +V L + +
Sbjct: 240 KEFENGAF-IKDNNLTVQLNNNTFTMATNNLALKGQHNKKNA-MAASTVANL-LNIRKAT 296
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
+ ++E + HR++ V + I V +++DSKATN+ AT L D V ++GG K
Sbjct: 297 IRESLEGFQGVEHRLEQVLK-INNVQYINDSKATNVNATFYAL-DSMSEPTVWIVGGVDK 354
Query: 305 VLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLI---WKTLVNNGLSIPCFAVANMKDAV 360
N + L +N + +I G + + +V+ + P M +AV
Sbjct: 355 ------GNNYRDLYPLVNEKVKAIICLGVDNAKLMSHFGNMVDIIVETPS-----MSEAV 403
Query: 361 NHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
A +++ GD ++LSP CASFD F N+E RG F+E
Sbjct: 404 KIAYKVSERGDNVLLSPACASFDLFENYEDRGRQFKE 440
>gi|217971631|ref|YP_002356382.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
baltica OS223]
gi|217496766|gb|ACK44959.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
OS223]
Length = 439
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 117/385 (30%), Positives = 178/385 (46%), Gaps = 53/385 (13%)
Query: 25 GKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
G V+ +++ FA ++ R ++ +TG+NGKSTV T VG+M GI VGGN+G P
Sbjct: 90 GIEVIGDVELFAREIADRKPCVIGITGSNGKSTVTTLVGEMAREAGIAVAVGGNIGVP-- 147
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
AL + V+E+SS+Q+E + C V+ LN++ DH++R+ + Y
Sbjct: 148 -------ALDLLHENADLFVLELSSFQLETTHSLKC-VVATCLNISEDHMDRYSDIAAYR 199
Query: 144 LTKCHLFSHM------VNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
K L+ + KL + P E + + F LA A D++
Sbjct: 200 EAKLRLYKQSRAVLFNRDDKLTVPP-------EPMNQNSFGLAAPEADEWGISDSKIYHG 252
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTP 255
S E+ + + + ++G HN+ N AA+A + V +GVD + +
Sbjct: 253 SSEI--------MPITEVSLIGSHNHANLLAAMALVDV----VGVDKQIMAKVARSFTGL 300
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKVLNGQESNG 313
HR ++V GVT+V+DSKATN+ AT L L H +++ GG K +
Sbjct: 301 SHRCEVVGIK-NGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDGKGAD------ 353
Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
F+ L L +IT G G I L V M AV A +AT+GD +
Sbjct: 354 FKPLGVALAKVTHLITLGRDGKKIA------ALKDGAVRVETMAAAVTKAAELATSGDIV 407
Query: 374 VLSPGCASFDEFRNFEHRGMVFQEL 398
+LSP CAS D + NF RG F+ L
Sbjct: 408 LLSPACASLDMYSNFMARGDDFRNL 432
>gi|261855069|ref|YP_003262352.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Halothiobacillus
neapolitanus c2]
gi|261835538|gb|ACX95305.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Halothiobacillus
neapolitanus c2]
Length = 471
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 118/385 (30%), Positives = 182/385 (47%), Gaps = 40/385 (10%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V ++D A + ++ +TG+NGKSTV VG++LN G+ A VGGN G P
Sbjct: 91 VRGDIDLALHA--SDVPVVLITGSNGKSTVTALVGELLNAAGVSAVVGGNFGTP------ 142
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPN-----KYFCPTVSVVLNLTPDHLERHKTMKNY 142
AL V V+EVSS+Q+E + P + VLN++ DHL+RH T+ +Y
Sbjct: 143 ---ALDLLTTDADVLVLEVSSFQLESTDFSGLAPAQMPRAATVLNISQDHLDRHGTLAHY 199
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG-AFPGVKIDTEAKTASFEV 201
A K + + + +L + + + ++ W G A P D T + E
Sbjct: 200 AAIK---ETALHQARRAVLNRDDPMVAAMAERASGDVIWFGTAMPTQPSDFGLMTIAGES 256
Query: 202 ------PAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
+S L + + + GRHN N AA+A + + D+ ++ + L + +
Sbjct: 257 WLIQAQANATALSILPVQALGLTGRHNQMNVLAALALIQAVVPDVALNDDRLLNVLRQFT 316
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
PHR Q V I GV ++DDSKATN+ A ++ + V++ GGQ K GQ+
Sbjct: 317 GLPHRAQSVGV-INGVRFIDDSKATNVGAAVAAILGMPA-PLVLIAGGQGK---GQD--- 368
Query: 314 FEKLIEPLNHHRC--VITFGYSGVLIWKTLVNN-GLSIPCFAVANMKDAVNHARRMATNG 370
F L E L RC +I G +I + L N G + P V +M +AV A +A
Sbjct: 369 FAPLAESL-VGRCAGLILMGQDQAVIAEALQNEPGATWPVRRVHSMIEAVQAAADIAPPQ 427
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVF 395
++L+P CAS D F ++ RG F
Sbjct: 428 STVLLAPACASLDMFVSYVDRGNQF 452
>gi|148994421|ref|ZP_01823644.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP9-BS68]
gi|168488368|ref|ZP_02712567.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SP195]
gi|417678647|ref|ZP_12328045.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17570]
gi|418125303|ref|ZP_12762219.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44511]
gi|418191128|ref|ZP_12827633.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47388]
gi|418213866|ref|ZP_12840601.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA54644]
gi|418233890|ref|ZP_12860470.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA08780]
gi|419484436|ref|ZP_14024212.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA43257]
gi|419507765|ref|ZP_14047419.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA49542]
gi|421219884|ref|ZP_15676739.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070425]
gi|421222215|ref|ZP_15679009.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070531]
gi|421278464|ref|ZP_15729274.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17301]
gi|421293777|ref|ZP_15744501.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA56113]
gi|421300550|ref|ZP_15751221.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA19998]
gi|147927257|gb|EDK78291.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP9-BS68]
gi|183573146|gb|EDT93674.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SP195]
gi|332074492|gb|EGI84968.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17570]
gi|353799347|gb|EHD79666.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44511]
gi|353858727|gb|EHE38687.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47388]
gi|353871149|gb|EHE51020.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA54644]
gi|353889329|gb|EHE69100.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA08780]
gi|379583947|gb|EHZ48824.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA43257]
gi|379612610|gb|EHZ77327.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA49542]
gi|395589539|gb|EJG49857.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070531]
gi|395589959|gb|EJG50274.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070425]
gi|395881836|gb|EJG92884.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17301]
gi|395895109|gb|EJH06085.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA56113]
gi|395899974|gb|EJH10913.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA19998]
Length = 450
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 182/374 (48%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVAQTA----SDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + AF ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVAFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L VD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-DVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G + ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAG--VAYVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|270292242|ref|ZP_06198456.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
sp. M143]
gi|270279288|gb|EFA25131.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
sp. M143]
Length = 450
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 105/374 (28%), Positives = 183/374 (48%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIVGITGSNGKTTTTTMIGEVLTAAGQRGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKELATR--TQATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + V G HN N A+A ++V L G+D + + T+ HR+Q
Sbjct: 260 YFRGEVI-MAADEIGVPGSHNVEN-ALATIAVAKLR-GIDNQIIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V +IQGV + +DSK+TN+ AT L K +++ GG + N F++L+ +
Sbjct: 317 VD-EIQGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKRMVILGQSAERVKRAAEKAGVA--YVDATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|397685941|ref|YP_006523260.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
stutzeri DSM 10701]
gi|395807497|gb|AFN76902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
stutzeri DSM 10701]
Length = 447
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 113/362 (31%), Positives = 169/362 (46%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+N KSTV T VG+M G + VGGNLG P AL ++ V+
Sbjct: 110 IIAITGSNAKSTVTTLVGEMAQAAGRKVAVGGNLGTP---------ALDLLNDDVELYVL 160
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E + V+ LN++ DH++R+ + Y K +F +
Sbjct: 161 ELSSFQLET-TEQLNAEVATCLNVSEDHMDRYAGLPAYHQAKHRIFRGARQVVVNR---- 215
Query: 165 NQHLNEAIKGHRFNLAWIG----AFPGVKIDTE--AKTASFEVPAVGVVSQLQLHNMKVM 218
+ L+ + G + G F G + E K +F+ A+ + +K+
Sbjct: 216 DDRLSRPLVGEEVPVWSFGLGKPDFKGFGLIEENGEKHLAFQFEAL-----MPARELKMR 270
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ A+ T+ PHR Q V + GV++ DDSKAT
Sbjct: 271 GAHNQSNALAALAL--GHAVGLPFAAMLQTLRTFAGLPHRCQWVG-ERAGVSYYDDSKAT 327
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D+ G K V++ GG K + F L EP+ H R VI G
Sbjct: 328 NVGAALAAIGGLGADIDG-KLVLIAGGDGKGAD------FSALREPIGRHCREVILLGRD 380
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
+ TL ++ V +++AV A A GDA++LSP CAS D F+NFE RG
Sbjct: 381 AGRLACTLQG---AVALKQVQGLEEAVQRAAECALPGDAVLLSPACASLDMFKNFEERGR 437
Query: 394 VF 395
+F
Sbjct: 438 LF 439
>gi|108763559|ref|YP_633745.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Myxococcus xanthus
DK 1622]
gi|118595667|sp|Q1D0S8.1|MURD_MYXXD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|108467439|gb|ABF92624.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Myxococcus xanthus
DK 1622]
Length = 455
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 120/390 (30%), Positives = 179/390 (45%), Gaps = 46/390 (11%)
Query: 24 SGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
+G V E++ A +++ + + +TGTNGKST G + FVGGNLG P S
Sbjct: 93 AGVAVWGEVELAGRML-SGVPLFGITGTNGKSTTTALTGTLFASGDKRTFVGGNLGRPFS 151
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
EAA S + VVE+SSYQ+E + P + +LNLTPDH++R+ + Y
Sbjct: 152 EAAM-------SPGDWDALVVELSSYQLE-GIRTLRPRGAAILNLTPDHIDRYPSHAAYG 203
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQH------LNEAIKGHRFNLAWIG-------AFPGVKI 190
K +F N + G N L A K + + G A G+ +
Sbjct: 204 EAKARIFQ---NQQAGDFVVVNADDADVLGLARAAKAPVYGFSLTGKPVADAPALAGLAV 260
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTI 249
+ F + +G L N + G HN NA AAL LG GV A+ + +
Sbjct: 261 ---VEPGGFRLAFLG--EHYTLTNRALRGAHNAQNAMAAALLARLG---GVASGAVQAGL 312
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
+ PHR++ V R + GV WV+DSKATN+++ L ++ GG+ K
Sbjct: 313 DGYPGLPHRLESV-RVLDGVEWVNDSKATNVDSVLVALRAFS-QGVWLIAGGKGK----- 365
Query: 310 ESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMAT 368
+ ++E + V+T G + + C +A+ AV AR +A
Sbjct: 366 -GAPYAPMVEAGQGKVKGVLTIGDDADTLARAYAGAAQVHACGTLAH---AVARARELAE 421
Query: 369 NGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
GD ++LSP CASFD+F+NFE RG F+ L
Sbjct: 422 RGDTVLLSPACASFDQFKNFEDRGDSFKRL 451
>gi|444414617|ref|ZP_21210870.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0199]
gi|444281479|gb|ELU86796.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0199]
Length = 450
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 184/374 (49%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + + K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIATDK---NTLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMAAADFLVLNF-NQDLAKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|343085408|ref|YP_004774703.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cyclobacterium
marinum DSM 745]
gi|342353942|gb|AEL26472.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cyclobacterium
marinum DSM 745]
Length = 447
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 113/386 (29%), Positives = 192/386 (49%), Gaps = 37/386 (9%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L+++G V+ EL+FA + K++A+TGTNGK+T + ++ G++ +GGN+G
Sbjct: 82 LVEAGIPVIDELEFAYRF--SKGKVIAITGTNGKTTTSLLIYHLMKRAGMDVGLGGNVG- 138
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQME--IPNKYFCPTVSVVLNLTPDHLER-HK 137
AL + V+EVSS+Q+E I K P+++V+LN++PDHL+R H
Sbjct: 139 -------QSWALQLVEKDHSWWVLEVSSFQIEGFIDLK---PSIAVLLNISPDHLDRYHY 188
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFN--LAWIG--AFPGVKIDTE 193
+++ YA K L M + + +++EA+K + N L IG G K E
Sbjct: 189 SLEEYAAAKIKLTERMNAQDHFVFFEPDSNISEAMKSQKGNPTLVPIGLENLNGTKGYIE 248
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
+ + G+ + M + G HN+ N+ A ++V+ G D+ + ++
Sbjct: 249 DNKLNLAIN--GLNWSWPTNEMVLKGEHNFINSLAATMTVVL--AGADISKIGPALKDFV 304
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
HRM+ V I GV +++DSK TN++AT L + + + GG K N
Sbjct: 305 NAAHRMEQVAT-INGVKFINDSKGTNVDATAFALGAFQ-EPLIWIAGGVDK------GND 356
Query: 314 FEKLIEP-LNHHRCVITFGYSGVLIWKTLVNNGLSIPC-FAVANMKDAVNHARRMATNGD 371
++ L + ++H + +I G K + IPC ++++AV + + GD
Sbjct: 357 YKLLDDKVIDHVKLLICLGKDNE---KLKIAFSGKIPCILTTEDIREAVQWSLENGSEGD 413
Query: 372 AIVLSPGCASFDEFRNFEHRGMVFQE 397
+LSP CASFD F+N+E RG F+E
Sbjct: 414 VALLSPACASFDLFKNYEDRGDQFKE 439
>gi|300774444|ref|ZP_07084307.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Chryseobacterium
gleum ATCC 35910]
gi|300506259|gb|EFK37394.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Chryseobacterium
gleum ATCC 35910]
Length = 445
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 108/396 (27%), Positives = 197/396 (49%), Gaps = 34/396 (8%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA ++ + + G R+ SE++FA++ KI+A+TG+NGK+T + + +L + G+
Sbjct: 74 KADIISKIHEKGIRLSSEIEFASEFT--DAKIIAITGSNGKTTTTSLIYYILKNDGLNVG 131
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQM-EIPNKYFCPTVSVVLNLTPDH 132
+GGN+G + A + + V+EVSS+Q+ +I N F P +S++LNL+ DH
Sbjct: 132 LGGNIG--------YSFAKQVADENHEYYVLEVSSFQLDDIQN--FRPYISLLLNLSQDH 181
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID 191
L+++ + YAL K + + N + ++ ++ I K+
Sbjct: 182 LDQYNYNYEEYALAKFRIAENQENDNFFIYNKDDEMSKNLLEKLEIKAKMIPFSTKEKLQ 241
Query: 192 TEAKTASFEVPAVGVVSQLQLHNMKV-----MGRHNYHNAAVAALSVLGLDIGVDVEALN 246
E+ VV +MKV +G HN N+ A S+ G + ++ E++
Sbjct: 242 EGGFVNEDEI----VVKMKDEFSMKVDELSLLGNHNVANSLAA--SIAGKILEINNESIR 295
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVL 306
++ + HR++ V +I GV +++DSKATN+ AT L +K V ++GG K
Sbjct: 296 HSLMTFQAVEHRLEFV-TEIDGVKYINDSKATNVNATYYALESMKT-PTVWIVGGLDK-- 351
Query: 307 NGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRM 366
G + E L++ + ++ G I + I + ++M++AV ++ +
Sbjct: 352 -GNDYTEIEDLVK--RKVKAIVCLGIDNKKIIDFFKDKKEFI--YDTSSMEEAVRISKSL 406
Query: 367 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFSA 402
A GD ++LSP CASFD F+++E RG F++ +A
Sbjct: 407 AKKGDTVLLSPCCASFDLFKSYEDRGRQFKQQVLNA 442
>gi|71277817|ref|YP_271115.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Colwellia
psychrerythraea 34H]
gi|81174947|sp|Q47VQ7.1|MURD_COLP3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|71143557|gb|AAZ24030.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Colwellia
psychrerythraea 34H]
Length = 471
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 115/365 (31%), Positives = 184/365 (50%), Gaps = 37/365 (10%)
Query: 43 IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ-- 100
+K+LAVTG+NGKSTVV+ + + +G+ A + GN+G P+ H + +S+ Q
Sbjct: 120 MKMLAVTGSNGKSTVVSLLASLAKAIGVNAALAGNIGEPILN-LLHRENVYNSQLANQPD 178
Query: 101 VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160
+ +VE+SS+Q+E + S VLNL+ DHL+RHKT+ NY K ++ K+ +
Sbjct: 179 IVIVELSSFQLETLSSMHAIAAS-VLNLSDDHLDRHKTLANYQAIKQSIYPQ---AKIAV 234
Query: 161 LPFGNQHLNEAIKGHR-----FNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM 215
+ +Q N + N F ID + V G + + + +
Sbjct: 235 VSREDQASNTLVAAQEIISFGLNKPEQDCFGLQAIDNKM------VMMFGEQALISIDEL 288
Query: 216 KVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDS 275
+ G HN N +AAL+ LG G + A+ + HR Q V + + W++DS
Sbjct: 289 PLAGMHNALN-YMAALA-LGYSAGWSLSAMTENLAGFMGLAHRCQRVASE-DYIQWINDS 345
Query: 276 KATNLEAT---CTGLM-DLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITF 330
KATN+ AT TGL+ L G +IL+ G +G+ ++ F L LN +IT
Sbjct: 346 KATNVGATLAAITGLVPTLTGQNKLILIAGG----DGKGAD-FSALTTILNCDVNQLITL 400
Query: 331 GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEH 390
G G I +LV++ + V +++AV A+++A GD ++LSP CAS D F+N++
Sbjct: 401 GKDGAEI-ASLVSDAIQ-----VDTLREAVEQAKQIAKPGDMVLLSPACASIDMFKNYQV 454
Query: 391 RGMVF 395
RG F
Sbjct: 455 RGEQF 459
>gi|313885109|ref|ZP_07818861.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Eremococcus
coleocola ACS-139-V-Col8]
gi|312619800|gb|EFR31237.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Eremococcus
coleocola ACS-139-V-Col8]
Length = 457
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 100/365 (27%), Positives = 180/365 (49%), Gaps = 44/365 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGK+T + ++L G +A + GN+G P+ + + + V+
Sbjct: 114 MIAITGSNGKTTTTALINEIL---GEKAILAGNIGIPI----LSVVGETQADKRL---VM 163
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q++ +F P + V+ N+ P HL+ H +M+ Y K + +++ + +
Sbjct: 164 EISSFQLQ-GTSFFKPKIGVITNIYPTHLDYHGSMEAYIAAKLKIAANLDEQDFLVYNYD 222
Query: 165 NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ-----------LQLH 213
+ L EA K + +K+ + E+ A G+ Q L L
Sbjct: 223 QEILQEAAKSIK----------AIKLPFSRTQVTPELVAEGLYLQDGQVIYHNQPILSLD 272
Query: 214 NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
++K+ G HN N +AAL+V ++ VD+ + +TIE + PHR++ V +G + +
Sbjct: 273 SIKIPGDHNIENV-LAALAVAVIE-KVDLPQVKATIEAYKGMPHRIEHVAS-FKGREFYN 329
Query: 274 DSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYS 333
DSKATN+ AT T L ++ +I +GG N F+ LI L H + +G +
Sbjct: 330 DSKATNMTATITALASF--NQDLIYIGG-----GLDRGNEFDDLIPHLGHIKQAFLYGET 382
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
+ K + IP N+++A + A + G ++ SP CAS+D+F++FE RG
Sbjct: 383 KEKMAKAF--EKVDIPFVLADNLREASHLAYQATQAGQVLLFSPACASWDQFKSFEIRGD 440
Query: 394 VFQEL 398
F++L
Sbjct: 441 QFKDL 445
>gi|414158129|ref|ZP_11414423.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus sp.
F0441]
gi|410870674|gb|EKS18631.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus sp.
F0441]
Length = 450
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 108/377 (28%), Positives = 183/377 (48%), Gaps = 31/377 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + SI + +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLISEASI--IGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEA 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ ++M +L F NQ L + + + + K+D E
Sbjct: 203 YVAAKWNIQNNMTAADFLVLNF-NQDLAKEL-ATKTQATVVPFSTKEKVDGAYLENGQLY 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F V S++ V G HN N A+A ++V L GVD + + T+ HR
Sbjct: 261 FRGEVVMTASEI-----GVPGSHNVEN-ALATIAVAKLR-GVDNQIIKETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q V +I+GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQFVD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
+ + ++ G S I + G + ++ DA A +AT GD ++LSP
Sbjct: 367 PDITGLKKMVILGQSAERIKRAAEKAG--VAYVDAIDIADATRKAYELATEGDVVLLSPA 424
Query: 379 CASFDEFRNFEHRGMVF 395
AS+D + NFE RG +F
Sbjct: 425 NASWDMYANFEVRGDLF 441
>gi|399543812|ref|YP_006557120.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinobacter sp.
BSs20148]
gi|399159144|gb|AFP29707.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinobacter sp.
BSs20148]
Length = 448
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 111/398 (27%), Positives = 178/398 (44%), Gaps = 74/398 (18%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
R+ ++D A+ I+A+TG+NGK+TV T V M G VGGN+G P
Sbjct: 95 RIRGDIDLFAEAA--DAPIIAITGSNGKTTVTTLVADMARDAGYLVAVGGNIGTP----- 147
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
AL ++ V+E+SS+Q+E ++ + VLN++ DH++R+ Y K
Sbjct: 148 ----ALDLLNTGARLYVLELSSFQLETTDE-LKALAATVLNISDDHMDRYPDKMAYYQAK 202
Query: 147 CHLF---------------SHMVNTKLGLLPFGNQHLN--------EAIKGHRFNLAWIG 183
+F + M T L + FG +N +++ GH + + W
Sbjct: 203 QRIFRGCQYAIVNLDDALSTPMARTTLRFICFGMNRVNPDTFSTRDDSVSGHPW-VTW-- 259
Query: 184 AFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVE 243
G+ + ++ + ++GRHN N +AAL LG G+ ++
Sbjct: 260 ---------------------GLDNLIRADELGLIGRHNLSNV-MAALG-LGKAAGLPMD 296
Query: 244 ALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGG 301
++ +T PHR + + R + GV +++DSK TN+ AT L L K V++ GG
Sbjct: 297 SMLATARAFHGLPHRCESL-RLVNGVEYINDSKGTNVGATVAALDSLAPAAGKIVLIAGG 355
Query: 302 QAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAV 360
K + F L +P H R V+ G + K L ++ DAV
Sbjct: 356 DGKGAD------FSPLADPARRHCRAVVLIGRDAAQLQKVLAQG---TATHIENSLADAV 406
Query: 361 NHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
A R+A GD ++LSP CAS D FR++ RG F+ L
Sbjct: 407 ASAARLAQPGDRVLLSPACASLDMFRDYIDRGERFRTL 444
>gi|219681589|ref|YP_002467975.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
aphidicola str. 5A (Acyrthosiphon pisum)]
gi|219682147|ref|YP_002468531.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
aphidicola str. Tuc7 (Acyrthosiphon pisum)]
gi|257471275|ref|ZP_05635274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
aphidicola str. LSR1 (Acyrthosiphon pisum)]
gi|384226027|ref|YP_005617190.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
aphidicola str. TLW03 (Acyrthosiphon pisum)]
gi|384226562|ref|YP_005618313.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
aphidicola str. JF98 (Acyrthosiphon pisum)]
gi|384227083|ref|YP_005618833.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
aphidicola str. LL01 (Acyrthosiphon pisum)]
gi|414562578|ref|YP_005617769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
aphidicola str. JF99 (Acyrthosiphon pisum)]
gi|254766040|sp|B8D916.1|MURD_BUCA5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|254766041|sp|B8D7C1.1|MURD_BUCAT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|219621880|gb|ACL30036.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
str. Tuc7 (Acyrthosiphon pisum)]
gi|219624432|gb|ACL30587.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
str. 5A (Acyrthosiphon pisum)]
gi|311085959|gb|ADP66041.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
aphidicola str. LL01 (Acyrthosiphon pisum)]
gi|311086534|gb|ADP66615.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
aphidicola str. TLW03 (Acyrthosiphon pisum)]
gi|311087114|gb|ADP67194.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
aphidicola str. JF99 (Acyrthosiphon pisum)]
gi|311087659|gb|ADP67738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
aphidicola str. JF98 (Acyrthosiphon pisum)]
Length = 440
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 108/386 (27%), Positives = 198/386 (51%), Gaps = 52/386 (13%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++S+++ ++ + + I+++TGTNGKSTV T + ++ G +AF+GGN+G P+ E
Sbjct: 90 GIEIISDIELFSREV--TCPIISITGTNGKSTVATMIEKIAKKSGYKAFLGGNIGVPVLE 147
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHKT-MKNY 142
+ + ++E+SS+Q+E N + ++V+LN++ DH+ R+ + Y
Sbjct: 148 IL---------DKEADLYIIELSSFQLE--NTFNLKSKIAVILNISEDHINRYPNGFQQY 196
Query: 143 ALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
TK +++ ++N+ N + +++ H N WI +F + D + S
Sbjct: 197 KNTKLSVYNQAEICIINS--------NDKIEKSLI-HSKNKKWI-SFGTNRSDYRICSKS 246
Query: 199 FEVPAVGVVSQLQLHNMKVM--GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT-- 254
+ P + ++ L+ +++ G HNY+N V+ L + + N I +L++
Sbjct: 247 ND-PILFFKNKKILNTSEILLYGYHNYNNILVS----LAISDAMQFPR-NDAINVLKSFS 300
Query: 255 -PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKVLNGQESN 312
PHR QI+ + +GV W++DSK+TN+ +T L +K + +LLGG +K N N
Sbjct: 301 NLPHRFQIIKNE-KGVRWINDSKSTNVNSTQVALNSIKTTGTIRLLLGGDSKSAN---FN 356
Query: 313 GFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 372
+ + L + FG G+ + K + V N+K AV + +GD
Sbjct: 357 ILKNIFRTLKIK--IYCFGRDGIKLSKICEKKSI-----YVENLKKAVILISKQVKSGDT 409
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQEL 398
++LSPGC+S D+F NFE RG +F +L
Sbjct: 410 VLLSPGCSSLDQFSNFEERGNLFIKL 435
>gi|386080668|ref|YP_005994193.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Pantoea
ananatis PA13]
gi|354989849|gb|AER33973.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Pantoea
ananatis PA13]
Length = 438
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 119/381 (31%), Positives = 176/381 (46%), Gaps = 79/381 (20%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + VGGN+G P AL K Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGLP---------ALSLLKAPAQLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E + + +LN+T DH++R+ M+ Y K ++ + +VN G
Sbjct: 158 ELSSFQLETTHS-LKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENAQVCVVNADDG 216
Query: 160 L---------------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+ + G+ HLN+ + W+ A G K+
Sbjct: 217 MTMPVRGADARCVSFGIDIGDYHLNK-----QQGSIWLRA-KGEKV-------------- 256
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSV--LGLDIGVDVEALNSTIEILRTPPHRMQIV 262
L M ++G+HNY NA A +GL + AL + + PHR Q+V
Sbjct: 257 -----LNTDEMTLVGQHNYTNALAALALADAVGLPRSTSLSALAAYSGL----PHRFQLV 307
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKVLNGQESNGFEKLIEPL 321
H+ +GV W++DSKATN+ +T L L+ + + +LLGG K S F L L
Sbjct: 308 HQS-RGVRWINDSKATNVGSTEAALKGLQVNGTLWLLLGGDGK------SADFSPLATYL 360
Query: 322 NHHRC-VITFGYSGVLIWKTLVNNGLSIPCFAVAN--MKDAVNHARRMATNGDAIVLSPG 378
R + FG G + P AV ++ A+ R D ++LSP
Sbjct: 361 QGDRIRLFCFGRDGDALAALR-------PDVAVRTDTLQQAMEQIARQVQPDDMVLLSPA 413
Query: 379 CASFDEFRNFEHRGMVFQELA 399
CAS D+FRNFE RG VF +LA
Sbjct: 414 CASLDQFRNFEQRGDVFAQLA 434
>gi|336417333|ref|ZP_08597657.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides ovatus
3_8_47FAA]
gi|335936079|gb|EGM98019.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides ovatus
3_8_47FAA]
Length = 444
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 109/390 (27%), Positives = 190/390 (48%), Gaps = 45/390 (11%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKAQGTPVISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEDYHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHL-NEAIKGHRFNLAWI---GAFPGVKI 190
M+NY K + + + P Q L +K H + A + GA V+
Sbjct: 190 MQNYIDAKFRITQNQTPDDAFIFWNDDPIIRQELAKHGLKAHLYPFAAVKEDGAIAYVE- 248
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTI 249
D E K + ++ + + G+HN +N+ A +S L G+ E + +
Sbjct: 249 DHEVKITE------PIAFNMEQEELALTGQHNLYNSLAAGISANLA---GIAKENIRKAL 299
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
+ HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K
Sbjct: 300 SDFKGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK----- 352
Query: 310 ESNGFEKLIEPLNHHRC--VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA 367
N + + IE L +C ++ G + + GL + MKDAV A +A
Sbjct: 353 -GNDYTE-IEDLVREKCSALVYLGLHNEKLHEFFDRFGLPVADVQTG-MKDAVEAAYELA 409
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
G+ ++LSP CASFD F+++E RG F+E
Sbjct: 410 KKGETVLLSPCCASFDLFKSYEDRGDQFKE 439
>gi|365538540|ref|ZP_09363715.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
ordalii ATCC 33509]
Length = 439
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 113/368 (30%), Positives = 177/368 (48%), Gaps = 55/368 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G + G++ VGGN+G P AL + + + V+
Sbjct: 110 VIAITGSNGKSTVTDLTGVLAKAAGVKVAVGGNIGVP---------ALDLLQQEADLYVL 160
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E + + + LNLT DH++R+ M++Y K +F + +VN
Sbjct: 161 ELSSFQLETTSSLKLVSAAF-LNLTEDHMDRYDGMESYRQAKLRIFKYAQAAVVNAD--- 216
Query: 161 LPFGNQHLNEAIKGH--RFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+Q + GH RF++ + ID ++ + P L ++++
Sbjct: 217 ---DSQTEPPSFSGHIARFSVEHDADYCTQMIDGKSFLVAKGTPL------LASEELRLV 267
Query: 219 GRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
GRHN N +A L + G+D ++AL S R HR Q+V D GV WV+DSK
Sbjct: 268 GRHNSANVLTVLALLDLAGVDYSSALDALKS----YRGLTHRCQVV-ADNHGVKWVNDSK 322
Query: 277 ATNLEATCTGLMDLKGHKCVILL-GGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGV 335
ATN+ +T L L + LL GG K G + + +++ LN C FG
Sbjct: 323 ATNVASTQAALSGLNCQGTLYLLVGGVGK---GADFSLLAPILKTLNVKLCC--FG---- 373
Query: 336 LIWKTLVNNGLSIPCFAVA----NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 391
V+ G +P A +M++ + + GD ++LSP CASFD+F+NF R
Sbjct: 374 ------VDGGQFMPLHPSAQFYSSMEEIIVSIKPQLRRGDMVMLSPACASFDQFKNFMAR 427
Query: 392 GMVFQELA 399
G F ELA
Sbjct: 428 GDAFAELA 435
>gi|402839214|ref|ZP_10887707.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Eubacteriaceae
bacterium OBRC8]
gi|402270753|gb|EJU20011.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Eubacteriaceae
bacterium OBRC8]
Length = 449
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/348 (28%), Positives = 179/348 (51%), Gaps = 31/348 (8%)
Query: 59 TFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKY 117
+ +G + +V GN+GN A I+L +K F + E+SSYQ+E I N
Sbjct: 120 SMLGDIYKKYDENTYVVGNIGN----AVLSSISLAKTKANF---ITELSSYQLETIVN-- 170
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRF 177
F ++V+LN+TPDHL RHKTM+NY K ++ + + +L ++ ++ ++ +
Sbjct: 171 FRVHIAVILNITPDHLSRHKTMENYKNAKYNITKNQIEGDFLVLNKDDESIDINLENVKS 230
Query: 178 NLAWIGAFP----GVKIDTEAKTASFEVPAVGVVSQ--LQLHNMKVMGRHNYHNAAVAAL 231
+ + GV DTE + + + + +++ ++ ++G+HN N +A +
Sbjct: 231 KVIYFSMKEKLKNGVYYDTEKGSI---ISTINRKEEEIIKVKDIHLLGKHNIQNT-LACV 286
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+V LD + + I+ + HR+Q V R++ V +V+DSK TN+++T + +
Sbjct: 287 TVSILD-NIPTALIAEAIKDFKAVKHRLQKV-REVDDVIYVNDSKGTNIDSTLKAIESI- 343
Query: 292 GHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPC 350
+ +++ GG K+L F+ LI+ N + ++ FG + LI T +
Sbjct: 344 DNDIILIAGGYDKMLE------FDDLIKGFNGKVKTLLLFGATKKLIRDTALKYDYK-DI 396
Query: 351 FAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
++ N+K V A+ +A GD ++LSP CAS+D +++FE RG F EL
Sbjct: 397 ISLKNLKQCVQIAKIIAQKGDVVLLSPACASWDMYQSFEERGDEFIEL 444
>gi|393778951|ref|ZP_10367208.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. oral taxon 412 str. F0487]
gi|392611133|gb|EIW93883.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. oral taxon 412 str. F0487]
Length = 444
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/383 (26%), Positives = 189/383 (49%), Gaps = 37/383 (9%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V+SE++FA+Q I + +TG+NGK+T + G++ +GGN+G
Sbjct: 84 EKGIAVISEIEFASQYTDSLI--VGITGSNGKTTTTLLTHHIFKEAGLQVGLGGNIGYSF 141
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKN 141
+E + + P + V +E+SS+Q++ ++F P ++V+LN+TPDHL+R+ +N
Sbjct: 142 AEL------VATENPPYYV--LEISSFQLD-GIEHFAPHIAVLLNITPDHLDRYDYKFEN 192
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF-- 199
Y +K + + + ++ + + + H I I+ E +F
Sbjct: 193 YINSKFRIAMNQTENDYLIYDADDEVITQWLSTHTIKSKLIP----FSIEKELPQGAFLK 248
Query: 200 ----EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
+ +++ + + + G+HN N A SV + + +L +++ +
Sbjct: 249 DNKIYIMLENQTTEIDVEEISLRGKHNIKNTMAA--SVAARLVNIRNNSLRESLKGFKGA 306
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
PHR++ V + + GVT+V+DSKATN+ + L +K V ++GGQ K N +
Sbjct: 307 PHRLEEV-KVVDGVTYVNDSKATNVNSVFYALDTIK-TPIVWIVGGQDK------GNDYN 358
Query: 316 KLIEPLNHH--RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
L+ P H R ++ G I ++ N ++ +M +AV A+ A GD +
Sbjct: 359 SLL-PYVHEKVRAIVCLGVDNTPIIQSFYNTIGTL--VETRSMDEAVKLAQGFAQEGDTV 415
Query: 374 VLSPGCASFDEFRNFEHRGMVFQ 396
+LSP CASFD F+N+E RG +F+
Sbjct: 416 LLSPACASFDLFKNYEERGDLFK 438
>gi|363889519|ref|ZP_09316879.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Eubacteriaceae
bacterium CM5]
gi|361966586|gb|EHL19485.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Eubacteriaceae
bacterium CM5]
Length = 449
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 177/348 (50%), Gaps = 31/348 (8%)
Query: 59 TFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKY 117
+ +G + +V GN+GN A I+L K F + E+SSYQ+E I N
Sbjct: 120 SMLGDIYKKYDENTYVVGNIGN----AVLSSISLAKPKANF---ITELSSYQLETIVN-- 170
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRF 177
F ++V+LN+TPDHL RHKTM+NY K ++ + + + +L ++ ++ ++ +
Sbjct: 171 FRVHIAVILNITPDHLSRHKTMENYKNAKYNITKNQIESDFLVLNKDDESIDINLENVKS 230
Query: 178 NLAWIGAFP----GVKIDTEAKT--ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
+ + GV D E + ++ ++ +H ++G+HN N +A +
Sbjct: 231 KVIYFSMKEKLKNGVYYDREKDSIISTINGKEEEIIKAEDIH---LLGKHNIQNT-LACV 286
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+V LD + + I+ + HR+Q V R++ GV +V+DSK TN+++T + +
Sbjct: 287 TVSILD-KIPTALIAEAIKDFKAVKHRLQKV-REVDGVIYVNDSKGTNIDSTLKAIESI- 343
Query: 292 GHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPC 350
+ +++ GG K+L F+ LI+ N + ++ FG + LI T +
Sbjct: 344 DNDIILIAGGYDKMLE------FDDLIKGFNGKVKTLLLFGATKKLIRDTALKYDYK-DI 396
Query: 351 FAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
++ N+K V A+ +A GD ++LSP CAS+D +++FE RG F EL
Sbjct: 397 ISLKNLKQCVQVAKIIAEKGDVVLLSPACASWDMYQSFEERGDEFIEL 444
>gi|237799288|ref|ZP_04587749.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. oryzae str. 1_6]
gi|331022144|gb|EGI02201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. oryzae str. 1_6]
Length = 448
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 116/370 (31%), Positives = 177/370 (47%), Gaps = 55/370 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+N KSTV T VG M G VGGNLG P AL + V+
Sbjct: 111 IIAITGSNAKSTVTTLVGDMAKAAGKRVAVGGNLGTP---------ALDLLSDDIDLYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYTGLPAYHQAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + + +
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKYLAFQFENL-----MPV 265
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
++KV G HN A A LG +G+ EA+ +++ HR Q + R+ GV +
Sbjct: 266 RDLKVRGAHN--QANALAALALGHAVGLPFEAMLASLREFTGLEHRCQWL-REHDGVDYY 322
Query: 273 DDSKATNLEATCTGLM----DLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCV 327
+DSKATN+ A + D+ G K V++ GG K + F L P+ H R V
Sbjct: 323 NDSKATNVGAALAAIKGLGSDIDG-KLVLIAGGDGKGAD------FSGLRAPVTEHCRAV 375
Query: 328 ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ G LI + L G ++P V ++ AV + +A GDA++LSP CAS D F+N
Sbjct: 376 VLLGRDAELIAQVL---GDAVPLIRVDTLQAAVERSASLAQGGDAVLLSPACASLDMFKN 432
Query: 388 FEHRGMVFQE 397
+E RG VF +
Sbjct: 433 YEERGRVFAQ 442
>gi|114045894|ref|YP_736444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
sp. MR-7]
gi|113887336|gb|ABI41387.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
MR-7]
Length = 439
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 115/381 (30%), Positives = 181/381 (47%), Gaps = 43/381 (11%)
Query: 22 LQSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+ +++ FA ++ R +L +TG+NGKSTV T VG+ML G+ VGGN+G
Sbjct: 87 LDMGIEVIGDVELFAREIADRKPCVLGITGSNGKSTVTTLVGEMLREAGMAVAVGGNIGI 146
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P AL + V+E+SS+Q+E + C S LN+T DH++R+ M
Sbjct: 147 P---------ALDLLTENADIFVLELSSFQLETTHSLNC-VASTCLNVTEDHMDRYSDMD 196
Query: 141 NYALTKCHLFSH---MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K L+ ++ + L + +N+ + F LA D++
Sbjct: 197 AYRKAKLRLYHQSRSIIFNRDDALTIPTEPMNQ----NSFGLAPPEGDEWGICDSKIYHG 252
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
E+ + + + ++G HN+ N +AA++++ +GVD + + H
Sbjct: 253 HSEI--------MPITEVSLIGSHNHAN-LLAAMALV-YAVGVDKQVMAKVARTFTGLSH 302
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKVLNGQESNGFE 315
R ++V GVT+V+DSKATN+ AT L L H +++ GG K + F
Sbjct: 303 RCEVVGVK-AGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDGKGAD------FS 355
Query: 316 KLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
L+EPL +IT G G + L V +M AV A +AT+GD ++L
Sbjct: 356 PLVEPLTKVTHLITLGRDGNKVA------ALKEGAIKVDSMAAAVAKAAELATSGDIVLL 409
Query: 376 SPGCASFDEFRNFEHRGMVFQ 396
SP CAS D + NF RG F+
Sbjct: 410 SPACASLDMYSNFMARGDDFR 430
>gi|398304275|ref|ZP_10507861.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
vallismortis DV1-F-3]
Length = 451
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 112/374 (29%), Positives = 181/374 (48%), Gaps = 26/374 (6%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V +E++ A + + K + +TG+NGK+T T + +ML +A + GN+G
Sbjct: 95 KRGIPVWTEIELAYYLT--NAKFIGITGSNGKTTTTTLIYEMLKADSQKALIAGNIGTVA 152
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
SE A+H + V E+SS+Q+ + F P +S++LN+ HL+ H T KNY
Sbjct: 153 SEVAYHADG-------DEWIVTELSSFQL-MGTHAFRPEISLILNIFDAHLDYHHTRKNY 204
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K ++ H + ++ NQ ++ A I F K + A +
Sbjct: 205 EKAKQKVYLHQTASDKAVV---NQDDETVVRLAEAGKAAIIPFSVSKRLEKGAYAKDGML 261
Query: 203 AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
+ L L + + G HN N +AA++V+ GV EA+ + HR+Q V
Sbjct: 262 MFNGEAILPLEEVVLPGTHNMENI-LAAIAVVKT-AGVSNEAVKKVLTSFTGVKHRLQYV 319
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322
++ + +DSKATN+ AT L K VILL G NGF+ L +
Sbjct: 320 -TTVKDRKFYNDSKATNILATTKALSAFD--KPVILLAGGL-----DRGNGFDDLKPYMK 371
Query: 323 HHRCVITFGYSGVLIWKTLVNNGLSIP-CFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
H + V+TFG + + + + N + I V N++ AV+ A ++ GD I+LSP CAS
Sbjct: 372 HVKAVLTFGQTAPKLEE--LGNEMGIQHVKRVDNVEQAVSAAFALSNEGDVILLSPACAS 429
Query: 382 FDEFRNFEHRGMVF 395
+D+F+ FE RG +F
Sbjct: 430 WDQFKTFEERGDMF 443
>gi|429740180|ref|ZP_19273885.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
saccharolytica F0055]
gi|429154119|gb|EKX96870.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
saccharolytica F0055]
Length = 443
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 104/384 (27%), Positives = 190/384 (49%), Gaps = 36/384 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
++ G ++SE++FA + K++ +TG+NGK+T + + + G + + GN+G
Sbjct: 83 IKKGIHIISEIEFAGRYT--HAKMVCITGSNGKTTTTSLIYHIFKAAGYDVGLAGNIGRS 140
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-TM 139
L AL ++ + V+E+SS+Q++ + Y F ++++LN+TPDHL+R+ M
Sbjct: 141 L--------ALQVAEDPHEYYVIELSSFQLD--DMYDFRANIAILLNITPDHLDRYDHCM 190
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
+NY +K + + + + + +K + N FP ++ + A
Sbjct: 191 QNYVDSKMRILQNQTAADSFIFWNDDPIIKNELKKYNINAF---QFPFSELKEKGSIAYI 247
Query: 200 EVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSVLGLDI-GVDVEALNSTIEILRT 254
E + ++ ++ + G+HN +N+ A ++ +I G+ E + ++
Sbjct: 248 EEGQYKIEKPTPFNMEQESLSLTGKHNIYNSLAAGIAT---NIAGIKKEVIRKSLSDFPG 304
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGF 314
HR++ V + + GV +++DSKATN+ A L +K ++++GGQ K G +
Sbjct: 305 VEHRLEKVLK-VGGVQYINDSKATNVGACWYALESMKT-PTILIIGGQDK---GNDYTSI 359
Query: 315 EKLIEPLNHHRCVITFGYSGVLIWKTLVN-NGLSIPCFAVANMKDAVNHARRMATNGDAI 373
++L++ +CV Y G K N + L IP NM D V RMA G +
Sbjct: 360 KQLVK----EKCV-GLVYLGADNKKLHDNFDSLGIPVEETHNMPDCVKACARMARPGYTV 414
Query: 374 VLSPGCASFDEFRNFEHRGMVFQE 397
+LSP CASFD F+N E RG F+E
Sbjct: 415 LLSPCCASFDLFKNMEDRGEQFKE 438
>gi|340789125|ref|YP_004754590.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Collimonas
fungivorans Ter331]
gi|340554392|gb|AEK63767.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Collimonas
fungivorans Ter331]
Length = 508
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 120/394 (30%), Positives = 182/394 (46%), Gaps = 51/394 (12%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKF-QVA 102
K++A+TGTNGK+TV + G + G+ V GN+ S AA + K QV
Sbjct: 124 KVIAITGTNGKTTVTSLTGLLCERAGLTVQVAGNI----SPAALDVLRNALEKDALPQVW 179
Query: 103 VVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS----HMVNTKL 158
V+E+SS+Q+ + +LN+T DHL+ H M++Y K +FS ++N
Sbjct: 180 VLELSSFQLHATCNLHA-DAATILNITQDHLDWHGDMESYVADKARIFSADTVRVLNRDD 238
Query: 159 GL-LPFGNQH-----LNEAIKGHRFNLA------WIG-AFPGVKIDT----EAKTASFEV 201
L + F N + +E + G F L W+ A PG + + +K +
Sbjct: 239 PLTMQFNNGNSISFGFDEPLDGDCFGLVSDNGMQWLSVAVPGDEEERVEKRRSKKEQLAL 298
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
V V + +++ GRHN NA A +D+ L + PHR+++
Sbjct: 299 LPVSVKRLMPADALRIRGRHNAANALAALALCRAIDL--PFAPLLHGLREYHGEPHRVEL 356
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKC---------VILLGGQAKVLNGQESN 312
V I GV + DDSK TN+ AT L L G C +++ GG+ K GQ+
Sbjct: 357 VTT-IGGVEYYDDSKGTNVGATVAALNGL-GRGCDGDGNASRLLLIAGGEGK---GQD-- 409
Query: 313 GFEKLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD 371
F L PL + R ++ G +I + + A +++AV A +A GD
Sbjct: 410 -FSPLAAPLATYGRALLLIGRDAPVIRAAVEKQAAGVAMVDCATLEEAVTRAAELAYAGD 468
Query: 372 AIVLSPGCASFDEFRNFEHRGMVF----QELAFS 401
A++LSP CASFD FRN+ HR VF +ELA S
Sbjct: 469 AVLLSPACASFDMFRNYAHRAQVFVDAVRELALS 502
>gi|168492240|ref|ZP_02716383.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae CDC0288-04]
gi|183573524|gb|EDT94052.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae CDC0288-04]
Length = 450
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 106/368 (28%), Positives = 182/368 (49%), Gaps = 25/368 (6%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P S+ A
Sbjct: 99 VLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYPASQVA- 155
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ S K V+E+SS+Q+ + + F P ++V+ NL P H++ H + Y K
Sbjct: 156 ---QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSEYVAAKW 208
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
++ + M +L F NQ L + + A + F ++ A ++ G V
Sbjct: 209 NIQNKMTAADFLVLNF-NQDLVKDLASK--TEATVVPFSTLEKVDGAYLEDGQLYFRGEV 265
Query: 208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQ 267
+ + + V G HN N A+A ++V L GVD + + T+ HR+Q V DI+
Sbjct: 266 V-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQFVD-DIK 321
Query: 268 GVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCV 327
GV + +DSK+TN+ AT L K V++ GG + N F++L+ + + +
Sbjct: 322 GVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDITGLKKM 375
Query: 328 ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ G S + + G++ ++ DA A +AT GD ++LSP AS+D + N
Sbjct: 376 VILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANASWDMYAN 433
Query: 388 FEHRGMVF 395
FE RG +F
Sbjct: 434 FEVRGDLF 441
>gi|373947900|ref|ZP_09607861.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
OS183]
gi|386326252|ref|YP_006022369.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
BA175]
gi|333820397|gb|AEG13063.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
BA175]
gi|373884500|gb|EHQ13392.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
OS183]
Length = 439
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 181/383 (47%), Gaps = 49/383 (12%)
Query: 25 GKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
G V+ +++ FA ++ R ++ +TG+NGKSTV T VG+M GI VGGN+G P
Sbjct: 90 GIEVIGDVELFAREIADRKPCVIGITGSNGKSTVTTLVGEMAREAGIAVAVGGNIGVP-- 147
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
AL + V+E+SS+Q+E + C V+ LN++ DH++R+ + Y
Sbjct: 148 -------ALDLLHENADLFVLELSSFQLETTHSLKC-VVATCLNISEDHMDRYSDIAAYR 199
Query: 144 LTKCHLF--SHMV----NTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
K L+ S V + KL + P E + + F LA A D++
Sbjct: 200 EAKLRLYKQSRAVLFNRDDKLTVPP-------EPMNQNSFGLAAPEADEWGISDSKIYHG 252
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
S E+ + + + ++G HN+ N +AA++++ +GVD + + H
Sbjct: 253 SSEI--------MPITEVSLIGSHNHAN-LLAAMALVDA-VGVDKQVMAKVARSFTGLSH 302
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKVLNGQESNGFE 315
R ++V GVT+V+DSKATN+ AT L L H +++ GG K + F+
Sbjct: 303 RCEVVGIK-NGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDGKGAD------FK 355
Query: 316 KLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
L L +IT G G I L V M AV A +AT+GD ++L
Sbjct: 356 PLGVALAKVTHLITLGRDGKKIA------ALKDGAVKVDTMAAAVTKAAELATSGDIVLL 409
Query: 376 SPGCASFDEFRNFEHRGMVFQEL 398
SP CAS D + NF RG F+ L
Sbjct: 410 SPACASLDMYSNFMARGDDFRNL 432
>gi|386014663|ref|YP_005932940.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Pantoea
ananatis AJ13355]
gi|327392722|dbj|BAK10144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Pantoea
ananatis AJ13355]
Length = 438
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 119/381 (31%), Positives = 176/381 (46%), Gaps = 79/381 (20%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + VGGN+G P AL K Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGLP---------ALSLLKAPAQLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E + + +LN+T DH++R+ M+ Y K ++ + +VN G
Sbjct: 158 ELSSFQLETTHS-LKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENAQVCVVNADDG 216
Query: 160 L---------------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+ + G+ HLN+ + W+ A G K+
Sbjct: 217 MTMPVRGADARCVSFGIDIGDYHLNK-----QQGSIWLRA-KGEKV-------------- 256
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSV--LGLDIGVDVEALNSTIEILRTPPHRMQIV 262
L M ++G+HNY NA A +GL + AL + + PHR Q+V
Sbjct: 257 -----LNTDEMTLVGQHNYTNALAALALADAVGLPRSTSLSALAAYSGL----PHRFQLV 307
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKVLNGQESNGFEKLIEPL 321
H+ +GV W++DSKATN+ +T L L+ + + +LLGG K S F L L
Sbjct: 308 HQS-RGVRWINDSKATNVGSTEAALKGLEVNGTLWLLLGGDGK------SADFSPLATYL 360
Query: 322 NHHRC-VITFGYSGVLIWKTLVNNGLSIPCFAVAN--MKDAVNHARRMATNGDAIVLSPG 378
R + FG G + P AV ++ A+ R D ++LSP
Sbjct: 361 QGDRIRLYCFGRDGDALAALR-------PDVAVRTDTLQQAMEQIARQVQPDDMVLLSPA 413
Query: 379 CASFDEFRNFEHRGMVFQELA 399
CAS D+FRNFE RG VF +LA
Sbjct: 414 CASLDQFRNFEQRGDVFAQLA 434
>gi|433545444|ref|ZP_20501798.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus agri
BAB-2500]
gi|432183267|gb|ELK40814.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus agri
BAB-2500]
Length = 454
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 115/382 (30%), Positives = 189/382 (49%), Gaps = 45/382 (11%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A+Q+ I+ +TG+NGK+T T VGQ+L G++ VGGN+G L
Sbjct: 96 VVTEVELASQI--AKAPIIGITGSNGKTTTTTLVGQILKEAGLDVLVGGNIGTVL----- 148
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
C + P Q V E+SS+Q+ + + F P + V+LNL P HL+ H TM+ Y K
Sbjct: 149 -CGLAEEAGPD-QWLVAELSSFQL-MGTREFRPHIGVLLNLYPAHLDYHHTMEAYLDAKL 205
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
+F++ + +LPF + LA G P ++ +KT +VP V
Sbjct: 206 KMFANQTADDIAILPFDQPEI----------LAKCGELPA-RVYYFSKTQ--QVPRGAFV 252
Query: 208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLD---IGVDVEAL-----NSTIEILRTPP--- 256
+ G+ + AVA ++V LD + V L ++ +++L T P
Sbjct: 253 QDGVIRFTDGQGQSD-DIIAVADMTVPHLDNALAAILVAKLAGANTSAIVQVLSTFPGVE 311
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK 316
HRM+ V I GV + +DSKATN EA L + V + GG + ++ F +
Sbjct: 312 HRMEYVD-SIAGVKYYNDSKATNPEAASRALQACQ-EPVVWICGGLDRGVD------FRE 363
Query: 317 LIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
L+ + + V+ G + ++ G++ V ++ AV A R+A +GD ++L
Sbjct: 364 LLPVMKGRVKAVVALGQTAPILLARAEEAGIN-ERIHVDTVEKAVLAASRLAQSGDVVLL 422
Query: 376 SPGCASFDEFRNFEHRGMVFQE 397
SP CAS+D F +FE RG +F++
Sbjct: 423 SPACASWDMFPSFEVRGSMFKD 444
>gi|418166309|ref|ZP_12802965.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17971]
gi|353829905|gb|EHE10035.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17971]
Length = 450
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 184/374 (49%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + + K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIATDKNTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGLFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|225860677|ref|YP_002742186.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae Taiwan19F-14]
gi|298229802|ref|ZP_06963483.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae str. Canada MDR_19F]
gi|298254818|ref|ZP_06978404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae str. Canada MDR_19A]
gi|298502480|ref|YP_003724420.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae TCH8431/19A]
gi|387787859|ref|YP_006252927.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae ST556]
gi|417312264|ref|ZP_12098980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA04375]
gi|417686144|ref|ZP_12335422.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41301]
gi|417695848|ref|ZP_12345028.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47368]
gi|418082571|ref|ZP_12719773.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44288]
gi|418084770|ref|ZP_12721956.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47281]
gi|418091305|ref|ZP_12728450.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44452]
gi|418100543|ref|ZP_12737631.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 7286-06]
gi|418107064|ref|ZP_12744104.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41410]
gi|418109649|ref|ZP_12746678.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA49447]
gi|418118629|ref|ZP_12755589.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA18523]
gi|418150258|ref|ZP_12787013.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA14798]
gi|418156982|ref|ZP_12793700.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA16833]
gi|418159338|ref|ZP_12796041.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17227]
gi|418168782|ref|ZP_12805428.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA19077]
gi|418170909|ref|ZP_12807536.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA19451]
gi|418195720|ref|ZP_12832200.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47688]
gi|418197592|ref|ZP_12834057.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47778]
gi|418220613|ref|ZP_12847269.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47751]
gi|418222965|ref|ZP_12849610.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 5185-06]
gi|418227283|ref|ZP_12853903.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 3063-00]
gi|419422185|ref|ZP_13962404.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA43264]
gi|419424727|ref|ZP_13964928.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 7533-05]
gi|419426853|ref|ZP_13967036.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 5652-06]
gi|419435569|ref|ZP_13975665.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 8190-05]
gi|419437649|ref|ZP_13977722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13499]
gi|419444309|ref|ZP_13984324.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA19923]
gi|419446430|ref|ZP_13986435.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 7879-04]
gi|419449115|ref|ZP_13989112.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 4075-00]
gi|419450671|ref|ZP_13990658.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae EU-NP02]
gi|419488318|ref|ZP_14028071.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44386]
gi|419501435|ref|ZP_14041121.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47628]
gi|419520641|ref|ZP_14060238.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA05245]
gi|419527533|ref|ZP_14067077.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17719]
gi|421272333|ref|ZP_15723180.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SPAR55]
gi|421287184|ref|ZP_15737950.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA58771]
gi|254766062|sp|C1CQG4.1|MURD_STRZT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|225728254|gb|ACO24105.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae Taiwan19F-14]
gi|298238075|gb|ADI69206.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae TCH8431/19A]
gi|327390416|gb|EGE88757.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA04375]
gi|332075981|gb|EGI86447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41301]
gi|332203845|gb|EGJ17912.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47368]
gi|353758008|gb|EHD38601.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44288]
gi|353760005|gb|EHD40587.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47281]
gi|353766678|gb|EHD47218.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44452]
gi|353773252|gb|EHD53751.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 7286-06]
gi|353780541|gb|EHD60998.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41410]
gi|353784942|gb|EHD65362.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA49447]
gi|353792214|gb|EHD72587.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA18523]
gi|353817379|gb|EHD97583.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA14798]
gi|353825003|gb|EHE05170.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA16833]
gi|353825207|gb|EHE05373.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17227]
gi|353836701|gb|EHE16789.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA19077]
gi|353837079|gb|EHE17165.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA19451]
gi|353862247|gb|EHE42180.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47688]
gi|353864792|gb|EHE44703.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47778]
gi|353877482|gb|EHE57325.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47751]
gi|353880237|gb|EHE60053.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 5185-06]
gi|353883656|gb|EHE63462.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 3063-00]
gi|379137601|gb|AFC94392.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
pneumoniae ST556]
gi|379540357|gb|EHZ05530.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13499]
gi|379540544|gb|EHZ05716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA05245]
gi|379566478|gb|EHZ31466.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17719]
gi|379572002|gb|EHZ36959.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA19923]
gi|379589516|gb|EHZ54355.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA43264]
gi|379590433|gb|EHZ55271.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44386]
gi|379601796|gb|EHZ66568.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47628]
gi|379613970|gb|EHZ78680.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 7879-04]
gi|379617238|gb|EHZ81931.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 8190-05]
gi|379618306|gb|EHZ82981.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 5652-06]
gi|379620627|gb|EHZ85282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 7533-05]
gi|379624173|gb|EHZ88806.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 4075-00]
gi|379624570|gb|EHZ89201.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae EU-NP02]
gi|395877892|gb|EJG88961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SPAR55]
gi|395889593|gb|EJH00600.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA58771]
Length = 450
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 184/374 (49%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + + K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIATDK---NTLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGLFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMAAADFLVLNF-NQDLAKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|433446203|ref|ZP_20410262.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anoxybacillus
flavithermus TNO-09.006]
gi|432000499|gb|ELK21393.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anoxybacillus
flavithermus TNO-09.006]
Length = 444
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 108/370 (29%), Positives = 173/370 (46%), Gaps = 28/370 (7%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A + I+ +TG+NGK+T T + ML + GN+G E A
Sbjct: 93 VITEVEIAYET--SKAPIIGITGSNGKTTTTTLIYHMLQEAKRWPLIAGNIGTVACEVAK 150
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
K V V+E+SS+Q+ + F P ++V+LN+ HL+ H T + YA K
Sbjct: 151 RAT-------KDDVIVMELSSFQL-LGTIRFRPHIAVLLNIFDAHLDYHGTKEAYAEAKG 202
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
++F + T ++ + + + K R A + K + ++
Sbjct: 203 NIFKNQTETDYAVVNADDPIVMQLAKKSRAQHVPFSATTPLSYGATVKEGAIYFHDERII 262
Query: 208 SQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRD 265
+ ++ + G HN N AAVAA + G D EA+ + PHR+Q V +
Sbjct: 263 D---VTDVALRGAHNIENILAAVAATKLAG----ADNEAIRRVLTTFTGVPHRLQFV-AE 314
Query: 266 IQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHR 325
I G + +DSKATN+ AT L H+ VILL G N F++L+ H +
Sbjct: 315 INGRKFYNDSKATNILATQKALSAF--HEPVILLAGGL-----DRGNEFDELLPYFKHVK 367
Query: 326 CVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEF 385
VITFG + I + G+ V N++ A A ++ GD I+LSP CAS+D++
Sbjct: 368 AVITFGQTAPKIERVAREAGIQ-QLKRVDNVEQAAFAAYEWSSPGDIILLSPACASWDQY 426
Query: 386 RNFEHRGMVF 395
+ FE RG +F
Sbjct: 427 KTFEQRGDMF 436
>gi|424592101|ref|ZP_18031525.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1037(10)]
gi|408029846|gb|EKG66545.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1037(10)]
Length = 440
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 126/423 (29%), Positives = 194/423 (45%), Gaps = 72/423 (17%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELD-FAAQVIPRSIKILAVTGTN 52
W L WL + + G+A +L +G RV+ +++ FA V ++A+TG+N
Sbjct: 61 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIRVVGDIELFAWHV---DTPVIAITGSN 117
Query: 53 GKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME 112
GKSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 118 GKSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLE 168
Query: 113 IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQH 167
+ + LNL+ DH++R++ M++Y K +F H +VN P H
Sbjct: 169 TTSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAH 227
Query: 168 LNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
L G +F+LA + EA A E + ++GRHN
Sbjct: 228 LQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------LSLVGRHNV 273
Query: 224 HN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE 281
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+
Sbjct: 274 ANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVA 328
Query: 282 ATCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKT 340
+T L LK + +L+GG K G + ++ L C FG G
Sbjct: 329 STLAALSGLKIEGQLYLLVGGVGK---GADFTPLAPVLATLPVQLC--CFGVDGHQF--- 380
Query: 341 LVNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
+P A D+ + R +GD ++LSP CASFD+F+NF RG +F
Sbjct: 381 -------MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFA 433
Query: 397 ELA 399
+LA
Sbjct: 434 QLA 436
>gi|113971900|ref|YP_735693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
sp. MR-4]
gi|113886584|gb|ABI40636.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
MR-4]
Length = 439
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 115/381 (30%), Positives = 181/381 (47%), Gaps = 43/381 (11%)
Query: 22 LQSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+ +++ FA ++ R ++ +TG+NGKSTV T VG+ML G+ VGGN+G
Sbjct: 87 LDMGIEVIGDVELFAREIADRKPCVIGITGSNGKSTVTTLVGEMLREAGMAVAVGGNIGI 146
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P AL + V+E+SS+Q+E + C S LN+T DH++R+ M
Sbjct: 147 P---------ALDLLTENADIFVLELSSFQLETTHSLNC-VASTCLNVTEDHMDRYSDMD 196
Query: 141 NYALTKCHLFSH---MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K L+ ++ + L + +N+ + F LA D++
Sbjct: 197 AYRKAKLRLYHQSRSIIFNRDDALTIPTEPMNQ----NSFGLAPPEGDEWGICDSKIYHG 252
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
E+ + + + ++G HN+ N +AA++++ +GVD + + H
Sbjct: 253 HSEI--------MPITEVSLIGSHNHAN-LLAAMALV-YAVGVDKQVMAKVARTFTGLSH 302
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKVLNGQESNGFE 315
R ++V GVT+V+DSKATN+ AT L L H +++ GG K + F
Sbjct: 303 RCEVVGVK-AGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDGKGAD------FS 355
Query: 316 KLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
L+EPL +IT G G I L V +M AV A +AT+GD ++L
Sbjct: 356 PLVEPLTKVTHLITLGRDGNKIA------ALKEGAIKVDSMAAAVAKAAELATSGDIVLL 409
Query: 376 SPGCASFDEFRNFEHRGMVFQ 396
SP CAS D + NF RG F+
Sbjct: 410 SPACASLDMYSNFMARGDDFR 430
>gi|149005804|ref|ZP_01829543.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP18-BS74]
gi|307126882|ref|YP_003878913.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 670-6B]
gi|417676448|ref|ZP_12325861.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17545]
gi|418095790|ref|ZP_12732906.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA16531]
gi|418112041|ref|ZP_12749044.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41538]
gi|418132342|ref|ZP_12769217.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA11304]
gi|418154728|ref|ZP_12791459.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA16242]
gi|418225121|ref|ZP_12851750.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae NP112]
gi|419466824|ref|ZP_14006706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA05248]
gi|419512095|ref|ZP_14051729.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA05578]
gi|419516379|ref|ZP_14055997.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA02506]
gi|419525433|ref|ZP_14064998.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA14373]
gi|421282886|ref|ZP_15733675.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA04216]
gi|421298150|ref|ZP_15748840.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA60080]
gi|147762744|gb|EDK69704.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP18-BS74]
gi|306483944|gb|ADM90813.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 670-6B]
gi|332077113|gb|EGI87575.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17545]
gi|353772570|gb|EHD53076.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA16531]
gi|353785690|gb|EHD66108.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41538]
gi|353808008|gb|EHD88277.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA11304]
gi|353823020|gb|EHE03195.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA16242]
gi|353882429|gb|EHE62240.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae NP112]
gi|379543537|gb|EHZ08686.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA05248]
gi|379559824|gb|EHZ24851.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA14373]
gi|379636565|gb|EIA01123.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA05578]
gi|379640382|gb|EIA04921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA02506]
gi|395882752|gb|EJG93796.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA04216]
gi|395903653|gb|EJH14581.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA60080]
Length = 450
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 183/374 (48%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVAQTA----SDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 PGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYEIATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|419428954|ref|ZP_13969123.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA11856]
gi|379552214|gb|EHZ17304.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA11856]
Length = 450
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 184/374 (49%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + + K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QISTDK---NTLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGLFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMAAADFLVLNF-NQDLAKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|24375706|ref|NP_719749.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase MurD [Shewanella
oneidensis MR-1]
gi|30316031|sp|Q8E9P6.1|MURD_SHEON RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|24350640|gb|AAN57193.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase MurD [Shewanella
oneidensis MR-1]
Length = 439
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 118/381 (30%), Positives = 183/381 (48%), Gaps = 43/381 (11%)
Query: 22 LQSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+ +++ FA ++ R ++ +TG+NGK+TV T VG+ML GI VGGN+G
Sbjct: 87 LDMGIEVIGDVELFAREIADRKPCVIGITGSNGKTTVTTLVGEMLREAGIAVAVGGNIGI 146
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P AL K + V+E+SS+Q+E + C S LN+T DH++R+ M
Sbjct: 147 P---------ALDLLKENADIFVLELSSFQLETTHSLNC-VASTCLNVTEDHMDRYSDMD 196
Query: 141 NYALTKCHLFSH---MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K L+ ++ + L + +N+ + F LA D++
Sbjct: 197 AYRKAKLRLYHQSRSIIFNRDDALTIPTEPMNQ----NSFGLAPPEGDEWGICDSKIYHG 252
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
E+ + VS ++G HN+ N +AA++++ +GVD + + + H
Sbjct: 253 HSEIMPITEVS--------LIGSHNHAN-LLAAMALV-YAVGVDKQVMANVARTFTGLSH 302
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKVLNGQESNGFE 315
R ++V GVT+V+DSKATN+ AT L L H +++ GG K + F
Sbjct: 303 RCEVVGVK-GGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDGKGAD------FS 355
Query: 316 KLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
L EPL +IT G G I L V +M AV A ++AT+GD ++L
Sbjct: 356 PLEEPLTKVTHLITLGRDGNKIA------ALKEGAIKVDSMAAAVAKAAQLATSGDIVLL 409
Query: 376 SPGCASFDEFRNFEHRGMVFQ 396
SP CAS D + NF RG F+
Sbjct: 410 SPACASLDMYSNFMARGDDFR 430
>gi|224536612|ref|ZP_03677151.1| hypothetical protein BACCELL_01487 [Bacteroides cellulosilyticus
DSM 14838]
gi|423223526|ref|ZP_17209995.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
cellulosilyticus CL02T12C19]
gi|224521703|gb|EEF90808.1| hypothetical protein BACCELL_01487 [Bacteroides cellulosilyticus
DSM 14838]
gi|392638406|gb|EIY32247.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
cellulosilyticus CL02T12C19]
Length = 444
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 110/392 (28%), Positives = 190/392 (48%), Gaps = 49/392 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G V+SE++FA + + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKKQGTPVISEIEFAGRYT--NAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL + + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVATDQHDYYVIELSSFQLD--NMYKFRANIAVLMNITPDHLDRYNHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID-----TE 193
M+NY K + + + + + + H A + F +K D E
Sbjct: 190 MQNYVDAKFRITQNQTPEDAFIFWNDDPIIKRELDKHGL-CAHLYPFSAMKEDGAIAYVE 248
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
P + ++ + + G HN +N+ A +S L G++ E + + +
Sbjct: 249 DGEVEINEP---IAFNMEQEKLALQGTHNLYNSLAAGISA-NL-AGIEKEYIRRALSDFK 303
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
HR++ V ++GV +++DSKATN+ + L +K K V++LGG+ K N
Sbjct: 304 GVEHRLEKVAT-VRGVEFINDSKATNVNSCWYALQSMKT-KTVLILGGKDK------GND 355
Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGL-------SIPCFAV-ANMKDAVNHARR 365
+ + IE L +C L++ L N L +P V MKDAV+ A R
Sbjct: 356 YTE-IEDLVREKC-------SALVYLGLHNEKLHDFFDRMGLPVADVQTGMKDAVDAAFR 407
Query: 366 MATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
+A G+ ++LSP CASFD F ++E RG F+E
Sbjct: 408 LAKKGETVLLSPCCASFDLFNSYEDRGDQFKE 439
>gi|423342823|ref|ZP_17320537.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides
johnsonii CL02T12C29]
gi|409217078|gb|EKN10057.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides
johnsonii CL02T12C29]
Length = 453
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 113/397 (28%), Positives = 196/397 (49%), Gaps = 47/397 (11%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G ++SE++FA + K++ +TG+NGK+T +L G++
Sbjct: 84 KAPIIKKLKEKGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTMLTYHILRQAGVDVG 141
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+GN L AL ++ V V+E+SS+Q++ N Y F ++V+LN+TPDH
Sbjct: 142 LAGNVGNSL--------ALQVAEDPHAVYVIELSSFQLD--NMYDFKADIAVLLNITPDH 191
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP----- 186
L+R+ M+NY K + + + + + + + R A + F
Sbjct: 192 LDRYNYEMQNYVDAKFRILQNQT-VEDAFIFWNDDPIIAREIAKRHPEATLYPFAETHEA 250
Query: 187 GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
GVK TE K E + L + + G HN +N+ + ++ +DI E L
Sbjct: 251 GVKGYTEDKKIRIETSNGTFTMEQDL--LALSGTHNLYNSLASGIASKLVDIHD--ENLR 306
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVL 306
+++ HR++ V R ++GV +++DSKATN+ + L + V++LGG K
Sbjct: 307 ASLSDFTGVEHRLEKVAR-VRGVDYINDSKATNVNSCWYALQSMTT-PLVLILGGTDK-- 362
Query: 307 NGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGL------SIPCFAVA-NMKDA 359
G + + E+L++ H LI+ + N L +P A +M++A
Sbjct: 363 -GNDYSEIEELVKKKVH-----------ALIFLGVDNTKLHAFFDGKVPVIEDARSMEEA 410
Query: 360 VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
V+ A ++A GD ++LSP CASFD F+++E RG F+
Sbjct: 411 VSKAYKLAEKGDTVLLSPCCASFDLFKSYEDRGDQFK 447
>gi|218258175|ref|ZP_03474577.1| hypothetical protein PRABACTJOHN_00231 [Parabacteroides johnsonii
DSM 18315]
gi|218225698|gb|EEC98348.1| hypothetical protein PRABACTJOHN_00231 [Parabacteroides johnsonii
DSM 18315]
Length = 453
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 113/397 (28%), Positives = 195/397 (49%), Gaps = 47/397 (11%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G ++SE++FA + K++ +TG+NGK+T +L G++
Sbjct: 84 KAPIIKKLKEKGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTMLTYHILRQAGVDVG 141
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+GN L AL ++ V V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 142 LAGNVGNSL--------ALQVAEDPHAVYVIELSSFQLD--NMYDFKADIAILLNITPDH 191
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP----- 186
L+R+ M+NY K + + + + + I R A + F
Sbjct: 192 LDRYNYEMQNYVDAKFRILQNQTAEDAFIFWNDDPIIAREI-AKRHPEATLYPFAETHEA 250
Query: 187 GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
GVK TE K E + L + + G HN +N+ + ++ +DI E L
Sbjct: 251 GVKGYTEDKKIRIETSNGTFTMEQDL--LALSGTHNLYNSLASGIASKLVDIHD--ENLR 306
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVL 306
+++ HR++ V R ++GV +++DSKATN+ + L + V++LGG K
Sbjct: 307 ASLSDFTGVEHRLEKVAR-VRGVDYINDSKATNVNSCWYALQSMTT-PLVLILGGTDK-- 362
Query: 307 NGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGL------SIPCFAVA-NMKDA 359
G + + E+L++ H LI+ + N L +P A +M++A
Sbjct: 363 -GNDYSEIEELVKKKVH-----------ALIFLGVDNTKLHAFFDGKVPVIEDARSMEEA 410
Query: 360 VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
V+ A ++A GD ++LSP CASFD F+++E RG F+
Sbjct: 411 VSKAYKLAEKGDTVLLSPCCASFDLFKSYEDRGDQFK 447
>gi|168486808|ref|ZP_02711316.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae CDC1087-00]
gi|418145904|ref|ZP_12782689.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13637]
gi|418184467|ref|ZP_12821015.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47283]
gi|419510138|ref|ZP_14049782.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae NP141]
gi|419529962|ref|ZP_14069493.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA40028]
gi|421212703|ref|ZP_15669665.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070108]
gi|421214890|ref|ZP_15671821.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070109]
gi|183570252|gb|EDT90780.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae CDC1087-00]
gi|353815842|gb|EHD96055.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13637]
gi|353852065|gb|EHE32055.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47283]
gi|379574702|gb|EHZ39640.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA40028]
gi|379633331|gb|EHZ97900.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae NP141]
gi|395581110|gb|EJG41583.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070108]
gi|395582449|gb|EJG42911.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070109]
Length = 450
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 184/374 (49%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + + K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIATDK---NTLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGLFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|421860348|ref|ZP_16292479.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Paenibacillus
popilliae ATCC 14706]
gi|410830096|dbj|GAC42916.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Paenibacillus
popilliae ATCC 14706]
Length = 476
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 116/402 (28%), Positives = 189/402 (47%), Gaps = 51/402 (12%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + S I+ +TG+NGK+T T+VG ML G+ V GN+G P
Sbjct: 93 LALGIEVVTEVEVAYHL--SSAPIIGITGSNGKTTTTTWVGNMLEAAGLRPIVAGNIGTP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
L +AA A +V + E+SS+Q++ F P V+ +LN++ HL+ H TM++
Sbjct: 151 LCQAAGEAGA-------DKVLLAELSSFQLK-GTSAFRPRVASLLNISNTHLDYHVTMED 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y +K LF +M N + +L + + W+ + V+ + E
Sbjct: 203 YVQSKARLFRNMANGDVAVLNADDATCRVLAPDIGARIWWVSSTQRVECGVYVEPPYPEA 262
Query: 202 PAVGVVSQLQL---------------HNMKVMGRHNYHNA-AVAALSVLGLDIGVDVEAL 245
G QL + V GR+N NA A A+S+ G + L
Sbjct: 263 SGEGEEDDRQLVYADEAGQLHPIIGVREIGVPGRYNVDNALAAVAISIAA---GAEPAVL 319
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKV 305
+ R HR++ V ++ G ++ ++SKATN +AT L + V++ GG +
Sbjct: 320 ADPLRSFRGVEHRLEYVG-EVNGASYYNNSKATNTKATLMALEAFEA-PVVLIAGGLDRG 377
Query: 306 LNGQESNGFEKLIEPLNHHR--CVITFGYSGVLIWKTLVNNGLSIPCFAVA-----NMKD 358
L+ F +LI P+ R V+T G + ++ GL+ AV N +
Sbjct: 378 LD------FLELI-PVLEERAAAVVTMGETREILAAIAAKAGLT--NVAVVDNVDNNASE 428
Query: 359 AVNHARRMATN----GDAIVLSPGCASFDEFRNFEHRGMVFQ 396
AV+ A R+A GD ++LSP CAS+D F ++E RG +F+
Sbjct: 429 AVSEAVRLAAGYAKPGDVVLLSPACASWDMFPSYEERGRMFK 470
>gi|189464537|ref|ZP_03013322.1| hypothetical protein BACINT_00879 [Bacteroides intestinalis DSM
17393]
gi|189438327|gb|EDV07312.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
intestinalis DSM 17393]
Length = 444
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 109/393 (27%), Positives = 190/393 (48%), Gaps = 51/393 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKEQGTPIISEIEFAGRYT--NAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL + + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVATDQHDYYVIELSSFQLD--NMYKFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID-----TE 193
M+NY K + + + + + + H A + F VK D E
Sbjct: 190 MQNYVDAKFRITQNQTPEDAFIFWNDDPIIKRELDKHGLR-AHLYPFSAVKEDGAIAYVE 248
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTIEIL 252
P + ++ + + G HN +N+ A +S L G++ E + +
Sbjct: 249 DGEVEINEP---IAFNMEQEKLALQGTHNLYNSLAAGISANLA---GIEKEYIRRALSDF 302
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
+ HR++ V ++GV +++DSKATN+ + L +K K V++LGG+ K N
Sbjct: 303 KGVEHRLEKVAT-VRGVEFINDSKATNVNSCWYALQSMKT-KTVLILGGKDK------GN 354
Query: 313 GFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGL-------SIPCFAV-ANMKDAVNHAR 364
+ + IE L +C L++ L N L +P V MKDAV+ A
Sbjct: 355 DYTE-IEDLVREKC-------SALVYLGLHNEKLHDFFDRMGLPVADVQTGMKDAVDAAF 406
Query: 365 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
R+A G+ ++LSP CASFD F ++E RG F++
Sbjct: 407 RLAKKGETVLLSPCCASFDLFSSYEDRGDQFKK 439
>gi|398813805|ref|ZP_10572496.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus sp.
BC25]
gi|398037858|gb|EJL31035.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus sp.
BC25]
Length = 454
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 114/387 (29%), Positives = 191/387 (49%), Gaps = 49/387 (12%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V++E++ A+Q+ I+ +TG+NGK+T T VG + +G++A VGGN+G L
Sbjct: 93 GIPVVTEVELASQI--AKAPIIGITGSNGKTTTTTLVGLIFKEVGLDAKVGGNIGTVL-- 148
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
C + P + V E+SS+Q+ + + F P + V+LNL P HL+ H TM+ Y
Sbjct: 149 ----CGLAEEAGPD-EWLVAELSSFQL-MGTREFRPHIGVLLNLYPAHLDYHHTMEEYLA 202
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--------GAF--PGVKIDTEA 194
K +F++ +LP+ + E K + + GAF G+ + +
Sbjct: 203 AKLKMFANQTADDAAILPYDQPEIVEKCKDLPSAIYYFSKSQEVPKGAFIKDGLILFADG 262
Query: 195 KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
+ + A+ ++ L N A+AA+ V L G D + S I++L T
Sbjct: 263 NGNTEPIVAIADITVPHLDN------------ALAAILVAKL-AGADKQ---SIIQVLTT 306
Query: 255 PP---HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQES 311
P HRM+ V I+GV + +DSKATN EA L K V + GG + ++
Sbjct: 307 FPGVEHRMEFVD-SIRGVKYFNDSKATNPEAASRALQACK-EPVVWICGGLDRGVD---- 360
Query: 312 NGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 370
F +L+ + + VI G + ++ + G++ V ++ AV A ++A +G
Sbjct: 361 --FRELLPVIQGRVKAVIALGQTAPILLERAQEAGIN-ERIHVDTVEKAVLAASQLAESG 417
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVFQE 397
D ++LSP CAS+D F +FE RG +F++
Sbjct: 418 DVVLLSPACASWDMFPSFETRGSMFKD 444
>gi|221231502|ref|YP_002510654.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae ATCC 700669]
gi|415697588|ref|ZP_11456818.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 459-5]
gi|415749105|ref|ZP_11477049.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SV35]
gi|415751786|ref|ZP_11478897.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SV36]
gi|418122962|ref|ZP_12759897.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44378]
gi|418127548|ref|ZP_12764444.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae NP170]
gi|418136719|ref|ZP_12773562.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA11663]
gi|418177719|ref|ZP_12814303.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41565]
gi|419472744|ref|ZP_14012597.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13430]
gi|254766058|sp|B8ZMZ6.1|MURD_STRPJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|220673962|emb|CAR68471.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae ATCC 700669]
gi|353798435|gb|EHD78765.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44378]
gi|353800009|gb|EHD80323.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae NP170]
gi|353844493|gb|EHE24536.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41565]
gi|353902647|gb|EHE78175.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA11663]
gi|379553646|gb|EHZ18730.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13430]
gi|381309482|gb|EIC50315.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SV36]
gi|381317399|gb|EIC58124.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SV35]
gi|381319186|gb|EIC59902.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 459-5]
Length = 450
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 183/374 (48%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L VD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-DVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|118581691|ref|YP_902941.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter
propionicus DSM 2379]
gi|158512568|sp|A1AU63.1|MURD_PELPD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|118504401|gb|ABL00884.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter
propionicus DSM 2379]
Length = 446
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 106/379 (27%), Positives = 180/379 (47%), Gaps = 35/379 (9%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
++G ++SE++ A++ I ++A+TGTNGK+T T G + G FVGGN+GNPL
Sbjct: 90 EAGVEIISEIELASRFI--QAPLVAITGTNGKTTATTITGDIFIKNGFRTFVGGNIGNPL 147
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
E L S++P +V V E+SS+Q+E + F P V+ +LNL+ DHL+R+ + + Y
Sbjct: 148 IE------LLESAEPVERV-VAEISSFQLEWI-RAFRPAVAALLNLSEDHLDRYASYREY 199
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K +F + ++ ++ + E +G R L FP + E F
Sbjct: 200 IEAKLRIFENQTADDYAVVNADDELVMEHSRGLRACL-----FPFSR-KQELDEGIFHRE 253
Query: 203 AV------GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
+ G + ++ G HN N A L L+ E+L + +
Sbjct: 254 GLIVWRHNGREERFPTAGFRLQGVHNLENIMAALACSLLLECR-PTESL-ACVREFEALH 311
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK 316
HRM+ V R++ GV W +DSKATN+ + L ++ GG+ K G + +
Sbjct: 312 HRMEFV-RELNGVRWYEDSKATNVGSVEKALESFDA--ITLIAGGKDK---GGSYSPLSR 365
Query: 317 LIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLS 376
L+ H ++ G + + + L G A +++AV+ A + G +++S
Sbjct: 366 LVRERVRH--LVLIGEAAGRMQEEL---GTLTDTRRAATLEEAVSLAAELTAPGGTVLMS 420
Query: 377 PGCASFDEFRNFEHRGMVF 395
P C+SFD FR++E R +
Sbjct: 421 PACSSFDMFRDYEERAQRY 439
>gi|260655415|ref|ZP_05860903.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Jonquetella
anthropi E3_33 E1]
gi|424845227|ref|ZP_18269838.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Jonquetella
anthropi DSM 22815]
gi|260629863|gb|EEX48057.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Jonquetella
anthropi E3_33 E1]
gi|363986665|gb|EHM13495.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Jonquetella
anthropi DSM 22815]
Length = 438
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 119/378 (31%), Positives = 187/378 (49%), Gaps = 30/378 (7%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+ EL+F A +P K +AVTGTNGK+T +G +L G V GN+G PL+
Sbjct: 87 GIPVVGELEFLAPWLPG--KTIAVTGTNGKTTTTALLGHLLRCRGQSVAVVGNIGEPLAN 144
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
AA + V+E+SS+Q+ NK F P V+++ NL PDH++ H + +NY
Sbjct: 145 AAGTAV---------DYTVMELSSFQLHW-NKSFTPQVALLTNLAPDHIDWHGSYENYVA 194
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K +F ++ Q + A+ ++ +G G +I + + E +
Sbjct: 195 DKLKVFGRPGKGNWEIV----QARDAALVPSGGSVCTLGGTEGTRIYWDDQAVWLERDS- 249
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
G + ++G+HN NAA+A ++ +D L + L PPHR Q+V R
Sbjct: 250 GREKLFDRSQLSLVGQHNLENAAMAGAALALID--KSFAPLQGLSDFL-PPPHRCQLV-R 305
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN-H 323
+GVTWVDDSK TN+ +T T L + G K +I+LGG+ K +E L + +
Sbjct: 306 VRRGVTWVDDSKGTNVASTRTALEGIDGPK-IIILGGKGK------GEKYETLAQTVKAR 358
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 383
R VI G I L G+ + M++ V+ A +A GD ++LSP C S+D
Sbjct: 359 ARNVILIGAESDKIEAALREAGVQ-SIHRTSCMEEVVSTADGLARPGDTVLLSPACTSWD 417
Query: 384 EFRNFEHRGMVFQELAFS 401
++++E RG F+ L +
Sbjct: 418 MYQSYEQRGDHFKRLVMA 435
>gi|330446841|ref|ZP_08310492.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328491032|dbj|GAA04989.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 446
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 125/411 (30%), Positives = 202/411 (49%), Gaps = 54/411 (13%)
Query: 5 WLFLLEFQLKATGLACLL-------QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + G+A ++G ++ +++ A+ + + ++A+TG+NGKSTV
Sbjct: 65 WLLSADMIIASPGIALATPELVLAAEAGVEIIGDIELFAREVDK--PVVAITGSNGKSTV 122
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
+ VG+M GI+ VGGN+G AA +A + Q+ V+E+SS+Q+E +
Sbjct: 123 TSLVGEMAKEAGIDVGVGGNIGF----AALDMLA-----QQHQLYVLELSSFQLETTSSL 173
Query: 118 FCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR 176
T +V LNL+ DH++R+ + Y+ K +F H KL + F L A K +
Sbjct: 174 EL-TAAVYLNLSEDHMDRYPGGLAQYSQAKMRIFDH---AKLAV--FNRDDL--ATKPTQ 225
Query: 177 FNLAWIGAFPGVKIDTEA----KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALS 232
F+ GA D +A E V + + + ++ ++GRHN N A
Sbjct: 226 FS----GAMTSFGFDEQAYGIVSVDGKEWLVVNGEAVMAVADIALVGRHNVANCLAALAL 281
Query: 233 VLGLDIGVDVEALNSTIEILRTPPHRMQI-VHRDIQGVTWVDDSKATNLEATCTGL--MD 289
GV +A ++ HR Q+ V+R GV WV+DSKATNL +T L +
Sbjct: 282 ADA--AGVPRDASCRAMQHYTGLAHRCQLAVNR--HGVRWVNDSKATNLASTLAALNGLQ 337
Query: 290 LKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIP 349
L+G K +L+GG +K G E + + ++ LN + +FG L + + NN +S
Sbjct: 338 LEG-KLHLLMGGDSK---GAEFSELKPVLADLNVQ--LYSFGRDRHL-FDDVTNNVIS-- 388
Query: 350 CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAF 400
V M +A+ R +GD ++LSP CAS+D+F NF RG F E A
Sbjct: 389 ---VETMSEAMEQVSRTVQSGDMVLLSPACASWDQFANFMARGDAFVEQAI 436
>gi|126172652|ref|YP_001048801.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
baltica OS155]
gi|386339427|ref|YP_006035793.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
OS117]
gi|125995857|gb|ABN59932.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
OS155]
gi|334861828|gb|AEH12299.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
OS117]
Length = 439
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 116/385 (30%), Positives = 177/385 (45%), Gaps = 53/385 (13%)
Query: 25 GKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
G V+ +++ FA ++ R ++ +TG+NGKSTV T VG+M GI VGGN+G P
Sbjct: 90 GIEVIGDVELFAREIADRKPCVIGITGSNGKSTVTTLVGEMAREAGIAVAVGGNIGVP-- 147
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
AL + V+E+SS+Q+E + C V+ LN++ DH++R+ + Y
Sbjct: 148 -------ALDLLHENADLFVLELSSFQLETTHSLKC-VVATCLNISEDHMDRYSDIAAYR 199
Query: 144 LTKCHLFSHM------VNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
K L+ + KL + P E + + F LA D++
Sbjct: 200 EAKLRLYKQSRAVLFNRDDKLTVPP-------EPMNQNSFGLAAPETDEWGISDSKIYHG 252
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTP 255
S E+ + + + ++G HN+ N AA+A + V +GVD + +
Sbjct: 253 SSEI--------MPITEVSLIGSHNHANLLAAMALVDV----VGVDKQVMAKVARSFTGL 300
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKVLNGQESNG 313
HR ++V GVT+V+DSKATN+ AT L L H +++ GG K +
Sbjct: 301 SHRCEVVGIK-NGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDGKGAD------ 353
Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
F+ L L +IT G G I L V M AV A +AT+GD +
Sbjct: 354 FKPLGVALAKVTHLITLGRDGKKIA------ALKDGAVRVETMAAAVTKAAELATSGDIV 407
Query: 374 VLSPGCASFDEFRNFEHRGMVFQEL 398
+LSP CAS D + NF RG F+ L
Sbjct: 408 LLSPACASLDMYSNFMARGDDFRNL 432
>gi|417939990|ref|ZP_12583278.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
oralis SK313]
gi|343388871|gb|EGV01456.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
oralis SK313]
Length = 450
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 181/377 (48%), Gaps = 31/377 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQRGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ + M +L F NQ L + + + + K+D E
Sbjct: 203 YVAAKWNIQNKMTADDFLVLNF-NQDLAKEL-ATKTQATVVPFSTQEKVDGAYLEDGQLY 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F V S++ V G HN N A+A ++V L GVD + + T+ HR
Sbjct: 261 FRGEVVMAASEI-----GVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q V +IQGV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQFVD-EIQGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
+ + ++ G S + + + + ++ DA A +AT GD ++LSP
Sbjct: 367 PDIIGLKKMVILGQSAERVKRAA--DKADVAYVDATDIADATRKAYELATQGDVVLLSPA 424
Query: 379 CASFDEFRNFEHRGMVF 395
AS+D + NFE RG +F
Sbjct: 425 NASWDMYANFEVRGDLF 441
>gi|331268360|ref|YP_004394852.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
botulinum BKT015925]
gi|329124910|gb|AEB74855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
botulinum BKT015925]
Length = 458
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 114/391 (29%), Positives = 183/391 (46%), Gaps = 50/391 (12%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+SG + SE++ + P K+ +TG++GK+T T V ML G + +VGGN+GNPL
Sbjct: 99 ESGSYITSEMEEFIKYCPA--KVFGITGSDGKTTTTTLVYNMLKSEGYKTWVGGNIGNPL 156
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
A K V+E+SS+Q M I C ++V NL+P+HL+ HK M+
Sbjct: 157 -------FANIEEMTKADKVVLELSSFQLMTIKEDMNC---ALVTNLSPNHLDIHKDMEE 206
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT-ASFE 200
Y K ++F + L +L N+ N+ + + G I E A F+
Sbjct: 207 YVDAKKNIFKYQNENDLLVLNKDNKITNDLVNEAK------GKVKQFSIKEEIHNGAYFK 260
Query: 201 VPAVGVVSQ--LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
+ ++ + L +K+ G HN N +AA ++ D+ ++ + HR
Sbjct: 261 NDKLFILDKEVCALEEIKLKGMHNVENL-LAAFCLVNEDVSIN--NMRKVAISFTGVEHR 317
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+ V R++ GV + +DS A++ T GL K VIL+ G G++K I
Sbjct: 318 CEFV-RELDGVKYYNDSIASSPTRTIAGLRAF--EKPVILIAG-----------GYDKHI 363
Query: 319 --EPLNHH-----RCVITFGYSGVLIWKT----LVNNGLSIPCFAVANMKDAVNHARRMA 367
EPL + +I G + I K + N IP + V ++A+ A+ ++
Sbjct: 364 PFEPLAEEGYDKIKALILTGVTKEKIKKAFDNVIENKPYKIPIYMVERFEEAIYKAKEIS 423
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
GD + LSP CASFD F NFE RG F+++
Sbjct: 424 KAGDIVTLSPACASFDMFANFEIRGNKFKDI 454
>gi|51473598|ref|YP_067355.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
typhi str. Wilmington]
gi|383752377|ref|YP_005427477.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
typhi str. TH1527]
gi|383843214|ref|YP_005423717.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
typhi str. B9991CWPP]
gi|60390366|sp|Q68WW9.1|MURD_RICTY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|51459910|gb|AAU03873.1| D-glutamate ligase [Rickettsia typhi str. Wilmington]
gi|380759020|gb|AFE54255.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
typhi str. TH1527]
gi|380759861|gb|AFE55095.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
typhi str. B9991CWPP]
Length = 457
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 108/379 (28%), Positives = 187/379 (49%), Gaps = 35/379 (9%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
++S++D + +++K +A+TGTNGKST + +LN G++ V GN+G P +A
Sbjct: 90 IISDIDLLFEK-SKNLKFIAITGTNGKSTTAALISHILNSNGLDYTVAGNIGVPALQA-- 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+SK + V+E+SS+Q+++ K F V+V+LN+TPDHL+R++ M Y K
Sbjct: 147 -----KASKDGY---VLELSSFQLDLV-KIFTVKVAVLLNITPDHLDRYQDMNGYIAAKA 197
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEA-IKGHRFNLAWIGAFPGVKI-DTEAKTASFEVPAVG 205
+F M ++ N + + + R L + F KI + ++
Sbjct: 198 KIFDRMDKDSYAVINIDNDYCRKIFLLLQREQLIKLIPFSVTKILNNGISIVDDKIHDNN 257
Query: 206 VVSQLQLHNMKVMGRHNYHN-AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+ +L L N + G HN N AA A+S + IGV+ + + +I ++ HRMQ +
Sbjct: 258 LTYKLPL-NKNLQGLHNCENIAASYAVSKI---IGVESKKILESISSFQSLHHRMQYIGS 313
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH 324
I +++ +DSKATN + L +K + L G + G E + N
Sbjct: 314 -INNISFYNDSKATN---AISALQSIKALDNIYWLAGGI-----PKEGGIEGIKPYFNKI 364
Query: 325 RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA----IVLSPGCA 380
+ +G + + T N I C N++ A N A + A + + I+L+P C+
Sbjct: 365 KKAYFYGQAKTMFANTAKN---IIDCVICDNLEYAFNIAYKDAVSDNTEIKNILLAPSCS 421
Query: 381 SFDEFRNFEHRGMVFQELA 399
S+D+F+NFE RG +F +L+
Sbjct: 422 SYDQFKNFEERGELFIKLS 440
>gi|15900589|ref|NP_345193.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae TIGR4]
gi|111658685|ref|ZP_01409328.1| hypothetical protein SpneT_02000191 [Streptococcus pneumoniae
TIGR4]
gi|418129856|ref|ZP_12766740.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA07643]
gi|418186697|ref|ZP_12823227.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47360]
gi|418229426|ref|ZP_12856035.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae EU-NP01]
gi|419477355|ref|ZP_14017180.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA18068]
gi|421210651|ref|ZP_15667640.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070035]
gi|421242682|ref|ZP_15699204.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2081074]
gi|421246941|ref|ZP_15703429.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2082170]
gi|421270111|ref|ZP_15720968.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SPAR48]
gi|30316108|sp|Q97RU8.1|MURD_STRPN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|14972164|gb|AAK74833.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae TIGR4]
gi|353803148|gb|EHD83440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA07643]
gi|353853283|gb|EHE33266.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47360]
gi|353890565|gb|EHE70328.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae EU-NP01]
gi|379566737|gb|EHZ31724.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA18068]
gi|395575021|gb|EJG35593.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070035]
gi|395610002|gb|EJG70083.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2081074]
gi|395615097|gb|EJG75114.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2082170]
gi|395870763|gb|EJG81876.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SPAR48]
Length = 450
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 183/374 (48%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L VD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-DVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|410644638|ref|ZP_11355114.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Glaciecola
agarilytica NO2]
gi|410135812|dbj|GAC03513.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Glaciecola
agarilytica NO2]
Length = 441
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 114/398 (28%), Positives = 181/398 (45%), Gaps = 53/398 (13%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
L+ + +++G +V+ +++ A + +LAVTG+NGKSTV T +M G
Sbjct: 73 LSLQTAAIQEAIEAGVQVVGDIELFAMF--NNTPVLAVTGSNGKSTVATLAYEMCMAGGK 130
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTP 130
+A +GGN+G P AL + + V+E+SS+Q+E P V+ +LNL+
Sbjct: 131 KALLGGNIGTP---------ALELLEKDADIIVLELSSFQLE-STHTLRPLVACMLNLSD 180
Query: 131 DHLERHKTMKNYALTKCHL-----FSHMVNTKLGLLPFG-NQHLNEAIKGHRFNLAWIGA 184
DHL+RH M +Y K + FS P N + + L+W
Sbjct: 181 DHLDRHGDMLSYQRAKLRIYKDARFSVCNRDDAATWPMTINPDVMFGLSSSERGLSWDKD 240
Query: 185 FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
+ +D +A L ++G HN N + A + + + G+++EA
Sbjct: 241 TAQLLLDGKA--------------YLDSQACMLVGEHNMLN--IQAATAMTMLAGIELEA 284
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLG 300
+ S HR Q V V W++DSKATN+ AT + L KG K +++ G
Sbjct: 285 IKSAAMNFAGLAHRCQTVAMS-SNVRWINDSKATNVGATIAAIDGLAPTCKG-KLILIAG 342
Query: 301 GQAKVLNGQESNGFEKLIEPLNHHRC-VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDA 359
G K + F L E NH +IT G G + K L V N++DA
Sbjct: 343 GDGKGAD------FSPLEERFNHQVSELITLGKDGPELAK------LKPSSHQVVNLEDA 390
Query: 360 VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
V A +A+ ++LSP CAS D F+N++ RG +F++
Sbjct: 391 VQLAASLASKDSTVLLSPACASLDMFKNYQQRGELFEQ 428
>gi|365842362|ref|ZP_09383384.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Flavonifractor
plautii ATCC 29863]
gi|364575892|gb|EHM53253.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Flavonifractor
plautii ATCC 29863]
Length = 479
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 121/402 (30%), Positives = 191/402 (47%), Gaps = 64/402 (15%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G + SE++ QV P K +AVTG++GK+T T + ++L G +VGGN+G PL
Sbjct: 115 ERGSTITSEMEVFFQVCP--CKTIAVTGSDGKTTTTTIIAELLKAAGQSVYVGGNIGKPL 172
Query: 83 SEAAFHCIALPSSK---PKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTM 139
LP P+ VAV+E+SS+Q+ + P ++VV NL P+HL+ HK+M
Sbjct: 173 ---------LPDVDGMVPE-DVAVLELSSFQLMTMEQ--SPDIAVVTNLAPNHLDVHKSM 220
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
+ Y K ++F+H L +L NQ NE +G F ++ G E + F
Sbjct: 221 EEYIAAKENIFTHQGADGLLVL---NQD-NEITRG--FAVSARGRVTRFSRREELEQGVF 274
Query: 200 EVPAVGVVSQ-------LQLHNMKVMGRHNYHN--AAVAALSVLGLDIGV-DVEALNSTI 249
V L L N+ + G HN N AA+ AL L D V D A + +
Sbjct: 275 VRDGAIWVRNAMHERPVLYLENILLPGEHNIENYMAAIGALDGLVPDQVVRDFAAKFAGV 334
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
E HR+++V R GV + +DS A++ T GL H+ V+L+ G
Sbjct: 335 E------HRIELV-RTRNGVRYYNDSIASSPSRTIAGLRSF--HQKVVLIAG-------- 377
Query: 310 ESNGFEKLI-------EPLNHHRCVITFGYSGVLIWKTLVN----NGLSIPCFAVANMKD 358
G++K I E + H + ++ G + + + + + ++P + +
Sbjct: 378 ---GYDKHIPFDVLGPEVVEHVKALVLTGDTAPKLRQAVERAPGYDPAALPIVEYKDFEA 434
Query: 359 AVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAF 400
AV A +A GD ++LSP CASFD F+NF RG F+ + +
Sbjct: 435 AVLAACGLAQPGDVVLLSPACASFDRFKNFMERGAAFKRIIY 476
>gi|418193336|ref|ZP_12829829.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47439]
gi|353860059|gb|EHE40006.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47439]
Length = 450
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 183/374 (48%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVIPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L VD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-DVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|422590148|ref|ZP_16664805.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. morsprunorum str. M302280]
gi|330877135|gb|EGH11284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. morsprunorum str. M302280]
Length = 448
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 115/370 (31%), Positives = 179/370 (48%), Gaps = 55/370 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + VS+L
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKFLAFQFDNLMPVSEL-- 268
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
KV G HN A A LG +G+ +A+ +++ HR Q + R+ GV +
Sbjct: 269 ---KVRGAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL-RERNGVDYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCV 327
+DSKATN+ A + D+ G K V++ GG K + F L P+ + R
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGAD------FSGLRAPVAQYCRAA 375
Query: 328 ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ G LI + L G ++P V ++ A + +A +GDA++LSP CAS D F+N
Sbjct: 376 VLLGRDAELIAQAL---GDAVPLIRVDTVQAAAERSAELAQHGDAVLLSPACASLDMFKN 432
Query: 388 FEHRGMVFQE 397
+E RG VF +
Sbjct: 433 YEERGRVFAQ 442
>gi|422596836|ref|ZP_16671115.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. lachrymans str. M301315]
gi|330987132|gb|EGH85235.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. lachrymans str. M301315]
Length = 448
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 114/370 (30%), Positives = 178/370 (48%), Gaps = 55/370 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + + +
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKYLAFQFENL-----MPV 265
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
+KV G HN A A LG +G+ +A+ +++ HR Q + R+ GV +
Sbjct: 266 RELKVRGAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL-REHDGVHYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCV 327
+DSKATN+ A + D+ G K V++ GG K + F L P+ H R
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGAD------FSALRAPVAEHCRAA 375
Query: 328 ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ G LI + L G ++ V ++ AV + R+A GDA++LSP CAS D F+N
Sbjct: 376 VLLGRDAELIAQAL---GDAVTLVRVETVQAAVEQSARLAQRGDAVLLSPACASLDMFKN 432
Query: 388 FEHRGMVFQE 397
+E RG VF +
Sbjct: 433 YEERGRVFAQ 442
>gi|427736837|ref|YP_007056381.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rivularia sp. PCC
7116]
gi|427371878|gb|AFY55834.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rivularia sp. PCC
7116]
Length = 469
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 119/402 (29%), Positives = 195/402 (48%), Gaps = 51/402 (12%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G + E++ A + + SI +AVTGTNGK+TV + +G + G+ A GN+G
Sbjct: 87 KKGIETVGEMELAWRNLG-SIPWVAVTGTNGKTTVTSLIGAIFQTAGLNAPTCGNIGLAA 145
Query: 83 SEAAFH--------CIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLE 134
+E A + PSS + + E+SSYQ+E + P + + LTPDHL
Sbjct: 146 TEIALEDKQRGQNSSPSSPSSPSNLEWIIAELSSYQIESSDS-LSPKIGIWTTLTPDHLA 204
Query: 135 RHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNE------------AIKGHRFNLAWI 182
RHKT++NY K L +++ + N +L + +IKG L
Sbjct: 205 RHKTVENYYSIKARLLKR---SQMQVFNADNPYLRKVGETDWQDAYWTSIKGKDNLLTGK 261
Query: 183 GAF--PGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDI 238
G + G ++T+ T++ E + VS L++ +G HN N +VAA +
Sbjct: 262 GFYIEDGWVVETQI-TSTSEDQKIMPVSALRM-----VGEHNLQNLLLSVAAARL----A 311
Query: 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL 298
G++ A++ I PHR++ + R I+G+ +++DSKATN +A GL +K +++
Sbjct: 312 GIEKSAIHQAISEFSGVPHRLEHI-RTIEGIDFINDSKATNYDAAEVGLASVK-SPAILI 369
Query: 299 LGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMK 357
GG AK N + I+ + V+ G + + K G S + M+
Sbjct: 370 AGGAAKAGNDK------PWIDQIKQKAAAVLLIGDAAPVFAKRFEEEGYS-NYEDMGTME 422
Query: 358 DAVNHARRMATNGDA--IVLSPGCASFDEFRNFEHRGMVFQE 397
AV H ++A DA ++LSP CASFD++ NFE RG F++
Sbjct: 423 KAVTHGLKLAKQHDAKVVLLSPACASFDQYANFEVRGDDFRK 464
>gi|313203975|ref|YP_004042632.1| UDP-N-acetylmuramoylalanine--d-glutamate ligase [Paludibacter
propionicigenes WB4]
gi|312443291|gb|ADQ79647.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paludibacter
propionicigenes WB4]
Length = 444
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/390 (27%), Positives = 198/390 (50%), Gaps = 33/390 (8%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G V+SE++FA + K++ +TG+NGK+T V +L + G++
Sbjct: 75 KAPLVKKLHELGTSVISEIEFAGRYT--KAKMICITGSNGKTTTTMLVYHILKNAGLKVG 132
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHL 133
+ GN+G L AL + F VVE+SS+Q++ + F ++++LN+TPDHL
Sbjct: 133 LAGNVGQSL--------ALQVATDTFDYYVVELSSFQLDGMTE-FKADIAILLNITPDHL 183
Query: 134 ERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT 192
+R++ +NY +K + + + + N + +A R + + F I+
Sbjct: 184 DRYEYNFQNYVDSKFRITQNQTEED-SFIFWENDPVIKAELAKRKIQSTMYPFS---IER 239
Query: 193 EAKTASFEVPAVGVVSQLQL------HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
+T +F ++ L+ ++ + G HN +N+ A L+ + V E++
Sbjct: 240 SERTKAFIEQDELIIKTLKTLFTMPTTDLALQGMHNTYNSMAAGLA--ASIVNVRKESIR 297
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVL 306
+++ + HR++ V ++ + +V+DSKATN+ + L +K V++LGG K
Sbjct: 298 QSLQDFQGVEHRLEYVAT-VKNIRFVNDSKATNVNSCWYALQSMKT-PVVLILGGTDK-- 353
Query: 307 NGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRM 366
G + + E+L++ + + +I G + K +G V +M+DAV A +
Sbjct: 354 -GNDYSEIEELVKA--NVKALIFMGLDNSPLHKFF--DGKIERIVDVQSMEDAVKEAYGL 408
Query: 367 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
A +GD ++LSP CASFD F+N+E RG F+
Sbjct: 409 AESGDTVLLSPCCASFDLFKNYEDRGQQFK 438
>gi|405983693|ref|ZP_11041998.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Slackia piriformis
YIT 12062]
gi|404388508|gb|EJZ83590.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Slackia piriformis
YIT 12062]
Length = 485
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 128/397 (32%), Positives = 195/397 (49%), Gaps = 44/397 (11%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
++ V+SE++FA + +AVTGTNGK+T T + +L G GN+G
Sbjct: 103 EASASVISEVEFAWRESRADSSWIAVTGTNGKTTTTTLITHILETAGKRVAAVGNIGTT- 161
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
CI +S V V EVSS+Q+ + F P V+V+LN+TPDHL H T Y
Sbjct: 162 ------CIESVASDAA-DVYVAEVSSFQLASMD-LFAPQVAVLLNITPDHLYWHMTFDAY 213
Query: 143 ALTKCHLFSHMVNTKLGLL-----PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
A K +++ H+ +T L+ + E + ++I G +D A
Sbjct: 214 AEAKKNIYRHLDDTHGTLVIDAVCDVTRACVKEFKEKTERGFSYIPLGCGAGLDCSMIDA 273
Query: 198 ----------------SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD 241
++ +V +V+ LH + G HN NA AA + L GV
Sbjct: 274 CGSENAAWLSDGMLHVDYKGESVDLVAASSLH---IKGEHNASNALAAASAALAA--GVA 328
Query: 242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG 301
E + + + HR++ DI GV++ DDSKATN++ATC L + LLGG
Sbjct: 329 PEVVRRGLRSFKPLEHRLEPCG-DIAGVSFFDDSKATNVDATCKALSAFPKGSAIFLLGG 387
Query: 302 QAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVN 361
K G E ++L+E + R ++ FG +G ++ L + L IP +M+DA++
Sbjct: 388 HDK---GTE---LDELVEAASVCRAIVCFGAAGQRFFEAL--SPLDIPVELADHMEDALD 439
Query: 362 HARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
A +A G+++VLSP CASFDEF +FEHRG VF++L
Sbjct: 440 RAIALAQPGNSVVLSPACASFDEFDSFEHRGRVFKQL 476
>gi|158320410|ref|YP_001512917.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Alkaliphilus
oremlandii OhILAs]
gi|167017286|sp|A8MH34.1|MURD_ALKOO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|158140609|gb|ABW18921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkaliphilus
oremlandii OhILAs]
Length = 454
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 118/386 (30%), Positives = 194/386 (50%), Gaps = 35/386 (9%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G ++ E++ A ++ I +A+TGTNGK+T + VG++ + G V GN+G
Sbjct: 90 LRARGIEIIGEIELAYRLAQGHI--VAITGTNGKTTTTSLVGEIFKNAGRRTHVVGNIG- 146
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTM 139
AF AL ++ V V+E SS+Q+E I + F P V +LNLTPDHL RHKTM
Sbjct: 147 ----VAFISKALETTAD--DVIVIEASSFQLESIVD--FRPQVGAILNLTPDHLNRHKTM 198
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF----PGVKIDTEAK 195
+NY K ++F + + ++ + + L E K + GV ++
Sbjct: 199 ENYQKAKFNIFKNQGAEDIAVINYDDVKLREESKQIYAKKVYFSRRTLLEEGVFVEDGKI 258
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
A + ++S+ ++ + G HN NA A + + L +GVD++ + T++ +
Sbjct: 259 VALKDGHKKEIISK---DDIFIPGNHNLENALAA--TAMTLSLGVDIDVIQHTLKTFKGV 313
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL--GGQAKVLNGQESNG 313
HR +IV I GV +++DSK TN +A+ G ++G ILL GG K +
Sbjct: 314 EHRTEIVDV-IHGVRFINDSKGTNPDASIKG---IEGINTPILLIAGGYDK------GSD 363
Query: 314 FEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 372
F++ I + + + +G + + +T I V N+ +AV A +A GD
Sbjct: 364 FDEFINAFDGKVKHMFVYGETANTLMETAKKLNF-IDVTKVQNLDEAVKKAYDIAIQGDT 422
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQEL 398
++LSP CAS+D + NFE RG F+E+
Sbjct: 423 VLLSPACASWDMYENFEMRGKHFKEI 448
>gi|423301213|ref|ZP_17279237.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
finegoldii CL09T03C10]
gi|408471814|gb|EKJ90343.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
finegoldii CL09T03C10]
Length = 444
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 111/396 (28%), Positives = 192/396 (48%), Gaps = 57/396 (14%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKAQGTPVISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEDHHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHL-NEAIKGHRFNLAWI---GAFPGVKI 190
M+NY K + + + P + L +K H + A + GA V+
Sbjct: 190 MQNYIDAKFRITQNQTPDDAFIFWNDDPIIKRELAKHGLKAHLYPFAAVKEDGAIAYVE- 248
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTI 249
D E K + ++ + + G+HN +N+ A +S L G+ E + +
Sbjct: 249 DHEVKINE------PIAFNMEQEELALTGQHNLYNSLAAGISANLA---GITKENIRKAL 299
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
+ HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K
Sbjct: 300 SDFKGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK----- 352
Query: 310 ESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGL-------SIPCFAV-ANMKDAVN 361
N + + IE L +C L++ L N L +P V MKDAV
Sbjct: 353 -GNDYTE-IEDLVREKC-------SALVYMGLHNEKLHDFFDRFGLPVADVQTGMKDAVE 403
Query: 362 HARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
A ++A G+ ++LSP CASFD F+++E RG F+E
Sbjct: 404 AAYKLAKKGETVLLSPCCASFDLFKSYEDRGEQFKE 439
>gi|194397716|ref|YP_002037343.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae G54]
gi|418120774|ref|ZP_12757720.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44194]
gi|419442180|ref|ZP_13982211.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13224]
gi|419490626|ref|ZP_14030366.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47179]
gi|419531934|ref|ZP_14071452.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47794]
gi|421274608|ref|ZP_15725440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA52612]
gi|226722946|sp|B5E2Z8.1|MURD_STRP4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|4009480|gb|AAC95449.1| D-glutamic acid adding enzyme MurD [Streptococcus pneumoniae G54]
gi|194357383|gb|ACF55831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae G54]
gi|353793601|gb|EHD73960.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44194]
gi|379554147|gb|EHZ19227.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13224]
gi|379594205|gb|EHZ59015.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47179]
gi|379608690|gb|EHZ73435.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47794]
gi|395875336|gb|EJG86417.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA52612]
Length = 450
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 184/374 (49%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + + K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIATDK---NTLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGLFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLVKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|317472438|ref|ZP_07931762.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Anaerostipes sp.
3_2_56FAA]
gi|316900082|gb|EFV22072.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Anaerostipes sp.
3_2_56FAA]
Length = 454
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 114/380 (30%), Positives = 194/380 (51%), Gaps = 25/380 (6%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
+ SG+ V SE++ A QV +I A+TGTNGK+T VG+++ + +V GN+G
Sbjct: 89 FMDSGRPVWSEIELAYQV--SRGQIAAITGTNGKTTTTALVGEIMKCFYSDVYVVGNIGT 146
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P + +AL + + V E+SS+Q+E FCP VS VLN+TPDHL+RH T++
Sbjct: 147 P-----YTSVALDTKDE--SIIVAEISSFQLETIQD-FCPKVSAVLNITPDHLDRHGTVE 198
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFE 200
YA TK + + ++ +L + + + + + ++ K SF
Sbjct: 199 VYAKTKESIGKNQTGDQVMVLNYEDPVTRNMAERANARVVFFSLDHELEEGVYFKDGSFM 258
Query: 201 VPAVGVVSQLQLH-NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ V + ++ ++G HNY N +AA++V +GV E + + + HR+
Sbjct: 259 LAENKTVQTICTEADINLLGGHNYEN-ILAAIAVSHY-MGVPAEQIRKGVSGFKGVEHRI 316
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG-FEKLI 318
+ V I+ V + +DSK TN +A G+ + ++ L+GG G + ++ I
Sbjct: 317 EYVDT-IKDVAYYNDSKGTNTDAAIKGIKAM--NRPTFLIGG------GYDKKAEYDDWI 367
Query: 319 EPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
E + + +I G + I KT +G S + V +++AV +A + A +GDA++LSP
Sbjct: 368 EAFDGKVKELILLGATAEKIGKTAEAHGFSRIVY-VDTLEEAVEYASKHAVSGDAVLLSP 426
Query: 378 GCASFDEFRNFEHRGMVFQE 397
CAS+ F N+E RG F+E
Sbjct: 427 ACASWGMFPNYEVRGDRFKE 446
>gi|148989060|ref|ZP_01820460.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP6-BS73]
gi|147925557|gb|EDK76634.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP6-BS73]
Length = 434
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 183/374 (48%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 77 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 134
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 135 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 186
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 187 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDGAYLEDGQL 243
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L VD + + T+ HR+Q
Sbjct: 244 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-DVDNQTIKETLSAFGGVKHRLQF 300
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 301 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 353
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 354 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANAS 411
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 412 WDMYANFEVRGDLF 425
>gi|256372027|ref|YP_003109851.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidimicrobium
ferrooxidans DSM 10331]
gi|256008611|gb|ACU54178.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidimicrobium
ferrooxidans DSM 10331]
Length = 437
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 116/359 (32%), Positives = 167/359 (46%), Gaps = 45/359 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I AVTGTNGKSTV T ML G A GNLG PLS A S + VV
Sbjct: 107 ITAVTGTNGKSTVTTLTASML---GDGAVAAGNLGTPLSAVA------DSGARRL---VV 154
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
EVSS+Q+ + F +V+ VLNLTP+HL+ H + + Y K L + + + P G
Sbjct: 155 EVSSFQL-VWAPTFRASVATVLNLTPNHLDYHGSFEAYRAAKARLIERLAPGDVAVWPVG 213
Query: 165 NQHLNEAIKGHRFNLAWIGAFP-GVKIDT---EAKTASFEVPAVGVV--SQLQLHNMKVM 218
++ AI A P GV++ T A+ A + V +V L ++ +
Sbjct: 214 EGAVD-AI-----------AIPRGVEVRTFSATARDADYRVEHGALVGPDGRTLVRVEEL 261
Query: 219 GRHNYHNAA-VAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
GR H+ A + A L G ++E R HR+Q+V G+T+VDDSKA
Sbjct: 262 GRRAPHDVANMLAAWALAEASGAELERARRVAREFRGLAHRLQVVAVR-GGLTYVDDSKA 320
Query: 278 TNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLI 337
T EA + + V++ GG+ K GFE+L + V+ G S
Sbjct: 321 TTPEAAVAAVRSF--DRVVLIAGGRTK------GTGFERLRDVAERIAGVVAIGESA--- 369
Query: 338 WKTLVNNGLSIPCFAVAN-MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
+ + + G ++P AN M +AV A A G ++L+P S+D +R+FE RG F
Sbjct: 370 HRVVADLGDAVPWIVEANSMDEAVAVASERALPGTVVLLAPAATSWDWYRSFEERGEDF 428
>gi|226313426|ref|YP_002773320.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus
brevis NBRC 100599]
gi|226096374|dbj|BAH44816.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus
brevis NBRC 100599]
Length = 454
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 114/387 (29%), Positives = 191/387 (49%), Gaps = 49/387 (12%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V++E++ A+Q+ I+ +TG+NGK+T T VG + G++A VGGN+G L
Sbjct: 93 GIPVVTEVELASQI--AKAPIIGITGSNGKTTTTTLVGLIFKEAGLDAKVGGNIGTVL-- 148
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
C + P + V E+SS+Q+ + + F P + V+LNL P HL+ H TM+ Y
Sbjct: 149 ----CGLAEEAGPD-EWLVAELSSFQL-MGTRKFRPHIGVLLNLYPAHLDYHHTMEEYLA 202
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--------GAF--PGVKIDTEA 194
K +F++ +LP+ + E K ++ + GAF G+ + +
Sbjct: 203 AKLKMFANQTADDAAILPYDQPEIVEKCKDLPASIYYFSKSQEVPKGAFVKDGLILFADG 262
Query: 195 KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
+ + A+ ++ L N A+AA+ V L G D + S I++L T
Sbjct: 263 NGNTEPIVAIADITVPHLDN------------ALAAILVAKL-AGADKQ---SIIQVLTT 306
Query: 255 PP---HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQES 311
P HRM+ V I+GV + +DSKATN EA L K V + GG + ++
Sbjct: 307 FPGVEHRMEFVD-SIRGVKYFNDSKATNPEAASRALQACK-EPVVWICGGLDRGVD---- 360
Query: 312 NGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 370
F +L+ + + VI G + ++ + G++ V ++ AV A ++A +G
Sbjct: 361 --FRELLPVIQGRVKAVIALGQTAPILLERAQEAGIN-ERIHVDTVEKAVLAASQLAESG 417
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVFQE 397
D ++LSP CAS+D F +FE RG +F++
Sbjct: 418 DVVLLSPACASWDMFPSFETRGSMFKD 444
>gi|410642379|ref|ZP_11352891.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Glaciecola
chathamensis S18K6]
gi|410138051|dbj|GAC11078.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Glaciecola
chathamensis S18K6]
Length = 441
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 114/398 (28%), Positives = 181/398 (45%), Gaps = 53/398 (13%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
L+ + +++G +V+ +++ A + +LAVTG+NGKSTV T +M G
Sbjct: 73 LSLQTAAIQEAIEAGVQVVGDIELFAMF--NNTPVLAVTGSNGKSTVATLAYEMCIAGGK 130
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTP 130
+A +GGN+G P AL + + V+E+SS+Q+E P V+ +LNL+
Sbjct: 131 KALLGGNIGTP---------ALELLEKDADIIVLELSSFQLE-STHTLRPLVACMLNLSD 180
Query: 131 DHLERHKTMKNYALTKCHL-----FSHMVNTKLGLLPFG-NQHLNEAIKGHRFNLAWIGA 184
DHL+RH M +Y K + FS P N + + L+W
Sbjct: 181 DHLDRHGDMLSYQRAKLRIYKDARFSVCNRDDAATWPMTINPDVMFGLSSSERGLSWDKD 240
Query: 185 FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
+ +D +A L ++G HN N + A + + + G+++EA
Sbjct: 241 TAQLLLDGKA--------------YLDSQACMLVGEHNMLN--IQAATAMTMLAGIELEA 284
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLG 300
+ S HR Q V V W++DSKATN+ AT + L KG K +++ G
Sbjct: 285 IKSAAMNFAGLAHRCQTVAMS-SNVRWINDSKATNVGATIAAIDGLAPTCKG-KLILIAG 342
Query: 301 GQAKVLNGQESNGFEKLIEPLNHHRC-VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDA 359
G K + F L E NH +IT G G + K L V N++DA
Sbjct: 343 GDGKGAD------FSPLEERFNHQVSELITLGKDGPELAK------LKPSSHQVVNLEDA 390
Query: 360 VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
V A +A+ ++LSP CAS D F+N++ RG +F++
Sbjct: 391 VQLAASLASKDSTVLLSPACASLDMFKNYQQRGELFEQ 428
>gi|422650972|ref|ZP_16713772.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. actinidiae str. M302091]
gi|330964055|gb|EGH64315.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. actinidiae str. M302091]
Length = 448
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 115/370 (31%), Positives = 179/370 (48%), Gaps = 55/370 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGPP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + VS+L
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKFLAFQFDNLMPVSEL-- 268
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
KV G HN A A LG +G+ +A+ +++ HR Q + R+ GV +
Sbjct: 269 ---KVRGAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL-RERNGVDYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCV 327
+DSKATN+ A + D+ G K V++ GG K + F L P+ + R
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGAD------FSGLRAPVAQYCRAA 375
Query: 328 ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ G LI + L G ++P V ++ A + +A +GDA++LSP CAS D F+N
Sbjct: 376 VLLGRDAELIAQAL---GDAVPLIRVDTLQAAAERSAELAQHGDAVLLSPACASLDMFKN 432
Query: 388 FEHRGMVFQE 397
+E RG VF +
Sbjct: 433 YEERGRVFAQ 442
>gi|399052145|ref|ZP_10741710.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus sp.
CF112]
gi|398050011|gb|EJL42401.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus sp.
CF112]
Length = 454
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 115/384 (29%), Positives = 189/384 (49%), Gaps = 49/384 (12%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A+Q+ I+ +TG+NGK+T T VGQ+L G++ VGGN+G L
Sbjct: 96 VVTEVELASQI--AKAPIIGITGSNGKTTTTTLVGQILKEAGLDVLVGGNIGTVL----- 148
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
C + P Q V E+SS+Q+ + + F P + V+LNL P HL+ H TM+ Y K
Sbjct: 149 -CGLAEEAGPD-QWLVAELSSFQL-MGTREFRPHIGVLLNLYPAHLDYHHTMEAYLDAKL 205
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--------GAF--PGVKIDTEAKTA 197
+F++ + +LPF + + + GAF GV T+ +
Sbjct: 206 KMFANQTADDIAILPFDQPEILAKCGELPARVYYFSKTQQVPRGAFVQDGVIRFTDGQGQ 265
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP- 256
S ++ AV ++ L N A+AA+ V L G + A+ +++L T P
Sbjct: 266 SEDIIAVADMTVPHLDN------------ALAAILVAKL-AGANTSAI---VQVLSTFPG 309
Query: 257 --HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGF 314
HRM+ V I GV + +DSKATN EA L + V + GG + ++ F
Sbjct: 310 VEHRMEYVD-SIAGVKYYNDSKATNPEAASRALQACQ-EPVVWICGGLDRGVD------F 361
Query: 315 EKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
+L+ + + V+ G + ++ G++ V ++ AV A R+A +GD +
Sbjct: 362 RELLPVMKGRVKAVVALGQTAPILLARAEEAGIN-ERIHVDTVEKAVLAASRLAQSGDVV 420
Query: 374 VLSPGCASFDEFRNFEHRGMVFQE 397
+LSP CAS+D F +FE RG +F++
Sbjct: 421 LLSPACASWDMFPSFEVRGSMFKD 444
>gi|373115289|ref|ZP_09529465.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
bacterium 7_1_58FAA]
gi|371670581|gb|EHO35660.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
bacterium 7_1_58FAA]
Length = 462
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 121/402 (30%), Positives = 191/402 (47%), Gaps = 64/402 (15%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G + SE++ QV P K +AVTG++GK+T T + ++L G +VGGN+G PL
Sbjct: 98 ERGSTITSEMEVFFQVCP--CKTIAVTGSDGKTTTTTIIAELLKAAGQSVYVGGNIGKPL 155
Query: 83 SEAAFHCIALPSSK---PKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTM 139
LP P+ VAV+E+SS+Q+ + P ++VV NL P+HL+ HK+M
Sbjct: 156 ---------LPDVDGMVPE-DVAVLELSSFQLMTMEQ--SPDIAVVTNLAPNHLDVHKSM 203
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
+ Y K ++F+H L +L NQ NE +G F ++ G E + F
Sbjct: 204 EEYIAAKENIFTHQGADGLLVL---NQD-NEITRG--FAVSARGRVTRFSRREELEQGVF 257
Query: 200 EVPAVGVVSQ-------LQLHNMKVMGRHNYHN--AAVAALSVLGLDIGV-DVEALNSTI 249
V L L N+ + G HN N AA+ AL L D V D A + +
Sbjct: 258 VRDGAIWVRNAMHERPVLYLENILLPGEHNIENYMAAIGALDGLVPDQVVRDFAAKFAGV 317
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
E HR+++V R GV + +DS A++ T GL H+ V+L+ G
Sbjct: 318 E------HRIELV-RTRNGVRYYNDSIASSPSRTIAGLRSF--HQKVVLIAG-------- 360
Query: 310 ESNGFEKLI-------EPLNHHRCVITFGYSGVLIWKTLVN----NGLSIPCFAVANMKD 358
G++K I E + H + ++ G + + + + + ++P + +
Sbjct: 361 ---GYDKHIPFDVLGPEVVEHVKALVLTGDTAPKLRQAVERAPGYDPAALPIVEYKDFEA 417
Query: 359 AVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAF 400
AV A +A GD ++LSP CASFD F+NF RG F+ + +
Sbjct: 418 AVLAACGLAQPGDVVLLSPACASFDRFKNFMERGAAFKRIIY 459
>gi|417793528|ref|ZP_12440803.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
oralis SK255]
gi|334272813|gb|EGL91170.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
oralis SK255]
Length = 450
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 106/378 (28%), Positives = 183/378 (48%), Gaps = 33/378 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEA 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K ++ ++M +L F NQ L + + + + G G + E
Sbjct: 203 YVAAKWNIQNNMAAADFLVLNF-NQDLAKELATKTQATVVPFSTKGKVDGAYL--ENGQL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F V S++ V G HN N A+A ++V L GVD + + T+ H
Sbjct: 260 YFRGEVVMTASEI-----GVPGSHNVEN-ALATIAVAKLR-GVDNQIIKETLSAFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R+Q V +I+GV + +DSK+TN+ AT L K +++ GG + N F++L
Sbjct: 313 RLQFVD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDEL 365
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
+ + + ++ G S + + G++ ++ DA A +AT GD ++LSP
Sbjct: 366 VPDITGLKKMVILGQSAERVKRAAEKAGVT--YVDATDIADATRKAYELATQGDVVLLSP 423
Query: 378 GCASFDEFRNFEHRGMVF 395
AS+D + NFE RG +F
Sbjct: 424 ANASWDMYANFEVRGDLF 441
>gi|255692976|ref|ZP_05416651.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
finegoldii DSM 17565]
gi|260621289|gb|EEX44160.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
finegoldii DSM 17565]
Length = 444
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 109/390 (27%), Positives = 191/390 (48%), Gaps = 45/390 (11%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+SE++FA + + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKAQGTPVISEIEFAGRYT--NAKMICITGSNGKTTTTSLIYHIFKSAGMNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEDHHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTE-AKTA 197
M+NY K + + + + + + H A + F VK D A
Sbjct: 190 MQNYIDAKFRITQNQTPDDAFIFWNDDPIIKRELAKHGLK-AHLYPFAAVKEDGAIAYVE 248
Query: 198 SFEVPAVGVVS-QLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTIEILRTP 255
EV ++ ++ + + G+HN +N+ A +S L G+ E + + +
Sbjct: 249 DHEVKINEPIAFNMEQEELALTGQHNLYNSLAAGISANLA---GITKENIRKALSDFKGV 305
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K N +
Sbjct: 306 EHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK------GNDYT 357
Query: 316 KLIEPLNHHRCVITFGYSGVLIWKTLVNNGL-------SIPCFAV-ANMKDAVNHARRMA 367
+ IE L +C L++ L N L +P V MKDAV A ++A
Sbjct: 358 E-IEDLVREKC-------SALVYMGLHNEKLHDFFDRFGLPVADVQTGMKDAVEAAYKLA 409
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
G+ ++LSP CASFD F+++E RG F+E
Sbjct: 410 KKGETVLLSPCCASFDLFKSYEDRGEQFKE 439
>gi|312128117|ref|YP_003992991.1| udp-n-acetylmuramoylalanine/d-glutamate ligase
[Caldicellulosiruptor hydrothermalis 108]
gi|311778136|gb|ADQ07622.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
[Caldicellulosiruptor hydrothermalis 108]
Length = 458
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 114/381 (29%), Positives = 189/381 (49%), Gaps = 29/381 (7%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V+ E++ A + +S I+A+TGTNGK+T T VG++L + V GN+G P
Sbjct: 91 KKGVEVIGEIELAYRFC-KSKNIVAITGTNGKTTTTTLVGEILKKQYEDVVVCGNIGLPF 149
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
I + + + V+E+SS+Q+E KYF P V +LN+TPDHL RH TM+NY
Sbjct: 150 -------IDTVETSSENTIFVLEISSFQLETI-KYFKPKVGCILNITPDHLNRHMTMENY 201
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPG-----VKIDTEAKTA 197
K +F ++ +L + N + I + N+ V ++ +
Sbjct: 202 IKAKMRIFENIDEMGYTVLNYDNNVTRDLIGLAKGNVIVFSKTKTQFENVVFVENDVIYF 261
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+FE V+ + ++ + G+HN NA +AA+S L G++ + + ++ R H
Sbjct: 262 TFEGKTQEVMKKDEIF---IPGQHNLENA-LAAISCT-LPFGIEKDTIEQVLKTFRGVEH 316
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R++ V +I G+ + +DSK TN +A + K + +++ GG K FEK
Sbjct: 317 RIEFVA-EINGIKFYNDSKGTNTDAAEKAISAFK-NPIILIAGGYDK------GESFEKF 368
Query: 318 IEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLS 376
+ + + V G + I L G V+ +K+AV + A NGD ++LS
Sbjct: 369 VSLIAKRVKKVFLLGQTKHKIASELEKIGYK-NFELVSTLKEAVRKSFESAQNGDVVLLS 427
Query: 377 PGCASFDEFRNFEHRGMVFQE 397
P CAS+D F N+E RG +F+E
Sbjct: 428 PACASWDMFENYEQRGRMFKE 448
>gi|332305223|ref|YP_004433074.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Glaciecola sp.
4H-3-7+YE-5]
gi|332172552|gb|AEE21806.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Glaciecola sp.
4H-3-7+YE-5]
Length = 441
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 114/398 (28%), Positives = 181/398 (45%), Gaps = 53/398 (13%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
L+ + +++G +V+ +++ A + +LAVTG+NGKSTV T +M G
Sbjct: 73 LSLQTAAIQEAIEAGVQVVGDIELFAMF--NNTPVLAVTGSNGKSTVATLAYEMCIAGGK 130
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTP 130
+A +GGN+G P AL + + V+E+SS+Q+E P V+ +LNL+
Sbjct: 131 KALLGGNIGTP---------ALELLEKDADIIVLELSSFQLE-STHTLRPLVACMLNLSD 180
Query: 131 DHLERHKTMKNYALTKCHL-----FSHMVNTKLGLLPFG-NQHLNEAIKGHRFNLAWIGA 184
DHL+RH M +Y K + FS P N + + L+W
Sbjct: 181 DHLDRHGDMLSYQRAKLRIYKDARFSVCNRDDAATWPMTINPDVMFGLSSSERGLSWDKD 240
Query: 185 FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
+ +D +A L ++G HN N + A + + + G+++EA
Sbjct: 241 TAQLLLDGKA--------------YLDSQACMLVGEHNMLN--IQAATAMTMLAGIELEA 284
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLG 300
+ S HR Q V V W++DSKATN+ AT + L KG K +++ G
Sbjct: 285 IKSAAMNFAGLAHRCQTVAMS-SNVRWINDSKATNVGATIAAIDGLAPTCKG-KLILIAG 342
Query: 301 GQAKVLNGQESNGFEKLIEPLNHHRC-VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDA 359
G K + F L E NH +IT G G + K L V N++DA
Sbjct: 343 GDGKGAD------FSPLEERFNHQVSELITLGKDGPELAK------LKPSSHQVVNLEDA 390
Query: 360 VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
V A +A+ ++LSP CAS D F+N++ RG +F++
Sbjct: 391 VQLAASLASKDSTVLLSPACASLDMFKNYQQRGELFEQ 428
>gi|306825643|ref|ZP_07458982.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sp. oral taxon 071 str. 73H25AP]
gi|304432004|gb|EFM34981.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sp. oral taxon 071 str. 73H25AP]
Length = 450
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 183/377 (48%), Gaps = 31/377 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEA 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ ++M +L F NQ L + + + + K+D E
Sbjct: 203 YVAAKWNIQNNMAAADFLVLNF-NQDLAKEL-ATKTQATVVPFSTKEKVDGAYLENGQLY 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F V S++ V G HN N A+A ++V L GVD + + T+ HR
Sbjct: 261 FRGEVVMAASEI-----GVPGSHNVEN-ALATIAVAKLR-GVDNQIIKETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q V +I+GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQFVD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
+ + ++ G S + + G++ ++ DA A +AT GD ++LSP
Sbjct: 367 PDITGLKKMVILGQSAERVKRAAEKAGVT--YVDATDIADATRKAYELATQGDVVLLSPA 424
Query: 379 CASFDEFRNFEHRGMVF 395
AS+D + NFE RG +F
Sbjct: 425 NASWDMYANFEVRGDLF 441
>gi|257483449|ref|ZP_05637490.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. tabaci str. ATCC 11528]
gi|422682234|ref|ZP_16740501.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. tabaci str. ATCC 11528]
gi|331011575|gb|EGH91631.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. tabaci str. ATCC 11528]
Length = 448
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 114/370 (30%), Positives = 178/370 (48%), Gaps = 55/370 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + + +
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKYLAFQFENL-----MPV 265
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
+KV G HN A A LG +G+ +A+ +++ HR Q + R+ GV +
Sbjct: 266 RELKVRGAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL-REHDGVHYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCV 327
+DSKATN+ A + D+ G K V++ GG K + F L P+ H R
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGAD------FSALRAPVAEHCRAA 375
Query: 328 ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ G LI + L G ++ V ++ AV + R+A GDA++LSP CAS D F+N
Sbjct: 376 VLLGRDAELIAQAL---GDAVTLVRVDTVQAAVEQSARLAQRGDAVLLSPACASLDMFKN 432
Query: 388 FEHRGMVFQE 397
+E RG VF +
Sbjct: 433 YEERGRVFAQ 442
>gi|289624980|ref|ZP_06457934.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. aesculi str. NCPPB 3681]
gi|289647038|ref|ZP_06478381.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. aesculi str. 2250]
gi|422583888|ref|ZP_16659006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. aesculi str. 0893_23]
gi|330868713|gb|EGH03422.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. aesculi str. 0893_23]
Length = 448
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 114/370 (30%), Positives = 178/370 (48%), Gaps = 55/370 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + + +
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKYLAFQFENL-----MPV 265
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
+KV G HN A A LG +G+ +A+ +++ HR Q + R+ GV +
Sbjct: 266 RELKVRGAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL-REHDGVHYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCV 327
+DSKATN+ A + D+ G K V++ GG K + F L P+ H R
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGAD------FSALRAPVAEHCRAA 375
Query: 328 ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ G LI + L G ++ V ++ AV + R+A GDA++LSP CAS D F+N
Sbjct: 376 VLLGRDAELIAQAL---GDTVTLVRVDTVQAAVEQSARLAQRGDAVLLSPACASLDMFKN 432
Query: 388 FEHRGMVFQE 397
+E RG VF +
Sbjct: 433 YEERGRVFAQ 442
>gi|118444015|ref|YP_877138.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
novyi NT]
gi|158512394|sp|A0PXN6.1|MURD_CLONN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|118134471|gb|ABK61515.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium novyi
NT]
Length = 458
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 44/388 (11%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+SG + SE++ + P KI +TG++GK+T T V +L G + +VGGN+GNPL
Sbjct: 99 ESGAYITSEMEEFIKYCPA--KIFGITGSDGKTTTTTLVYNILMTEGYKTWVGGNIGNPL 156
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
F I + K V+E+SS+Q M + + C ++V NL+P+HL+ HK M
Sbjct: 157 ----FSNIEEMKEEDK---VVLELSSFQLMTMKEEINC---ALVTNLSPNHLDIHKDMDE 206
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++F + L +L N N +K + + +I++ A ++
Sbjct: 207 YVDAKKNIFKYQEVNDLLVLNRDNDITNSLVKEAKSRVMQFSR--KEEIESGAYLNGDKL 264
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+G L ++K+ G HN N +AA ++ D +E++ HR +
Sbjct: 265 VLLGK-EVCALEDIKLKGMHNVENL-LAAFCLVSED--ASIESMAKVATTFTGVEHRCEF 320
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI--E 319
V R+I GV + +DS A++ T GL K VIL+ G G++K I E
Sbjct: 321 V-REIDGVKYYNDSIASSPTRTIAGLRAF--EKPVILIAG-----------GYDKHIPFE 366
Query: 320 PLNHH-----RCVITFGYSGVLIW----KTLVNNGLSIPCFAVANMKDAVNHARRMATNG 370
PL + ++ G + I K + + G++IP + +A+ A+ +A G
Sbjct: 367 PLAEEGLDKIQALVLTGLTKNKIKDAFDKAMKDRGINIPIYMEDGFNEAIYRAKDIANEG 426
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVFQEL 398
D I LSP CASFD F NFE RG F+E+
Sbjct: 427 DIITLSPACASFDMFPNFEVRGNKFKEI 454
>gi|339319729|ref|YP_004679424.1| phospho-N-acetylmuramoyl-pentapeptide- transferase [Candidatus
Midichloria mitochondrii IricVA]
gi|338225854|gb|AEI88738.1| phospho-N-acetylmuramoyl-pentapeptide- transferase [Candidatus
Midichloria mitochondrii IricVA]
Length = 461
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 102/388 (26%), Positives = 179/388 (46%), Gaps = 59/388 (15%)
Query: 31 ELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCI 90
+++F Q +++ + +TGTNGKST + +L + I+ +GGN+G P+ E
Sbjct: 106 DIEFLYQKTNKNVGFIGITGTNGKSTTTALINHVLRSVKIKTEIGGNIGTPVLE------ 159
Query: 91 ALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF 150
L F V+EVSS+Q+++ K ++V L +TPDHL++H T K Y K +F
Sbjct: 160 -LEELNSGFY--VLEVSSFQLDLLEKTRF-NIAVCLTITPDHLDKHGTFKRYVEAKQQMF 215
Query: 151 SHMVNTKLGLLP----FGNQHLNEAIKGHRFNL----------AWIGAFPGVKIDTEAKT 196
++ L ++ NQ ++E I R + + GV D
Sbjct: 216 NNQEKGDLAIISTDSYINNQIMSEVIARKRAKVIPISRTEQIEGGVSVISGVLYDNYKSK 275
Query: 197 ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
+ VP + ++G HN N A A + +G +GV E + + + ++ P
Sbjct: 276 KRYNVPDIN----------SLIGEHNGENMAAAFTACIG--VGVKPEEVIAAFKTYKSLP 323
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK 316
HRM + HR G+ +++DSKATN ++T L + + GG K +G K
Sbjct: 324 HRMDLFHR-FNGINFINDSKATNADSTYWALKNF--DNVYWIAGGICK------DSGI-K 373
Query: 317 LIEP----LNHHRCV--ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 370
L++P +NH + G++ +L ++P + +A++ +
Sbjct: 374 LLKPFFEKINHAYLIGDAAEGFAAILAES-------NVPYTIATTLVNAISIIKAQNIEN 426
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVFQEL 398
++LSP CAS D+++N+E RG F +L
Sbjct: 427 GNVLLSPACASLDQWKNYEERGNAFMKL 454
>gi|406577612|ref|ZP_11053213.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
sp. GMD6S]
gi|404459712|gb|EKA06037.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
sp. GMD6S]
Length = 450
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 182/377 (48%), Gaps = 31/377 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SDAPIIGITGSNGKTTTTTMIGEVLTAAGQRGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ + M +L F NQ L + + + + K+D E
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDL-ATKTEATVVPFSTKEKVDGAYLENGLLY 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F V S++ V G HN N A+A ++V L GVD + + T+ HR
Sbjct: 261 FRGEVVMAASEI-----GVPGSHNVEN-ALATIAVAKLR-GVDNQIIKETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q V +I+GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQFVD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
+ + ++ G S + + G++ ++ DA A +AT GD ++LSP
Sbjct: 367 PDITGLKKMVILGQSAERVKRAAEKAGVT--YVDATDIADATRKAYELATQGDVVLLSPA 424
Query: 379 CASFDEFRNFEHRGMVF 395
AS+D + NFE RG +F
Sbjct: 425 NASWDMYANFEVRGDLF 441
>gi|167630126|ref|YP_001680625.1| udp-n-acetylmuramoylalanine--d-glutamate ligase [Heliobacterium
modesticaldum Ice1]
gi|167592866|gb|ABZ84614.1| udp-n-acetylmuramoylalanine--d-glutamate ligase, putative
[Heliobacterium modesticaldum Ice1]
Length = 465
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 116/363 (31%), Positives = 178/363 (49%), Gaps = 37/363 (10%)
Query: 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
+A+TGTNGK+T + VG +L G FVGGN+G PL E A A + V E
Sbjct: 113 IAITGTNGKTTTTSLVGAILKAAGRNPFVGGNIGQPLVEEAQRLTA-------DRWVVAE 165
Query: 106 VSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGN 165
VSS+Q+E ++ F P S++LN+TPDHL+RH M+NY K +F + + + +L + +
Sbjct: 166 VSSFQLETTDQ-FHPRASLILNITPDHLDRHGDMENYRAIKARIFRNQGSEDITVLNYDD 224
Query: 166 QHLNEAIKGHRFNLAWIGAFP----GVKIDTEAKTASFEVP----AVGVVSQLQLHNMKV 217
+ R + + G +D F P AV V +LQ+
Sbjct: 225 PLVRTLAADCRSRVLFFSRLQKMEHGAYVD--GGMIRFAGPEGDMAVAAVDRLQIK---- 278
Query: 218 MGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
G HN NA A +GL I V A + I+ + HRM+ V ++GV +V+DSK
Sbjct: 279 -GAHNVENALAACALTVGLGIAPAVVA-QAMID-FQPVEHRMEPVG-TVEGVAYVNDSKG 334
Query: 278 TNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVL 336
TN +A+ + +++ GG+ K + F +L E + + V+ G + +
Sbjct: 335 TNPDASIKAIESYD-RPVILIAGGKNK------GSDFSELAEIIKKRVKAVVLVGQAAPV 387
Query: 337 IWKTLVNNGLSIPCFAVANMKDA-VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
+ L G + + + DA V A +MA GD ++LSP CAS D F N+E RG VF
Sbjct: 388 LEAALRKAG--VEAIKLVDTFDATVLEAAQMAEPGDVVLLSPACASLDMFPNYEVRGQVF 445
Query: 396 QEL 398
++L
Sbjct: 446 KDL 448
>gi|262166446|ref|ZP_06034183.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
VM223]
gi|262026162|gb|EEY44830.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
VM223]
Length = 440
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 118/427 (27%), Positives = 192/427 (44%), Gaps = 80/427 (18%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + + ++A+TG+NG
Sbjct: 61 WNLEWLLSADLVVTNPGIALATPEIQQVLATGIPVVGDIELFAWHVDK--PVIAITGSNG 118
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++ VGGN+G P AL P+ ++ V+E+SS+Q+E
Sbjct: 119 KSTVTDLSGVLANAAGVKTAVGGNIGVP---------ALDLISPEVELYVLELSSFQLET 169
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIK 173
+ + LNL+ DH++R++ M++Y K +F H +
Sbjct: 170 TSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVV--------------- 213
Query: 174 GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ--------------LQLHNMKVMG 219
N + FP + T E+PA V++ L + ++G
Sbjct: 214 ----NADDMQTFPDHAAHLQVVTFGVELPAQFSVAEHQGREYLFARDNAVLASSELSLVG 269
Query: 220 RHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
RHN N +A L G+++ + ++AL S + HR Q+V D G+ WV+DSKA
Sbjct: 270 RHNVANVLTVLALLDSAGVNVRLALDALKSYTGLT----HRCQVV-ADNHGIKWVNDSKA 324
Query: 278 TNLEATCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVL 336
TN+ +T L LK + +L+GG K G + + L C FG
Sbjct: 325 TNVASTLAALSGLKIEGQLYLLVGGVGK---GADFTPLAPIFATLPLQLCC--FG----- 374
Query: 337 IWKTLVNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 392
V+ +P A D+ + R +GD ++LSP CASFD+F+NF RG
Sbjct: 375 -----VDGDKFMPLHPSARFYDSMESIIRSIRPELKSGDMVLLSPACASFDQFKNFMARG 429
Query: 393 MVFQELA 399
+F +LA
Sbjct: 430 DIFAQLA 436
>gi|384228224|ref|YP_005619959.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
aphidicola str. Ua (Uroleucon ambrosiae)]
gi|345539157|gb|AEO08024.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
str. Ua (Uroleucon ambrosiae)]
Length = 439
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 107/388 (27%), Positives = 185/388 (47%), Gaps = 57/388 (14%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++S+++ A+ + ++ ++A+TGTNGKSTV T + ++ + G +GGN+G P+
Sbjct: 90 GIEIISDIELFAREV--TVPVIAITGTNGKSTVATMITKIAKYSGFHVLLGGNIGLPV-- 145
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERH-KTMKNY 142
L K + ++E+SS+Q+E N + ++V+LN+ DH+ R+ + + Y
Sbjct: 146 -------LDILHKKTDLYIIELSSFQLE--NTFNLKAKIAVILNIYKDHINRYPEGFEQY 196
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
TK +F H +T + N L + ++ N G K++ + +
Sbjct: 197 KNTKLSIF-HQADT---CIINSNDQLENILYKNKKNFISFGK----------KSSDYYIC 242
Query: 203 AVGVVSQLQLHNMKVM--------GRHNYHNA--AVAALSVLGLDIGVDVEALNSTIEIL 252
+ L N K++ G HNY+N ++A + + AL + +
Sbjct: 243 STSNAYILCYKNQKILNSSELLLSGYHNYNNVLVSIAIADAMKFSRKNTIYALKKFVSL- 301
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKVLNGQES 311
PHR Q + + G+ W++DSK+TN+ +T L LK + +LLGG +K S
Sbjct: 302 ---PHRFQTIKNE-NGINWINDSKSTNVNSTEAALNALKIKGTIHLLLGGDSK------S 351
Query: 312 NGFEKLIEPLNHHRCVI-TFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 370
N F+ L + I FG G+ I K + V N+K A+ + +G
Sbjct: 352 NTFDILKTYFKKTKIKIYCFGKDGIKISKVCKKKSV-----YVDNLKQAMILIVKNVQSG 406
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVFQEL 398
D ++LSPGC+S D+F NFE RG F +L
Sbjct: 407 DTVLLSPGCSSLDQFSNFEERGNFFIKL 434
>gi|124022231|ref|YP_001016538.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Prochlorococcus marinus str. MIT 9303]
gi|123962517|gb|ABM77273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
marinus str. MIT 9303]
Length = 460
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 114/390 (29%), Positives = 187/390 (47%), Gaps = 31/390 (7%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L Q G + E+ A + + + +A+TGTNGK+TV + +L G++A +GGN
Sbjct: 86 LTALRQRGIDIDGEMAVAWRSLSH-LPWIAITGTNGKTTVTHLLNHVLESNGLKAPMGGN 144
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G+ +E A + +P + V+E+SSYQ+E + P + + NLTPDHLERH
Sbjct: 145 VGHAAAEIALKWRQPNAQRPDW--LVMELSSYQIEAAPE-IAPRIGIWTNLTPDHLERHG 201
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF-PGVKIDTEAKT 196
T+ Y K L +++ + + L+ L W+ + PG T
Sbjct: 202 TLDAYRKIKRGLLER---SEIRIFNGDDPDLSSQRSSWDKGL-WVSSEGPG----TANHR 253
Query: 197 ASFEVPAVGVVSQLQ-----LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
A F + A G+V Q + + G+HN N + ++ G+ +A+ +++
Sbjct: 254 ADFWIDAEGLVRDPQGALFAASALAMPGQHNLQN--LLMVTAAARQTGLPAKAIEASLRS 311
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQES 311
PHR++ + IQ ++ +DSKATN +A C GL + V+L GGQ K G S
Sbjct: 312 FPGVPHRLEELGH-IQQMSVYNDSKATNYDAACVGLKAVPA-PAVVLAGGQTK--QGDAS 367
Query: 312 NGFEKLIEPLNHHRC-VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 370
++ L+ C VI FG + + +G +N+ AV A +
Sbjct: 368 GWLKQ----LDLKACAVILFGAGAAELNDLIETSGFRGELHCCSNLNAAVTLAIPLGLER 423
Query: 371 DA--IVLSPGCASFDEFRNFEHRGMVFQEL 398
A ++LSP CASFD++++FE RG F+ L
Sbjct: 424 QAACLLLSPACASFDQYQDFEARGEHFRSL 453
>gi|154494018|ref|ZP_02033338.1| hypothetical protein PARMER_03363 [Parabacteroides merdae ATCC
43184]
gi|154086278|gb|EDN85323.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Parabacteroides
merdae ATCC 43184]
Length = 453
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 114/397 (28%), Positives = 195/397 (49%), Gaps = 47/397 (11%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G ++SE++FA + K++ +TG+NGK+T +L G++A
Sbjct: 84 KAPIIKKLKEKGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTMLTYHILRQAGVDAG 141
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+GN L AL ++ V V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 142 LAGNVGNSL--------ALQVAEDPHAVYVIELSSFQLD--NMYDFKADIAILLNITPDH 191
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP----- 186
L+R+ M+NY K + + + + + I R A + F
Sbjct: 192 LDRYNYEMQNYVDAKFRIIRNQTAEDAFIFWNDDPIIAREI-AKRHPQATLYPFAETHEA 250
Query: 187 GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
GVK TE K E + L + + G HN +N+ + ++ +DI E L
Sbjct: 251 GVKGYTEDKKIIIETSNGTFTMEEDL--LALSGTHNLYNSLASGIASKLVDIHD--ENLR 306
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVL 306
+++ HR++ V R ++GV +++DSKATN+ + L + V++LGG K
Sbjct: 307 ASLSDFTGVEHRLEKVAR-VRGVDYINDSKATNVNSCWYALQSMTT-PLVLILGGTDK-- 362
Query: 307 NGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGL------SIPCFAVA-NMKDA 359
G + + E+L++ H LI+ + N L +P A +M++A
Sbjct: 363 -GNDYSEIEELVKKKVH-----------ALIFLGVDNAKLHGFFDGKVPVIEDARSMEEA 410
Query: 360 VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
V A ++A GD ++LSP CASFD F+++E RG F+
Sbjct: 411 VAKAYKLAEKGDTVLLSPCCASFDLFKSYEDRGDQFK 447
>gi|410658123|ref|YP_006910494.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dehalobacter sp.
DCA]
gi|410661113|ref|YP_006913484.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dehalobacter sp.
CF]
gi|409020478|gb|AFV02509.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dehalobacter sp.
DCA]
gi|409023469|gb|AFV05499.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dehalobacter sp.
CF]
Length = 455
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 104/364 (28%), Positives = 172/364 (47%), Gaps = 36/364 (9%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I +TG+NGK+T T VG++ G E V GN+G L H + + V
Sbjct: 109 IAGITGSNGKTTTTTLVGELAKETGREMVVAGNIGLALCGQVEHL-------DQNGIIVA 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E+ N+ +++ LNLTPDHL+RH +++ YA K + + L +L +
Sbjct: 162 ELSSFQLELINRTRV-NIAIFLNLTPDHLDRHGSLEKYAAAKARILENQTEQDLAILNWD 220
Query: 165 NQHLNEAIKGHRFNLAWIGA---FP-GVKIDTE----AKTASFEVPAVGVVSQLQLHNMK 216
+ + E + + + P G+ ++ E K S +G +
Sbjct: 221 DPIVKELAAKAKARVVFFSLKENLPDGICLNGEDIVLKKDHSVAATIIG------RRELL 274
Query: 217 VMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDD 274
+ G HN N AAVAA L+ G+D+ + + + HR +IV R V +++D
Sbjct: 275 LRGGHNLENVMAAVAA----ALEFGLDISKIADVLRHFQPVKHRQEIVGR-FDNVLYIND 329
Query: 275 SKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSG 334
SK TN +++ L + V++ GG+ K L+ E L E + +I G +
Sbjct: 330 SKGTNPDSSIKALQSYE-EPIVLIAGGKNKGLDMTEF-----LQEARIRVKSLILVGMAA 383
Query: 335 VLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMV 394
+ + V G + KDAVN A A GD ++LSP C S+D F+++E RG +
Sbjct: 384 PELEEIAVRLGFP-NIIRTLDFKDAVNIAITEAVPGDVVLLSPACTSWDMFKSYEERGEL 442
Query: 395 FQEL 398
F++L
Sbjct: 443 FKDL 446
>gi|363892027|ref|ZP_09319200.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Eubacteriaceae
bacterium CM2]
gi|361964663|gb|EHL17685.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Eubacteriaceae
bacterium CM2]
Length = 449
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 101/348 (29%), Positives = 177/348 (50%), Gaps = 31/348 (8%)
Query: 59 TFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKY 117
+ +G + +V GN+GN A I+L K F + E+SSYQ+E I N
Sbjct: 120 SMLGDIYKKYDENTYVVGNIGN----AVLSSISLAKPKANF---ITELSSYQLETIVN-- 170
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLN---EAIKG 174
F ++V+LN+TPDHL RHKTM+NY K ++ + + +L ++ ++ E IK
Sbjct: 171 FRVHIAVILNITPDHLSRHKTMENYKNAKYNIAKNQIEGDFLVLNKDDESIDINLENIKS 230
Query: 175 HRFNLAWIGAFP-GVKIDTEAKTASFEVPAVGVVSQ--LQLHNMKVMGRHNYHNAAVAAL 231
+ GV DTE + + + + +++ ++ ++G+HN N +A +
Sbjct: 231 KVIYFSMKEKLKNGVYYDTEKGSI---ISTINGKEEEIIKVKDIHLLGKHNIQNT-LACV 286
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+V LD + + I+ + HR+Q V R++ V +V+DSK TN+++T + +
Sbjct: 287 TVSILD-NIPTALIAEAIKDFKAVKHRLQKV-REVDDVIYVNDSKGTNIDSTLKAIESI- 343
Query: 292 GHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPC 350
+ +++ GG K+L F+ LI+ N + ++ FG + LI T +
Sbjct: 344 DNDIILIAGGYDKMLE------FDDLIKGFNGKVKTLLLFGATKKLIRDTALKYDYK-DI 396
Query: 351 FAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
++ N+K V A+ +A GD ++LSP CAS+D +++FE RG F EL
Sbjct: 397 ISLKNLKQCVQVAKIIAQKGDVVLLSPACASWDMYQSFEERGDEFIEL 444
>gi|218289897|ref|ZP_03494087.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
acidocaldarius LAA1]
gi|218240037|gb|EED07223.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
acidocaldarius LAA1]
Length = 458
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 114/386 (29%), Positives = 189/386 (48%), Gaps = 32/386 (8%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+A L+++ ++++++ A + R I A+TG+NGK+T T VG+ML G V GN
Sbjct: 94 IAELIKASHVIVTDVEIAYWLEER--PIYAITGSNGKTTTTTLVGEMLKASGYHPIVAGN 151
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P+ + + P + V+EVSS+Q+E F P + +LN P HL+ H
Sbjct: 152 IGTPVCD----VVDQPG-----DLLVLEVSSFQLE-GTHTFHPRGAALLNFYPAHLDYHG 201
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNE-----AIKGHRFNLAWIGAFPGVKIDT 192
T + Y K LF++ + +L + + + A + F+L GV +
Sbjct: 202 TYEAYQQAKWKLFANQTPDDVAILNWDQALVRDRAGELAARVRGFSLEGAPFDEGVGVID 261
Query: 193 EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
A A V L + + + GRHN NAA AA L VEA+ +
Sbjct: 262 GALVA---VRGGERTPILPVDQVALPGRHNLQNAAAAAALALAAG--AHVEAVARVLATF 316
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
+ HR++ V R++ GV + +DSKATN +A L + V + GG + ++
Sbjct: 317 QGVEHRLEFV-REVAGVRYYNDSKATNPDAARQALKSFE-RDVVWIAGGLDRGIS----- 369
Query: 313 GFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD 371
F+ L+ ++ R + G + + + L G+S FA + M++AV A R+A GD
Sbjct: 370 -FDPLLPDISGRVRAAVLLGETKEKLREVLARAGVSTCVFA-STMEEAVREASRIAEPGD 427
Query: 372 AIVLSPGCASFDEFRNFEHRGMVFQE 397
++LSP CAS+D F ++E RG +F+E
Sbjct: 428 VVLLSPACASWDMFPSYEVRGSMFKE 453
>gi|169334623|ref|ZP_02861816.1| hypothetical protein ANASTE_01026 [Anaerofustis stercorihominis DSM
17244]
gi|169259340|gb|EDS73306.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerofustis
stercorihominis DSM 17244]
Length = 458
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 109/364 (29%), Positives = 183/364 (50%), Gaps = 42/364 (11%)
Query: 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
+A+TGTNGK+T T VG++ + G + +V GN+GN A V +E
Sbjct: 116 IAITGTNGKTTTTTLVGEIFKNAGYDTYVNGNIGNSFINDA-------EKGDDNSVYALE 168
Query: 106 VSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH-------MVNTKL 158
VSSYQ+E+ +K F P ++++ N+TPDHLERH T + Y K ++F + +VN +
Sbjct: 169 VSSYQLELNDK-FKPDIAIMTNITPDHLERHSTFEEYVRVKGNVFVNQDENDYLIVNKED 227
Query: 159 GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEA----KTASFEVPAVGVVSQL-QLH 213
+L L+E K VK D A K + + G V L ++
Sbjct: 228 KIL----TGLSENAKSKVLTFT-------VKEDKNANAYLKDENIIIDFKGEVYPLIDIN 276
Query: 214 NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
+K+ G HN N A+L+ + GV+ E L +T++ ++ HR++ V + G+ +++
Sbjct: 277 ELKLYGLHNVMNVMAASLAAVVK--GVEKETLINTLKNFKSVEHRIEYVDT-VDGIEYIN 333
Query: 274 DSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGY 332
DSK TN++AT T + +K K V++LGG K+ F++L++ +N + +C++ +G
Sbjct: 334 DSKGTNVDATVTAMKAMK-KKTVLMLGGYDKM------TPFDELVKSINDNIKCIVLYGA 386
Query: 333 SGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 392
I TL + A +A G+ ++LSP +SFD F ++E RG
Sbjct: 387 VQNKIKDTLDKYDYKNYHMVQGGFDEVCIKATSLADKGECVLLSPATSSFDMFDDYEQRG 446
Query: 393 MVFQ 396
F+
Sbjct: 447 RAFK 450
>gi|335029375|ref|ZP_08522882.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
infantis SK1076]
gi|334268672|gb|EGL87104.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
infantis SK1076]
Length = 450
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 182/377 (48%), Gaps = 31/377 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LKKGIPVLTEVELAYLI--SEAPIVGITGSNGKTTTTTMIGEVLTAAGQNGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVA-------QTATDKDTLVMELSSFQL-MGIQEFHPEIAVITNLMPTHIDYHGSFEA 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ S+M +L F NQ L + + + N + K+D E
Sbjct: 203 YVEAKWNIQSNMTAADYLVLNF-NQELAKEL-ATKTNATVVPFSTLEKVDGVYLEGGYLY 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F V + + V G HN N A+A ++V L GVD E + T+ HR
Sbjct: 261 FRGEKV-----MAADEIGVPGSHNVEN-ALATIAVAKLR-GVDNETIKETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q V +I+GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQFVD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
+ + ++ G S + + G++ ++ DA A +A GD ++LSP
Sbjct: 367 PDITGLKKMVILGQSAERVKRAADKAGVA--YVDATDIADATRKAFELAEEGDVVLLSPA 424
Query: 379 CASFDEFRNFEHRGMVF 395
AS+D + NFE RG +F
Sbjct: 425 NASWDMYANFEVRGDLF 441
>gi|384045125|ref|YP_005493142.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
megaterium WSH-002]
gi|345442816|gb|AEN87833.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
megaterium WSH-002]
Length = 449
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 111/374 (29%), Positives = 179/374 (47%), Gaps = 32/374 (8%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
+++E++ A ++ + +TG+NGK+T T + +ML + + GN+G E A
Sbjct: 98 ILTEVELAYEI--SEAPFIGITGSNGKTTTTTLIYKMLEEDQKQPLIAGNIGTVACEVA- 154
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
K V V E+SS+Q+ K F P +S++LNL HL+ H T + Y K
Sbjct: 155 ------QKATKDNVIVTELSSFQLMGIEK-FRPKISLLLNLFDAHLDYHGTKEEYIKAKA 207
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEA---IKGHRFNLAWIG-AFPGVKIDTEAKTASFEVPA 203
+LF++ + ++ ++ + +A +K + + G I E T F+
Sbjct: 208 NLFNNQTSEDFAVINADDELVMKASANVKATKVPFSVTAQTTEGAYIKNE--TIFFKDEE 265
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
V + L ++ + GRHN N +AA+SV+ L G EA+ + HR+Q V
Sbjct: 266 V-----MSLKDVVLPGRHNQENI-LAAVSVVKL-YGCSNEAIYRVLTTFAGVKHRVQYVT 318
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
I + +DSKATN+ AT L ++L GG + N F+ L E +
Sbjct: 319 T-INKRKFYNDSKATNMLATKVALSAF-SQPTILLAGGLDR------GNEFDDLKEEFKN 370
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 383
+ VITFG + I + G+ I V N+K AV+ A + D I+LSP CAS+D
Sbjct: 371 VKAVITFGETAPKIERVAKEAGIQI-VKRVDNVKQAVSEAYACSDEEDVILLSPACASWD 429
Query: 384 EFRNFEHRGMVFQE 397
+F+ FE RG +F E
Sbjct: 430 QFKTFEERGDIFIE 443
>gi|417935287|ref|ZP_12578607.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
mitis bv. 2 str. F0392]
gi|340771857|gb|EGR94372.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
mitis bv. 2 str. F0392]
Length = 450
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 105/378 (27%), Positives = 183/378 (48%), Gaps = 33/378 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LEKGIPVLTEVELAYLI--SDAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVA-------QTATDKDTLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTA 197
Y K ++ + M +L F NQ L + + A + F + K+D E
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKELATK--TQATVVPFSTLEKVDGAYLEDGQL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F V S++ V G HN N A+A ++V L G+D + + + H
Sbjct: 260 YFRGEVVMAASEI-----GVPGSHNIEN-ALATIAVAKLR-GIDNQTIKEVLSAFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R+Q V +I+GV + +DSK+TN+ AT L K +++ GG + N F++L
Sbjct: 313 RLQFVD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDEL 365
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
+ + + ++ G S + + G++ ++ DA A +AT GD ++LSP
Sbjct: 366 VPDITGLKKMVILGQSAERVKRAAEKAGVA--YVDATDIADATRKAYELATEGDVVLLSP 423
Query: 378 GCASFDEFRNFEHRGMVF 395
AS+D + NFE RG +F
Sbjct: 424 ANASWDMYANFEVRGDLF 441
>gi|289168282|ref|YP_003446551.1| MurD D-glutamic acid adding enzyme [Streptococcus mitis B6]
gi|288907849|emb|CBJ22689.1| MurD D-glutamic acid adding enzyme [Streptococcus mitis B6]
Length = 450
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 105/374 (28%), Positives = 182/374 (48%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIVGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVA-------QTATDKDTLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + R A + F + A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKELA--RKTQATVVPFSTQEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A + V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIVVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V +I+GV + +DSK+TN+ AT L K +++ GG + N F++L+ +
Sbjct: 317 VD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVDATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|190570951|ref|YP_001975309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
gi|190357223|emb|CAQ54641.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
Length = 451
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 110/377 (29%), Positives = 183/377 (48%), Gaps = 46/377 (12%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
++ S+++ + + K++ +TGTNGKST + +G +L G + +GGNLG P+ +
Sbjct: 101 KIKSDIELFLETKTTNQKVIGITGTNGKSTTTSLIGHILKSTGKKVAIGGNLGMPILDL- 159
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ ++ V+E SS+Q+E+ N+ +SV+LN+TPDH++RH +M NY TK
Sbjct: 160 ---------ERDAEIYVIEFSSFQLELMNE-INVDISVLLNITPDHIDRHGSMNNYIATK 209
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
L + +K+ ++ N+ I FN F G KI A +
Sbjct: 210 LKLIN---GSKIAVIGCDNK-----ITSDVFN-----KFTGNKIPISASMSPSLSSQCLG 256
Query: 207 VSQLQLHNMKVMGRH-----NYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+L+ H++ V N N VAA +V L +GVD + + I+ HR +
Sbjct: 257 TGKLENHSLSVSDVKINLVSNVEN-IVAAHAVCKL-LGVDSSTIVNEIKSFPGLRHRNEF 314
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
+ + I V +++DSKATN E+T ++ K ++GG++K G E L +
Sbjct: 315 LGK-IHNVLFINDSKATNAESTEKAILSYKN--IYWIVGGKSK------KGGIESLSKHF 365
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD---AIVLSPG 378
R G S + + N + C+ N+++A A A N AI+LSP
Sbjct: 366 TKIRKAFLIGESTEVFANIMENKIDYMKCY---NLENAFKLAFEEAINSKEEVAILLSPA 422
Query: 379 CASFDEFRNFEHRGMVF 395
C+SFD+++NFE RG F
Sbjct: 423 CSSFDQWKNFEERGEAF 439
>gi|149002384|ref|ZP_01827326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP14-BS69]
gi|182683613|ref|YP_001835360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae CGSP14]
gi|237650293|ref|ZP_04524545.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae CCRI 1974]
gi|237821989|ref|ZP_04597834.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae CCRI 1974M2]
gi|418075803|ref|ZP_12713043.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47502]
gi|418143510|ref|ZP_12780310.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13494]
gi|419457834|ref|ZP_13997778.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA02254]
gi|421231465|ref|ZP_15688112.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2080076]
gi|226722948|sp|B2IN76.1|MURD_STRPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|147759699|gb|EDK66690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP14-BS69]
gi|182628947|gb|ACB89895.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae CGSP14]
gi|353750378|gb|EHD31018.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47502]
gi|353809251|gb|EHD89511.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13494]
gi|379531707|gb|EHY96941.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA02254]
gi|395596564|gb|EJG56780.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2080076]
Length = 450
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 182/374 (48%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVAQTA----SDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L VD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-DVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|260891632|ref|ZP_05902895.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptotrichia
hofstadii F0254]
gi|260858642|gb|EEX73142.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptotrichia
hofstadii F0254]
Length = 459
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 109/415 (26%), Positives = 198/415 (47%), Gaps = 53/415 (12%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA L + G +++SE+D A + + ++IKI++ TGTNGK+T T + ++LN G A
Sbjct: 63 KAELLKVAKEKGVKIISEIDLAYKYVDKNIKIISFTGTNGKTTTSTKMAELLNFAGFRAK 122
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHL 133
+ GN A F L + + + V+E+SSYQ+E N ++ ++NLTPDHL
Sbjct: 123 LAGN-------AGFSFAKLVADEEELDYIVLELSSYQLE-NNPQIHSNIAGIINLTPDHL 174
Query: 134 ERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQ---------HLNEAIKGHRFNLA---- 180
R++++++Y +TK +F L+ ++ +NE +K + L+
Sbjct: 175 TRYESVEDYYITKFAIFDKQTGDDFALINLDDEVFAELYERREINEKMKAQKVYLSKETK 234
Query: 181 -WIGAFP-GVKIDTEAKTASFEVPAVG----VVSQ--LQLHNMKVMGRHNYHNA--AVAA 230
+ + ++I + E+ G +S+ L+ + + GRHN N +++
Sbjct: 235 GTVFVYENNIRIMKDLSKRIDEIQNFGEKIDEISEILLKTEELSLKGRHNLENMLFLISS 294
Query: 231 LSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVT-WVDDSKATNLEATCTGLMD 289
+L + E L ST HR++ ++G T +++DSK TN+E+T + D
Sbjct: 295 AKILNVKNEKLAEFLKST----NALEHRLENFF--VKGNTAFINDSKGTNVESTLKAI-D 347
Query: 290 LKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIP 349
+ +++LGG K ++ LIE + + F Y + L+++ I
Sbjct: 348 SFNNSIIMILGGDDKKIDNM------PLIERVKEK---VDFVYLIGDNAQILIDDMEKIG 398
Query: 350 CFAVANMKDAVNHARRMATNGD-----AIVLSPGCASFDEFRNFEHRGMVFQELA 399
N++ N + N D ++ SP +SF +F++FEHRG VF+EL
Sbjct: 399 YKNYKNLETVENVLNYLKQNVDFSQNQTVLFSPATSSFCQFKSFEHRGKVFKELT 453
>gi|262170650|ref|ZP_06038328.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
MB-451]
gi|261891726|gb|EEY37712.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
MB-451]
Length = 440
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 119/427 (27%), Positives = 191/427 (44%), Gaps = 80/427 (18%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + + ++A+TG+NG
Sbjct: 61 WNLEWLLSADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHVDK--PVIAITGSNG 118
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++ VGGN+G P AL P+ ++ V+E+SS+Q+E
Sbjct: 119 KSTVTDLSGVLANAAGVKTAVGGNIGVP---------ALDLISPEVELYVLELSSFQLET 169
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIK 173
+ + LNL+ DH++R++ M++Y K +F H +
Sbjct: 170 TSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVV--------------- 213
Query: 174 GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ--------------LQLHNMKVMG 219
N + FP + T E PA V++ L + ++G
Sbjct: 214 ----NADDVQTFPDHAAHLQVVTFGVEQPAQFSVAEHQGREYLFARDNAVLASSELSLVG 269
Query: 220 RHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
RHN N +A L G+++ + ++AL S + HR Q+V D G+ WV+DSKA
Sbjct: 270 RHNVANVLTVLALLDSAGVNVRLALDALKSYTGLT----HRCQVV-ADNHGIKWVNDSKA 324
Query: 278 TNLEATCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVL 336
TN+ +T L LK + +L+GG K G + + L C FG
Sbjct: 325 TNVASTLAALSGLKIEGQLYLLVGGVGK---GADFTPLAPVFATLPLQLC--CFG----- 374
Query: 337 IWKTLVNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 392
V+ +P A D+ V R +GD ++LSP CASFD+F+NF RG
Sbjct: 375 -----VDGDKFMPLHPSARFYDSMESIVRSIRPELKSGDMVLLSPACASFDQFKNFMARG 429
Query: 393 MVFQELA 399
+F +LA
Sbjct: 430 DIFAQLA 436
>gi|449143733|ref|ZP_21774556.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
mimicus CAIM 602]
gi|449080731|gb|EMB51642.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
mimicus CAIM 602]
Length = 440
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 119/427 (27%), Positives = 191/427 (44%), Gaps = 80/427 (18%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + + ++A+TG+NG
Sbjct: 61 WNLEWLLSADLVVTNPGIALATPEIQQVLATGIPVVGDIELFAWHVDK--PVIAITGSNG 118
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++ VGGN+G P AL P+ ++ V+E+SS+Q+E
Sbjct: 119 KSTVTDLSGVLANAAGVKTAVGGNIGVP---------ALDLISPEVELYVLELSSFQLET 169
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIK 173
+ + LNL+ DH++R++ M++Y K +F H +
Sbjct: 170 TSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVV--------------- 213
Query: 174 GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ--------------LQLHNMKVMG 219
N + FP + T E PA V++ L + ++G
Sbjct: 214 ----NADDVQTFPDHAAHLQVVTFGVEQPAQFSVAEHQGREYLFARDNAVLASSELSLVG 269
Query: 220 RHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
RHN N +A L G+++ + ++AL S + HR Q+V D G+ WV+DSKA
Sbjct: 270 RHNVANVLTVLALLDSAGVNVRLALDALKSYTGLT----HRCQVV-ADNHGIKWVNDSKA 324
Query: 278 TNLEATCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVL 336
TN+ +T L LK + +L+GG K G + + L C FG
Sbjct: 325 TNVASTLAALSGLKIEGQLYLLVGGVGK---GADFTPLAPVFATLPLQLC--CFG----- 374
Query: 337 IWKTLVNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 392
V+ +P A D+ V R +GD ++LSP CASFD+F+NF RG
Sbjct: 375 -----VDGDKFMPLHPSARFYDSMESIVRSIRPELKSGDMVLLSPACASFDQFKNFMARG 429
Query: 393 MVFQELA 399
+F +LA
Sbjct: 430 DIFAQLA 436
>gi|340347383|ref|ZP_08670492.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
dentalis DSM 3688]
gi|433651150|ref|YP_007277529.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prevotella
dentalis DSM 3688]
gi|339609475|gb|EGQ14347.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
dentalis DSM 3688]
gi|433301683|gb|AGB27499.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prevotella
dentalis DSM 3688]
Length = 443
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 109/390 (27%), Positives = 194/390 (49%), Gaps = 44/390 (11%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L+ G ++SE++FA + K++ +TG+NGK+T + + + G +A + GN+G
Sbjct: 82 LMAQGTHIISEIEFAGRYT--HAKMICITGSNGKTTTTSLIYHIFKAAGYDAGLAGNIG- 138
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
H +AL ++ + ++E+SS+Q++ N Y F ++++LN+TPDHL+R+
Sbjct: 139 -------HSLALQVAEEPHEYYIIELSSFQLD--NMYNFRSNIAILLNITPDHLDRYDFK 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE----AIKGHRFNLAWIGAFPGVKI 190
+NY K + + + P Q L++ A+K L G+ +
Sbjct: 190 FQNYVDAKMRILQNQTEDDSFIFWNDDPVIKQELDKYDIRAVKCPFSELKEKGSIGYM-- 247
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI-GVDVEALNSTI 249
E E P + Q +L + G+HN +N+ A L+ +I G+ E + ++
Sbjct: 248 --EEGQYKLEFPTPFNMEQEEL---SLTGKHNIYNSLAAGLAS---NISGIKKEIIRKSL 299
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
HR++ V D+ GV +++DSKATN++A L ++ ++++GG+ K G
Sbjct: 300 SDFPGVEHRLEKVC-DVAGVHYINDSKATNVDACWYALESMRT-PTILIIGGKDK---GN 354
Query: 310 ESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVN-NGLSIPCFAVANMKDAVNHARRMAT 368
+ + ++L++ +CV Y G K N + L IP +M++ V MA
Sbjct: 355 DYSEIQELVK----QKCV-GLVYLGADNAKLHANFDHLGIPVRDTHSMQECVAACYDMAR 409
Query: 369 NGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
GD ++LSP CASFD F+N E RG F+ L
Sbjct: 410 PGDTVLLSPCCASFDLFKNMEDRGDQFKTL 439
>gi|225854210|ref|YP_002735722.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae JJA]
gi|418182294|ref|ZP_12818855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA43380]
gi|254766060|sp|C1CD51.1|MURD_STRZJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|225722576|gb|ACO18429.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae JJA]
gi|353850531|gb|EHE30535.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA43380]
Length = 450
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 183/374 (48%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGLFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLVKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L VD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-DVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|333924511|ref|YP_004498091.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|333750072|gb|AEF95179.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 462
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 109/370 (29%), Positives = 173/370 (46%), Gaps = 20/370 (5%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+ EL+ A + I+A+TGTNGK+T + +GQM G V GN+G PL+
Sbjct: 104 VIGELELAYRFA--RAPIVAITGTNGKTTTTSLIGQMFRDAGYHTLVAGNIGLPLASEV- 160
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ + + V EVSS+Q+E + F P V+VVLN+TPDHL+RH +M Y K
Sbjct: 161 ------ENYSRQDIIVAEVSSFQLET-TQSFAPRVAVVLNVTPDHLDRHGSMAEYIRAKS 213
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
+F+H +L + + E + + ++ + V GV
Sbjct: 214 LIFAHQDQEDWAVLNYDDPVTREMAADCPSQVLFFSRQHILEKGIYVQDGKIMVADQGVT 273
Query: 208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQ 267
++ +++ G HN NA A + + G+ L T+E HR++ V I
Sbjct: 274 EITPVNTLRIPGAHNLENALAAVAAGYAM--GIAATDLARTLESFAGVAHRLEYVAT-ID 330
Query: 268 GVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCV 327
GV +++DSK TN +A L D +++ GG+ K G + F + I+ R +
Sbjct: 331 GVKYINDSKGTNPDAAIKAL-DAYNEPIILIAGGKNK---GSDFTQFARKIK--EKVRVL 384
Query: 328 ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
I G G I + G + + AV A + A G+ ++LSP CAS+D F N
Sbjct: 385 IVLGLHGYQIEAAARDQGFT-NILQAQDYPQAVRLAHQQARPGEVVLLSPACASWDMFNN 443
Query: 388 FEHRGMVFQE 397
FE RG +F++
Sbjct: 444 FEERGELFKQ 453
>gi|342215282|ref|ZP_08707932.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
oral taxon 780 str. F0422]
gi|341588668|gb|EGS32053.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
oral taxon 780 str. F0422]
Length = 450
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 124/392 (31%), Positives = 199/392 (50%), Gaps = 43/392 (10%)
Query: 21 LLQSGKR----VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG 76
++Q K+ V+ E++ A +V IL VTGTNGK+T + + ++L + +VGG
Sbjct: 84 IIQEAKKRNIPVVGEVEIAYEV--SKAPILGVTGTNGKTTTTSLLAEVLKEAKWDVYVGG 141
Query: 77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH 136
N+G LSE A P+ V V E+SSYQ+E +K F +++LN+TPDHL RH
Sbjct: 142 NIGYSLSEQALAV-------PETGVLVAELSSYQLESIDK-FRTKGAILLNVTPDHLLRH 193
Query: 137 KTMKNYALTKCHLFSHMVNTKLG---LLPFGN---QHLNEAIKGHRFNLAWIGAF-PGVK 189
KTM+ Y K ++F N +LG +L F + + + +KGH ++ G
Sbjct: 194 KTMERYQEAKENIFR---NQELGDWTVLNFDSPIVADMAKRVKGHVLGISQERPVTDGAY 250
Query: 190 IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD--IGVDVEALNS 247
D A + AV +++ +H + G HN N LSV+ L +GV VE ++
Sbjct: 251 FDNNTCYAVMQGKAVPIITTKDIH---IPGSHNIENI----LSVIALTYALGVAVEDIHQ 303
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLN 307
I HR++ + R + GVT+ +DSKATN ++T L V++ GG+ K+ +
Sbjct: 304 AIAKFHGVAHRLERI-RTLHGVTYYNDSKATNTDSTIKALESFTS-PLVLIAGGKDKMTD 361
Query: 308 GQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIP-CFAVANMKDAVNHARRM 366
+E K + + +I G + + V G +P +M++ V+ + R+
Sbjct: 362 LKEMMELVK-----TNVKELILIGEAAQRFAEAAVKVG--VPHIHRCESMEETVSLSARI 414
Query: 367 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
A +GD ++LSP CASFD + FE RG F+ L
Sbjct: 415 AEDGDVVLLSPACASFDWYARFEDRGDHFRRL 446
>gi|309799972|ref|ZP_07694172.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
infantis SK1302]
gi|308116371|gb|EFO53847.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
infantis SK1302]
Length = 450
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 181/377 (48%), Gaps = 31/377 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LEKGIPVLTEVELAYLI--SDAPIVGITGSNGKTTTTTMIGEVLTAAGQNGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVA-------QTATDKDTLVMELSSFQL-MGIQEFHPEIAVITNLMPTHIDYHGSFEA 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ S+M +L F NQ L + + + N + K+D E
Sbjct: 203 YVAAKWNIQSNMTAADYLVLNF-NQELAKEL-ATKTNATVVPFSTLEKVDGAYLEDGLLY 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F V + + V G HN N A+A ++V L GVD E + T+ HR
Sbjct: 261 FRGEKV-----MAADEIGVPGSHNVEN-ALATIAVAKLR-GVDNEIIKETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q V + I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQFVDQ-INGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
+ + ++ G S + + G++ ++ DA A +A GD ++LSP
Sbjct: 367 PDITGLKKMVILGQSAERVKRAADKAGVA--YVDATDIADATRKAYELAEEGDVVLLSPA 424
Query: 379 CASFDEFRNFEHRGMVF 395
AS+D + NFE RG +F
Sbjct: 425 NASWDMYANFEVRGDLF 441
>gi|262195186|ref|YP_003266395.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haliangium
ochraceum DSM 14365]
gi|262078533|gb|ACY14502.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Haliangium
ochraceum DSM 14365]
Length = 490
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 118/390 (30%), Positives = 178/390 (45%), Gaps = 33/390 (8%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVG---QMLNHLGIE-AFVGGNL 78
+G V++E++ A + + +++A+TGTNGKST G Q + G F GGNL
Sbjct: 94 DAGAEVIAEIELAYRCLHPEAQLIAITGTNGKSTTTALTGALCQAASDAGAPPTFCGGNL 153
Query: 79 GN-PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
GN PL EA H P++ V V EV+ + +E F P V+ LN+T DHL+R+
Sbjct: 154 GNHPLIEAVDH----PANTAGGFV-VAEVAGFMLET-CAGFRPNVAACLNITEDHLDRYG 207
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP----------G 187
TM YA K ++ + N H + G + + F G
Sbjct: 208 TMDVYASMKTRVYRWQRADDFAI---ANAHCARTLAGAQAAAGRVLVFDAEAPLPPGTCG 264
Query: 188 VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNS 247
+ E A G + ++ ++G+HN NA A L+ +GV +A+ +
Sbjct: 265 AYLSPERDEIVLRPEADGPEHRFPAADLPLIGQHNLENAMAAYLAAH--LVGVSDDAIRA 322
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLN 307
R HRM+ V + V + DDSK TN+ A + V++ GG K
Sbjct: 323 GARSFRPQKHRMERVGEKGE-VVFYDDSKGTNVAAVAASMRGFP-RPAVLIAGGVDK--G 378
Query: 308 GQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA 367
G + FE L + R ++ G + LI G + P +M+DAV A +A
Sbjct: 379 GSYAPMFEAL---RDVARGLVLIGEARPLIRAAASEAGAAYPVVDAESMEDAVRKAAALA 435
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
GDA+VLSP C+S+D FRNF RGM F++
Sbjct: 436 RAGDAVVLSPACSSYDMFRNFGERGMAFRD 465
>gi|213019467|ref|ZP_03335273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Wolbachia
endosymbiont of Culex quinquefasciatus JHB]
gi|212994889|gb|EEB55531.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Wolbachia
endosymbiont of Culex quinquefasciatus JHB]
Length = 443
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 110/377 (29%), Positives = 183/377 (48%), Gaps = 46/377 (12%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
++ S+++ + + K++ +TGTNGKST + +G +L G + +GGNLG P+ +
Sbjct: 93 KIKSDIELFLETKTTNQKVIGITGTNGKSTTTSLIGHILKSTGKKVAIGGNLGMPILDL- 151
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ ++ V+E SS+Q+E+ N+ +SV+LN+TPDH++RH +M NY TK
Sbjct: 152 ---------ERDAEIYVIEFSSFQLELMNE-INVDISVLLNITPDHIDRHGSMNNYIATK 201
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
L + +K+ ++ N+ I FN F G KI A +
Sbjct: 202 LKLIN---GSKIAVIGCDNK-----ITSDVFN-----KFTGNKIPISASMSPSLSSQCLG 248
Query: 207 VSQLQLHNMKVMGRH-----NYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+L+ H++ V N N VAA +V L +GVD + + I+ HR +
Sbjct: 249 TGKLENHSLSVSDVKINLVSNVEN-IVAAHAVCKL-LGVDSSTIVNEIKSFPGLRHRNEF 306
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
+ + I V +++DSKATN E+T ++ K ++GG++K G E L +
Sbjct: 307 LGK-IHNVLFINDSKATNAESTEKAILSYKN--IYWIVGGKSK------KGGIESLSKHF 357
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD---AIVLSPG 378
R G S + + N + C+ N+++A A A N AI+LSP
Sbjct: 358 TKIRKAFLIGESTEVFANIMENKIDYMKCY---NLENAFKLAFEEAINSKEEVAILLSPA 414
Query: 379 CASFDEFRNFEHRGMVF 395
C+SFD+++NFE RG F
Sbjct: 415 CSSFDQWKNFEERGEAF 431
>gi|427402717|ref|ZP_18893714.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Massilia timonae
CCUG 45783]
gi|425718523|gb|EKU81470.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Massilia timonae
CCUG 45783]
Length = 498
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 170/383 (44%), Gaps = 50/383 (13%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKF-QVA 102
K++A+TGTNGK+TV + G + G+ V GN+ S AA + Q
Sbjct: 120 KVIAITGTNGKTTVTSLTGLLCRRAGLSTRVAGNI----SPAALDVLRETIDANDLPQAW 175
Query: 103 VVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS----------- 151
V+E+SS+Q+ + VLNL+ DHL+ H +M YA K +F
Sbjct: 176 VLELSSFQLHT-TFSLQADAATVLNLSQDHLDWHGSMDAYAADKARIFGAATIRVLNRDD 234
Query: 152 ----HMVNTKLGLLPFGNQHLNEAIKGHRFNLA------WIG-AFPGVKIDTEAKTASFE 200
M FG +E ++ F L W+ A G +++ + K
Sbjct: 235 ARVMRMAAVDTPAYTFGT---DEPVEADSFGLLEERGVLWLANAVAGEEVEKKRKKNEAP 291
Query: 201 VPAVGVVSQLQLHN-MKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
P +V++L + +K+ G HN NA A G+ + L + PHR+
Sbjct: 292 EPVEAIVNRLMPADALKIRGLHNASNALAALALCRA--CGLPLAPLLHGLREYAGEPHRV 349
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDL------KGHKCVILLGGQAKVLNGQESNG 313
++V I GV + DDSK TN+ AT L L + +++ GG K GQ+
Sbjct: 350 ELVAT-IDGVDYYDDSKGTNVGATVAALTGLGKAFTGADQQILLIAGGDGK---GQD--- 402
Query: 314 FEKLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 372
F L +P+ +H R V+ G + + G +P F + ++ AV A +A GDA
Sbjct: 403 FAPLAQPVADHVRAVLLIGRDAPAVRAAVEPTG--VPAFDLDDLPQAVRRAAGLARPGDA 460
Query: 373 IVLSPGCASFDEFRNFEHRGMVF 395
++LSP CAS D F N+ HR VF
Sbjct: 461 VLLSPACASLDMFTNYAHRAQVF 483
>gi|359408617|ref|ZP_09201085.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [SAR116 cluster
alpha proteobacterium HIMB100]
gi|356675370|gb|EHI47723.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [SAR116 cluster
alpha proteobacterium HIMB100]
Length = 451
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 113/377 (29%), Positives = 179/377 (47%), Gaps = 44/377 (11%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++FA + P+ + +A+TGTNGKST G +L G A +GGN+G P++
Sbjct: 93 VISEVEFALRTSPQG-RWVAITGTNGKSTTTALTGHILRQAGKTAVIGGNIGAPVT---- 147
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+LP + + +AV+E+SSYQ+E V V+LN+TPDHL+RH Y K
Sbjct: 148 ---SLP-EQTEDSIAVIELSSYQLET-TPSLRAAVRVILNITPDHLDRHGGWDGYVSAKQ 202
Query: 148 HLFSHMVNTKLGLLPFGNQHLNE--AIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVG 205
+ +L +L G Q L++ A + H+ + +++D + A
Sbjct: 203 AILDSATKDELVILGPG-QPLDDIAADQQHKTRI--------IRLDDDCLAEEDRQKA-- 251
Query: 206 VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRD 265
Q N + G HN N A A L + ++G+ +N I HR+Q R
Sbjct: 252 -----QAGNPALQGGHNQQNCAAARL--ICRELGLTDTQINDGISSFSGLAHRLQPAGR- 303
Query: 266 IQGVTWVDDSKATNLEATCTGLMDL-KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH 324
I+ + +++DSKATN EA L + H C GG AK +G H
Sbjct: 304 IEKIQFINDSKATNGEAAAKALASFTRIHWCA---GGIAK------EDGLSACEAFFAHV 354
Query: 325 RCVITFGYSGVLIWKTLVNNGLSIPCFA--VANMKDAVNHARRMATNGDAIVLSPGCASF 382
+ +G S ++ V ++ C+ ++ AV+ A + T+ I+LSP ASF
Sbjct: 355 QHAYFYGESAPE-FEQAVAGKINSSCYDNLEKAVEAAVHSAAQTPTDEQVILLSPAAASF 413
Query: 383 DEFRNFEHRGMVFQELA 399
D+F +FE RG F ++A
Sbjct: 414 DQFTSFEARGDAFCQIA 430
>gi|222528782|ref|YP_002572664.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Caldicellulosiruptor bescii DSM 6725]
gi|254766034|sp|B9MQ99.1|MURD_ANATD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|222455629|gb|ACM59891.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
[Caldicellulosiruptor bescii DSM 6725]
Length = 457
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 114/380 (30%), Positives = 190/380 (50%), Gaps = 27/380 (7%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V+ E++ A + +S I+A+TGTNGK+T T VG++L + V GN+G P
Sbjct: 90 KKGIEVIGEIELAYRFC-KSKNIVAITGTNGKTTTTTLVGEILKKQYEDVVVCGNIGLPF 148
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
I + + + V+E+SS+Q+E KYF P + +LN+TPDHL RH TM+NY
Sbjct: 149 -------IDTIETSSEDTIFVLEISSFQLETI-KYFKPKIGCILNITPDHLNRHLTMENY 200
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPG-----VKIDTEAKTA 197
K +F ++ +L + N + I + N+ V ++ +
Sbjct: 201 TKAKMRIFENIDEMGYTVLNYDNNITRDLIGLAKGNVIVFSKTKTQFENVVFVENDVIYF 260
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+FE V+ + ++ + G+HN NA +AA+S L G++ + + ++ R H
Sbjct: 261 TFEGKTQEVMKKDEIF---IPGQHNLENA-LAAISCT-LPFGIEKDTIEQVLKTFRGVEH 315
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R++ V +I G+ + +DSK TN +A L + + +++ GG K G+ F L
Sbjct: 316 RIEFVA-EINGIKFYNDSKGTNTDAAEKALNAFE-NPIILIAGGYDK---GESFEKFASL 370
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
+ + V G + I L G F V+ +K+AV + A NGD ++LSP
Sbjct: 371 V--AKKVKKVFLLGQTKQKIASELERIGYKNFEF-VSTLKEAVRKSFECAQNGDIVLLSP 427
Query: 378 GCASFDEFRNFEHRGMVFQE 397
CAS+D F N+E RG +F+E
Sbjct: 428 ACASWDMFENYEQRGRMFKE 447
>gi|433463286|ref|ZP_20420845.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Halobacillus
sp. BAB-2008]
gi|432187796|gb|ELK45053.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Halobacillus
sp. BAB-2008]
Length = 447
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 121/400 (30%), Positives = 189/400 (47%), Gaps = 73/400 (18%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
++ G V++E++ A + ++AVTG+NGK+T T + +M+ + + GN+G+
Sbjct: 92 VERGMPVVTEVELAG--LLHEGPLVAVTGSNGKTTTTTLIHEMIKADEQKVALAGNIGHV 149
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
E A S + V E+SS+Q+ + + F P ++V LNL HL+ H T+ N
Sbjct: 150 SCEVA-------RSTEADETMVTELSSFQL-LGTEEFRPDIAVWLNLYEAHLDYHHTLHN 201
Query: 142 YALTKCHLFSH-------------------MVNTKLGLLPFGNQHLNEAIKGHRFNLAWI 182
Y K + + + TK L+PF L E KG AW+
Sbjct: 202 YHEAKARITRNQTEADTLVYNADDERIQAFLSQTKAKLVPFS---LKEKGKG-----AWV 253
Query: 183 GAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGV 240
DT FE AV ++L + ++G N N AAVA + V G+
Sbjct: 254 D-------DTHL---YFEEEAV-----IELSEIVLVGEQNLQNILAAVACVKVNGI---- 294
Query: 241 DVEALNSTIEILRT---PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI 297
+ I++LRT PHR+Q V + + + +DSKATN+ AT L + + VI
Sbjct: 295 ---RNQAIIDVLRTFAGVPHRLQFVTKK-ENRLFYNDSKATNILATSYALKSFQ--QPVI 348
Query: 298 LLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMK 357
LL G N F+ L+ L + +I FG + L+ KT + G+ V M+
Sbjct: 349 LLAGGL-----DRGNSFDSLLPYLGGVKAMIVFGETAELLMKTAEDAGIE-SVGKVDTME 402
Query: 358 DAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
+AV+ A R + D I+LSP CAS+D++R FE RG +F E
Sbjct: 403 EAVHEAYRQSEAEDVILLSPACASWDQYRTFEERGDMFIE 442
>gi|170739957|ref|YP_001768612.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Methylobacterium sp. 4-46]
gi|168194231|gb|ACA16178.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
sp. 4-46]
Length = 460
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 112/368 (30%), Positives = 167/368 (45%), Gaps = 51/368 (13%)
Query: 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
+A+TGTNGKST + +L G + +GGN+G A +A PS + +V V+E
Sbjct: 117 VAITGTNGKSTTTALIAHVLRETGHDVQMGGNIGT-----AILSLAPPS---RDRVHVIE 168
Query: 106 VSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGN 165
+SS+Q+++ P++ V+LN+TPDHL+RH TM+NYA K L + + +G+ +
Sbjct: 169 MSSFQIDL-TPTLAPSIGVLLNVTPDHLDRHGTMENYAAIKERLVAGADHAVIGV----D 223
Query: 166 QHLNEAIKGHR------------FNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLH 213
AI R I A G+ ID A+ + G+ S
Sbjct: 224 DDYTRAISARRDGPLTRVHVGEGAEAPGILARHGLLIDGTAEPPAPVADLTGIAS----- 278
Query: 214 NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
+ G HN+ NAAVA GL GV +A + PHRM+ V R GV +++
Sbjct: 279 ---LRGAHNWQNAAVAYAVARGL--GVAPDAFARALRSFPGLPHRMEEVGRR-GGVLFIN 332
Query: 274 DSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYS 333
DSKATN ++T L + +LGG+ K G E L G +
Sbjct: 333 DSKATNADSTEKALAAFP--RVHWILGGKPK------EGGIESLRAYFPRIARAYLIGAA 384
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA---IVLSPGCASFDEFRNFEH 390
TL + I C + D G+ ++LSP CAS+D+FR+FE
Sbjct: 385 SEAFAATLEGHAPVIRCGTL----DRAVARAAEDAAGEPEAVVLLSPACASYDQFRSFED 440
Query: 391 RGMVFQEL 398
RG F+ +
Sbjct: 441 RGDQFRAM 448
>gi|424660897|ref|ZP_18098144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE-16]
gi|408049959|gb|EKG85139.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE-16]
Length = 440
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 124/423 (29%), Positives = 193/423 (45%), Gaps = 72/423 (17%)
Query: 2 WML-WLFLLEFQLKATGLACL-------LQSGKRVMSELD-FAAQVIPRSIKILAVTGTN 52
W L WL + + G+A + L +G V+ +++ FA V ++A+TG+N
Sbjct: 61 WNLEWLLNADLVVTNPGIALVTPEIQQVLAAGIPVVGDIELFAWHV---DTPVIAITGSN 117
Query: 53 GKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME 112
GKSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 118 GKSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLE 168
Query: 113 IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTK-LGLLPFGNQH 167
+ + LNL+ DH++R++ M++Y K +F H +VN P +H
Sbjct: 169 TTSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDQAEH 227
Query: 168 LNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
L G +F +A + EA A E + ++GRHN
Sbjct: 228 LQVVTFGVEQAAQFTVAQHQGHEYLFARDEAVMACAE--------------LSLVGRHNV 273
Query: 224 HN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE 281
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+
Sbjct: 274 ANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVA 328
Query: 282 ATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKT 340
+T L LK + +L+GG K G + ++ L C FG G
Sbjct: 329 STLAALSGLKIAGQLYLLVGGVGK---GADFTPLAPVLATLPVQLC--CFGVDGHQF--- 380
Query: 341 LVNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
+P A D+ + R +GD ++LSP CASFD+F+NF RG +F
Sbjct: 381 -------MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFA 433
Query: 397 ELA 399
+LA
Sbjct: 434 QLA 436
>gi|323701286|ref|ZP_08112961.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfotomaculum
nigrificans DSM 574]
gi|323533888|gb|EGB23752.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfotomaculum
nigrificans DSM 574]
Length = 462
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 109/370 (29%), Positives = 173/370 (46%), Gaps = 20/370 (5%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+ EL+ A + I+A+TGTNGK+T + +GQM G V GN+G PL+
Sbjct: 104 VIGELELAYRFA--RAPIVAITGTNGKTTTTSLIGQMFRDAGYHTLVAGNIGLPLASEV- 160
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ + + V EVSS+Q+E + F P V+VVLN+TPDHL+RH +M Y K
Sbjct: 161 ------ENYSRQDIIVAEVSSFQLET-TQSFAPRVAVVLNVTPDHLDRHGSMAEYIRAKS 213
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
+F+H +L + + E + + ++ + V GV
Sbjct: 214 LIFAHQDQEDWAVLNYDDPVTREMAADCPSQVLFFSRQHILEKGIYVQDGKIMVADQGVT 273
Query: 208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQ 267
++ +++ G HN NA A + + G+ L T+E HR++ V I
Sbjct: 274 EITPVNTLRIPGAHNLENALAAVAAGYAM--GIAATDLARTLESFAGVAHRLEYVAT-ID 330
Query: 268 GVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCV 327
GV +++DSK TN +A L D +++ GG+ K G + F + I+ R +
Sbjct: 331 GVKYINDSKGTNPDAAIKAL-DAYNEPIILIAGGKNK---GSDFTQFARKIK--EKVRVL 384
Query: 328 ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
I G G I + G + + AV A + A G+ ++LSP CAS+D F N
Sbjct: 385 IVLGLHGYQIEAAARDQGFT-NILQAQDYPQAVRLAHQQARPGEVVLLSPACASWDMFNN 443
Query: 388 FEHRGMVFQE 397
FE RG +F++
Sbjct: 444 FEERGELFKQ 453
>gi|329770442|ref|ZP_08261824.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gemella sanguinis
M325]
gi|328836565|gb|EGF86225.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gemella sanguinis
M325]
Length = 446
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 106/372 (28%), Positives = 190/372 (51%), Gaps = 35/372 (9%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
+++E++ A + ++ ++A+TGTNGK+T +L + ++ GN+G P E A+
Sbjct: 95 IITEIELANTLF--NVDMVAITGTNGKTTTTQMTYDILKQSNKDVYLAGNIGYPSIEVAY 152
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ P+S + + EVSS+Q+E KYF P+++ + NL HL+ HK+++NY K
Sbjct: 153 NH---PNS-----LIITEVSSFQLE-GTKYFRPSIAAITNLGEGHLDYHKSIENYRNAKR 203
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA---FPGVKIDTEAKTASFEVPAV 204
++ + V+T +L + ++N++ I + F K +T+A + +
Sbjct: 204 KIYKNQVDTDFLILNIKEKD--------KYNISEINSNIIFYDTKFNTDADVYIKDNMVI 255
Query: 205 -GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
G V + + G HN N AA V+ G D+E++ + HR+Q V
Sbjct: 256 YGDVELFDSTKLTLPGLHNVENGINAA--VIAYKKGADIESIRKVLYNFSGVKHRLQYVG 313
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
+ +G+ + +DSKATN AT L + + V++ GGQ + ++ F +L LN
Sbjct: 314 EN-KGIKYYNDSKATNPVATINALSGFEKN-VVLICGGQDRGID------FHELSPYLNR 365
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 383
+ ++ G S I K+L + ++ C + DA A ++A GD I+LSP CAS+D
Sbjct: 366 VKTMVVVGESAD-ILKSLADKN-NVNCIKAIKIDDATEKASKLAVTGDIILLSPACASWD 423
Query: 384 EFRNFEHRGMVF 395
++++FE RG F
Sbjct: 424 QYKSFEVRGDEF 435
>gi|91228512|ref|ZP_01262434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
alginolyticus 12G01]
gi|91187946|gb|EAS74256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
alginolyticus 12G01]
Length = 437
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 116/398 (29%), Positives = 183/398 (45%), Gaps = 65/398 (16%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ +L G V+ +++ A + + + +A+TG+NGKSTV G M N G++ VGGN
Sbjct: 85 IQAVLAKGTAVVGDIELFAWAVQKPV--IAITGSNGKSTVTDLTGVMANAAGLDVGVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P AL + + V+E+SS+Q+E + + LNL+ DH++R++
Sbjct: 143 IGVP---------ALDLLEQDADLYVLELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYQ 192
Query: 138 TMKNYALTKCHLFSHMV-------------NTKLGLLPFG--NQHLNEAIKGHRFNLAWI 182
M +Y K +F+H + ++ L+ FG NQ + G+R W+
Sbjct: 193 GMSDYRQAKLRIFNHAALAVVNRDDQETFPDAEMPLVTFGSDNQDFGLEVDGNR---TWL 249
Query: 183 GAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242
+D + + + +K++G+HN NA VA + D+
Sbjct: 250 -------LDHGQRVVASD-------------ELKLVGKHNLSNALVALALLKAADVNYH- 288
Query: 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILLGG 301
+ALN T++ HR Q+V D QGV WV+DSKATN+ +T L L+ K +L+GG
Sbjct: 289 KALN-TLKNYTGLTHRCQVV-ADNQGVKWVNDSKATNIASTMAALSGLESTGKLYLLVGG 346
Query: 302 QAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVN 361
K G + + + + LN C FG G L M+D +
Sbjct: 347 VGK---GADFSPLKPIFATLNLQLCC--FGADGDEFMP------LHESAIRFDTMEDVIQ 395
Query: 362 HARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
GD ++LSP CASFD+F NF RG F LA
Sbjct: 396 QVSSQLKPGDMVMLSPACASFDQFDNFMARGDAFAALA 433
>gi|392307113|ref|ZP_10269647.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
citrea NCIMB 1889]
Length = 441
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 109/394 (27%), Positives = 191/394 (48%), Gaps = 49/394 (12%)
Query: 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
L + +A + G V+ +++ A++ + ++AVTG+NGKSTVV+ ++ G++
Sbjct: 83 LYESSVAHAIAKGVEVIGDIELFARL--NTTPVVAVTGSNGKSTVVSLATEVFKAAGLKV 140
Query: 73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
+GGN+G + L V V+E+SS+Q+E + C + +++LN+T DH
Sbjct: 141 GLGGNIGTSV---------LTLLDEPHDVYVLELSSFQLETTDSLVCRS-AMILNVTEDH 190
Query: 133 LERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV---- 188
++R+ Y K ++ H+ Q + A + F+ + G V
Sbjct: 191 MDRYPDFAGYCAAKQRIYKHV-----------EQLVFNADDEYTFSASKQGTSVSVDSGD 239
Query: 189 -KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNS 247
++ T+ A F A G V L + ++ V+GRHN NA +A +++L + +E
Sbjct: 240 YRVLTDNGMAYFS--AYGEV-LLPVDSLGVVGRHNQFNA-LAVMALLA-PFNLPIEHFKQ 294
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKV 305
+ + HR Q+V + QGV + +DSKATN+ AT L L K +++LGG AK
Sbjct: 295 AFKSFKGLEHRCQLV-AEFQGVRYFNDSKATNVGATVAALESLACERGKILLILGGDAK- 352
Query: 306 LNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR 364
+ L+ PL + + + FG G GL + V ++ AV A
Sbjct: 353 -----GADLQPLVTPLTRYCKAIFCFGQDGKQFM------GLHEKAYLVESLDAAVQQAA 401
Query: 365 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
++ +GD+++L+P CAS D + N+ RG F +L
Sbjct: 402 VLSCSGDSVLLAPACASIDMYANYMVRGEAFCKL 435
>gi|120437105|ref|YP_862791.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gramella forsetii
KT0803]
gi|158512450|sp|A0M529.1|MURD_GRAFK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|117579255|emb|CAL67724.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gramella forsetii
KT0803]
Length = 445
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 114/400 (28%), Positives = 194/400 (48%), Gaps = 51/400 (12%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G V+SE++FA+ + ++ +TG+NGK+TV V +L GI +
Sbjct: 76 KAPMIVKLKEKGISVVSEIEFASWF--SEVPVIGITGSNGKTTVTNLVQHLLKEGGINSG 133
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHL 133
+GGN+GN ++ ++ V+E+SS+Q++ K F P ++++ N+TPDHL
Sbjct: 134 MGGNIGNSYAKMV--------AEEMHDWFVLELSSFQLDGIEK-FKPHIAILTNITPDHL 184
Query: 134 ERHK-TMKNYALTKCHL---------FSHMVNTK-----LGLLPFGNQHLNEAIKGHRFN 178
+R+ ++NY +K + F + + K L P +Q L +I+ N
Sbjct: 185 DRYDYKLENYIASKFRIAENQTEEDYFIYDADDKNITDWLEKNPVRSQKLPFSIEKKIEN 244
Query: 179 LAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI 238
A+I I F +P S+L L G+HN NA A S++ +
Sbjct: 245 GAYI---ENENIVVTINNTKFTMPT----SELALQ-----GKHNAKNAMAA--SMVSQLL 290
Query: 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL 298
+ + + ++ + HR++ V + I V +++DSKATN+ AT L ++ + V +
Sbjct: 291 RIRKQTIRESMASFQGVEHRLEKVLK-INNVLYINDSKATNVNATFYALESMES-ETVWI 348
Query: 299 LGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMK 357
LGG K N ++ L+ +N + +I G I N + +M
Sbjct: 349 LGGVDK------GNVYDDLLPLVNEKVKAIICLGVDNEKIVSAFGN--IVDTMVETTSMS 400
Query: 358 DAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
+AV A R++ GD ++LSP CASFD F N+E RG F+E
Sbjct: 401 EAVQMAYRLSDKGDNVLLSPACASFDLFENYEDRGRQFKE 440
>gi|126665248|ref|ZP_01736231.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Marinobacter
sp. ELB17]
gi|126630618|gb|EBA01233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Marinobacter
sp. ELB17]
Length = 448
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 109/398 (27%), Positives = 178/398 (44%), Gaps = 74/398 (18%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
R+ ++D A+ I+A+TG+NGK+TV T V M G + VGGN+G P
Sbjct: 95 RIRGDIDLFAEAA--DAPIIAITGSNGKTTVTTLVADMARDAGYQVAVGGNIGTP----- 147
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
AL ++ V+E+SS+Q+E ++ + VLN++ DH++R+ Y K
Sbjct: 148 ----ALDLLNTGARLYVLELSSFQLETTDE-LNALAATVLNVSDDHMDRYPDKMAYYQAK 202
Query: 147 CHLF---------------SHMVNTKLGLLPFGNQHLN--------EAIKGHRFNLAWIG 183
+F + M L + FG +N +++ GH + + W
Sbjct: 203 QRIFRGCQYAIVNLDDALSTPMARNTLRFICFGMNRVNPETFSTRDDSVSGHPW-VTW-- 259
Query: 184 AFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVE 243
G+ + ++ + ++GRHN N +AAL LG G+ ++
Sbjct: 260 ---------------------GLDNLIRADELGLVGRHNLSN-VMAALG-LGKAAGLPMD 296
Query: 244 ALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL--KGHKCVILLGG 301
++ +T PHR + + R + GV +++DSK TN+ AT L L K V++ GG
Sbjct: 297 SMLATARAFHGLPHRCESL-RLVNGVEYINDSKGTNVGATVAALDSLAPAAGKIVLIAGG 355
Query: 302 QAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAV 360
K + F L +P H R V+ G + + L ++ DAV
Sbjct: 356 DGKGAD------FSPLADPARRHCRAVVLIGRDAAQLQEVLAQG---TATHIENSLADAV 406
Query: 361 NHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
A R+A GD ++LSP CAS D FR++ RG F+ L
Sbjct: 407 ASAARLAQPGDRVLLSPACASLDMFRDYIDRGERFRTL 444
>gi|124026491|ref|YP_001015606.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Prochlorococcus marinus str. NATL1A]
gi|123961559|gb|ABM76342.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
marinus str. NATL1A]
Length = 469
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 105/385 (27%), Positives = 191/385 (49%), Gaps = 41/385 (10%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V E++ A + + I + +TGTNGK+TV + +L + +GGN+G LS+ A
Sbjct: 104 VQGEVELAWERLTH-IPSIGITGTNGKTTVTNMLNHILKLNNLNTDMGGNIGKALSKIAL 162
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ ++ + V+E+SS+Q+E K PT+ + TPDHLERH +++Y K
Sbjct: 163 E--NMKNNNQELNWLVLELSSFQIEGSPK-VAPTIGIWTTFTPDHLERHNDIESYFKIKR 219
Query: 148 HLFS----HMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203
L + N+ L + L + I W+G + ++ F +
Sbjct: 220 SLLEKSSIRIYNSDDQFLSSKRKELPKGI--------WVGT---NQQSFYSEYQKFWIDQ 268
Query: 204 VGVV--SQLQLHN---MKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
G + + QL + +K+ G+HN N + + +IG+D ++ +I+ R+ PHR
Sbjct: 269 KGYIFEDKKQLFHSSILKIPGKHNLQNLLLVIAA--AREIGLDDSSIAKSIKSFRSIPHR 326
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
++ + + I +++ +DSKATN +++ TGL + H ++L GG Q+ F +
Sbjct: 327 LEYLGK-INNLSFYNDSKATNFDSSITGLKSVP-HPIILLAGGI------QKKGDFMPWV 378
Query: 319 EPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDA----VNHARRMATNGDAI 373
+ + ++ FG S + + L+ + + N+++A +N AR TN +I
Sbjct: 379 KQIKQSTNGIVLFGLSANNLKEELLMSSYTGEIIIKKNLEEATIASINIARE--TNSRSI 436
Query: 374 VLSPGCASFDEFRNFEHRGMVFQEL 398
+LSP CASFD+++N+E RG F+ L
Sbjct: 437 LLSPACASFDQYKNYEERGDHFKNL 461
>gi|121535920|ref|ZP_01667716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosinus
carboxydivorans Nor1]
gi|121305491|gb|EAX46437.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosinus
carboxydivorans Nor1]
Length = 449
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 119/381 (31%), Positives = 184/381 (48%), Gaps = 33/381 (8%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G VMSE++ A ++ P I+A+TGTNGK+T T VG+ML G E VGGN+G LS+
Sbjct: 90 GIPVMSEIEVAYRLCP--APIIAITGTNGKTTTTTLVGEMLKAAGREVVVGGNIGLALSQ 147
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
+ + + V E+SS+Q+E F P ++ VLNLTPDHL+RH+++ NY
Sbjct: 148 EV-------AGISEHGIVVAEISSFQLEGVVD-FRPRIAAVLNLTPDHLDRHRSLDNYKA 199
Query: 145 TKCHLFSHMVNTKLGLL----PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFE 200
K +F + +L P A F G +++ E +E
Sbjct: 200 MKERIFRNQRPDDYLVLNYDDPLVRDMAERAPSQAVFFSRKARLSTGARLEDETIVMCWE 259
Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPH 257
+ + MK+ G HN NA A+ + + +LRT H
Sbjct: 260 GKTEAICP---VKEMKLFGAHNIENALAASCVAF-----LAGADAGAIGAVLRTFMGVEH 311
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R++ V +I+GV + +DSKATN E+ L GH +++ GG+ K + E K
Sbjct: 312 RIEPVA-EIRGVRYYNDSKATNPESAIKALEAFDGH-IILIAGGRDKKTDLTEFMELAK- 368
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
+ ++H +I G + ++ +G++ V +DAV A R+A ++LSP
Sbjct: 369 -QKVDH---LILLGEAKERFYQAAAAHGVT-NIHLVDKFEDAVTLAYRLARPPQVVLLSP 423
Query: 378 GCASFDEFRNFEHRGMVFQEL 398
CAS+D F N+E RG VF+EL
Sbjct: 424 ACASYDMFNNYEERGRVFKEL 444
>gi|15902647|ref|NP_358197.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae R6]
gi|116515762|ref|YP_816097.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae D39]
gi|419481711|ref|ZP_14021505.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA40563]
gi|421265721|ref|ZP_15716604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SPAR27]
gi|30316022|sp|Q8DQM2.1|MURD_STRR6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|122279017|sp|Q04LK1.1|MURD_STRP2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|15458185|gb|AAK99407.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae R6]
gi|116076338|gb|ABJ54058.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae D39]
gi|379581390|gb|EHZ46275.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA40563]
gi|395868457|gb|EJG79574.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SPAR27]
Length = 450
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 105/368 (28%), Positives = 181/368 (49%), Gaps = 25/368 (6%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P S+ A
Sbjct: 99 VLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYPASQVA- 155
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ S K V+E+SS+Q+ + + F P ++V+ NL P H++ H + Y K
Sbjct: 156 ---QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSEYVAAKW 208
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
++ + M +L F NQ L + + A + F ++ A ++ G V
Sbjct: 209 NIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDGAYLEDGQLYFRGEV 265
Query: 208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQ 267
+ + + V G HN N A+A ++V L VD + + T+ HR+Q V DI+
Sbjct: 266 V-MAANEIGVPGSHNVEN-ALATIAVAKLR-DVDNQTIKETLSAFGGVKHRLQFVD-DIK 321
Query: 268 GVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCV 327
GV + +DSK+TN+ AT L K V++ GG + N F++L+ + + +
Sbjct: 322 GVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDITGLKKM 375
Query: 328 ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ G S + + G++ ++ DA A +AT GD ++LSP AS+D + N
Sbjct: 376 VILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANASWDMYAN 433
Query: 388 FEHRGMVF 395
FE RG +F
Sbjct: 434 FEVRGDLF 441
>gi|350564698|ref|ZP_08933515.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalimicrobium
aerophilum AL3]
gi|349777717|gb|EGZ32080.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalimicrobium
aerophilum AL3]
Length = 448
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 114/398 (28%), Positives = 186/398 (46%), Gaps = 45/398 (11%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
L+ L Q G ++ +++ A+ S I+ +TG+NGKSTV + +L G
Sbjct: 70 IDLRQPWLQVFRQKGIDIIGDIELFARAA--SAPIIGITGSNGKSTVTSLTASLLTAGGY 127
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT-VSVVLNLT 129
+ +GGN+G +AA + + + V V+E+SS+Q++ Y T S VLN+
Sbjct: 128 KTGMGGNIG----KAALDLLL---EEQNYDVFVLELSSFQLD--TTYSLHTCASTVLNIC 178
Query: 130 PDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVK 189
DHL+R+ M Y +K ++ +T+L ++P L+E N+ F G++
Sbjct: 179 EDHLDRYDGMDAYIQSKNTIYQ---DTELAVMP-----LDEPTPFWVPNITPKQYF-GLQ 229
Query: 190 IDTEAKTASFEVP-------AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242
A+ EV A G + + +K+ H NA + V DI D
Sbjct: 230 PPRSARDWGIEVDLDGLSYLAQGEKRLMPVSELKLQAPHQLLNALASLALVQEFDI--DD 287
Query: 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVIL 298
+ + PHR + V + Q +TW++DSK TN+ AT T + + + K V+L
Sbjct: 288 TIVQQVLRNFAGLPHRTEWVAQFNQ-ITWINDSKGTNVGATLTAVKSMGSAIQPAKLVLL 346
Query: 299 LGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMK 357
GG AK + L +PL R I +G +++ + +PC V +
Sbjct: 347 AGGDAKGAD------MAPLAQPLAEFARAAIVYGRDAAQLYQAWSAH---LPCHHVQTLD 397
Query: 358 DAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
+AVN A +A GD ++LSP CAS D+F N++HRG F
Sbjct: 398 EAVNLAASLAQAGDTVLLSPACASLDQFDNYQHRGRHF 435
>gi|298207886|ref|YP_003716065.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Croceibacter
atlanticus HTCC2559]
gi|83850527|gb|EAP88395.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Croceibacter atlanticus HTCC2559]
Length = 445
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 103/377 (27%), Positives = 190/377 (50%), Gaps = 33/377 (8%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
++SE++FA++ +I + +TG+NGK+TV + +L G+ A VGGN+G+ ++
Sbjct: 90 IVSEIEFASEFTNATI--IGITGSNGKTTVTRWTHHILKEGGLNASVGGNIGDSFAKQ-- 145
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTK 146
+AL S+ V+E+SS+Q++ K F P ++++ N+TPDHL+R+ Y +K
Sbjct: 146 --VALSPSEN----YVLELSSFQLD-DIKNFRPHIAIITNITPDHLDRYDYDFSKYVASK 198
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
+ + N + N+ +N+ ++ H + P + A E + +
Sbjct: 199 FRITMNQTNDDYLIYDADNEAINDYLEAHTIQPKLV---PFSTTKSLKYGAYIEHNELII 255
Query: 207 -VSQLQLH----NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+ + ++H ++ + G HN NA ++ + L I + + ++ + HR++
Sbjct: 256 NIDENKIHMPIDSLALKGTHNQKNAMASSSAAKMLKIRK--QTIRESLANFQGVEHRLEH 313
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V + I V +++DSKATN+ AT L + + ++GG K N + +L +
Sbjct: 314 VLK-INNVNYINDSKATNVNATFYALESMSSD-TIWIVGGVDK------GNDYSQLNALV 365
Query: 322 NHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 380
N + +I G I K NN + I +M +A+ A ++ GDA++LSP CA
Sbjct: 366 NEKVKAIICLGVDNQKILKAF-NNCVDI-MVETQSMSEAIKIAYKIGERGDAVLLSPACA 423
Query: 381 SFDEFRNFEHRGMVFQE 397
SFD F+N+E RG F+E
Sbjct: 424 SFDLFKNYEDRGRQFKE 440
>gi|257439004|ref|ZP_05614759.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Faecalibacterium prausnitzii A2-165]
gi|257198589|gb|EEU96873.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Faecalibacterium prausnitzii A2-165]
Length = 467
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 118/391 (30%), Positives = 183/391 (46%), Gaps = 42/391 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+ +G V SE++ P +I+AVTG++GK+T T + + G + +GGN+G
Sbjct: 100 MAAGTMVTSEVELFFDFCP--CEIVAVTGSDGKTTTTTLISKFYEAAGRKVHLGGNIGAA 157
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
L LP +P+ VAVVE+SS+Q+ + + P ++VV N+TP+HL+ HK M+
Sbjct: 158 L------LPMLPEVRPE-DVAVVELSSFQL--ISMHQSPKIAVVTNVTPNHLDHHKDMQE 208
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--------GAFPGVKIDTE 193
Y K ++ + +L + N+ K + W GAF
Sbjct: 209 YIDAKRNILLYQNPPCRAVLGYENEISRSMQKDCKGRQVWFTRLHDTDNGAF------LR 262
Query: 194 AKTASFEVPAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
+ + GVV+ L ++K+ G HN N AA +V G V VEA+
Sbjct: 263 KEDNMLCMAEDGVVTPFLAQKDIKLRGLHNIENLLAAAAAVWG---EVPVEAIQKVGSTF 319
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
HR++ V R + GV + +DS T+ T GL K +++ GG K +
Sbjct: 320 TGVEHRIEPV-RTLDGVLYYNDSIGTSPTRTIAGLRSFD-QKVILIAGGYDKHIP----- 372
Query: 313 GFEKLI-EPLNHHRCVITFGYSGVLIWKTLVN----NGLSIPCFAVANMKDAVNHARRMA 367
+E L E + H + ++ G +G I K L N ++P NM+ AV AR A
Sbjct: 373 -YEPLAPEIVAHVKDLVLMGATGPRIEKALREDPGFNEAALPIQHADNMQHAVELARAAA 431
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
GD I+LSP ASFD + NFE RG F+ +
Sbjct: 432 KPGDIIILSPASASFDLYPNFEVRGREFKNI 462
>gi|417825623|ref|ZP_12472211.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE48]
gi|422308334|ref|ZP_16395485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1035(8)]
gi|340047108|gb|EGR08038.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE48]
gi|408617803|gb|EKK90908.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1035(8)]
Length = 440
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 125/423 (29%), Positives = 194/423 (45%), Gaps = 72/423 (17%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELD-FAAQVIPRSIKILAVTGTN 52
W L WL + + G+A +L +G V+ +++ FA V ++A+TG+N
Sbjct: 61 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV---DTPVIAITGSN 117
Query: 53 GKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME 112
GKSTV G + N +G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 118 GKSTVTDLSGVLANAVGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLE 168
Query: 113 IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQH 167
+ + LNL+ DH++R++ M++Y K +F H +VN P H
Sbjct: 169 TTSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAH 227
Query: 168 LNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
L G +F+LA + EA A E + ++GRHN
Sbjct: 228 LQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------LSLVGRHNV 273
Query: 224 HN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE 281
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+
Sbjct: 274 ANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVA 328
Query: 282 ATCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKT 340
+T L LK + +L+GG K G + ++ L C FG G
Sbjct: 329 STLAALSGLKIEGQLYLLVGGVGK---GADFTPLAPVLATLPVQLC--CFGVDGHQF--- 380
Query: 341 LVNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
+P A D+ + R +GD ++LSP CASFD+F+NF RG +F
Sbjct: 381 -------MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFA 433
Query: 397 ELA 399
+LA
Sbjct: 434 QLA 436
>gi|295706370|ref|YP_003599445.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
megaterium DSM 319]
gi|294804029|gb|ADF41095.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
megaterium DSM 319]
Length = 449
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 184/386 (47%), Gaps = 36/386 (9%)
Query: 20 CLLQSG-KR---VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVG 75
LLQ KR +++E++ A ++ + +TG+NGK+T T + +ML + +
Sbjct: 86 VLLQEALKRNIPILTEVELAYEI--SEAPFIGITGSNGKTTTTTLIYKMLEEDQKQPLIA 143
Query: 76 GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLER 135
GN+G E A K V V E+SS+Q+ K F P +S++LNL HL+
Sbjct: 144 GNIGTVACEVA-------QKATKDNVIVTELSSFQLMGIEK-FRPKISLLLNLFDAHLDY 195
Query: 136 HKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEA---IKGHRFNLAWIG-AFPGVKID 191
H T + Y K +LF++ + ++ ++ + +A +K + + G I
Sbjct: 196 HGTKEEYIKAKANLFNNQTSEDFAVINADDELVMKASADVKATKVPFSVTAQTTEGAYIK 255
Query: 192 TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
E T F+ V + L ++ + G+HN N +AA+SV+ L G EA+ +
Sbjct: 256 NE--TIFFKDEEV-----MSLKDVVLPGKHNQENI-LAAVSVVKL-YGCSNEAIYRVLTT 306
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQES 311
HR+Q V I + +DSKATN+ AT L ++L GG +
Sbjct: 307 FAGVKHRVQYVTT-INKRKFYNDSKATNMLATKVALSAF-SQPTILLAGGLDR------G 358
Query: 312 NGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD 371
N F+ L E + + VITFG + I + G+ I V N+K AV+ A + D
Sbjct: 359 NEFDDLKEEFKNVKAVITFGETAPKIERVAKEAGIQI-VKRVDNVKQAVSEAYAYSDEED 417
Query: 372 AIVLSPGCASFDEFRNFEHRGMVFQE 397
I+LSP CAS+D+F+ FE RG +F E
Sbjct: 418 VILLSPACASWDQFKTFEERGDIFIE 443
>gi|188585928|ref|YP_001917473.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|226722938|sp|B2A2H0.1|MURD_NATTJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|179350615|gb|ACB84885.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 461
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 114/391 (29%), Positives = 199/391 (50%), Gaps = 40/391 (10%)
Query: 25 GKRVMSELDFAAQVIPRSI-----KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG 79
G V+ EL+ Q++ + +++AVTGTNGK+T +G+ G +V GN+G
Sbjct: 93 GMPVIDELELGYQILNYRLTKPEERLIAVTGTNGKTTTTNLIGEFFEASGYSIYVAGNVG 152
Query: 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTM 139
PLS+ IA + F V+EVSS+Q+E K F P VS++LN+TPDHL+ H +
Sbjct: 153 LPLSQ-----IACEVTDTDF--IVLEVSSFQLEFI-KGFRPKVSMILNITPDHLDWHGDL 204
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQH---LNEAIKGHRFN-----LAWIGAFPGVKID 191
+Y K ++F + + ++ ++ LN KG + N L G+F I+
Sbjct: 205 DSYIRAKMNIFKNQTSKDFSVVNVDDETTFGLNRESKGRKLNFSKNSLRTEGSF----IE 260
Query: 192 TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
+ ++ ++ + H++ + G HN N A + L I E + +T++
Sbjct: 261 DDHLVINYLDTKTSIIHK---HDILLPGEHNLENVLAATTATLPFSISE--ENIRNTLKA 315
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQES 311
HR+++V R++ GV +++DSK TN+EA+ + +++ GG+ K G +
Sbjct: 316 FSGVDHRLELV-RELNGVKFINDSKGTNVEASLKAINSFDS--MILIAGGKDK---GADF 369
Query: 312 NGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIP-CFAVANMKDAVNHARRMATNG 370
+ F + I+ + V FG + I L + + P + V N++ AV A + A +G
Sbjct: 370 SEFAEAIKEKGVKK-VYLFGETYKKIASAL--DKVYYPEYYIVNNLETAVTGAYQDAISG 426
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVFQELAFS 401
D ++LSP CAS+D + +FE RG F+ + +S
Sbjct: 427 DVVLLSPACASWDMYDSFEKRGNHFKSIVYS 457
>gi|387121181|ref|YP_006287064.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|415756273|ref|ZP_11481011.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416038508|ref|ZP_11574159.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|416044367|ref|ZP_11574994.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|416055534|ref|ZP_11579588.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|416071304|ref|ZP_11583769.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|429733334|ref|ZP_19267581.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans Y4]
gi|444333734|ref|ZP_21149452.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
gi|347994966|gb|EGY36196.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|347996252|gb|EGY37355.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|347998646|gb|EGY39557.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|348002942|gb|EGY43604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|348655844|gb|EGY71275.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|385875673|gb|AFI87232.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|429155066|gb|EKX97767.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans Y4]
gi|443551351|gb|ELT59253.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
Length = 434
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 127/420 (30%), Positives = 194/420 (46%), Gaps = 74/420 (17%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA LQ+G V+ +++ + + I +A+TG+NGKSTV
Sbjct: 61 WLLESDLIVISPGLAVKTPEIQTALQAGVEVLGDIELFCREADKPI--VAITGSNGKSTV 118
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G+ +GGN+G P AL ++ + V+E+SS+Q+E Y
Sbjct: 119 TTLVAEMAKAAGLRVGMGGNIGIP---------ALSLLNQQYDLYVLELSSFQLE--TTY 167
Query: 118 FCPTV-SVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL-LP--------- 162
V + VLN+T DH+ R+ +++Y K ++++H ++N + L LP
Sbjct: 168 SLKAVAATVLNVTEDHMNRYMDLQDYRHAKLNIYNHCQTAVINAEDALTLPATQRPQKQV 227
Query: 163 -FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRH 221
FG H + +K N ++ A+ EA A E MK+ GRH
Sbjct: 228 SFGENHADYWLKTEN-NKTYLMAYD------EAVLACDE--------------MKLTGRH 266
Query: 222 NYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE 281
NY NA A G+++ + + + HR Q+ H GV W++DSKATN+
Sbjct: 267 NYMNALAAIALAQA--AGINLTGIRTALCAFGGLEHRFQVAHI-ADGVRWINDSKATNVG 323
Query: 282 ATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLI-EPLNHHRCVITFGYSGVLIWK 339
+T L L+ K +LLGG K G + + +LI +P H C FG G K
Sbjct: 324 STVAALTGLQVAGKLHLLLGGDGK---GADFSELARLINQP--HINCYC-FGRDG----K 373
Query: 340 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
L LS M+ A+ R GD ++LSP CAS D+F FE RG F L+
Sbjct: 374 QLA--ALSSQSQLFDTMEHAIAAIRPQLQAGDMVLLSPACASLDQFSCFEARGDEFTRLS 431
>gi|301310866|ref|ZP_07216795.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
20_3]
gi|300830929|gb|EFK61570.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
20_3]
Length = 445
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 112/406 (27%), Positives = 191/406 (47%), Gaps = 65/406 (16%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G ++SE++FA + K++ +TG+NGK+T +L G++
Sbjct: 76 KAPIIQLLKKQGTPIISEIEFAGRYTDS--KMICITGSNGKTTTTMLTYHILKEAGVDVG 133
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+GN L AL ++ V V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 134 LAGNVGNSL--------ALQVAEDPHAVYVIELSSFQLD--NMYDFRADIAIILNITPDH 183
Query: 133 LERHK-TMKNYALTKCHLFSHMVNT---------------------KLGLLPFGNQHLNE 170
L+R+ M+NY K + + K L PF H N
Sbjct: 184 LDRYNYEMQNYVDAKFRILQNQTKDDAFIFWNDDPIIAREIAKRHPKATLYPFAETHEN- 242
Query: 171 AIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAA 230
+KG+ N V I+T T + E + + G HN +N+ +
Sbjct: 243 GVKGYTEN-------NQVVIETVNGTFTMEQDLLALT-----------GTHNLYNSLASG 284
Query: 231 LSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL 290
++ +DI E + +++ HR++ V R ++GV +++DSKATN+ + L +
Sbjct: 285 IASKIVDIHD--EKIRASLSDFTGVEHRLEKVLR-VRGVDYINDSKATNVNSCWYALQSM 341
Query: 291 KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPC 350
V++LGG K G + + E+L+ H +I G + +G
Sbjct: 342 TT-PVVLILGGTDK---GNDYSEIEELVNKKVH--SLIFMGVDNTKLHAFF--DGKVANI 393
Query: 351 FAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
+M++AV A +MA GD ++LSP CASFD F+++E RG F+
Sbjct: 394 EDARSMEEAVAKAYKMAHKGDTVLLSPCCASFDLFKSYEDRGDQFK 439
>gi|423339277|ref|ZP_17317018.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides
distasonis CL09T03C24]
gi|409231179|gb|EKN24036.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides
distasonis CL09T03C24]
Length = 441
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 112/406 (27%), Positives = 191/406 (47%), Gaps = 65/406 (16%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G ++SE++FA + K++ +TG+NGK+T +L G++
Sbjct: 72 KAPIIQLLKKQGTPIISEIEFAGRYTDS--KMICITGSNGKTTTTMLTYHILKEAGVDVG 129
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+GN L AL ++ V V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 130 LAGNVGNSL--------ALQVAEDPHAVYVIELSSFQLD--NMYDFRADIAIILNITPDH 179
Query: 133 LERHK-TMKNYALTKCHLFSHMVNT---------------------KLGLLPFGNQHLNE 170
L+R+ M+NY K + + K L PF H N
Sbjct: 180 LDRYNYEMQNYVDAKFRILQNQTKDDAFIFWNDDPIIAREIAKRHPKATLYPFAETHEN- 238
Query: 171 AIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAA 230
+KG+ N V I+T T + E + + G HN +N+ +
Sbjct: 239 GVKGYTEN-------NQVVIETVNGTFTMEQDLLALT-----------GTHNLYNSLASG 280
Query: 231 LSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL 290
++ +DI E + +++ HR++ V R ++GV +++DSKATN+ + L +
Sbjct: 281 IASKIVDIHD--EKIRASLSDFTGVEHRLEKVLR-VRGVDYINDSKATNVNSCWYALQSM 337
Query: 291 KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPC 350
V++LGG K G + + E+L+ H +I G + +G
Sbjct: 338 TT-PVVLILGGTDK---GNDYSEIEELVNKKVH--SLIFMGVDNTKLHAFF--DGKVANI 389
Query: 351 FAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
+M++AV A +MA GD ++LSP CASFD F+++E RG F+
Sbjct: 390 EDARSMEEAVAKAYKMAHKGDTVLLSPCCASFDLFKSYEDRGDQFK 435
>gi|419766864|ref|ZP_14293039.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
mitis SK579]
gi|383353635|gb|EID31240.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
mitis SK579]
Length = 450
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 103/374 (27%), Positives = 182/374 (48%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGKHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVA-------QTASDADTLVMELSSFQL-MGIQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKELATK--TQATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L VD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATITVAKLR-SVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V +I+G+ + +DSK+TN+ AT L K +++ GG + N F++L+ +
Sbjct: 317 VD-EIKGIKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ V+ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKVVILGQSAERVKRAADKAGVT--YVDATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|298387941|ref|ZP_06997490.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
1_1_14]
gi|383125035|ref|ZP_09945694.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
1_1_6]
gi|62900586|sp|Q8A256.2|MURD_BACTN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|251840813|gb|EES68894.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
1_1_6]
gi|298259348|gb|EFI02223.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
1_1_14]
Length = 444
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 110/396 (27%), Positives = 191/396 (48%), Gaps = 57/396 (14%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+SE++FA + K++ +TG+NGK+T + + + + + GN+G
Sbjct: 82 LKAQGTPVISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSADLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEEHHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHL-NEAIKGHRFNLAWI---GAFPGVKI 190
M+NY K + + + P Q L +K H + A + GA V+
Sbjct: 190 MQNYIDAKFRITQNQTTDDAFIFWNDDPIIKQELAKHGLKAHLYPFAAVKEDGAIAYVE- 248
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTI 249
D E K + ++ + + G+HN +N+ A +S L G+ E + +
Sbjct: 249 DHEVKITE------PIAFNMEQEELALTGQHNLYNSLAAGISANLA---GITKENIRKAL 299
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
+ HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K
Sbjct: 300 SDFKGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK----- 352
Query: 310 ESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGL-------SIPCFAV-ANMKDAVN 361
N + + IE L +C L++ L N L +P V MKDAV
Sbjct: 353 -GNDYTE-IEDLVREKC-------SALVYLGLHNEKLHAFFDRFGLPVADVQTGMKDAVE 403
Query: 362 HARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
A ++A G+ ++LSP CASFD F+++E RG F++
Sbjct: 404 AAYKLAKKGETVLLSPCCASFDLFKSYEDRGDQFKK 439
>gi|117922177|ref|YP_871369.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
sp. ANA-3]
gi|117614509|gb|ABK49963.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
ANA-3]
Length = 439
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 114/381 (29%), Positives = 181/381 (47%), Gaps = 43/381 (11%)
Query: 22 LQSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+ +++ FA ++ R ++ +TG+NGKSTV T VG+ML G+ VGGN+G
Sbjct: 87 LDMGIEVIGDVELFAREIADRKPCVIGITGSNGKSTVTTLVGEMLREAGMAVAVGGNIGI 146
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P AL + V+E+SS+Q+E + C S LN+T DH++R+ M
Sbjct: 147 P---------ALDLLTENADIFVLELSSFQLETTHSLNC-VASTCLNVTEDHMDRYSDMD 196
Query: 141 NYALTKCHLFSH---MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K L+ ++ + L + +N+ + F LA D++
Sbjct: 197 AYRKAKLRLYHQSRSIIFNRDDALTIPTEPMNQ----NSFGLAPPEGDEWGICDSKIYHG 252
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
E+ + + + ++G HN+ N +AA++++ +GV+ + + H
Sbjct: 253 HSEI--------MPITEVSLIGSHNHAN-LLAAMALV-YAVGVEKQVMAKVARTFTGLSH 302
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKVLNGQESNGFE 315
R ++V GVT+V+DSKATN+ AT L L H +++ GG K + F
Sbjct: 303 RCEVVGVK-AGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDGKGAD------FS 355
Query: 316 KLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
L+EPL +IT G G I L V +M AV A +AT+GD ++L
Sbjct: 356 PLVEPLTKVTHLITLGRDGNKIA------ALKEGAIKVDSMAAAVAKAAELATSGDIVLL 409
Query: 376 SPGCASFDEFRNFEHRGMVFQ 396
SP CAS D + NF RG F+
Sbjct: 410 SPACASLDMYSNFMARGDDFR 430
>gi|258625125|ref|ZP_05720042.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
VM603]
gi|258582576|gb|EEW07408.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
VM603]
Length = 440
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 118/427 (27%), Positives = 191/427 (44%), Gaps = 80/427 (18%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + + ++A+TG+NG
Sbjct: 61 WNLEWLLSADLVVTNPGIALATPEIQQVLAAGLPVVGDIELFAWHVDK--PVIAITGSNG 118
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++ VGGN+G P AL P+ ++ V+E+SS+Q+E
Sbjct: 119 KSTVTDLSGVLANAAGVKTAVGGNIGVP---------ALDLISPEVELYVLELSSFQLET 169
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIK 173
+ + LNL+ DH++R++ M++Y K +F H +
Sbjct: 170 TSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVV--------------- 213
Query: 174 GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ--------------LQLHNMKVMG 219
N + FP + T E PA V++ L + ++G
Sbjct: 214 ----NADDVQTFPDHAAHLQVVTFGVEQPAQFSVAEHQGREYLFARDNAVLASSELSLVG 269
Query: 220 RHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
RHN N +A L G+++ + ++AL S + HR Q+V D G+ WV+DSKA
Sbjct: 270 RHNVANVLTVLALLDSAGVNVRLALDALKSYTGLT----HRCQVV-ADNHGIKWVNDSKA 324
Query: 278 TNLEATCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVL 336
TN+ +T L LK + +L+GG K G + + L C FG
Sbjct: 325 TNVASTLAALSGLKIEGQLYLLVGGVGK---GADFTPLAPVFATLPLQLC--CFG----- 374
Query: 337 IWKTLVNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 392
V+ +P A D+ + R +GD ++LSP CASFD+F+NF RG
Sbjct: 375 -----VDGDKFMPLHPSARFYDSMESIIRSIRPELKSGDMVLLSPACASFDQFKNFMARG 429
Query: 393 MVFQELA 399
+F +LA
Sbjct: 430 DIFAQLA 436
>gi|421217179|ref|ZP_15674080.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070335]
gi|395584665|gb|EJG45057.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070335]
Length = 450
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 105/368 (28%), Positives = 181/368 (49%), Gaps = 25/368 (6%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P S+ A
Sbjct: 99 VLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYPASQVA- 155
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ S K V+E+SS+Q+ + + F P ++V+ NL P H++ H + Y K
Sbjct: 156 ---QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSEYVADKW 208
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
++ + M +L F NQ L + + A + F ++ A ++ G V
Sbjct: 209 NIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDGAYLEDGQLYFRGEV 265
Query: 208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQ 267
+ + + V G HN N A+A ++V L VD + + T+ HR+Q V DI+
Sbjct: 266 V-MAANEIGVPGSHNVEN-ALATIAVAKLR-DVDNQTIKETLSAFGGVKHRLQFVD-DIK 321
Query: 268 GVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCV 327
GV + +DSK+TN+ AT L K V++ GG + N F++L+ + + +
Sbjct: 322 GVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDITGLKKM 375
Query: 328 ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ G S + + G++ ++ DA A +AT GD ++LSP AS+D + N
Sbjct: 376 VILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANASWDMYAN 433
Query: 388 FEHRGMVF 395
FE RG +F
Sbjct: 434 FEVRGDLF 441
>gi|423304794|ref|ZP_17282793.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
uniformis CL03T00C23]
gi|423310092|ref|ZP_17288076.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
uniformis CL03T12C37]
gi|392682732|gb|EIY76074.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
uniformis CL03T12C37]
gi|392683458|gb|EIY76793.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
uniformis CL03T00C23]
Length = 443
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 107/392 (27%), Positives = 190/392 (48%), Gaps = 51/392 (13%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+GN
Sbjct: 81 LKEKGTPIISEIEFAGRYT--DAKMVCITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGN 138
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL + + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 139 SL--------ALQVATEQHDYYVIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 188
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID-----TE 193
M+ Y K + + + + + + + H A + F VK D E
Sbjct: 189 MQKYVDAKFRITQNQTSEDAFIFWNDDPIIKRELDKHGLR-AHLYPFAAVKEDGAIAYVE 247
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTIEIL 252
P + ++ + + G HN +N+ A +S L G+ E + +
Sbjct: 248 DGEVEINEP---IAFNMEQEELALHGTHNLYNSLAAGISANLA---GIRKEYIRKALSDF 301
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
+ HR++ V ++GV++++DSKATN+ + L + G K V++LGG+ K N
Sbjct: 302 KGVEHRLEKVAT-VRGVSFINDSKATNVNSCWYALQSMTG-KTVLILGGKDK------GN 353
Query: 313 GFEKLIEPLNHHRCVITFGYSGVLIWKTLVN-------NGLSIPCFAV-ANMKDAVNHAR 364
+ + IE L +C L++ L N + L +P V M+DAV A
Sbjct: 354 DYTE-IEDLVREKC-------SALVYLGLHNEKLHAFFDRLGLPVADVQTGMQDAVEAAF 405
Query: 365 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
++A G+ ++LSP CASFD F+++E RG F+
Sbjct: 406 KLAKKGETVLLSPCCASFDLFKSYEDRGDQFK 437
>gi|42565383|gb|AAS20968.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Hyacinthus
orientalis]
Length = 103
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/100 (62%), Positives = 75/100 (75%)
Query: 303 AKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNH 362
AKV+N Q + GFE+L+E L R V+TFG +G +I KTL+ GL+IPC N+++AVN
Sbjct: 1 AKVVNDQVARGFEQLVELLECRRGVVTFGSAGAMIHKTLIGGGLTIPCIDTTNLEEAVNC 60
Query: 363 ARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFSA 402
AR MA GD I+LSPGCASFDEFRNFEHRG VFQELA S
Sbjct: 61 ARTMAKAGDMILLSPGCASFDEFRNFEHRGKVFQELARSG 100
>gi|311068041|ref|YP_003972964.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
atrophaeus 1942]
gi|310868558|gb|ADP32033.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
atrophaeus 1942]
Length = 451
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 109/375 (29%), Positives = 178/375 (47%), Gaps = 28/375 (7%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V +E++ A V K + +TG+NGK+T T + +ML +A + GN+G
Sbjct: 95 KRGIPVWTEIELAYYVT--DAKFIGITGSNGKTTTTTLIYEMLKADSQKALIAGNIGTVA 152
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
SE A+H + V E+SS+Q+ + F P +S++LN+ HL+ H + +NY
Sbjct: 153 SEVAYHA-------DGDEWIVTELSSFQL-MGTHAFRPHISLILNVFDAHLDYHHSRENY 204
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K +++ H + + ++ NQ ++ A AF K +
Sbjct: 205 EKAKQNVYLHQLESDTAVV---NQDDETVVRLAEAGKAASLAFSATKPLERGACVKDGMI 261
Query: 203 AVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
+ L L ++ + G HN N AAVA + G EA+ + HR+Q
Sbjct: 262 LFDNEAILSLEDVVLPGAHNLENILAAVAVVKT----AGASNEAIKKVLTSFTGVKHRLQ 317
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP 320
V IQ + +DSKATN+ AT L + K V+LL G NGF++L
Sbjct: 318 YV-TTIQDRKFYNDSKATNVLATSKALSAFE--KPVLLLAGGL-----DRGNGFDELKPY 369
Query: 321 LNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 380
+ + + ++TFG + + K G+ V N++ AV+ A ++ GD I+LSP CA
Sbjct: 370 MQNVKAILTFGQTAPKLEKLGAELGIQ-HVKRVDNVEQAVSAAFALSNEGDVILLSPACA 428
Query: 381 SFDEFRNFEHRGMVF 395
S+D+F+ FE RG +F
Sbjct: 429 SWDQFKTFEERGDMF 443
>gi|270295451|ref|ZP_06201652.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
D20]
gi|270274698|gb|EFA20559.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
D20]
Length = 444
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 107/392 (27%), Positives = 191/392 (48%), Gaps = 51/392 (13%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + + K++ +TG+NGK+T + + + G+ + GN+GN
Sbjct: 82 LKEKGTPIISEIEFAGRYT--NAKMVCITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGN 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL + + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVATEQHDYYVIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID-----TE 193
M+ Y K + + + + + + + H A + F VK D E
Sbjct: 190 MQKYVDAKFRITQNQTSEDAFIFWNDDPIIKRELDKHGLR-AHLYPFAAVKEDGAIAYVE 248
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTIEIL 252
P + ++ + + G HN +N+ A +S L G+ E + +
Sbjct: 249 DGEVEINEP---IAFNMEQEELALHGTHNLYNSLAAGISANLA---GIRKEYIRKALSDF 302
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
+ HR++ V ++GV++++DSKATN+ + L + G K V++LGG+ K N
Sbjct: 303 KGVEHRLEKVAT-VRGVSFINDSKATNVNSCWYALQSMTG-KTVLILGGKDK------GN 354
Query: 313 GFEKLIEPLNHHRCVITFGYSGVLIWKTLVN-------NGLSIPCFAV-ANMKDAVNHAR 364
+ + IE L +C L++ L N + L +P V M+DAV A
Sbjct: 355 DYTE-IEDLVREKC-------SALVYLGLHNEKLHAFFDRLGLPVADVQTGMQDAVEAAF 406
Query: 365 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
++A G+ ++LSP CASFD F+++E RG F+
Sbjct: 407 KLAKKGETVLLSPCCASFDLFKSYEDRGDQFK 438
>gi|399116607|emb|CCG19414.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Taylorella
asinigenitalis 14/45]
Length = 481
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 120/396 (30%), Positives = 189/396 (47%), Gaps = 48/396 (12%)
Query: 27 RVMSELDFAAQVI-------PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG 79
+++SE+D I IKI+ +TGTNGK+TV + V M + G++A GN+
Sbjct: 102 KIISEIDLFMHAILDHNKVNSTPIKIIGITGTNGKTTVTSMVRLMCEYSGLKAVAAGNI- 160
Query: 80 NPLSEAAFHCIALPSSKPKF-QVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT 138
S +A I+ + K+ V +E+SS Q+ ++ S +LN+T DH++ H
Sbjct: 161 ---SPSALTVISEFEQQNKWPDVIALELSSAQLFYTSE-LKLDASTILNITQDHIDWHGG 216
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHL--NEAIKGHRFNLAWIGAFPGVKIDTEAKT 196
M+ Y +K +F F Q + +E K + N AWI + + E
Sbjct: 217 MQAYKESKLKIFD-----------FSEQKIASDEQAKEYGLNKAWIYTEALPQKENEIGV 265
Query: 197 ASFEVPAVGVVSQLQL---HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
+Q L MK+ G HN NA +AA+ L +G+ +E L + +
Sbjct: 266 NELNGMKWFCTTQKNLMPVDAMKIRGHHNVLNA-MAAIQ-LCQSVGLPLEPLLAALRDYE 323
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
PHR V RDI GV ++DDSK TN+ AT + + V++LGG+ K GQ+
Sbjct: 324 AQPHRCTYV-RDINGVIFIDDSKGTNVGATVAAINGMY-RNLVVILGGEGK---GQD--- 375
Query: 314 FEKLIEPLNHH-----RCVITFGYSGVLIWKTL-VNNGL---SIPCFAVANMKDAVNHAR 364
F L E L R ++ G L+ + V +GL S+P V +++ AV+ A
Sbjct: 376 FTPLYESLQKRVPDGLRGLVLLGKDKDLLKSSFHVKDGLFANSVPVKEVQSIEQAVHDAY 435
Query: 365 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAF 400
+A GD ++LSP CAS D F+N+ RG+ F + +
Sbjct: 436 ALAKAGDLVLLSPACASTDMFKNYHERGVKFADAVY 471
>gi|422911230|ref|ZP_16945856.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE-09]
gi|341632036|gb|EGS56910.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE-09]
Length = 440
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 122/428 (28%), Positives = 189/428 (44%), Gaps = 82/428 (19%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELD-FAAQVIPRSIKILAVTGTN 52
W L WL + + G+A +L +G V+ +++ FA V ++A+TG+N
Sbjct: 61 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV---DTPVIAITGSN 117
Query: 53 GKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME 112
GKSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 118 GKSTVTDLSGVLANAAGVKASVGGNIGVP---------ALDLISPDVELYVLELSSFQLE 168
Query: 113 IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAI 172
+ + LNL+ DH++R++ M++Y K +F H +
Sbjct: 169 TTSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVV-------------- 213
Query: 173 KGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHN--------------MKVM 218
N FP + T E A V+Q Q H + ++
Sbjct: 214 -----NADDTQTFPDHAAHLQVVTFGVEQAAQFTVAQHQGHEYLFARDEAVMACAELSLV 268
Query: 219 GRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
GRHN N +A L G++ + ++AL S + HR Q+V D G+ WV+DSK
Sbjct: 269 GRHNVANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSK 323
Query: 277 ATNLEATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGV 335
ATN+ +T L LK + +L+GG K G + ++ L C FG G
Sbjct: 324 ATNVASTLAALSGLKIAGQLYLLVGGVGK---GADFTPLAPVLATLPVQLCC--FGVDGH 378
Query: 336 LIWKTLVNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNFEHR 391
+P A D+ + R +GD ++LSP CASFD+F+NF R
Sbjct: 379 QF----------MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMAR 428
Query: 392 GMVFQELA 399
G +F +LA
Sbjct: 429 GDIFAQLA 436
>gi|254436097|ref|ZP_05049604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosococcus
oceani AFC27]
gi|207089208|gb|EDZ66480.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosococcus
oceani AFC27]
Length = 463
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 103/355 (29%), Positives = 166/355 (46%), Gaps = 26/355 (7%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++ +TG+NGKSTV + + M G + GGNLG P E KP + ++
Sbjct: 125 VIGITGSNGKSTVTSLLEAMARQAGRQVLAGGNLGTPALELL--------EKPVPDLYIL 176
Query: 105 EVSSYQMEIPNKYFCPTVSV-VLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E Y V+ VLN++PDH++R+ + Y K ++ T ++
Sbjct: 177 ELSSFQLE--TTYTLDAVAACVLNISPDHMDRYPDLDAYCQAKARIYR---GTGTMVINA 231
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
+ + ++ HR L + P V + A G L + + GRHN
Sbjct: 232 DDFRVASLVQPHRPCLRFTLGMPAVDEYGLQERAGETWLVRGHERLLSARRLPLAGRHNL 291
Query: 224 HNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEAT 283
NA A G +G+ A+ S ++ PHR + + ++ GV W +DSK TN+ AT
Sbjct: 292 ANALAALAL--GEAVGLPRAAMLSALQAFSGLPHRCEWLA-EVNGVRWYNDSKGTNVGAT 348
Query: 284 CTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL-NHHRCVITFGYSGVLIWKTLV 342
+ + +IL+ G V G + F L +PL R V+ G + L
Sbjct: 349 VAAIEGIPCQGKLILIAG--GVGKGAD---FSPLSKPLIQRARAVVLMGQDASRLEAVLA 403
Query: 343 NNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
+ P + V +M +AV A +A +GD ++LSP CASFD + +FE RG F++
Sbjct: 404 SG---PPLYRVNSMDEAVVKANVLAQSGDCVLLSPACASFDMYADFEARGQAFRQ 455
>gi|417821720|ref|ZP_12468334.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE39]
gi|340039351|gb|EGR00326.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE39]
Length = 406
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 113/371 (30%), Positives = 172/371 (46%), Gaps = 60/371 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G + N G++A VGGN+G P AL P ++ V+
Sbjct: 76 VIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVL 126
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLG 159
E+SS+Q+E + + LNL+ DH++R++ M++Y K +F H +VN
Sbjct: 127 ELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAEAAVVNADDTQ 185
Query: 160 LLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM 215
P HL G +F+LA + EA A E +
Sbjct: 186 TFPDHAAHLQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------L 231
Query: 216 KVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
++GRHN N +A L G++ + ++AL S + HR Q+V D G+ WV+
Sbjct: 232 SLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVN 286
Query: 274 DSKATNLEATCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGY 332
DSKATN+ +T L LK + +L+GG K G + ++ L C FG
Sbjct: 287 DSKATNVASTLAALSGLKIEGQLYLLVGGVGK---GADFTSLAPVLATLPVQLCC--FGV 341
Query: 333 SGVLIWKTLVNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNF 388
G +P A D+ + R +GD ++LSP CASFD+F+NF
Sbjct: 342 DGHQF----------MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNF 391
Query: 389 EHRGMVFQELA 399
RG +F +LA
Sbjct: 392 MARGDIFAQLA 402
>gi|88801288|ref|ZP_01116816.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Polaribacter irgensii 23-P]
gi|88781946|gb|EAR13123.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Polaribacter irgensii 23-P]
Length = 460
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 110/402 (27%), Positives = 193/402 (48%), Gaps = 55/402 (13%)
Query: 9 LEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHL 68
L +LKA G++ V+SE++FAA+ S I+ +TG+NGK+T V ++L
Sbjct: 94 LVLKLKANGIS--------VISEIEFAAKYT--SATIVGITGSNGKTTTTMLVHRILKDA 143
Query: 69 GIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNL 128
G+ + GN+G ++ ++ + VVE+SS+Q++ K F ++++ N+
Sbjct: 144 GLNVGLAGNIGVSFAQQV--------AEVSHENYVVELSSFQLDGIEK-FSSHIAILTNI 194
Query: 129 TPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFN--------- 178
TPDHL+R++ + Y +K + + + + + +N +K H+
Sbjct: 195 TPDHLDRYEYDFEKYVASKFRITQNQKESDYLIYDADDIAINTWLKQHKIKAKLVPFSLK 254
Query: 179 --LAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL 236
LA+ G I + ++P + + V G+HN N A ++ L
Sbjct: 255 KELAYGAFLKGNNIIININKETIKMP---------ISTITVKGKHNVKNTMAATMAAQLL 305
Query: 237 DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL--MDLKGHK 294
I EA+ ++ HR++ V + ++GV +++DSKATN+ AT L MD +
Sbjct: 306 QI--RKEAIKESLANFEGVEHRLENVAK-VKGVEYINDSKATNVNATFYALECMD---RQ 359
Query: 295 CVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVA 354
V ++GG V G + N L+ + ++ G I K + N + I A
Sbjct: 360 TVWIVGG---VDKGNDYNDLLPLVRE--KVKAIVCLGVDNQKI-KDMFGNVVDI-VVETA 412
Query: 355 NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
++AV A ++A +GDA++LSP CASFD F N+E RG F+
Sbjct: 413 GAEEAVKVAHKLAEDGDAVLLSPACASFDLFENYEDRGRQFK 454
>gi|253988592|ref|YP_003039948.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photorhabdus
asymbiotica]
gi|253780042|emb|CAQ83203.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photorhabdus
asymbiotica]
Length = 423
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 117/374 (31%), Positives = 176/374 (47%), Gaps = 61/374 (16%)
Query: 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQV 101
+ I+A+TG+NGKSTV + VG+M G + VGGN+G P AL K Q+
Sbjct: 91 TTPIIAITGSNGKSTVTSLVGEMAKAAGWQVGVGGNIGLP---------ALELLKQSCQL 141
Query: 102 AVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSH----MVNT 156
V+E+SS+Q+E + VLN+T DH++R+ + + Y K ++ +VN
Sbjct: 142 YVLELSSFQLET-TYSLKAAAATVLNVTEDHMDRYPQGLSQYRAAKLRVYHQAKRCIVNV 200
Query: 157 KLGL-LP---FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
+ L LP ++ ++ + + L AF +K+ ++ A+ E+
Sbjct: 201 QDTLTLPETGMDSRCVSVGVDCGDYQLDSENAF--LKVHNQSLLAANEI----------- 247
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
K+ GRHNY N VA L +G+ EA +T+ + HR Q+VH + GV W+
Sbjct: 248 ---KLTGRHNYVNGLVAL--ALADAVGIPREASLATLTVYPGLNHRFQLVHLN-NGVRWI 301
Query: 273 DDSKATNLEATCTGL--MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRC---- 326
+DSKATN+ +T L ++L+G +LLGG K + PL C
Sbjct: 302 NDSKATNVGSTEAALNGLNLEG-TLYLLLGGDGKSAD----------FSPLKPFLCGDKV 350
Query: 327 -VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEF 385
+ FG G K L I M+ A+ GD ++LSP CAS D+F
Sbjct: 351 RLYCFGRDG----KRLAQLRPEIATL-TETMEQAIRDIAPRLVAGDMVLLSPACASLDQF 405
Query: 386 RNFEHRGMVFQELA 399
RNFE RG F LA
Sbjct: 406 RNFEQRGHEFARLA 419
>gi|350270589|ref|YP_004881897.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oscillibacter
valericigenes Sjm18-20]
gi|348595431|dbj|BAK99391.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oscillibacter
valericigenes Sjm18-20]
Length = 474
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 115/395 (29%), Positives = 190/395 (48%), Gaps = 45/395 (11%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L ++ G + SE++ +V+P ++AVTG++GK+T T + + L G VGGN
Sbjct: 106 LLAAVERGSVITSEMEVFFEVVP--CTLIAVTGSDGKTTTTTLIAEFLKAAGKNVHVGGN 163
Query: 78 LGNPL-SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH 136
+G+PL EA +P+ AV+E+SS+Q+ P +SV+ NL P+HL+ H
Sbjct: 164 IGHPLLCEAG-------EMQPE-DYAVLELSSFQLM--TMKCSPHISVITNLAPNHLDIH 213
Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIK---GH-----RFNLAWIGAF-PG 187
+ M Y K ++F+H + + + N E GH R + G F G
Sbjct: 214 RDMAEYVAAKENIFTHQSSEDIAVFNADNAITAEQASRALGHVRLFSRKSQPEEGVFLRG 273
Query: 188 VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNS 247
+ + A E+ L+ ++ + G HN N A +V GL V A+
Sbjct: 274 DAVISRKNGAEREI--------LRTSDILLPGVHNVENYMAAIAAVDGL---VPDGAMRQ 322
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLN 307
HR+++V R ++GV + +DS T+ T GL K +++ GG K +
Sbjct: 323 VARTFAGVEHRIELV-RTLRGVRYFNDSIGTSPSRTIAGLRSFP-EKVILIAGGYDKHIP 380
Query: 308 GQESNGFEKL-IEPLNHHRCVITFGYSGVLIWKTLVN--NGLSIP-CFAVANMKDAVNHA 363
F+ L E ++H + +I G + I + +VN N P + + K AV A
Sbjct: 381 ------FDVLGPEIVDHVKLLILCGATADKIRECVVNAPNYQGGPEMVTIPDFKTAVETA 434
Query: 364 RRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
+ A +GD ++LSP CA+FD+F+NF RG VF+++
Sbjct: 435 SQRAGDGDVVLLSPACAAFDQFKNFMERGKVFKQI 469
>gi|417850107|ref|ZP_12496022.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
mitis SK1080]
gi|339455440|gb|EGP68047.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
mitis SK1080]
Length = 450
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 109/378 (28%), Positives = 184/378 (48%), Gaps = 33/378 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LTKGIPVLTEVELAYLI--SEAPIVGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A S K V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTA----SDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTA 197
Y K ++ + M +L F NQ L + + A + F + K+D E
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKELATK--TQATVVPFSTLEKVDGAYLEDGHL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F V S++ V G HN N A+A ++V L GVD + + T+ H
Sbjct: 260 YFRGEVVMAASEI-----GVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R+Q V +IQGV + +DSK+TN+ AT L K +++ GG + N F++L
Sbjct: 313 RLQFVD-EIQGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDEL 365
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
+ + + ++ G S + + G++ ++ DA A +AT G+ ++LSP
Sbjct: 366 VPDITGLKKMVILGQSAERVKRAADKAGVA--YVDATDIADATRKAYELATQGNVVLLSP 423
Query: 378 GCASFDEFRNFEHRGMVF 395
AS+D + NFE RG +F
Sbjct: 424 ANASWDMYANFEVRGDLF 441
>gi|77166314|ref|YP_344839.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nitrosococcus
oceani ATCC 19707]
gi|122063251|sp|Q3J787.1|MURD_NITOC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|76884628|gb|ABA59309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosococcus
oceani ATCC 19707]
Length = 453
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 103/355 (29%), Positives = 166/355 (46%), Gaps = 26/355 (7%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++ +TG+NGKSTV + + M G + GGNLG P E KP + ++
Sbjct: 115 VIGITGSNGKSTVTSLLEAMARQAGRQVLAGGNLGTPALELL--------EKPVPDLYIL 166
Query: 105 EVSSYQMEIPNKYFCPTVSV-VLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E Y V+ VLN++PDH++R+ + Y K ++ T ++
Sbjct: 167 ELSSFQLE--TTYTLDAVAACVLNISPDHMDRYPDLDAYCQAKARIYR---GTGTMVINA 221
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
+ + ++ HR L + P V + A G L + + GRHN
Sbjct: 222 DDFRVASLVQPHRPCLRFTLGMPAVDEYGLQERAGETWLVRGHERLLSARRLPLAGRHNL 281
Query: 224 HNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEAT 283
NA A G +G+ A+ S ++ PHR + + ++ GV W +DSK TN+ AT
Sbjct: 282 ANALAALAL--GEAVGLPRAAMLSALQAFSGLPHRCEWLA-EVNGVRWYNDSKGTNVGAT 338
Query: 284 CTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL-NHHRCVITFGYSGVLIWKTLV 342
+ + +IL+ G V G + F L +PL R V+ G + L
Sbjct: 339 VAAIEGIPCQGKLILIAG--GVGKGAD---FSPLSKPLIQRARAVVLMGQDASRLEAVLA 393
Query: 343 NNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
+ P + V +M +AV A +A +GD ++LSP CASFD + +FE RG F++
Sbjct: 394 SG---PPLYRVNSMDEAVVKANVLAQSGDCVLLSPACASFDMYADFEARGQAFRQ 445
>gi|262383988|ref|ZP_06077124.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
2_1_33B]
gi|262294886|gb|EEY82818.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
2_1_33B]
Length = 445
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 113/391 (28%), Positives = 190/391 (48%), Gaps = 35/391 (8%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G ++SE++FA + K++ +TG+NGK+T +L G++
Sbjct: 76 KAPIIQLLKKQGTPIISEIEFAGRYTDS--KMICITGSNGKTTTTMLTYHILKEAGVDVG 133
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+GN L AL ++ V V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 134 LAGNVGNSL--------ALQVAEDPHAVYVIELSSFQLD--NMYDFRADIAIILNITPDH 183
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQH---LNEAIKGHRFNLAWIGAFP-- 186
L+R+ M+NY K + + TK F N E K H + A
Sbjct: 184 LDRYNYEMQNYVDAKFRILQNQ--TKDDAFIFWNDDPIIAREIAKRHPEATLYPFAETHE 241
Query: 187 -GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
GVK TE E + L + + G HN +N+ + ++ +DI E +
Sbjct: 242 NGVKGYTENNQVVIETANGTFTMEQDL--LALTGTHNLYNSLASGIASKIVDIHD--EKI 297
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKV 305
+++ HR++ V R ++GV +++DSKATN+ + L + V++LGG K
Sbjct: 298 RASLSDFTGVEHRLEKVLR-VRGVDYINDSKATNVNSCWYALQSMTT-PVVLILGGTDK- 354
Query: 306 LNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR 365
G + + E+L+ H +I G + +G +M++AV A +
Sbjct: 355 --GNDYSEIEELVNKKVH--SLIFMGVDNTKLHAFF--DGKVANIEDARSMEEAVAKAYK 408
Query: 366 MATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
MA GD ++LSP CASFD F+++E RG F+
Sbjct: 409 MAHKGDTVLLSPCCASFDLFKSYEDRGDQFK 439
>gi|153809197|ref|ZP_01961865.1| hypothetical protein BACCAC_03508 [Bacteroides caccae ATCC 43185]
gi|423220326|ref|ZP_17206821.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides caccae
CL03T12C61]
gi|149128173|gb|EDM19393.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
caccae ATCC 43185]
gi|392623403|gb|EIY17506.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides caccae
CL03T12C61]
Length = 444
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 109/390 (27%), Positives = 189/390 (48%), Gaps = 45/390 (11%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKAQGTPVISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEDHHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTE-AKTA 197
M+NY K + + + + + + H A + F VK D A
Sbjct: 190 MQNYIDAKFRITQNQTPDDAFIFWNDDPIIRHELAKHGLK-AHLYPFAAVKEDGAIAYVE 248
Query: 198 SFEVPAVGVVS-QLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTIEILRTP 255
EV ++ ++ + + G+HN +N+ A +S L G+ E + + R
Sbjct: 249 DHEVKITEPIAFNMEQEELALTGQHNLYNSLAAGISANLA---GIAKENIRKALSDFRGV 305
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K N +
Sbjct: 306 EHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK------GNDYT 357
Query: 316 KLIEPLNHHRCVITFGYSGVLIWKTLVNNGL-------SIPCFAV-ANMKDAVNHARRMA 367
+ IE L +C L++ L N L +P V MKDAV A ++A
Sbjct: 358 E-IEDLVREKC-------SALVYLGLHNEKLHDFFDRFGLPVADVQTGMKDAVEAAYKLA 409
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
G+ ++LSP CASFD F ++E RG F++
Sbjct: 410 KKGETVLLSPCCASFDLFNSYEDRGDQFKK 439
>gi|423957693|ref|ZP_17735436.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE-40]
gi|423985678|ref|ZP_17738992.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE-46]
gi|408656527|gb|EKL27621.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE-40]
gi|408663521|gb|EKL34390.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE-46]
Length = 440
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 113/371 (30%), Positives = 172/371 (46%), Gaps = 60/371 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G + N G++A VGGN+G P AL P ++ V+
Sbjct: 110 VIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVL 160
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLG 159
E+SS+Q+E + + LNL+ DH++R++ M++Y K +F H +VN
Sbjct: 161 ELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAEAAVVNADDTQ 219
Query: 160 LLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM 215
P HL G +F+LA + EA A E +
Sbjct: 220 TFPDHAAHLQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------L 265
Query: 216 KVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
++GRHN N +A L G++ + ++AL S + HR Q+V D G+ WV+
Sbjct: 266 SLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVN 320
Query: 274 DSKATNLEATCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGY 332
DSKATN+ +T L LK + +L+GG K G + ++ L C FG
Sbjct: 321 DSKATNVASTLAALSGLKIEGQLYLLVGGVGK---GADFTSLAPVLATLPVQLC--CFGV 375
Query: 333 SGVLIWKTLVNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNF 388
G +P A D+ + R +GD ++LSP CASFD+F+NF
Sbjct: 376 DGHQF----------MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNF 425
Query: 389 EHRGMVFQELA 399
RG +F +LA
Sbjct: 426 MARGDIFAQLA 436
>gi|383640288|ref|ZP_09952694.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas
elodea ATCC 31461]
Length = 379
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 113/359 (31%), Positives = 168/359 (46%), Gaps = 51/359 (14%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
+++ +TGTNGKST + ++ GI +GGN+G P I P+ V V
Sbjct: 59 RVVGITGTNGKSTTTALIHHIIETAGIPTRLGGNIGLP--------ILGQEPLPEGGVYV 110
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SSYQ+++ C V+V+LN+TPDHL+R+ + YA +K LF+ ++
Sbjct: 111 LELSSYQIDLTQSLDC-DVAVLLNITPDHLDRYDGFEGYAASKARLFAMQSKGHAAIIGI 169
Query: 164 GNQH-----LNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
G+ A+ G ++ I PGV +D Q +
Sbjct: 170 GDAASATIARRVALSGRAEDVTKIA--PGVCMD-------------------QSRWPALQ 208
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ-IVHRDIQGVTWVDDSKA 277
G HN NA A + L G+D A++ +E PHRM+ I R+ GV +V+DSKA
Sbjct: 209 GPHNAQNALAAIAACEAL--GIDRAAIDRGLESFPGLPHRMERIATRN--GVLFVNDSKA 264
Query: 278 TNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLI 337
TN E+T L + +LGG AK ++ E H T G +G+L
Sbjct: 265 TNPESTAPALAAYP--RIHWILGGVAK------TDSLEACRPGFGHVVRAYTIGEAGLLF 316
Query: 338 WKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
L +P ++ AV A A GDA++LSP CASFD+FR+FE RG F+
Sbjct: 317 AGLLEGE---MPVEQSGTLEAAVRAAAANARPGDAVLLSPACASFDQFRDFEARGDAFR 372
>gi|256841648|ref|ZP_05547154.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides sp.
D13]
gi|256736542|gb|EEU49870.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides sp.
D13]
Length = 445
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 113/391 (28%), Positives = 190/391 (48%), Gaps = 35/391 (8%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G ++SE++FA + K++ +TG+NGK+T +L G++
Sbjct: 76 KAPIIQLLKKQGTPIISEIEFAGRYTDS--KMICITGSNGKTTTTMLTYHILKEAGVDVG 133
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+GN L AL ++ V V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 134 LAGNVGNSL--------ALQVAEDPHAVYVIELSSFQLD--NMYDFRADIAIILNITPDH 183
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQH---LNEAIKGHRFNLAWIGAFP-- 186
L+R+ M+NY K + + TK F N E K H + A
Sbjct: 184 LDRYNYEMQNYVDAKFRILQNQ--TKDDAFIFWNDDPIIAREIAKRHPEATLYPFAETHE 241
Query: 187 -GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
GVK TE E + L + + G HN +N+ + ++ +DI E +
Sbjct: 242 NGVKGYTENNQVVIETANGTFTMEQDL--LALTGTHNLYNSLASGIASKIVDIHD--EKI 297
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKV 305
+++ HR++ V R ++GV +++DSKATN+ + L + V++LGG K
Sbjct: 298 RASLSDFTGVEHRLEKVLR-VRGVDYINDSKATNVNSCWYALQSMTT-PVVLILGGTDK- 354
Query: 306 LNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR 365
G + + E+L+ H +I G + +G +M++AV A +
Sbjct: 355 --GNDYSEIEELVNKKVH--SLIFMGVDNTKLHAFF--DGKVANIEDARSMEEAVAKAYK 408
Query: 366 MATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
MA GD ++LSP CASFD F+++E RG F+
Sbjct: 409 MAHKGDTVLLSPCCASFDLFKSYEDRGDQFK 439
>gi|134095973|ref|YP_001101048.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Herminiimonas
arsenicoxydans]
gi|133739876|emb|CAL62927.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
(UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
(D-glutamic acid-adding enzyme) [Herminiimonas
arsenicoxydans]
Length = 498
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 120/388 (30%), Positives = 177/388 (45%), Gaps = 61/388 (15%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS----EAAFHCIALPSSKPKF 99
K++A+TGTNGK+TV + VG + G+ V GN+ +P + + A ALP
Sbjct: 120 KVIAITGTNGKTTVTSLVGLLCQRAGLTVQVAGNI-SPAALDRLDQAVASDALP------ 172
Query: 100 QVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS-------- 151
QV V+E+SS+Q+ V+ VLNLT DHL+ H M YA K +F
Sbjct: 173 QVWVLELSSFQLHF-TYSLQADVATVLNLTQDHLDWHGDMAAYADDKARIFGSNTIRVLN 231
Query: 152 -------HMVNTKLGLLPFGNQHLNEAIKGHRFNLA------WIG-AFPGVKIDTEAKTA 197
M ++ FG +EA + + F LA W+ A ++ + +
Sbjct: 232 RDDARVMQMALPSAAVITFGA---DEAGQANCFGLADENGMRWLSVAVAEEELPQKRRKK 288
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL--DIGVDVEALNSTIEILRTP 255
A+ + + +K+ G+HN A+ ALS L L IG+ L +
Sbjct: 289 DNVELAISTKKLMPVDALKIRGQHN----AINALSALALCRAIGLSFAQLLHGLREYHGE 344
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGL------MDLKGHKCVILLGGQAKVLNGQ 309
PHR++ V I GV + DDSK TN+ AT L D V++ GG K GQ
Sbjct: 345 PHRVEHVMT-IAGVEYYDDSKGTNVGATVAALNGLGVSQDGGAKHLVLIAGGDGK---GQ 400
Query: 310 ESNGFEKLIEPL-NHHRCVITFGYSGVLIWKTLVNNGLS-IPCFAVANMKDAVNHARRMA 367
+ F L +P+ + R V+ G I + G+ I C +++A A +A
Sbjct: 401 D---FSPLADPVAKYARAVVLIGKDAASIRAAIAATGVELIDC---TTLEEATQKAAELA 454
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVF 395
GDA++LSP CAS D FRN+ HR VF
Sbjct: 455 QAGDAVLLSPACASLDMFRNYAHRAQVF 482
>gi|406942300|gb|EKD74566.1| hypothetical protein ACD_44C00400G0008 [uncultured bacterium]
Length = 441
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 107/365 (29%), Positives = 178/365 (48%), Gaps = 51/365 (13%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+N K TV T VG ML+ + VGGN+G P + L + P+F V+
Sbjct: 104 IIAITGSNAKGTVTTLVGNMLSAANRKGLVGGNIGVPALD------LLTNPPPEFY--VL 155
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E + + VLN++PDHL+RH T++NY +K ++ N K +
Sbjct: 156 ELSSFQLET-TQSLKAHAATVLNISPDHLDRHLTLENYISSKQRIYK---NCKTAIY--- 208
Query: 165 NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLH----------N 214
+ ++A I + K T ++ F+ + +++ L
Sbjct: 209 ----------NGDDMATIPHYSVSKKITFGASSEFDFHLLSEKNEIYLAEHHEKLLPVIE 258
Query: 215 MKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDD 274
+K+ G+HN+ NA A +D+ +A + ++ PHR Q + ++ GV W DD
Sbjct: 259 LKISGKHNWLNALAALALASTMDL--PRQAKLTALQTFSGLPHRCQWLG-NLNGVHWYDD 315
Query: 275 SKATNLEATCT---GLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP-LNHHRCVITF 330
SK TN+ +T GL K +++ GG K + FE L EP L+H + ++
Sbjct: 316 SKGTNIGSTLAAIQGLGTTTSGKIILIAGGVGKGAD------FELLKEPVLSHVKTLLLL 369
Query: 331 GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEH 390
G LI L V ++++A A +++ +GD ++LSP CAS D F+++ H
Sbjct: 370 GQDAPLIADALKG---CCEIIHVRDLEEASRVAFKISKSGDIVLLSPACASLDMFKDYHH 426
Query: 391 RGMVF 395
RG VF
Sbjct: 427 RGEVF 431
>gi|381199860|ref|ZP_09907006.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingobium
yanoikuyae XLDN2-5]
Length = 437
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 114/362 (31%), Positives = 168/362 (46%), Gaps = 52/362 (14%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ--- 100
K++ +TGTNGKST + ++ G A +GGN+G P+ + +P
Sbjct: 110 KVVGITGTNGKSTTTALIHHIIEQAGFPARMGGNIGLPI-------LGQEPLEPNLHGMG 162
Query: 101 VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160
V V+E+SSYQ+++ + C V+V+LN+TPDHL+R+ Y +K LF+ + +
Sbjct: 163 VYVLELSSYQIDLTHSLDC-DVAVLLNITPDHLDRYNGFAGYVASKARLFAMQSAEHVAV 221
Query: 161 LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGR 220
+ ++ P I A EV A + + QL + G
Sbjct: 222 IATEDE-------------------PSRGIAASAPAQLREVKAADIDPEAQLGWPSLQGP 262
Query: 221 HNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
HN NAAVA +G +G+D + + + + PHRMQ V GV +V+DSKATN
Sbjct: 263 HNAQNAAVAI--AVGRALGIDDATIMAALASYASLPHRMQAVGTH-NGVLYVNDSKATNA 319
Query: 281 EATCT--GLMDLKGHKCVI--LLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVL 336
+T G + K I +LGG AK N E + I T G +G +
Sbjct: 320 ASTAPALGAWPARDGKPRIHWILGGVAKSDNLDECAPYYGNIA------HAYTIGEAGHM 373
Query: 337 IWKTLVNNGLSIPCFAVAN---MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
L P AV + + AV A R+A GD ++LSP CASFD+FR+FE RG
Sbjct: 374 FADLLR------PHMAVDDSEMLSAAVRRAARIAQPGDVVLLSPACASFDQFRDFEARGD 427
Query: 394 VF 395
F
Sbjct: 428 AF 429
>gi|307708861|ref|ZP_07645321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
mitis SK564]
gi|307620197|gb|EFN99313.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
mitis SK564]
Length = 450
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 105/374 (28%), Positives = 182/374 (48%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LSKGIPVLTEVELAYLI--SEAPIVGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A S K V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTA----SDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F + A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKELASK--TQATVVPFSTQEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V +I+GV + +DSK+TN+ AT L K +++ GG + N F++L+ +
Sbjct: 317 VD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + + + ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAA--DKADVSYVDATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|441503427|ref|ZP_20985433.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photobacterium sp.
AK15]
gi|441428925|gb|ELR66381.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photobacterium sp.
AK15]
Length = 445
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 124/415 (29%), Positives = 197/415 (47%), Gaps = 61/415 (14%)
Query: 3 MLWLFLLEFQLKATGLAC----LLQS---GKRVMSELDFAAQVIPRSIKILAVTGTNGKS 55
M WL + + + G+A L+Q+ G ++ +++ A+ + + ++A+TG+NGKS
Sbjct: 63 MDWLLAADMIVASPGIALATPELVQAAEAGIEIVGDIELFARAVTK--PVVAITGSNGKS 120
Query: 56 TVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPN 115
TV + VG+M GI VGGN+G AL + V+E+SS+Q+E +
Sbjct: 121 TVTSLVGEMAKEAGINVGVGGNIG---------FAALDMLAQDHDLYVLELSSFQLETTS 171
Query: 116 KYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH 175
+V LNL+ DH++R+ +++Y+ K +F H +L + +
Sbjct: 172 SLKLKA-AVYLNLSEDHMDRYNGLEDYSQAKMRIFCH---AELAVF-------------N 214
Query: 176 RFNLA-----WIGAFPGVKIDTEA----KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNA 226
R +LA + GA D+EA E AV + + ++GRHN N+
Sbjct: 215 RDDLATRPVDFYGAMTSFGFDSEAYGLITVNDEEYLAVDQQPVMATSQIALVGRHNVANS 274
Query: 227 AVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTG 286
A IG D A ++ HR Q+V + Q V WV+DSKATNL +T
Sbjct: 275 LAALALADAAGIGHD--AACRALQRYNGLAHRCQLV-ANYQDVRWVNDSKATNLASTLAA 331
Query: 287 L--MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNN 344
L ++L G K +L+GG K G + + + ++ LN + +G G + +LV
Sbjct: 332 LKGLNLSG-KLHLLVGGDGK---GADFSELKLVLANLNVQ--LYCYGRDG-HHFASLVEA 384
Query: 345 GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
LS V M+ A+ A A GD ++LSP CASFD++ NF RG F LA
Sbjct: 385 PLS-----VETMEQAMQIAADTAQAGDMVLLSPACASFDQYPNFMARGDAFVALA 434
>gi|423722747|ref|ZP_17696900.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides
merdae CL09T00C40]
gi|409242020|gb|EKN34785.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides
merdae CL09T00C40]
Length = 453
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 114/397 (28%), Positives = 194/397 (48%), Gaps = 47/397 (11%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G ++SE++FA + K++ +TG+NGK+T +L G++A
Sbjct: 84 KAPIIKKLKEKGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTMLTYHILRQAGVDAG 141
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+GN L AL ++ V V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 142 LAGNVGNSL--------ALQVAEDPHAVYVIELSSFQLD--NMYDFKADIAILLNITPDH 191
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP----- 186
L+R+ M+NY K + + + + + I R A + F
Sbjct: 192 LDRYNYEMQNYVDAKFRIIRNQTAEDAFIFWNDDPIIAREI-AKRHPQATLYPFAETHEA 250
Query: 187 GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
GVK TE K E + L + + G HN +N+ + ++ DI E L
Sbjct: 251 GVKGYTEDKKIIIETSNGTFTMEEDL--LALSGTHNLYNSLASGIASKLEDIHD--ENLR 306
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVL 306
+++ HR++ V R ++GV +++DSKATN+ + L + V++LGG K
Sbjct: 307 ASLSDFTGVEHRLEKVAR-VRGVDYINDSKATNVNSCWYALQSMTT-PLVLILGGTDK-- 362
Query: 307 NGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGL------SIPCFAVA-NMKDA 359
G + + E+L++ H LI+ + N L +P A +M++A
Sbjct: 363 -GNDYSEIEELVKKKVH-----------ALIFLGVDNAKLHGFFDGKVPVIEDARSMEEA 410
Query: 360 VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
V A ++A GD ++LSP CASFD F+++E RG F+
Sbjct: 411 VAKAYKLAEKGDTVLLSPCCASFDLFKSYEDRGDQFK 447
>gi|331266779|ref|YP_004326409.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
oralis Uo5]
gi|326683451|emb|CBZ01069.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase; D-glutamic acid
adding enzyme, MurD [Streptococcus oralis Uo5]
Length = 450
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 104/374 (27%), Positives = 182/374 (48%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SDAPIIGITGSNGKTTTTTMIGEVLTAAGQRGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAQDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTADDFLVLNF-NQDLAKELATK--TQATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + V G HN N A+A ++V L GVD + + + HR+Q
Sbjct: 260 YFRGEVV-MAADEIGVPGSHNVEN-ALATIAVAKLR-GVDNQIIKEILSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V +I+GV + +DSK+TN+ AT L K +++ GG + N F++L+ +
Sbjct: 317 VD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAAEKAGVT--YVDATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|402823983|ref|ZP_10873378.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
LH128]
gi|402262523|gb|EJU12491.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
LH128]
Length = 450
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 114/365 (31%), Positives = 168/365 (46%), Gaps = 53/365 (14%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
+++ +TGTNGKST + V +L G+ A GGN+G P + P P+ V V
Sbjct: 115 RVVGITGTNGKSTTTSLVCHLLEVAGVPARAGGNIGVP--------VLGPEPLPEGGVYV 166
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SSYQ++I C V+ +LN+TPDHL+R+ + YA +K LFS + +
Sbjct: 167 LELSSYQIDITRSLDC-DVAALLNITPDHLDRYDGFEAYAASKGRLFSMQGRERQAVFGV 225
Query: 164 GNQHLNEAIKGHRFNLAWIGA---FPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMG 219
G++ ++A I A PG V+ A + ++Q + G
Sbjct: 226 GDKETR--------SIAHIEAARRAPGLVRFADGAD-----------LVEIQKEWPSLQG 266
Query: 220 RHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATN 279
HN NAAVA V L GV + PHRM+ V GVT+++DSKATN
Sbjct: 267 PHNLQNAAVAVAIVEAL--GVKKAQWRKGLRTFSGLPHRMERVAV-ANGVTYINDSKATN 323
Query: 280 LEATCTGLMDLKGH---KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVL 336
+T + + +LGG K N E F + T G +G L
Sbjct: 324 PASTAPAIAAFPPDPEPRIHWILGGLPKGDNLDECKPF------FGNIAAAYTIGDAGPL 377
Query: 337 IWKTLVNNGLSIPCFAVAN---MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
+ L P V M +A+ A A GD ++LSP CASFD+FR++E RG
Sbjct: 378 FAEILS------PYTQVHRSEMMAEAIRQAMAAAKPGDVVMLSPACASFDQFRDYEARGD 431
Query: 394 VFQEL 398
VF+++
Sbjct: 432 VFRQI 436
>gi|262404717|ref|ZP_06081272.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC586]
gi|262349749|gb|EEY98887.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC586]
Length = 440
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 122/428 (28%), Positives = 197/428 (46%), Gaps = 82/428 (19%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L G V+ +++ A + + ++A+TG+NG
Sbjct: 61 WNLEWLLSADLVVTNPGIALATAEIQQVLAVGIPVVGDIELFAWHVDK--PVIAITGSNG 118
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 119 KSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLET 169
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTK-----------L 158
+ + LNL+ DH++R++ M++Y K +F H +VN L
Sbjct: 170 TSSLKLKA-AAFLNLSEDHMDRYQGMEDYRQAKLRIFGHAETAVVNADDTQTFPDRAAHL 228
Query: 159 GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
++ FG +H +F++A + EA A E + ++
Sbjct: 229 QVVTFGVEH------AAQFSVAQHQGREYLFAHDEAVMACDE--------------LSLV 268
Query: 219 GRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
GRHN N +A L G++ + ++AL S + HR Q+V D G+ WV+DSK
Sbjct: 269 GRHNVANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-VDNHGIKWVNDSK 323
Query: 277 ATNLEATCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGV 335
ATN+ +T L LK + +L+GG K G + ++ L C FG
Sbjct: 324 ATNVASTLAALSGLKIEGQLYLLVGGVGK---GADFTPLAPVLATLPVQLC--CFG---- 374
Query: 336 LIWKTLVNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNFEHR 391
V+ +P + A D+ + R +GD ++LSP CASFD+F+NF R
Sbjct: 375 ------VDGDKFMPLHSSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMAR 428
Query: 392 GMVFQELA 399
G +F +LA
Sbjct: 429 GDIFAQLA 436
>gi|378578138|ref|ZP_09826818.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Pantoea
stewartii subsp. stewartii DC283]
gi|377819247|gb|EHU02327.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Pantoea
stewartii subsp. stewartii DC283]
Length = 438
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 118/381 (30%), Positives = 174/381 (45%), Gaps = 79/381 (20%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + VGGN+G P AL K Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGLP---------ALSLLKAPAQLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E + +LN+T DH++R+ M+ Y K ++ + +VN G
Sbjct: 158 ELSSFQLET-TYSLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENAQVCVVNADDG 216
Query: 160 L---------------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+ + G+ HLN+ + W+ A G K+
Sbjct: 217 MTMPVRGADARCVSFGIDIGDYHLNK-----QQGSVWLRA-KGEKV-------------- 256
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSV--LGLDIGVDVEALNSTIEILRTPPHRMQIV 262
L M ++G+HNY NA A +GL + AL + + HR Q+V
Sbjct: 257 -----LNTDEMTLVGQHNYTNALAALALADAVGLPRSTSLSALAAYSGL----AHRFQLV 307
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKVLNGQESNGFEKLIEPL 321
H +GV W++DSKATN+ +T L L+ + +LLGG K S F L L
Sbjct: 308 HES-RGVRWINDSKATNVGSTEAALKGLQVDGTLWLLLGGDGK------SADFSPLQPYL 360
Query: 322 NHHRC-VITFGYSGVLIWKTLVNNGLSIPCFAV--ANMKDAVNHARRMATNGDAIVLSPG 378
R + FG G + P AV +++A+ + GD ++LSP
Sbjct: 361 QGDRIRLFCFGRDGDALAALR-------PDVAVRTETLQEAMAQIAKQVQPGDMVLLSPA 413
Query: 379 CASFDEFRNFEHRGMVFQELA 399
CAS D+FRNFE RG VF +LA
Sbjct: 414 CASLDQFRNFEQRGDVFAQLA 434
>gi|336123370|ref|YP_004565418.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio anguillarum
775]
gi|335341093|gb|AEH32376.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio anguillarum
775]
Length = 444
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 113/368 (30%), Positives = 175/368 (47%), Gaps = 55/368 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG NGKSTV G + G++ VGGN+G P AL + + + V+
Sbjct: 115 VIAITGANGKSTVTDLTGVLAKAAGVKVAVGGNIGVP---------ALDLLQQEADLYVL 165
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E + + + LNLT DH++R+ M++Y K +F + +VN
Sbjct: 166 ELSSFQLETTSSLKLVSAAF-LNLTEDHMDRYDGMESYRQAKLRIFKYAQAAVVNAD--- 221
Query: 161 LPFGNQHLNEAIKGH--RFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+Q + GH RF++ + ID ++ + P L + ++
Sbjct: 222 ---DSQTEPPSFSGHIARFSVEHDADYCTQMIDGKSFLVAKGTPL------LASEELSLV 272
Query: 219 GRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
GRHN N +A L + G+D ++AL S R HR Q+V D GV WV+DSK
Sbjct: 273 GRHNSANVLTVLALLDLAGVDYSSALDALKS----YRGLTHRCQVV-ADNHGVKWVNDSK 327
Query: 277 ATNLEATCTGLMDLKGHKCVILL-GGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGV 335
ATN+ +T L L + LL GG K G + + +++ LN C FG
Sbjct: 328 ATNVASTQAALSGLNCQGTLYLLVGGVGK---GADFSPLAPILKTLNVKLCC--FG---- 378
Query: 336 LIWKTLVNNGLSIPCFAVA----NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 391
V+ G +P A +M++ + + GD ++LSP CASFD+F+NF R
Sbjct: 379 ------VDGGQFMPLHPSAQFYSSMEEIIVSIKPQLRRGDMVMLSPVCASFDQFKNFMAR 432
Query: 392 GMVFQELA 399
G F ELA
Sbjct: 433 GDAFAELA 440
>gi|344996592|ref|YP_004798935.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Caldicellulosiruptor lactoaceticus 6A]
gi|343964811|gb|AEM73958.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Caldicellulosiruptor lactoaceticus 6A]
Length = 458
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 115/380 (30%), Positives = 187/380 (49%), Gaps = 27/380 (7%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V+ E++ A + +S I+A+TGTNGK+T T VG++L + V GN+G P
Sbjct: 91 KKGIEVIGEIELAYRFC-KSKNIVAITGTNGKTTTTTLVGEILKKQYEDVVVCGNIGLPF 149
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
I + K + V+E+SS+Q+E KYF P V +LN+TPDHL RH TM+NY
Sbjct: 150 -------IDTIETSSKNTIFVLEISSFQLETI-KYFKPKVGCILNITPDHLNRHMTMENY 201
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPG-----VKIDTEAKTA 197
K +F ++ +L + N + I + N+ V ++ +
Sbjct: 202 IKAKMRIFENIDEMGYTVLNYDNNITRDLIGLAKGNVIVFSKNKSQFENMVFVEKDTIYF 261
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+FE V+ + ++ + G HN NA +AA+S L G++ + + ++ R H
Sbjct: 262 TFEGKTQEVMKKDEIF---IPGEHNLENA-LAAISCT-LPFGIEKDTIEQVLKTFRGVEH 316
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R++ V +I G+ + +DSK TN +A L + +++ GG K G+ F L
Sbjct: 317 RIEFVA-EINGIKFYNDSKGTNTDAAEKALRAFES-PIILIAGGYDK---GESFEKFASL 371
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
+ + V G + I L G V+ +K+AV + A NGD ++LSP
Sbjct: 372 V--AKKVKKVFLLGQTKHKIASELEKIGYK-NFELVSTLKEAVRKSFECAQNGDIVLLSP 428
Query: 378 GCASFDEFRNFEHRGMVFQE 397
CAS+D F N+E RG +F+E
Sbjct: 429 ACASWDMFENYEQRGRMFKE 448
>gi|304392258|ref|ZP_07374200.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ahrensia sp.
R2A130]
gi|303296487|gb|EFL90845.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ahrensia sp.
R2A130]
Length = 463
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 119/373 (31%), Positives = 172/373 (46%), Gaps = 50/373 (13%)
Query: 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG------NPLSEAAFHCIALPS 94
R ++A+TGTNGKST + +L G + +GGN+G +PLSE
Sbjct: 112 RPAPVIAITGTNGKSTTTALIAHVLKQAGRDVQMGGNIGRAVLDLDPLSE---------- 161
Query: 95 SKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV 154
P QV VVE+SSYQ+++ P V ++LNLTPDHLERH T++NYA K L +
Sbjct: 162 -TPANQVYVVEISSYQIDL-APSIAPHVGLLLNLTPDHLERHGTLENYAGIKERL---VA 216
Query: 155 NTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHN 214
+ L ++ ++H AI G R + + P V I + F +V + +
Sbjct: 217 ASDLAVVGLDDEHC-RAISG-RISASRT---PLVTISKDGAADVFFADGKLIVDGDMVID 271
Query: 215 M----KVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVT 270
+ + G+HN NAA A + +G+ E + S HRM+ + V
Sbjct: 272 LSGVGSLRGQHNGQNAAAAFAAC--RAVGLSSEEIQSGFNSFPGLAHRMEQAGH-VGDVL 328
Query: 271 WVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITF 330
+V+DSKATN EA L K + GG AK G L +
Sbjct: 329 FVNDSKATNAEAVAPALSSFP--KVHWIAGGLAK------DGGIGSLAPQFDRIAKAYFI 380
Query: 331 GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMAT-----NGDAIV-LSPGCASFDE 384
G + L + +IP ++K AVNHA R A+ +A+V LSP ASFD+
Sbjct: 381 GEAAGSFASQLPD---TIPYEIAGSLKQAVNHAARDASLAAGKGAEAVVLLSPAAASFDQ 437
Query: 385 FRNFEHRGMVFQE 397
F NFE RG F++
Sbjct: 438 FPNFEKRGEAFKD 450
>gi|29348859|ref|NP_812362.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
thetaiotaomicron VPI-5482]
gi|29340765|gb|AAO78556.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
thetaiotaomicron VPI-5482]
Length = 413
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 110/395 (27%), Positives = 191/395 (48%), Gaps = 55/395 (13%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+SE++FA + K++ +TG+NGK+T + + + + + GN+G
Sbjct: 51 LKAQGTPVISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSADLNVGLAGNIGK 108
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 109 SL--------ALQVAEEHHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 158
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHL-NEAIKGHRFNLAWI---GAFPGVKI 190
M+NY K + + + P Q L +K H + A + GA V+
Sbjct: 159 MQNYIDAKFRITQNQTTDDAFIFWNDDPIIKQELAKHGLKAHLYPFAAVKEDGAIAYVE- 217
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
D E K + ++ + + G+HN +N+ A +S L G+ E + +
Sbjct: 218 DHEVKITE------PIAFNMEQEELALTGQHNLYNSLAAGISA-NL-AGITKENIRKALS 269
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
+ HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K
Sbjct: 270 DFKGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK------ 321
Query: 311 SNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGL-------SIPCFAV-ANMKDAVNH 362
N + + IE L +C L++ L N L +P V MKDAV
Sbjct: 322 GNDYTE-IEDLVREKC-------SALVYLGLHNEKLHAFFDRFGLPVADVQTGMKDAVEA 373
Query: 363 ARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
A ++A G+ ++LSP CASFD F+++E RG F++
Sbjct: 374 AYKLAKKGETVLLSPCCASFDLFKSYEDRGDQFKK 408
>gi|374595525|ref|ZP_09668529.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gillisia limnaea
DSM 15749]
gi|373870164|gb|EHQ02162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gillisia limnaea
DSM 15749]
Length = 447
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 103/392 (26%), Positives = 198/392 (50%), Gaps = 37/392 (9%)
Query: 15 ATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74
AT + L+ G V+SE++FA++ KI+A+TG+NGK+T ++ +L + I A +
Sbjct: 79 ATIVKKLVSQGIPVVSEIEFASKYT--DAKIIAITGSNGKTTTTKWIHHILKNARISAGI 136
Query: 75 GGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHL 133
GN+G+ ++ ++ KF V+E+SS+Q++ I + F P ++V+ N+TPDHL
Sbjct: 137 AGNVGDSFAKQV--------AEEKFDWYVLELSSFQLDGIVD--FKPHIAVLTNITPDHL 186
Query: 134 ERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT 192
+R+ + Y +K + + + + + E + H + K++
Sbjct: 187 DRYNYNLDEYVASKFRITKNQTEEDFFIYDADDNIITEWLNTHSVRAQKLPFSLQKKLEK 246
Query: 193 EAKTASFEVPAVGVVSQLQL--HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
A + + +Q + ++ + G+HN NA +AA +V L + + E + +++E
Sbjct: 247 GAYLEDNNIKINTLNTQFIMPTSSIALEGKHNTKNA-MAASTVANL-LKIRKETIRASME 304
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
+ HR++ V + I V +++DSKATN+ AT L ++ + + ++GG K
Sbjct: 305 GFQAVEHRLEKVLK-INNVLYINDSKATNINATYYALDSMES-ETIWIVGGVDK------ 356
Query: 311 SNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAV----ANMKDAVNHARR 365
N + +L+ +N + +I G I++ N C + M++A+ A +
Sbjct: 357 GNNYSELLPLVNEKVKAIICLGVDNSRIFEAFGN------CVDIMVETQFMEEAIKIAYK 410
Query: 366 MATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
+ G+ ++LSP CASFD F N+E RG F++
Sbjct: 411 LGEKGNVVLLSPACASFDLFENYEDRGRQFKD 442
>gi|417847292|ref|ZP_12493260.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
mitis SK1073]
gi|339456940|gb|EGP69521.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
mitis SK1073]
Length = 450
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 106/374 (28%), Positives = 183/374 (48%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A S K V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTA----SDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTVADFLVLNF-NQDLAKELATK--TQATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V +I+G+ + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-EIKGIKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVDATDIADATRKAYEFATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|298377157|ref|ZP_06987111.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
3_1_19]
gi|298266141|gb|EFI07800.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
3_1_19]
Length = 445
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 113/391 (28%), Positives = 191/391 (48%), Gaps = 35/391 (8%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G ++SE++FA + K++ +TG+NGK+T +L G++
Sbjct: 76 KAPIIQLLKKQGTPIISEIEFAGRYTDS--KMICITGSNGKTTTTMLTYHILKEAGVDVG 133
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+GN L AL ++ V V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 134 LAGNVGNSL--------ALQVAEDPHAVYVIELSSFQLD--NMYDFRADIAIILNITPDH 183
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQH---LNEAIKGHRFNLAWIGAFP-- 186
L+R+ M+NY K + + TK F N E K H + A
Sbjct: 184 LDRYNYEMQNYVDAKFRILQNQ--TKDDAFIFWNDDPIIAREIAKRHPEATLYPFAETYE 241
Query: 187 -GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
GVK TE E V ++ + + G HN +N+ + ++ +DI E +
Sbjct: 242 NGVKGYTENNQVVIET--VNGTFTMEQDLLALTGTHNLYNSLASGIASKIVDIHD--EKI 297
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKV 305
+++ HR++ V R ++GV +++DSKATN+ + L + V++LGG K
Sbjct: 298 RASLSDFTGVEHRLEKVLR-VRGVDYINDSKATNVNSCWYALQSMTT-PVVLILGGTDK- 354
Query: 306 LNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR 365
G + + E+L+ H +I G + +G +M++AV A +
Sbjct: 355 --GNDYSEIEELVNKKVH--SLIFMGVDNTKLHAFF--DGKVANIEDARSMEEAVAKAYK 408
Query: 366 MATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
MA GD ++LSP CASFD F+++E RG F+
Sbjct: 409 MAHKGDTVLLSPCCASFDLFKSYEDRGDQFK 439
>gi|134298541|ref|YP_001112037.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Desulfotomaculum reducens MI-1]
gi|189082878|sp|A4J2A9.1|MURD_DESRM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|134051241|gb|ABO49212.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfotomaculum
reducens MI-1]
Length = 456
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 121/384 (31%), Positives = 186/384 (48%), Gaps = 39/384 (10%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL-SEAA 86
V+ EL+ A + I+A+TGTNGK+T T GQ+ G + V GN+G P+ SE
Sbjct: 95 VLGELELAYRF--AKAPIVAITGTNGKTTTTTLTGQLFRDAGFKTLVAGNIGLPMVSEIE 152
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ + + V EVSS+Q+E +YF P V+V+LNLTPDHL+RH +M+ Y K
Sbjct: 153 NYQVG--------DIVVAEVSSFQLET-TEYFAPKVAVMLNLTPDHLDRHGSMEEYIKAK 203
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKG--------HRFNLAWIGAF-PGVKIDTEAKTA 197
+F H + +L + + L E K R ++ G+F KI K
Sbjct: 204 SCIFIHQKPSDYVVLNYDDLALRELAKSCPSQVIFFSRQHIIEKGSFIQNDKIMVSGKGG 263
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
EV + ++ +++ G HN NA A + L G+ + T+ H
Sbjct: 264 PEEV--------IDVNALRIPGPHNLENALAATAAAYTL--GLSPRDIAGTLGRFTGVAH 313
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R++ V +I GV +V+DSK TN +A L +++ GG+ K G N F K
Sbjct: 314 RLEFVA-NINGVEYVNDSKGTNPDAAIKALESYDA-PIILIAGGKNK---GISFNDFAKK 368
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
I+ R +IT G G I + G + + V + AV AR+ A G+ ++LSP
Sbjct: 369 IK--EKVRVLITLGVHGYQIEEAAREQGFT-NIYPVEDYAQAVQLARKQAKPGEIVLLSP 425
Query: 378 GCASFDEFRNFEHRGMVFQELAFS 401
C S+D F++FE RG +F++L
Sbjct: 426 ACTSWDMFKSFEERGELFKKLVLE 449
>gi|295696465|ref|YP_003589703.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kyrpidia tusciae
DSM 2912]
gi|295412067|gb|ADG06559.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kyrpidia tusciae
DSM 2912]
Length = 454
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 123/390 (31%), Positives = 194/390 (49%), Gaps = 38/390 (9%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+A ++ G V++EL+ A ++ P + L +TGTNGK+T ++VG ML G+ V GN
Sbjct: 88 VAEAIRRGIPVVTELEVAWRIRPENW--LGITGTNGKTTTTSWVGHMLEVAGVPHRVAGN 145
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G PL + A+ S + V E+SS+Q++ + F P + +LN+ P HL+ H
Sbjct: 146 IGVPLCDV---VEAIDSE----EWLVAELSSFQLQGTLR-FRPHIGAILNIYPAHLDYHG 197
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA-----FPGVKIDT 192
++ YA K ++F + +L G + ++ + G R A G PG+ ++
Sbjct: 198 GLEAYAAAKKNMFVNQGPEDYAVLNGGRKDEHQLMAGVRARPARFGGPRRPGVPGMAVEG 257
Query: 193 EAKT--ASFEVPAVGVVSQLQLHNMKVMGRHNYHN-AAVAALSVLGLDIGVDVEALNSTI 249
+ F V V + L G HN N A L+VL G + A+ ++
Sbjct: 258 DRVLWWDGFRAEPVCAVGDVALP-----GEHNLENFLAAGTLAVLA---GASLSAVATSG 309
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
R HRM+ V R QGVT+ +DSKATN EA L K VI + G
Sbjct: 310 RTFRGVEHRMEFV-RQWQGVTFYNDSKATNPEAAFRALGAFP--KNVIWIAGGL-----D 361
Query: 310 ESNGFEKLIEPLNHHR--CVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA 367
+ + +L+ L R V+T G SG I + + IP VA++++AV A +A
Sbjct: 362 RGDDYRRLLPLLQEGRVKTVLTMGQSGPRI--AALAQEVGIPVRRVADVEEAVRIAVSLA 419
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
GD ++LSPG AS+D++R+FE RG +F+E
Sbjct: 420 RGGDVVLLSPGAASWDQYRSFEERGRMFKE 449
>gi|261211501|ref|ZP_05925789.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC341]
gi|260839456|gb|EEX66082.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC341]
Length = 440
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 120/424 (28%), Positives = 194/424 (45%), Gaps = 81/424 (19%)
Query: 5 WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + G+A +L +G V+ +++ A + ++A+TG+NGKSTV
Sbjct: 65 WLLSADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV--DTPVIAITGSNGKSTV 122
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E +
Sbjct: 123 TDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLETTSSL 173
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTK-----------LGLLP 162
+ LNL+ DH++R++ M++Y K +F H +VN L ++
Sbjct: 174 KL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFGHAETAVVNADDTQTFPDHAAHLQVVT 232
Query: 163 FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
FG +H +F++A + EA A E + ++GRHN
Sbjct: 233 FGVEH------AAQFSVAQHQGREYLFARDEAVMACAE--------------LSLVGRHN 272
Query: 223 YHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+
Sbjct: 273 VANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNV 327
Query: 281 EATCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWK 339
+T L LK + +L+GG K G + ++ L C FG
Sbjct: 328 ASTLAALSGLKIEGQLYLLVGGVGK---GADFTPLAPVLATLPVQLC--CFG-------- 374
Query: 340 TLVNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
V+ +P A D+ + R +GD ++LSP CASFD+F+NF RG +F
Sbjct: 375 --VDGDKFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIF 432
Query: 396 QELA 399
+LA
Sbjct: 433 AQLA 436
>gi|255015709|ref|ZP_05287835.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides sp.
2_1_7]
gi|410104833|ref|ZP_11299744.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides sp.
D25]
gi|409233408|gb|EKN26245.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides sp.
D25]
Length = 441
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 113/391 (28%), Positives = 190/391 (48%), Gaps = 35/391 (8%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G ++SE++FA + K++ +TG+NGK+T +L G++
Sbjct: 72 KAPIIQLLKKQGTPIISEIEFAGRYTDS--KMICITGSNGKTTTTMLTYHILKEAGVDVG 129
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+GN L AL ++ V V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 130 LAGNVGNSL--------ALQVAEDPHAVYVIELSSFQLD--NMYDFRADIAIILNITPDH 179
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQH---LNEAIKGHRFNLAWIGAFP-- 186
L+R+ M+NY K + + TK F N E K H + A
Sbjct: 180 LDRYNYEMQNYVDAKFRILQNQ--TKDDAFIFWNDDPIIAREIAKRHPEATLYPFAETHE 237
Query: 187 -GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
GVK TE E + L + + G HN +N+ + ++ +DI E +
Sbjct: 238 NGVKGYTENNQVVIETANGTFTMEQDL--LALTGTHNLYNSLASGIASKIVDIHD--EKI 293
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKV 305
+++ HR++ V R ++GV +++DSKATN+ + L + V++LGG K
Sbjct: 294 RASLSDFTGVEHRLEKVLR-VRGVDYINDSKATNVNSCWYALQSMTT-PVVLILGGTDK- 350
Query: 306 LNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR 365
G + + E+L+ H +I G + +G +M++AV A +
Sbjct: 351 --GNDYSEIEELVNKKVH--SLIFMGVDNTKLHAFF--DGKVANIEDARSMEEAVAKAYK 404
Query: 366 MATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
MA GD ++LSP CASFD F+++E RG F+
Sbjct: 405 MAHKGDTVLLSPCCASFDLFKSYEDRGDQFK 435
>gi|229514032|ref|ZP_04403494.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
TMA 21]
gi|229349213|gb|EEO14170.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
TMA 21]
Length = 467
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 113/371 (30%), Positives = 172/371 (46%), Gaps = 60/371 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G + N G++A VGGN+G P AL P ++ V+
Sbjct: 137 VIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVL 187
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLG 159
E+SS+Q+E + + LNL+ DH++R++ M++Y K +F H +VN
Sbjct: 188 ELSSFQLETTSSLKLKA-AAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQ 246
Query: 160 LLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM 215
P HL G +F+LA + EA A E +
Sbjct: 247 TFPDHAAHLQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------L 292
Query: 216 KVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
++GRHN N +A L G++ + ++AL S + HR Q+V D G+ WV+
Sbjct: 293 SLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVN 347
Query: 274 DSKATNLEATCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGY 332
DSKATN+ +T L LK + +L+GG K G + ++ L C FG
Sbjct: 348 DSKATNVASTLAALSGLKIEGQLYLLVGGVGK---GADFTPLAPVLATLPVQLCC--FGV 402
Query: 333 SGVLIWKTLVNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNF 388
G +P A D+ + R +GD ++LSP CASFD+F+NF
Sbjct: 403 DGHQF----------MPLHPSARFYDSMESIIRSIRTQLKSGDMVLLSPACASFDQFKNF 452
Query: 389 EHRGMVFQELA 399
RG +F +LA
Sbjct: 453 MARGDIFAQLA 463
>gi|225028113|ref|ZP_03717305.1| hypothetical protein EUBHAL_02383 [Eubacterium hallii DSM 3353]
gi|224954583|gb|EEG35792.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Eubacterium
hallii DSM 3353]
Length = 453
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 119/379 (31%), Positives = 186/379 (49%), Gaps = 31/379 (8%)
Query: 26 KRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85
K V E++ AA KI A+TGTNGK+T VG +L FV GN+G P
Sbjct: 94 KPVWGEIELAAHFAKG--KIAAITGTNGKTTTTALVGSILREYYKSVFVVGNIGIP---- 147
Query: 86 AFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALT 145
F +AL +++ V E+SS+Q+E F P VS VLN+TPDHL+RH TM+ YA T
Sbjct: 148 -FTSVALDTTED--SVIAAEISSFQLETTID-FQPEVSAVLNVTPDHLDRHGTMEVYADT 203
Query: 146 KCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVG 205
K + ++ +L + + E K + + +F + G
Sbjct: 204 KFSISKKQNKEQVIVLNYDDPITREMAKKATARPVMFSRLEELDEGIVLRGDTFIIKEDG 263
Query: 206 VVSQLQL---HNMKVMGRHNYHNAAVAALSVLGLD--IGVDVEALNSTIEILRTPPHRMQ 260
+L + +K++G HN+ N L+ +G+ +GV VE + + HR++
Sbjct: 264 --KELPVCTTSEIKLLGSHNHENI----LAAIGITYYMGVPVEQIRDAVMKFTAVEHRIE 317
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP 320
V + GV + +DSK TN +A G+ + K ILLGG + + +++ I+
Sbjct: 318 YVDT-VDGVDYYNDSKGTNPDAAIKGISAMT--KPTILLGG-----GYDKKSTYDEWIDA 369
Query: 321 LNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 379
+ R +I G + I T N+G FA ++A+N A+ A GDA++LSP C
Sbjct: 370 FHGKVRYLIVMGATAQAIADTAKNHGFHNVIFA-DTFEEAMNIAKEKARPGDAVLLSPAC 428
Query: 380 ASFDEFRNFEHRGMVFQEL 398
AS+ F+N+E RG VF+E+
Sbjct: 429 ASWGMFKNYEVRGKVFKEI 447
>gi|421235858|ref|ZP_15692459.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2071004]
gi|395604777|gb|EJG64909.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2071004]
Length = 450
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 106/374 (28%), Positives = 183/374 (48%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + + K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIATDKNTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGLFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L VD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-DVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|254430906|ref|ZP_05044609.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cyanobium sp. PCC
7001]
gi|197625359|gb|EDY37918.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cyanobium sp. PCC
7001]
Length = 473
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 118/395 (29%), Positives = 178/395 (45%), Gaps = 30/395 (7%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L G RV E+ A R + + +TGTNGK+TV V +L G++A + GN
Sbjct: 95 LTALRSRGVRVQGEM-VPAWEASRPVPWIGITGTNGKTTVTHLVHHLLEASGLDAPMAGN 153
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G +E + P + VVE+SSYQ+E + P V + LTPDHLERH
Sbjct: 154 VGYSAAELVLDRRGSGAELPTWM--VVELSSYQIEAAPE-VAPRVGIWTTLTPDHLERHG 210
Query: 138 TMKNY-ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT 196
T++ Y A+ + L V G P +H W+ A P ++ EA
Sbjct: 211 TLEAYRAIKRSLLERSQVQVLNGDDPDLQRH-----AASWPGACWVTAGPRQEL-PEAIR 264
Query: 197 ASFEVPAVGVVSQLQLHNMKVM--------GRHNYHNAAVAALSVLGLDIGVDVEALNST 248
V A V+ + +M G HN N +A + GL+ G+ + +
Sbjct: 265 PHLWVEAGRVIRDHNGTSQDLMAADCLAMPGEHNRQNMMLAIAA--GLEAGLTGQQMECA 322
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG 308
PHR++ + + GV++ +DSKATN +A + L G V+L GGQAK G
Sbjct: 323 FRSFPGVPHRLERIDQQA-GVSYYNDSKATNYDAAEVAVRALAG-PLVVLAGGQAK--RG 378
Query: 309 QESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMAT 368
+ E L + R V+ FG + L + + +AV AR +A
Sbjct: 379 EARGWLEALHQ---KARAVVLFGAAQAEFQALLEGASFAGAIHRCDGLNEAVPLARALAA 435
Query: 369 --NGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 401
+ A++LSP CASFD++ +FE RG F+ L +
Sbjct: 436 ELHCRAVLLSPACASFDQYTDFEARGEHFRSLVLA 470
>gi|161581989|ref|NP_232033.2| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
cholerae O1 biovar El Tor str. N16961]
gi|254849525|ref|ZP_05238875.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae
MO10]
gi|298500237|ref|ZP_07010042.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae MAK
757]
gi|254845230|gb|EET23644.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae
MO10]
gi|297540930|gb|EFH76984.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae MAK
757]
Length = 444
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 125/423 (29%), Positives = 193/423 (45%), Gaps = 72/423 (17%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELD-FAAQVIPRSIKILAVTGTN 52
W L WL + + G+A +L +G V+ +++ FA V ++A+TG+N
Sbjct: 65 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV---DTPVIAITGSN 121
Query: 53 GKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME 112
GKSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 122 GKSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLE 172
Query: 113 IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQH 167
+ + LNL+ DH++R++ M++Y K +F H +VN P H
Sbjct: 173 TTSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAH 231
Query: 168 LNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
L G +F+LA + EA A E + ++GRHN
Sbjct: 232 LQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------LSLVGRHNV 277
Query: 224 HN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE 281
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+
Sbjct: 278 ANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVA 332
Query: 282 ATCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKT 340
+T L LK + +L+GG K G + ++ L C FG G
Sbjct: 333 STLAALSGLKIEGQLYLLVGGVGK---GADFTPLAPVLATLPVQLC--CFGVDGHQF--- 384
Query: 341 LVNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
+P A D+ + R +GD ++LSP CASFD+F+NF RG +F
Sbjct: 385 -------MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFA 437
Query: 397 ELA 399
+LA
Sbjct: 438 QLA 440
>gi|329964558|ref|ZP_08301612.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
fluxus YIT 12057]
gi|328524958|gb|EGF52010.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
fluxus YIT 12057]
Length = 466
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 107/385 (27%), Positives = 187/385 (48%), Gaps = 37/385 (9%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G V+SE++FA + K++ +TG+NGK+T + + + G+ + GN+G+
Sbjct: 104 LKEKGTPVISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGS 161
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL + K ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 162 SL--------ALQVATEKHDYYIIELSSFQLD--NMYKFRANIAVLMNITPDHLDRYDHC 211
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHL-NEAIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + P + L +K H + A + GV E
Sbjct: 212 MQNYVDAKFRITQNQTPDDAFIYWNDDPIIKRELAKHGLKAHLYPFAAVKK-DGVIAYVE 270
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
P + ++ + + G HN +N+ A +S L G+ E + + +
Sbjct: 271 DGEVEINEP---IAFNMEQEELALRGTHNLYNSLAAGISA-NL-AGIRKEYIRKALSDFK 325
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
HR++ V ++GV +++DSKATN+ + L + K V++LGG+ K N
Sbjct: 326 GVEHRLEKVAT-VRGVQFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK------GND 377
Query: 314 FEKLIEPLNHHRC--VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD 371
+ + IE L C ++ G + + GL + MKDAV+ A R+A G+
Sbjct: 378 YTE-IEDLVRKNCSGLVYLGLHNEKLHEFFDRMGLPVADVQTG-MKDAVDAAFRLAKKGE 435
Query: 372 AIVLSPGCASFDEFRNFEHRGMVFQ 396
++LSP CASFD F+++E RG F+
Sbjct: 436 TVLLSPCCASFDLFKSYEDRGDQFK 460
>gi|89074172|ref|ZP_01160671.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Photobacterium sp. SKA34]
gi|89050108|gb|EAR55634.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Photobacterium sp. SKA34]
Length = 446
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 124/411 (30%), Positives = 201/411 (48%), Gaps = 54/411 (13%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + G+A ++G ++ +++ A+ + + ++A+TG+NGKSTV
Sbjct: 65 WLLSADLIVASPGIALATPELVVAAEAGIEIVGDIELFAREVDK--PVVAITGSNGKSTV 122
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
+ VG+M G+ VGGN+G AA +A + + V+E+SS+Q+E
Sbjct: 123 TSLVGEMAKEAGVNVGVGGNIGF----AALDMLA-----QQHALYVLELSSFQLETTTSL 173
Query: 118 FCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR 176
T +V LNL+ DH++R+ + Y+ K +F H KL + F L A K +
Sbjct: 174 EL-TAAVYLNLSEDHMDRYPGGLAQYSQAKMRIFDH---AKLAV--FNRDDL--ATKPTQ 225
Query: 177 FNLAWIGAFPGVKIDTEAKTASF----EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALS 232
F+ GA D + E AV + + + ++ ++GRHN N A
Sbjct: 226 FS----GAMTSFGFDDQDYGIVLVDGKEWLAVNGEAVMAVTDIALVGRHNVANCLAALAL 281
Query: 233 VLGLDIGVDVEALNSTIEILRTPPHRMQI-VHRDIQGVTWVDDSKATNLEATCTGL--MD 289
G+ +A ++ HR Q+ V+R GV WV+DSKATNL +T L +
Sbjct: 282 ADA--AGIPRDAAYRAMQRYTGLAHRCQLAVNR--HGVRWVNDSKATNLASTLAALNGLQ 337
Query: 290 LKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIP 349
L+G K +L+GG +K G E + + ++ LN + +FG L + +V+N +S
Sbjct: 338 LEG-KLHLLMGGDSK---GAEFSELKPILADLNVQ--LYSFGRDRHL-FNDVVDNAIS-- 388
Query: 350 CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAF 400
V MKDA+ R +GD ++LSP CAS+D+F NF RG F E A
Sbjct: 389 ---VETMKDAMVCISRTVQSGDMVLLSPACASWDQFANFMARGDAFVEQAI 436
>gi|333371327|ref|ZP_08463281.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase, partial
[Desmospora sp. 8437]
gi|332976299|gb|EGK13157.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Desmospora sp.
8437]
Length = 386
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 188/378 (49%), Gaps = 29/378 (7%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V++E++ A Q+ S+ + +TG+NGK+T + VG+ML GI A V GN+G LSE
Sbjct: 28 GIPVVTEVEIAWQLTEASM--IGITGSNGKTTTTSLVGRMLARGGIPARVAGNIGMALSE 85
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
A + + + E+SS+Q++ + F P + +LNL P HL+ H +M++Y
Sbjct: 86 VA-------PGMDQEEWLISELSSFQLK-GTRQFRPRIGALLNLVPAHLDYHGSMEDYLE 137
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA--SFEVP 202
+K LF++ + +L + R ++ W V K + +P
Sbjct: 138 SKGKLFANQQPGDIAVLNRDSDVCRRLAPQLRGDVWWFSRQEPVDRGLMVKQGWVTARLP 197
Query: 203 AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
+S L +++ G H + A +A+++ G +AL + HR++ V
Sbjct: 198 DGEELSLLPASQVRLPGIHMENALAASAIALA---AGCPADALREELRTFTGVEHRLEFV 254
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322
+ GV + +DSKATN +A T M+ V++ GG + ++ F +L+ P+
Sbjct: 255 A-TVDGVRYYNDSKATNGKA-ATSAMESFTEPIVLIAGGLDRGVD------FRELV-PVF 305
Query: 323 HHRC--VITFGYSGVLIWKTLVNNGLSIPCFAVAN-MKDAVNHARRMATNGDAIVLSPGC 379
R ++T+G +G ++ K S+P A + DAV A R+A GD ++LSP C
Sbjct: 306 QKRLKGIVTYGEAGDVLLKRAEEA--SVPLRERAEEIADAVTRASRLAAAGDVVLLSPAC 363
Query: 380 ASFDEFRNFEHRGMVFQE 397
AS+D + +FE RG +F++
Sbjct: 364 ASWDLYTSFEERGSIFKQ 381
>gi|308271438|emb|CBX28046.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [uncultured
Desulfobacterium sp.]
Length = 468
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 123/405 (30%), Positives = 200/405 (49%), Gaps = 65/405 (16%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
++G ++ E++ A++ I I +A+TGTNGK+T G+ML G++ FVGGN+GNPL
Sbjct: 90 KNGASIIGEIELASRFIKEPI--VAITGTNGKTTTTILTGKMLEESGLKVFVGGNIGNPL 147
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
I S K + V E+SS+Q++ +YF P VSV+LN+T DHL+R+ Y
Sbjct: 148 -------IDYVDSGNKADIVVAEISSFQLDTI-EYFSPKVSVLLNITEDHLDRYPDFNAY 199
Query: 143 ALTKCHLFSHMVNTKLG----------------------LLPFGNQH-LNE-----AIKG 174
A +K +F +N K G +LPF N + LN+ I
Sbjct: 200 AKSKMRIF---INQKDGDYAVFNASDKHISLMAKDIKCRILPFFNHNTLNDYNEFAKIAD 256
Query: 175 HR--FNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALS 232
R FN+ I A + D +FE L + ++G+HN N VAA +
Sbjct: 257 DRIVFNINNIAA---INSDATNPDKTFEKEF-----SLPFSGIHLLGKHNMEN--VAAAT 306
Query: 233 VLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG 292
+ L G ++ + S +E ++ PHR++ V I GV + +DSKAT +++ L ++
Sbjct: 307 LATLAAGGNIAGIKSALEKFKSLPHRIEHVAT-INGVEYYNDSKATTVDSVIKAL-EVFN 364
Query: 293 HKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCF 351
++++GG+ K N F L + H + +I G S I +L G +
Sbjct: 365 KPVILIMGGRNKGSN------FALLADAAKKHVKRLILIGESKEEIKSSL---GGIVETT 415
Query: 352 AVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
++++AV A + A + ++LSP C+SFD F ++ HRG F+
Sbjct: 416 LSDSLENAVVTASKFAETDEVVLLSPACSSFDMFTSYAHRGETFR 460
>gi|168187060|ref|ZP_02621695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
botulinum C str. Eklund]
gi|169295070|gb|EDS77203.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
botulinum C str. Eklund]
Length = 458
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 121/396 (30%), Positives = 187/396 (47%), Gaps = 62/396 (15%)
Query: 24 SGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
SG + SE++ + P +I +TG++GK+T T V +L G +VGGN+GNPL
Sbjct: 100 SGAYITSEMEEFIKYCPA--RIFGITGSDGKTTTTTLVYNILMTEGYRTWVGGNIGNPL- 156
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
F I + K V+E+SS+Q M + + C ++V NL+P+HL+ HK M+ Y
Sbjct: 157 ---FASIEEMKEEDK---VVLELSSFQLMTMEEEINC---ALVTNLSPNHLDIHKDMEEY 207
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQ---HLNEAIKGH-----RFNLAWIGAF-PGVKIDTE 193
K ++F + N L +L N L E KG R GA+ G K+
Sbjct: 208 VDAKKNVFKYQENKDLLVLNKDNDITNSLTEEAKGRVMKFSRKEEIKDGAYLNGDKLVLL 267
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
K E+ +G ++K+ G HN N +AA ++ D +E++
Sbjct: 268 GK----EICTLG--------DIKLKGMHNVENL-LAAFCLVSED--ASIESMAKVATTFT 312
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
HR + V ++I GV + +DS A++ T GL K VIL+ G G
Sbjct: 313 GVQHRCEFV-KEIDGVKYYNDSIASSPTRTIAGLRAF--EKPVILIAG-----------G 358
Query: 314 FEKLI--EPLNHH-----RCVITFGYSGVLIW----KTLVNNGLSIPCFAVANMKDAVNH 362
++K I EPL + ++ G + I K + + G+SIP + +A+
Sbjct: 359 YDKHIPFEPLAEEGYDKIKALVLTGLTKDKIKDAFDKVMKDRGISIPIYMEEGFNEAIYR 418
Query: 363 ARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
A+ +A GD + LSP CASFD F NFE RG F+E+
Sbjct: 419 AKDIAKEGDIVTLSPACASFDMFPNFEIRGNRFKEI 454
>gi|294501021|ref|YP_003564721.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
megaterium QM B1551]
gi|294350958|gb|ADE71287.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
megaterium QM B1551]
Length = 449
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 115/385 (29%), Positives = 184/385 (47%), Gaps = 36/385 (9%)
Query: 21 LLQSG-KR---VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG 76
LLQ KR +++E++ A ++ + +TG+NGK+T T + +ML + + G
Sbjct: 87 LLQEALKRNIPILTEVELAYEI--SEAPFIGITGSNGKTTTTTLIYKMLEEDQKQPLIAG 144
Query: 77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH 136
N+G E A K V V E+SS+Q+ K F P +S++LNL HL+ H
Sbjct: 145 NIGTVACEVA-------QKATKDNVIVTELSSFQLMGIEK-FRPKISLLLNLFDAHLDYH 196
Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEA---IKGHRFNLAWIG-AFPGVKIDT 192
T + Y K +LF++ + ++ ++ + +A +K + + G I
Sbjct: 197 GTKEEYIKAKANLFNNQTSEDFAVINADDELVMKASADVKATKVPFSVTAQTTEGAYIKN 256
Query: 193 EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
E T F+ V + L ++ + G+HN N +AA+SV+ L G EA+ +
Sbjct: 257 E--TIFFKDEEV-----MSLKDVVLPGKHNQENI-LAAVSVVKL-YGCSNEAIYRVLTTF 307
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
HR+Q V I + +DSKATN+ AT L ++L GG + N
Sbjct: 308 AGVKHRVQYVTT-INKRKFYNDSKATNMLATKVALSAF-SQPTILLAGGLDR------GN 359
Query: 313 GFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 372
F+ L E + + VITFG + I + G+ I V N+K AV+ A + D
Sbjct: 360 EFDDLKEEFKNVKAVITFGETAPKIERVAKEAGIQI-VKRVDNVKQAVSEAYACSDEEDV 418
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQE 397
I+LSP CAS+D+F+ FE RG +F E
Sbjct: 419 ILLSPACASWDQFKTFEERGDIFIE 443
>gi|262190386|ref|ZP_06048646.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae CT
5369-93]
gi|262033726|gb|EEY52206.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae CT
5369-93]
Length = 440
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 123/422 (29%), Positives = 192/422 (45%), Gaps = 70/422 (16%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + ++A+TG+NG
Sbjct: 61 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV--DTPVIAITGSNG 118
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 119 KSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLET 169
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQHL 168
+ + LNL+ DH++R++ M++Y K +F H +VN P HL
Sbjct: 170 TSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAHL 228
Query: 169 NEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYH 224
G +F+LA + EA A E + ++GRHN
Sbjct: 229 QVVTFGVEQAAQFSLAQHQGREYLVARNEAFMACAE--------------LSLVGRHNVA 274
Query: 225 N--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+ +
Sbjct: 275 NVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVAS 329
Query: 283 TCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTL 341
T L LK + +L+GG K G + ++ L C FG G
Sbjct: 330 TLAALSGLKIEGQLYLLVGGVGK---GADFTPLAPVLATLPVQLC--CFGVDGHQF---- 380
Query: 342 VNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
+P A D+ + R +GD ++LSP CASFD+F+NF RG +F +
Sbjct: 381 ------MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQ 434
Query: 398 LA 399
LA
Sbjct: 435 LA 436
>gi|15616836|ref|NP_240048.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
aphidicola str. APS (Acyrthosiphon pisum)]
gi|11133470|sp|P57313.1|MURD_BUCAI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|25293622|pir||F84955 UDP-N-acetylmuramoylalanine-D-glutamate ligase (EC 6.3.2.9)
[imported] - Buchnera sp. (strain APS)
gi|10038899|dbj|BAB12934.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
str. APS (Acyrthosiphon pisum)]
Length = 440
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 107/386 (27%), Positives = 197/386 (51%), Gaps = 52/386 (13%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++S+++ ++ + + I+++TGTNGKSTV T + ++ G +AF+GGN+G P+ E
Sbjct: 90 GIEIISDIELFSREV--TCPIISITGTNGKSTVATMIEKIAKKSGYKAFLGGNIGVPVLE 147
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHKT-MKNY 142
+ + ++E+SS+Q+E N + ++V+LN++ DH+ R+ + Y
Sbjct: 148 IL---------DKEADLYIIELSSFQLE--NTFNLKSKIAVILNISEDHINRYPNGFQQY 196
Query: 143 ALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
TK +++ ++N+ N + +++ H N WI +F + D + S
Sbjct: 197 KNTKLSVYNQAEICIINS--------NDKIEKSLI-HSKNKKWI-SFGTNRSDYRICSKS 246
Query: 199 FEVPAVGVVSQLQLHNMKVM--GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT-- 254
+ P + ++ L+ +++ G HNY+N V+ L + + N I +L++
Sbjct: 247 ND-PILFFKNKKILNTSEILLYGYHNYNNILVS----LAISDAMQFPR-NDAINVLKSFS 300
Query: 255 -PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKVLNGQESN 312
PHR QI+ + +GV W++DSK+TN+ +T L +K + +LLGG +K N N
Sbjct: 301 NLPHRFQIIKNE-KGVRWINDSKSTNVNSTQVALNSIKTTGTIRLLLGGDSKSAN---FN 356
Query: 313 GFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 372
+ + L + FG G+ + K + V N+K AV + +GD
Sbjct: 357 ILKNIFRTLKIK--IYCFGRDGIKLSKICEKKSI-----YVENLKKAVILISKQVKSGDT 409
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQEL 398
++LSPGC+S +F NFE RG +F +L
Sbjct: 410 VLLSPGCSSLGQFSNFEERGNLFIKL 435
>gi|121587626|ref|ZP_01677390.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
2740-80]
gi|153818416|ref|ZP_01971083.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
NCTC 8457]
gi|153830351|ref|ZP_01983018.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
623-39]
gi|255746924|ref|ZP_05420869.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholera
CIRS 101]
gi|262161533|ref|ZP_06030643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
INDRE 91/1]
gi|360036277|ref|YP_004938040.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
cholerae O1 str. 2010EL-1786]
gi|379742192|ref|YP_005334161.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
cholerae IEC224]
gi|417814419|ref|ZP_12461072.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-49A2]
gi|418335404|ref|ZP_12944313.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-06A1]
gi|418339367|ref|ZP_12948257.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-23A1]
gi|418346939|ref|ZP_12951692.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-28A1]
gi|418350696|ref|ZP_12955427.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-43A1]
gi|418355998|ref|ZP_12958717.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-61A1]
gi|421318515|ref|ZP_15769083.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1032(5)]
gi|421325950|ref|ZP_15776474.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1041(14)]
gi|421333564|ref|ZP_15784041.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1046(19)]
gi|422897494|ref|ZP_16934933.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-40A1]
gi|422903692|ref|ZP_16938657.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-48A1]
gi|422907577|ref|ZP_16942370.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-70A1]
gi|422914417|ref|ZP_16948921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HFU-02]
gi|422926621|ref|ZP_16959633.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-38A1]
gi|423145944|ref|ZP_17133537.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-19A1]
gi|423150620|ref|ZP_17137933.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-21A1]
gi|423154454|ref|ZP_17141618.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-22A1]
gi|423157522|ref|ZP_17144614.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-32A1]
gi|423731954|ref|ZP_17705255.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-17A1]
gi|423770797|ref|ZP_17713520.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-50A2]
gi|423896731|ref|ZP_17727563.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-62A1]
gi|423931934|ref|ZP_17731956.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-77A1]
gi|424003370|ref|ZP_17746444.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-17A2]
gi|424007163|ref|ZP_17750132.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-37A1]
gi|424025143|ref|ZP_17764792.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-62B1]
gi|424028029|ref|ZP_17767630.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-69A1]
gi|424587308|ref|ZP_18026886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1030(3)]
gi|424595964|ref|ZP_18035282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1040(13)]
gi|424599873|ref|ZP_18039051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio Cholerae
CP1044(17)]
gi|424607568|ref|ZP_18046508.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1050(23)]
gi|424611386|ref|ZP_18050224.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-39A1]
gi|424614210|ref|ZP_18052994.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-41A1]
gi|424618179|ref|ZP_18056849.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-42A1]
gi|424645922|ref|ZP_18083656.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-56A2]
gi|424653693|ref|ZP_18091072.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-57A2]
gi|440710629|ref|ZP_20891277.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
4260B]
gi|443504743|ref|ZP_21071695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-64A1]
gi|443508649|ref|ZP_21075404.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-65A1]
gi|443512487|ref|ZP_21079120.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-67A1]
gi|443516046|ref|ZP_21082551.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-68A1]
gi|443519837|ref|ZP_21086225.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-71A1]
gi|443524733|ref|ZP_21090936.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-72A2]
gi|443532317|ref|ZP_21098331.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-7A1]
gi|443536130|ref|ZP_21101997.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-80A1]
gi|443539659|ref|ZP_21105512.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-81A1]
gi|449055156|ref|ZP_21733824.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae O1
str. Inaba G4222]
gi|30316132|sp|Q9KPG5.2|MURD_VIBCH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|121548136|gb|EAX58209.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
2740-80]
gi|126511049|gb|EAZ73643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
NCTC 8457]
gi|148874158|gb|EDL72293.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
623-39]
gi|255735326|gb|EET90726.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholera
CIRS 101]
gi|262028844|gb|EEY47498.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
INDRE 91/1]
gi|340036905|gb|EGQ97881.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-49A2]
gi|341619867|gb|EGS45654.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-70A1]
gi|341619975|gb|EGS45761.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-48A1]
gi|341620672|gb|EGS46438.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-40A1]
gi|341636229|gb|EGS60931.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HFU-02]
gi|341645622|gb|EGS69751.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-38A1]
gi|356416439|gb|EHH70070.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-06A1]
gi|356417297|gb|EHH70915.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-21A1]
gi|356422188|gb|EHH75671.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-19A1]
gi|356427659|gb|EHH80900.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-22A1]
gi|356428327|gb|EHH81554.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-23A1]
gi|356429467|gb|EHH82683.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-28A1]
gi|356438992|gb|EHH91992.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-32A1]
gi|356445192|gb|EHH98001.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-43A1]
gi|356452496|gb|EHI05175.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-61A1]
gi|356647431|gb|AET27486.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
cholerae O1 str. 2010EL-1786]
gi|378795702|gb|AFC59173.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
cholerae IEC224]
gi|395916773|gb|EJH27603.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1032(5)]
gi|395917788|gb|EJH28616.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1041(14)]
gi|395928966|gb|EJH39719.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1046(19)]
gi|395957799|gb|EJH68319.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-56A2]
gi|395958258|gb|EJH68756.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-57A2]
gi|395960906|gb|EJH71257.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-42A1]
gi|395972113|gb|EJH81725.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1030(3)]
gi|408006240|gb|EKG44409.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-39A1]
gi|408011032|gb|EKG48869.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-41A1]
gi|408030692|gb|EKG67344.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1040(13)]
gi|408040709|gb|EKG76874.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio Cholerae
CP1044(17)]
gi|408041986|gb|EKG78062.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1050(23)]
gi|408622399|gb|EKK95383.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-17A1]
gi|408632924|gb|EKL05345.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-50A2]
gi|408653526|gb|EKL24688.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-77A1]
gi|408654019|gb|EKL25162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-62A1]
gi|408844262|gb|EKL84394.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-37A1]
gi|408845019|gb|EKL85140.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-17A2]
gi|408869532|gb|EKM08828.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-62B1]
gi|408878305|gb|EKM17315.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-69A1]
gi|439973958|gb|ELP50162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
4260B]
gi|443430822|gb|ELS73380.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-64A1]
gi|443434652|gb|ELS80804.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-65A1]
gi|443438545|gb|ELS88265.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-67A1]
gi|443442582|gb|ELS95890.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-68A1]
gi|443446471|gb|ELT03135.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-71A1]
gi|443449186|gb|ELT09487.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-72A2]
gi|443457707|gb|ELT25104.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-7A1]
gi|443460633|gb|ELT31717.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-80A1]
gi|443464789|gb|ELT39450.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-81A1]
gi|448265198|gb|EMB02433.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae O1
str. Inaba G4222]
Length = 440
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 125/423 (29%), Positives = 193/423 (45%), Gaps = 72/423 (17%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELD-FAAQVIPRSIKILAVTGTN 52
W L WL + + G+A +L +G V+ +++ FA V ++A+TG+N
Sbjct: 61 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV---DTPVIAITGSN 117
Query: 53 GKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME 112
GKSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 118 GKSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLE 168
Query: 113 IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQH 167
+ + LNL+ DH++R++ M++Y K +F H +VN P H
Sbjct: 169 TTSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAH 227
Query: 168 LNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
L G +F+LA + EA A E + ++GRHN
Sbjct: 228 LQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------LSLVGRHNV 273
Query: 224 HN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE 281
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+
Sbjct: 274 ANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVA 328
Query: 282 ATCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKT 340
+T L LK + +L+GG K G + ++ L C FG G
Sbjct: 329 STLAALSGLKIEGQLYLLVGGVGK---GADFTPLAPVLATLPVQLC--CFGVDGHQF--- 380
Query: 341 LVNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
+P A D+ + R +GD ++LSP CASFD+F+NF RG +F
Sbjct: 381 -------MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFA 433
Query: 397 ELA 399
+LA
Sbjct: 434 QLA 436
>gi|417935636|ref|ZP_12578953.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
infantis X]
gi|343402545|gb|EGV15050.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
infantis X]
Length = 450
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 105/377 (27%), Positives = 180/377 (47%), Gaps = 31/377 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LEKGIPVLTEVELAYLI--SEAPIVGITGSNGKTTTTTMIGEVLTAAGQNGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + ++
Sbjct: 151 ASQVA-------QTATDKDTLVMELSSFQL-MGIQEFHPEIAVITNLMPTHIDYHGSFED 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ S+M +L F NQ L + + + N + K+D E
Sbjct: 203 YVAAKWNIQSNMTAADYLVLNF-NQELAKEL-ATKTNATVVPFSTLEKVDGAYLEDGLLY 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F V + + V G HN N A+A ++V L VD E + T+ HR
Sbjct: 261 FRGEKV-----MAADEIGVPGSHNVEN-ALATIAVAKLR-SVDNETIKETLSGFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q V + I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQFVDQ-INGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
+ + ++ G S + + G + ++ DA A +A GD ++LSP
Sbjct: 367 PDITGLKKMVILGQSAERVKRAADKAG--VAYVDATDIADATRKAYELAEEGDVVLLSPA 424
Query: 379 CASFDEFRNFEHRGMVF 395
AS+D + NFE RG +F
Sbjct: 425 NASWDMYANFEVRGDLF 441
>gi|421100598|ref|ZP_15561221.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
borgpetersenii str. 200901122]
gi|410796401|gb|EKR98537.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
borgpetersenii str. 200901122]
Length = 460
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 115/392 (29%), Positives = 182/392 (46%), Gaps = 80/392 (20%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
KI+ VTGT+GKST + + +L + GGNLG P + I+L AV
Sbjct: 103 KIIGVTGTDGKSTTTSLITHLLKKDFSDLKEGGNLGIPFTSFCKEPISL---------AV 153
Query: 104 VEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHKTMKNYALTKCHL-------FSHMVN 155
+E+SSYQ++ + Y VSV LNL PDHLERH+TM+NY K + S +V+
Sbjct: 154 LELSSYQLD--DSYPLHLNVSVFLNLAPDHLERHQTMENYFRAKLKIADLQNPNHSLIVS 211
Query: 156 TKL------------GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203
K+ LL FG +EA+ +E +T+ F
Sbjct: 212 EKIREKILNSTSVRCKLLSFGRAATSEAVLDES--------------SSEIRTSKF---- 253
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
+ +S+ L G HN N A A L+ IG + E++ + I + PHR QI
Sbjct: 254 IYDISRFYLP-----GTHNRENLAAAILASEA--IGGEPESIQARIPLFMGLPHRFQIAG 306
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAKVLNGQESNGFEKLIEPLN 322
QG+++++DSK+TNL + G+ K + ++LGG+ K + + F L +
Sbjct: 307 EK-QGISFINDSKSTNLHSMLAGMSTWKNLDRTCLILGGRPKQEDPKPLYDF--LTRGIG 363
Query: 323 HHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAV------------NHARRMATNG 370
CV+ G + +W+ + N + F+V N+ +A + + +++ +
Sbjct: 364 ---CVVLIGEARS-VWEKGIRNVIGEKLFSVENLNEAFKIFKKWNSISESSESHKISPSS 419
Query: 371 DA----IVLSPGCASFDEFRNFEHRGMVFQEL 398
+ V SP CASFD+++NFE RG F L
Sbjct: 420 ETSISYFVFSPACASFDQYKNFEERGSHFLSL 451
>gi|419494986|ref|ZP_14034706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47461]
gi|421206135|ref|ZP_15663199.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2090008]
gi|421229341|ref|ZP_15686018.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2061376]
gi|421291494|ref|ZP_15742234.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA56348]
gi|421302502|ref|ZP_15753167.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17484]
gi|421311439|ref|ZP_15762046.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA58981]
gi|379597350|gb|EHZ62153.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47461]
gi|395577215|gb|EJG37760.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2090008]
gi|395598326|gb|EJG58531.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2061376]
gi|395894796|gb|EJH05773.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA56348]
gi|395903316|gb|EJH14248.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17484]
gi|395912017|gb|EJH22880.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA58981]
Length = 450
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 106/374 (28%), Positives = 183/374 (48%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + + K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIATDK---NTLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGLFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L VD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-DVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|421289324|ref|ZP_15740076.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA54354]
gi|421304644|ref|ZP_15755300.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA62331]
gi|395890584|gb|EJH01590.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA54354]
gi|395905306|gb|EJH16211.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA62331]
Length = 450
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 106/374 (28%), Positives = 182/374 (48%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVIPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L VD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-DVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +A GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELAIQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|323142004|ref|ZP_08076855.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Phascolarctobacterium succinatutens YIT 12067]
gi|322413536|gb|EFY04404.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Phascolarctobacterium succinatutens YIT 12067]
Length = 466
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 115/378 (30%), Positives = 182/378 (48%), Gaps = 22/378 (5%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q G V+SE++ ++ I A+TGTNGK+T T VG+ML L + VGGN+G L
Sbjct: 99 QRGLEVISEVELGYRLYGGHIA--AITGTNGKTTTTTIVGEMLKRLPEPSAVGGNIGLAL 156
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
S+ S P+ E+SS+Q+E + FCP ++VVLNLTPDHLERH TM+ Y
Sbjct: 157 SKEV-------ESLPQDGWLAAELSSFQLEKVSS-FCPDIAVVLNLTPDHLERHHTMEAY 208
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K ++F ++ +L + + + + L + ++ + +F +
Sbjct: 209 GEAKKNIFRQQGEVQVTVLNYDDPIVRTWGAETKGRLCYFSRKEKLQQGIYMQDGNFIIS 268
Query: 203 AVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G + + + + G HN N V A G GV + + + R+ HR++
Sbjct: 269 WDGKQETVCNISELHLFGGHNEEN--VLAAIACGFFAGVSISDMADVLRNFRSIEHRIEY 326
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V I GV + +DSKATN ++T L K ++L GG K+ E ++E +
Sbjct: 327 VAT-IDGVPYYNDSKATNTDSTIKALEAFKDGHIILLAGGHDKL------TPLEPMMELV 379
Query: 322 NHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 380
+I G + K V G+ A + +DAV+ A MA ++LSP C+
Sbjct: 380 KEKTDALILLGAAKERFNKAAVACGVQNIVLA-DSFEDAVSKAHSMAHKPQVVLLSPACS 438
Query: 381 SFDEFRNFEHRGMVFQEL 398
SFD F+N+ RG F++L
Sbjct: 439 SFDMFKNYPERGNYFKKL 456
>gi|450160942|ref|ZP_21880270.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 66-2A]
gi|449239404|gb|EMC38127.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 66-2A]
Length = 451
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 111/377 (29%), Positives = 190/377 (50%), Gaps = 31/377 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTKEDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q + +I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
+ + +I G S + V G++ V ++ A A + A+ GD ++LSP
Sbjct: 367 PDIKGLKKMIILGESAPRLKHAAVQAGVT--YLNVKDVAQATRIAFQEASPGDVVLLSPA 424
Query: 379 CASFDEFRNFEHRGMVF 395
AS+D ++NFE RG F
Sbjct: 425 NASWDMYKNFEVRGDEF 441
>gi|421344606|ref|ZP_15795009.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-43B1]
gi|395940686|gb|EJH51367.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-43B1]
Length = 406
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 123/422 (29%), Positives = 192/422 (45%), Gaps = 70/422 (16%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + ++A+TG+NG
Sbjct: 27 WNLEWLLNADLVVTNPGIALARPEIQQVLAAGIPVVGDIELFAWHV--DTPVIAITGSNG 84
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 85 KSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLET 135
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQHL 168
+ + LNL+ DH++R++ M++Y K +F H +VN P HL
Sbjct: 136 TSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAHL 194
Query: 169 NEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYH 224
G +F+LA + EA A E + ++GRHN
Sbjct: 195 QVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------LSLVGRHNVA 240
Query: 225 N--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+ +
Sbjct: 241 NVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVAS 295
Query: 283 TCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTL 341
T L LK + +L+GG K G + ++ L C FG G
Sbjct: 296 TLAALSGLKIEGQLYLLVGGVGK---GADFTPLAPVLATLPVQLCC--FGVDGHQF---- 346
Query: 342 VNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
+P A D+ + R +GD ++LSP CASFD+F+NF RG +F +
Sbjct: 347 ------MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQ 400
Query: 398 LA 399
LA
Sbjct: 401 LA 402
>gi|348590588|ref|YP_004875050.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Taylorella
asinigenitalis MCE3]
gi|347974492|gb|AEP37027.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Taylorella
asinigenitalis MCE3]
Length = 481
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 124/397 (31%), Positives = 193/397 (48%), Gaps = 56/397 (14%)
Query: 27 RVMSELDFAAQVI-------PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG 79
+++SE+D I IKI+ +TGTNGK+TV + V M + G++A GN+
Sbjct: 102 KIISEIDLFMHAILEHNKANSTPIKIIGITGTNGKTTVTSMVRLMCEYSGLKAVAAGNI- 160
Query: 80 NPLSEAAFHCIALPSSKPKFQVAV-VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT 138
S +A I+ + K+ A+ +E+SS Q+ ++ S +LN+T DH++ H +
Sbjct: 161 ---SPSALTVISEFEQQNKWPDAIALELSSAQLFYTSELKL-DASTILNITQDHIDWHGS 216
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHL--NEAIKGHRFNLAWI--GAFPGVKIDTEA 194
M+ Y +K +F F Q + +E K + N AWI A P E
Sbjct: 217 MQAYTESKLKIFD-----------FSEQIIASDEQAKEYGLNKAWIYTEALP----QKEN 261
Query: 195 KTASFEVPAVGVVSQLQ-----LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
+ EV + Q + MK+ G HN NA +AA+ L +G+ +E L + +
Sbjct: 262 EIGVNEVNGMKWFCTTQKNLMPVDAMKIRGHHNVLNA-MAAIQ-LCQSVGLPLEPLLAAL 319
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
PHR V RDI GV ++DDSK TN+ AT + D V++LGG+ K GQ
Sbjct: 320 RDYEAQPHRCTYV-RDINGVIFIDDSKGTNVGATVAAI-DGMYRNLVVILGGEGK---GQ 374
Query: 310 ESNGFEKLIEPLNHH-----RCVITFGYSGVLIWKTL-VNNGL---SIPCFAVANMKDAV 360
+ F L E L R ++ G L+ + V +GL S+P V +++ AV
Sbjct: 375 D---FTPLNESLQKRVPDGLRGLVLLGKHKDLLKSSFHVKDGLFANSVPVKEVQSIEQAV 431
Query: 361 NHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
+ A +A GD ++LSP CAS D F+N+ RG+ F +
Sbjct: 432 HEAFALAQAGDLVLLSPACASTDMFKNYHERGVKFAD 468
>gi|153803325|ref|ZP_01957911.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
MZO-3]
gi|254226621|ref|ZP_04920201.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
V51]
gi|254291799|ref|ZP_04962584.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
AM-19226]
gi|384425346|ref|YP_005634704.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
LMA3984-4]
gi|419830839|ref|ZP_14354324.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-1A2]
gi|422918235|ref|ZP_16952549.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-02A1]
gi|422923697|ref|ZP_16956842.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
BJG-01]
gi|423823132|ref|ZP_17717140.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-55C2]
gi|423998656|ref|ZP_17741906.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-02C1]
gi|424020476|ref|ZP_17760257.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-59B1]
gi|424625854|ref|ZP_18064313.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-50A1]
gi|424630341|ref|ZP_18068623.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-51A1]
gi|424634388|ref|ZP_18072486.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-52A1]
gi|424641370|ref|ZP_18079250.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-56A1]
gi|424649439|ref|ZP_18087100.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-57A1]
gi|429884935|ref|ZP_19366540.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
PS15]
gi|124121143|gb|EAY39886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
MZO-3]
gi|125620840|gb|EAZ49194.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
V51]
gi|150422311|gb|EDN14273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
AM-19226]
gi|327484899|gb|AEA79306.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
LMA3984-4]
gi|341635570|gb|EGS60284.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-02A1]
gi|341643728|gb|EGS68005.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
BJG-01]
gi|408011165|gb|EKG48996.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-50A1]
gi|408017244|gb|EKG54760.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-52A1]
gi|408022073|gb|EKG59300.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-56A1]
gi|408031416|gb|EKG68041.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-57A1]
gi|408053413|gb|EKG88427.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-51A1]
gi|408620612|gb|EKK93624.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-1A2]
gi|408634405|gb|EKL06663.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-55C2]
gi|408852202|gb|EKL92043.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-02C1]
gi|408866674|gb|EKM06051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-59B1]
gi|429228267|gb|EKY34195.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
PS15]
Length = 440
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 125/423 (29%), Positives = 193/423 (45%), Gaps = 72/423 (17%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELD-FAAQVIPRSIKILAVTGTN 52
W L WL + + G+A +L +G V+ +++ FA V ++A+TG+N
Sbjct: 61 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV---DTPVIAITGSN 117
Query: 53 GKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME 112
GKSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 118 GKSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLE 168
Query: 113 IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQH 167
+ + LNL+ DH++R++ M++Y K +F H +VN P H
Sbjct: 169 TTSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAH 227
Query: 168 LNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
L G +F+LA + EA A E + ++GRHN
Sbjct: 228 LQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------LSLVGRHNV 273
Query: 224 HN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE 281
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+
Sbjct: 274 ANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVA 328
Query: 282 ATCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKT 340
+T L LK + +L+GG K G + ++ L C FG G
Sbjct: 329 STLAALSGLKIEGQLYLLVGGVGK---GADFTPLAPVLATLPVQLC--CFGVDGHQF--- 380
Query: 341 LVNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
+P A D+ + R +GD ++LSP CASFD+F+NF RG +F
Sbjct: 381 -------MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFA 433
Query: 397 ELA 399
+LA
Sbjct: 434 QLA 436
>gi|229521234|ref|ZP_04410654.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae TM
11079-80]
gi|229341766|gb|EEO06768.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae TM
11079-80]
Length = 467
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 123/422 (29%), Positives = 192/422 (45%), Gaps = 70/422 (16%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + ++A+TG+NG
Sbjct: 88 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV--DTPVIAITGSNG 145
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 146 KSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLET 196
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQHL 168
+ + LNL+ DH++R++ M++Y K +F H +VN P HL
Sbjct: 197 TSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAHL 255
Query: 169 NEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYH 224
G +F+LA + EA A E + ++GRHN
Sbjct: 256 QVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------LSLVGRHNVA 301
Query: 225 N--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+ +
Sbjct: 302 NVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVAS 356
Query: 283 TCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTL 341
T L LK + +L+GG K G + ++ L C FG G
Sbjct: 357 TLAALSGLKIEGQLYLLVGGVGK---GADFTPLAPVLATLPVQLC--CFGVDGHQF---- 407
Query: 342 VNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
+P A D+ + R +GD ++LSP CASFD+F+NF RG +F +
Sbjct: 408 ------MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQ 461
Query: 398 LA 399
LA
Sbjct: 462 LA 463
>gi|419834523|ref|ZP_14357978.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-61A2]
gi|423857096|ref|ZP_17720945.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-59A1]
gi|423884370|ref|ZP_17724537.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-60A1]
gi|424017556|ref|ZP_17757382.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-55B2]
gi|424637466|ref|ZP_18075472.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-55A1]
gi|443528361|ref|ZP_21094398.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-78A1]
gi|408022586|gb|EKG59791.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-55A1]
gi|408639700|gb|EKL11507.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-59A1]
gi|408640020|gb|EKL11821.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-60A1]
gi|408649345|gb|EKL20662.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-61A2]
gi|408859063|gb|EKL98732.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-55B2]
gi|443453278|gb|ELT17108.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-78A1]
Length = 406
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 123/422 (29%), Positives = 192/422 (45%), Gaps = 70/422 (16%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + ++A+TG+NG
Sbjct: 27 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV--DTPVIAITGSNG 84
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 85 KSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLET 135
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQHL 168
+ + LNL+ DH++R++ M++Y K +F H +VN P HL
Sbjct: 136 TSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAHL 194
Query: 169 NEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYH 224
G +F+LA + EA A E + ++GRHN
Sbjct: 195 QVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------LSLVGRHNVA 240
Query: 225 N--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+ +
Sbjct: 241 NVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVAS 295
Query: 283 TCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTL 341
T L LK + +L+GG K G + ++ L C FG G
Sbjct: 296 TLAALSGLKIEGQLYLLVGGVGK---GADFTPLAPVLATLPVQLCC--FGVDGHQF---- 346
Query: 342 VNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
+P A D+ + R +GD ++LSP CASFD+F+NF RG +F +
Sbjct: 347 ------MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQ 400
Query: 398 LA 399
LA
Sbjct: 401 LA 402
>gi|419838094|ref|ZP_14361532.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-46B1]
gi|423736055|ref|ZP_17709246.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-41B1]
gi|424010388|ref|ZP_17753322.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-44C1]
gi|408629138|gb|EKL01848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-41B1]
gi|408856642|gb|EKL96337.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-46B1]
gi|408863131|gb|EKM02624.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-44C1]
Length = 440
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 123/422 (29%), Positives = 192/422 (45%), Gaps = 70/422 (16%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + ++A+TG+NG
Sbjct: 61 WNLEWLLNADLVVTNPGIALARPEIQQVLAAGIPVVGDIELFAWHV--DTPVIAITGSNG 118
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 119 KSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLET 169
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQHL 168
+ + LNL+ DH++R++ M++Y K +F H +VN P HL
Sbjct: 170 TSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAHL 228
Query: 169 NEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYH 224
G +F+LA + EA A E + ++GRHN
Sbjct: 229 QVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------LSLVGRHNVA 274
Query: 225 N--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+ +
Sbjct: 275 NVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVAS 329
Query: 283 TCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTL 341
T L LK + +L+GG K G + ++ L C FG G
Sbjct: 330 TLAALSGLKIEGQLYLLVGGVGK---GADFTPLAPVLATLPVQLC--CFGVDGHQF---- 380
Query: 342 VNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
+P A D+ + R +GD ++LSP CASFD+F+NF RG +F +
Sbjct: 381 ------MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQ 434
Query: 398 LA 399
LA
Sbjct: 435 LA 436
>gi|169833121|ref|YP_001694158.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae Hungary19A-6]
gi|226722947|sp|B1IAM3.1|MURD_STRPI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|168995623|gb|ACA36235.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae Hungary19A-6]
Length = 450
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 106/374 (28%), Positives = 182/374 (48%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVIPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L VD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-DVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +A GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELAIQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>gi|421355087|ref|ZP_15805419.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE-45]
gi|395954212|gb|EJH64825.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE-45]
Length = 440
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 123/422 (29%), Positives = 192/422 (45%), Gaps = 70/422 (16%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + ++A+TG+NG
Sbjct: 61 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV--DTPVIAITGSNG 118
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 119 KSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLET 169
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQHL 168
+ + LNL+ DH++R++ M++Y K +F H +VN P HL
Sbjct: 170 TSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAHL 228
Query: 169 NEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYH 224
G +F+LA + EA A E + ++GRHN
Sbjct: 229 QVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------LSLVGRHNVA 274
Query: 225 N--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+ +
Sbjct: 275 NVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVAS 329
Query: 283 TCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTL 341
T L LK + +L+GG K G + ++ L C FG G
Sbjct: 330 TLAALSGLKIEGQLYLLVGGVGK---GADFTPLAPVLATLPVQLC--CFGVDGHQF---- 380
Query: 342 VNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
+P A D+ + R +GD ++LSP CASFD+F+NF RG +F +
Sbjct: 381 ------MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQ 434
Query: 398 LA 399
LA
Sbjct: 435 LA 436
>gi|374385849|ref|ZP_09643351.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Odoribacter laneus
YIT 12061]
gi|373224794|gb|EHP47130.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Odoribacter laneus
YIT 12061]
Length = 450
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 105/392 (26%), Positives = 195/392 (49%), Gaps = 37/392 (9%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ L G V+SE++ A + ++ +TG+NGK+T + +L G++A + GN
Sbjct: 78 IKALQAKGIEVISEIELAGR--HSDAIMICITGSNGKTTTTLLIHHILVQAGMDAGLAGN 135
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G H +A ++ + VVE+SS+Q++ + F ++V+ N+TPDHL+R+
Sbjct: 136 VG--------HSLAAQVAENAHPLYVVELSSFQLDGMFR-FQADIAVLTNVTPDHLDRYD 186
Query: 138 -TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI----GAFPGVKIDT 192
+NY +K + ++M L + + + + + + G + + G P ++
Sbjct: 187 YKFENYVNSKFRILNNMGKEGLFIYGYDCEVVRQRVIGQKLLPQAVPFTYGGEPDLQQAG 246
Query: 193 EAKTASFEVPAVGV-----VSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNS 247
A E + V V ++ +++ + GRHN +NA A L+ + GVD A+ +
Sbjct: 247 GTACAYMEGDTIVVRLDEKVFRMDKNDVSIKGRHNVYNAMAAILACM--RAGVDPGAIAA 304
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLN 307
++ HR++ V + GVT+++DSKATN+++ L D H V + GG K
Sbjct: 305 GLKSFPQVEHRLETVAV-VAGVTYINDSKATNVDSAWYAL-DSMTHPVVWIAGGTDK--- 359
Query: 308 GQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSI-PCFAVANMKDAVNHARR 365
N + L E + + ++ G + L+ N I P ++++A+ ++
Sbjct: 360 ---GNDYTVLYELVKQKVKALVCMGVDN----RKLIENFSGICPVADTHSLEEALAAVQK 412
Query: 366 MATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
A GD ++LSP CASFD F+N+E RG +F+E
Sbjct: 413 YACEGDTVLLSPCCASFDLFKNYEQRGELFKE 444
>gi|417818160|ref|ZP_12464788.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HCUF01]
gi|419827348|ref|ZP_14350847.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1033(6)]
gi|421322153|ref|ZP_15772705.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1038(11)]
gi|421329609|ref|ZP_15780119.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1042(15)]
gi|421337107|ref|ZP_15787568.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1048(21)]
gi|421340535|ref|ZP_15790967.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-20A2]
gi|421348325|ref|ZP_15798702.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-46A1]
gi|423161095|ref|ZP_17148033.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-33A2]
gi|423165923|ref|ZP_17152643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-48B2]
gi|424602633|ref|ZP_18041772.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1047(20)]
gi|424622963|ref|ZP_18061466.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-47A1]
gi|424657513|ref|ZP_18094797.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-81A2]
gi|340035756|gb|EGQ96734.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HCUF01]
gi|356443588|gb|EHH96407.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-33A2]
gi|356449647|gb|EHI02390.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-48B2]
gi|395917893|gb|EJH28720.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1038(11)]
gi|395928143|gb|EJH38906.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1042(15)]
gi|395932206|gb|EJH42950.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1048(21)]
gi|395939818|gb|EJH50500.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-20A2]
gi|395942904|gb|EJH53580.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-46A1]
gi|395970188|gb|EJH79986.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-47A1]
gi|395974677|gb|EJH84196.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1047(20)]
gi|408051931|gb|EKG87000.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-81A2]
gi|408608138|gb|EKK81541.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1033(6)]
Length = 406
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 123/422 (29%), Positives = 192/422 (45%), Gaps = 70/422 (16%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + ++A+TG+NG
Sbjct: 27 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV--DTPVIAITGSNG 84
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 85 KSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLET 135
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQHL 168
+ + LNL+ DH++R++ M++Y K +F H +VN P HL
Sbjct: 136 TSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAHL 194
Query: 169 NEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYH 224
G +F+LA + EA A E + ++GRHN
Sbjct: 195 QVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------LSLVGRHNVA 240
Query: 225 N--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+ +
Sbjct: 241 NVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVAS 295
Query: 283 TCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTL 341
T L LK + +L+GG K G + ++ L C FG G
Sbjct: 296 TLAALSGLKIEGQLYLLVGGVGK---GADFTPLAPVLATLPVQLCC--FGVDGHQF---- 346
Query: 342 VNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
+P A D+ + R +GD ++LSP CASFD+F+NF RG +F +
Sbjct: 347 ------MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQ 400
Query: 398 LA 399
LA
Sbjct: 401 LA 402
>gi|150009088|ref|YP_001303831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Parabacteroides
distasonis ATCC 8503]
gi|149937512|gb|ABR44209.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Parabacteroides
distasonis ATCC 8503]
Length = 445
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 111/406 (27%), Positives = 191/406 (47%), Gaps = 65/406 (16%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G ++SE++FA + K++ +TG+NGK+T +L G++
Sbjct: 76 KAPIIQLLKKQGTPIISEIEFAGRYTDS--KMICITGSNGKTTTTMLTYHILKEAGVDVG 133
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+GN L AL ++ V V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 134 LAGNVGNSL--------ALQVAEDPHAVYVIELSSFQLD--NMYDFKADIAIILNITPDH 183
Query: 133 LERHK-TMKNYALTKCHLFSHMVNT---------------------KLGLLPFGNQHLNE 170
L+R+ M+NY K + + + L PF H N
Sbjct: 184 LDRYNYEMQNYVDAKFRILQNQTKDDAFIFWNDDPIIAREIAKRHPEATLYPFAETHEN- 242
Query: 171 AIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAA 230
+KG+ N V I+T T + E + + G HN +N+ +
Sbjct: 243 GMKGYTEN-------NQVVIETANGTFTMEQDLLALT-----------GTHNLYNSLASG 284
Query: 231 LSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL 290
++ +DI E + +++ HR++ V R ++GV +++DSKATN+ + L +
Sbjct: 285 IASKIVDIHD--EKIRASLSDFTGVEHRLEKVLR-VRGVDYINDSKATNVNSCWYALQSM 341
Query: 291 KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPC 350
V++LGG K G + + E+L+ H +I G + +G
Sbjct: 342 TT-PVVLILGGTDK---GNDYSEIEELVSKKVH--SLIFMGVDNTKLHAFF--DGKVANI 393
Query: 351 FAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
+M++AV A +MA GD ++LSP CASFD F+++E RG F+
Sbjct: 394 EDARSMEEAVAKAYKMAHKGDTVLLSPCCASFDLFKSYEDRGDQFK 439
>gi|449928887|ref|ZP_21801394.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 3SN1]
gi|449164959|gb|EMB67993.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 3SN1]
Length = 451
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 113/380 (29%), Positives = 189/380 (49%), Gaps = 37/380 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTEKDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q + +I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR---RMATNGDAIVL 375
+ + +I G S + V G++ N KD R + A+ GD I+L
Sbjct: 367 PDIKGLKKMIILGESAPRLKHAAVQAGVT-----YLNAKDVAQATRIAFQEASPGDVILL 421
Query: 376 SPGCASFDEFRNFEHRGMVF 395
SP AS+D ++NFE RG F
Sbjct: 422 SPANASWDMYKNFEVRGDEF 441
>gi|427408252|ref|ZP_18898454.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Sphingobium
yanoikuyae ATCC 51230]
gi|425713591|gb|EKU76604.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Sphingobium
yanoikuyae ATCC 51230]
Length = 437
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 114/362 (31%), Positives = 167/362 (46%), Gaps = 52/362 (14%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ--- 100
K++ +TGTNGKST + ++ G A +GGN+G P+ + +P
Sbjct: 110 KVVGITGTNGKSTTTALIHHIIEQAGFPARMGGNIGLPI-------LGQEPLEPNLHGMG 162
Query: 101 VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160
V V+E+SSYQ+++ + C V+V+LN+TPDHL+R+ Y +K LF+ + +
Sbjct: 163 VYVLELSSYQIDLTHSLDC-DVAVLLNITPDHLDRYNGFAGYVASKARLFAMQSADHVAV 221
Query: 161 LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGR 220
+ ++ P I A EV A + QL + G
Sbjct: 222 IATEDE-------------------PSRGIAASAPAQLREVKAADIDPDAQLGWPSLQGP 262
Query: 221 HNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
HN NAAVA +G +G+D + + + + PHRMQ V GV +V+DSKATN
Sbjct: 263 HNAQNAAVAI--AVGRALGIDDATIMAALASYASLPHRMQAVGTH-NGVLYVNDSKATNA 319
Query: 281 EATCT--GLMDLKGHKCVI--LLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVL 336
+T G + K I +LGG AK N E + I T G +G +
Sbjct: 320 ASTAPALGAWPARDGKPRIHWILGGVAKSDNLDECAPYYGNIA------HAYTIGEAGHM 373
Query: 337 IWKTLVNNGLSIPCFAVAN---MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
L P AV + + AV A R+A GD ++LSP CASFD+FR+FE RG
Sbjct: 374 FADLLR------PHMAVDDSEMLSAAVRRAARIAQPGDVVLLSPACASFDQFRDFEARGD 427
Query: 394 VF 395
F
Sbjct: 428 AF 429
>gi|229528610|ref|ZP_04418000.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
12129(1)]
gi|229332384|gb|EEN97870.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
12129(1)]
Length = 467
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 113/371 (30%), Positives = 172/371 (46%), Gaps = 60/371 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G + N G++A VGGN+G P AL P ++ V+
Sbjct: 137 VIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVL 187
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLG 159
E+SS+Q+E + + LNL+ DH++R++ M++Y K +F H +VN
Sbjct: 188 ELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNAYDTQ 246
Query: 160 LLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM 215
P HL G +F+LA + EA A E +
Sbjct: 247 TFPDHAAHLQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------L 292
Query: 216 KVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
++GRHN N +A L G++ + ++AL S + HR Q+V D G+ WV+
Sbjct: 293 SLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVN 347
Query: 274 DSKATNLEATCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGY 332
DSKATN+ +T L LK + +L+GG K G + ++ L C FG
Sbjct: 348 DSKATNVASTLAALSGLKIEGQLYLLVGGVGK---GADFTPLAPVLATLPVQLCC--FGV 402
Query: 333 SGVLIWKTLVNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNF 388
G +P A D+ + R +GD ++LSP CASFD+F+NF
Sbjct: 403 DGHQF----------MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNF 452
Query: 389 EHRGMVFQELA 399
RG +F +LA
Sbjct: 453 MARGDIFAQLA 463
>gi|313893665|ref|ZP_07827233.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
oral taxon 158 str. F0412]
gi|313441809|gb|EFR60233.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
oral taxon 158 str. F0412]
Length = 456
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 124/379 (32%), Positives = 190/379 (50%), Gaps = 33/379 (8%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+SE++ A +V I+AVTGTNGK+T T + ++L G VGGN+G+ LSE
Sbjct: 92 GIDVVSEVELAYEV--SKSPIVAVTGTNGKTTTTTLLTKVLEGSGKPVRVGGNIGDSLSE 149
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
A+ S P V E+SSYQ+E K+F P +++LN+TPDHL RHKTM+NY
Sbjct: 150 VAY-------SMPAGGFLVAELSSYQLETI-KHFRPIGAIMLNITPDHLARHKTMENYIA 201
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV--- 201
K +F + + + +L + + A HR + ++ A A+ +
Sbjct: 202 AKERIFENQLKSDYLVLNIDDPIV--ADMEHRAPSHILQISQKQTVENGAYYANGQCYVV 259
Query: 202 ---PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
A V+ +H + G HN N + + L +GV V ++ I HR
Sbjct: 260 KNGVATAVIGDKDIH---IPGSHNIEN--ILTVIALTYALGVPVVEIHRIISEFHGVEHR 314
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL-GGQAKVLNGQESNGFEKL 317
++ V + I G+T+ +DSKATN+++ L K VILL GG K+ +E F +L
Sbjct: 315 LERV-KTIDGITFYNDSKATNVDSVVKALESFD--KPVILLAGGHDKMTPLEE---FMQL 368
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
++ + VI G + G+ P + +MKDAV ++A +GD ++LSP
Sbjct: 369 VKVKT--KAVIFMGEAAERFEAAAKEAGVE-PIYRALSMKDAVEQGYKLAESGDIVLLSP 425
Query: 378 GCASFDEFRNFEHRGMVFQ 396
CASFD + FE RG F+
Sbjct: 426 ACASFDWYSCFEERGDDFK 444
>gi|297581030|ref|ZP_06942955.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae
RC385]
gi|297534856|gb|EFH73692.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae
RC385]
Length = 444
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 125/423 (29%), Positives = 192/423 (45%), Gaps = 72/423 (17%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELD-FAAQVIPRSIKILAVTGTN 52
W L WL + + G+A +L +G V+ +++ FA V ++A+TG+N
Sbjct: 65 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV---DTPVIAITGSN 121
Query: 53 GKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME 112
GKSTV G + N G++A VGGN+G P AL P + V+E+SS+Q+E
Sbjct: 122 GKSTVTDLSGMLANAAGVKAAVGGNIGVP---------ALDLISPDVDLYVLELSSFQLE 172
Query: 113 IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQH 167
+ + LNL+ DH++R++ M++Y K +F H +VN P H
Sbjct: 173 TTSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAH 231
Query: 168 LNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
L G +F+LA + EA A E + ++GRHN
Sbjct: 232 LQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------LSLVGRHNV 277
Query: 224 HN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE 281
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+
Sbjct: 278 ANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVA 332
Query: 282 ATCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKT 340
+T L LK + +L+GG K G + ++ L C FG G
Sbjct: 333 STLAALSGLKIEGQLYLLVGGVGK---GADFTPLAPVLATLPVQLCC--FGVDGHQF--- 384
Query: 341 LVNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
+P A D+ + R +GD ++LSP CASFD+F+NF RG +F
Sbjct: 385 -------MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFA 437
Query: 397 ELA 399
+LA
Sbjct: 438 QLA 440
>gi|227082526|ref|YP_002811077.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
cholerae M66-2]
gi|229507535|ref|ZP_04397040.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae BX
330286]
gi|229512269|ref|ZP_04401748.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
B33]
gi|229519405|ref|ZP_04408848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
RC9]
gi|229607041|ref|YP_002877689.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
cholerae MJ-1236]
gi|9656976|gb|AAF95546.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|227010414|gb|ACP06626.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
M66-2]
gi|229344094|gb|EEO09069.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
RC9]
gi|229352234|gb|EEO17175.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
B33]
gi|229355040|gb|EEO19961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae BX
330286]
gi|229369696|gb|ACQ60119.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
MJ-1236]
Length = 467
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 113/371 (30%), Positives = 172/371 (46%), Gaps = 60/371 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G + N G++A VGGN+G P AL P ++ V+
Sbjct: 137 VIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVL 187
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLG 159
E+SS+Q+E + + LNL+ DH++R++ M++Y K +F H +VN
Sbjct: 188 ELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQ 246
Query: 160 LLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM 215
P HL G +F+LA + EA A E +
Sbjct: 247 TFPDHAAHLQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------L 292
Query: 216 KVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
++GRHN N +A L G++ + ++AL S + HR Q+V D G+ WV+
Sbjct: 293 SLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVN 347
Query: 274 DSKATNLEATCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGY 332
DSKATN+ +T L LK + +L+GG K G + ++ L C FG
Sbjct: 348 DSKATNVASTLAALSGLKIEGQLYLLVGGVGK---GADFTPLAPVLATLPVQLC--CFGV 402
Query: 333 SGVLIWKTLVNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNF 388
G +P A D+ + R +GD ++LSP CASFD+F+NF
Sbjct: 403 DGHQF----------MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNF 452
Query: 389 EHRGMVFQELA 399
RG +F +LA
Sbjct: 453 MARGDIFAQLA 463
>gi|312622927|ref|YP_004024540.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase
[Caldicellulosiruptor kronotskyensis 2002]
gi|312203394|gb|ADQ46721.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
[Caldicellulosiruptor kronotskyensis 2002]
Length = 458
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 114/380 (30%), Positives = 189/380 (49%), Gaps = 27/380 (7%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V+ E++ A + +S I+A+TGTNGK+T T VG++L + V GN+G P
Sbjct: 91 KKGIEVIGEIELAYRFC-KSKNIVAITGTNGKTTTTTLVGEILKKQYEDVVVCGNIGLPF 149
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
I + + + V+E+SS+Q+E KYF P V +LN+TPDHL RH TM+NY
Sbjct: 150 -------IDTIETSSEDTIFVLEISSFQLETI-KYFKPKVGCILNITPDHLNRHLTMENY 201
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPG-----VKIDTEAKTA 197
K +F ++ +L + N + I + N+ V ++ +
Sbjct: 202 TKAKMRIFENIDEMGYTVLNYDNNITRDLIGLAKGNVIVFSKTKTQFENVVFVENDVIYF 261
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+FE V+ + ++ + G+HN NA +AA+S L G++ + + ++ R H
Sbjct: 262 TFEGKTQEVMKKDEIF---IPGQHNLENA-LAAISCT-LPFGIEKDTIEQVLKTFRGVEH 316
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R++ V +I G+ + +DSK TN +A L + + +++ GG K G+ F L
Sbjct: 317 RIEFVA-EINGIKFYNDSKGTNTDAAEKALNAFE-NPIILIAGGYDK---GESFEKFASL 371
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
+ + V G + I L G V+ +K+AV + A NGD ++LSP
Sbjct: 372 V--AKKVKKVFLLGQTKQKIASELEKIGYK-NFELVSTLKEAVRKSFECAQNGDIVLLSP 428
Query: 378 GCASFDEFRNFEHRGMVFQE 397
CAS+D F N+E RG +F+E
Sbjct: 429 ACASWDMFENYEQRGRMFKE 448
>gi|120555365|ref|YP_959716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinobacter
aquaeolei VT8]
gi|158513048|sp|A1U3G0.1|MURD_MARAV RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|120325214|gb|ABM19529.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinobacter
aquaeolei VT8]
Length = 446
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 111/358 (31%), Positives = 172/358 (48%), Gaps = 38/358 (10%)
Query: 49 TGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSS 108
TG+NGK+TV T VG+M G VGGN+G P AL + + V+E+SS
Sbjct: 115 TGSNGKTTVTTLVGEMARAAGRNVQVGGNIGTP---------ALDLLEQGADLYVLELSS 165
Query: 109 YQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL-----LPF 163
+Q+E + + VLN++ DH++R+ Y K ++ N + L P
Sbjct: 166 FQLET-TEELGALAATVLNVSDDHMDRYPDKMAYFQAKQRIYRGCKNAIVNLDDALSTPM 224
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
L G FN F + D E ++ + + + S+LQL MGRHN
Sbjct: 225 ARDTLRFLCFG--FNRVNPETF-STRDDDEGTWITWGLENLLLASELQL-----MGRHNI 276
Query: 224 HNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEAT 283
N V A LG G+ +E + R PHR + V R++ GV +++DSK TN+ AT
Sbjct: 277 SN--VMAALALGYAAGLAMEPMLEVARRFRGLPHRCESV-RNLDGVDYINDSKGTNVGAT 333
Query: 284 CTGLMDL--KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKT 340
+ L + K +++ GG K + F+ L EP+ R ++ G I +
Sbjct: 334 VAAIESLVPESGKVILIAGGDGKGAD------FQPLAEPVAACCRALVLIGRDAGKISRA 387
Query: 341 LVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
+ G S+P ++++AV+ AR+ A GD ++LSP CASFD FR++ RG F+ L
Sbjct: 388 V---GASVPQHRATSLQEAVSLARQAAEPGDRVLLSPACASFDMFRDYNDRGEQFRTL 442
>gi|423334585|ref|ZP_17312364.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides
distasonis CL03T12C09]
gi|409225776|gb|EKN18694.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides
distasonis CL03T12C09]
Length = 441
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 111/406 (27%), Positives = 191/406 (47%), Gaps = 65/406 (16%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G ++SE++FA + K++ +TG+NGK+T +L G++
Sbjct: 72 KAPIIQLLKKQGTPIISEIEFAGRYTDS--KMICITGSNGKTTTTMLTYHILKEAGVDVG 129
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+GN L AL ++ V V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 130 LAGNVGNSL--------ALQVAEDPHAVYVIELSSFQLD--NMYDFKADIAIILNITPDH 179
Query: 133 LERHK-TMKNYALTKCHLFSHMVNT---------------------KLGLLPFGNQHLNE 170
L+R+ M+NY K + + + L PF H N
Sbjct: 180 LDRYNYEMQNYVDAKFRILQNQTKDDAFIFWNDDPIIAREIAKRHPEATLYPFAETHEN- 238
Query: 171 AIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAA 230
+KG+ N V I+T T + E + + G HN +N+ +
Sbjct: 239 GMKGYTEN-------NQVVIETANGTFTMEQDLLALT-----------GTHNLYNSLASG 280
Query: 231 LSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL 290
++ +DI E + +++ HR++ V R ++GV +++DSKATN+ + L +
Sbjct: 281 IASKIVDIHD--EKIRASLSDFTGVEHRLEKVLR-VRGVDYINDSKATNVNSCWYALQSM 337
Query: 291 KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPC 350
V++LGG K G + + E+L+ H +I G + +G
Sbjct: 338 TT-PVVLILGGTDK---GNDYSEIEELVSKKVH--SLIFMGVDNTKLHAFF--DGKVANI 389
Query: 351 FAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
+M++AV A +MA GD ++LSP CASFD F+++E RG F+
Sbjct: 390 EDARSMEEAVAKAYKMAHKGDTVLLSPCCASFDLFKSYEDRGDQFK 435
>gi|189502202|ref|YP_001957919.1| hypothetical protein Aasi_0816 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497643|gb|ACE06190.1| hypothetical protein Aasi_0816 [Candidatus Amoebophilus asiaticus
5a2]
Length = 450
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 103/387 (26%), Positives = 187/387 (48%), Gaps = 34/387 (8%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ L ++ ++ E++FA++ S+ +A+TG+NGKST +L G+ + GN
Sbjct: 79 IQALQEASIPIIDEVEFASRYTKASL--IAITGSNGKSTTTHLAYHLLKAGGLNVGIAGN 136
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G + + V+E+SS+Q+E + F ++ +LN+TPDHL+R+
Sbjct: 137 IGTSFARKVL--------LEEHNYYVLELSSFQLE-HLQTFKADIACILNITPDHLDRYD 187
Query: 138 T-MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT 196
+ NY K + +M+ + + ++ E + NL + +P +
Sbjct: 188 NQLNNYIAAKFRILRNMIKEGYFIYNQDDTNIREYLVKQTTNLPQL--YPISLTQSTHHG 245
Query: 197 ASFEVPAVGVVS-----QLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTI 249
A E + V QL + ++G+HN +N AA++ S+LGL ++ L +
Sbjct: 246 AYVENNHLHFVGDNYNFQLPTQTLPLLGKHNIYNTMAAISIASLLGLSYASILDGLRT-- 303
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
+ PHRM+ + ++ V++ +DSKATN+E+ L + + GG K G
Sbjct: 304 --FKGLPHRMEWI-ANVNQVSFYNDSKATNVESAAVALESFTS-PIIWIAGGYDK---GN 356
Query: 310 ESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN 369
+ N + +++ N + +I G I K + +IP + M++AV+ A +A
Sbjct: 357 DYNVLKPIVK--NSVKALICLGKDNQTICKAFKES--NIPIYETQVMQEAVSLAYTLAKP 412
Query: 370 GDAIVLSPGCASFDEFRNFEHRGMVFQ 396
D ++LSP CASFD F+NFE RG F+
Sbjct: 413 QDIVLLSPACASFDLFKNFEDRGEQFR 439
>gi|167614184|gb|ABZ89690.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
aphidicola]
Length = 440
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 109/363 (30%), Positives = 174/363 (47%), Gaps = 42/363 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+++TGTNGKSTV T V ++ G + F+GGN+G P+ E K + ++
Sbjct: 108 IISITGTNGKSTVATMVKKIAEKSGYKVFLGGNIGFPVLEML---------NQKANLYIL 158
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSH-----MVNTKL 158
E+SS+Q+E ++VVLN+T DHL+R+ + + Y K +++ + K
Sbjct: 159 ELSSFQLETTFS-LKSKIAVVLNITEDHLDRYPEGFEQYKKIKLSIYNQAEICLIKLKKG 217
Query: 159 GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
G PF Q ++ I I+ E + A V L NM +
Sbjct: 218 GKKPFDTQF-------KKYISFGICQNNNYHINYEKEKAILYCKNKKV---LDTSNMFLN 267
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HNY NA ++ + ++ A+N T++ PHR Q VH + ++W++DSK+T
Sbjct: 268 GYHNYENALISLAISDAMKFNREI-AIN-TLKQFSGLPHRFQTVHIN-NNISWINDSKST 324
Query: 279 NLEATCTGLMDLKGHKCV-ILLGGQAKVLNGQESNGFEKLIEPLNHHRCVI-TFGYSGVL 336
N+++T L +L + +LLGG K S+ F L E + I FG G+
Sbjct: 325 NVDSTKVALQNLNIKGTIWLLLGGDGK------SSNFNILKEYFEKLKIKIYCFGKDGLS 378
Query: 337 IWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
+ K + V +K A+ + GD ++LSPGC+S D+F NFE RG +F
Sbjct: 379 LSKLCKKKSV-----YVETLKQAIILISKKIQPGDVVLLSPGCSSKDQFSNFEERGNLFI 433
Query: 397 ELA 399
EL+
Sbjct: 434 ELS 436
>gi|399032392|ref|ZP_10731861.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacterium sp.
CF136]
gi|398069244|gb|EJL60611.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacterium sp.
CF136]
Length = 443
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/381 (27%), Positives = 190/381 (49%), Gaps = 27/381 (7%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L+++G +V+SE++FA + ++ I +TG+NGK+T +L G+ +GGN+G
Sbjct: 81 LIEAGVKVISEIEFA-KPFTEALTI-GITGSNGKTTTTMLTYHLLKSAGLNVGMGGNIG- 137
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TM 139
A ++ K+ V+E+SS+Q++ Y P ++++ N++PDHL+R++
Sbjct: 138 -------KSFAWQVAENKYDAYVLELSSFQLDGIIDY-KPDIAIITNISPDHLDRYEYKY 189
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
+ Y +K + + + + +Q + E ++ H A + F K+ E + +
Sbjct: 190 QKYIDSKFRITMNQTESDYLIYDADDQAITEWLQ-HNTTKAKLIPFSLTKVFNEGASINN 248
Query: 200 EVPAVGVVSQ---LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
+ + + ++ + + G+HN NA +AA SV L + + + ++ +
Sbjct: 249 NKMEIQINQEEFTMETEYIALEGKHNMKNA-MAASSVAKL-MQIRNATIRESLSNFQGVE 306
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK 316
HR++ V + IQ V +++DSKATN+ A L D V ++GG K G + N
Sbjct: 307 HRLEKVLK-IQNVQYINDSKATNVNAAFFAL-DSMNVPTVWIVGGVDK---GNDYNELMS 361
Query: 317 LIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLS 376
L+ + +I G I + N + V NM DAV A+R+ GDA++LS
Sbjct: 362 LVRE--KVKAIICLGIDNRKIIEAFGN--VVDIMVEVNNMSDAVKTAQRLTEKGDAVLLS 417
Query: 377 PGCASFDEFRNFEHRGMVFQE 397
P CASFD F N+E RG F++
Sbjct: 418 PACASFDLFENYEDRGKQFKQ 438
>gi|160891418|ref|ZP_02072421.1| hypothetical protein BACUNI_03868 [Bacteroides uniformis ATCC 8492]
gi|317478449|ref|ZP_07937609.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
4_1_36]
gi|156858825|gb|EDO52256.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
uniformis ATCC 8492]
gi|316905338|gb|EFV27132.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
4_1_36]
Length = 443
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 107/391 (27%), Positives = 189/391 (48%), Gaps = 49/391 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+GN
Sbjct: 81 LKEKGTPIISEIEFAGRYT--DAKMVCITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGN 138
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL + + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 139 SL--------ALQVATEQHDYYVIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 188
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID-----TE 193
M+ Y K + + + + + + H A + F VK D E
Sbjct: 189 MQKYVDAKFRITQNQTPEDAFIFWNDDPIIKRELDKHGLR-AHLYPFAAVKEDGAIAYVE 247
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
P + ++ + + G HN +N+ A +S L G+ E + + +
Sbjct: 248 DGEVEINEP---IAFNMEQEELALHGTHNLYNSLAAGISA-NL-AGIRKEYIRKALSDFK 302
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
HR++ V ++GV++++DSKATN+ + L + G K V++LGG+ K N
Sbjct: 303 GVEHRLEKVAT-VRGVSFINDSKATNVNSCWYALQSMTG-KTVLILGGKDK------GND 354
Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVN-------NGLSIPCFAV-ANMKDAVNHARR 365
+ + IE L +C L++ L N + L +P V M+DAV A +
Sbjct: 355 YTE-IEDLVREKC-------SALVYLGLHNEKLHAFFDRLGLPVADVQTGMQDAVEAAFK 406
Query: 366 MATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
+A G+ ++LSP CASFD F+++E RG F+
Sbjct: 407 LAKKGETVLLSPCCASFDLFKSYEDRGNQFK 437
>gi|189220257|ref|YP_001940897.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Methylacidiphilum
infernorum V4]
gi|189187115|gb|ACD84300.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Methylacidiphilum
infernorum V4]
Length = 442
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 174/376 (46%), Gaps = 41/376 (10%)
Query: 26 KRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85
++++S+ D P K + VTG+ GKST + + +L G +A++GGN+G P
Sbjct: 98 EKIVSQADIFLSFWPG--KTVGVTGSKGKSTTSSLIYHLLKEGGFKAYLGGNIGIP---- 151
Query: 86 AFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFC---PTVSVVLNLTPDHLERHKTMKNY 142
FH + K +AV+E+SSYQ+E +C P +++ LNL +HL H + + Y
Sbjct: 152 PFHLLPFADEK---AIAVLELSSYQLE-----YCKHSPAIALWLNLFHEHLNYHGSFEAY 203
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
A K H+ + G+Q L + PG+ + E K
Sbjct: 204 AQAKSHIGRFQSPKDYFIYDPGDQALELFLLSQE-------KMPGIPLPVEGKGR----- 251
Query: 203 AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
SQ+ L + + GRHN NA AA + L +G+ EA++ + R PHR++ V
Sbjct: 252 -----SQVDLSRLGIPGRHNKKNALFAA--RVALLLGMPAEAISEALSSFRGLPHRLEYV 304
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322
+ G+++ +DS +T EAT G+ + + +I +GGQ + G + F + +
Sbjct: 305 -ATVGGISYYNDSISTVPEATLAGIEAIPSVRTLI-VGGQDR---GVDLGLFCARLCTVQ 359
Query: 323 HHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASF 382
+I +G I L G F V ++++AV A R G + + SP S+
Sbjct: 360 ELETLILLPETGWRIGFLLKEMGFKKNLFLVKSLEEAVELAGRYTPKGYSCLFSPAAPSY 419
Query: 383 DEFRNFEHRGMVFQEL 398
+ NFE RG F+ L
Sbjct: 420 HLYLNFEKRGEHFKSL 435
>gi|450107170|ref|ZP_21860910.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SF14]
gi|449222338|gb|EMC22067.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SF14]
Length = 451
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 113/380 (29%), Positives = 189/380 (49%), Gaps = 37/380 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++VV NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVVTNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTKEDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q + +I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR---RMATNGDAIVL 375
+ + +I G S + V G++ N KD R + A+ GD ++L
Sbjct: 367 PDIKGLKKMIILGESAPRLKHAAVQAGVT-----YLNAKDVAQATRIAFQEASPGDVVLL 421
Query: 376 SPGCASFDEFRNFEHRGMVF 395
SP AS+D ++NFE RG F
Sbjct: 422 SPANASWDMYKNFEVRGDEF 441
>gi|296331096|ref|ZP_06873570.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
subtilis subsp. spizizenii ATCC 6633]
gi|305674251|ref|YP_003865923.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
subtilis subsp. spizizenii str. W23]
gi|296151740|gb|EFG92615.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
subtilis subsp. spizizenii ATCC 6633]
gi|305412495|gb|ADM37614.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
subtilis subsp. spizizenii str. W23]
Length = 451
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 110/379 (29%), Positives = 180/379 (47%), Gaps = 36/379 (9%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V +E++ A + + K + +TG+NGK+T T + +ML +A + GN+G
Sbjct: 95 KRGIPVWTEIELAYYLT--NAKFIGITGSNGKTTTTTLIYEMLKADSQKALIAGNIGTVA 152
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
SE A+H + V E+SS+Q+ + F P +S++LNL HL+ H T +NY
Sbjct: 153 SEVAYHADG-------DEWIVTELSSFQL-MGTHAFRPEISLILNLFDAHLDYHHTRENY 204
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K ++ H + ++ NQ ++ LA G +
Sbjct: 205 EKAKQKVYLHQAASDKAIV---NQDDETVVR-----LAEAGKAENIPFSVSKTLEQGAYV 256
Query: 203 AVGVV-----SQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
G++ + + L + + G HN N +AA++V+ G EA+ + H
Sbjct: 257 KDGMIMFNGEAIIPLEEVVLPGAHNLENI-LAAIAVVKT-AGASNEAVKKVLTSFTGVKH 314
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R+Q V ++ + +DSKATN+ AT L K VILL G NGF+ L
Sbjct: 315 RLQYV-TTVKDRKFYNDSKATNILATSKALSAFD--KPVILLAGGL-----DRGNGFDDL 366
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIP-CFAVANMKDAVNHARRMATNGDAIVLS 376
+ H + V+TFG + + K + N + I V N++ AV+ A ++ GD I+LS
Sbjct: 367 KPYMKHVKAVLTFGQTAPKLEK--LGNEMGIQHVKRVDNVEQAVSAAFALSNEGDVILLS 424
Query: 377 PGCASFDEFRNFEHRGMVF 395
P CAS+D+F+ FE RG +F
Sbjct: 425 PACASWDQFKTFEERGDMF 443
>gi|393722596|ref|ZP_10342523.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
PAMC 26605]
Length = 377
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 114/356 (32%), Positives = 167/356 (46%), Gaps = 47/356 (13%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K++ +TGTNGKST V +L GI + +GGN+G P+ E LP+S V V
Sbjct: 59 KVVGITGTNGKSTTTALVHHILQTAGIPSLMGGNIGLPILEQD----PLPASG----VYV 110
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SSYQ+++ + C V+V+LNLTPDHL+R+ + YA +K LF+ T ++
Sbjct: 111 LELSSYQIDLTHSLDC-DVAVLLNLTPDHLDRYDGFEGYAASKARLFAMQSATHAAVIGI 169
Query: 164 GNQH---LNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGR 220
G+ + + +L I PGV +D Q + G
Sbjct: 170 GDTPSALIARGLSARGEHLTKIA--PGVCMD-------------------QSRWPSLQGP 208
Query: 221 HNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
HN NA A + L GV ++ +E PHRM+ V GV +V+DSKATN
Sbjct: 209 HNAQNALAAIAACQAL--GVPEAMIDRGLESFAGLPHRMERVAVR-NGVAFVNDSKATNP 265
Query: 281 EATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKT 340
E+T L + +LGG+AK ++ + H T G +
Sbjct: 266 ESTAPALAAFS--RVHWILGGKAK------ADDLDACAPSFGHVVKAYTIGEAAQRFAAI 317
Query: 341 LVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
L +P ++ AV HA A GD ++LSP CASFD+FR+FE RG F+
Sbjct: 318 LDGK---VPVEVSGDLATAVAHAAAAAQPGDTVLLSPACASFDQFRDFEDRGDQFR 370
>gi|116627601|ref|YP_820220.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
thermophilus LMD-9]
gi|122267801|sp|Q03L98.1|MURD_STRTD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|116100878|gb|ABJ66024.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
thermophilus LMD-9]
Length = 450
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 107/358 (29%), Positives = 171/358 (47%), Gaps = 37/358 (10%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+ +TG+NGK+T T + +LNH G + GN+G P SE A S V+
Sbjct: 114 IIGITGSNGKTTTTTMIADVLNHGGKSGVLSGNIGFPASEVA-------QSVTNQDTLVM 166
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+ + + F P ++V+ NL P H++ H + + Y K ++ + M + +L F
Sbjct: 167 ELSSFQL-MGIESFHPHIAVITNLMPTHIDYHGSFEEYVAAKWNIQNEMTSDDFIILNF- 224
Query: 165 NQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKTASFEVPAVGVVSQLQLH--NMKVMGRH 221
NQ L + + A + F V K+D A E + +L +H + V G H
Sbjct: 225 NQDLAKELATQTN--AQVVPFSTVEKVD----GAYLENGGLYFKGELLMHADELGVPGSH 278
Query: 222 NYHNA----AVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
N NA AVA LS GV +A+ T+ HR+Q V I V + +DSK+
Sbjct: 279 NVENALATIAVAKLS------GVSNQAIKETLSSFGGVKHRLQFVDT-IDDVKFYNDSKS 331
Query: 278 TNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLI 337
TN+ AT L K +++ GG + N F++LI + + ++ G S +
Sbjct: 332 TNILATQKALSGFDNSKVILIAGGLDR------GNEFDELIPDITGLKKMVILGESAPRV 385
Query: 338 WKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
+ G++ ++ DA A A+ GD ++LSP AS+D ++NFE RG F
Sbjct: 386 KRAADKTGVT--YLDAKDVADATRIAFEQASAGDVVLLSPANASWDMYKNFEVRGDEF 441
>gi|450119998|ref|ZP_21865426.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans ST6]
gi|449230787|gb|EMC30035.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans ST6]
Length = 451
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 190/380 (50%), Gaps = 37/380 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ+L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTEKDFLVLNF-NQNLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q + +I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR---RMATNGDAIVL 375
+ + +I G S + V G++ N KD R + A+ GD ++L
Sbjct: 367 PDIKGLKKMIILGESAPRLKHAAVQAGVT-----YLNAKDVAQATRIAFQEASPGDVVLL 421
Query: 376 SPGCASFDEFRNFEHRGMVF 395
SP AS+D ++NFE RG F
Sbjct: 422 SPANASWDMYKNFEVRGDEF 441
>gi|421352109|ref|ZP_15802474.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE-25]
gi|395952554|gb|EJH63168.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE-25]
Length = 440
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 123/422 (29%), Positives = 191/422 (45%), Gaps = 70/422 (16%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + ++A+TG+NG
Sbjct: 61 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV--DTPVIAITGSNG 118
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 119 KSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLET 169
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQHL 168
+ LNL+ DH++R++ M++Y K +F H +VN P HL
Sbjct: 170 TSSLKL-KAGAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAHL 228
Query: 169 NEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYH 224
G +F+LA + EA A E + ++GRHN
Sbjct: 229 QVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------LSLVGRHNVA 274
Query: 225 N--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+ +
Sbjct: 275 NVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVAS 329
Query: 283 TCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTL 341
T L LK + +L+GG K G + ++ L C FG G
Sbjct: 330 TLAALSGLKIEGQLYLLVGGVGK---GADFTPLAPVLATLPVQLC--CFGVDGHQF---- 380
Query: 342 VNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
+P A D+ + R +GD ++LSP CASFD+F+NF RG +F +
Sbjct: 381 ------MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQ 434
Query: 398 LA 399
LA
Sbjct: 435 LA 436
>gi|302876095|ref|YP_003844728.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
cellulovorans 743B]
gi|307686818|ref|ZP_07629264.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
cellulovorans 743B]
gi|302578952|gb|ADL52964.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
cellulovorans 743B]
Length = 448
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 102/370 (27%), Positives = 194/370 (52%), Gaps = 23/370 (6%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++EL+ A + P+ +KI+ +TGTNGK+T T + ++L ++AF+ GN+G P+
Sbjct: 94 VINELELAFRYFPQGVKIIGITGTNGKTTTTTIIYEILKKAAVDAFLMGNIGYPV----- 148
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
C + S +A++EVS +Q+ F +SV+ N++ HL+ H + Y K
Sbjct: 149 -C-SFVSQLKDNDIALMEVSDHQL-CNVIEFKTNISVLTNISEAHLDFHGSYDIYKSMKK 205
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
+F+H + + +L ++ + + K + + K+ ++
Sbjct: 206 RIFNHHTKSDMAILNLDDKEVLDLTKDIKSTKKYFSFSSSNKLGCTITDGYIYYNNDKII 265
Query: 208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQ 267
S L +K+ G+HNY N +AA++V+ ++G++ + + ++ HR++ V + I
Sbjct: 266 S---LDEVKIKGKHNYEN-VMAAIAVVK-ELGIENQVITDLLKTFGGVEHRIEYV-KTIN 319
Query: 268 GVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCV 327
+ + +DSKATN+++T T L ++LLGG + + F+ L E L++ + +
Sbjct: 320 NIDFYNDSKATNIKSTQTALSSFT-KPTILLLGGLDR------GHSFDSLKEYLSNVKLI 372
Query: 328 ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ FG + + I G IPC V ++ +A A A+ GD ++LSP CA++D+F++
Sbjct: 373 VAFGEAKIRIEDFAKKCG--IPCNLVNSLGEATEIAYNSASEGDVVLLSPACAAWDQFKD 430
Query: 388 FEHRGMVFQE 397
FE RG +F+E
Sbjct: 431 FEVRGNLFKE 440
>gi|449920182|ref|ZP_21798370.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 1SM1]
gi|449158975|gb|EMB62373.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 1SM1]
Length = 451
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 189/380 (49%), Gaps = 37/380 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTEKDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q + +I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR---RMATNGDAIVL 375
+ + +I G S + V G++ N KD R + A+ GD ++L
Sbjct: 367 PDIKGLKKMIILGESAPRLKHAAVQAGVT-----YLNAKDVAQATRIAFQEASPGDVVLL 421
Query: 376 SPGCASFDEFRNFEHRGMVF 395
SP AS+D ++NFE RG F
Sbjct: 422 SPANASWDMYKNFEVRGDEF 441
>gi|398798933|ref|ZP_10558229.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pantoea sp. GM01]
gi|398099531|gb|EJL89788.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pantoea sp. GM01]
Length = 438
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 173/381 (45%), Gaps = 79/381 (20%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + VGGN+G P AL K Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMARAAGWQVGVGGNIGLP---------ALTLLKSPAQLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E + + +LNLT DH++R+ M+ Y K ++ + +VN G
Sbjct: 158 ELSSFQLETTHS-LKAAAATILNLTEDHMDRYPLGMQQYRAAKLRIYENASVCVVNADDG 216
Query: 160 L---------------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+ + G+ HLN+ + W+ A G K+
Sbjct: 217 MTMPVRGVDQRCVSFGINLGDYHLNQ-----QQGSTWLRA-KGEKV-------------- 256
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI--GVDVEALNSTIEILRTPPHRMQIV 262
L M ++G+HNY NA A ++I ++AL + + HR Q+V
Sbjct: 257 -----LNTDEMTLVGQHNYTNALAALALADAVNIPRASSLKALTTFTGL----AHRFQLV 307
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKVLNGQESNGFEKLIEPL 321
H + GV W++DSKATN+ +T L L+ + +LLGG K S F L L
Sbjct: 308 H-EANGVRWINDSKATNVGSTEAALNGLQVKGTLWLLLGGDGK------SADFSPLARYL 360
Query: 322 NHHRC-VITFGYSGVLIWKTLVNNGLSIPCFAVAN--MKDAVNHARRMATNGDAIVLSPG 378
+ + FG G + P A M+ A+ T GD ++LSP
Sbjct: 361 QGDKVKLFCFGRDGDALAALR-------PEIATRTDTMQQAMTQIAAQVTAGDMVLLSPA 413
Query: 379 CASFDEFRNFEHRGMVFQELA 399
CAS D+FRNFE RG F +LA
Sbjct: 414 CASLDQFRNFEQRGDQFAQLA 434
>gi|28897232|ref|NP_796837.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
parahaemolyticus RIMD 2210633]
gi|153839040|ref|ZP_01991707.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
parahaemolyticus AQ3810]
gi|260366058|ref|ZP_05778524.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
parahaemolyticus K5030]
gi|260878313|ref|ZP_05890668.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
parahaemolyticus AN-5034]
gi|260896402|ref|ZP_05904898.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
parahaemolyticus Peru-466]
gi|433656751|ref|YP_007274130.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
parahaemolyticus BB22OP]
gi|33301382|sp|Q87SG6.1|MURD_VIBPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|28805441|dbj|BAC58721.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio
parahaemolyticus RIMD 2210633]
gi|149747468|gb|EDM58416.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
parahaemolyticus AQ3810]
gi|308087563|gb|EFO37258.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
parahaemolyticus Peru-466]
gi|308093171|gb|EFO42866.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
parahaemolyticus AN-5034]
gi|308111373|gb|EFO48913.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
parahaemolyticus K5030]
gi|432507439|gb|AGB08956.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
parahaemolyticus BB22OP]
Length = 437
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 114/393 (29%), Positives = 178/393 (45%), Gaps = 55/393 (13%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ +L G V+ +++ A + + + +A+TG+NGKSTV G M G+ VGGN
Sbjct: 85 IQTVLAKGTPVVGDIELFAWAVNKPV--VAITGSNGKSTVTDLTGVMAKAAGLTVGVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P AL + + V+E+SS+Q+E + + LNL+ DH++R++
Sbjct: 143 IGVP---------ALELLEQDADLYVLELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYE 192
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
M +Y K +F H +L ++ +Q ++ P V ++ +
Sbjct: 193 GMADYRAAKLRIFDH---AELAVVNRDDQETYPEVE-----------MPVVTFGSDEQAY 238
Query: 198 SFEVPAVGVVSQLQLH--------NMKVMGRHNYHNAAV--AALSVLGLDIGVDVEALNS 247
EV G + L H +K++G+HN NA V A L G+D + AL +
Sbjct: 239 GLEVD--GSRTWLLDHGQRVIASDELKLVGKHNLANALVVLALLKAAGVDYHNALNALKN 296
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILLGGQAKVL 306
+ HR Q+V D +GV WV+DSKATN+ +T L L+ K +L+GG K
Sbjct: 297 YTGL----THRCQVV-ADNRGVKWVNDSKATNIASTMAALSGLESTGKLYLLVGGVGK-- 349
Query: 307 NGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRM 366
G + + + LN C FG G L M+D +
Sbjct: 350 -GADFTPLKPIFATLNLQLCC--FGLDGDDFMP------LHESAIRFNTMEDVIQQISSQ 400
Query: 367 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
+GD ++LSP CASFD+F NF RG F LA
Sbjct: 401 LKSGDMVMLSPACASFDQFDNFMARGDAFAVLA 433
>gi|450056566|ref|ZP_21842115.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NLML4]
gi|449206689|gb|EMC07385.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NLML4]
Length = 451
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 190/380 (50%), Gaps = 37/380 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ+L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTEKDFLVLNF-NQNLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q + +I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR---RMATNGDAIVL 375
+ + +I G S + V G++ N KD R + A+ GD ++L
Sbjct: 367 PDIKGLKKMIILGESAPRLKHAAVQAGVT-----YLNAKDVAQATRIAFQEASPGDVVLL 421
Query: 376 SPGCASFDEFRNFEHRGMVF 395
SP AS+D ++NFE RG F
Sbjct: 422 SPANASWDMYKNFEVRGDEF 441
>gi|67459026|ref|YP_246650.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
felis URRWXCal2]
gi|75536538|sp|Q4ULT8.1|MURD_RICFE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|67004559|gb|AAY61485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia felis
URRWXCal2]
Length = 449
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 104/380 (27%), Positives = 181/380 (47%), Gaps = 37/380 (9%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
++S++D + +++ +AVTGTNGKST + +LN G++ V GN+G P +A
Sbjct: 90 IISDIDLLFEK-SKNLNFIAVTGTNGKSTTTALISHILNSNGLDYPVAGNIGVPALQA-- 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+SK + ++E+SS+Q+++ K F ++V+LN+TPDHL+RH+ M Y K
Sbjct: 147 -----KASKDGY---ILELSSFQLDLV-KTFTAKIAVLLNITPDHLDRHQDMTGYIAAKS 197
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203
+F M + N + E + R L F KI + +
Sbjct: 198 KIFDRMDKDSYAAINIDNYYCREIFMLLQQEQRIKLI---PFSVTKILKNGISVVGDKIN 254
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
+S N + G HN N +AA + IGV+ + + +I ++ PHRMQ +
Sbjct: 255 DNDISYKLPFNKNLQGTHNCEN--IAASYAVAKIIGVESKKILESISSFQSLPHRMQYIG 312
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
I + + +DSKATN + + +K + L G + G E++ +
Sbjct: 313 S-INNIGFYNDSKATN---AISAVQSIKALDNIYWLAGGI-----PKEGGIEEIKPYFSK 363
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA----IVLSPGC 379
+ +G + + KT N + C N++ A + A + A +A I+L+P C
Sbjct: 364 IKKAYFYGQAKEIFAKTAKNIVDFVIC---DNLEQAFDLAYKDAVGDNAEVKNILLAPSC 420
Query: 380 ASFDEFRNFEHRGMVFQELA 399
+S+D+F+NFE RG +F +L+
Sbjct: 421 SSYDQFKNFEERGELFMKLS 440
>gi|387783861|ref|YP_006069944.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
salivarius JIM8777]
gi|338744743|emb|CCB95109.1| uDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
salivarius JIM8777]
Length = 450
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 114/385 (29%), Positives = 181/385 (47%), Gaps = 39/385 (10%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+A L+ G V +E++ A V I+ +TG+NGK+T T + +LNH G + GN
Sbjct: 89 VARALEKGIPVWTEVELAYLV--SEAPIIGITGSNGKTTTTTMIADVLNHGGKSGVLSGN 146
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P SE A A + V+E+SS+Q+ + F P ++V+ NL P H++ H
Sbjct: 147 IGFPASEVAQSVTAQDT-------LVMELSSFQL-MGIDSFHPHIAVITNLMPTHIDYHG 198
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKT 196
T + Y K ++ + M +L F NQ L + + A + F V K+D
Sbjct: 199 TFEEYVAAKWNIQNQMTADDFVVLNF-NQDLAKELATQ--TKAQVVPFSTVEKVD----G 251
Query: 197 ASFEVPAVGVVSQL--QLHNMKVMGRHNYHNA----AVAALSVLGLDIGVDVEALNSTIE 250
A E + +L Q + V G HN NA AVA LS G+ +A+ T+
Sbjct: 252 AYLENGGLYFKGELVMQADEIGVPGSHNVENALATIAVAKLS------GISNQAIKETLA 305
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
HR+Q V I V + +DSK+TN+ AT L K +++ GG +
Sbjct: 306 SFGGVKHRLQFVDT-IDEVRFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------ 358
Query: 311 SNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 370
N F++LI + + ++ G S + + G++ ++ DA A A+ G
Sbjct: 359 GNEFDELIPDITGLKKMVILGESAPRVKRAADKAGVT--YLDAKDVADATRIAFDQASAG 416
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVF 395
D ++LSP AS+D ++NFE RG F
Sbjct: 417 DVVLLSPANASWDMYKNFEVRGDEF 441
>gi|397649275|ref|YP_006489802.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans GS-5]
gi|449908643|ref|ZP_21793867.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans OMZ175]
gi|449991922|ref|ZP_21822098.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NVAB]
gi|449996510|ref|ZP_21823572.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans A9]
gi|450011793|ref|ZP_21829330.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans A19]
gi|450024083|ref|ZP_21831009.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans U138]
gi|450064063|ref|ZP_21845242.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NLML5]
gi|450088536|ref|ZP_21854823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NV1996]
gi|450109960|ref|ZP_21861820.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SM6]
gi|450125361|ref|ZP_21867618.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans U2A]
gi|450132356|ref|ZP_21870010.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NLML8]
gi|392602844|gb|AFM81008.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans GS-5]
gi|449153225|gb|EMB56912.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NLML8]
gi|449180393|gb|EMB82551.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NVAB]
gi|449183015|gb|EMB85014.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans A9]
gi|449189095|gb|EMB90773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans A19]
gi|449192413|gb|EMB93835.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans U138]
gi|449204026|gb|EMC04849.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NLML5]
gi|449216447|gb|EMC16565.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NV1996]
gi|449225715|gb|EMC25301.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SM6]
gi|449232544|gb|EMC31652.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans U2A]
gi|449262780|gb|EMC60223.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans OMZ175]
Length = 451
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 189/380 (49%), Gaps = 37/380 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTEKDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q + +I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR---RMATNGDAIVL 375
+ + +I G S + V G++ N KD R + A+ GD ++L
Sbjct: 367 PDIKGLKKMIILGESAPRLKHAAVQAGVT-----YLNAKDVAQATRIAFQEASPGDVVLL 421
Query: 376 SPGCASFDEFRNFEHRGMVF 395
SP AS+D ++NFE RG F
Sbjct: 422 SPANASWDMYKNFEVRGDEF 441
>gi|227118847|ref|YP_002820743.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
O395]
gi|227014297|gb|ACP10507.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
O395]
Length = 467
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 125/423 (29%), Positives = 192/423 (45%), Gaps = 72/423 (17%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELD-FAAQVIPRSIKILAVTGTN 52
W L WL + + G+A +L +G V+ +++ FA V ++A+TG+N
Sbjct: 88 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV---DTPVIAITGSN 144
Query: 53 GKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME 112
GKSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 145 GKSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLE 195
Query: 113 IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQH 167
+ + LNL+ DH++R++ M +Y K +F H +VN P H
Sbjct: 196 TTSSLKL-KAAAFLNLSEDHMDRYQGMGDYRQAKLRIFDHAETAVVNADDTQTFPDHAAH 254
Query: 168 LNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
L G +F+LA + EA A E + ++GRHN
Sbjct: 255 LQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------LSLVGRHNV 300
Query: 224 HN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE 281
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+
Sbjct: 301 TNVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVA 355
Query: 282 ATCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKT 340
+T L LK + +L+GG K G + ++ L C FG G
Sbjct: 356 STLAALSGLKIEGQLYLLVGGVGK---GADFTPLAPVLATLPVQLC--CFGVDGHQF--- 407
Query: 341 LVNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
+P A D+ + R +GD ++LSP CASFD+F+NF RG +F
Sbjct: 408 -------MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFA 460
Query: 397 ELA 399
+LA
Sbjct: 461 QLA 463
>gi|418977949|ref|ZP_13525756.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
mitis SK575]
gi|383349150|gb|EID27100.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
mitis SK575]
Length = 450
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 182/378 (48%), Gaps = 33/378 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G +L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGDVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A S K V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTA----SDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTA 197
Y K ++ + M +L F NQ L + + A + F + K+D E
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKELATK--TQATVVPFSTLEKVDGAYLEDGQL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F V S++ V G HN N A+A ++V L GVD + + T+ H
Sbjct: 260 YFRGEVVMAASEI-----GVPGSHNVEN-ALATIAVAKLR-GVDNKTIKETLSAFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R+Q V +I+GV + +DSK+TN+ AT L K +++ GG + N F++L
Sbjct: 313 RLQFVD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDEL 365
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
+ + + ++ G S + + G++ ++ DA A +A GD ++LSP
Sbjct: 366 VPDITGLKKMVILGQSAERVKRAADKAGVA--YVDATDIADATRKAYELAIQGDVVLLSP 423
Query: 378 GCASFDEFRNFEHRGMVF 395
AS+D + NFE RG +F
Sbjct: 424 ANASWDMYANFEVRGDLF 441
>gi|399524010|ref|ZP_10764597.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Atopobium sp.
ICM58]
gi|398374896|gb|EJN52411.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Atopobium sp.
ICM58]
Length = 481
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 111/384 (28%), Positives = 168/384 (43%), Gaps = 65/384 (16%)
Query: 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
L VTGTNGK+T V +GQ+L G++A GN+G P++ A +V VE
Sbjct: 115 LTVTGTNGKTTTVGMLGQILRASGVKAEEVGNIGTPITRAI---------DSDAEVFAVE 165
Query: 106 VSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGN 165
+SS+Q+ + P SV LN+ DHL+ H +++ YA K ++ + V + + P +
Sbjct: 166 LSSFQLHT-ARTVRPLASVCLNVDADHLDWHGSVEAYAADKARVYENTV--RACVYPAAD 222
Query: 166 QHLN------EAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMG 219
+ + + ++G R IG G V G+V L + V
Sbjct: 223 RRVEAMVENADVVEGARA----IGLTLGAP----------SVSQFGIVEGLLVDRAFVDD 268
Query: 220 RHNYHNAAVAALSVLG----------------------LDIGVDVEALNSTIEILRTPPH 257
R H A+A +S L GV+ EA+ + R H
Sbjct: 269 RAR-HALALAHVSDLSEAFGPHPSPAVLSDALAAAAMARAYGVEPEAVEEGLRSFRPAGH 327
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R +V R +TW+DDSKATN A L L + ++GG AK GQ+
Sbjct: 328 RRAVVAR-AADLTWIDDSKATNAHAARASLSGLPPRSAIWIVGGDAK---GQDFTELISQ 383
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKD----AVNHARRMATNGDAI 373
+EP+ R V+ G + L + +P V +D VN A ++ GD +
Sbjct: 384 VEPV--LRGVVVIGADRRALVAALASGAPGVPVVEVDGHQDWMFSVVNEAVALSRPGDTV 441
Query: 374 VLSPGCASFDEFRNFEHRGMVFQE 397
VL+P CAS+D+F N+ RG VF E
Sbjct: 442 VLAPACASWDQFDNYGQRGDVFAE 465
>gi|450033869|ref|ZP_21834020.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans M21]
gi|450078223|ref|ZP_21850907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans N3209]
gi|449196944|gb|EMB98175.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans M21]
gi|449210272|gb|EMC10742.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans N3209]
Length = 451
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 189/380 (49%), Gaps = 37/380 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTEKDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q + +I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR---RMATNGDAIVL 375
+ + +I G S + V G++ N KD R + A+ GD ++L
Sbjct: 367 PDIKGLKKMIILGESAPRLKHAAVQAGVT-----YLNAKDVAQATRIAFQEASPGDVVLL 421
Query: 376 SPGCASFDEFRNFEHRGMVF 395
SP AS+D ++NFE RG F
Sbjct: 422 SPANASWDMYKNFEVRGDEF 441
>gi|450143389|ref|ZP_21873428.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 1ID3]
gi|449152348|gb|EMB56058.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 1ID3]
Length = 451
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 189/380 (49%), Gaps = 37/380 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTKEDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q + +I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR---RMATNGDAIVL 375
+ + +I G S + V G++ N KD R + A+ GD ++L
Sbjct: 367 PDIKGLKKMIILGESAPRLKHAAVQAGVT-----YLNAKDVAQATRIAFQEASPGDVVLL 421
Query: 376 SPGCASFDEFRNFEHRGMVF 395
SP AS+D ++NFE RG F
Sbjct: 422 SPANASWDMYKNFEVRGDEF 441
>gi|24379029|ref|NP_720984.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans UA159]
gi|387786622|ref|YP_006251718.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans LJ23]
gi|449863362|ref|ZP_21778208.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans U2B]
gi|449870278|ref|ZP_21780568.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 8ID3]
gi|449904587|ref|ZP_21792743.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans M230]
gi|449947996|ref|ZP_21807757.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 11SSST2]
gi|449953899|ref|ZP_21809149.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 4VF1]
gi|449984132|ref|ZP_21818849.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NFSM2]
gi|450048091|ref|ZP_21839644.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans N34]
gi|450137347|ref|ZP_21871586.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NLML1]
gi|30316024|sp|Q8DVE3.1|MURD_STRMU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|24376923|gb|AAN58290.1|AE014899_9 putative D-glutamic acid adding enzyme MurD;
UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Streptococcus mutans UA159]
gi|379133023|dbj|BAL69775.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans LJ23]
gi|449156820|gb|EMB60278.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 8ID3]
gi|449168004|gb|EMB70848.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 11SSST2]
gi|449171360|gb|EMB74024.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 4VF1]
gi|449180600|gb|EMB82753.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NFSM2]
gi|449197152|gb|EMB98359.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans N34]
gi|449235421|gb|EMC34379.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NLML1]
gi|449259116|gb|EMC56660.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans M230]
gi|449265091|gb|EMC62420.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans U2B]
Length = 451
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 189/380 (49%), Gaps = 37/380 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTKEDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q + +I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR---RMATNGDAIVL 375
+ + +I G S + V G++ N KD R + A+ GD ++L
Sbjct: 367 PDIKGLKKMIILGESAPRLKHAAVQAGVT-----YLNAKDVAQATRIAFQEASPGDVVLL 421
Query: 376 SPGCASFDEFRNFEHRGMVF 395
SP AS+D ++NFE RG F
Sbjct: 422 SPANASWDMYKNFEVRGDEF 441
>gi|94987544|ref|YP_595477.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lawsonia
intracellularis PHE/MN1-00]
gi|442556398|ref|YP_007366223.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lawsonia
intracellularis N343]
gi|122063249|sp|Q1MPC1.1|MURD_LAWIP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|94731793|emb|CAJ55156.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lawsonia
intracellularis PHE/MN1-00]
gi|441493845|gb|AGC50539.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lawsonia
intracellularis N343]
Length = 440
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 110/375 (29%), Positives = 174/375 (46%), Gaps = 52/375 (13%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
+V+SE + A + K++A+TGTNGK+T+ + ML GI FVGGN+G PLSE
Sbjct: 106 QVLSETELAWYQLSNE-KVIAITGTNGKTTIASLCAAMLVEQGISVFVGGNIGTPLSEYV 164
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
K K V V+E+SS+Q++ + F P +++ N++ +HL+ H+ M Y K
Sbjct: 165 L-------CKKKVSVVVLELSSFQLQTCS-LFRPDIAICSNISINHLDYHRNMDEYISAK 216
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
++ + + L +L PG+ EA S+ + A V
Sbjct: 217 LNICKNQCESDLAILK-----------------------PGM----EALVDSYNLKA-RV 248
Query: 207 VSQLQLHNM---KVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
V L N +++G HN NA A L+ ++GV E + HR++ V
Sbjct: 249 VFYRDLGNFSTSRLLGVHNLENAEAAWLAC--KELGVTEEIAKKVVTTFEPLEHRLEQV- 305
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
R + GV +V+DSK T +EA L K ++L GG+ K G + +I+
Sbjct: 306 RLLNGVLYVNDSKGTTVEALRAALESFK-QPILLLAGGRFK---GGDLTSLRPIIK--KQ 359
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 383
R V FG S G IP ++ AV +A NG+ I+L+P +SFD
Sbjct: 360 VRIVGLFGNSREYFEDAW---GDIIPITWDNTLEQAVKRLSNLAHNGEVILLAPATSSFD 416
Query: 384 EFRNFEHRGMVFQEL 398
++ N+ RG F+ +
Sbjct: 417 QYMNYIERGNDFKRI 431
>gi|404378086|ref|ZP_10983185.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Simonsiella
muelleri ATCC 29453]
gi|294483950|gb|EFG31633.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Simonsiella
muelleri ATCC 29453]
Length = 443
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 106/374 (28%), Positives = 180/374 (48%), Gaps = 25/374 (6%)
Query: 23 QSGKRVMSELDFAAQVIP-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+ G +V+ ++ A ++ +S KI+A+TG+NGK+T + VG + G++ V GN+G P
Sbjct: 87 ERGGKVIGDVAILADLLKNQSDKIIAITGSNGKTTTTSLVGYLCEQSGLDTVVAGNIGMP 146
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA L V V+E+SS+Q+E + Y + LN++ DHL+R+ + +
Sbjct: 147 VLEA-----WLVRGGKSADVWVLELSSFQLETTD-YLDADAATCLNISEDHLDRYDDLLD 200
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
YA TK +F N K + + A+K + + + ++ + S +
Sbjct: 201 YARTKDMIF----NGKAIQVLNADDAFCCAMKRENRPIHYFSLSQSIDYYLDSVSGSLKH 256
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
++ Q ++ + G HN N +AAL+ L +G+ L I + + PHR++
Sbjct: 257 QGADLMPQT---DIPLQGSHNVAN-VLAALA-LCESVGLARADLLKYIRVFKGLPHRVEK 311
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V GV ++DDSK TN+ AT ++ L K ++ GG K GQ+ ++
Sbjct: 312 VGEK-NGVIFIDDSKGTNVGATVAAIVGLP-EKIWLIAGGMGK---GQDFTPLRGVLR-- 364
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
V G I + L N G+ + + +AV A A +GD ++LSP CAS
Sbjct: 365 GKVGAVFLIGVDAPKIARDLDNCGVDL--IFCDTLPEAVQRAYSQAKSGDIVLLSPACAS 422
Query: 382 FDEFRNFEHRGMVF 395
FD F+ + HR VF
Sbjct: 423 FDMFKGYAHRSEVF 436
>gi|450175250|ref|ZP_21885041.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SM1]
gi|449247112|gb|EMC45400.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SM1]
Length = 451
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 189/380 (49%), Gaps = 37/380 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTKEDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q + +I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR---RMATNGDAIVL 375
+ + +I G S + V G++ N KD R + A+ GD ++L
Sbjct: 367 PDIKGLKKMIILGESAPRLKHAAVQAGVT-----YLNAKDVAQATRIAFQEASPGDVVLL 421
Query: 376 SPGCASFDEFRNFEHRGMVF 395
SP AS+D ++NFE RG F
Sbjct: 422 SPANASWDMYKNFEVRGDEF 441
>gi|354603421|ref|ZP_09021419.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Alistipes
indistinctus YIT 12060]
gi|353348801|gb|EHB93068.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Alistipes
indistinctus YIT 12060]
Length = 452
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 116/388 (29%), Positives = 185/388 (47%), Gaps = 36/388 (9%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ L + G V+SE++FA + S + + +TG+NGK+T T +ML + + GN
Sbjct: 79 VKALRERGIPVVSEIEFAGRYTDGS-RTICITGSNGKTTTTTLAYEMLRQADLSVGLAGN 137
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERH 136
+G AL + F V+E+SS+Q++ Y F V V++N+TPDHL+R+
Sbjct: 138 IG--------QSFALEVATEYFDWYVIELSSFQLD--GMYDFRADVGVLMNITPDHLDRY 187
Query: 137 K-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP-GVKIDTEA 194
++NY +K + + T + + E + H N+ P GVK TE
Sbjct: 188 DHKLQNYVDSKFRILQNQRATDKFVYCADDPLTLENLGRHDRNME---VLPFGVKC-TEG 243
Query: 195 KTASFE-----VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
AS + V G + + +K+ G HN +NA A S+ L GV E++ T+
Sbjct: 244 CAASLDGDTIRVRVDGKELSIGVDELKIKGVHNIYNAMAA--SIAALSAGVPPESICQTL 301
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
HR++ + GV +++DSKATN+++ L ++ V + GG K
Sbjct: 302 RTFTGVEHRLEPCG-EYGGVQYINDSKATNVDSVWYALDSMR-RPTVWIAGGTDK----- 354
Query: 310 ESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIP-CFAVANMKDAVNHARRMAT 368
N + +L PL R V T GV K + IP ++ +A+ A R A
Sbjct: 355 -GNDYSRLF-PLVEGR-VKTLVCMGVDNAKLMREFAGRIPEIVDTHSLGEAMEAAVRSAA 411
Query: 369 NGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
GD ++LSP CASFD F+N+E RG F+
Sbjct: 412 PGDTVLLSPACASFDLFKNYEQRGEQFK 439
>gi|55820797|ref|YP_139239.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
thermophilus LMG 18311]
gi|55822698|ref|YP_141139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
thermophilus CNRZ1066]
gi|386086409|ref|YP_006002283.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
thermophilus ND03]
gi|386344422|ref|YP_006040586.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
(UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
(D-glutamic acid-adding enzyme) [Streptococcus
thermophilus JIM 8232]
gi|387909506|ref|YP_006339812.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
thermophilus MN-ZLW-002]
gi|62900662|sp|Q5M0D5.1|MURD_STRT1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|62900663|sp|Q5M4Y2.1|MURD_STRT2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|55736782|gb|AAV60424.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
thermophilus LMG 18311]
gi|55738683|gb|AAV62324.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
thermophilus CNRZ1066]
gi|312278122|gb|ADQ62779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
thermophilus ND03]
gi|339277883|emb|CCC19631.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
(UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
(D-glutamic acid-adding enzyme) [Streptococcus
thermophilus JIM 8232]
gi|387574441|gb|AFJ83147.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
thermophilus MN-ZLW-002]
Length = 450
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 107/358 (29%), Positives = 171/358 (47%), Gaps = 37/358 (10%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+ +TG+NGK+T T + +LNH G + GN+G P SE A S V+
Sbjct: 114 IIGITGSNGKTTTTTMIADVLNHGGKSGVLSGNIGFPASEVA-------QSVTNQDTLVM 166
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+ + + F P ++V+ NL P H++ H + + Y K ++ + M + +L F
Sbjct: 167 ELSSFQL-MGIESFHPHIAVITNLMPTHIDYHGSFEEYVAAKWNIQNEMTSDDFIILNF- 224
Query: 165 NQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKTASFEVPAVGVVSQLQLH--NMKVMGRH 221
NQ L + + A + F V K+D A E + +L +H + V G H
Sbjct: 225 NQDLAKELATQTN--AQVVPFSTVEKVD----GAYLENGGLYFKGELLMHADELGVPGSH 278
Query: 222 NYHNA----AVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
N NA AVA LS GV +A+ T+ HR+Q V I V + +DSK+
Sbjct: 279 NVENALATIAVAKLS------GVSNQAIKETLSSFGGVKHRLQFVDT-IDDVKFYNDSKS 331
Query: 278 TNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLI 337
TN+ AT L K +++ GG + N F++LI + + ++ G S +
Sbjct: 332 TNILATQKALSGFDNSKVILIAGGLDR------GNEFDELIPDITGLKKMVILGESAPRV 385
Query: 338 WKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
+ G++ ++ DA A A+ GD ++LSP AS+D ++NFE RG F
Sbjct: 386 KRAADKAGVT--YLDAKDVADATRIAFEQASAGDVVLLSPANASWDMYKNFEVRGDEF 441
>gi|418718421|ref|ZP_13277954.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
borgpetersenii str. UI 09149]
gi|418737602|ref|ZP_13293999.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
borgpetersenii serovar Castellonis str. 200801910]
gi|410744783|gb|EKQ93519.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
borgpetersenii str. UI 09149]
gi|410746796|gb|EKQ99702.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
borgpetersenii serovar Castellonis str. 200801910]
Length = 462
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 114/391 (29%), Positives = 175/391 (44%), Gaps = 78/391 (19%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
KI+ +TGT+GKST + V +L + GGNLG P + I+L AV
Sbjct: 103 KIIGITGTDGKSTTTSLVAHLLKKDFSDLKEGGNLGIPFTSFCKEPISL---------AV 153
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHL-------FSHMVNT 156
+E+SSYQ+E + VSV LNL PDHLERH+TM+NY K + S +V+
Sbjct: 154 LELSSYQLEDSSPLDL-NVSVFLNLAPDHLERHETMENYFRAKLKIADLQNPNHSLIVSE 212
Query: 157 KL------------GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K+ LL FG +EAI +E +T+ F +
Sbjct: 213 KIREKILNSTSVRCKLLSFGRATTSEAILDES--------------SSEIRTSKF----I 254
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+S+ L G HN N A A L+ IG E++ + I PHR QI
Sbjct: 255 YDISRFYLP-----GTHNRENLAAAILASEA--IGGKPESIQAQIPFFMGLPHRFQIAGE 307
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
+G+++++DSK+TNL + G+ K + ++LGG+ K + + F +
Sbjct: 308 K-RGISFINDSKSTNLHSMLAGMSTWKNLDRTCLILGGRPKQEDPKPLYDFL-----MRR 361
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVN------------HARRMATNGD 371
CV+ G + +W+ + N + F+V N+ +A R++ + +
Sbjct: 362 IGCVVLIGEARS-VWEKGIRNVIGEKLFSVENLDEAFKIFKKWNVISESPEIRKIRLSSE 420
Query: 372 ----AIVLSPGCASFDEFRNFEHRGMVFQEL 398
V SP C SFD+++NFE RG F L
Sbjct: 421 ITISYFVFSPACVSFDQYKNFEERGNHFLSL 451
>gi|319789935|ref|YP_004151568.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermovibrio
ammonificans HB-1]
gi|317114437|gb|ADU96927.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermovibrio
ammonificans HB-1]
Length = 413
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 121/401 (30%), Positives = 184/401 (45%), Gaps = 76/401 (18%)
Query: 21 LLQSGKR----VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG 76
LL+ KR V E++ + S ++VTGTNGKST + L G E+F+GG
Sbjct: 56 LLEKAKRAGIPVYGEVELGYRF--SSGSFISVTGTNGKSTTTAVIYHALKLSGRESFIGG 113
Query: 77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH 136
N G PLS AL +++ F +E+SS+Q+E F VSV LN+TPDHL R+
Sbjct: 114 NYGIPLS-----TFALDTTEESF--TALELSSFQIEDLTS-FRSRVSVFLNVTPDHLNRY 165
Query: 137 KTMKNYALTKCHL---------------FSHMVNTKLGLLPFG---NQHLNEAIKGHRFN 178
+ + Y K L F H+ KLG+ F + + ++G
Sbjct: 166 SSFEEYREAKLRLLDFSDCAVVNGDDPSFKHL-KGKLGIYTFSVSTDSGADARVEGELL- 223
Query: 179 LAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI 238
F G +I E+P G+ HN++ NY A VA V
Sbjct: 224 -----VFSGYRIPYR------ELPLKGI------HNLE-----NYLAALVALAVV----- 256
Query: 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL 298
G+ E + + + PHR ++V R GV +V+DSKATN +A L + V++
Sbjct: 257 GLSEEEIYEGFKAFKGLPHRCEVVGRK-GGVVFVNDSKATNPDAMKKALESFR--SVVLI 313
Query: 299 LGGQAKVLNGQESNGFEKLIEPLNHHR--CVITFGYSGVLIWKTLVNNGLSIPCFAVANM 356
GG K L+ +E ++PL R ++ G + + +T ++M
Sbjct: 314 AGGSDKGLDFKE-------LKPLVKSRVKALVAIGETAGKLVETFKEETY---VLTASSM 363
Query: 357 KDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
++AV A +A + ++LSPGCASFD F+NF+ RG F+E
Sbjct: 364 EEAVERAYALAGDEGVVLLSPGCASFDMFKNFQERGERFRE 404
>gi|410667611|ref|YP_006919982.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD
[Thermacetogenium phaeum DSM 12270]
gi|409105358|gb|AFV11483.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD
[Thermacetogenium phaeum DSM 12270]
Length = 455
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 189/376 (50%), Gaps = 25/376 (6%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
+ SEL+ A+++I I +A+TGTNGK+T +G + GI A V GN+G PL
Sbjct: 96 IWSELELASRLIGEPI--IAITGTNGKTTTTALLGYIFEKAGIPAAVAGNIGIPLIREVD 153
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ K VVEVSS+Q+E ++ F P ++V LNLTPDH++RH +++Y K
Sbjct: 154 RVL---HGGRKVHYWVVEVSSFQLERIDR-FRPHIAVFLNLTPDHIDRHGDLESYGKIKS 209
Query: 148 HLFSHMVNTKLGLLPFGNQHLNE---AIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+F++ ++ + L A+ + + P I + + +
Sbjct: 210 RIFANQGADDWAVVNLDDSWLASNMPAVTSRVYGFS-RRRLPAEGIGVQGGEICYHLK-- 266
Query: 205 GVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
G +L +K+ G HN NA AA + L GVD E++ + PHR++ V
Sbjct: 267 GKRERLCAADTVKMPGPHNLENALAAAAAA--LLAGVDRESVAGALATFPGVPHRLEEV- 323
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
R ++GV +V+DSK TN E+ L D + +++ GG+ K + FE+L +
Sbjct: 324 RVLKGVKYVNDSKGTNPESVSRAL-DSFTNPVILIAGGRHK------GSDFEELARKVKE 376
Query: 324 H-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASF 382
+ +I G + +I + + G + A++ + V A R+A GD ++LSP CAS+
Sbjct: 377 KAKALILIGEAAGIIRQAVSGTGFK-NIYDAASLAEGVQIASRLAEPGDVVLLSPACASW 435
Query: 383 DEFRNFEHRGMVFQEL 398
D FR++E RG F++L
Sbjct: 436 DMFRDYEERGECFKKL 451
>gi|121728372|ref|ZP_01681401.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
V52]
gi|147674702|ref|YP_001217905.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
cholerae O395]
gi|262168384|ref|ZP_06036081.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
RC27]
gi|172047587|sp|A5F5N1.1|MURD_VIBC3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|121629363|gb|EAX61794.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
V52]
gi|146316585|gb|ABQ21124.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
O395]
gi|262023276|gb|EEY41980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
RC27]
Length = 440
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 125/423 (29%), Positives = 192/423 (45%), Gaps = 72/423 (17%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELD-FAAQVIPRSIKILAVTGTN 52
W L WL + + G+A +L +G V+ +++ FA V ++A+TG+N
Sbjct: 61 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV---DTPVIAITGSN 117
Query: 53 GKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME 112
GKSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 118 GKSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLE 168
Query: 113 IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQH 167
+ + LNL+ DH++R++ M +Y K +F H +VN P H
Sbjct: 169 TTSSLKL-KAAAFLNLSEDHMDRYQGMGDYRQAKLRIFDHAETAVVNADDTQTFPDHAAH 227
Query: 168 LNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
L G +F+LA + EA A E + ++GRHN
Sbjct: 228 LQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------LSLVGRHNV 273
Query: 224 HN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE 281
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+
Sbjct: 274 TNVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVA 328
Query: 282 ATCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKT 340
+T L LK + +L+GG K G + ++ L C FG G
Sbjct: 329 STLAALSGLKIEGQLYLLVGGVGK---GADFTPLAPVLATLPVQLC--CFGVDGHQF--- 380
Query: 341 LVNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
+P A D+ + R +GD ++LSP CASFD+F+NF RG +F
Sbjct: 381 -------MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFA 433
Query: 397 ELA 399
+LA
Sbjct: 434 QLA 436
>gi|449893780|ref|ZP_21788926.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SF12]
gi|449255685|gb|EMC53530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SF12]
Length = 451
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 189/380 (49%), Gaps = 37/380 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVVTEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTEKDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q + +I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR---RMATNGDAIVL 375
+ + +I G S + V G++ N KD R + A+ GD ++L
Sbjct: 367 PDIKGLKKMIILGESAPRLKHAAVQAGVT-----YLNAKDVAQATRIAFQEASPGDVVLL 421
Query: 376 SPGCASFDEFRNFEHRGMVF 395
SP AS+D ++NFE RG F
Sbjct: 422 SPANASWDMYKNFEVRGDEF 441
>gi|417321317|ref|ZP_12107857.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
parahaemolyticus 10329]
gi|328471997|gb|EGF42874.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
parahaemolyticus 10329]
Length = 437
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 114/393 (29%), Positives = 178/393 (45%), Gaps = 55/393 (13%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ +L G V+ +++ A + + + +A+TG+NGKSTV G M G+ VGGN
Sbjct: 85 IQTVLAKGTPVVGDIELFAWAVNKPV--VAITGSNGKSTVTDLTGVMAKAAGLTVGVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P AL + + V+E+SS+Q+E + + LNL+ DH++R++
Sbjct: 143 IGVP---------ALELLEQDADLYVLELSSFQLETTSSLKL-NAAAFLNLSEDHMDRYE 192
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
M +Y K +F N +L ++ +Q ++ P V ++ +
Sbjct: 193 GMADYRAAKLRIFD---NAELAVVNRDDQETYPEVE-----------MPVVTFGSDEQAY 238
Query: 198 SFEVPAVGVVSQLQLH--------NMKVMGRHNYHNAAV--AALSVLGLDIGVDVEALNS 247
EV G + L H +K++G+HN NA V A L G+D + AL +
Sbjct: 239 GLEVD--GSRTWLLDHGQRVIASDELKLVGKHNLANALVVLALLKAAGVDYHNALNALKN 296
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILLGGQAKVL 306
+ HR Q+V D +GV WV+DSKATN+ +T L L+ K +L+GG K
Sbjct: 297 YTGL----THRCQVV-ADNRGVKWVNDSKATNIASTMAALSGLESTGKLYLLVGGVGK-- 349
Query: 307 NGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRM 366
G + + + LN C FG G L M+D +
Sbjct: 350 -GADFTPLKPIFATLNLQLCC--FGLDGDDFMP------LHESAIRFNTMEDVIQQISSQ 400
Query: 367 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
+GD ++LSP CASFD+F NF RG F LA
Sbjct: 401 LKSGDMVMLSPACASFDQFDNFMARGDAFAVLA 433
>gi|400290796|ref|ZP_10792823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
ratti FA-1 = DSM 20564]
gi|399921587|gb|EJN94404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
ratti FA-1 = DSM 20564]
Length = 451
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 179/375 (47%), Gaps = 39/375 (10%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P SE A
Sbjct: 99 VITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQPALLSGNIGYPASEVAQ 156
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
++ V+E+SS+Q+ + + F P ++V+ NL P H++ H + +NY K
Sbjct: 157 SAVST-------DTLVMELSSFQL-MGTEKFHPQIAVITNLMPTHIDYHGSFENYVEAKW 208
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTASFEVPAV 204
++ +M+ +L F NQ L + + R N + K+D E F+ AV
Sbjct: 209 NIQKNMMAADTIILNF-NQELAKDLAA-RTNAKVVPFSTKEKVDGAYLEDGMLCFKGQAV 266
Query: 205 GVVSQLQLHNMKVMGRHNYHNA----AVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
++ + V G HN NA AVA LS GV A+ T+ HR+Q
Sbjct: 267 -----MKADELGVPGSHNIENALATIAVAKLS------GVSDGAIKETLAHFGGVKHRLQ 315
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP 320
+ ++ GV + +DSK+TN+ AT L K +++ GG + N F+ LI
Sbjct: 316 YLG-EVSGVKFYNDSKSTNILATQKALSGFDNPKVILIAGGLDR------GNEFDDLIPD 368
Query: 321 LNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 380
L + ++ G S + + + + ++ A A A +GD ++LSP A
Sbjct: 369 LVGLKKMVILGESAPRVKRAA--DKAKVAYLEAEDVAGAAKLAFESAESGDIVLLSPANA 426
Query: 381 SFDEFRNFEHRGMVF 395
S+D ++NFE RG F
Sbjct: 427 SWDMYKNFEVRGDEF 441
>gi|340399080|ref|YP_004728105.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
salivarius CCHSS3]
gi|338743073|emb|CCB93581.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
(UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
(D-glutamic acid-adding enzyme) [Streptococcus
salivarius CCHSS3]
Length = 450
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 113/385 (29%), Positives = 181/385 (47%), Gaps = 39/385 (10%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+A L+ G V +E++ A V I+ +TG+NGK+T T + +LNH G + GN
Sbjct: 89 VARALEKGIPVWTEVELAYLV--SEAPIIGITGSNGKTTTTTMIADVLNHGGKSGVLSGN 146
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P SE A A + V+E+SS+Q+ + F P ++V+ NL P H++ H
Sbjct: 147 IGFPASEVAQSVTAQ-------DILVMELSSFQL-MGIDSFHPHIAVITNLMPTHIDYHG 198
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKT 196
+ + Y K ++ + M +L F NQ L + + A + F V K+D
Sbjct: 199 SFEEYVAAKWNIQNQMTADDFVVLNF-NQDLAKELATQ--TKAQVVPFSTVEKVD----G 251
Query: 197 ASFEVPAVGVVSQL--QLHNMKVMGRHNYHNA----AVAALSVLGLDIGVDVEALNSTIE 250
A E + +L Q + V G HN NA AVA LS G+ +A+ T+
Sbjct: 252 AYLENGGLYFKGELVMQADEIGVPGSHNVENALATIAVAKLS------GISNQAIKETLA 305
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
HR+Q V I V + +DSK+TN+ AT L K +++ GG +
Sbjct: 306 SFGGVKHRLQFVDT-INEVRFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------ 358
Query: 311 SNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 370
N F++LI + + ++ G S + + G++ ++ DA A A+ G
Sbjct: 359 GNEFDELIPDITGLKKMVILGESAPRVKRAADKAGVT--YLDAKDVADATRIAFDQASAG 416
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVF 395
D ++LSP AS+D ++NFE RG F
Sbjct: 417 DVVLLSPANASWDMYKNFEVRGDEF 441
>gi|167764158|ref|ZP_02436285.1| hypothetical protein BACSTE_02542 [Bacteroides stercoris ATCC
43183]
gi|167698274|gb|EDS14853.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
stercoris ATCC 43183]
Length = 444
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 108/393 (27%), Positives = 191/393 (48%), Gaps = 51/393 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + + K++ +TG+NGK+T + + + G+ + GN+GN
Sbjct: 82 LKEKGISIISEIEFAGRYT--NAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGN 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL + K V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAMEKHDYYVIELSSFQLD--NMYKFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+ Y K + + + P + L + +K H + A + G E
Sbjct: 190 MQKYVDAKFRITQNQTPEDAFIYWNDDPIIRRELEKHGLKAHPYPFAAVKE-DGAIAYVE 248
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTIEIL 252
P + ++ + + G HN +N+ A +S L G+ E + +
Sbjct: 249 DGEVEINEP---IAFNMEQEELALRGTHNLYNSLAAGISANLA---GIRKEDIRKALSDF 302
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
+ HR++ V ++GV +++DSKATN+ + L + K V++LGG+ K N
Sbjct: 303 KGVEHRLEKVAT-VRGVQFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK------GN 354
Query: 313 GFEKLIEPLNHHRCVITFGYSGVLIWKTLVN-------NGLSIPCFAV-ANMKDAVNHAR 364
+ + IE L +C L++ L N + L +P V MKDAV+ A
Sbjct: 355 DYTE-IEDLVRSKC-------SALVYLGLHNEKLHGFFDRLGLPVADVQTGMKDAVDAAF 406
Query: 365 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
++A G+ ++LSP CASFD F+++E RG F++
Sbjct: 407 KLARKGETVLLSPCCASFDLFKSYEDRGDQFKK 439
>gi|397169231|ref|ZP_10492666.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alishewanella
aestuarii B11]
gi|396089311|gb|EJI86886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alishewanella
aestuarii B11]
Length = 443
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 103/354 (29%), Positives = 168/354 (47%), Gaps = 32/354 (9%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV ML GI+A GN+G P+ +A ++P +V V+
Sbjct: 110 VVAITGSNGKSTVTRLTEAMLQQSGIKALAAGNIGLPVLDAL--------AEPSAEVYVL 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E + + LN++ DHL+R+ + +YA K ++ H + L +
Sbjct: 162 ELSSFQLETTDSLQL-VAAANLNVSADHLDRYNDLADYAAAKQRIYQH---SALAVYNAE 217
Query: 165 NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYH 224
+ A G R L+ G I + V + L + + + G+HN
Sbjct: 218 DNLTLPATSGPRLGLSLQDTGSGYGIVQHQQQEYLLVAGAPL---LPVSELSLFGKHNQF 274
Query: 225 NAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATC 284
NA AA L G EA+ +T++ R HR ++V + GV WV+DSK TN+ AT
Sbjct: 275 NALAAAALA--LAAGASREAIATTLKTFRGLAHRCELVL-ERNGVRWVNDSKGTNIGATL 331
Query: 285 TGLMDLKGH---KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTL 341
L L+ K +++ GG AK G + + ++ + +IT G G + L
Sbjct: 332 AALAGLRSSVKGKLILIAGGDAK---GADLTELQPALQ--RDVQQLITLGQDGPALAALL 386
Query: 342 VNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
++ V ++ AV A + GD ++LSP CAS D F+++ RG F
Sbjct: 387 PDS------IQVKTLQQAVKTAASLTKPGDMVLLSPACASLDMFKSYADRGEQF 434
>gi|365133183|ref|ZP_09342567.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Subdoligranulum sp.
4_3_54A2FAA]
gi|363615993|gb|EHL67447.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Subdoligranulum sp.
4_3_54A2FAA]
Length = 464
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 113/397 (28%), Positives = 181/397 (45%), Gaps = 33/397 (8%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
F+ L ++G V SE++ ++ P KI+AVTG++GK+T T + ++L G
Sbjct: 88 FEYYTPELVAAREAGAEVTSEMELFFRLCP--CKIVAVTGSDGKTTTTTLIAKILEAAGY 145
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTP 130
+GGNLG L + + + VAVVE+SS+Q+ + P V+VV N+TP
Sbjct: 146 TVHLGGNLGRAL-------LPVVDAIAATDVAVVELSSFQLISMRQ--SPEVAVVTNVTP 196
Query: 131 DHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKI 190
+HL+ HK M+ Y K ++ + +L + N+ + + W V+
Sbjct: 197 NHLDHHKDMQEYIDAKRNILLYQKPDGKAVLGYENEVTRAMAADVKGSCRWFTRKSVVEN 256
Query: 191 DTEAKTASFEVPAVG--VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
+ A V ++ ++ + G HN N A +V G+ +V + +
Sbjct: 257 GGFLRADGMLCMAENGRVTPIVRREDVALRGEHNLENLLAAFTAVWGM---AEVSTMAAV 313
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG 308
+ HR++ V R + GV W +DS AT+ GL K +I+ GG K ++
Sbjct: 314 AKSFAGVEHRIEPV-RTLNGVQWFNDSIATSPTRVIAGLRAFD-QKLIIIAGGSDKGIS- 370
Query: 309 QESNGFEKLI-EPLNHHRCVITFGYSGVLIWKTL------VNNGLSIPCFAVANMKDAVN 361
F L E + H + +I G + I + +GL I A+M AV
Sbjct: 371 -----FAPLAPELIAHVKTLILTGATAQKIEDAVKADPGFAESGLVI--LRAADMPQAVE 423
Query: 362 HARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
AR A GD + LSP CASFD + NFE RG ++EL
Sbjct: 424 MARAAAQPGDIVSLSPACASFDSYPNFEARGRHYKEL 460
>gi|384159497|ref|YP_005541570.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
amyloliquefaciens TA208]
gi|384164066|ref|YP_005545445.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus
amyloliquefaciens LL3]
gi|384168548|ref|YP_005549926.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Bacillus
amyloliquefaciens XH7]
gi|328553585|gb|AEB24077.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
amyloliquefaciens TA208]
gi|328911621|gb|AEB63217.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus
amyloliquefaciens LL3]
gi|341827827|gb|AEK89078.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Bacillus
amyloliquefaciens XH7]
Length = 451
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 182/377 (48%), Gaps = 32/377 (8%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V +E++ A + + K + +TG+NGK+T T V +ML I+A + GN+G
Sbjct: 95 RRGIPVWTEIELAYYIT--NAKFIGITGSNGKTTTTTLVYEMLKADSIKALIAGNIGTVA 152
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
SE A+H + V E+SS+Q+ + F P + ++LN+ HL+ H + +NY
Sbjct: 153 SEVAYHA-------DGDEWIVTELSSFQL-MGTHAFRPEIGLILNVFDAHLDYHHSRENY 204
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K ++ H + + ++ ++ + +G + G P + E + +F
Sbjct: 205 EKAKQKVYLHQLESDTAIVNQSDETVVRLAEGGK-----AGTVP-FSVSQELSSGAFIKD 258
Query: 203 AV---GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ G + L + ++ + G HN N + A G +A+ + HR+
Sbjct: 259 GMLMFGDEAILPVDDIVLPGAHNLEN--ILAAVAAAKTAGASNKAIQKVLTSFTGVKHRL 316
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319
Q V IQ + +DSKATN+ AT L K VILL G NGF+ L
Sbjct: 317 QYVTA-IQNRKFYNDSKATNILATSKALSAFKA--PVILLAGGL-----DRGNGFDDLKP 368
Query: 320 PLNHHRCVITFGYSGVLIWKTLVNNGLSIP-CFAVANMKDAVNHARRMATNGDAIVLSPG 378
+++ + V+TFG + I K + N L I V N++ AV+ A ++ GD I+LSP
Sbjct: 369 YMDNVKAVLTFGQTAPKIEK--LGNELGIQHVKRVDNVEQAVSAAFALSNEGDVILLSPA 426
Query: 379 CASFDEFRNFEHRGMVF 395
CAS+D+F+ FE RG +F
Sbjct: 427 CASWDQFKTFEERGDMF 443
>gi|90580226|ref|ZP_01236033.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Photobacterium angustum S14]
gi|90438528|gb|EAS63712.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
angustum S14]
Length = 446
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 124/411 (30%), Positives = 200/411 (48%), Gaps = 54/411 (13%)
Query: 5 WLFLLEFQLKATGLACLL-------QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + G+A ++G ++ +++ A+ + + ++A+TG+NGKSTV
Sbjct: 65 WLLSADLIVASPGIALATPELVLAAEAGVEIIGDIELFAREVDK--PVVAITGSNGKSTV 122
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
+ VG+M GI VGGN+G AA +A + + V+E+SS+Q+E
Sbjct: 123 TSLVGEMAKEAGINVGVGGNIGF----AALDMLA-----QQHSLYVLELSSFQLETTTSL 173
Query: 118 FCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR 176
T +V LNL+ DH++R+ + Y+ K +F H KL + F L A K +
Sbjct: 174 EL-TAAVYLNLSEDHMDRYPGGLAQYSQAKMRIFDH---AKLAV--FNRDDL--ATKPTQ 225
Query: 177 FNLAWIGAFPGVKIDTEAKTASF----EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALS 232
F+ GA D + E AV + + + ++ ++GRHN N A
Sbjct: 226 FS----GAMTSFGFDDQDYGIVLVNGKEWLAVNGEAVMAVADIALVGRHNVANCLAALAL 281
Query: 233 VLGLDIGVDVEALNSTIEILRTPPHRMQI-VHRDIQGVTWVDDSKATNLEATCTGL--MD 289
G+ +A ++ HR Q+ V+R GV WV+DSKATNL +T L +
Sbjct: 282 ADA--AGIPRDAACRAMQRYTGLAHRCQLAVNR--HGVRWVNDSKATNLASTLAALNGLQ 337
Query: 290 LKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIP 349
L+G K +L+GG +K G E + + ++ LN + +FG L + +V+N +S
Sbjct: 338 LEG-KLHLLMGGDSK---GAEFSELKPVLADLNVQ--LYSFGRDRHL-FNDVVDNAIS-- 388
Query: 350 CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAF 400
V M DA+ R +GD ++LSP CAS+D+F NF RG F E A
Sbjct: 389 ---VETMSDAMVCISRTVQSGDMVLLSPACASWDQFANFMARGDAFVEQAI 436
>gi|126663232|ref|ZP_01734230.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Flavobacteria bacterium BAL38]
gi|126624890|gb|EAZ95580.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Flavobacteria bacterium BAL38]
Length = 444
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 115/405 (28%), Positives = 200/405 (49%), Gaps = 52/405 (12%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + LL+ V+SE++FA Q K + +TG+NGK+T +L G+
Sbjct: 74 KAPIVKKLLEKDIPVISEIEFAIQFT--QAKTVGITGSNGKTTTTLLTYHVLKEAGLNVG 131
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHL 133
+ GN+G A ++ K + V+E+SS+Q++ Y P ++++ N++PDHL
Sbjct: 132 LAGNIG--------KSFAWQVAENKHDIYVLELSSFQLDGVFNY-KPNIAIITNISPDHL 182
Query: 134 ERHKTMKNYALTKCHLFSHMVN-TKLGLLPFGNQH-------LNEAIKGHR--FNL---- 179
+R+ +Y+L F N T+ L + N+ N IK ++ F+L
Sbjct: 183 DRYNY--DYSLYINSKFRITKNQTEADYLIYDNEDEAIKNWLKNNTIKANKVPFSLTTKP 240
Query: 180 -AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI 238
A G +++ +F +P +++L L G+HN NA +AA +V L +
Sbjct: 241 EAEGGFLDENNMNSTINNDTFTMP----INELALE-----GKHNIKNA-MAATAVAQL-L 289
Query: 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL 298
+ + + ++ + HR++ V + IQGV +++DSKATN+ + L D V +
Sbjct: 290 NIRKQTIRESLTNFQGAEHRLEKVLK-IQGVQYINDSKATNVNSVFYAL-DSMTTPTVWI 347
Query: 299 LGGQAKVLNGQESNGFEKLIEPLNHHR--CVITFGYSGVLIWKTLVNNGLSIPCFAVANM 356
+GG K N +++L+ PL + ++ G I T NN + I +M
Sbjct: 348 VGGVDK------GNDYDELM-PLVREKVKAIVCLGVDNTKISNTF-NNVVDI-MVETTSM 398
Query: 357 KDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 401
+AV A+R+A GD+++LSP CASFD F N+E RG F++ ++
Sbjct: 399 AEAVQIAQRLAEKGDSVLLSPACASFDLFENYEDRGKQFKQAIYN 443
>gi|339302001|ref|ZP_08651074.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
agalactiae ATCC 13813]
gi|319744582|gb|EFV96935.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
agalactiae ATCC 13813]
Length = 455
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 101/372 (27%), Positives = 190/372 (51%), Gaps = 33/372 (8%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A V +++ +TG+NGK+T T + ++LN G + GN+G P SE
Sbjct: 103 VLTEVELAYLV--SESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNIGFPASEVV- 159
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ + V+E+SS+Q+ + K F P ++V+ NL P HL+ H + ++Y K
Sbjct: 160 ------QAADDKDILVMELSSFQL-MGVKEFRPHIAVITNLMPTHLDYHGSFEDYVAAKW 212
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTASFEVPA 203
++ + M ++ +L F NQ +++ + + A I F K+D + K ++
Sbjct: 213 NIQNQMSSSDFLVLNF-NQGISKELA--KTTKATIVPFSTTEKVDGAYVQDKQLFYKGEN 269
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
+ + + ++ V G HN NA +A ++V L G+ + + T+ HR+Q +
Sbjct: 270 I-----MSVDDIGVPGSHNVENA-LATIAVAKL-AGISNQVIRETLSNFGGVKHRLQSLG 322
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
+ + G+++ +DSK+TN+ AT L K +++ GG + N F++LI +
Sbjct: 323 K-VHGISFYNDSKSTNILATQKALSGFDNTKVILIAGGLDR------GNEFDELIPDITG 375
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 383
+ ++ G S + + G++ +++DAV+ A +A GD I+LSP AS+D
Sbjct: 376 LKHMVVLGESASRVKRAAQKAGVTYS--DALDVRDAVHKAYEVAQQGDVILLSPANASWD 433
Query: 384 EFRNFEHRGMVF 395
++NFE RG F
Sbjct: 434 MYKNFEVRGDEF 445
>gi|77408374|ref|ZP_00785114.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
agalactiae COH1]
gi|417004691|ref|ZP_11943330.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
agalactiae FSL S3-026]
gi|421147581|ref|ZP_15607266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
agalactiae GB00112]
gi|77172977|gb|EAO76106.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
agalactiae COH1]
gi|341577673|gb|EGS28080.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
agalactiae FSL S3-026]
gi|401685701|gb|EJS81696.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
agalactiae GB00112]
Length = 451
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 101/372 (27%), Positives = 190/372 (51%), Gaps = 33/372 (8%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A V +++ +TG+NGK+T T + ++LN G + GN+G P SE
Sbjct: 99 VLTEVELAYLV--SESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNIGFPASEVV- 155
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ + V+E+SS+Q+ + K F P ++V+ NL P HL+ H + ++Y K
Sbjct: 156 ------QAADDKDILVMELSSFQL-MGVKEFRPHIAVITNLMPTHLDYHGSFEDYVAAKW 208
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTASFEVPA 203
++ + M ++ +L F NQ +++ + + A I F K+D + K ++
Sbjct: 209 NIQNQMSSSDFLVLNF-NQGISKELA--KTTKATIVPFSTTEKVDGAYVQDKQLFYKGEN 265
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
+ + + ++ V G HN NA +A ++V L G+ + + T+ HR+Q +
Sbjct: 266 I-----MSVDDIGVPGSHNVENA-LATIAVAKL-AGISNQVIRETLSNFGGVKHRLQSLG 318
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
+ + G+++ +DSK+TN+ AT L K +++ GG + N F++LI +
Sbjct: 319 K-VHGISFYNDSKSTNILATQKALSGFDNTKVILIAGGLDR------GNEFDELIPDITG 371
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 383
+ ++ G S + + G++ +++DAV+ A +A GD I+LSP AS+D
Sbjct: 372 LKHMVVLGESASRVKRAAQKAGVTYS--DALDVRDAVHKAYEVAQQGDVILLSPANASWD 429
Query: 384 EFRNFEHRGMVF 395
++NFE RG F
Sbjct: 430 MYKNFEVRGDEF 441
>gi|444380297|ref|ZP_21179436.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterovibrio sp.
AK16]
gi|443675566|gb|ELT82289.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterovibrio sp.
AK16]
Length = 450
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 119/373 (31%), Positives = 182/373 (48%), Gaps = 41/373 (10%)
Query: 37 QVIPRSIK--ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPS 94
++ R +K ++ +TG+NGKSTV + VG+M GI VGGN+G AA +A
Sbjct: 99 ELFARDVKAPVIGITGSNGKSTVTSLVGEMAKAAGINVGVGGNIGF----AALDMLA--- 151
Query: 95 SKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV 154
+ ++ V+E+SS+Q+E + +V LNL+ DH++R++ M +Y K +F
Sbjct: 152 --NEHELYVLELSSFQLETTSSLNLE-AAVFLNLSEDHMDRYEGMDDYRDAKLRIFDQ-- 206
Query: 155 NTKLGLLPFGN-QHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLH 213
TKL + + Q N KG G G TE A + V + +
Sbjct: 207 -TKLSVWNQDDLQTKNTQTKGDNVPAISFGFTSGEYTLTEKDGAEWLTAKGEPV--MAVS 263
Query: 214 NMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTW 271
++ ++GRHN N AA+A +GV EA + R PHR Q V GV W
Sbjct: 264 DIALVGRHNVANCLAAMAQADA----VGVSREAQCQAMREYRGLPHRCQQVIEH-NGVLW 318
Query: 272 VDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITF 330
V+DSKATN +T L L+ + +L+GG K G + + + ++ LN + +
Sbjct: 319 VNDSKATNPASTEAALDGLQLAGRLHLLVGGDGK---GADFSSLKPILGKLN--VTLYCY 373
Query: 331 GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEH 390
G G + LV + + I M++A++ A A GD ++LSP CASFD+F NF
Sbjct: 374 GRDG-HAFTNLVESPVVIET-----MQEAMDIAASTAKPGDMVLLSPACASFDQFTNFMV 427
Query: 391 RGMVF----QELA 399
RG F QE+A
Sbjct: 428 RGDTFAAYAQEIA 440
>gi|187251915|ref|YP_001876397.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Elusimicrobium
minutum Pei191]
gi|226711909|sp|B2KEW4.1|MURD_ELUMP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|186972075|gb|ACC99060.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Elusimicrobium
minutum Pei191]
Length = 452
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 186/379 (49%), Gaps = 33/379 (8%)
Query: 29 MSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHL------GIEAFVGGNLGNPL 82
SE++ + +P+ +I AVTGTNGK+T + ++L F GN+G PL
Sbjct: 94 FSEIEISISFLPKGCRIFAVTGTNGKTTTTMLLSEILKQFIKNKEFNKNVFTVGNIGCPL 153
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+E S + + V+EVSSYQ+E + YF P + +LN+TPDH++ H + K Y
Sbjct: 154 AEVM-------SEIKQHDLIVMEVSSYQLE-DSSYFKPYAATILNITPDHIDHHGSFKKY 205
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K +F + ++ +++ +A K + L P +I + ++
Sbjct: 206 LDAKSKIFKFQTQKDIAVINSADKNCLKAAKNIKSKLYGFATTPLQQIRSHV---FYDGD 262
Query: 203 AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
+ + ++ K+ G HN NA A+L L GVD +++ +T HR++++
Sbjct: 263 ELVFSAGERISPPKLPGIHNVENAMAASLLALAA--GVDSQSIQQAFNKFKTVEHRIELL 320
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDL-KGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
+G+++++DSKATN+++T L + G K ++LGGQ K + + L+ PL
Sbjct: 321 GIK-KGISFINDSKATNIDSTIIALRSMPDGKKTWLILGGQDK------GSPYGVLL-PL 372
Query: 322 NHHRC--VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 379
+C V+ G + I K L C + AV +A A D I+LSP C
Sbjct: 373 LETKCKKVLLVGQAAAKIKKDLPGYKYFNVC---GTIDKAVEYAFNNAQKEDIILLSPAC 429
Query: 380 ASFDEFRNFEHRGMVFQEL 398
ASFD+F NFE RG F+++
Sbjct: 430 ASFDQFNNFEERGKFFKQI 448
>gi|339493060|ref|YP_004713353.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
stutzeri ATCC 17588 = LMG 11199]
gi|386019669|ref|YP_005937693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
stutzeri DSM 4166]
gi|327479641|gb|AEA82951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
stutzeri DSM 4166]
gi|338800432|gb|AEJ04264.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
stutzeri ATCC 17588 = LMG 11199]
Length = 447
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 111/362 (30%), Positives = 170/362 (46%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+N KSTV T VG+M G VGGNLG P AL + + V+
Sbjct: 110 IVAITGSNAKSTVTTLVGEMAAAAGRTVAVGGNLGTP---------ALDLLADEVDLYVL 160
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E + V+ LN++ DH++R+ + Y K +F +
Sbjct: 161 ELSSFQLET-TEQLNAEVATCLNISEDHMDRYSGLPAYHQAKHRIFRGARQVVVNR---- 215
Query: 165 NQHLNEAIKGHRFNLAWIG----AFPGVKIDTEA--KTASFEVPAVGVVSQLQLHNMKVM 218
+ L+ + G G F G + E K +F+ A+ + + +K+
Sbjct: 216 DDRLSRPLVGEDVPTWTFGLGKPDFKGFGLFEEKGEKYLAFQFEAL-----MPVRELKMR 270
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A LG +G+ + T+ PHR Q V + GV++ DDSKAT
Sbjct: 271 GAHNQSNALAA--LALGHAVGLPFGPMLDTLRRFTGLPHRCQWVG-ERAGVSYYDDSKAT 327
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D+ G K V++ GG K + F L P+ + R V+ G
Sbjct: 328 NVGAALAAIEGLGADIDG-KLVLIAGGDGKGAD------FSALRAPVARYCRAVVLLGRD 380
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
+ + L G + VA++++AV A A +GDA++LSP CAS D F+NFE RG
Sbjct: 381 APRLAEAL---GEATVLIRVASLEEAVQRAAECAESGDAVLLSPACASLDMFKNFEERGR 437
Query: 394 VF 395
+F
Sbjct: 438 LF 439
>gi|323486714|ref|ZP_08092035.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
symbiosum WAL-14163]
gi|323692147|ref|ZP_08106390.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
symbiosum WAL-14673]
gi|355623454|ref|ZP_09047199.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium sp.
7_3_54FAA]
gi|323400095|gb|EGA92472.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
symbiosum WAL-14163]
gi|323503721|gb|EGB19540.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
symbiosum WAL-14673]
gi|354822332|gb|EHF06694.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium sp.
7_3_54FAA]
Length = 448
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 110/387 (28%), Positives = 187/387 (48%), Gaps = 23/387 (5%)
Query: 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
L A + L ++G + SE+ A K+ A+TGTNGK+T G+++
Sbjct: 78 LDAPFVTVLDEAGVPIWSEIQLAYHCAKG--KLAAITGTNGKTTTTALTGEIMRSFYDSV 135
Query: 73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
FV GN+G P + H + S V V EVSS+Q+E F P VS +LN+TPDH
Sbjct: 136 FVVGNIGEPYTA---HALETEES----SVTVAEVSSFQLETIMD-FRPNVSAILNITPDH 187
Query: 133 LERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT 192
L+RHKTM+ Y K + + + +L + + L E + + N+ + + +K
Sbjct: 188 LDRHKTMECYTQVKESITKNQKDGDTCVLNYDDTVLREFGETLKINVVYFSSREKLKKGY 247
Query: 193 EAKTASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
+ V+++ + +K++GRHN+ N V A + +++ V +E + I
Sbjct: 248 YLEDGKIVYNDGSKVTEIVDISELKLLGRHNHEN--VMAAVAISMNMDVPLEKIQEVIRK 305
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQES 311
HR++ V GV + +DSK TN +A + + G +++ GG K
Sbjct: 306 FEAVEHRIEFVTERF-GVKYYNDSKGTNPDAAMQAIKAMPG-PTILIAGGYDK------H 357
Query: 312 NGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 370
+ F++ IE + R ++ G + I + +G + +A ++ +AV A G
Sbjct: 358 SEFDEWIESFDGKVRYLVLIGQTRDKIAECAKRHGFTDIMYA-EDLLEAVQVCASYANPG 416
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVFQE 397
D ++LSP CAS+ +F+NFE RG F+E
Sbjct: 417 DNVLLSPACASWGQFKNFEERGTKFKE 443
>gi|417780413|ref|ZP_12428175.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
weilii str. 2006001853]
gi|410779455|gb|EKR64071.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
weilii str. 2006001853]
Length = 463
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 121/394 (30%), Positives = 178/394 (45%), Gaps = 81/394 (20%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
KI+ VTGT+GKST + V +L + GGNLG P + I+L AV
Sbjct: 103 KIIGVTGTDGKSTTTSLVSHLLKKDFSDLKEGGNLGVPFTSFCKESISL---------AV 153
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHL-------FSHMVNT 156
+E+SSYQ+E VSV LNL DHLERHKTM+NY K + S +V+
Sbjct: 154 LELSSYQLEDSFPLHL-NVSVFLNLAADHLERHKTMENYFRAKLKIADLSNRDHSLIVSE 212
Query: 157 KL------------GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K+ LL FG +EA+ +E +T+ F V
Sbjct: 213 KIREKILNSSSVRCKLLSFGRTTTSEAVLDEN--------------SSEIRTSKF----V 254
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+S+ L G HN N A A L+ IG E++ S I + + PHR QI
Sbjct: 255 YDISRFYLP-----GTHNRENLAAAILASEA--IGGKPESIQSQIPLFKGLPHRFQIAG- 306
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
+ QG+++++DSK+TNL + G+ K + ++LGG+ K + + F L+ +
Sbjct: 307 ERQGISFINDSKSTNLHSMLAGMSTWKNLDQTCLILGGRPKQEDPKPLYDF--LMRGIG- 363
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR----------------MA 367
V G + +W+ + + F+V N+ DA + ++
Sbjct: 364 --SVFLIGEARS-VWEIGIRKVVGDRLFSVENLNDAFDLFKKGNVISKTVYGNVLKRIRL 420
Query: 368 TNG---DAIVLSPGCASFDEFRNFEHRGMVFQEL 398
NG AIV SP CASFD+++NFE RG F L
Sbjct: 421 PNGAEIGAIVFSPACASFDQYKNFEERGNHFLSL 454
>gi|380693288|ref|ZP_09858147.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides faecis
MAJ27]
Length = 444
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 105/390 (26%), Positives = 189/390 (48%), Gaps = 45/390 (11%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G ++SE++F + K++ +TG+NGK+T + + + + + GN+G
Sbjct: 82 LKAQGTPIISEIEFTGRYT--DAKMICITGSNGKTTTTSLIYHIFKSADLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEEHHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHL-NEAIKGHRFNLAWI---GAFPGVKI 190
M+NY K + + + P Q L +K H + A + GA V+
Sbjct: 190 MQNYIDAKFRITQNQTTDDAFIFWNDDPIIKQELAKHGLKAHLYPFAAMKEDGAIAYVE- 248
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTI 249
D E K + ++ + + G+HN +N+ A +S L G+ E + +
Sbjct: 249 DHEVKITE------PIAFNMEQEELALTGQHNLYNSLAAGISANLA---GITKENIRKAL 299
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
+ HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K
Sbjct: 300 SDFKGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK----- 352
Query: 310 ESNGFEKLIEPLNHHRC--VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA 367
N + + IE L +C ++ G + + GL + MKDAV A ++A
Sbjct: 353 -GNDYTE-IEDLVREKCSALVYLGLHNEKLHEFFDRFGLPVADVQTG-MKDAVEAAYKLA 409
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
G+ ++LSP CASFD F+++E RG F++
Sbjct: 410 KKGETVLLSPCCASFDLFKSYEDRGDQFKK 439
>gi|350530213|ref|ZP_08909154.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
rotiferianus DAT722]
Length = 437
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 118/398 (29%), Positives = 177/398 (44%), Gaps = 65/398 (16%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ +L G +V+ +++ A ++ + + +A+TG+NGKSTV G M G+ VGGN
Sbjct: 85 IQAVLAKGTQVVGDIELFAWIVDKPV--IAITGSNGKSTVTDLTGVMAKAAGLTVGVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P AL + + V+E+SS+Q+E + + LNL+ DH++R+
Sbjct: 143 IGVP---------ALDLLEQDADLYVLELSSFQLETTSSLKLK-AAAFLNLSEDHMDRYD 192
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
M +Y K +F N +L ++ +Q FP V D T
Sbjct: 193 GMADYRQAKLRIFD---NAELAIVNRDDQE----------------TFPDV--DMPIVTF 231
Query: 198 SFEVPAVGVVSQLQL-----HNMKVM--------GRHNYHNAAV--AALSVLGLDIGVDV 242
+ A G+ S Q H +V+ G+HN NA V A L G+D
Sbjct: 232 GCDDQAYGLESDGQRTWLLDHGQRVIASDELMLVGKHNLANALVVLALLKAAGVDY---Y 288
Query: 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILLGG 301
ALN+ ++ HR Q+V D +GV WV+DSKATN+ +T L L+ K +L+GG
Sbjct: 289 NALNA-LKTYTGLTHRCQVV-ADNRGVKWVNDSKATNIASTMAALSGLESTGKLYLLVGG 346
Query: 302 QAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVN 361
K G + + + LN C FG G L M+D +
Sbjct: 347 VGK---GADFTPLKPIFATLNLQLCC--FGVDGDEFMP------LHESATRFDTMEDVIQ 395
Query: 362 HARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
GD ++LSP CASFD+F NF RG F LA
Sbjct: 396 QISSQLKTGDMVMLSPACASFDQFDNFMARGDAFAALA 433
>gi|445375284|ref|ZP_21426475.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
thermophilus MTCC 5460]
gi|445389770|ref|ZP_21428191.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
thermophilus MTCC 5461]
gi|444750258|gb|ELW75085.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
thermophilus MTCC 5461]
gi|444750366|gb|ELW75184.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
thermophilus MTCC 5460]
Length = 450
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 107/358 (29%), Positives = 171/358 (47%), Gaps = 37/358 (10%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+ +TG+NGK+T T + +LNH G + GN+G P SE A S V+
Sbjct: 114 IIGITGSNGKTTTTTMIADVLNHGGKSGVLSGNIGFPASEVA-------QSVTNQDTLVM 166
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+ + + F P ++V+ NL P H++ H + + Y K ++ + M + +L F
Sbjct: 167 ELSSFQL-MGIESFHPHIAVITNLMPTHIDYHGSFEEYIAAKWNIQNEMTSDDFIILNF- 224
Query: 165 NQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKTASFEVPAVGVVSQLQLH--NMKVMGRH 221
NQ L + + A + F V K+D A E + +L +H + V G H
Sbjct: 225 NQDLAKELATQTN--AQVVPFSTVEKVD----GAYLENGGLYFKGELLMHADELGVPGSH 278
Query: 222 NYHNA----AVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
N NA AVA LS GV +A+ T+ HR+Q V I V + +DSK+
Sbjct: 279 NVENALATIAVAKLS------GVSNQAIKETLSSFGGVKHRLQFVDT-IDDVKFYNDSKS 331
Query: 278 TNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLI 337
TN+ AT L K +++ GG + N F++LI + + ++ G S +
Sbjct: 332 TNILATQKALSGFDNSKVILIAGGLDR------GNEFDELIPDITGLKKMVILGESAPRV 385
Query: 338 WKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
+ G++ ++ DA A A+ GD ++LSP AS+D ++NFE RG F
Sbjct: 386 KRAADKAGVT--YLDAKDVADATRIAFEQASAGDVVLLSPANASWDMYKNFEVRGDEF 441
>gi|399526405|ref|ZP_10766184.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces sp.
ICM39]
gi|398363023|gb|EJN46673.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces sp.
ICM39]
Length = 486
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 171/376 (45%), Gaps = 49/376 (13%)
Query: 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
L VTGTNGK+T V +GQ+L G++ GN+G P++ A +V VE
Sbjct: 120 LTVTGTNGKTTTVGMLGQILRSAGVKVEEVGNIGTPITRAI---------DSDAEVFAVE 170
Query: 106 VSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGN 165
+SS+Q+ + P S+ LN+ DHL+ H +++ YA K ++ + + K + P +
Sbjct: 171 LSSFQLHTAHT-VSPLASICLNVDADHLDWHGSVEAYAADKARVYENTI--KACIYPASD 227
Query: 166 QHLN------EAIKGHRF--------NLAWIGAFPGVKIDTE-AKTASFEVPAVGVVSQL 210
+ + + ++G R +++ G G+ +D + + + A+ VS L
Sbjct: 228 RRVEAMVENADVVEGARAIGLTLGAPSVSQFGIVEGLLVDRAFVENRARQAAALAHVSDL 287
Query: 211 QLHNMKVMGRHNYHNA-----AVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRD 265
G + H + A + L GV+ EA+ + R HR I+ R
Sbjct: 288 S-------GAYGAHPSAAVLCDALAAAALARAYGVEPEAVEEGLRSFRPAGHRRAIIARA 340
Query: 266 IQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHR 325
+TWVDDSKATN A L L + ++GG AK GQ+ +EP+ R
Sbjct: 341 AD-LTWVDDSKATNAHAARASLAGLPPRSAIWIVGGDAK---GQDFTELITQVEPI--LR 394
Query: 326 CVITFGYSGVLIWKTLVNNGLSIPCFAVANMKD----AVNHARRMATNGDAIVLSPGCAS 381
V+ G + + L +P V +D VN A ++ GD +VL+P CAS
Sbjct: 395 GVVVIGEDRSALVRALAEGAPQVPFVEVDGHEDWMFSVVNEAVALSMPGDTVVLAPACAS 454
Query: 382 FDEFRNFEHRGMVFQE 397
+D+F N+ RG F +
Sbjct: 455 WDQFDNYGQRGDAFAD 470
>gi|153214090|ref|ZP_01949224.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
1587]
gi|153826875|ref|ZP_01979542.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
MZO-2]
gi|124115516|gb|EAY34336.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
1587]
gi|149739291|gb|EDM53547.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
MZO-2]
Length = 440
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 112/371 (30%), Positives = 172/371 (46%), Gaps = 60/371 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G + N G++A VGGN+G P +L P ++ V+
Sbjct: 110 VIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP---------SLDLISPDVELYVL 160
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLG 159
E+SS+Q+E + + LNL+ DH++R++ M++Y K +F H +VN
Sbjct: 161 ELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQ 219
Query: 160 LLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM 215
P HL G +F+LA + EA A E +
Sbjct: 220 TFPDHAAHLQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------L 265
Query: 216 KVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
++GRHN N +A L G++ + ++AL S + HR Q+V D G+ WV+
Sbjct: 266 SLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVN 320
Query: 274 DSKATNLEATCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGY 332
DSKATN+ +T L LK + +L+GG K G + ++ L C FG
Sbjct: 321 DSKATNVASTLAALSGLKIEGQLYLLVGGVGK---GADFTPLAPVLATLPVQLC--CFGV 375
Query: 333 SGVLIWKTLVNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNF 388
G +P A D+ + R +GD ++LSP CASFD+F+NF
Sbjct: 376 DGHQF----------MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNF 425
Query: 389 EHRGMVFQELA 399
RG +F +LA
Sbjct: 426 MARGDIFAQLA 436
>gi|323352742|ref|ZP_08087712.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis VMC66]
gi|322121778|gb|EFX93524.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis VMC66]
Length = 459
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 105/372 (28%), Positives = 180/372 (48%), Gaps = 33/372 (8%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A + I+ +TG+NGK+T T + Q+L G + GN+G P S+ A
Sbjct: 108 VITEVELAYLI--SEAPIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSGNIGFPASQVAQ 165
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
SSK + V+E+SS+Q+ + + F P ++V+ NL P HL+ H +++ YA K
Sbjct: 166 TA----SSK---DMLVMELSSFQL-MGIEDFHPQIAVITNLMPTHLDYHGSVEEYAAAKW 217
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTASFEVPA 203
++ +M +L F E + A + F K+D E +F A
Sbjct: 218 NIQKNMTADDYLVLNFNQDWAKEMASQTQ---ATVVPFSTTEKVDGAYLEGDVLTFRGEA 274
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
+ +Q+ + V G HN N A+A ++V L G+D + + + HR+Q V
Sbjct: 275 I-----MQVAEIGVPGSHNVEN-ALATIAVAKLR-GIDNQTIKEVLSAFGGVKHRLQYVG 327
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
R + + + +DSK+TN+ AT L K +++ GG + N F++L+ L
Sbjct: 328 R-VNEIAFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELVPDLKG 380
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 383
+ ++ G S + + G+S +++DA + A A GD ++LSP AS+D
Sbjct: 381 LKKMVILGQSAARVKRAADQAGVS--YLDATDVRDAAHKAFAQADPGDIVLLSPANASWD 438
Query: 384 EFRNFEHRGMVF 395
+ NFE RG F
Sbjct: 439 MYSNFEVRGEEF 450
>gi|308173485|ref|YP_003920190.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus
amyloliquefaciens DSM 7]
gi|307606349|emb|CBI42720.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus
amyloliquefaciens DSM 7]
Length = 451
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 108/377 (28%), Positives = 182/377 (48%), Gaps = 32/377 (8%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V +E++ A + + K + +TG+NGK+T T + +ML I+ + GN+G
Sbjct: 95 RRGIPVWTEIELAYYIT--NAKFIGITGSNGKTTTTTLIYEMLKADSIKTLIAGNIGTVA 152
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
SE A+H + V E+SS+Q+ + F P + ++LN+ HL+ H + +NY
Sbjct: 153 SEVAYHA-------DGDEWIVTELSSFQL-MGTHAFRPEIGLILNVFDAHLDYHHSRENY 204
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K ++ H + + ++ ++ + KG + G P + E + +F
Sbjct: 205 EKAKQKVYLHQLESDTAIVNQNDETVVRLAKGGK-----AGTVP-FSVSQELSSGAFIKD 258
Query: 203 AV---GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ G + L + ++ + G HN N + A G +A+ + HR+
Sbjct: 259 GMLMFGDEAILPVDDIVLPGAHNLEN--ILAAVAAAKTAGASNKAIQKVLTSFTGVKHRL 316
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319
Q V IQ + +DSKATN+ AT L K VILL G NGF++L
Sbjct: 317 QYVTA-IQNRKFYNDSKATNILATSKALSAFKA--PVILLAGGL-----DRGNGFDELKP 368
Query: 320 PLNHHRCVITFGYSGVLIWKTLVNNGLSIP-CFAVANMKDAVNHARRMATNGDAIVLSPG 378
+++ + V+TFG + I K + N L I V N++ AV+ A ++ GD I+LSP
Sbjct: 369 YMDNVKAVLTFGQTAPKIEK--LGNELGIQHVKRVDNVEQAVSAAFALSNEGDVILLSPA 426
Query: 379 CASFDEFRNFEHRGMVF 395
CAS+D+F+ FE RG +F
Sbjct: 427 CASWDQFKTFEERGDMF 443
>gi|376316532|emb|CCF99921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
(UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
(D-glutamic acid-adding enzyme) [uncultured
Flavobacteriia bacterium]
Length = 446
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 100/380 (26%), Positives = 184/380 (48%), Gaps = 30/380 (7%)
Query: 24 SGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
+G V+SE++ A + K + +TG+NGK++ + +L ++ V GN+G +
Sbjct: 84 AGIEVISEVELAYRNCKS--KFIGITGSNGKTSTTGLLFHLLEKAKLDVAVAGNIGKSI- 140
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNY 142
C L +P++ VVE+SS+Q++ F P ++++LN++PDHL+R+ ++NY
Sbjct: 141 -----CWLLTEREPEY--LVVELSSFQLDDVVD-FKPIIAILLNISPDHLDRYDYKLENY 192
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
A K + + + ++ LN + R + D+ A E
Sbjct: 193 AEAKFRITKNQSPEDFFIYWNEDELLNAFVDSGRVKARTLSYGSKETADSAAWIEIEEES 252
Query: 203 AVGVVS-----QLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+++ ++ + + + GRHN +N+ A ++ LD+ +V + ++ + H
Sbjct: 253 ETELLNLNNKLRMSIQKLALQGRHNIYNSMAAGVAGRILDLRKEV--IRDSLMDFQNIEH 310
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R++ V + GV +++DSKATN+ +C ++ V + GG K N + L
Sbjct: 311 RLEHV-VSVCGVKYINDSKATNVN-SCWWALESMDRPSVWIAGGVDK------GNDYSSL 362
Query: 318 IEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLS 376
+E ++ + ++ G + L IP V +M+ AV A MA GDA++LS
Sbjct: 363 VELVDEKVKGIVLIGSENEKFKASFAE--LKIPIIEVMSMELAVREAYNMADKGDAVLLS 420
Query: 377 PGCASFDEFRNFEHRGMVFQ 396
P CASFD F N+E RG F+
Sbjct: 421 PACASFDLFDNYEDRGHQFK 440
>gi|450100021|ref|ZP_21858593.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SF1]
gi|450169802|ref|ZP_21883180.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SM4]
gi|449220581|gb|EMC20434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SF1]
gi|449246659|gb|EMC44957.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SM4]
Length = 451
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 188/380 (49%), Gaps = 37/380 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTEKDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q + +I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR---RMATNGDAIVL 375
+ + +I G S + V G++ N KD R + A GD ++L
Sbjct: 367 PDIKGLKKMIILGESAPRLKHAAVQAGVT-----YLNAKDVAQATRIAFQEANPGDVVLL 421
Query: 376 SPGCASFDEFRNFEHRGMVF 395
SP AS+D ++NFE RG F
Sbjct: 422 SPANASWDMYKNFEVRGDEF 441
>gi|304383924|ref|ZP_07366381.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
marshii DSM 16973]
gi|304335002|gb|EFM01275.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
marshii DSM 16973]
Length = 443
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 105/379 (27%), Positives = 187/379 (49%), Gaps = 34/379 (8%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
++SE++FA + K++ +TG+NGK+T + + + G + + GN+GN L
Sbjct: 89 IISEIEFAGRYT--HAKMVCITGSNGKTTTTSLIYHIFREAGYDVGLAGNIGNSL----- 141
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTK 146
AL ++ ++E+SS+Q++ F ++++LN+TPDHL+R+ M+NY K
Sbjct: 142 ---ALQVAEDPHAFYIIELSSFQLDDMFD-FRANIAILLNITPDHLDRYDHCMQNYVNAK 197
Query: 147 CHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
+ + + P + L + IK ++ + + + E + + E
Sbjct: 198 MRILQNQTEEDSFIFWNDDPIIKRELQKYDIKAMQYPFSELKENGSIGYIEEGRY-TLEE 256
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
P + Q +L + GRHN +N+ A ++ G G+ + + ++ HR++
Sbjct: 257 PTPFNMEQEEL---SLTGRHNIYNSLAAGIA--GSIAGIKKDVIRKSLSDFPGVEHRLEK 311
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V + + GV +++DSKATN++A C +D ++++GG+ K N +E I+ L
Sbjct: 312 VVK-VGGVQYINDSKATNVDA-CWYALDSMRTPTILIIGGKDK------GNDYEP-IKAL 362
Query: 322 NHHRCVITFGYSGVLIWKTLVN-NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 380
+CV Y G K N + L IP +MK+ + MA GD ++LSP CA
Sbjct: 363 VKEKCV-GLVYLGADNSKLHDNFDHLGIPVRDTHSMKECMEACYAMARPGDTVLLSPCCA 421
Query: 381 SFDEFRNFEHRGMVFQELA 399
SFD F+N E RG F+ LA
Sbjct: 422 SFDLFKNMEDRGNQFKALA 440
>gi|449883572|ref|ZP_21785242.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SA38]
gi|449925353|ref|ZP_21800214.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 4SM1]
gi|449161617|gb|EMB64798.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 4SM1]
gi|449249652|gb|EMC47759.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SA38]
Length = 451
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 189/380 (49%), Gaps = 37/380 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVAEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTEKDFLVLNF-NQDLVKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q + +I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR---RMATNGDAIVL 375
+ + +I G S + V G++ N KD R + A+ GD ++L
Sbjct: 367 PDIKGLKKMIILGESAPRLKHAAVQAGVT-----YLNAKDVAQATRIAFQEASPGDVVLL 421
Query: 376 SPGCASFDEFRNFEHRGMVF 395
SP AS+D ++NFE RG F
Sbjct: 422 SPANASWDMYKNFEVRGDEF 441
>gi|386820093|ref|ZP_10107309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Joostella marina
DSM 19592]
gi|386425199|gb|EIJ39029.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Joostella marina
DSM 19592]
Length = 444
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 105/386 (27%), Positives = 191/386 (49%), Gaps = 37/386 (9%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L++ G V+SE++FA+ + ++ +TG+NGK+T +L G+ + GN+G+
Sbjct: 82 LVELGISVISEIEFAS--LYTDATLIGITGSNGKTTTTMLTNHILKSEGLNVGMAGNIGD 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TM 139
+F + +K + V+E+SS+Q++ K F P ++++ N+TPDHL+R+
Sbjct: 140 -----SFAQMVAEQTKDFY---VLEISSFQLDGIKK-FAPNIAIITNITPDHLDRYDYKF 190
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
+NY +K + + + ++ + + +K H I P + E +F
Sbjct: 191 ENYIASKFRIAMNQTEKDYLIYDADDEVIEDWLKKHPIKSKLI---P-FSVQKELGYGAF 246
Query: 200 EVPAVGVVS------QLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
+++ ++ + + G+HN NA +AA +V L + + + ++E +
Sbjct: 247 LKEDKIIINLDKQHLEMATDTLALEGKHNTKNA-MAASTVAQL-LKIRKATIRESLENFQ 304
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
HR++ V + IQ V +++DSKATN+ AT L +K V ++GGQ K N
Sbjct: 305 GASHRLENVLK-IQNVQYINDSKATNVNATFYALDSMK-TPTVWIVGGQDK------GND 356
Query: 314 FEKLIEPLNHHR--CVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD 371
+ L+ PL + ++ G I + V G+ +M DAV ++ +A GD
Sbjct: 357 YLSLM-PLVREKVKAIVCLGLDNAKIIE--VFGGVVDFIVETTSMADAVKISKEVAEKGD 413
Query: 372 AIVLSPGCASFDEFRNFEHRGMVFQE 397
++LSP CASFD F N+E RG F+E
Sbjct: 414 TVLLSPACASFDLFTNYEDRGNQFKE 439
>gi|228476841|ref|ZP_04061486.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
salivarius SK126]
gi|228251415|gb|EEK10560.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
salivarius SK126]
Length = 450
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 113/385 (29%), Positives = 181/385 (47%), Gaps = 39/385 (10%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+A L+ G V +E++ A V I+ +TG+NGK+T T + +LNH G + GN
Sbjct: 89 VARALEKGIPVWTEVELAYLV--SEAPIIGITGSNGKTTTTTMIADVLNHGGKSGVLSGN 146
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P SE A A + V+E+SS+Q+ + F P ++V+ NL P H++ H
Sbjct: 147 IGFPASEVAQSVTAQDT-------LVMELSSFQL-MGIDSFHPHIAVITNLMPTHIDYHG 198
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKT 196
+ + Y K ++ + M +L F NQ L + + A + F V K+D
Sbjct: 199 SFEEYVAAKWNIQNQMTADDFVVLNF-NQDLAKELATQ--TKAQVVPFSTVEKVD----G 251
Query: 197 ASFEVPAVGVVSQL--QLHNMKVMGRHNYHNA----AVAALSVLGLDIGVDVEALNSTIE 250
A E + +L Q + V G HN NA AVA LS G+ +A+ T+
Sbjct: 252 AYLENGGLYFKGELVMQADEIGVPGSHNVENALATIAVAKLS------GISNQAIKETLA 305
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
HR+Q V I V + +DSK+TN+ AT L K +++ GG +
Sbjct: 306 SFGGVKHRLQFVDT-IDEVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------ 358
Query: 311 SNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 370
N F++LI + + ++ G S + + G++ ++ DA A A+ G
Sbjct: 359 GNEFDELIPDITGLKKMVILGESAPRVKRAADKAGVT--YLDAKDVADATRIAFDQASAG 416
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVF 395
D ++LSP AS+D ++NFE RG F
Sbjct: 417 DVVLLSPANASWDMYKNFEVRGDEF 441
>gi|25010591|ref|NP_734986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
agalactiae NEM316]
gi|77413561|ref|ZP_00789749.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
agalactiae 515]
gi|30316027|sp|Q8E6P1.1|MURD_STRA3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|23094944|emb|CAD46166.1| Unknown [Streptococcus agalactiae NEM316]
gi|77160390|gb|EAO71513.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
agalactiae 515]
Length = 451
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 102/372 (27%), Positives = 190/372 (51%), Gaps = 33/372 (8%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A V +++ +TG+NGK+T T + ++LN G + GN+G P SE
Sbjct: 99 VLTEVELAYLV--SESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNIGFPASEVV- 155
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ + V+E+SS+Q+ + K F P ++V+ NL P HL+ H + ++Y K
Sbjct: 156 ------QAADDKDILVMELSSFQL-MGVKEFRPHIAVITNLMPTHLDYHGSFEDYVAAKW 208
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTASFEVPA 203
++ + M ++ +L F NQ +++ + + A I F K+D + K ++
Sbjct: 209 NIQNQMSSSDFLVLNF-NQGISKELA--KTTKATIVPFSTTEKVDGAYVQDKQLFYKGEN 265
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
+ +V ++ V G HN NA +A ++V L G+ + + T+ HR+Q +
Sbjct: 266 IMLVD-----DIGVPGSHNVENA-LATIAVAKL-AGISNQVIRETLSNFGGVKHRLQSLG 318
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
+ + G+++ +DSK+TN+ AT L K +++ GG + N F++LI +
Sbjct: 319 K-VHGISFYNDSKSTNILATQKALSGFDNTKVILIAGGLDR------GNEFDELIPDITG 371
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 383
+ ++ G S + + G++ +++DAV+ A +A GD I+LSP AS+D
Sbjct: 372 LKHMVVLGESASRVKRAAQKAGVTYS--DALDVRDAVHKAYEVAQQGDVILLSPANASWD 429
Query: 384 EFRNFEHRGMVF 395
++NFE RG F
Sbjct: 430 MYKNFEVRGDEF 441
>gi|402703648|ref|ZP_10851627.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
helvetica C9P9]
Length = 467
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 102/366 (27%), Positives = 177/366 (48%), Gaps = 36/366 (9%)
Query: 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ 100
+++K +A+TGTNGKST + +LN G++ V GN+G P +A +SK +
Sbjct: 102 KNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGVPALQA-------KASKDGY- 153
Query: 101 VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160
V+E+SS+Q+++ K F ++V+LN+TPDHL+R++ M Y K +F+ M +
Sbjct: 154 --VLELSSFQLDLV-KTFTAKIAVLLNITPDHLDRYQDMTGYIAAKSKIFNRMDKESYAV 210
Query: 161 LPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
+ N + E + R L F KI + + +S N
Sbjct: 211 INIDNDYCREIFMLLQQEQRIKLI---PFSVTKILENGISVVDDKIKDNDISYKLSFNKN 267
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
+ G HN N +AA + IGV+ + + I ++ PHRMQ + I +++ +DSK
Sbjct: 268 LQGLHNCEN--IAASYAVAKIIGVEPKKILEYISSFQSLPHRMQYIGS-INNISFYNDSK 324
Query: 277 ATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVL 336
ATN + + L L+GG K +G E++ + + +G + +
Sbjct: 325 ATNAISAVQSIKALDN--IYWLVGGIPK------ESGIEEIKPYFSKIKKAYFYGQAKEM 376
Query: 337 IWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA----IVLSPGCASFDEFRNFEHRG 392
T+ N + C +++ A + A + A +A I+L+P C+S+D+F+NFE RG
Sbjct: 377 FADTVKNIVDFVIC---DDLEQAFDLAYKDAVGDNAEVKNILLAPSCSSYDQFKNFEERG 433
Query: 393 MVFQEL 398
+F +L
Sbjct: 434 ELFIKL 439
>gi|288800560|ref|ZP_06406018.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella sp.
oral taxon 299 str. F0039]
gi|288332773|gb|EFC71253.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella sp.
oral taxon 299 str. F0039]
Length = 443
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 106/393 (26%), Positives = 191/393 (48%), Gaps = 56/393 (14%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
++SE++FA + + K++ +TG+NGK+T + + + G + + GN+G L
Sbjct: 89 IISEIEFAGRYT--NSKMICITGSNGKTTTTSLIYHIFKEAGYDVSLAGNIGKSL----- 141
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-TMKNYALT 145
AL ++ ++E+SS+Q++ + Y F +V+LN+TPDHL+R++ M+ Y
Sbjct: 142 ---ALQVAEAPHAYYIIEISSFQLD--DMYDFRANTAVLLNITPDHLDRYEYKMQLYTDA 196
Query: 146 KCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVG 205
K + + TK + A + H++N+ EA+ +F A
Sbjct: 197 KMRIIQNQ--TKDDSFVYWADDDVVAAELHKYNI-------------EAQQLTFSENASN 241
Query: 206 VVS----------------QLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
V+ + + ++GRHN +N+ AAL+ GVDVEA+ +
Sbjct: 242 SVAACVDNGEIVVKKPVEFTMSRAELSLLGRHNLYNSLAAALAAAAN--GVDVEAIKQGL 299
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
HR++ V GV +++DSKATN++A C ++ +++LGG K G
Sbjct: 300 RTFAGVEHRLEYVTT-ANGVRYINDSKATNVDA-CRWALESMTTPTILILGGLDK---GN 354
Query: 310 ESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN 369
+ N ++L+ L+ + ++ G ++ + +GL + +MK+ + ++ A
Sbjct: 355 DYNEIKQLV--LDKCKALVFMGADNSVLHEFF--DGLGLEIADTHSMKECMQECKKRAVE 410
Query: 370 GDAIVLSPGCASFDEFRNFEHRGMVFQELAFSA 402
GD I+LSP CASFD F+N E RG F+ A A
Sbjct: 411 GDTILLSPCCASFDLFKNMEDRGEQFKTWARKA 443
>gi|408370293|ref|ZP_11168071.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Galbibacter sp.
ck-I2-15]
gi|407744371|gb|EKF55940.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Galbibacter sp.
ck-I2-15]
Length = 443
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 106/389 (27%), Positives = 201/389 (51%), Gaps = 43/389 (11%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
LL+ G V+SE++FA++ ++ +TG+NGK+T +L+ G++ + GN+G+
Sbjct: 81 LLELGVPVISEIEFASRYT--DAMLIGITGSNGKTTTTMLTNHLLSAGGLKVGMAGNIGD 138
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHK-T 138
++ ++ V+E+SS+Q++ I + F P +++V N+TPDHL+R+
Sbjct: 139 SFAQMV--------AQRDLDYYVLEISSFQLDGIED--FAPHIAIVTNITPDHLDRYDYK 188
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+NY +K + + + + + + E ++ ++ + A + F I+ + + +
Sbjct: 189 FENYIASKFRITMNQTEEDYLIYDYDDPVIAEWLQNNKIH-ARLLPFS---IEKKLEQGA 244
Query: 199 FEVPAVGVVS------QLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
+ V++ Q+ + + G+HN NA +AA +V L + + + ++E
Sbjct: 245 YLEDNKIVITIDKHHFQMSTDTLALEGKHNVKNA-MAASTVAQL-LKIRKATIRESLENF 302
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
+ HR++ V + IQ V +++DSKATN+ AT L D V ++GGQ K N
Sbjct: 303 QGAEHRLEKVLK-IQNVHYINDSKATNVNATYYAL-DSMSTPTVWIVGGQDK------GN 354
Query: 313 GFEKLIEPLNHHR--CVITFGYSGVLIWKTLVNNGLSIPCFAV--ANMKDAVNHARRMAT 368
+ L+ PL + ++ G+ I +T S+ F V +M+DAV ++ +A
Sbjct: 355 DYLTLM-PLVREKVKAIVCLGWDNAKIIETFG----SVVEFIVETTSMEDAVRVSKEVAQ 409
Query: 369 NGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
GD+++LSP CASFD F N++ RG F+E
Sbjct: 410 PGDSVLLSPACASFDLFLNYQDRGDQFKE 438
>gi|295101921|emb|CBK99466.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium
prausnitzii L2-6]
Length = 466
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 119/391 (30%), Positives = 182/391 (46%), Gaps = 43/391 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+ +G V SE++ Q P +I+AVTG++GK+T T + + G +GGN+G
Sbjct: 100 MAAGTMVTSEVELFFQFCP--CEIVAVTGSDGKTTTTTLISKFYEAAGRRVHLGGNIGAA 157
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
L LP P VAVVE+SS+Q+ + + P ++VV N+TP+HL+ HK M+
Sbjct: 158 L------LPMLPEVSPD-DVAVVELSSFQL--ISMHQSPNIAVVTNVTPNHLDHHKDMQE 208
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--------GAFPGVKIDTE 193
Y K ++ + +L + N+ K + W GAF ++ D
Sbjct: 209 YIDAKRNILLYQKQPCRAVLGYENEISRSMQKDCKGKQVWFTRLHETDNGAF--LREDGM 266
Query: 194 AKTASFEVPAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
A GVV+ L ++K+ G HN N AA +V G V VEA+
Sbjct: 267 LCMAEN-----GVVTPFLAQKDVKLRGLHNIENLLAAAAAVWG---EVPVEAIQLVGSSF 318
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
HR++ V R + GVT+ +DS T+ T GL K +++ GG K +
Sbjct: 319 TGVEHRIEPV-RVLDGVTYYNDSIGTSPTRTIAGLRSFD-QKVILIAGGYDKHIP----- 371
Query: 313 GFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNN----GLSIPCFAVANMKDAVNHARRMA 367
+E L + H + ++ G +G I K + + +P NM+ AV AR A
Sbjct: 372 -YEPLAPEITAHVKNLVLMGATGPRIEKAVREDPNFHEAELPIQHADNMQHAVELARACA 430
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
GD I+LSP ASFD + NFE RG F+ +
Sbjct: 431 KPGDIIILSPASASFDLYPNFEVRGREFKSI 461
>gi|419706467|ref|ZP_14233988.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
salivarius PS4]
gi|383283788|gb|EIC81731.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
salivarius PS4]
Length = 450
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 113/382 (29%), Positives = 182/382 (47%), Gaps = 33/382 (8%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+A L+ G V +E++ A V I+ +TG+NGK+T T + +LNH G + GN
Sbjct: 89 VARALEKGIPVWTEVELAYLV--SEAPIIGITGSNGKTTTTTMIADVLNHGGKSGVLSGN 146
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P SE A A + V+E+SS+Q+ + F P ++V+ NL P H++ H
Sbjct: 147 IGFPASEVAQSVTAQDT-------LVMELSSFQL-MGIDSFHPHIAVITNLMPTHIDYHG 198
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKT 196
+ + Y K ++ + M + +L F NQ L + + A + F V K+D
Sbjct: 199 SFEAYVAAKWNIQNRMTSDDFIILNF-NQDLAKELATK--TEAQVVPFSTVEKVD----G 251
Query: 197 ASFEVPAVGVVSQL--QLHNMKVMGRHNYHNA-AVAALSVLGLDIGVDVEALNSTIEILR 253
A E + +L Q + V G HN NA A A+S L G+ +A+ T+
Sbjct: 252 AYLENGGLYYKGELIMQADEIGVPGSHNVENALATIAVSKLS---GISNQAIKETLAGFG 308
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
HR+Q V I V + +DSK+TN+ AT L K +++ GG + N
Sbjct: 309 GVKHRLQFVDT-INDVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNE 361
Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
F++L+ + + +I G S + + G+S ++ DA A A+ GD +
Sbjct: 362 FDELVPDITGVKKMIILGESAPRVKRAAEKAGVS--YLDAKDVADATRIAFDQASAGDVV 419
Query: 374 VLSPGCASFDEFRNFEHRGMVF 395
+LSP AS+D ++NFE RG F
Sbjct: 420 LLSPANASWDMYKNFEVRGDEF 441
>gi|387813216|ref|YP_005428698.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381338228|emb|CCG94275.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 446
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 110/358 (30%), Positives = 171/358 (47%), Gaps = 38/358 (10%)
Query: 49 TGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSS 108
TG+NGK+TV T VG+M G VGGN+G P AL + V+E+SS
Sbjct: 115 TGSNGKTTVTTLVGEMARAAGRNVQVGGNIGTP---------ALDLLDQGADLYVLELSS 165
Query: 109 YQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL-----LPF 163
+Q+E + + VLN++ DH++R+ Y K ++ N + L P
Sbjct: 166 FQLETTEE-LGALAATVLNVSDDHMDRYPDKMAYFQAKQRIYRGCKNAIVNLDDALSTPM 224
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
L G FN F + D + ++ + + + S+LQL MGRHN
Sbjct: 225 ARDTLRFLCFG--FNRVNPETF-STRDDDQGTWITWGLDNLLLASELQL-----MGRHNI 276
Query: 224 HNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEAT 283
N V A LG G+ +E + R PHR + V R++ GV +++DSK TN+ AT
Sbjct: 277 SN--VMAALALGHAAGLAMEPMLEVARSFRGLPHRCEFV-RNLNGVDYINDSKGTNVGAT 333
Query: 284 CTGLMDL--KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKT 340
+ L K +++ GG K + F+ L EP+ R ++ G I +
Sbjct: 334 VAAIESLVPDSGKVILIAGGDGKGAD------FQLLAEPVAACCRALVLIGRDAGKISEA 387
Query: 341 LVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
+ G S+P + ++++AV+ AR+ A GD ++LSP CASFD FR++ RG F+ L
Sbjct: 388 V---GASVPQYRATSVQEAVSLARQAAEPGDRVLLSPACASFDMFRDYNDRGEQFRAL 442
>gi|329954172|ref|ZP_08295267.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
clarus YIT 12056]
gi|328528149|gb|EGF55129.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
clarus YIT 12056]
Length = 444
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 104/387 (26%), Positives = 189/387 (48%), Gaps = 39/387 (10%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + + K++ +TG+NGK+T + + + G+ + GN+GN
Sbjct: 82 LKEKGISIISEIEFAGRYT--NAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGN 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL + K V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAMEKHDYYVIELSSFQLD--NMYKFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID-----TE 193
M+ Y K + + + + + ++ H A + F VK D E
Sbjct: 190 MQKYVDAKFRITQNQTPEDAFIYWNDDPIIRRELEKHGLK-AHLYPFAAVKEDGAIAYVE 248
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTIEIL 252
P + ++ + + G HN +N+ A +S L G+ E + +
Sbjct: 249 DGEVEINEP---IAFNMEQEELALHGTHNLYNSLAAGISANLA---GIRKEDIRKALSDF 302
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
+ HR++ V ++G+ +++DSKATN+ + L + K V++LGG+ K N
Sbjct: 303 KGVEHRLEKVAT-VRGIQFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK------GN 354
Query: 313 GFEKLIEPLNHHRC--VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 370
+ + IE L +C ++ G + + GL + MKDAV+ A ++A G
Sbjct: 355 DYTE-IEDLVRTKCSALVYLGLHNEKLHEFFDRFGLPVADVQTG-MKDAVDAAFKLAQKG 412
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVFQE 397
+ ++LSP CASFD F+++E RG F++
Sbjct: 413 ETVLLSPCCASFDLFKSYEDRGDQFKK 439
>gi|323343872|ref|ZP_08084099.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
oralis ATCC 33269]
gi|323095691|gb|EFZ38265.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
oralis ATCC 33269]
Length = 443
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 102/388 (26%), Positives = 190/388 (48%), Gaps = 40/388 (10%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L+ G ++SE++FA + K++ +TG+NGK+T + + + G + + GN+G
Sbjct: 82 LMAQGTHIISEIEFAGRYT--HAKMICITGSNGKTTTTSLIYHIFKTAGYDVGLAGNIGR 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ + ++E+SS+Q++ N Y F ++++LN+TPDHL+R++
Sbjct: 140 SL--------ALQVAEEPHEYYIIELSSFQLD--NMYKFHANIAILLNITPDHLDRYEYC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF--PGVKIDTEAKT 196
M++Y K + + TK + N ++ I H I A P ++ +
Sbjct: 190 MQHYVDAKMRIIQN--QTKQDSFIYWN---DDPIIKHELEKYDIHAVKCPFSELKEKGSI 244
Query: 197 ASFEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
E + ++ + + G+HN +N+ A ++ I D+ + ++
Sbjct: 245 GYIEEGQYKIEKPTPFNMEQEELSLTGKHNIYNSLAAGIASNISGIKKDI--IRKSLSDF 302
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
HR++ V + + GV +++DSKATN++A L +K +++LGG+ K G + +
Sbjct: 303 PGVEHRLEKVCK-VGGVQYINDSKATNVDACWYALESMKT-PTILILGGKDK---GNDYS 357
Query: 313 GFEKLIEPLNHHRCV--ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 370
++L+ +CV + G + + + L IP +M+D V MA G
Sbjct: 358 SIKELVRK----KCVGLVYLGADNTKLHQNF--DSLGIPVRDTHSMEDCVKACYDMAKPG 411
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVFQEL 398
D ++LSP CASFD F+N E RG F+ L
Sbjct: 412 DTVLLSPCCASFDLFKNMEDRGNQFKNL 439
>gi|388600435|ref|ZP_10158831.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
campbellii DS40M4]
Length = 437
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 117/394 (29%), Positives = 181/394 (45%), Gaps = 57/394 (14%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ +L G V+ +++ A + + + +A+TG+NGKSTV G M G+ VGGN
Sbjct: 85 IQAVLAKGTPVVGDIELFAWAVDKPV--IAITGSNGKSTVTDLTGVMAKAAGLTVGVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P AL + + V+E+SS+Q+E + + LNL+ DH++R++
Sbjct: 143 IGVP---------ALDLLEQDADLYVLELSSFQLETTSSLKLK-AAAFLNLSEDHMDRYE 192
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
M +Y K +F N +L ++ N+ E +L G+ D +A
Sbjct: 193 GMSDYRQAKLRIFD---NAELAVV---NRDDQETFPDTETSLVTFGS------DEQA--- 237
Query: 198 SFEVPAVGVVSQLQLH--------NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
+ + A G + L H +K++G+HN NA L VL L DV+ + ++
Sbjct: 238 -YGLEADGNRTWLLDHGQRVIASDELKLVGKHNLANA----LVVLALLKAADVD-YHKSL 291
Query: 250 EILRTPP---HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILLGGQAKV 305
L+T HR Q+V D +GV WV+DSKATN+ +T L L+ K +L+GG K
Sbjct: 292 NALKTYTGLTHRCQVV-ADNRGVKWVNDSKATNIASTMAALSGLESTGKLYLLVGGVGK- 349
Query: 306 LNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR 365
G + + + LN C FG G L M+D +
Sbjct: 350 --GADFTPLKPIFATLNLQICC--FGADGDEFMP------LHESATRFDTMEDVIQQISS 399
Query: 366 MATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
GD ++LSP CASFD+F NF RG F LA
Sbjct: 400 QLKTGDMVMLSPACASFDQFDNFMARGDAFAALA 433
>gi|78213668|ref|YP_382447.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
sp. CC9605]
gi|118595700|sp|Q3AHP0.1|MURD_SYNSC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|78198127|gb|ABB35892.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
CC9605]
Length = 461
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 115/393 (29%), Positives = 182/393 (46%), Gaps = 37/393 (9%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L G +V E+D A + + I + +TGTNGK+TV + +L G+ A +GGN
Sbjct: 86 LVQLRSEGVQVRGEMDTAWDAL-QQIPWIGITGTNGKTTVTHLLSHVLEAAGLTAPMGGN 144
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G LS A C +KP+ V+E+SSYQ+E P + + LTPDHLERH
Sbjct: 145 IG--LSAAELACQIGSGAKPRPDWLVMELSSYQIEAA-PAVAPKIGIWTTLTPDHLERHG 201
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLA-WI---GAFPGVKIDTE 193
+++ Y K L ++ L + L + + +N W+ GA P +
Sbjct: 202 SLEAYRAIKRGLLER---SECALFNADDPDLRQ--QRSSWNRGTWVSSEGAHP------D 250
Query: 194 AKTASFEVPAVGVV--SQLQLHNMKVM---GRHNYHNAAVAALSVLGLDIGVDVEALNST 248
+ A + G+V + +L V+ GRHN N + ++ L+ G+ + +
Sbjct: 251 NQPADLWIDDEGMVRNNTTRLFAADVLAMPGRHNRQN--LLLVTAAALEAGLSPQQIADA 308
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG 308
+ PHR++ + + G + +DSKATN +A GL ++G V+L GGQ K G
Sbjct: 309 LRTFPGVPHRLEQLGT-LAGASVFNDSKATNYDAAEVGLRAVQG-PVVVLAGGQTK--QG 364
Query: 309 QESNGFEKLIEPLNHHRC-VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA 367
S ++ L C +I FG + G ++ AVN A
Sbjct: 365 DASGWLKQ----LQSKACSLILFGAGADELASLAKAAGYPGELLQCPELESAVNLAEGAV 420
Query: 368 T--NGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
+++LSP CASFD++R+FE RG F+ L
Sbjct: 421 QRHQASSLLLSPACASFDQYRDFEARGEHFRTL 453
>gi|312794105|ref|YP_004027028.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase
[Caldicellulosiruptor kristjanssonii 177R1B]
gi|312181245|gb|ADQ41415.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
[Caldicellulosiruptor kristjanssonii 177R1B]
Length = 458
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 114/380 (30%), Positives = 188/380 (49%), Gaps = 27/380 (7%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V+ E++ A + +S I+A+TGTNGK+T T VG++L + V GN+G P
Sbjct: 91 KKGIEVIGEIELAYRFC-KSKNIVAITGTNGKTTTTTLVGEILKKQYEDVVVCGNIGLPF 149
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
I + + + V+E+SS+Q+E KYF P V +LN+TPDHL RH TM+NY
Sbjct: 150 -------IDTIETSSENTIFVLEISSFQLETI-KYFKPKVGCILNITPDHLNRHMTMENY 201
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA----FPG-VKIDTEAKTA 197
K +F ++ +L + N + I + N+ F V ++ +
Sbjct: 202 IKAKMRIFENIDEMGYTVLNYDNNITRDLIGLAKGNVIVFSKNKCQFKNMVFVEKDTIYF 261
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+FE ++ + ++ + G HN NA +AA+S L G++ + + ++ R H
Sbjct: 262 TFEGKTQEIMKKDEIF---IPGEHNLENA-LAAISCT-LPFGIEKDTIEQVLKTFRGVEH 316
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R++ V +I G+ + +DSK TN +A L + +++ GG K G+ F L
Sbjct: 317 RIEFVA-EINGIKFYNDSKGTNTDAAEKALRAFES-PIILIAGGYDK---GESFEKFASL 371
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
+ + V G + I L G V+ +K+AV + A NGD ++LSP
Sbjct: 372 V--AKKVKKVFLLGQTKHKIASELEKIGYK-NFELVSTLKEAVRKSFECAQNGDIVLLSP 428
Query: 378 GCASFDEFRNFEHRGMVFQE 397
CAS+D F N+E RG +F+E
Sbjct: 429 ACASWDMFENYEQRGRMFKE 448
>gi|260899193|ref|ZP_05907588.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
parahaemolyticus AQ4037]
gi|308107131|gb|EFO44671.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
parahaemolyticus AQ4037]
Length = 437
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 114/393 (29%), Positives = 177/393 (45%), Gaps = 55/393 (13%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ +L G V+ +++ A + + + +A+TG+NGKSTV G M G+ VGGN
Sbjct: 85 IQTVLAKGTPVVGDIELFAWAVNKPV--VAITGSNGKSTVTDLTGVMAKAAGLTVGVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P AL + + V+E+SS+Q+E + LNL+ DH++R++
Sbjct: 143 IGVP---------ALELLEQDVDLYVLELSSFQLET-TLSLKLKAAAFLNLSEDHMDRYE 192
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
M +Y K +F H +L ++ +Q ++ P V ++ +
Sbjct: 193 GMADYRAAKLRIFDH---AELAVVNRDDQETYPEVE-----------MPVVTFGSDEQAY 238
Query: 198 SFEVPAVGVVSQLQLH--------NMKVMGRHNYHNAAV--AALSVLGLDIGVDVEALNS 247
EV G + L H +K++G+HN NA V A L G+D + AL +
Sbjct: 239 GLEVD--GSRTWLLDHGQRVIASDELKLVGKHNLANALVVLALLKAAGVDYHNALNALKN 296
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILLGGQAKVL 306
+ HR Q+V D +GV WV+DSKATN+ +T L L+ K +L+GG K
Sbjct: 297 YTGL----THRCQVV-ADNRGVKWVNDSKATNIASTMAALSGLESTGKLYLLVGGVGK-- 349
Query: 307 NGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRM 366
G + + + LN C FG G L M+D +
Sbjct: 350 -GADFTPLKPIFATLNLQLCC--FGLDGDDFMP------LHESAIRFNTMEDVIQQISSQ 400
Query: 367 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
+GD ++LSP CASFD+F NF RG F LA
Sbjct: 401 LKSGDMVMLSPACASFDQFDNFMARGDAFAVLA 433
>gi|116328899|ref|YP_798619.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
borgpetersenii serovar Hardjo-bovis str. L550]
gi|116330494|ref|YP_800212.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
borgpetersenii serovar Hardjo-bovis str. JB197]
gi|122281748|sp|Q04UG6.1|MURD_LEPBJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|122283318|sp|Q04Z09.1|MURD_LEPBL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|116121643|gb|ABJ79686.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
borgpetersenii serovar Hardjo-bovis str. L550]
gi|116124183|gb|ABJ75454.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
borgpetersenii serovar Hardjo-bovis str. JB197]
Length = 462
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 115/391 (29%), Positives = 177/391 (45%), Gaps = 78/391 (19%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
KI+ +TGT+GKST + V +L + GGNLG P + I+L AV
Sbjct: 103 KIIGITGTDGKSTTTSLVAHLLKKDFSDLKEGGNLGIPFTSFCKEPISL---------AV 153
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHL-------FSHMVNT 156
+E+SSYQ+E + VSV LNL PDHLERH+TM+NY K + S +V+
Sbjct: 154 LELSSYQLEDSSPLDL-NVSVFLNLAPDHLERHETMENYFRAKLKIADLQNPNHSLIVSE 212
Query: 157 KL------------GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K+ LL FG +EAI +E +T+ F +
Sbjct: 213 KIREKILNSTSVQCKLLSFGRATTSEAILDES--------------SSEIRTSKF----I 254
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+S+ L G HN N A A L+ IG E++ + I PHR QI
Sbjct: 255 YDISRFYLP-----GTHNRENLAAAILASEA--IGGKPESIQAQIPFFMGLPHRFQIAGE 307
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
+G+++++DSK+TNL + G+ K + ++LGG+ K + + F L+ +
Sbjct: 308 K-RGISFINDSKSTNLHSMLAGMSAWKNLDRTCLILGGRPKQEDPKPLYDF--LMRGIG- 363
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVN------------HARRMATNGD 371
CV+ G + +W+ + N + F+V N+ +A R++ + +
Sbjct: 364 --CVVLIGEARS-VWEKGIRNVIGEKLFSVENLDEAFKIFKKWNVISESPEIRKIRLSSE 420
Query: 372 ----AIVLSPGCASFDEFRNFEHRGMVFQEL 398
V SP C SFD+++NFE RG F L
Sbjct: 421 ITISYFVFSPACVSFDQYKNFEERGNHFLSL 451
>gi|385330303|ref|YP_005884254.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinobacter
adhaerens HP15]
gi|311693453|gb|ADP96326.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Marinobacter
adhaerens HP15]
Length = 446
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 114/367 (31%), Positives = 168/367 (45%), Gaps = 48/367 (13%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGK+TV T VG+M G VGGN+G P AL + V+
Sbjct: 111 IVAITGSNGKTTVTTLVGEMAKAAGRNVAVGGNIGTP---------ALDLLGQGADLYVL 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL---- 160
E+SS+Q+E ++ + VLNL+ DH++R+ Y K +F N + L
Sbjct: 162 ELSSFQLETTDE-LNALAATVLNLSDDHMDRYPNKMAYFQAKQRIFRGCKNAIVNLDDAL 220
Query: 161 -LPFGNQHLNEAIKG-HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
P +L G HR N + D + +F G + L +K+M
Sbjct: 221 STPMARDNLRFLCFGFHRVNPETFS----TRDDDQGTWITF-----GFDNLLLASELKLM 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT-P--PHRMQIVHRDIQGVTWVDDS 275
G HN N A + +DV + + R P PHR + V R + V +++DS
Sbjct: 272 GHHNISNVMAALALGHAAGLPMDV-----MLRVAREFPGLPHRCEFVRR-LNDVDFINDS 325
Query: 276 KATNLEATCTGLMDL---KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFG 331
K TN+ AT + L KG K V++ GG K + F L P+ H R V+ G
Sbjct: 326 KGTNVGATVAAIESLAPDKG-KVVLIAGGDGKGAD------FTALEAPIALHCRAVLLIG 378
Query: 332 YSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 391
I L G IP V ++ +AV+ + +A GD ++LSP CASFD FR++ R
Sbjct: 379 RDAPAIADVL---GSGIPVHRVGSLAEAVSRSAELAMPGDRVLLSPACASFDMFRDYLDR 435
Query: 392 GMVFQEL 398
G F+ L
Sbjct: 436 GDQFRSL 442
>gi|322378367|ref|ZP_08052823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Helicobacter
suis HS1]
gi|321149224|gb|EFX43668.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Helicobacter
suis HS1]
Length = 423
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 116/385 (30%), Positives = 180/385 (46%), Gaps = 43/385 (11%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIK------ILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74
L+ + K + SE D+ + + K I+ ++GTNGK+T +G +L A V
Sbjct: 70 LVVASKHLCSEYDYIKGLWQTNRKHLPFPTIIFISGTNGKTTTARMLGLLLK--SSNAQV 127
Query: 75 GGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLE 134
GGN+G PL + + I KP + V ++E SS+ + N + P + ++L L+ DHL
Sbjct: 128 GGNIGIPLIDL-YTQIKAEQRKPPY-VWILETSSFTLHYTN-HLVPQIYILLPLSQDHLS 184
Query: 135 RHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEA 194
H+ +NY V KL L F Q +GH F A + P VK
Sbjct: 185 WHENHENY-----------VEAKLKPLSFMQQ------EGHVFLHASLKDHPTVKALINP 227
Query: 195 KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV-DVEALNSTIEILR 253
F + + Q+ L KV + A+ ALSV L GV D + LN+ +
Sbjct: 228 PNLIFYQDSKHLAKQMGLQISKVRFEEPFLLDALLALSVAKLYSGVADYDLLNTYM---- 283
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
PHR++I Q TWVDDSKATN++AT L KG ++LGG K ++
Sbjct: 284 IQPHRIEIFLDQDQN-TWVDDSKATNIDATLKALDRFKGCYIHLILGGDTKGMD------ 336
Query: 314 FEKLIEPLNHHRC-VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 372
+ L E L H + + G S ++ + + I +++ AV H ++ G
Sbjct: 337 LKPLFEVLAHMQVEIYAIGVSAPMVMQ--MAQDYHIRAHLCHDLRIAVEHIKQNLRPGQI 394
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQE 397
+LSP AS D+F +++HRG+ F+E
Sbjct: 395 GMLSPSAASLDQFASYKHRGITFKE 419
>gi|54310305|ref|YP_131325.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Photobacterium profundum SS9]
gi|60390455|sp|Q6LMF4.1|MURD_PHOPR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|46914746|emb|CAG21523.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase
[Photobacterium profundum SS9]
Length = 447
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 120/413 (29%), Positives = 194/413 (46%), Gaps = 57/413 (13%)
Query: 3 MLWLFLLEFQLKATGLACLL-------QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKS 55
M WL + + + G+A +G ++ +++ A+V+ + + +A+TG+NGKS
Sbjct: 63 MNWLLEADLIVASPGIALATPELVAAKAAGIEIVGDIELFARVVTKPV--VAITGSNGKS 120
Query: 56 TVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPN 115
TV + +G+M GI VGGN+G AL + + V+E+SS+Q+E +
Sbjct: 121 TVTSLIGEMAKEAGINVGVGGNIG---------FAALDMLVNEHDLYVLELSSFQLETTS 171
Query: 116 KYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV-----NTKLGLLP--FGNQHL 168
+V LNL+ DH++R+ +++Y+L K +F H L P F +Q
Sbjct: 172 SLQLKA-AVYLNLSEDHMDRYNGLEDYSLAKMRIFEHAELAVYNRDDLATFPVSFSHQIT 230
Query: 169 NEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAV 228
+ + L V + E A E P ++ ++ ++GRHN N+
Sbjct: 231 SFGFDNQDYGL--------VTLHGEEFLALDEQPI------MKTSDIALVGRHNVANSLA 276
Query: 229 AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL- 287
A ++I D +A+ ++ HR Q+V V WV+DSKATNL +T L
Sbjct: 277 ALALADAVNI--DRQAVCRALQRYNGLAHRCQLVVNQ-HDVKWVNDSKATNLASTLAALK 333
Query: 288 -MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGL 346
++L G K +L+GG K G + + + ++ LN + FG G + LV+ +
Sbjct: 334 GLNLPG-KLHLLVGGDGK---GADFSELKLVLADLNVQ--LYCFGRDGNQ-FMPLVDAPI 386
Query: 347 SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
I M A+ A A GD I+LSP CASFD+F NF RG F E A
Sbjct: 387 CIE-----TMAQAMAIAADTAQKGDMILLSPACASFDQFPNFMARGDAFIEQA 434
>gi|313115620|ref|ZP_07801078.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium
cf. prausnitzii KLE1255]
gi|310622069|gb|EFQ05566.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium
cf. prausnitzii KLE1255]
Length = 467
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 118/391 (30%), Positives = 184/391 (47%), Gaps = 42/391 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+ +G V SE++ P +I+AVTG++GK+T T + + G + +GGN+G
Sbjct: 100 MAAGTMVTSEVELFFDFCP--CEIVAVTGSDGKTTTTTLISKFYEAAGRKVHLGGNIGAA 157
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
L LP P+ VAVVE+SS+Q+ + + P ++VV N+TP+HL+ HK M+
Sbjct: 158 L------LPMLPEVAPE-DVAVVELSSFQL--ISMHSSPNIAVVTNVTPNHLDHHKDMQE 208
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQ---HLNEAIKGH-----RFNLAWIGAFPGVKIDTE 193
Y K ++ + +L + N+ + KG R + GAF
Sbjct: 209 YIDAKRNILLYQKQPCRAVLGYENEISRSMQSDCKGKQVWFTRLHDTDNGAF------LR 262
Query: 194 AKTASFEVPAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
+ + GVV+ L ++K+ G HN N AA +V G V VEA+
Sbjct: 263 KEDNMLCMAEDGVVTPFLAQKDVKLRGLHNIENLLAAAAAVWG---EVPVEAIQKVGSTF 319
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
HR++ V R + GV + +DS T+ T GL K +++ GG K +
Sbjct: 320 TGVEHRIEPV-RTLDGVLYYNDSIGTSPTRTIAGLRSFN-QKVILIAGGYDKHIP----- 372
Query: 313 GFEKLI-EPLNHHRCVITFGYSGVLIWKTLVN----NGLSIPCFAVANMKDAVNHARRMA 367
+E L E + H + ++ G +G I K + N +P NM+ AV AR A
Sbjct: 373 -YEPLAPEVVAHVKNLVLMGATGPRIEKAVREDPNFNEAELPIQHADNMQHAVELARACA 431
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
GD I+LSP ASFD + NFE RG F+++
Sbjct: 432 KPGDIIILSPASASFDLYPNFEVRGREFKKI 462
>gi|32490957|ref|NP_871211.1| hypothetical protein WGLp208 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|30316007|sp|Q8D2Z4.1|MURD_WIGBR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|25166163|dbj|BAC24354.1| murD [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 438
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 105/377 (27%), Positives = 195/377 (51%), Gaps = 37/377 (9%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
++ +++ A+ R I +A+TG+NGKSTV + +G + + G+ +GGNLG P +
Sbjct: 91 EIIGDIELFAREASRPI--IAITGSNGKSTVTSMIGAIALNSGLSVGIGGNLGTPALDLL 148
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTV-SVVLNLTPDHLERHKT-MKNYAL 144
++ +Q+ ++E+SS+Q+E + T+ S +LN+T DH++R+ + Y L
Sbjct: 149 --------NEKSYQLYIIELSSFQLE--TTFNLKTIASSILNVTHDHMDRYPLGINQYRL 198
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K ++ N K+ ++ + ++ + ++ + G + K ++ V V
Sbjct: 199 IKLKIYK---NAKVKIINL-DDYMTWPVHKNKSVCIGFSSHKGKYCIKKHKKNNWMV--V 252
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
L+ MK+ G HNY NA V+ + L I ++ +LN T++ PHR QI+H+
Sbjct: 253 NNKFLLKCSEMKISGFHNYLNALVSLIFSDILKIPREI-SLN-TLKNFSGLPHRFQIIHK 310
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKVLNGQESNGFEKLIEPLNH 323
++W++DSK+TN+ +T L +K + +LLGG +K N K+I N
Sbjct: 311 K-NNISWINDSKSTNVSSTIAALSSIKIKGNIHLLLGGDSKKANLLP---LMKIIR--NK 364
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCF-AVANMKDAVNHARRMATNGDAIVLSPGCASF 382
+ FG L+ K ++ ++ + ++ +K+ +NH GD ++LSP C+S
Sbjct: 365 KIKLYCFGKDAYLLSKISTDSFINDTLYHSMIKIKENLNH-------GDIVLLSPACSSL 417
Query: 383 DEFRNFEHRGMVFQELA 399
D+F+NF+ RG F +LA
Sbjct: 418 DQFKNFKERGEKFTKLA 434
>gi|406709008|ref|YP_006763734.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
agalactiae GD201008-001]
gi|410594154|ref|YP_006950881.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
agalactiae SA20-06]
gi|406649893|gb|AFS45294.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
agalactiae GD201008-001]
gi|410517793|gb|AFV71937.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
agalactiae SA20-06]
Length = 455
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 102/372 (27%), Positives = 191/372 (51%), Gaps = 33/372 (8%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A V +++ +TG+NGK+T T + ++LN G + GN+G P SE
Sbjct: 103 VLTEVELAYLV--SESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNIGFPASE--- 157
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ + K V+E+SS+Q+ + K F P ++V+ NL P HL+ H + ++Y K
Sbjct: 158 -VVQAANDKDTL---VMELSSFQL-MGVKEFRPHIAVITNLMPTHLDYHGSFEDYVAAKW 212
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTASFEVPA 203
++ + M ++ +L F NQ +++ + + A I F K+D + K ++
Sbjct: 213 NIQNQMSSSDFLVLNF-NQGISKELA--KTTKATIVPFSTTEKVDGAYVQDKQLFYKGEN 269
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
+ + + ++ V G HN NA +A ++V L G+ + + T+ HR+Q +
Sbjct: 270 I-----MSVDDIGVPGSHNVENA-LATIAVAKL-AGISNQVIRETLSNFGGVKHRLQSLG 322
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
+ + G+++ +DSK+TN+ AT L K +++ GG + N F++LI +
Sbjct: 323 K-VHGISFYNDSKSTNILATQKALSGFDNTKVILIAGGLDR------GNEFDELIPDITG 375
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 383
+ ++ G S + + G++ +++DAV+ A +A GD I+LSP AS+D
Sbjct: 376 LKHMVVLGESASRVKRAAQKAGVTYS--DALDVRDAVHKAYEVAQQGDVILLSPANASWD 433
Query: 384 EFRNFEHRGMVF 395
++NFE RG F
Sbjct: 434 MYKNFEVRGDEF 445
>gi|167745317|ref|ZP_02417444.1| hypothetical protein ANACAC_00008 [Anaerostipes caccae DSM 14662]
gi|167655038|gb|EDR99167.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerostipes
caccae DSM 14662]
Length = 468
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 114/380 (30%), Positives = 193/380 (50%), Gaps = 25/380 (6%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
+ SG+ V SE++ A QV +I A+TGTNGK+T VG+++ + +V GN+G
Sbjct: 103 FMDSGRPVWSEIELAYQV--SRGQIAAITGTNGKTTTTALVGEIMKCFYSDVYVVGNIGT 160
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P + +AL + V V E+SS+Q+E F P VS VLN+TPDHL+RH T++
Sbjct: 161 P-----YTSVALDTKDE--SVIVAEISSFQLETIQD-FRPQVSAVLNITPDHLDRHGTVE 212
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFE 200
YA TK + + ++ +L + + + + + ++ K SF
Sbjct: 213 VYARTKESIGKNQTGDQVMVLNYEDPVTRNMAERANARVVFFSLDHELEEGVYFKDGSFM 272
Query: 201 VPAVGVVSQLQLH-NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ V + ++ ++G HNY N +AA++V +GV E + + + HR+
Sbjct: 273 LAENKTVQTICTEADINLLGGHNYENI-LAAIAVSHY-MGVPAEQIRKGVSGFKGVEHRI 330
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG-FEKLI 318
+ V I+ V + +DSK TN +A G+ + ++ L+GG G + ++ I
Sbjct: 331 EYVDT-IKDVAYYNDSKGTNTDAAIKGIKAM--NRPTFLIGG------GYDKKAEYDDWI 381
Query: 319 EPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
E + + +I G + I KT +G S + V +++AV +A + A +GDA++LSP
Sbjct: 382 EAFDGKVKELILLGATAEKIGKTAEAHGFSRIVY-VDTLEEAVEYASKHAVSGDAVLLSP 440
Query: 378 GCASFDEFRNFEHRGMVFQE 397
CAS+ F N+E RG F+E
Sbjct: 441 ACASWGMFPNYEVRGDRFKE 460
>gi|449941909|ref|ZP_21805736.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 11A1]
gi|450051072|ref|ZP_21840644.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NFSM1]
gi|449151466|gb|EMB55200.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 11A1]
gi|449202203|gb|EMC03142.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NFSM1]
Length = 451
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 110/377 (29%), Positives = 189/377 (50%), Gaps = 31/377 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVAEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTEKDFLVLNF-NQDLVKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q + +I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
+ + +I G S + V G++ ++ A A + A+ GD ++LSP
Sbjct: 367 PDIKGLKKMIILGESAPRLKHAAVQAGVT--YLDAKDVAQATRIAFQEASPGDVVLLSPA 424
Query: 379 CASFDEFRNFEHRGMVF 395
AS+D ++NFE RG F
Sbjct: 425 NASWDMYKNFEVRGDEF 441
>gi|22536654|ref|NP_687505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
agalactiae 2603V/R]
gi|76787986|ref|YP_329209.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
agalactiae A909]
gi|76798291|ref|ZP_00780538.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
agalactiae 18RS21]
gi|77405595|ref|ZP_00782685.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
agalactiae H36B]
gi|77411435|ref|ZP_00787781.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
agalactiae CJB111]
gi|421531607|ref|ZP_15977987.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
agalactiae STIR-CD-17]
gi|424049927|ref|ZP_17787478.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
agalactiae ZQ0910]
gi|30316025|sp|Q8E186.1|MURD_STRA5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|122063264|sp|Q3K2P4.1|MURD_STRA1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|22533493|gb|AAM99377.1|AE014213_16 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
agalactiae 2603V/R]
gi|76563043|gb|ABA45627.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
agalactiae A909]
gi|76586363|gb|EAO62874.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
agalactiae 18RS21]
gi|77162521|gb|EAO73486.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
agalactiae CJB111]
gi|77175817|gb|EAO78596.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
agalactiae H36B]
gi|389648572|gb|EIM70072.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
agalactiae ZQ0910]
gi|403643135|gb|EJZ03923.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
agalactiae STIR-CD-17]
Length = 451
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 102/372 (27%), Positives = 191/372 (51%), Gaps = 33/372 (8%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A V +++ +TG+NGK+T T + ++LN G + GN+G P SE
Sbjct: 99 VLTEVELAYLV--SESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNIGFPASE--- 153
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ + K V+E+SS+Q+ + K F P ++V+ NL P HL+ H + ++Y K
Sbjct: 154 -VVQAANDKDTL---VMELSSFQL-MGVKEFRPHIAVITNLMPTHLDYHGSFEDYVAAKW 208
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTASFEVPA 203
++ + M ++ +L F NQ +++ + + A I F K+D + K ++
Sbjct: 209 NIQNQMSSSDFLVLNF-NQGISKELA--KTTKATIVPFSTTEKVDGAYVQDKQLFYKGEN 265
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
+ + + ++ V G HN NA +A ++V L G+ + + T+ HR+Q +
Sbjct: 266 I-----MSVDDIGVPGSHNVENA-LATIAVAKL-AGISNQVIRETLSNFGGVKHRLQSLG 318
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
+ + G+++ +DSK+TN+ AT L K +++ GG + N F++LI +
Sbjct: 319 K-VHGISFYNDSKSTNILATQKALSGFDNTKVILIAGGLDR------GNEFDELIPDITG 371
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 383
+ ++ G S + + G++ +++DAV+ A +A GD I+LSP AS+D
Sbjct: 372 LKHMVVLGESASRVKRAAQKAGVTYS--DALDVRDAVHKAYEVAQQGDVILLSPANASWD 429
Query: 384 EFRNFEHRGMVF 395
++NFE RG F
Sbjct: 430 MYKNFEVRGDEF 441
>gi|384082071|ref|ZP_09993246.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [gamma
proteobacterium HIMB30]
Length = 446
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 109/394 (27%), Positives = 184/394 (46%), Gaps = 55/394 (13%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L Q+ ++S++ + P + ++A+TG+N KSTV + V ++L G VGGNLG
Sbjct: 85 LEQTSAHLISDIQVFRRAWPENQPLIAITGSNAKSTVTSLVAEILKADGRHVLVGGNLGP 144
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
+ L + + +AV+E+SS+Q+E + TV+ LN++PDHL+ H +M
Sbjct: 145 -------QALDLLAERTNESIAVLELSSFQLE-RTRRLKATVATCLNMSPDHLDWHGSMI 196
Query: 141 NYALTKCHLFS---------------HMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF 185
Y K +F +V + + F QH + H+F + +
Sbjct: 197 AYHQAKHRIFEGVGAIVVNSDDPLSQPLVPDQTPTIKFALQHPD----FHQFGVMVVDGK 252
Query: 186 PGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
+ + E A E+P + GR+ NA +AA + L +GVD
Sbjct: 253 EWISLGAEPWMAVSELP--------------MSGRYMIQNA-MAAFGICHL-VGVDKAIA 296
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL-GGQAK 304
+ + PHRM + ++GV +++DSK TN+ A+ T + ++ V LL GG++K
Sbjct: 297 VAAMLEYAGLPHRM-VERAPVKGVRFINDSKGTNVGASATAVSSVEADGHVYLLAGGESK 355
Query: 305 VLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR 364
+ + K + HH V FG + + + L AV + +A A
Sbjct: 356 ---DADLAIWAKTVRVHCHH--VFAFGRD-----RQRLIDALGDQATAVETLDEAFTLAV 405
Query: 365 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
+ A GD ++LSP CASFD+F+N++ RG F+ L
Sbjct: 406 QQAAAGDVVLLSPACASFDQFQNYQARGDYFETL 439
>gi|336065770|ref|YP_004560628.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Erysipelothrix
rhusiopathiae str. Fujisawa]
gi|334295716|dbj|BAK31587.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Erysipelothrix
rhusiopathiae str. Fujisawa]
Length = 424
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 120/407 (29%), Positives = 198/407 (48%), Gaps = 53/407 (13%)
Query: 3 MLWLFLLEFQLKATGLAC---LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVT 59
M L +F +K G+ L+ + +E++ A++ + K A++GTNGK+T T
Sbjct: 54 MSLLGTYDFVIKNPGIPNDHPLVSQFPNIYNEIEIASRFANHA-KFYAISGTNGKTTTTT 112
Query: 60 FVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYF 118
+ +ML A + GN+G LSEA + L +E+S++QME P+ F
Sbjct: 113 CLHEMLLKKDSAALLAGNVGYALSEAIYRDGDLTRD------VALEISAFQMEGTPS--F 164
Query: 119 CPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFN 178
P V ++NL+PDH++R+ + +Y K ++ S N K + +Q++ R
Sbjct: 165 SPEVYALMNLSPDHMDRYDEVDDYYKAKLNILS---NVKTFIRNCDDQNI------MRLT 215
Query: 179 LAWIGAFPGVKIDTEAKTASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLD 237
+ G + + +A E + + L ++ ++K++G+HN NAA AA
Sbjct: 216 QDYQGKVYDLSMTHDADICLREGWVYFLDNPLFEVSSLKLVGKHNLMNAAFAASLAFLA- 274
Query: 238 IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI 297
GV + + I+ HR++ V ++ GV + +DSKATN E+T L + K +I
Sbjct: 275 -GVKLSDIREVIQTFSGVEHRIEFVD-EVDGVRYYNDSKATNPESTEVCLQAFE--KPII 330
Query: 298 LLGGQAKVLNGQESNGFEK-----LIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIP-C 350
LL G GF+K L++P ++ + + FG S I + P
Sbjct: 331 LLAG-----------GFDKHISFDLLKPYDNRIKILFVFGESADQIREVF-------PFA 372
Query: 351 FAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
V MK A A+ A++GD IVLSP CAS+D+F NFE RG +F+E
Sbjct: 373 IKVDTMKTAFVEAKSQASSGDIIVLSPACASYDQFENFEIRGNIFKE 419
>gi|359727430|ref|ZP_09266126.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira weilii
str. 2006001855]
Length = 463
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 126/412 (30%), Positives = 184/412 (44%), Gaps = 87/412 (21%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V SE+D KI+ VTGT+GKST + V +L + GGNLG P +
Sbjct: 89 VFSEIDLGRFFFKG--KIIGVTGTDGKSTTTSLVSHLLKKDFSDLKEGGNLGVPFTSFCK 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
I+L AV+E+SSYQ+E VSV LNL DHLERHKTM+NY K
Sbjct: 147 ESISL---------AVLELSSYQLEDSFPLHL-NVSVFLNLAADHLERHKTMENYFRAKL 196
Query: 148 HL-------FSHMVNTKL------------GLLPFGNQHLNEAIKGHRFNLAWIGAFPGV 188
+ S +V+ K+ LL FG +EA+
Sbjct: 197 KIADLSNRDHSLIVSEKIREKILNSSSVRCKLLSFGRTTTSEAVLDEN------------ 244
Query: 189 KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
+E +T+ F V +S+ L G HN N A A L+ IG E++ S
Sbjct: 245 --SSEIRTSKF----VYDISRFYLP-----GTHNRENLAAAILASEA--IGGKPESIQSQ 291
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAKVLN 307
I + + PHR QI + QG+++++DSK+TNL + G+ K + ++LGG+ K
Sbjct: 292 IPLFKGLPHRFQIAG-ERQGISFINDSKSTNLHSMLAGMSTWKNLDQTCLILGGRPK--- 347
Query: 308 GQESNG--FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR 365
QE ++ L+ + V G + +W+ + + F+V N+ DA + ++
Sbjct: 348 -QEDPKLLYDFLMRGIG---SVFLIGEARS-VWEIGIRKVVGDRLFSVENLNDAFDLFKK 402
Query: 366 ----------------MATNG---DAIVLSPGCASFDEFRNFEHRGMVFQEL 398
NG AIV SP CASFD+++NFE RG F L
Sbjct: 403 GNVISKTVYGNVLKRIRLPNGAEIGAIVFSPACASFDQYKNFEERGNHFLSL 454
>gi|197334972|ref|YP_002156999.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
fischeri MJ11]
gi|226722954|sp|B5FB37.1|MURD_VIBFM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|197316462|gb|ACH65909.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio fischeri
MJ11]
Length = 440
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 111/389 (28%), Positives = 190/389 (48%), Gaps = 55/389 (14%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+ G +++ +++ A + + ++A+TG+NGKSTV G+M G++ VGGN+G
Sbjct: 89 IDKGIQIVGDIELFAWAV--NAPVIAITGSNGKSTVTDLTGEMAKAAGVKTAVGGNIG-- 144
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
AL + ++ V+E+SS+Q+E + + LNL+ DH++R++ M +
Sbjct: 145 -------FAALDLLEQDAELYVLELSSFQLETTSTLKLK-AAAFLNLSEDHMDRYQGMAD 196
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQH----LNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K +F H ++ ++ ++ + + +K F+ G I+ AK A
Sbjct: 197 YRQAKLRIFDH---AEVCIVNRDDKQTYPDVEKTLKSFGFDQGDYGCIEKDGIEYLAKDA 253
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDVEALNSTIEILRTP 255
+S L + + ++G+HN N+ A+A L +G++ L++T++ LRT
Sbjct: 254 ---------MSLLAANELGLVGKHNIANSLVAIALLDAVGIN-------LDATLDTLRTY 297
Query: 256 ---PHRMQIVHRDIQGVTWVDDSKATNLEATCTGL--MDLKGHKCVILLGGQAKVLNGQE 310
HR Q+V D G+ WV+DSKATN+ +T L + L+G K +L+GG K G +
Sbjct: 298 NGLTHRCQVV-ADNNGIRWVNDSKATNVASTLAALSGLQLEG-KLHLLVGGVGK---GAD 352
Query: 311 SNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 370
+ + LN + FG G V+ L M +AV G
Sbjct: 353 FSELSPALHDLN--LMMYCFGEDG----DQFVS--LDPRSLLCETMDEAVATLYPTLNKG 404
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVFQELA 399
D ++LSP CASFD++ NF RG F +LA
Sbjct: 405 DMVMLSPACASFDQYANFMARGDAFTQLA 433
>gi|416103052|ref|ZP_11589107.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|444345346|ref|ZP_21153367.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|348008323|gb|EGY48599.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|443543103|gb|ELT53370.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
Length = 434
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 190/420 (45%), Gaps = 74/420 (17%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA LQ+G V+ +++ + + I +A+TG+NGKSTV
Sbjct: 61 WLLESDLIVISPGLAVKTPEIQTALQAGVEVVGDIELFCREADKPI--VAITGSNGKSTV 118
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G+ +GGN+G P AL + + V+E+SS+Q+E Y
Sbjct: 119 TTLVAEMAKAAGLRVGMGGNIGIP---------ALSLLNQQHDLYVLELSSFQLE--TTY 167
Query: 118 FCPTV-SVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL-LP--------- 162
V + VLN+T DH+ R+ +++Y K ++++H ++N + L LP
Sbjct: 168 SLKAVAATVLNVTEDHINRYVDLQDYRHAKLNIYNHCQTAVINAEDALTLPTTQRPQKQV 227
Query: 163 -FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRH 221
FG H + +K N ++ A+ EA A E MK+ GRH
Sbjct: 228 SFGENHADYWLKTEN-NKTYLMAYD------EAVLACDE--------------MKLTGRH 266
Query: 222 NYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE 281
NY NA A G+++ + + + HR Q+ H GV W++DSKATN+
Sbjct: 267 NYMNALAAIALAQA--AGINLTGIRTALCAFGGLEHRFQVAHI-ADGVRWINDSKATNVG 323
Query: 282 ATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFGYSGVLIWK 339
+T L L+ K +LLGG K + F +L +N H FG G K
Sbjct: 324 STVAALTGLQVAGKLHLLLGGDGKGAD------FSELARLINQPHIYCYCFGRDG----K 373
Query: 340 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
L LS M+ A+ R GD ++LSP CAS D+F FE RG F L+
Sbjct: 374 QLA--ALSSQSQLFDTMEHAIAAIRPQLQAGDMVLLSPACASLDQFSCFEARGDEFTRLS 431
>gi|210622333|ref|ZP_03293102.1| hypothetical protein CLOHIR_01050 [Clostridium hiranonis DSM 13275]
gi|210154321|gb|EEA85327.1| hypothetical protein CLOHIR_01050 [Clostridium hiranonis DSM 13275]
Length = 455
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 171/341 (50%), Gaps = 22/341 (6%)
Query: 59 TFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYF 118
+ G++ G E +V GN+GNP+ +A + + F V E+SS+Q+E K F
Sbjct: 130 SLTGEIFEKAGKETYVVGNIGNPVIDA----VQAANEGASF---VTELSSFQLE-SIKDF 181
Query: 119 CPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFN 178
P+VS VLN+T DH+ RH TM+NY K +F + +L + ++ + N
Sbjct: 182 KPSVSAVLNITEDHMNRHHTMENYIDAKARVFMNQDKNDFCVLNYDDELTRALAEKCNAN 241
Query: 179 LAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNA-AVAALSVLGLD 237
+ + ++ + + ++ +++ + + G HN N A AA++ +
Sbjct: 242 VVFFSRLEKLEKGIYVENGDIIIDIDEKINLMKVCELSLPGGHNLENCMAAAAMAYVS-- 299
Query: 238 IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI 297
G+D+E + ++ + HR++ V ++++GV +V+DSK TN ++T + + + ++
Sbjct: 300 -GIDIEVIREVLKTFKAVEHRLEFV-KEVEGVKYVNDSKGTNPDSTIKAVQAYE-NPIIL 356
Query: 298 LLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANM 356
+ GG K + +++L+E + + ++ G + I + G + V +M
Sbjct: 357 IAGGYDK------GSTYDELLEIAKKNVKTLVLLGQTADKIEEAARRIGFT-DIHRVEDM 409
Query: 357 KDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
K+AV +A GD ++LSP CAS+ ++NFE RG F++
Sbjct: 410 KEAVKTCHDIAKEGDIVLLSPACASWGMYKNFEVRGKDFKD 450
>gi|157803837|ref|YP_001492386.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
canadensis str. McKiel]
gi|157785100|gb|ABV73601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
canadensis str. McKiel]
Length = 455
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 108/383 (28%), Positives = 187/383 (48%), Gaps = 41/383 (10%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
+ S++D + R++ +AV GTNGKST + +LN G++ V GN+G P +A
Sbjct: 90 ITSDIDLLFEK-SRNLNFIAVIGTNGKSTTTALISHILNSNGLDYPVAGNIGVPALKA-- 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+SK + V+E+SS+Q+++ K F ++V+LN+TPDHL+RHK M Y K
Sbjct: 147 -----KNSKDGY---VIELSSFQLDLV-KTFTAKIAVLLNITPDHLDRHKDMNGYIKAKS 197
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEA-IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
+F+ M ++ N + + +K + + F KI + + +
Sbjct: 198 KIFNRMDKNSYAVINIDNDYCRKIFMKLQQEQRIKLIPFSVTKILEKGISVVNNIINYSF 257
Query: 207 V--SQLQL-HNMKVMGRHNYHN--AAVAALSVLGLDIGVD-VEALNSTIEILRTPPHRMQ 260
S +L N + G HN N A+ A ++GL+ +EA++S ++ PHRMQ
Sbjct: 258 FGNSNFKLPFNKNLQGIHNCENIAASYAVAKIMGLEESTKIIEAISS----FQSLPHRMQ 313
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP 320
+ I +++ +DSKATN + L +K + L G + G ++++
Sbjct: 314 YIGS-INNISFYNDSKATN---AISALQSIKALDNIYWLAGGI-----PKEGGIKEIMPY 364
Query: 321 LNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVAN-MKDAVNHARRMATNGDA----IVL 375
LN + +G + + T+ N I F + N +K + A + A A I+L
Sbjct: 365 LNRIKKAYFYGQAKEMFADTVKN----IVDFVICNDLKQVFDLAYKDAVGDTAAVKNILL 420
Query: 376 SPGCASFDEFRNFEHRGMVFQEL 398
+P C+S+D+F+NFE RG +F +L
Sbjct: 421 APSCSSYDQFKNFEERGELFIKL 443
>gi|261867478|ref|YP_003255400.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Aggregatibacter actinomycetemcomitans D11S-1]
gi|365967276|ref|YP_004948838.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Aggregatibacter actinomycetemcomitans ANH9381]
gi|415769378|ref|ZP_11484166.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|416083718|ref|ZP_11586886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|444347757|ref|ZP_21155580.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
gi|261412810|gb|ACX82181.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348010529|gb|EGY50566.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|348657485|gb|EGY75074.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|365746189|gb|AEW77094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Aggregatibacter actinomycetemcomitans ANH9381]
gi|443548228|gb|ELT57524.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
Length = 434
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 190/420 (45%), Gaps = 74/420 (17%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA LQ+G V+ +++ + + I +A+TG+NGKSTV
Sbjct: 61 WLLESDLIVISPGLAVKTPEIQTALQAGVEVVGDIELFCREADKPI--VAITGSNGKSTV 118
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G+ +GGN+G P AL + + V+E+SS+Q+E Y
Sbjct: 119 TTLVAEMAKAAGLRVGMGGNIGIP---------ALSLLNQQHDLYVLELSSFQLE--TTY 167
Query: 118 FCPTV-SVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL-LP--------- 162
V + VLN+T DH+ R+ +++Y K ++++H ++N + L LP
Sbjct: 168 SLKAVAATVLNVTEDHMNRYVDLQDYRHAKLNIYNHCQTAVINAEDALTLPTTQRPQKQV 227
Query: 163 -FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRH 221
FG H + +K N ++ A+ EA A E MK+ GRH
Sbjct: 228 SFGENHADYWLKTEN-NKTYLMAYD------EAVLACDE--------------MKLTGRH 266
Query: 222 NYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE 281
NY NA A G+++ + + + HR Q+ H GV W++DSKATN+
Sbjct: 267 NYMNALAAIALAQA--AGINLTGIRTALCAFGGLEHRFQVAHI-ADGVRWINDSKATNVG 323
Query: 282 ATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFGYSGVLIWK 339
+T L L+ K +LLGG K + F +L +N H FG G K
Sbjct: 324 STVAALTGLQVAGKLHLLLGGDGKGAD------FSELARLINQPHIYCYCFGRDG----K 373
Query: 340 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
L LS M+ A+ R GD ++LSP CAS D+F FE RG F L+
Sbjct: 374 QLA--ALSSQSQLFDTMEHAIAAIRPQLQAGDMVLLSPACASLDQFSCFEARGDEFTRLS 431
>gi|357975767|ref|ZP_09139738.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
KC8]
Length = 427
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 110/353 (31%), Positives = 160/353 (45%), Gaps = 42/353 (11%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K++ +TGTNGKST V +L+ G+ A +GGN+G P+ P+ V V
Sbjct: 110 KVVGITGTNGKSTTTALVRHILDTAGVPALMGGNIGLPILSR--------DPLPEGGVYV 161
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SSYQ+++ C V+V+LN+TPDHL+R+ + YA +K LF+ ++ ++ +
Sbjct: 162 LELSSYQIDLTYSLDC-DVAVLLNITPDHLDRYDGFEGYAASKARLFAMQGPGRVAVVDY 220
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
+ HR V D E F VV Q + G HN
Sbjct: 221 AAE------MAHR-----------VLDDAEDPMIQF---ISDVVIGDQAAWPALQGPHNA 260
Query: 224 HNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEAT 283
N AVA L GV A+ + PHRM+ V GV +V+DSKATN +T
Sbjct: 261 QNVAVATAVARAL--GVGEAAIEQGLRTYPGLPHRMERVAEK-GGVLFVNDSKATNATST 317
Query: 284 CTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVN 343
L K +LGG K ++ + H G +G + + L +
Sbjct: 318 APALAAYP--KIHWILGGLPK------TDELDACAPHYAHVVAAYVIGDAGPMFARILRD 369
Query: 344 NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
G P + AV A A GD ++LSP CASFD+FR+FE RG F+
Sbjct: 370 AGK--PVTESGTLDQAVRDAAAAAKPGDVVMLSPACASFDQFRDFEARGDAFR 420
>gi|423346169|ref|ZP_17323857.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides
merdae CL03T12C32]
gi|409220967|gb|EKN13920.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides
merdae CL03T12C32]
Length = 453
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 113/397 (28%), Positives = 194/397 (48%), Gaps = 47/397 (11%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G ++SE++FA + K++ +TG+NGK+T +L G++A
Sbjct: 84 KAPIIKKLKEKGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTMLTYHILRQAGVDAG 141
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+GN L AL ++ V V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 142 LAGNVGNSL--------ALQVAEDPHAVYVIELSSFQLD--NMYDFKADIAILLNITPDH 191
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP----- 186
L+ + M+NY K + + + + + I R A + F
Sbjct: 192 LDCYNYEMQNYVDAKFRIIRNQTAEDAFIFWNDDPIIAREI-AKRHPQATLYPFAETHEA 250
Query: 187 GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
GVK TE K E + L + + G HN +N+ + ++ +DI E L
Sbjct: 251 GVKGYTEDKKIIIETSNGTFTMEEDL--LALSGTHNLYNSLASGIASKLVDIHD--ENLR 306
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVL 306
+++ HR++ V R ++GV +++DSKATN+ + L + V++LGG K
Sbjct: 307 ASLSDFTGVEHRLEKVAR-VRGVDFINDSKATNVNSCWYALQSMTT-PLVLILGGTDK-- 362
Query: 307 NGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGL------SIPCFAVA-NMKDA 359
G + + E+L++ H LI+ + N L +P A +M++A
Sbjct: 363 -GNDYSEIEELVKKKVH-----------ALIFLGVDNTKLHGFFDGKVPVIEDARSMEEA 410
Query: 360 VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
V A ++A GD ++LSP CASFD F+++E RG F+
Sbjct: 411 VAKAYKLAEKGDTVLLSPCCASFDLFKSYEDRGDQFK 447
>gi|401682235|ref|ZP_10814129.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
sp. AS14]
gi|400184671|gb|EJO18909.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
sp. AS14]
Length = 450
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 107/379 (28%), Positives = 182/379 (48%), Gaps = 37/379 (9%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A + I+ +TG+NGK+T T + Q+L G + GN+G P S+ A
Sbjct: 99 VITEVELAYLI--SEAPIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSGNIGFPASQVAQ 156
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
SSK V+E+SS+Q+ + + F P ++V+ NL P HL+ H ++++YA K
Sbjct: 157 TA----SSKDTL---VMELSSFQL-MGIEAFHPQIAVITNLMPTHLDYHGSVEDYAAAKW 208
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTASFEVPA 203
++ +M +L F E + A + F K+D E +F A
Sbjct: 209 NIQKNMTADNYLVLNFNQDWAKEMASQTQ---ATVVPFSTTEKVDGAYLEGDVLTFRGEA 265
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
+ +Q + V G HN N A+A ++V L G+D + + + HR+Q V
Sbjct: 266 I-----MQAAEIGVPGSHNVEN-ALATIAVAKLR-GIDNQTIKEVLSAFGGVKHRLQYVG 318
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
R + V + +DSK+TN+ AT L K +++ GG + N F++L+ +
Sbjct: 319 R-VNEVAFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELVPDIKG 371
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 383
+ ++ G S + + G+S +++DA + A A GD ++LSP AS+D
Sbjct: 372 LKKMVILGQSAARVKRAADQAGVS--YLDATDVRDAAHKAFAQAEPGDIVLLSPANASWD 429
Query: 384 EFRNFEHRG----MVFQEL 398
+ NFE RG F+EL
Sbjct: 430 MYSNFEVRGDEFLAAFEEL 448
>gi|229061518|ref|ZP_04198862.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
AH603]
gi|228717752|gb|EEL69402.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
AH603]
Length = 450
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 103/371 (27%), Positives = 175/371 (47%), Gaps = 30/371 (8%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
+++E++ A + + + +TG+NGK+T +ML + GN+G E A
Sbjct: 99 IVTEVELAYSI--SAAPFVGITGSNGKTTTTMLTFEMLKEGQKYPVIAGNIGTVACEVA- 155
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ +V V E+SS+Q+ + + F P ++ LNL HL+ H T K Y L K
Sbjct: 156 ------QLAKENEVVVTELSSFQL-MGVESFQPKIAAFLNLFEAHLDYHGTKKEYGLAKA 208
Query: 148 HLFSHMVNTKLGLLPFGNQH---LNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
++F + T ++ + L+ KG + F KI +
Sbjct: 209 NIFKNQTETDYSIINADDADVMALSAYSKGKKV------LFSATKIIEDGAYIKDNALYF 262
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+++ ++ + G+HN N +AA+S+ L +GV EA+ + ++ HR++ V
Sbjct: 263 KGEKVVKVSDIVLPGKHNLENI-LAAMSIAKL-LGVSNEAITAVLKSFTGVKHRLEYVTT 320
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH 324
I + +DSKATN+ AT L V+L GG + N F+ LI H
Sbjct: 321 -INNRKFYNDSKATNMLATEKALSAFT-QPIVLLAGGLDR------GNEFDDLIPYFKHV 372
Query: 325 RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 384
+ ++TFG + + + GL + +V + DAV A +T+GD I+LSP CAS+D+
Sbjct: 373 KAIVTFGQTAPKLVRAAEKAGLDV-IESVDTLDDAVVKAYAHSTDGDVILLSPACASWDQ 431
Query: 385 FRNFEHRGMVF 395
F+ FE RG +F
Sbjct: 432 FKTFEERGDIF 442
>gi|90413038|ref|ZP_01221036.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Photobacterium profundum 3TCK]
gi|90326053|gb|EAS42492.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Photobacterium profundum 3TCK]
Length = 447
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 120/411 (29%), Positives = 194/411 (47%), Gaps = 53/411 (12%)
Query: 3 MLWLFLLEFQLKATGLACLL-------QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKS 55
M WL + + + G+A +G ++ +++ A+ + + + +A+TG+NGKS
Sbjct: 63 MNWLLEADLIVASPGIALATPELVAAKAAGIEIVGDIELFARAVTKPV--VAITGSNGKS 120
Query: 56 TVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPN 115
TV + +G+M I VGGN+G AL + + V+E+SS+Q+E +
Sbjct: 121 TVTSLIGEMAKEASINVGVGGNIG---------FAALDMLANEHDLYVLELSSFQLETTS 171
Query: 116 KYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV-----NTKLGLLPFGNQHLNE 170
+V LNL+ DH++R+ +++Y+L K +F H L LP H
Sbjct: 172 SLELKA-AVYLNLSEDHMDRYDGIEDYSLAKMRIFEHAELAVYNRDDLATLPTSFSH--- 227
Query: 171 AIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAA 230
I F+ G V +D E E AV ++ +++ ++GRHN N+ A
Sbjct: 228 KITSFGFDNQDYGL---VTLDGE------EFLAVDKQPIMKTNDIALVGRHNVANSLAAL 278
Query: 231 LSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL--M 288
++I D +A ++ HR Q+V V WV+DSKATNL +T L +
Sbjct: 279 ALADAVNI--DHQAACRALQRYNGLAHRCQLVVNQ-HDVKWVNDSKATNLASTLAALKGL 335
Query: 289 DLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSI 348
+L G K +L+GG K G + + + ++ LN + FG G + +LV+ +
Sbjct: 336 NLPG-KLHLLVGGDGK---GADFSELKPVLADLNVQ--LYCFGRDGNQ-FMSLVDAPICT 388
Query: 349 PCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
M +A+ A A GD I+LSP CASFD+F NF RG F E A
Sbjct: 389 EA-----MAEAMTIAADTAQKGDMILLSPACASFDQFPNFMARGDAFVEQA 434
>gi|37527520|ref|NP_930864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|60390525|sp|Q7N145.1|MURD_PHOLL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|36786955|emb|CAE16029.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
(UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
(D-glutamic acid adding enzyme) [Photorhabdus
luminescens subsp. laumondii TTO1]
Length = 436
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 115/371 (30%), Positives = 174/371 (46%), Gaps = 61/371 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV + VG+M + VGGN+G P AL K Q+ V+
Sbjct: 107 IVAITGSNGKSTVTSLVGEMAKAANWQVGVGGNIGLP---------ALELLKKSCQLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E T + VLN+T DH++R+ + + Y K ++ +VN +
Sbjct: 158 ELSSFQLET-TYSLNATAAAVLNVTEDHMDRYPQGVSQYRAAKLRIYHQAKRCIVNAQDP 216
Query: 160 L-LP---FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM 215
L LP ++ ++ + + L AF +K+ ++ A+ E+
Sbjct: 217 LTLPEMGMDSRCVSFGVDCGDYQLDSENAF--LKVHNQSLLATNEI-------------- 260
Query: 216 KVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDS 275
K+ GRHNY N VA L +G+ EA +T+ + HR Q+ + +GV W++DS
Sbjct: 261 KLTGRHNYANGLVAL--ALADAVGIPREASLATLTVYPGLDHRFQLARLN-KGVRWINDS 317
Query: 276 KATNLEATCTGL--MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRC-----VI 328
KATN+ +T L ++L+G +LLGG K + PL C +
Sbjct: 318 KATNVGSTMAALDGLNLEG-TLYLLLGGDGKSAD----------FSPLKPFLCGNKVQLY 366
Query: 329 TFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 388
FG G K L I M+ A+ GD ++LSP CAS D+FRNF
Sbjct: 367 CFGRDG----KQLAQLRPEIATL-TETMEQAIRDIAPRLVAGDMVLLSPACASLDQFRNF 421
Query: 389 EHRGMVFQELA 399
E RG F LA
Sbjct: 422 EQRGHEFTRLA 432
>gi|421093367|ref|ZP_15554091.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
borgpetersenii str. 200801926]
gi|410363350|gb|EKP14379.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
borgpetersenii str. 200801926]
gi|456888659|gb|EMF99617.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
borgpetersenii str. 200701203]
Length = 462
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 114/391 (29%), Positives = 174/391 (44%), Gaps = 78/391 (19%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
KI+ +TGT+GKST + V +L + GGNLG P + I+L AV
Sbjct: 103 KIIGITGTDGKSTTTSLVAHLLKKDFSDLKEGGNLGIPFTSFCKEPISL---------AV 153
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHL-------FSHMVNT 156
+E+SSYQ+E + VSV LNL PDHLERH+TM+NY K + S +V+
Sbjct: 154 LELSSYQLEDSSPLDL-NVSVFLNLAPDHLERHETMENYFRAKLKIADLQNPNHSLIVSE 212
Query: 157 KL------------GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K+ LL FG +EAI +E +T+ F +
Sbjct: 213 KIREKILNSTSVRCKLLSFGRATTSEAILDES--------------SSEIRTSKF----I 254
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+S+ L G HN N A A L+ IG E++ + I PHR QI
Sbjct: 255 YDISRFYLP-----GTHNRENLAAAILASEA--IGGKPESIQAQIPFFMGLPHRFQIAGE 307
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
+G+++++DSK+TNL + G+ K + ++LGG+ K + + F +
Sbjct: 308 K-RGISFINDSKSTNLHSMLAGMSTWKNLDRTCLILGGRPKQEDPKPLYDFL-----MRR 361
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVN------------HARRMATNGD 371
CV+ G + +W + N + F+V N+ +A R++ + +
Sbjct: 362 IGCVVLIGEARS-VWGKGIRNVIGEKLFSVENLDEAFKIFKKWNVISESPEIRKIRLSSE 420
Query: 372 ----AIVLSPGCASFDEFRNFEHRGMVFQEL 398
V SP C SFD+++NFE RG F L
Sbjct: 421 ITISYFVFSPACVSFDQYKNFEERGNHFLSL 451
>gi|416073893|ref|ZP_11584356.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|444338035|ref|ZP_21151921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|348007114|gb|EGY47456.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|443545839|gb|ELT55581.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
Length = 434
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 190/420 (45%), Gaps = 74/420 (17%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA LQ+G V+ +++ + + I +A+TG+NGKSTV
Sbjct: 61 WLLESDLIVISPGLAVKTPEIQTALQAGVEVVGDIELFCREADKPI--VAITGSNGKSTV 118
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G+ +GGN+G P AL + + V+E+SS+Q+E Y
Sbjct: 119 TTLVAEMAKAAGLRVGMGGNIGIP---------ALSLLNQQHDLYVLELSSFQLE--TTY 167
Query: 118 FCPTV-SVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL-LP--------- 162
V + VLN+T DH+ R+ +++Y K ++++H ++N + L LP
Sbjct: 168 SLKVVAATVLNVTEDHMNRYVDLQDYRHAKLNIYNHCQTAVINAEDALTLPTTQRPQKQV 227
Query: 163 -FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRH 221
FG H + +K N ++ A+ EA A E MK+ GRH
Sbjct: 228 SFGENHADYWLKTEN-NKTYLMAYD------EAVLACDE--------------MKLTGRH 266
Query: 222 NYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE 281
NY NA A G+++ + + + HR Q+ H GV W++DSKATN+
Sbjct: 267 NYMNALAAIALAQA--AGINLTGIRTALCAFGGLEHRFQVAHI-ADGVRWINDSKATNVG 323
Query: 282 ATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFGYSGVLIWK 339
+T L L+ K +LLGG K + F +L +N H FG G K
Sbjct: 324 STVAALTGLQVAGKLHLLLGGDGKGAD------FSELARLINQPHIYCYCFGRDG----K 373
Query: 340 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
L LS M+ A+ R GD ++LSP CAS D+F FE RG F L+
Sbjct: 374 QLA--ALSSQSQLFDTMEHAIAAIRPQLQAGDMVLLSPACASLDQFSCFEARGDEFTRLS 431
>gi|259907415|ref|YP_002647771.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Erwinia
pyrifoliae Ep1/96]
gi|387870165|ref|YP_005801535.1| protein murD [Erwinia pyrifoliae DSM 12163]
gi|224963037|emb|CAX54520.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia pyrifoliae
Ep1/96]
gi|283477248|emb|CAY73160.1| murD [Erwinia pyrifoliae DSM 12163]
Length = 438
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 113/366 (30%), Positives = 170/366 (46%), Gaps = 43/366 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + GGN+G P A + P+ Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGWQVGTGGNIGLP----ALTLLQQPA-----QLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + + +LN+T DH++R+ M+ Y K ++ + +
Sbjct: 158 ELSSFQLETASSLHA-AAATILNVTEDHMDRYPLGMQQYRAAKLRIYENATVCVVN---- 212
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ + ++G GA G + + + V V++ ++H ++G+HN
Sbjct: 213 ADDAMTMPVRGADARCVSFGADVGDYHLTRQQGSTWLRVQGEKVLNTDEMH---LVGQHN 269
Query: 223 YHNAAVAALSV--LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
Y NA A +GL ++AL + PHR Q VH GV W++DSKATN+
Sbjct: 270 YTNALAALALADAVGLPRATSLKALTT----FNGLPHRFQRVHEH-NGVRWINDSKATNV 324
Query: 281 EATCTGLMDLKGHKCV-ILLGGQAKVLNGQESNGFEKLIEPLNHHRCVI-TFGYSGVLIW 338
+T L L + +LLGG K S F L L R I FG G +
Sbjct: 325 GSTEAALNGLHPAGMLWLLLGGDGK------SADFSPLTRYLQGDRIRIYCFGRDGAELA 378
Query: 339 KTLVNNGLSIPCFAV--ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
P AV M +AV GD ++LSP CAS D+F+NFE RG +F
Sbjct: 379 ALR-------PEVAVQTETMAEAVQQIATQVQPGDLVLLSPACASLDQFKNFEQRGDLFA 431
Query: 397 ELAFSA 402
+LA A
Sbjct: 432 QLAREA 437
>gi|408492202|ref|YP_006868571.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Psychroflexus
torquis ATCC 700755]
gi|408469477|gb|AFU69821.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Psychroflexus
torquis ATCC 700755]
Length = 447
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 108/393 (27%), Positives = 190/393 (48%), Gaps = 50/393 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L +SG +++SE++FA+ +I + +TG+NGK+TV V +L + G+ + GN+G
Sbjct: 82 LRESGIKIVSEIEFASWFTGANI--IGITGSNGKTTVTNMVYHILKNAGLSVSMAGNVGF 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLER-HKTM 139
+E ++ F V+E+SS+Q++ F P ++++ ++TPDHL+R H
Sbjct: 140 SFAEQV--------ARQSFHNYVLELSSFQLDGVED-FRPHIAILTSITPDHLDRYHDNF 190
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA---------FPGVKI 190
+ Y K + + TK L + K + + W+ F I
Sbjct: 191 QEYIQAKFKITKNQ--TKDDFLIYN--------KDDKVIVNWLEKNTVKAQLIPFTNTTI 240
Query: 191 DTEAKTASFEVPAVGV-----VSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
T+ +A E + + + + ++++ V G HN NA A+ + L I + +
Sbjct: 241 MTDL-SAFIENNKINIKLNHNLFTMSVNDLSVKGDHNTRNAMAASTAARLLKIR--KQTI 297
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKV 305
++E + HR++ + + I V +++DSKATN+ AT L D V ++GG K
Sbjct: 298 RESMESFQGVEHRLEQLGK-INKVAFINDSKATNINATFYAL-DSMTAPTVWIVGGVDK- 354
Query: 306 LNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR 364
N +E L+ +N + ++ G I+ + N +I +NM DAV A
Sbjct: 355 -----GNVYEDLLPLVNEKVKAIVCLGIDNQKIYNSFSNCVDTI--IESSNMTDAVAKAY 407
Query: 365 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
+ + DA++LSP CASFD F N+E RG F+E
Sbjct: 408 GLTEDNDAVLLSPACASFDLFENYEDRGRQFKE 440
>gi|444424609|ref|ZP_21220064.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
campbellii CAIM 519 = NBRC 15631]
gi|444242101|gb|ELU53617.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
campbellii CAIM 519 = NBRC 15631]
Length = 437
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 117/394 (29%), Positives = 180/394 (45%), Gaps = 57/394 (14%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ +L G V+ +++ A + + + +A+TG+NGKSTV G M G+ VGGN
Sbjct: 85 IQAVLAKGTPVVGDIELFAWAVDKPV--IAITGSNGKSTVTDLTGVMAKAAGLTVGVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P AL + + V+E+SS+Q+E + + LNL+ DH++R++
Sbjct: 143 IGVP---------ALDLLEQDADLYVLELSSFQLETTSSLKLK-AAAFLNLSEDHMDRYE 192
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
M +Y K +F N +L ++ N+ E L G+ D +A
Sbjct: 193 GMSDYRQAKLRIFD---NAELAVV---NRDDQETFPDTETPLVTFGS------DEQA--- 237
Query: 198 SFEVPAVGVVSQLQLH--------NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
+ + A G + L H +K++G+HN NA L VL L DV+ + ++
Sbjct: 238 -YGLEADGKRTWLLDHGQRVIASDELKLVGKHNLANA----LVVLALLKAADVD-YHKSL 291
Query: 250 EILRTPP---HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILLGGQAKV 305
L+T HR Q+V D +GV WV+DSKATN+ +T L L+ K +L+GG K
Sbjct: 292 NALKTYTGLTHRCQVV-ADNRGVKWVNDSKATNIASTMAALSGLESTGKLYLLVGGVGK- 349
Query: 306 LNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR 365
G + + + LN C FG G L M+D +
Sbjct: 350 --GADFTPLKPIFATLNLQLCC--FGADGDEFMP------LHESATRFDTMEDVIQQISS 399
Query: 366 MATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
GD ++LSP CASFD+F NF RG F LA
Sbjct: 400 QLKTGDMVMLSPACASFDQFDNFMARGDAFAALA 433
>gi|154485087|ref|ZP_02027535.1| hypothetical protein EUBVEN_02810 [Eubacterium ventriosum ATCC
27560]
gi|149734040|gb|EDM50159.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Eubacterium
ventriosum ATCC 27560]
Length = 454
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 111/380 (29%), Positives = 185/380 (48%), Gaps = 29/380 (7%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
++G + E++ A VI + K+ A+TGTNGK+T VG+++ + + V GN+GNP
Sbjct: 91 EAGVPIWGEIELA-YVIGKG-KLAAITGTNGKTTTTALVGEIMANYYDKVDVVGNIGNPY 148
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ AF V V E+SS+Q+E + F P VS VLN+TPDHL RH TM+ Y
Sbjct: 149 TTTAFDST-------DDTVTVAEISSFQLETIHT-FKPDVSAVLNITPDHLNRHYTMECY 200
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF----PGVKIDTEAKTAS 198
K + + + + +L + + L E + W + PGV + E K
Sbjct: 201 TDVKMSIAKNQDSNQPIVLNYEDPILREYAGKLTNRIIWFSSKQKVNPGVYL--EGKNII 258
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
+ + ++G HN N A + +D+ VD+ + TI + PHR
Sbjct: 259 Y-ADGKKETFVTTTEDTTLVGIHNVENIMAAIAISINMDVPVDI--IRETIRKFKAVPHR 315
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
++ V I V + +DSK TN +A+ + + +++ GG K ++ F+
Sbjct: 316 IEYVET-INDVIYYNDSKGTNTDASIKAIEAM-SRPTILIAGGYDKKVS------FDDWA 367
Query: 319 EPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
E +C++ G + I T+ +G + F ++K+AV+ + A GDA++LSP
Sbjct: 368 EAFGDKVKCLVLLGQTAEQIADTVKKHGFTNIIFT-ESLKEAVDECAKNAKPGDAVLLSP 426
Query: 378 GCASFDEFRNFEHRGMVFQE 397
CAS+ F N+E RG +F+E
Sbjct: 427 ACASWGMFDNYEQRGDMFKE 446
>gi|398337710|ref|ZP_10522415.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira kmetyi
serovar Malaysia str. Bejo-Iso9]
Length = 464
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 117/404 (28%), Positives = 187/404 (46%), Gaps = 62/404 (15%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V SE+D + +I+ VTGT+GKST + +L + GGNLG P +
Sbjct: 80 VFSEIDLGKKFF--HGRIIGVTGTDGKSTTTSLTAHLLRKDFSDLQEGGNLGIPFTSF-- 135
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
SK +AV+E+SSYQ++ + VSV LNL PDHLERHKTM+NY K
Sbjct: 136 -------SKKPISLAVLELSSYQLD-DSSSLNLNVSVFLNLAPDHLERHKTMENYFQAKL 187
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
+ + + N L+ ++ + E I+G + +F T + A + ++ +
Sbjct: 188 KI-ADLFNPGHTLVV--SEKIREKIEGSVSFQCKLKSFG----RTSSSDAFLDENSLTIR 240
Query: 208 SQLQLHNMK---VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+ L +++ + G HN N A + L+ IG E++ + I + + PHR QI
Sbjct: 241 TSLFTYDISRFHLPGTHNRENLAASILAAEA--IGGKPESIQAQIPLFQGLPHRFQIAGE 298
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKG--HKCVILLGGQAKVLNGQESNGFEKLIEPLN 322
G+++++DSK+TNL + G+ K C+I LGG+ K + + F LI +
Sbjct: 299 K-HGLSFINDSKSTNLHSMLAGMATWKNLPQTCLI-LGGRPKQEDPKPLYDF--LIRGIG 354
Query: 323 HHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAV------NHARRMATNGD----- 371
V+ G + +W+ + N + FA N+ DA N A++ D
Sbjct: 355 ---SVVLIGEARS-VWEEGIRNTIGDKLFAAENLNDAFGIFKNGNIISETASSADKTDVS 410
Query: 372 -----------------AIVLSPGCASFDEFRNFEHRGMVFQEL 398
++V SP CASFD+++NFE RG F L
Sbjct: 411 EKTVSKKIRLSNGAEIGSVVFSPACASFDQYKNFEERGNHFLSL 454
>gi|290580950|ref|YP_003485342.1| D-glutamic acid adding enzyme [Streptococcus mutans NN2025]
gi|449969786|ref|ZP_21813428.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 2VS1]
gi|450028366|ref|ZP_21832104.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans G123]
gi|450092748|ref|ZP_21856220.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans W6]
gi|450149397|ref|ZP_21876104.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 14D]
gi|450165907|ref|ZP_21882077.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans B]
gi|254997849|dbj|BAH88450.1| putative D-glutamic acid adding enzyme [Streptococcus mutans
NN2025]
gi|449173898|gb|EMB76430.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 2VS1]
gi|449195779|gb|EMB97088.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans G123]
gi|449217996|gb|EMC18022.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans W6]
gi|449234505|gb|EMC33510.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 14D]
gi|449240257|gb|EMC38944.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans B]
Length = 451
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 111/380 (29%), Positives = 188/380 (49%), Gaps = 37/380 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTEKDFLVLNF-NQDLAKDL-ANQTQTKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV E + T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNETIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q + +I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR---RMATNGDAIVL 375
+ + +I G S + V G++ N KD R + A+ GD ++L
Sbjct: 367 PDIKGLKKMIILGESAPRLKHAAVQAGVT-----YLNAKDVAQATRIAFQEASPGDVVLL 421
Query: 376 SPGCASFDEFRNFEHRGMVF 395
SP AS+D ++NFE RG F
Sbjct: 422 SPANASWDMYKNFEVRGDEF 441
>gi|322380110|ref|ZP_08054363.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthase [Helicobacter
suis HS5]
gi|321147457|gb|EFX42104.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthase [Helicobacter
suis HS5]
Length = 423
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 115/385 (29%), Positives = 180/385 (46%), Gaps = 43/385 (11%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIK------ILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74
L+ + K + SE D+ + + K I+ ++GTNGK+T +G +L A V
Sbjct: 70 LVVASKHLCSEYDYIKGLWQTNRKHLPFPTIIFISGTNGKTTTARMLGLLLK--SSNAQV 127
Query: 75 GGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLE 134
GGN+G PL + + I KP + V ++E SS+ + N + P + ++L L+ DHL
Sbjct: 128 GGNIGIPLIDL-YTQIKAEQRKPPY-VWILETSSFTLHYTN-HLVPQIYILLPLSQDHLS 184
Query: 135 RHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEA 194
H+ +NY V KL L F Q +GH F A + P VK
Sbjct: 185 WHENHENY-----------VEAKLKPLSFMQQ------EGHVFLHASLKDHPTVKALINP 227
Query: 195 KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV-DVEALNSTIEILR 253
F + + Q+ L K+ + A+ ALSV L GV D + LN+ +
Sbjct: 228 PNLLFYQDSKHLAQQMGLQISKIRFEEPFLLDALLALSVAKLYSGVADYDLLNTYM---- 283
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
PHR++I Q TWVDDSKATN++AT L KG ++LGG K ++
Sbjct: 284 IQPHRIEIFLDQDQN-TWVDDSKATNIDATLKALDRFKGCYIHLILGGDTKGMD------ 336
Query: 314 FEKLIEPLNHHRC-VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 372
+ L E L H + + G S ++ + + I +++ AV H ++ G
Sbjct: 337 LKPLFEVLAHMQIEIYAIGASAPMVMQ--MAQDYHIRAHLCHDLRIAVEHIKQNLRPGQI 394
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQE 397
+LSP AS D+F +++HRG+ F+E
Sbjct: 395 GMLSPSAASLDQFASYKHRGITFKE 419
>gi|422023489|ref|ZP_16369994.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Providencia
sneebia DSM 19967]
gi|414094257|gb|EKT55927.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Providencia
sneebia DSM 19967]
Length = 441
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 114/359 (31%), Positives = 169/359 (47%), Gaps = 37/359 (10%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M GI VGGN+G P AL Q+ V+
Sbjct: 112 IIAITGSNGKSTVTTLVGEMAKPSGISVGVGGNIGIP---------ALSLLNQGHQLYVL 162
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + VLN+T DH++R+ + ++ Y K H++ + N +
Sbjct: 163 ELSSFQLETTTS-LQALAATVLNVTEDHMDRYPSGLEQYREAKLHIYDNAQNCVV----- 216
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
N + H+ + +I +F D T + A G V L + ++ + G+HNY
Sbjct: 217 -NAQDPLTLPRHKMKVPYI-SFGVNSGDYYFDTQKRVLVAKGEV-LLDVDSIHLTGQHNY 273
Query: 224 HNAAVAALSVLGLDI-GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
NA A DI GVD A ++ HR Q+V + GV W++DSKATN+ +
Sbjct: 274 TNALAALALA---DIAGVDRSASLDVLKHYTGLEHRFQLVLFN-NGVRWINDSKATNVGS 329
Query: 283 TCTGLMDLKGHKCV-ILLGGQAKVLNGQESNGFEKLIEPLNHHRC-VITFGYSGVLIWKT 340
T L LK + +LLGG K S F L L + FG G I +
Sbjct: 330 TEAALNGLKVDGVLHLLLGGDGK------SADFSSLKPYLAKKNVRLYCFGKDGAQIAQL 383
Query: 341 LVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
M+ + + + GD ++LSP CAS D+F+NFE RG +F +LA
Sbjct: 384 EPEKA-----HLTETMEQGIRYLAPLIKEGDMVLLSPACASIDQFKNFEQRGAIFAQLA 437
>gi|422299950|ref|ZP_16387493.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
avellanae BPIC 631]
gi|407987998|gb|EKG30657.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
avellanae BPIC 631]
Length = 448
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 113/370 (30%), Positives = 178/370 (48%), Gaps = 55/370 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KST+ T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTITTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + VS+L
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKFLAFQFDNLMPVSEL-- 268
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
KV G HN NA A +G+ +A+ +++ HR Q + R+ GV +
Sbjct: 269 ---KVRGAHNQANALAALALGNA--VGLPFDAMLASLREFTGLEHRCQWL-RERNGVDYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCV 327
+DSKATN+ A + D+ G K V++ GG K + F L P+ + R
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGAD------FSGLRAPVAQYCRAA 375
Query: 328 ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ G LI + L G ++P V ++ A + +A +GDA++LSP CAS D F+N
Sbjct: 376 VLLGRDAELIAQAL---GDAVPLIRVDTVQAAAERSAELAQHGDAVLLSPACASLDMFKN 432
Query: 388 FEHRGMVFQE 397
+E RG VF +
Sbjct: 433 YEERGRVFAQ 442
>gi|422821721|ref|ZP_16869914.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis SK353]
gi|324990672|gb|EGC22608.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis SK353]
Length = 459
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 106/379 (27%), Positives = 183/379 (48%), Gaps = 37/379 (9%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A + I+ +TG+NGK+T T + Q+L G + GN+G P S+ A
Sbjct: 108 VITEVELAYLI--SEAPIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSGNIGFPASQVAQ 165
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
S+K V+E+SS+Q+ + + F P ++V+ NL P HL+ H +++ YA+ K
Sbjct: 166 TA----SNKDTL---VMELSSFQL-MGIEAFYPQIAVITNLMPTHLDYHGSVEEYAVAKW 217
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTASFEVPA 203
++ +M +L F E + A + F K+D E +F A
Sbjct: 218 NIQKNMTADDYLVLNFNQDWAKEMASQTQ---ATVVPFSTTEKVDGAYLEGDVLTFRGEA 274
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
+ +Q+ + V G HN N A+A ++V L G+D + + + HR+Q V
Sbjct: 275 I-----MQVAEIGVPGSHNVEN-ALATIAVAKLR-GIDNQTIKEVLSAFGGVKHRLQYVG 327
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
+ + V + +DSK+TN+ AT L K +++ GG + N F++L+ L
Sbjct: 328 Q-VNEVAFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELVPDLKG 380
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 383
+ ++ G S + + G+S +++DA + A A GD ++LSP AS+D
Sbjct: 381 LKKMVILGQSAARVKRAADQAGVS--YLDATDVRDAAHKAFAQAEPGDIVLLSPANASWD 438
Query: 384 EFRNFEHRG----MVFQEL 398
+ NFE RG F+EL
Sbjct: 439 MYSNFEVRGDEFLAAFEEL 457
>gi|312134659|ref|YP_004001997.1| udp-n-acetylmuramoylalanine/d-glutamate ligase
[Caldicellulosiruptor owensensis OL]
gi|311774710|gb|ADQ04197.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
[Caldicellulosiruptor owensensis OL]
Length = 455
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 117/380 (30%), Positives = 188/380 (49%), Gaps = 27/380 (7%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V+ E++ A + +S I+A+TGTNGK+T T VG++L + V GN+G P
Sbjct: 91 KKGVEVIGEIELAYRFC-KSKNIVAITGTNGKTTTTTLVGEILKKQHKDVVVCGNIGLPF 149
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
I + + + V+E+SS+Q+E KYF P V +LN+TPDHL RH TM+NY
Sbjct: 150 -------IDTVETSSENTIFVLEISSFQLETI-KYFKPMVGCILNITPDHLNRHMTMENY 201
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA----FPGVKIDTEAKTA- 197
K +F ++ T +L + N + I + N+ F V E K
Sbjct: 202 IKAKMRIFENIDETGYTVLNYDNSVTRDLIGLAKGNVIVFSKNKNQFKNVVFIEENKIYF 261
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+FE V+ + ++ + G HN N A+AA++ L GV + + ++ + H
Sbjct: 262 TFEGKTQEVMRKDEIF---IPGEHNLEN-ALAAIACT-LPFGVTKDTIEYVLKNFKGVEH 316
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R++ V +I G+ + +DSK TN +A + + +++ GG K G+ F L
Sbjct: 317 RIEFV-TEINGIKFYNDSKGTNTDAAEKAISAFES-PIILIAGGYDK---GESFERFAGL 371
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
I + V G + I L G V+N+K+AV + A +GD ++LSP
Sbjct: 372 I--AKKVKKVFLLGQTKQKIASELEKIGYR-NFELVSNLKEAVEKSFEYAKSGDVVLLSP 428
Query: 378 GCASFDEFRNFEHRGMVFQE 397
CAS+D F N+E RG +F+E
Sbjct: 429 ACASWDMFENYEQRGKMFKE 448
>gi|302389514|ref|YP_003825335.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Thermosediminibacter oceani DSM 16646]
gi|302200142|gb|ADL07712.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Thermosediminibacter oceani DSM 16646]
Length = 452
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 111/355 (31%), Positives = 175/355 (49%), Gaps = 21/355 (5%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TGTNGK+T T +G++L + G V GN+G PL + A SK VV
Sbjct: 110 IIAITGTNGKTTTTTLIGEILKNDGKNISVAGNIGTPLIQEADKN----GSK---DYIVV 162
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
EVSS+Q+E + F P +SV+LN+T DHL RHKT +NY K + + +L +
Sbjct: 163 EVSSFQLENIVR-FKPKISVILNITEDHLNRHKTFENYIEAKARILENQDEEDFTVLNYD 221
Query: 165 NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVG-VVSQLQLHNMKVMGRHNY 223
+ + K R + + ++ K + G + L+ + + G HN
Sbjct: 222 DPIVASLEKRARSKIVFFSRKQELQEGVYVKNDVIVIRENGNIYPILKAKELGIKGSHNL 281
Query: 224 HNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEAT 283
NA +AA++V + ++ L T++ HR++ V I GV +++DSK TN +A
Sbjct: 282 ENA-LAAVAVAWI-TKANLNNLAETLKDFHGVEHRLEYVDT-IDGVKFINDSKGTNPDAA 338
Query: 284 CTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL-NHHRCVITFGYSGVLIWKTLV 342
L + G +++ GG K ++ F + + V+ G + I +T
Sbjct: 339 QKALEAVDG-PIILIAGGYDKKVD------FRPFVRSFFGKVKKVVLIGATADQIERTAR 391
Query: 343 NNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
G A+M++AV A+R A GD ++LSP CAS+D F NFE RG VF+E
Sbjct: 392 EEGF-FEVEKAASMREAVEIAKRSAEPGDTVLLSPACASWDMFSNFEERGRVFKE 445
>gi|33240888|ref|NP_875830.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
gi|60390538|sp|Q7VAM1.1|MURD_PROMA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|33238417|gb|AAQ00483.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
Length = 470
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 112/393 (28%), Positives = 190/393 (48%), Gaps = 37/393 (9%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L + G V SE++ A + + ++ + +TGTNGK+TV + +LN+ IE+ +GGN
Sbjct: 93 LNQLRKRGIIVESEINLAWRAL-KNTPWVGITGTNGKTTVTHMLNHVLNNSFIESTIGGN 151
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G +E A KPK+ ++E+SSYQ+E + P + + LTPDHLERH
Sbjct: 152 VGKAATEIALALRKSTKHKPKW--LIMELSSYQIETAPE-ISPEIGIWTTLTPDHLERHG 208
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLA---WIGAFPGVKIDTEA 194
+++NY K L + N+ + + +++L++ +R NL W+ A K ++
Sbjct: 209 SLENYFAIKRTL---IANSSIRIYNADDKYLSK----NRLNLPKGLWVSA---QKYNSNI 258
Query: 195 KTASFEVPAVGVVSQ-----LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
F + + G+V + +++ G HN N + +S IG+ A+ + +
Sbjct: 259 NQLDFWISSNGMVIEQGNELFHSSALQLPGDHNLQN--LLLVSAAARKIGLSGMAIENAL 316
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
HR++ V + I + +DSKATN ++ GL VIL+ G G
Sbjct: 317 ISFAGITHRLEKVDKIID-IDIFNDSKATNFDSAEIGLKATSA--PVILIAG------GL 367
Query: 310 ESNG-FEKLIEPLNHHRC-VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA 367
G + I + C VI G S V + + ++G + AV+ A ++
Sbjct: 368 SKQGIYLDWINQIKEKVCAVILIGESRVKLQHLIKSHGFRGEIVCYEKLDKAVDKAIKLG 427
Query: 368 TN--GDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
+I+ SPGCASFD++ NFE RG F++L
Sbjct: 428 VKFRAKSILFSPGCASFDQYSNFEERGDHFKKL 460
>gi|423686943|ref|ZP_17661751.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
fischeri SR5]
gi|371493702|gb|EHN69302.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
fischeri SR5]
Length = 440
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 110/389 (28%), Positives = 190/389 (48%), Gaps = 55/389 (14%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+ G +++ +++ A + + ++A+TG+NGKSTV G+M G++ VGGN+G
Sbjct: 89 IDKGIQIVGDIELFAWAV--NAPVIAITGSNGKSTVTDLTGEMAKAAGVKTAVGGNIG-- 144
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
AL + ++ V+E+SS+Q+E + + LNL+ DH++R++ M +
Sbjct: 145 -------FAALDLLEQDAELYVLELSSFQLETTSTLKLK-AAAFLNLSEDHMDRYQGMAD 196
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQH----LNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K +F H ++ ++ ++ + + +K F+ G I+ AK A
Sbjct: 197 YRQAKLRIFDH---AEVCIVNRDDKQTYPDVEKTLKSFGFDQGDYGCIEKDGIEYLAKDA 253
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDVEALNSTIEILRTP 255
+S L + + ++G+HN N+ A+A L +G++ L++T++ LRT
Sbjct: 254 ---------MSLLAANELGLVGKHNIANSLVAIALLDAVGIN-------LDATLDTLRTY 297
Query: 256 ---PHRMQIVHRDIQGVTWVDDSKATNLEATCTGL--MDLKGHKCVILLGGQAKVLNGQE 310
HR Q+V D G+ WV+DSKATN+ +T L + L+G K +L+GG K G +
Sbjct: 298 NGLTHRCQVV-ADNNGIRWVNDSKATNVASTLAALSGLQLEG-KLHLLVGGVGK---GAD 352
Query: 311 SNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 370
+ + LN + FG G V+ L M +A+ G
Sbjct: 353 FSELSPALHDLN--LMMYCFGEDG----DQFVS--LDPRSLLCETMDEAIATLYPTLNKG 404
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVFQELA 399
D ++LSP CASFD++ NF RG F +LA
Sbjct: 405 DMVMLSPACASFDQYANFMARGDAFTQLA 433
>gi|422604918|ref|ZP_16676933.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. mori str. 301020]
gi|330888575|gb|EGH21236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. mori str. 301020]
Length = 448
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 113/369 (30%), Positives = 176/369 (47%), Gaps = 55/369 (14%)
Query: 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
+A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+E
Sbjct: 112 IAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP---------ALDLLSDDVELYVME 162
Query: 106 VSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL- 160
+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 163 LSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDALS 221
Query: 161 -------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLH 213
LP LN+ H F G++ + K +F+ + + +
Sbjct: 222 RPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKYLAFQFENL-----MPVR 266
Query: 214 NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
+KV G HN A A LG +G+ +A+ +++ H Q + R+ GV + +
Sbjct: 267 ELKVRGAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHPCQWL-REHDGVHYYN 323
Query: 274 DSKATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVI 328
DSKATN+ A + D+ G K V++ GG K + F L P+ H R +
Sbjct: 324 DSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGAD------FSALRAPVAEHCRAAV 376
Query: 329 TFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 388
G LI + L G ++ V ++ AV + R+A GDA++LSP CAS D F+N+
Sbjct: 377 LLGRDAELIAQAL---GDAVTLVRVDTVQAAVEQSARLAQRGDAVLLSPACASLDMFKNY 433
Query: 389 EHRGMVFQE 397
E RG VF +
Sbjct: 434 EERGRVFAQ 442
>gi|396585078|ref|ZP_10485509.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces sp.
ICM47]
gi|395547168|gb|EJG14658.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces sp.
ICM47]
Length = 481
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 107/378 (28%), Positives = 168/378 (44%), Gaps = 53/378 (14%)
Query: 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
L VTGTNGK+T V +G++L G++A GN+G P++ A +V VE
Sbjct: 115 LTVTGTNGKTTTVGMLGEILRASGVKAEEVGNIGTPITRAI---------DSDAEVFAVE 165
Query: 106 VSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGN 165
+SS+Q+ P S+ LN+ DHL+ H +++ YA K ++ + V + + P +
Sbjct: 166 LSSFQLHTAYTVR-PLASICLNVDADHLDWHGSVEAYAADKARVYENTV--RACVYPAAD 222
Query: 166 QHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHN 225
+ + ++ N + + + A T S G+V L + V RH H
Sbjct: 223 RTVEAMVE----NADVVEGARAIGLTLGAPTVS----QFGIVEGLLVDRAFVDDRHR-HA 273
Query: 226 AAVAALSVLG----------------------LDIGVDVEALNSTIEILRTPPHRMQIVH 263
A+A +S L GV+ EA+ + + R HR +V
Sbjct: 274 IALAHISDLADAYGDHPSPAVLSDALAAAALARAYGVEPEAVEAGLRAFRPAGHRRAVVA 333
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
R +TW+DDSKATN A L L + ++GG K GQ+ +EP
Sbjct: 334 R-AADLTWIDDSKATNAHAARASLAGLPPRSAIWIVGGDPK---GQDFAELISQVEPT-- 387
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKD----AVNHARRMATNGDAIVLSPGC 379
R V+ G ++ K L +P V +D VN A ++ GD +VL+P C
Sbjct: 388 LRGVVVIGADRSVLVKELAACAPDVPFVEVDGHEDWMFSVVNEAVALSRPGDTVVLAPAC 447
Query: 380 ASFDEFRNFEHRGMVFQE 397
AS+D+F N+ RG VF +
Sbjct: 448 ASWDQFDNYGQRGDVFAD 465
>gi|379022992|ref|YP_005299653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
canadensis str. CA410]
gi|376323930|gb|AFB21171.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
canadensis str. CA410]
Length = 455
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 108/383 (28%), Positives = 186/383 (48%), Gaps = 41/383 (10%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
+ S++D + R++ +AV GTNGKST + +LN G++ V GN+G P +A
Sbjct: 90 ITSDIDLLFEK-SRNLNFIAVIGTNGKSTTTALISHILNSNGLDYPVAGNIGVPALKA-- 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+SK + V+E+SS+Q+++ K F ++V+LN+TPDHL+RHK M Y K
Sbjct: 147 -----KNSKDGY---VLELSSFQLDLV-KTFTAKIAVLLNITPDHLDRHKDMNGYIKAKS 197
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEA-IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
+F M ++ N + + +K + + F KI + + +
Sbjct: 198 KIFDRMDKNSYAVINIDNDYCRKIFMKLQQEQRIKLIPFSVTKILEKGISVVNNIINYSF 257
Query: 207 V--SQLQL-HNMKVMGRHNYHN--AAVAALSVLGLDIGVD-VEALNSTIEILRTPPHRMQ 260
S +L N + G HN N A+ A ++GL+ +EA++S ++ PHRMQ
Sbjct: 258 FGNSNFKLPFNKNLQGIHNCENIAASYAVAKIMGLEESTKIIEAISS----FQSLPHRMQ 313
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP 320
+ I +++ +DSKATN + L +K + L G + G ++++
Sbjct: 314 YIGS-INNISFYNDSKATN---AISALQSIKALDNIYWLAGGI-----PKEGGIKEIMPY 364
Query: 321 LNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVAN-MKDAVNHARRMATNGDA----IVL 375
N + +G + + T+ N I FA+ N +K + A + A A I+L
Sbjct: 365 FNRIKKAYFYGQAKEMFADTVKN----IVDFAICNDLKQVFDLAYKDAVGDTAAVKNILL 420
Query: 376 SPGCASFDEFRNFEHRGMVFQEL 398
+P C+S+D+F+NFE RG +F +L
Sbjct: 421 APSCSSYDQFKNFEERGELFIKL 443
>gi|417092864|ref|ZP_11957377.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
suis R61]
gi|353532134|gb|EHC01809.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
suis R61]
Length = 449
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 100/351 (28%), Positives = 172/351 (49%), Gaps = 23/351 (6%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+ +TG+NGK+T T + ++LN A + GN+G P S A A + V+
Sbjct: 114 IVGITGSNGKTTTTTMIAEVLNVGNKPAKLCGNIGYPASSVAQTATAEDT-------LVM 166
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+ + + F P ++VV NL H++ H T ++Y + K + M +L F
Sbjct: 167 ELSSFQL-MGTESFHPHIAVVTNLIASHIDYHGTFEDYVVAKWMIQRQMTAEDFVVLNFN 225
Query: 165 NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYH 224
+ E + + A + F +++ A A ++ G + + V G HN
Sbjct: 226 QKEAKELAEQTK---ATVVPFSTLEVVDGAYLADGKLYFKGEYI-MDADQIGVPGSHNVE 281
Query: 225 NAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATC 284
NA +A + V L +GVD +A+ ++ + HR+Q V +I GV++ +DSK+TN+ AT
Sbjct: 282 NA-LATIVVAKL-MGVDNQAIQESLSVFGGVKHRLQFVG-EINGVSFYNDSKSTNILATQ 338
Query: 285 TGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNN 344
L K +++ GG + N F++L+ L + ++ G S + + +
Sbjct: 339 KALSGFDNSKVILIAGGLDR------GNEFDELVPDLIGLKNMVILGQSAPRVQRAA--D 390
Query: 345 GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
+ + ++ DA A MA GD ++LSP AS+D + NFE RG VF
Sbjct: 391 KAEVETVSALDIADATRKAFEMAEEGDIVLLSPANASWDMYANFEVRGDVF 441
>gi|416052134|ref|ZP_11578050.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|347992404|gb|EGY33807.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
Length = 434
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 112/393 (28%), Positives = 176/393 (44%), Gaps = 43/393 (10%)
Query: 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
+K + LQ+G V+ +++ + + I +A+TG+NGKSTV T V +M G+
Sbjct: 76 VKTPEIQTALQAGVEVVGDIELFCREADKPI--VAITGSNGKSTVTTLVAEMAKAAGLSV 133
Query: 73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
+GGN+G P AL + + V+E+SS+Q+E T + VLN+T DH
Sbjct: 134 GMGGNIGIP---------ALSLLNQQHDLYVLELSSFQLETTYS-LKATAATVLNVTEDH 183
Query: 133 LERHKTMKNYALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV 188
+ R+ +++Y K ++ + ++N + L +Q + + N +
Sbjct: 184 MNRYVDLQDYRQAKLSIYDNCQTAVINAEDPLTLPTSQQPQKQVSFGESNADY------- 236
Query: 189 KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
++ TE V L MK+ GRHNY NA A G+++ + +
Sbjct: 237 RLKTENNKTYLMAHDETV---LACDEMKLSGRHNYMNALAAIALAQA--AGINLTGIRTA 291
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKVLN 307
+ HR Q+ H GV W++DSKATN+ +T L L+ K +LLGG K +
Sbjct: 292 LREFGGLDHRFQVAHI-ADGVRWINDSKATNVGSTVAALTGLQIAGKLHLLLGGDGKGAD 350
Query: 308 GQESNGFEKLIEPLNH-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRM 366
F +L +N H FG G + N L M+ A+ R
Sbjct: 351 ------FSELARLINQPHIYCYCFGRDGEQLAALSSQNQL------FDTMEHAIAAIRPQ 398
Query: 367 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
GD ++LSP CAS D+F FE RG F LA
Sbjct: 399 LQTGDMVLLSPACASLDQFSCFEARGDEFTRLA 431
>gi|322372684|ref|ZP_08047220.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
sp. C150]
gi|321277726|gb|EFX54795.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
sp. C150]
Length = 450
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 112/382 (29%), Positives = 182/382 (47%), Gaps = 33/382 (8%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+A L+ G V +E++ A V I+ +TG+NGK+T T + +LNH G + GN
Sbjct: 89 VARALEKGIPVWTEVELAYLV--SEAPIIGITGSNGKTTTTTMIADVLNHGGKSGVLSGN 146
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P SE A A + V+E+SS+Q+ + F P ++V+ NL P H++ H
Sbjct: 147 IGFPASEVAQSVTAQDT-------LVMELSSFQL-MGIDSFHPHIAVITNLMPTHIDYHG 198
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKT 196
+ + Y K ++ + M + +L F NQ L + + A + F V K+D
Sbjct: 199 SFEAYVAAKWNIQNRMTSDDFIILNF-NQDLAKELATK--TKAQVVPFSTVEKVD----G 251
Query: 197 ASFEVPAVGVVSQL--QLHNMKVMGRHNYHNA-AVAALSVLGLDIGVDVEALNSTIEILR 253
A E + +L + + V G HN NA A A+S L G+ +A+ T+
Sbjct: 252 AYLENGGLYYKGELIMKADEIGVPGSHNVENALATIAVSKLS---GISNQAIKETLASFG 308
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
HR+Q V I V + +DSK+TN+ AT L K +++ GG + N
Sbjct: 309 GVKHRLQFVDT-INDVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNE 361
Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
F++L+ + + +I G S + + G+S ++ DA A A+ GD +
Sbjct: 362 FDELVPDITGVKKMIILGESAPRVKRAAEKAGVS--YLDAKDVADATRIAFDQASAGDVV 419
Query: 374 VLSPGCASFDEFRNFEHRGMVF 395
+LSP AS+D ++NFE RG F
Sbjct: 420 LLSPANASWDMYKNFEVRGDEF 441
>gi|319947490|ref|ZP_08021722.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
australis ATCC 700641]
gi|417919785|ref|ZP_12563309.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
australis ATCC 700641]
gi|319746430|gb|EFV98691.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
australis ATCC 700641]
gi|342831762|gb|EGU66072.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
australis ATCC 700641]
Length = 450
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 104/377 (27%), Positives = 179/377 (47%), Gaps = 31/377 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LEKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQNGLLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P HL+ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGIEAFHPEIAVITNLMPTHLDYHGSFEG 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K + +M +L F NQ L + + + + K+D E
Sbjct: 203 YVAAKWAIQKNMTAKDFVVLNF-NQDLAKDLS-QQTQATVVPFSTQEKVDGAYLEDGVLY 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F AV ++ + V G HN N A+A ++V L G+D + + T+ HR
Sbjct: 261 FRGEAV-----MRADQIGVPGSHNVEN-ALATIAVAKLR-GIDNQTIQETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q V +I+GV + +DSK+TN+ AT L +++ GG + N F++L+
Sbjct: 314 LQYVA-EIEGVKFYNDSKSTNILATQKALSGFDNANVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
+ + ++ G S + + N + ++ DA A +A GD ++LSP
Sbjct: 367 PDITGLKKMVILGESAERVKRAA--NQAGVTYLDATDVADATRKAYELAEPGDIVLLSPA 424
Query: 379 CASFDEFRNFEHRGMVF 395
AS+D + NFE RG F
Sbjct: 425 NASWDMYANFEVRGDEF 441
>gi|406983107|gb|EKE04355.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [uncultured
bacterium]
Length = 453
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 107/359 (29%), Positives = 182/359 (50%), Gaps = 26/359 (7%)
Query: 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQV 101
S+ +A+TGTNGK+T V ++L + G A GN+G P+ I+L KP
Sbjct: 110 SVPFIAITGTNGKTTTTKLVSEILTNAGYNAPACGNIGLPV-------ISL-VEKPDIDY 161
Query: 102 AVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161
V EVSSYQ+E N+ F P +++ LN TPDH++ H + + Y K LF+ + +L
Sbjct: 162 FVAEVSSYQIET-NQVFKPQIALFLNYTPDHIDWHGSEEAYFEAKAGLFTDHRSPIWAIL 220
Query: 162 PFGNQHLNEAIKGHRFNLAWIG-AFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGR 220
+ + E N+ + G PG + + F + +++ ++ ++G+
Sbjct: 221 NACDPKICELRHKSLSNVVYFGREMPGPSVYMK-DNKIFAKSKNKIEKIIEVEDISLIGK 279
Query: 221 HNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
HNY N AA+A SV + V+ + + TI+ + P HR++ V I G+++ +DSKAT
Sbjct: 280 HNYQNIMAAIAIASV----VQVESDTIRETIKNFKAPEHRLEYVTA-IGGISYYNDSKAT 334
Query: 279 NLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIW 338
N ++T L K V++ GG+ K G + N + I+ H V+ G +
Sbjct: 335 NCDSTICALKAFNDDKVVLIAGGRDK---GTDLNELVETIKKQAAH--VVLIGEAADRFQ 389
Query: 339 KTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
+ L + + AV +++A++ A + ++ +P CASFD F+NFE RG VF++
Sbjct: 390 QALQDGNYTNISRAVT-LEEAIDAAGNLKLG--PVLFAPACASFDMFKNFEERGRVFKD 445
>gi|385785812|ref|YP_005816921.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Erwinia sp.
Ejp617]
gi|310765084|gb|ADP10034.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Erwinia sp.
Ejp617]
Length = 438
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 113/366 (30%), Positives = 170/366 (46%), Gaps = 43/366 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + GGN+G P A + P+ Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGWQVGTGGNIGLP----ALTLLQQPA-----QLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + + +LN+T DH++R+ M+ Y K ++ + +
Sbjct: 158 ELSSFQLETTSSLHA-AAATILNVTEDHMDRYPLGMQQYRAAKLRIYENATVCVVN---- 212
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ + ++G GA G + + + V V++ ++H ++G+HN
Sbjct: 213 ADDAMTMPVRGADARCVSFGADVGDYHLTRQQGSTWLRVQGEKVLNTDEMH---LVGQHN 269
Query: 223 YHNAAVAALSV--LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
Y NA A +GL ++AL + PHR Q VH GV W++DSKATN+
Sbjct: 270 YTNALAALALADAVGLPRATSLKALTT----FNGLPHRFQRVHEH-NGVRWINDSKATNV 324
Query: 281 EATCTGLMDLKGHKCV-ILLGGQAKVLNGQESNGFEKLIEPLNHHRCVI-TFGYSGVLIW 338
+T L L + +LLGG K S F L L R I FG G +
Sbjct: 325 GSTEAALNGLHPAGILWLLLGGDGK------SADFSPLTRYLQGDRIRIYCFGRDGAELA 378
Query: 339 KTLVNNGLSIPCFAV--ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
P AV M +AV GD ++LSP CAS D+F+NFE RG +F
Sbjct: 379 ALR-------PEVAVQTETMAEAVQQIAARVQPGDLVLLSPACASLDQFKNFEQRGDLFA 431
Query: 397 ELAFSA 402
+LA A
Sbjct: 432 QLAREA 437
>gi|359687842|ref|ZP_09257843.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
licerasiae serovar Varillal str. MMD0835]
gi|418750348|ref|ZP_13306634.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
licerasiae str. MMD4847]
gi|418758453|ref|ZP_13314635.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
licerasiae serovar Varillal str. VAR 010]
gi|384114355|gb|EIE00618.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
licerasiae serovar Varillal str. VAR 010]
gi|404272951|gb|EJZ40271.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
licerasiae str. MMD4847]
Length = 449
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 117/386 (30%), Positives = 181/386 (46%), Gaps = 50/386 (12%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++ A S K++ VTGT+GKST + +++ GGN+G S+
Sbjct: 90 VVSEVELARAFY--SGKLIGVTGTDGKSTTTSLTAHLVSTDFPGTTAGGNIGLAFSD--- 144
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
C+ KP V+V+E+SSYQ+E VSV+LNL DHLERHK ++NY K
Sbjct: 145 FCL-----KP-VPVSVLELSSYQLEDSGPLEL-NVSVILNLASDHLERHKNLENYFAAKA 197
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAW---IGAFPGVKIDTEAKTASFEVPAV 204
+ H N + L+ ++ E I+G L W I F G + T+A + E
Sbjct: 198 RIVDHS-NPRHTLVT-SSKLFKERIQG----LGWSCKILVF-GREEGTDAVISEEERTIK 250
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
N + G HN N A + L+ IG E + + I + PHR Q V +
Sbjct: 251 TGKEIYDAKNFPLPGGHNLDNLAASILAAEA--IGAKPEHIQNLIGTFKGLPHRFQYVGK 308
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHK-CVILLGGQAKVLNGQESNGFEKLIEPLNH 323
G+++++DSK+TNL + GL K K ++LGG+ KV EPL
Sbjct: 309 -AAGISFINDSKSTNLHSMLAGLNTWKDKKGTFLILGGRPKV-------------EPLEP 354
Query: 324 HRCVITFGYSGVLI-------WKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA---- 372
+ ++ G VL+ W +++ L ++++ + + +G A
Sbjct: 355 LKEFLSSGIGWVLLIGEARETWAPVISPILGTHLILAGDLEEGFSQIKTAVRSGRARVTS 414
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQEL 398
+V SP CASFD ++NFE RG F +L
Sbjct: 415 VVFSPACASFDLYKNFEERGEHFMKL 440
>gi|390453133|ref|ZP_10238661.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paenibacillus
peoriae KCTC 3763]
Length = 473
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 189/410 (46%), Gaps = 64/410 (15%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
++ G V++E++ A + I+ +TG+NGK+T T+VG++L G+ V GN+G P
Sbjct: 93 VELGIEVVTEVEVAYHLC--KAPIIGITGSNGKTTTTTWVGKLLESSGMNPIVAGNIGTP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
L EAA + VVE+SS+Q++ K F P V+ +LN+ HL+ H M++
Sbjct: 151 LCEAAVDA-------KTDEWMVVELSSFQLK-GTKDFKPAVACLLNVAETHLDYHGGMED 202
Query: 142 YALTKCHLFSHMVNT-------------------KLGLLPFG-NQHLNEAIKGHRFNLAW 181
Y +K LF++ +T K LLPF + L E + A
Sbjct: 203 YVASKARLFANQTSTDTAVVNWDDPVCRELVPYIKAKLLPFSMTERLQEGL------FAD 256
Query: 182 IGAFPGVKIDTEAKTASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240
P V D E + ++GVV + + + + GR N NA A + G
Sbjct: 257 PPYIPDVTDDIERSIVYRD--SLGVVHPIIGVAEIGLPGRFNVENALAACAIAIAA--GA 312
Query: 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG 300
+ L + R HR++ V G + ++SKATN +AT L K V++ G
Sbjct: 313 EPAKLAEPLSAFRGVEHRLEYVIEH-AGAAYYNNSKATNSKATMMALSSFK-QPIVLIAG 370
Query: 301 GQAKVLNGQESNGFEKLIEPLNHH-RCVITFG----------YSGVLIWKTLVNNGLSIP 349
G + + + +L+ L H + V+ G + + +V+NG
Sbjct: 371 GLDR------GSDYTELVPSLQEHVKAVVLLGETRHKLADRAHQAGIEHVEVVDNGED-- 422
Query: 350 CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
A A + +AVN A A GD ++LSP CAS+D FR++E RG +F+E A
Sbjct: 423 --AAATLVEAVNKAAEFAEPGDVVLLSPACASWDMFRSYEERGRIFKEAA 470
>gi|449875963|ref|ZP_21782523.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans S1B]
gi|449253351|gb|EMC51309.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans S1B]
Length = 451
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 111/380 (29%), Positives = 188/380 (49%), Gaps = 37/380 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTEKDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ + S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQVIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q + +I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR---RMATNGDAIVL 375
+ + +I G S + V G++ N KD R + A+ GD ++L
Sbjct: 367 PDIKGLKKMIILGESAPRLKHAAVQAGVT-----YLNAKDVAQATRIAFQEASPGDVVLL 421
Query: 376 SPGCASFDEFRNFEHRGMVF 395
SP AS+D ++NFE RG F
Sbjct: 422 SPANASWDMYKNFEVRGDEF 441
>gi|449916121|ref|ZP_21796673.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 15JP3]
gi|449155612|gb|EMB59117.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 15JP3]
Length = 451
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 188/377 (49%), Gaps = 31/377 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTEKDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV E + T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNETIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q + +I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
+ + +I G S + V G++ ++ A A + A+ GD ++LSP
Sbjct: 367 PDIKGLKKMIILGESAPRLKHAAVQAGVT--YLDAKDVAQATRIAFQEASPGDVVLLSPA 424
Query: 379 CASFDEFRNFEHRGMVF 395
AS+D ++NFE RG F
Sbjct: 425 NASWDMYKNFEVRGDEF 441
>gi|308185657|ref|YP_003929788.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pantoea vagans
C9-1]
gi|308056167|gb|ADO08339.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pantoea vagans
C9-1]
Length = 438
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 115/363 (31%), Positives = 169/363 (46%), Gaps = 43/363 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + VGGN+G P A + P+ Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGLP----ALSLLQSPA-----QLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + + VLN+T DH++R+ M+ Y K ++ N ++ ++
Sbjct: 158 ELSSFQLETTHS-LKAAAATVLNVTEDHMDRYPLGMQQYRAAKLRVYE---NAQICIVN- 212
Query: 164 GNQHLNEAIKGHRFNLAWIGA-FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ L ++G G F ++ + + V V L MK+ G+HN
Sbjct: 213 ADDALTMPVRGADKRCVSFGVDFGDYHLNKQQGSIWLRVKGEKV---LNTAEMKMAGQHN 269
Query: 223 YHNAAVAALSV--LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
Y NA A +GL + AL HR Q+VH QGV W++DSKATN+
Sbjct: 270 YTNALAALALADAVGLPRASSLAALTQ----FNGLAHRFQLVHEH-QGVRWINDSKATNV 324
Query: 281 EATCTGLMDLKGHKCV-ILLGGQAKVLNGQESNGFEKLIEPLNHHRC-VITFGYSGVLIW 338
+T L L+ + +L+GG K S F LI L + FG G +
Sbjct: 325 GSTEAALNGLQVQGTLWLLMGGDGK------SADFTPLIPWLQGDNVRLYCFGRDGDALA 378
Query: 339 KTLVNNGLSIPCFAV--ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
P AV M+ A+ GD ++LSP CAS D+FRNFE RG F
Sbjct: 379 ALR-------PDIAVRTETMRQAMEQIAPQVKAGDMVLLSPACASLDQFRNFEQRGEQFA 431
Query: 397 ELA 399
+LA
Sbjct: 432 QLA 434
>gi|146295957|ref|YP_001179728.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Caldicellulosiruptor saccharolyticus DSM 8903]
gi|166224756|sp|A4XI02.1|MURD_CALS8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|145409533|gb|ABP66537.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Caldicellulosiruptor saccharolyticus DSM 8903]
Length = 453
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 122/388 (31%), Positives = 181/388 (46%), Gaps = 43/388 (11%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V+ E++ A + RS I+A+TGTNGK+T T VG++L + V GN+G P
Sbjct: 91 KRGIEVIGEIELAYRFC-RSKNIVAITGTNGKTTTTTLVGEILKKVFDNVIVCGNIGFPF 149
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
I S + V+E+SS+Q+E KYF P V +LN+TPDHL RH M NY
Sbjct: 150 -------IDYVESSTDDTIFVIEISSFQLETI-KYFKPMVGCILNITPDHLNRHMNMDNY 201
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K +F ++ +L N + IG G I T +K S
Sbjct: 202 IRAKMRIFENIDQEGYSVLNMDNSITRD----------LIGCAKGTVI-TFSKNESDTQN 250
Query: 203 AVGVVSQLQLHNM-----KVM--------GRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
+V V N KVM G HN N A VL +I + + T+
Sbjct: 251 SVFVDGDFIYRNFLGKVEKVMRKDDIFMPGEHNLENTLAAIGCVLPFEIQPSI--IEKTL 308
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
+ + HR++ V R+I GV + +DSK TN +A+ L + +++ GG K G+
Sbjct: 309 KEFKGVEHRIEFV-REINGVRFYNDSKGTNTDASSKALNSFE-VPIILIAGGYDK---GE 363
Query: 310 ESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN 369
F KLI + V G + I L G F V ++K+AV + +A
Sbjct: 364 SFEKFAKLIS--QKVKKVFLLGQTKQKIADQLQKIGYLNFEF-VEDLKEAVKKSFEIAKE 420
Query: 370 GDAIVLSPGCASFDEFRNFEHRGMVFQE 397
GD ++LSP CAS+D F ++E RG +F++
Sbjct: 421 GDVVLLSPACASWDMFESYEQRGRLFKQ 448
>gi|157826844|ref|YP_001495908.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
bellii OSU 85-389]
gi|157802148|gb|ABV78871.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
bellii OSU 85-389]
Length = 450
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 182/375 (48%), Gaps = 51/375 (13%)
Query: 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ 100
+ + +LAVTGTNGKST + +L+ G++ + GN+G P+ +A +SK +
Sbjct: 102 KGLNLLAVTGTNGKSTTTALISHILSDNGLDYPIAGNIGVPVLQA-------KASKGGY- 153
Query: 101 VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160
V+E+SS+Q+++ K F ++V+LN+TPDHL+RH+ M+ Y K +F M G+
Sbjct: 154 --VLELSSFQLDLV-KTFAAKIAVLLNITPDHLDRHENMEGYITAKSKIFDRMDKDSYGI 210
Query: 161 LPFGNQHLNEA---------IKGHRFNLAWIGAFPGVKIDTEAKTAS-FEVPAVGVVSQL 210
+ N + +E IK F++ I G+ I + T + FE + ++S
Sbjct: 211 INIDNDYCHEIFTNLQQKHHIKLIPFSVTKILE-KGISIVNDIITDNFFEHISFKLIS-- 267
Query: 211 QLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQG 268
N + G HN N A+ A ++GL+ +E+++S + PHRMQ + +I
Sbjct: 268 ---NKSLQGIHNSENIAASYAVARIIGLEPVKIIESISS----FQGLPHRMQYL-GNIDD 319
Query: 269 VTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVI 328
+ + +DSKATN A + L L GG AK E IE + + I
Sbjct: 320 INFYNDSKATNAIAAVQSIKALDN--IYWLAGGIAK----------EGGIEEIKPYFSKI 367
Query: 329 TFGYSGVLIWKTLVNNGLSIPCFAVA-NMKDAVNHARRMATNGDA----IVLSPGCASFD 383
Y + N I F + ++K A A + A + I+L+P C+S+D
Sbjct: 368 KKAYFYGQAKEMFANTAKDIIDFVICDDLKQAFELAYKDACKDNEKEKNILLAPCCSSYD 427
Query: 384 EFRNFEHRGMVFQEL 398
+F+NFE RG +F L
Sbjct: 428 QFKNFEERGELFIRL 442
>gi|333029403|ref|ZP_08457464.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
coprosuis DSM 18011]
gi|332740000|gb|EGJ70482.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
coprosuis DSM 18011]
Length = 441
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 108/376 (28%), Positives = 189/376 (50%), Gaps = 35/376 (9%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++FA + + K++ +TG+NGK+T + + M + G + GN+G L+
Sbjct: 90 VISEIEFAGRY--SNAKMICITGSNGKTTTTSLLYHMFHKAGKNVGLAGNIGKSLARQV- 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHKT-MKNYALT 145
++ + ++E+SS+Q++ N Y F ++++LN+TPDHL+R+ M Y
Sbjct: 147 -------AEENHEFYIIELSSFQLD--NMYNFKADIAILLNITPDHLDRYDNCMDKYIDA 197
Query: 146 KCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVG 205
K + + + + + L E I HR A F D K + + G
Sbjct: 198 KFRIIQNQTDKDHFIYWSDDPILKEQI-NHRTIHATKNPFSVEHSDFTYKLGNKIILDGG 256
Query: 206 VVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
+S + +K+ G HN +N AA+ A + L + LNS HR++ V
Sbjct: 257 NLS-IDKEFVKLSGVHNLYNTMAAITAAYLSKLSPMEIEQGLNS----FNGVEHRLEYVD 311
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
I GV +++DSKATN+++ C + + +++LGG+ K N + K I PL
Sbjct: 312 T-IHGVRFINDSKATNVDS-CWYALQAMHNSTILILGGKDK------GNDYNK-ITPLIK 362
Query: 324 HRC--VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+C ++ G + + + +G +IP NM DAV A+ +A +GD ++LSP CAS
Sbjct: 363 EKCTGLVFLGANNTKLHQFF--DGFNIPIEDTNNMTDAVVKAKGLAKSGDTVLLSPCCAS 420
Query: 382 FDEFRNFEHRGMVFQE 397
FD F ++E+RG +F++
Sbjct: 421 FDLFTSYENRGELFKQ 436
>gi|300722057|ref|YP_003711337.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Xenorhabdus
nematophila ATCC 19061]
gi|297628554|emb|CBJ89126.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Xenorhabdus
nematophila ATCC 19061]
Length = 441
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 117/372 (31%), Positives = 172/372 (46%), Gaps = 63/372 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + VGGN+G P AL K Q+ V+
Sbjct: 112 IVAITGSNGKSTVTTLVGEMAKEAGWQVGVGGNIGVP---------ALELLKKSCQLYVL 162
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E + VLN+T DH+ R+ + + Y K ++ +VN +
Sbjct: 163 ELSSFQLET-TYSLKAAAATVLNVTEDHMVRYPEGLPQYRAAKLRIYDQAKACIVNAQDQ 221
Query: 160 L-LPFGNQ---HLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ---LQL 212
L LP G + +++ + + L D+E + VV+Q L
Sbjct: 222 LTLPAGGEESCYISFGVDSGDYQL-----------DSEHQQL--------VVNQCPVLAT 262
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH-RDIQGVTW 271
+M++ G+HNY N A +G+ EA + HR Q+VH RD G+ W
Sbjct: 263 RDMQLAGQHNYTNGLAALALA--DAVGIPREASLQALRTYSGLDHRFQVVHMRD--GIRW 318
Query: 272 VDDSKATNLEATCTGLMDLKGHKCVILL-GGQAKVLNGQESNGFEKLIEPLNHHRC-VIT 329
++DSKATN+ +T L LK + LL GG K S F L ++ + +
Sbjct: 319 INDSKATNVGSTQAALSGLKVEGTLYLLVGGDGK------SADFTPLKPDISGNNIRLYC 372
Query: 330 FGYSGVLIWKTLVNNGLSIPCFAV--ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
FG G + + P AV M+ A+ GD ++LSP CASFD+F
Sbjct: 373 FGRDGDQLAQLR-------PEIAVLTETMEQAMREIASKLVAGDMVLLSPACASFDQFNG 425
Query: 388 FEHRGMVFQELA 399
FEHRG F LA
Sbjct: 426 FEHRGHEFARLA 437
>gi|225389931|ref|ZP_03759655.1| hypothetical protein CLOSTASPAR_03681 [Clostridium asparagiforme
DSM 15981]
gi|225044011|gb|EEG54257.1| hypothetical protein CLOSTASPAR_03681 [Clostridium asparagiforme
DSM 15981]
Length = 452
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 120/380 (31%), Positives = 187/380 (49%), Gaps = 37/380 (9%)
Query: 28 VMSELDFAAQVIPRSI-KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
++ EL+ A Q S+ ++LA+TGTNGK+T G++L + +V GN+G P + A
Sbjct: 95 IIGELELAYQ---SSLGRLLAITGTNGKTTTTALTGEILKAQFEDVYVVGNIGEPYT-AK 150
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ S V V EVSS+Q+E F P VS +LN+TPDHL RHKTM+NY K
Sbjct: 151 VETMTAES------VTVAEVSSFQLETILD-FRPEVSAILNITPDHLNRHKTMENYIQIK 203
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFN--LAWIGAFPGVKI------DTEAKTAS 198
+ + +L + + L E + + W + +K DT S
Sbjct: 204 EAITLNQTEEDAVVLNYDDPVLREFGESGELKPRVIWFSSREKLKDGFCMNGDTIVYCKS 263
Query: 199 -FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
E P + V H+M ++GRHNY N V A + + + +GV +E + I R H
Sbjct: 264 GRETPVINV------HSMHLLGRHNYEN--VMAAAAMSMQMGVPLEKITQVIRDFRPVEH 315
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R++ V R+ GV + +DSK TN +A L + G +++ GG K S + +
Sbjct: 316 RIEFV-RERTGVKYYNDSKGTNPDAAIQALRAMPG-PTILIAGGYDK-----NSEYDDWV 368
Query: 318 IEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
E R +I G + I +G + +A ++ +AV + A GD ++LSP
Sbjct: 369 AEFEGKVRYLILIGQTRDKIAACAKKHGFTEIMYA-EDLPEAVQVSAVYADTGDYVLLSP 427
Query: 378 GCASFDEFRNFEHRGMVFQE 397
CAS+D F++FE RG +F+E
Sbjct: 428 ACASWDMFKSFEERGEIFKE 447
>gi|295105488|emb|CBL03032.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium
prausnitzii SL3/3]
Length = 467
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 116/391 (29%), Positives = 185/391 (47%), Gaps = 42/391 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+ +G V SE++ P +I+AVTG++GK+T T + + G + +GGN+G
Sbjct: 100 MAAGTMVTSEVELFFDFCP--CEIVAVTGSDGKTTTTTLISKFYEAAGRKVHLGGNIGAA 157
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
L LP P+ VAVVE+SS+Q+ + + P ++VV N+TP+HL+ HK M+
Sbjct: 158 L------LPMLPEVSPE-DVAVVELSSFQL--ISMHASPNIAVVTNVTPNHLDHHKDMQE 208
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQ---HLNEAIKGH-----RFNLAWIGAFPGVKIDTE 193
Y K ++ + +L + N+ + KG R + GAF
Sbjct: 209 YIDAKRNILLYQKQPCRAVLGYENEISRSMQADCKGKQVWFTRLHDTDNGAF------LR 262
Query: 194 AKTASFEVPAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
+ + GVV+ L ++K+ G HN N AA +V G V VEA+
Sbjct: 263 KEDGMLCMAEDGVVTPFLAQKDVKLRGLHNIENLLAAAAAVWG---EVPVEAIRQVGSTF 319
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
HR++ V R + GV + +DS T+ T GL K +++ GG K +
Sbjct: 320 TGVEHRIEPV-RTLDGVLYYNDSIGTSPTRTIAGLRSFD-RKVILIAGGYDKHIP----- 372
Query: 313 GFEKLI-EPLNHHRCVITFGYSGVLIWKTLVN----NGLSIPCFAVANMKDAVNHARRMA 367
+E L E + H + ++ G +G I + + + ++P NM+ AV AR A
Sbjct: 373 -YEPLAPEIIAHVKNLVLMGATGPRIEQAVRECSGFDEAALPIQHADNMQHAVELARAAA 431
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
GD I+LSP ASFD + NFE RG F+++
Sbjct: 432 KPGDIIILSPASASFDLYPNFEVRGREFKKI 462
>gi|153835403|ref|ZP_01988070.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio harveyi
HY01]
gi|148868059|gb|EDL67234.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio harveyi
HY01]
Length = 437
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 116/401 (28%), Positives = 179/401 (44%), Gaps = 71/401 (17%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ +L G V+ +++ A + + + +A+TG+NGKSTV G M G+ VGGN
Sbjct: 85 IQAVLAKGTPVVGDIELFAWAVDKPV--IAITGSNGKSTVTDLTGVMAKAAGLTVGVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P AL + + V+E+SS+Q+E + + LNL+ DH++R++
Sbjct: 143 IGVP---------ALDLLEQGADLYVLELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYE 192
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
M +Y K +F N +L ++ +Q FP DTE
Sbjct: 193 GMSDYRQAKLRIFD---NAELAVVNRDDQE----------------TFP----DTETPLV 229
Query: 198 SF--EVPAVGVVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242
+F + A G+ + + +K++G+HN N AL VL L DV
Sbjct: 230 TFGSDEQAYGLEADGNRTWLLDHGQRVIASDELKLVGKHNLAN----ALVVLALLKAADV 285
Query: 243 EALNSTIEILRTP---PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVIL 298
+ + ++ L+T HR Q+V D +GV WV+DSKATN+ +T L L+ K +L
Sbjct: 286 D-YHKSLNALKTYTGLTHRCQVV-ADNRGVKWVNDSKATNIASTMAALSGLESTGKLYLL 343
Query: 299 LGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKD 358
+GG K G + + + LN C FG G L M+D
Sbjct: 344 VGGVGK---GADFTPLKPIFATLNLQLCC--FGADGDEFMP------LHESATRFDTMED 392
Query: 359 AVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
+ GD ++LSP CASFD+F NF RG F LA
Sbjct: 393 VIQQISSQLKTGDMVMLSPACASFDQFDNFMARGDAFAALA 433
>gi|394993857|ref|ZP_10386597.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
916]
gi|393805428|gb|EJD66807.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
916]
Length = 451
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 111/377 (29%), Positives = 182/377 (48%), Gaps = 32/377 (8%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V +E++ A + + K + +TG+NGK+T T + +ML I+A V GN+G
Sbjct: 95 RRGIPVWTEIELAYYIT--NAKFIGITGSNGKTTTTTLIYEMLKADSIKALVAGNIGTVA 152
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
SE A+H + V E+SS+Q+ + F P + ++LN+ HL+ H + +NY
Sbjct: 153 SEVAYHA-------DGDEWIVTELSSFQL-MGTHAFRPEIGLILNVFDAHLDYHHSRENY 204
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K +++ H + + ++ NQ ++ A G P + E + +F
Sbjct: 205 EKAKQNVYLHQLESDTAIV---NQSDETVVRLAESGKA--GTVP-FSVHQELSSGAFIKD 258
Query: 203 AV---GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ G + L + ++ + G HN N + A G +A+ + HR+
Sbjct: 259 GMLMFGDEAILPVDDIVLPGAHNLEN--ILAAVAAAKTAGASNKAIQKVLTSFTGVKHRL 316
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319
Q V IQ + +DSKATN+ AT L K VILL G NGF+ L
Sbjct: 317 QYV-TAIQNRRFYNDSKATNILATSKALSAFKA--PVILLAGGL-----DRGNGFDDLKP 368
Query: 320 PLNHHRCVITFGYSGVLIWKTLVNNGLSIP-CFAVANMKDAVNHARRMATNGDAIVLSPG 378
+++ + V+TFG + I K + N L I V N++ AV+ A ++ GD I+LSP
Sbjct: 369 YMDNVKAVLTFGQTAPKIEK--LGNELGIQHVKRVDNVEQAVSAAFALSNEGDVILLSPA 426
Query: 379 CASFDEFRNFEHRGMVF 395
CAS+D+F+ FE RG +F
Sbjct: 427 CASWDQFKTFEERGDMF 443
>gi|386288564|ref|ZP_10065704.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [gamma
proteobacterium BDW918]
gi|385278119|gb|EIF42091.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [gamma
proteobacterium BDW918]
Length = 450
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 118/361 (32%), Positives = 177/361 (49%), Gaps = 39/361 (10%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T V +M + G VGGNLG P AL + ++ V+
Sbjct: 111 IVAITGSNGKSTVTTLVAEMAVNAGWRCAVGGNLGTP---------ALELLDDRAELYVL 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E + V+ VLN++ DHL+ H +M Y K +F ++N L
Sbjct: 162 ELSSFQLE-RCAFIGAEVATVLNVSEDHLDHHGSMIAYHQAKHRIFRDCKKVVINRDDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ +A++ F L AF + D E + A+ + L + +K+
Sbjct: 221 ---STPLVPDAVEKWNFGLGRSDFRAFGLMDEDGE------QYLALAREALLPVSALKIA 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G+ + A+ ST+ + HR Q V + QG+ + +DSK T
Sbjct: 272 GSHNISNAMAALALG--AAAGLPMSAMLSTLTEFKGLSHRCQFVAQ-WQGLRFYNDSKGT 328
Query: 279 NLEATCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEP-LNHHRCVITFGYSGVL 336
N+ A + L L G K V++ GG K + F+ LI+ L+ R V+ G +G
Sbjct: 329 NVGAAVSALRGLSGAGKLVLIAGGVGKGAD------FKPLIDTLLSVGRAVVFIGEAGPA 382
Query: 337 IWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
+ L +P ++M AV A A +GD ++LSP CASFD FRN+EHRG VF
Sbjct: 383 MNALLDGR---LPSQICSDMPAAVRAAAAYAESGDVVLLSPACASFDMFRNYEHRGAVFA 439
Query: 397 E 397
E
Sbjct: 440 E 440
>gi|332187168|ref|ZP_08388908.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
S17]
gi|332012868|gb|EGI54933.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
S17]
Length = 429
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 108/358 (30%), Positives = 167/358 (46%), Gaps = 50/358 (13%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP-LSEAAFHCIALPSSKPKFQVA 102
K++ +TGTNGKST V +L G+ +GGN+G P L +A P+ V
Sbjct: 110 KVVGITGTNGKSTTTALVHHILKTAGVPTLMGGNIGLPILGQAPL---------PEGGVY 160
Query: 103 VVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162
V+E+SSYQ+++ C V+V+LN+TPDHL+R+ YA +K LF+ + ++
Sbjct: 161 VLELSSYQIDLTQSLDC-DVAVLLNITPDHLDRYDGFAGYAASKARLFAMQTAGHVAVVG 219
Query: 163 FGNQ---HLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMG 219
G++ ++ + + G +L I P ID A LH
Sbjct: 220 TGDEASANIAQGLAGRTDDLVTIA--PDTVIDQRRWPA--------------LHGPHNAQ 263
Query: 220 RHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATN 279
A AL G+D A+ + + + PHRMQ V GV +V+DSKATN
Sbjct: 264 NAQAAIAVTRAL-------GIDEAAIEAGLASYASLPHRMQHVATR-NGVAFVNDSKATN 315
Query: 280 LEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWK 339
E+T L + ++GG+ K + + L+H T G + L +
Sbjct: 316 PESTAPALAAFP--RVHWIVGGKRK------GDDLDACAAHLDHVVAAYTIGEAAPLFFD 367
Query: 340 TLVNNGLSIPCFAVA-NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
L + +P + ++ AV HA A GD ++LSP CASFD+FR++E RG F+
Sbjct: 368 LLKDK---VPVVEQSGTLEAAVVHAAAAARPGDTVLLSPACASFDQFRDYEARGDAFR 422
>gi|422863105|ref|ZP_16909737.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis SK408]
gi|327473405|gb|EGF18825.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis SK408]
Length = 459
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 107/379 (28%), Positives = 183/379 (48%), Gaps = 37/379 (9%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A + I+ +TG+NGK+T T + Q+L G + GN+G P S+ A
Sbjct: 108 VITEVELAYLI--SEAPIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSGNIGFPASQVAQ 165
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
SSK + V+E+SS+Q+ + + F P ++V+ NL P HL+ H +++ YA K
Sbjct: 166 TA----SSK---DMLVMELSSFQL-MGIEDFHPQIAVITNLMPTHLDYHGSVEEYAAAKW 217
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTASFEVPA 203
++ +M +L F E + A + F K+D E +F A
Sbjct: 218 NIQKNMTADDYLVLNFNQDWAKEMASQTQ---ATVVPFSTTEKVDGAYLEGDVLTFRGEA 274
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
+ +Q+ + V G HN N A+A ++V L G+D + + + HR+Q V
Sbjct: 275 I-----MQVAEIGVPGSHNVEN-ALATIAVAKLR-GIDNQTIKEVLSAFGGVKHRLQYVG 327
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
+ + V + +DSK+TN+ AT L K +++ GG + N F++L+ L
Sbjct: 328 Q-VNEVAFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELVPDLKG 380
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 383
+ ++ G S + + G+S +++DA + A A GD ++LSP AS+D
Sbjct: 381 LKKMVILGQSAARVKRAADQAGVS--YLDATDVRDAAHKAFAQAEPGDIVLLSPANASWD 438
Query: 384 EFRNFEHRG----MVFQEL 398
+ NFE RG F+EL
Sbjct: 439 MYSNFEVRGDEFLAAFEEL 457
>gi|329901110|ref|ZP_08272726.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacteraceae
bacterium IMCC9480]
gi|327549209|gb|EGF33797.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacteraceae
bacterium IMCC9480]
Length = 501
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 122/392 (31%), Positives = 178/392 (45%), Gaps = 54/392 (13%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K++A+TGTNGK+TV + G + G+ V GN+ + C+ S Q V
Sbjct: 124 KLIAITGTNGKTTVTSLTGLLCERAGLSVQVAGNISPSALDVLRQCL---DSDSLPQAWV 180
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS------------ 151
+E+SS+Q+ + V+ VLN+T DHL+ H M Y K +F
Sbjct: 181 LELSSFQLHTTHS-LQADVATVLNITQDHLDWHGDMACYVADKARIFGTDTIRVLNRDDA 239
Query: 152 ---HMVNTKLGLLPFGNQHLNEAIKGHRFNL------AWIGAFPGVKIDTEA-----KTA 197
+ +T + FG+ +EA+ F L W+ V I+ EA K
Sbjct: 240 AVMQLASTGTAPVTFGS---DEALSPDCFGLLNENGMQWLA----VAIEAEAEKKPTKRG 292
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
EV AV + +K+ G+HN NA A IG+ + L + PH
Sbjct: 293 PAEVRAVSSKRLMPADALKIRGQHNALNALAALALCRA--IGLPLAPLLHGLRDYHGEPH 350
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL---KGHKCVILLGGQAKVLNGQESNGF 314
R+++V + GVT+ DDSK TN+ AT L L + K V++ GG K GQ+ F
Sbjct: 351 RVELVTT-LAGVTYFDDSKGTNVGATVAALTGLGLQQQGKLVLIAGGDGK---GQD---F 403
Query: 315 EKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
L P+ H R V+ G I L + + A+++ AV A +A GDA+
Sbjct: 404 TPLAAPVARHVRAVLLIGKDADAIRAALAGHIGQVELLDCASLEQAVERAAALAQAGDAV 463
Query: 374 VLSPGCASFDEFRNFEHRGMVF----QELAFS 401
+LSP CAS D FRN+ HR VF +ELA S
Sbjct: 464 LLSPACASLDMFRNYAHRADVFVDAVRELALS 495
>gi|422824083|ref|ZP_16872271.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis SK405]
gi|422825842|ref|ZP_16874021.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis SK678]
gi|422853754|ref|ZP_16900418.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis SK160]
gi|422856023|ref|ZP_16902681.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis SK1]
gi|422860647|ref|ZP_16907291.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis SK330]
gi|422865992|ref|ZP_16912617.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis SK1058]
gi|324993410|gb|EGC25330.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis SK405]
gi|324995278|gb|EGC27190.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis SK678]
gi|325697065|gb|EGD38952.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis SK160]
gi|327461684|gb|EGF08015.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis SK1]
gi|327469030|gb|EGF14502.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis SK330]
gi|327489537|gb|EGF21330.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis SK1058]
Length = 459
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 109/379 (28%), Positives = 184/379 (48%), Gaps = 37/379 (9%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A + I+ +TG+NGK+T T + Q+L G + GN+G P S+ A
Sbjct: 108 VITEVELAYLI--SEAPIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSGNIGFPASQVAQ 165
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
SSK V+E+SS+Q+ + + F P ++V+ NL P HL+ H +++ YA K
Sbjct: 166 TA----SSKDTL---VMELSSFQL-MGIEDFHPQIAVITNLMPTHLDYHGSVEEYAAAKW 217
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTASFEVPA 203
++ +M +L F NQ + + H A + F K+D E +F A
Sbjct: 218 NIQKNMTADDYLVLNF-NQDWAKEMASH--TQATVVPFSTTEKVDGAYLEGDVLTFRGEA 274
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
+ +Q + V G HN N A+A ++V L G+D + + + HR+Q V
Sbjct: 275 I-----MQAAEIGVPGSHNVEN-ALATIAVAKLR-GIDNQTIKEVLSAFGGVKHRLQYVG 327
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
+ + V + +DSK+TN+ AT L K +++ GG + N F++L+ L
Sbjct: 328 Q-VNEVAFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELVPDLKG 380
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 383
+ ++ G S + + G+S +++DA + A A GD ++LSP AS+D
Sbjct: 381 LKKMVILGQSAARVKRAADLAGVS--YLDATDVRDAAHKAFAQAEPGDIVLLSPANASWD 438
Query: 384 EFRNFEHRG----MVFQEL 398
+ NFE RG F+EL
Sbjct: 439 MYSNFEVRGDEFLAAFEEL 457
>gi|229524389|ref|ZP_04413794.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
bv. albensis VL426]
gi|229337970|gb|EEO02987.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
bv. albensis VL426]
Length = 467
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 112/371 (30%), Positives = 171/371 (46%), Gaps = 60/371 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G + N G++A VGGN+G P AL P ++ V+
Sbjct: 137 VIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVL 187
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLG 159
E+SS+Q+E + + LNL+ DH++R++ M++Y K +F H +VN
Sbjct: 188 ELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQ 246
Query: 160 LLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM 215
P HL G +F+LA + EA A E +
Sbjct: 247 TFPDHAAHLQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------L 292
Query: 216 KVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
++GRHN N +A L ++ + ++AL S + HR Q+V D G+ WV+
Sbjct: 293 SLVGRHNVANVLTVLALLDSAEVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVN 347
Query: 274 DSKATNLEATCTGLMDLKGH-KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGY 332
DSKATN+ +T L LK + +L+GG K G + ++ L C FG
Sbjct: 348 DSKATNVASTLAALSGLKIEGQLYLLVGGVGK---GADFTPLAPVLATLPVQLCC--FGV 402
Query: 333 SGVLIWKTLVNNGLSIPCFAVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNF 388
G +P A D+ + R +GD ++LSP CASFD+F+NF
Sbjct: 403 DGHQF----------MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNF 452
Query: 389 EHRGMVFQELA 399
RG +F +LA
Sbjct: 453 MARGDIFAQLA 463
>gi|238855274|ref|ZP_04645593.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
jensenii 269-3]
gi|260664633|ref|ZP_05865485.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
jensenii SJ-7A-US]
gi|313471909|ref|ZP_07812401.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
jensenii 1153]
gi|238832166|gb|EEQ24484.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
jensenii 269-3]
gi|239529167|gb|EEQ68168.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
jensenii 1153]
gi|260561698|gb|EEX27670.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
jensenii SJ-7A-US]
Length = 456
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 108/363 (29%), Positives = 176/363 (48%), Gaps = 43/363 (11%)
Query: 48 VTGTNGKSTVVTFVGQMLNH----LGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
VTG+NGK+T V ++++H G A+ GN+G P+SE K V V
Sbjct: 118 VTGSNGKTTTVMLTSEIIDHHLAKSGHHAYAVGNIGVPISEVV-------QKATKDDVLV 170
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
VE+SS+Q+ + P V+ ++++ P HL+ HKTM+NY K ++ + + + F
Sbjct: 171 VEISSFQL-LGVTDIKPKVAAIVDIYPTHLDYHKTMENYIAAKLNVTRFQTSDEYFIANF 229
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDT---EAKTASFEVPAVGVVSQ----LQLHNMK 216
+ + LA A KI T +AS+ V + SQ +++ ++K
Sbjct: 230 DQKEI----------LAQEQATTKAKIQTFSMNDHSASYFVGDEYLESQSEKIMKIADIK 279
Query: 217 VMGRHNYHNAAVA-ALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDS 275
+ G+HN N+ VA A+S L D++A+ ST R HR+Q V + V +DS
Sbjct: 280 LPGKHNLQNSMVAIAISKLMGAENSDIQAVLSTFAGAR---HRLQYV-TTLNNVKIYNDS 335
Query: 276 KATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSG 334
K+TN+EA + + +L+GG F+ L+ L H + V+ +G +
Sbjct: 336 KSTNIEAATVAIKAFS--EPEVLIGGGL-----DRGFTFDPLVPLLKEHVKAVVLYGETR 388
Query: 335 VLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMV 394
L+ G+ V +K+AV A ++ GD ++LSP CAS+D+F+ FE RG
Sbjct: 389 YLLADAARKAGIK-EIKIVNTLKEAVPTAYKLTQPGDVLLLSPACASWDQFKTFEQRGDY 447
Query: 395 FQE 397
F E
Sbjct: 448 FME 450
>gi|167622393|ref|YP_001672687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
halifaxensis HAW-EB4]
gi|167352415|gb|ABZ75028.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
halifaxensis HAW-EB4]
Length = 439
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 109/380 (28%), Positives = 183/380 (48%), Gaps = 43/380 (11%)
Query: 25 GKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
G V+ +++ FA +V S K++ +TG+NGK+TV T VG+M G VGGN+G P
Sbjct: 90 GIEVIGDVELFAREVSQGSAKVIGITGSNGKTTVTTLVGEMAKACGCSYAVGGNIGVPAL 149
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
+ +PK ++ ++E+SS+Q+E + C T + LN++ DH++R+ +++Y
Sbjct: 150 DLLL--------EPK-ELYILELSSFQLETTHSLQC-TAATCLNISEDHMDRYSDLESYR 199
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203
K L+ +K+ L N+ + + N G ++D + V
Sbjct: 200 QAKLKLYKQ---SKMVLF---NREDALTVPNNPTNQESFG-LDAPEMDAWGISGGMIVH- 251
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQ 260
G + + ++ ++G HN+ N A I D + IE+ +T HR +
Sbjct: 252 -GSSQIMAVSDVALVGSHNHANIIAAMALATAAGIERDFQ-----IEVAKTFSGLAHRCE 305
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKVLNGQESNGFEKLI 318
+V +I GVT+V+DSKATN+ AT + L H + +++ GG K G + E ++
Sbjct: 306 VV-AEIAGVTYVNDSKATNIGATVAAIDGLSEHLGELILIAGGDGK---GADFKPLEPVL 361
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
E ++ +I G I L V M +AV A +AT GD ++LSP
Sbjct: 362 EKVSQ---LIVLGKDADKIA------ALKPEAIKVTTMAEAVLKANELATAGDIVILSPA 412
Query: 379 CASFDEFRNFEHRGMVFQEL 398
C+S D + NF RG F+ L
Sbjct: 413 CSSLDMYPNFMARGDEFRSL 432
>gi|379009801|ref|YP_005267614.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Wigglesworthia
glossinidia endosymbiont of Glossina morsitans morsitans
(Yale colony)]
gi|375158325|gb|AFA41391.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Wigglesworthia
glossinidia endosymbiont of Glossina morsitans morsitans
(Yale colony)]
Length = 438
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 107/358 (29%), Positives = 178/358 (49%), Gaps = 33/358 (9%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV +G++ ++ GI +GGNLG P A + + +K Q+ ++
Sbjct: 107 IIAITGSNGKSTVTAMLGKIASYAGIPVGMGGNLGTP----ALNLL----NKKDCQLYII 158
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSHMVNTKLGLLPF 163
EVSS+Q+E K VS +LN+T DH++R+ + Y K ++S+ +K+ L+
Sbjct: 159 EVSSFQLESTFK-LNTLVSSILNVTHDHMDRYPLGINQYRAYKLKIYSY---SKINLINL 214
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
+ L I N G + V +V L+ +MK+ G HNY
Sbjct: 215 -DDPLTWPIDNDNKNCVGFSKNSGTYQIKNIHNDMWLVANKQIV--LKCSHMKIRGYHNY 271
Query: 224 HNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEAT 283
N A++AL++ + + A+ ++ HR Q+V + V W++DSK+TN+E+T
Sbjct: 272 MN-ALSALAIADI-VNFPRIAIVKALKNFSGLSHRFQLVLKR-NNVIWINDSKSTNVEST 328
Query: 284 CTGLMDLKGHKCV-ILLGGQAKVLNGQESNGFEKLIEPLNHHRC-VITFGYSGVLIWKTL 341
T LM + +LLGG +K N L L + + FG L+ K
Sbjct: 329 KTALMSTNTQGNIHLLLGGDSKSAN------LLTLSNILKRKKVKLYCFGKDAYLLSKIH 382
Query: 342 VNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
N +S +K ++ ++ +GD ++LSP C+S D+F+NF+ RG F +LA
Sbjct: 383 TNAEVS------CTLKQSIIKIKKNIHSGDVVLLSPACSSLDQFKNFKDRGNRFIQLA 434
>gi|239947262|ref|ZP_04699015.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
endosymbiont of Ixodes scapularis]
gi|239921538|gb|EER21562.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
endosymbiont of Ixodes scapularis]
Length = 453
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 105/385 (27%), Positives = 179/385 (46%), Gaps = 49/385 (12%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
+ S++D + R + +AVTGTNGKST + +LN G++ V GN+G
Sbjct: 90 ITSDIDLLFEK-SRILNFIAVTGTNGKSTTTALISHILNSNGLDYPVAGNIG-------V 141
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ +SK + V+E+SS+Q+++ K F ++V+LN+TPDHL+RH+ M Y K
Sbjct: 142 SALRAKASKDGY---VLELSSFQLDLV-KTFTAKIAVLLNITPDHLDRHQDMTGYIAAKS 197
Query: 148 HLFSHMVNTKLGLLPFGNQHL---------NEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+F M ++ N + + IK F++ I + +D + K
Sbjct: 198 KIFDRMDKKSYAVINIDNDYCRKIFMLLQQEQRIKLIPFSVTKILENGILVVDDKIKDND 257
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
+S N + G HNY N +AA + IGV+ + + +I ++ PHR
Sbjct: 258 --------ISYKLSFNKNLQGLHNYEN--IAASYAVAKIIGVEPKKIIESISSFQSLPHR 307
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
MQ + I +++ +DSKATN + + +K + L G G I
Sbjct: 308 MQYIGS-INNISFYNDSKATN---AISAVQSIKALDNIYWLAGGTPKGGG---------I 354
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVA-NMKDAVNHARRMATNGDA----I 373
E + + I Y + N +I F + +++ A + A + A +A I
Sbjct: 355 EEIKPYFSKIKKAYFYGQAKEIFANTAKNIVDFVICDDLEQAFDLAYKDAIGDNAEVKNI 414
Query: 374 VLSPGCASFDEFRNFEHRGMVFQEL 398
+L+P C+S+D+F+NFE RG +F +L
Sbjct: 415 LLAPSCSSYDQFKNFEERGELFIKL 439
>gi|125717507|ref|YP_001034640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
sanguinis SK36]
gi|158513223|sp|A3CLN5.1|MURD_STRSV RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|125497424|gb|ABN44090.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase, putative
[Streptococcus sanguinis SK36]
Length = 450
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 107/379 (28%), Positives = 183/379 (48%), Gaps = 37/379 (9%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A + I+ +TG+NGK+T T + Q+L G + GN+G P S+ A
Sbjct: 99 VITEVELAYLI--SEAPIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSGNIGFPASQVAQ 156
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
SSK + V+E+SS+Q+ + + F P ++V+ NL P HL+ H +++ YA K
Sbjct: 157 TA----SSK---DMLVMELSSFQL-MGIEDFHPQIAVITNLMPTHLDYHGSVEEYAAAKW 208
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTASFEVPA 203
++ +M +L F E + A + F K+D E +F A
Sbjct: 209 NIQKNMTADDYLVLNFNQDWAKEMASQTQ---ATVVPFSTTEKVDGAYLEGDVLTFRGEA 265
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
+ +Q+ + V G HN N A+A ++V L G+D + + + HR+Q V
Sbjct: 266 I-----MQVAEIGVPGSHNVEN-ALATIAVAKLR-GIDNQTIKEVLSAFGGVKHRLQYVG 318
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
+ + V + +DSK+TN+ AT L K +++ GG + N F++L+ L
Sbjct: 319 Q-VNEVAFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELVPDLKG 371
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 383
+ ++ G S + + G+S +++DA + A A GD ++LSP AS+D
Sbjct: 372 LKKMVILGQSAARVKRAADQAGVS--YLDATDVRDAAHKAFAQAEPGDIVLLSPANASWD 429
Query: 384 EFRNFEHRG----MVFQEL 398
+ NFE RG F+EL
Sbjct: 430 MYSNFEVRGDEFLAAFEEL 448
>gi|91205696|ref|YP_538051.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
bellii RML369-C]
gi|118595687|sp|Q1RI52.1|MURD_RICBR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|91069240|gb|ABE04962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia bellii
RML369-C]
Length = 450
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 182/375 (48%), Gaps = 51/375 (13%)
Query: 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ 100
+ + +LAVTGTNGKST + +L+ G++ V GN+G P+ +A +SK +
Sbjct: 102 KGLNLLAVTGTNGKSTTTALISHILSDNGLDYPVAGNIGVPVLQA-------KASKGGY- 153
Query: 101 VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160
V+E+SS+Q+++ K F ++V+LN+TPDHL+RH+ M+ Y K +F M G+
Sbjct: 154 --VLELSSFQLDLV-KTFAAKIAVLLNITPDHLDRHENMEGYITAKSKIFDRMDKDSYGI 210
Query: 161 LPFGNQHLNEA---------IKGHRFNLAWIGAFPGVKIDTEAKTAS-FEVPAVGVVSQL 210
+ N + +E IK F++ I G+ I + T + FE + ++S
Sbjct: 211 INIDNDYCHEIFTNLQQKHHIKLIPFSVTKILE-KGISIVNDIITDNFFEHISFKLIS-- 267
Query: 211 QLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQG 268
N + G HN N A+ A ++GL+ +E+++S + PHRMQ + +I
Sbjct: 268 ---NKSLQGIHNSENIAASYAVARIIGLEPVKIIESISS----FQGLPHRMQYL-GNIDD 319
Query: 269 VTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVI 328
+ + +DSKA+N A + L L GG AK E IE + + I
Sbjct: 320 INFYNDSKASNAIAAVQSIKALDN--IYWLAGGIAK----------EGGIEEIKPYFSKI 367
Query: 329 TFGYSGVLIWKTLVNNGLSIPCFAVA-NMKDAVNHARRMATNGDA----IVLSPGCASFD 383
Y + N I F + ++K A A + A + I+L+P C+S+D
Sbjct: 368 KKAYFYGQAKEMFANTAKDIIDFVICDDLKQAFELAYKDACKDNEKEKNILLAPCCSSYD 427
Query: 384 EFRNFEHRGMVFQEL 398
+F+NFE RG +F L
Sbjct: 428 QFKNFEERGELFIRL 442
>gi|295135636|ref|YP_003586312.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Zunongwangia
profunda SM-A87]
gi|294983651|gb|ADF54116.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Zunongwangia
profunda SM-A87]
Length = 445
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 105/384 (27%), Positives = 188/384 (48%), Gaps = 27/384 (7%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ L G V+SE++FAAQ S I+ +TG+NGK+T +L G++ + GN
Sbjct: 80 IKALRAKGIPVISEIEFAAQYT--SAVIVGITGSNGKTTTTKLTHHILKDGGLQVGMAGN 137
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G+ ++ A V+E+SS+Q++ K F P ++V+ N+TPDHL+R++
Sbjct: 138 VGDSFAKQVAETNA--------GYYVLELSSFQLDGIEK-FRPHIAVLTNITPDHLDRYE 188
Query: 138 -TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT 196
+NY K + + + ++ + +K ++ + K++ A
Sbjct: 189 YKFENYIEAKFRITKNQTKDDYFIYDADDEVITNWLKTNKIEAQLLPFSLERKLENGAYL 248
Query: 197 ASFEVPAVGVVSQLQL--HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
+ + ++L + ++ + G+HN NA AA L I + + ++E +
Sbjct: 249 ENDTIIIKTENTELTMATSDLTLQGKHNTKNAMAAATVAKLLKIRKNT--IRESMESFQG 306
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGF 314
HR++ V + I V +++DSKATN+ AT L ++G V +LGG K N +
Sbjct: 307 VEHRLEKVLK-INNVQYINDSKATNVNATYYALESMEGQ-TVWILGGVDK------GNVY 358
Query: 315 EKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
++L+ +N + +I G I + N ++ +M +AV A R++ GD +
Sbjct: 359 DELLPLVNEKVKAIICLGVDNTKIMNSFGNCVETL--IETQSMSEAVKMAYRLSEKGDTV 416
Query: 374 VLSPGCASFDEFRNFEHRGMVFQE 397
+LSP CASFD F N+E RG F+E
Sbjct: 417 LLSPACASFDLFENYEDRGRQFKE 440
>gi|422871415|ref|ZP_16917908.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis SK1087]
gi|328945583|gb|EGG39734.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis SK1087]
Length = 459
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 108/379 (28%), Positives = 181/379 (47%), Gaps = 37/379 (9%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A + I+ +TG+NGK+T T + Q+L G + GN+G P S+ A
Sbjct: 108 VITEVELAYLI--SEAPIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSGNIGFPASQVAQ 165
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
SSK V+E+SS+Q+ I + F P ++V+ NL P HL+ H +++ YA K
Sbjct: 166 TA----SSKDTL---VMELSSFQL-IGIEDFHPQIAVITNLMPTHLDYHGSVEEYAAAKW 217
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTASFEVPA 203
++ +M +L F E + A + F K+D E +F A
Sbjct: 218 NIQKNMTADDYLVLNFNQDWAKEMASQTQ---ATVMPFSTTEKVDGAYLEGDVLTFRGEA 274
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
+ +Q + V G HN N A+A ++V L G+D + + + HR+Q V
Sbjct: 275 I-----MQAAEIGVPGSHNVEN-ALATIAVAKLR-GIDNQTIKEVLSAFGGVKHRLQYVG 327
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
+ + V + +DSK+TN+ AT L K +++ GG + N F++L+ L
Sbjct: 328 Q-VNEVAFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELVPDLKG 380
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 383
+ ++ G S + + G+S +++DA + A A GD ++LSP AS+D
Sbjct: 381 LKKMVILGQSAPRVKRAADQAGVS--YLDATDVRDAAHKAFAQAEPGDIVLLSPANASWD 438
Query: 384 EFRNFEHRG----MVFQEL 398
+ NFE RG F+EL
Sbjct: 439 MYSNFEVRGDEFLAAFEEL 457
>gi|160945307|ref|ZP_02092533.1| hypothetical protein FAEPRAM212_02826 [Faecalibacterium prausnitzii
M21/2]
gi|158443038|gb|EDP20043.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Faecalibacterium prausnitzii M21/2]
Length = 467
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 116/391 (29%), Positives = 185/391 (47%), Gaps = 42/391 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+ +G V SE++ P +I+AVTG++GK+T T + + G + +GGN+G
Sbjct: 100 MAAGTMVTSEVELFFDFCP--CEIVAVTGSDGKTTTTTLISKFYEAAGRKVHLGGNIGAA 157
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
L LP P+ VAVVE+SS+Q+ + + P ++VV N+TP+HL+ HK M+
Sbjct: 158 L------LPMLPEVSPE-DVAVVELSSFQL--ISMHASPNIAVVTNVTPNHLDHHKDMQE 208
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQ---HLNEAIKGH-----RFNLAWIGAFPGVKIDTE 193
Y K ++ + +L + N+ + KG R + GAF
Sbjct: 209 YINAKRNILLYQKQPCRAVLGYENEISRSMQADCKGKQVWFTRLHDTDNGAF------LR 262
Query: 194 AKTASFEVPAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
+ + GVV+ L ++K+ G HN N AA +V G V VEA+
Sbjct: 263 KEDGMLCMAEDGVVTPFLAQKDVKLRGLHNIENLLAAAAAVWG---EVPVEAIRQVGSTF 319
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
HR++ V R + GV + +DS T+ T GL K +++ GG K +
Sbjct: 320 TGVEHRIEPV-RTLDGVLYYNDSIGTSPTRTIAGLRSFD-RKVILIAGGYDKHIP----- 372
Query: 313 GFEKLI-EPLNHHRCVITFGYSGVLIWKTLVN----NGLSIPCFAVANMKDAVNHARRMA 367
+E L E + H + ++ G +G I + + + ++P NM+ AV AR A
Sbjct: 373 -YEPLAPEIIAHVKNLVLMGATGPRIEQAVRECSGFDEAALPIQHADNMQHAVELARAAA 431
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
GD I+LSP ASFD + NFE RG F+++
Sbjct: 432 KPGDIIILSPASASFDLYPNFEVRGREFKKI 462
>gi|317474535|ref|ZP_07933809.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
eggerthii 1_2_48FAA]
gi|316909216|gb|EFV30896.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
eggerthii 1_2_48FAA]
Length = 444
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 104/387 (26%), Positives = 187/387 (48%), Gaps = 39/387 (10%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+GN
Sbjct: 82 LKEKGIPIISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGN 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL + K V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAMEKHDYYVIELSSFQLD--NMYKFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+ Y K + + + P + L + +K H + A + G E
Sbjct: 190 MQKYVDAKFRITQNQTPEDAFIYWNDDPIIRRELEKHGLKAHPYPFAAVKE-DGAIAYVE 248
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTIEIL 252
P + ++ + + G HN +N+ A +S L G+ E + +
Sbjct: 249 DGEVEINEP---IAFNMEQEELALHGTHNLYNSLAAGISANLA---GIKKEDIRKALSDF 302
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
+ HR++ V ++G+ +++DSKATN+ + L + K V++LGG+ K G +
Sbjct: 303 KGVEHRLEKVAT-VRGIQFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK---GNDYT 357
Query: 313 GFEKLIEPLNHHRC--VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 370
E+L+ +C +I G + + GL + MKDAV A ++A G
Sbjct: 358 EIEELVRT----KCSALIYLGLHNEKLHEFFDRFGLPVADVQTG-MKDAVEAAFQLAKKG 412
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVFQE 397
+ ++LSP CASFD F+++E RG F++
Sbjct: 413 ETVLLSPCCASFDLFKSYEDRGDQFKK 439
>gi|450068040|ref|ZP_21846964.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NLML9]
gi|449207728|gb|EMC08396.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NLML9]
Length = 451
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 111/380 (29%), Positives = 188/380 (49%), Gaps = 37/380 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTEKDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q + +I V + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQSLG-NIADVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR---RMATNGDAIVL 375
+ + +I G S + V G++ N KD R + A+ GD ++L
Sbjct: 367 PDIKGLKKMIILGESAPRLKHAAVQAGVT-----YLNAKDVAQATRIAFQEASPGDVVLL 421
Query: 376 SPGCASFDEFRNFEHRGMVF 395
SP AS+D ++NFE RG F
Sbjct: 422 SPANASWDMYKNFEVRGDEF 441
>gi|357037242|ref|ZP_09099042.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfotomaculum
gibsoniae DSM 7213]
gi|355361407|gb|EHG09162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfotomaculum
gibsoniae DSM 7213]
Length = 450
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 127/395 (32%), Positives = 190/395 (48%), Gaps = 51/395 (12%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q G V+ EL+ A + S ++A+TGTNGK+T T VG++ G+ VGGN+G PL
Sbjct: 90 QYGIPVLGELELAYRFA--SAPMVAITGTNGKTTTTTLVGEIFRMAGLRTLVGGNIGLPL 147
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ + PK + + EVSS+Q+E N +F P V+VVLN+TPDHL+RH +M+ Y
Sbjct: 148 VD------VVEDYGPK-DIIIAEVSSFQLETAN-HFKPRVAVVLNITPDHLDRHGSMEGY 199
Query: 143 ALTKCHLFSHMVNTKLGLLPF---GNQHLNEAIKG------HRFNLAWIGAFPGVKIDTE 193
K +F+ +L + G + L A G + NL G I
Sbjct: 200 IEAKARIFARQGPEDFTVLNYDDPGTRALAGATSGKVIFFSRKHNLEEGVLVRGDMIAVR 259
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
K ++ + + + G HN NA A + +GV E L ILR
Sbjct: 260 HKGIDTDI--------IPPREVAIPGVHNLENALAAVAAA--FALGVRPEVL---ARILR 306
Query: 254 TPP---HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
+ P HR++ V + GV +V+DSK TN +A+ L V+L GG+ K G +
Sbjct: 307 SFPGVAHRLETVAQK-DGVLFVNDSKGTNPDASIKALKAFD-RPIVLLAGGRNK---GSD 361
Query: 311 SNGFEKLIEPLNHHRCVITFGYSGVLIWKTL----VNNGLSIPCFAVANMKDAVNHARRM 366
+ F +LI+ R ++ G + + NN L P F ++AV A
Sbjct: 362 FSEFARLIK--QKVRVLVVLGECAGEVERAARAAGCNNVLKAPGF-----REAVLMAHAS 414
Query: 367 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 401
A GD ++LSP CAS+D F NFE RG +F+E+ +
Sbjct: 415 AKPGDVVLLSPACASWDMFNNFEERGDLFREIVLN 449
>gi|322391625|ref|ZP_08065094.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
peroris ATCC 700780]
gi|321145708|gb|EFX41100.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
peroris ATCC 700780]
Length = 450
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 103/377 (27%), Positives = 175/377 (46%), Gaps = 31/377 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ G V +E++ A + I+ +TG+NGK+T T +GQ+L G + GN+G P
Sbjct: 93 LEKGMPVWTEVELAYLI--SEAPIVGITGSNGKTTTTTMIGQVLTAAGQNGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S H + K V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 AS----HVAQTATDKDTL---VMELSSFQL-MGIESFHPEIAVITNLMPTHIDYHGSFEA 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGN---QHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
Y K ++ +M +L F + L E + + + G + E
Sbjct: 203 YVAAKWNIQKNMTAADYLVLNFNQDLAKELAEKTQASVVPFSTLEKVDGAYL--ENGLLY 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F AV + + V G HN N A+A ++V + GVD E + T+ HR
Sbjct: 261 FRGEAV-----MAADEIGVPGSHNVEN-ALATIAVAKIR-GVDNETIKETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q +I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQYAD-EINGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
+ + ++ G S + + G + ++ DA A +A GD ++LSP
Sbjct: 367 PDIKGLKKMVILGQSAERVKRAADKAG--VEYVDATDIADATRKAYHLAGTGDIVLLSPA 424
Query: 379 CASFDEFRNFEHRGMVF 395
AS+D + NFE RG +F
Sbjct: 425 NASWDMYPNFEVRGDLF 441
>gi|449898449|ref|ZP_21790621.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans R221]
gi|449976942|ref|ZP_21816404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 11VS1]
gi|449175036|gb|EMB77482.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 11VS1]
gi|449259783|gb|EMC57302.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans R221]
Length = 451
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 111/380 (29%), Positives = 189/380 (49%), Gaps = 37/380 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ+L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTEKDFLVLNF-NQNLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q + +I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR---RMATNGDAIVL 375
+ + +I G S + V G++ N KD R + A+ D ++L
Sbjct: 367 PDIKGLKKMIILGESAPRLKHAAVQAGVT-----YLNAKDVAQATRIAFQEASPEDVVLL 421
Query: 376 SPGCASFDEFRNFEHRGMVF 395
SP AS+D ++NFE RG F
Sbjct: 422 SPANASWDMYKNFEVRGDEF 441
>gi|408356951|ref|YP_006845482.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Amphibacillus
xylanus NBRC 15112]
gi|407727722|dbj|BAM47720.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Amphibacillus
xylanus NBRC 15112]
Length = 448
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 184/376 (48%), Gaps = 34/376 (9%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V +E++ + +I S ++ +TG+NGK+T + +L++ +++ V GN+G E A
Sbjct: 98 VRTEIELLSYLI--SQPVIGITGSNGKTTTTMLIDDILSNSKMKSRVAGNIGTVAVEVAE 155
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ + V+E+SS+Q+ + +F P VSV+LNL HL+ H NY K
Sbjct: 156 QL-------QEDETLVLELSSFQL-MGIDHFSPKVSVLLNLFEAHLDYHGDFNNYQEAKA 207
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
+F+ + + + + I+ + L P D + + A + V
Sbjct: 208 MIFNQQTEADYLVYNADDPRVCQLIQSAKATLV-----PFSIKDKQLEGAWVDEQYVYFK 262
Query: 208 SQ--LQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
Q ++L +++++G HN N A++AA L +G ++E +N T+ HR+Q V
Sbjct: 263 DQQIIKLTDIRLVGEHNLANCLASIAA----SLLVGANLEGINQTLTTFAGVRHRLQFV- 317
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
+ G + +DSKATN+ AT L K +++ GG + N F+ L+ L +
Sbjct: 318 TERNGRQFYNDSKATNILATSKALASFK-QPTMLIAGGLDR------GNAFDDLVPFLTN 370
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMAT-NGDAIVLSPGCASF 382
+ + +G + + + G+ I A D + HA A+ NGD I+LSP CAS+
Sbjct: 371 VKGMFLYGETASKLAEAAHKAGVEI--IEQAETLDQMVHAAYAASENGDVILLSPACASW 428
Query: 383 DEFRNFEHRGMVFQEL 398
D+F+ FE RG +F EL
Sbjct: 429 DQFKTFEERGDMFIEL 444
>gi|398348161|ref|ZP_10532864.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira broomii
str. 5399]
Length = 449
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 117/378 (30%), Positives = 177/378 (46%), Gaps = 34/378 (8%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++FA K++ VTGT+GKST + +L+ A GGN+G+ S+
Sbjct: 90 VVSEVEFARAFF--FGKLIGVTGTDGKSTTTALICHLLSKDFPGAQAGGNIGHAFSDFCL 147
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
I L +V+E+SSYQ+E + VSV+LNL PDHLERH T+ NY K
Sbjct: 148 GPIPL---------SVLELSSYQLE-DSGPLSLDVSVILNLAPDHLERHGTLDNYFAAKA 197
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFN-LAWIGAFPGVKIDTEAKTASFEVPAVGV 206
+ N+ L ++ E I+ + N L IG F G + +A+ E
Sbjct: 198 RIIDK--NSSKHTLIVSSKLFRERIQ--QMNCLCKIGTF-GREEGNDARILDEERIIQTA 252
Query: 207 VSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI 266
++ N + G HN N + + L+ G + + I PHR Q R
Sbjct: 253 KAEYDAKNFPLPGGHNLENLSASILAAEA--AGGNPVNIQQAISGFMGLPHRFQQAGR-A 309
Query: 267 QGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKVLNGQESNGFEKLIEPLNHH- 324
GVT+++DSK+TNL + G+ K K ++LGG+ K S FE L + L
Sbjct: 310 AGVTFINDSKSTNLHSMLAGMSTWKEKKTTCLILGGRPK------SESFEPLKQFLKSGI 363
Query: 325 RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA----IVLSPGCA 380
VI FG + W ++ + V ++ +A + + +G A +V SP CA
Sbjct: 364 GWVILFGEARA-AWAAEISPLIGDHLVTVEDLGEAFSWLKTAIRSGRARLQSVVFSPACA 422
Query: 381 SFDEFRNFEHRGMVFQEL 398
SFD+++NFE RG F L
Sbjct: 423 SFDQYKNFEERGEHFLSL 440
>gi|398343119|ref|ZP_10527822.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira inadai
serovar Lyme str. 10]
Length = 449
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 117/378 (30%), Positives = 174/378 (46%), Gaps = 34/378 (8%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++FA K++ VTGT+GKST +L+ A GGN+G S+
Sbjct: 90 VVSEVEFARAFF--FGKLIGVTGTDGKSTTTALTCHLLSKDFPGAQAGGNIGRAFSDFCL 147
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ L AV+E+SSYQ+E + VSV+LNL PDHLERH T+ NY K
Sbjct: 148 GPVPL---------AVLELSSYQLE-DSGPLSLDVSVILNLAPDHLERHGTLDNYFAAKA 197
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFN-LAWIGAFPGVKIDTEAKTASFEVPAVGV 206
+ N+ L ++ E I+ + N L IG F G + +A+ E
Sbjct: 198 RIIDK--NSSKHTLVVSSKLFRERIQ--QMNCLCKIGTF-GREEGNDARILDEERIIQTA 252
Query: 207 VSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI 266
++ + G HN N + + L+ +G + + I PHR Q R
Sbjct: 253 KAEYDAKAFLLPGGHNLENLSASILAAEA--VGGNPANIQQAISGFTGLPHRFQQAGR-A 309
Query: 267 QGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKVLNGQESNGFEKLIEPLNHH- 324
GVT+++DSK+TNL + G+ K K ++LGG+ K S FE L + L
Sbjct: 310 AGVTFINDSKSTNLHSMLAGMSTWKEKKSTCLILGGRPK------SESFEPLKQFLKSGI 363
Query: 325 RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA----IVLSPGCA 380
VI FG + W ++ L + N+ +A + +G A +V SP CA
Sbjct: 364 GWVILFGEARA-AWAAEISPILGVHFVTAENLDEAFFWLKTAIRSGRARLKSVVFSPACA 422
Query: 381 SFDEFRNFEHRGMVFQEL 398
SFD+++NFE RG F L
Sbjct: 423 SFDQYKNFEERGEHFLNL 440
>gi|269967387|ref|ZP_06181447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
alginolyticus 40B]
gi|269827975|gb|EEZ82249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
alginolyticus 40B]
Length = 437
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 114/398 (28%), Positives = 181/398 (45%), Gaps = 65/398 (16%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ +L G V+ +++ A + + + +A+TG+NGKSTV G M G++ VGGN
Sbjct: 85 IQAVLAKGTAVVGDIELFAWAVQKPV--IAITGSNGKSTVTDLTGVMAKAAGLDVGVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P AL + + V+E+SS+Q+E + + LNL+ DH++R++
Sbjct: 143 IGVP---------ALDLLEQDADLYVLELSSFQLETMSSLKL-KAAAFLNLSEDHMDRYQ 192
Query: 138 TMKNYALTKCHLFSHMV-------------NTKLGLLPFG--NQHLNEAIKGHRFNLAWI 182
M +Y K +F+H + ++ L+ FG NQ + G+R W+
Sbjct: 193 GMSDYRQAKLRIFNHAALAVVNRDDQETFPDAEMPLVTFGSDNQDFGFEVDGNR---TWL 249
Query: 183 GAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242
+D + + + +K++G+HN NA VA + D+
Sbjct: 250 -------LDHGQRVVASD-------------ELKLVGKHNLSNALVALALLKAADVNYH- 288
Query: 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILLGG 301
ALN+ ++ HR Q+V D QGV WV+DSKATN+ +T L L+ K +L+GG
Sbjct: 289 NALNA-LKNYTGLTHRCQVV-ADNQGVKWVNDSKATNIASTMAALSGLESTGKLYLLVGG 346
Query: 302 QAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVN 361
K G + + + + LN C FG G L M+D +
Sbjct: 347 VGK---GADFSPLKPIFATLNLQLCC--FGADGDEFMP------LHESAIRFDTMEDVIQ 395
Query: 362 HARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
GD ++LSP CASFD+F NF RG F LA
Sbjct: 396 QVSSQLKPGDMVMLSPACASFDQFDNFMARGDAFAALA 433
>gi|452944671|ref|YP_007500836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hydrogenobaculum
sp. HO]
gi|452883089|gb|AGG15793.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hydrogenobaculum
sp. HO]
Length = 411
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 182/378 (48%), Gaps = 39/378 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV-GGNLGN 80
++S K ++ E + A + + I+AVTGT+GKST V +++H +F GGN G
Sbjct: 65 IKSSKELIGETELAYRFY-KGKNIIAVTGTDGKSTTV----HLIHHF--TSFKEGGNFGT 117
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P SE I L + K + V+EVSS+Q + + F P V V LN + DHL+ H +++
Sbjct: 118 PFSE-----IILDNDK---EDVVLEVSSFQGKTLDT-FRPNVGVFLNFSKDHLDWHPSLE 168
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFE 200
+Y L+K +F + + +L + + G V D K F
Sbjct: 169 DYLLSKQKIFKNQTQEDILILNAQKPVCDTPSLAKKIFFGENGDLKVVGSDVYYKDELF- 227
Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
+ + ++K G HN +N AVA S + +G+ +E + +E P R Q
Sbjct: 228 ------IENISHPSLK--GLHNLYNIAVA--SFVAFSMGISLEEIKKKLETFEALPFRYQ 277
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP 320
+ + +G+ +DSK+T + A + L K +++ GG K G + + E +
Sbjct: 278 YL-GNFEGIDIYNDSKSTTVNALTSALESTKA-PILLIAGGIDK---GGDFSSIEAYKDK 332
Query: 321 LNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 380
+ + V +G LI K + + L + + + +++ A+ A+ A GD I+ SP CA
Sbjct: 333 I---KAVFLYGKDKNLI-KDQIEHFLKV--YVLEDLESALLKAKEQARKGDTILFSPACA 386
Query: 381 SFDEFRNFEHRGMVFQEL 398
SFD F +++HRG VF EL
Sbjct: 387 SFDMFESYKHRGKVFTEL 404
>gi|384917152|ref|ZP_10017283.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylacidiphilum
fumariolicum SolV]
gi|384525411|emb|CCG93156.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylacidiphilum
fumariolicum SolV]
Length = 438
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 109/389 (28%), Positives = 176/389 (45%), Gaps = 41/389 (10%)
Query: 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
++ + LA ++++ + D Q P I I +TG+ GKST + + +L G+EA
Sbjct: 81 IRTSHLAIEPSIKEKIVLQTDLFLQFWP-GITI-GITGSKGKSTTTSLIHHLLKTNGLEA 138
Query: 73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFC---PTVSVVLNLT 129
++GGN+G P FH I S K +AV+E+SSYQ+E +C P++++ LNL
Sbjct: 139 YIGGNIGVP----PFHLIPFASEK---AIAVLELSSYQLE-----YCRHSPSIAIWLNLY 186
Query: 130 PDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVK 189
+HL H + + Y+L K ++ + L N L+E LA I PG
Sbjct: 187 QEHLNYHGSFEAYSLAKSNIARFQSSENFFLYNADNPSLSEF-------LASIDPMPGKL 239
Query: 190 IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
I + K + + G HN NA AAL+ G+ + + +
Sbjct: 240 IAVDDKWQ----------ETFDCSRLHLPGEHNKRNALFAALTASLF--GISAKKIAESF 287
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
PHR++ V I+GV++ +DS AT EAT G+ + + +I LGGQ + G
Sbjct: 288 ASFYGLPHRLEYV-ATIEGVSYYNDSIATVPEATLAGIEAIPNVESLI-LGGQDR---GL 342
Query: 310 ESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN 369
GF + + R +I +G I F ++++AV A + T
Sbjct: 343 PLEGFASKLCQTRNLRNIILLPETGWRIGTFFERKNHKKNIFFAKDLEEAVIIASKFTTK 402
Query: 370 GDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
G + + SP S+ + NFE RG F+ L
Sbjct: 403 GSSCLFSPAAPSYHRYLNFEKRGEHFKWL 431
>gi|212639658|ref|YP_002316178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Anoxybacillus
flavithermus WK1]
gi|212561138|gb|ACJ34193.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Anoxybacillus
flavithermus WK1]
Length = 447
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/368 (27%), Positives = 168/368 (45%), Gaps = 24/368 (6%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
+++E++ A + I+ +TG+NGK+T T + ML + GN+G E A
Sbjct: 96 IITEVEIAYET--SEAPIIGITGSNGKTTTTTLIYHMLQEAKRRPLIAGNIGTVACEVAK 153
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
H K + V+E+SS+Q+ + F P ++V+LN+ HL+ H T + YA K
Sbjct: 154 HAT-------KDDIIVMELSSFQL-LGTIRFRPHIAVLLNIFDAHLDYHGTKEAYAEAKG 205
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
++F + T ++ + + + K R + K + ++
Sbjct: 206 NIFKNQTETDYAVVNADDPIVMQLAKKSRARHVPFSVKTPLSYGATVKEGAIYFHDERII 265
Query: 208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQ 267
++ + G HN N + A G D EA+ + PHR+Q V +I
Sbjct: 266 DTT---DVALRGTHNLEN--ILAAVAAAKLAGADNEAIRRVLTTFTGVPHRLQFV-AEIN 319
Query: 268 GVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCV 327
G + +DSKATN+ AT L H+ VILL G N F++L+ H + V
Sbjct: 320 GRKFYNDSKATNILATQKALSAF--HEPVILLAGGL-----DRGNEFDELLPYFKHVKAV 372
Query: 328 ITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
ITFG + I + G+ V N++ A A ++ GD I+LSP CAS+D+++
Sbjct: 373 ITFGQTAPKIERVAREAGIQ-QVKRVDNVEQAAFAAYEWSSPGDIILLSPACASWDQYKT 431
Query: 388 FEHRGMVF 395
FE RG +F
Sbjct: 432 FEQRGDMF 439
>gi|452855470|ref|YP_007497153.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|452079730|emb|CCP21487.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 451
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 110/377 (29%), Positives = 182/377 (48%), Gaps = 32/377 (8%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V +E++ A + + K + +TG+NGK+T T + +ML I+A + GN+G
Sbjct: 95 RRGIPVWTEIELAYYIT--NAKFIGITGSNGKTTTTTLIYEMLKADSIKALIAGNIGTVA 152
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
SE A+H + V E+SS+Q+ + F P + ++LN+ HL+ H + +NY
Sbjct: 153 SEVAYHA-------DGDEWIVTELSSFQL-MGTHAFRPEIGLILNVFDAHLDYHHSRENY 204
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K +++ H + + ++ NQ ++ A G P + E + +F
Sbjct: 205 EKAKQNVYLHQLESDTAIV---NQSDETVVRLAESGKA--GTVP-FSVHQELSSGAFIKD 258
Query: 203 AV---GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ G + L + ++ + G HN N + A G +A+ + HR+
Sbjct: 259 GMLMFGDEAILPVDDIVLPGAHNLEN--ILAAVAAAKTAGASNKAIQKVLTSFTGVKHRL 316
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319
Q V IQ + +DSKATN+ AT L K VILL G NGF+ L
Sbjct: 317 QYV-TAIQNRRFYNDSKATNILATSKALSAFKA--PVILLAGGL-----DRGNGFDDLKP 368
Query: 320 PLNHHRCVITFGYSGVLIWKTLVNNGLSIP-CFAVANMKDAVNHARRMATNGDAIVLSPG 378
+++ + V+TFG + I K + N L I V N++ AV+ A ++ GD I+LSP
Sbjct: 369 YMDNVKAVLTFGQTAPKIEK--LGNELGIQHVKRVDNVEQAVSAAFALSNEGDVILLSPA 426
Query: 379 CASFDEFRNFEHRGMVF 395
CAS+D+F+ FE RG +F
Sbjct: 427 CASWDQFKTFEERGDMF 443
>gi|395760936|ref|ZP_10441605.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Janthinobacterium lividum PAMC 25724]
Length = 520
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 115/405 (28%), Positives = 176/405 (43%), Gaps = 72/405 (17%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCI-----ALPSSKPK 98
K++A+TGTNGK+TV + VG + G+ V GN +S AA + A P +P
Sbjct: 120 KVIAITGTNGKTTVTSLVGLLCERAGLATRVAGN----ISPAALDVLREVLDAEPVPQPV 175
Query: 99 F----------------QVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
Q ++E+SS+Q+ + VLNL+ DHL+ H M +Y
Sbjct: 176 VKGEGEEAAQAVASTLPQAWILELSSFQLHT-TFSLQADAATVLNLSQDHLDWHGDMASY 234
Query: 143 ALTKCHLFSH---------------MVNTKLGLLPFGNQHLNEAIKGHRFNLA------W 181
A K +F H M N + FG E + F L W
Sbjct: 235 ASDKARIFGHQSVRILNRDDAAVMQMANPLAQTITFGT---GEPLAVDSFGLVNERGIFW 291
Query: 182 IG-AFPGVKIDTEAKTASFEVP-AVGVVSQ--LQLHNMKVMGRHNYHNAAVAALSVLGLD 237
+ A P ++ + + + P V +++ + +K+ G+HN NA A
Sbjct: 292 LAQAVPSEEVIEKKRRKNDPAPEPVPTMAKKLMPADALKIRGQHNASNALAALALCRA-- 349
Query: 238 IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL------K 291
IG+ L + + PHR++++ + V + DDSK TN+ AT L L
Sbjct: 350 IGLPFAPLLHGLREYQGEPHRVELITA-VNEVEYYDDSKGTNVGATVAALFGLGKAFGGA 408
Query: 292 GHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPC 350
+ V++ GG K GQ+ F L EP++ + R V+ G + L G+ I
Sbjct: 409 EQRLVLIAGGDGK---GQD---FSPLAEPVSRYVRAVVLIGRDAPALRTALEPAGVDI-- 460
Query: 351 FAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
F A + AV A +A GDA++LSP CAS D F+N+ HR VF
Sbjct: 461 FDCATLPQAVKRASSLALAGDAVLLSPACASMDMFKNYAHRAQVF 505
>gi|384265104|ref|YP_005420811.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|387898098|ref|YP_006328394.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
amyloliquefaciens Y2]
gi|380498457|emb|CCG49495.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|387172208|gb|AFJ61669.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
amyloliquefaciens Y2]
Length = 451
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 110/377 (29%), Positives = 182/377 (48%), Gaps = 32/377 (8%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V +E++ A + + K + +TG+NGK+T T + +ML I+A + GN+G
Sbjct: 95 RRGIPVWTEIELAYYIT--NAKFIGITGSNGKTTTTTLIYEMLKADSIKALIAGNIGTVA 152
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
SE A+H + V E+SS+Q+ + F P + ++LN+ HL+ H + +NY
Sbjct: 153 SEVAYHA-------DGDEWIVTELSSFQL-MGTHAFRPEIGLILNVFDAHLDYHHSRENY 204
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K +++ H + + ++ NQ ++ A G P + E + +F
Sbjct: 205 EKAKQNVYLHQLESDTAIV---NQSDETVVRLAESGKA--GTVP-FSVHQELSSGAFIKD 258
Query: 203 AV---GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ G + L + ++ + G HN N + A G +A+ + HR+
Sbjct: 259 GMLMFGNEAILPVDDIVLPGAHNLEN--ILAAVAAAKTAGASNKAIQKVLTSFTGVKHRL 316
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319
Q V IQ + +DSKATN+ AT L K VILL G NGF+ L
Sbjct: 317 QYV-TAIQNRKFYNDSKATNILATSKALSAFKA--PVILLAGGL-----DRGNGFDDLKP 368
Query: 320 PLNHHRCVITFGYSGVLIWKTLVNNGLSIP-CFAVANMKDAVNHARRMATNGDAIVLSPG 378
+++ + V+TFG + I K + N L I V N++ AV+ A ++ GD I+LSP
Sbjct: 369 YMDNVKAVLTFGQTAPKIEK--LGNELGIQHVKRVDNVEQAVSAAFALSNEGDVILLSPA 426
Query: 379 CASFDEFRNFEHRGMVF 395
CAS+D+F+ FE RG +F
Sbjct: 427 CASWDQFKTFEERGDMF 443
>gi|422852138|ref|ZP_16898808.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis SK150]
gi|325694125|gb|EGD36043.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis SK150]
Length = 459
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 105/378 (27%), Positives = 179/378 (47%), Gaps = 35/378 (9%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A + I+ +TG+NGK+T T + Q+L G + GN+G P S+ A
Sbjct: 108 VITEVELAYLI--SEAPIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSGNIGFPASQVAQ 165
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
SSK V+E+SS+Q+ + + F P ++ + NL P HL+ H +++ YA K
Sbjct: 166 TA----SSKDTL---VMELSSFQL-MGIEDFHPQIAAITNLMPTHLDYHGSVEEYAAAKW 217
Query: 148 HLFSHMVNTKLGLLPFGN---QHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
++ +M +L F + + + + G +D + T F A+
Sbjct: 218 NIQKNMTADDYLVLNFNQDWAKEMASQTQAAVVPFSTTEKVDGAYLDGDVLT--FRGEAI 275
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+Q + V G HN N A+A ++V L G+D + + + HR+Q V R
Sbjct: 276 -----MQAAEIGVPGSHNIEN-ALATIAVAKLR-GIDNQTIKEVLSAFGGVKHRLQYVGR 328
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH 324
+ V + +DSK+TN+ AT L K +++ GG + N F++L+ L
Sbjct: 329 -VNEVVFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELVPDLKGL 381
Query: 325 RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 384
+ ++ G S + + G+S +++DA + A A GD I+LSP AS+D
Sbjct: 382 KKMVILGQSAARVKRAADQAGVS--YLDATDVRDAAHKAFAQAEPGDIILLSPANASWDM 439
Query: 385 FRNFEHRG----MVFQEL 398
+ NFE RG F+EL
Sbjct: 440 YSNFEVRGDEFLAAFEEL 457
>gi|431928349|ref|YP_007241383.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
stutzeri RCH2]
gi|431826636|gb|AGA87753.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
stutzeri RCH2]
Length = 447
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 110/362 (30%), Positives = 169/362 (46%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+N KSTV T VG+M G + VGGNLG P AL ++ V+
Sbjct: 110 IIAITGSNAKSTVTTLVGEMAAAAGRKVAVGGNLGTP---------ALDLLADDVELYVL 160
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E + V+ LN++ DH++R+ + Y K +F +
Sbjct: 161 ELSSFQLETTGQ-LNAEVATCLNISEDHMDRYSGLPAYHQAKHRIFRGARQVVVNR---- 215
Query: 165 NQHLNEAIKGHRFNLAWIG----AFPGVKIDTEA--KTASFEVPAVGVVSQLQLHNMKVM 218
+ L+ + G G F G + E K +F+ A+ + + +K+
Sbjct: 216 DDRLSRPLIGDEVPTWTFGLGKPDFKGFGLFEEKGEKYLAFQFEAL-----MPVRELKMR 270
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A LG +G+ + T+ PHR Q V + V++ DDSKAT
Sbjct: 271 GAHNQSNALAA--LALGHAVGLPFAPMLETLRRFTGLPHRCQWVGQRGD-VSYYDDSKAT 327
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D+ G K V++ GG K + F L P+ + R V+ G
Sbjct: 328 NVGAALAAIEGLGADIDG-KLVLIAGGDGKGAD------FSGLRAPVARYCRAVVLLGRD 380
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
+ TL + + VA++++AV A A GDA++LSP CAS D F+NFE RG
Sbjct: 381 AQRLADTLDD---ATTLLHVASLEEAVRRAADCAEAGDAVLLSPACASLDMFKNFEERGR 437
Query: 394 VF 395
+F
Sbjct: 438 LF 439
>gi|325288828|ref|YP_004265009.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophobotulus
glycolicus DSM 8271]
gi|324964229|gb|ADY55008.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophobotulus
glycolicus DSM 8271]
Length = 454
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/358 (25%), Positives = 173/358 (48%), Gaps = 25/358 (6%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++ +TG+NGK+T T +G++ G A V GN+G +S L S + V
Sbjct: 109 VVGITGSNGKTTTTTLIGELAKKTGRPAVVAGNIGTAIS---GKVEGLGSRG----IVVA 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E+ ++ ++V++N+TPDHL+RH T++NYA K +F + L +L +
Sbjct: 162 ELSSFQLELIDRLRV-NIAVLINITPDHLDRHGTLENYAAAKARIFENQTGKDLAVLSWD 220
Query: 165 NQHLNEAIKGHRFNLAWIGA----FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGR 220
+ E K + + +I G+ + S + ++++ + +++ G+
Sbjct: 221 YPMVREYGKITQARVTYISTEELLADGIGLSGNDLVWSRDGKTTKIIAR---NELQLRGK 277
Query: 221 HNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
HN N +GL++G+ + + HR ++V G+ +++DSK TN
Sbjct: 278 HNLENVMCGI--AVGLEMGLSGPQIAEVLRGFAPVAHRQEVVG-SYDGILYINDSKGTNP 334
Query: 281 EATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKT 340
++ L + V++ GG+ K L+ E L E + ++ G + +
Sbjct: 335 DSAIKALQSYE-EPIVLIAGGKNKGLDMTEF-----LEEAKKRVKSLVLVGKAADDLEII 388
Query: 341 LVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
G+ AV + +D V+ A A GD ++LSP C S+D F+++E RG +F+ L
Sbjct: 389 AKKIGIKNIIKAV-DFEDCVDKAIAEAAKGDVVLLSPACTSWDMFKSYEERGELFKTL 445
>gi|418018054|ref|ZP_12657610.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
salivarius M18]
gi|345526903|gb|EGX30214.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
salivarius M18]
Length = 450
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 112/385 (29%), Positives = 180/385 (46%), Gaps = 39/385 (10%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+A L+ G V +E++ A V I+ +TG+NGK+T T + +LNH G + GN
Sbjct: 89 VARALEKGIPVWTEVELAYLV--SEAPIIGITGSNGKTTTTTMIADVLNHGGKSGVLSGN 146
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P SE A + V+E+SS+Q+ + F P ++V+ NL P H++ H
Sbjct: 147 IGFPASEVVQSVTAQDT-------LVMELSSFQL-MGIDSFHPHIAVITNLMPTHIDYHG 198
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKT 196
+ + Y K ++ + M +L F NQ L + + A + F V K+D
Sbjct: 199 SFEEYVAAKWNIQNQMTADDFVVLNF-NQDLAKELATQ--TKAQVVPFSTVEKVD----G 251
Query: 197 ASFEVPAVGVVSQL--QLHNMKVMGRHNYHNA----AVAALSVLGLDIGVDVEALNSTIE 250
A E + +L Q + V G HN NA AVA LS G+ +A+ T+
Sbjct: 252 AYLENGGLYFKGELVMQADEIGVPGSHNVENALATIAVAKLS------GISNQAIKETLA 305
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
HR+Q V I V + +DSK+TN+ AT L K +++ GG +
Sbjct: 306 SFGGVKHRLQFVDT-INEVRFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------ 358
Query: 311 SNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 370
N F++LI + + ++ G S + + G++ ++ DA A A+ G
Sbjct: 359 GNEFDELIPDITGLKKMVILGESAPRVKRAADKAGVT--YLDAKDVADATRIAFDQASAG 416
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVF 395
D ++LSP AS+D ++NFE RG F
Sbjct: 417 DVVLLSPANASWDMYKNFEVRGDEF 441
>gi|387761547|ref|YP_006068524.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
salivarius 57.I]
gi|339292314|gb|AEJ53661.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
salivarius 57.I]
Length = 450
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 112/385 (29%), Positives = 180/385 (46%), Gaps = 39/385 (10%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+A L+ G V +E++ A V I+ +TG+NGK+T T + +LNH G + GN
Sbjct: 89 VARALEKGIPVWTEVELAYLV--SEAPIIGITGSNGKTTTTTMIADVLNHGGKSGVLSGN 146
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P SE A A + V+E+SS+Q+ + F P ++V+ NL P H++ H
Sbjct: 147 IGFPASEVAQSVTAQDT-------LVMELSSFQL-MGIDSFHPHIAVITNLMPTHIDYHG 198
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKT 196
+ + Y K ++ + M +L F NQ L + + + F V K+D
Sbjct: 199 SFEEYVAAKWNIQNQMTADDFVVLNF-NQDLAKELATQ--TKTQVVPFSTVEKVD----G 251
Query: 197 ASFEVPAVGVVSQL--QLHNMKVMGRHNYHNA----AVAALSVLGLDIGVDVEALNSTIE 250
A E + +L Q + V G HN NA AVA LS G+ +A+ T+
Sbjct: 252 AYLENGGLYFKGELVMQADEIGVPGSHNVENALATIAVAKLS------GISNQAIKETLA 305
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
HR+Q V I V + +DSK+TN+ AT L K +++ GG +
Sbjct: 306 SFGGVKHRLQFVDT-INEVRFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------ 358
Query: 311 SNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 370
N F++LI + + ++ G S + + G++ ++ DA A A+ G
Sbjct: 359 GNEFDELIPDITGLKKMVILGESAPRVKRAADKAGVT--YLDAKDVADATRIAFDQASAG 416
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVF 395
D ++LSP AS+D ++NFE RG F
Sbjct: 417 DVVLLSPANASWDMYKNFEVRGDEF 441
>gi|254468605|ref|ZP_05082011.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [beta
proteobacterium KB13]
gi|207087415|gb|EDZ64698.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [beta
proteobacterium KB13]
Length = 444
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 105/373 (28%), Positives = 177/373 (47%), Gaps = 42/373 (11%)
Query: 34 FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALP 93
F Q+ + K++ +TGTNGK+T + + +L+ +++ GN+G P+ + +
Sbjct: 98 FLNQIDRKKTKLIGITGTNGKTTFCSLLASILSFNDLKSIAVGNIGIPI-------LNIL 150
Query: 94 SSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH- 152
+++ KF VVE+SSYQ+E+ +K V+LN+ PDHL+R+ + +Y K L +H
Sbjct: 151 TTQNKFDYIVVELSSYQIEVLDKMTVFDYGVILNIEPDHLDRYDSFIDYKNAKLKLANHS 210
Query: 153 --MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTASFEVPAVGVV 207
+++ K + N H N AFP D E KT F +
Sbjct: 211 KTILHDKESAVV--NDHAN--------------AFPIDPKDFHIEEIKTDFFTFKKQNKI 254
Query: 208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQ 267
++ +K G HN N + ++ + E + + + PHR + + D
Sbjct: 255 YRIDTPYLK--GVHNVKNIMYLLKLLEIMNCNISFEKVRNFFRNQKGIPHRFEYLSID-N 311
Query: 268 GVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--VLNGQESNGFEKLIEPLNHHR 325
+++DSKATNL +T + L L G K +L GG K L+G E+ EKLI LN
Sbjct: 312 NYIFINDSKATNLASTKSALNSLNG-KIHLLFGGDLKNQPLDGIENFFNEKLI-SLN--- 366
Query: 326 CVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEF 385
+G V+I L+N + +++ + +++ + I+LSPGCAS D F
Sbjct: 367 ---LYGKDAVIIKDYLLNKKIKFDMKCFVSLEAILESIKKIVKKDEIILLSPGCASQDMF 423
Query: 386 RNFEHRGMVFQEL 398
N++ RG F E+
Sbjct: 424 MNYQDRGNQFVEV 436
>gi|449935368|ref|ZP_21803329.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 2ST1]
gi|449967074|ref|ZP_21812605.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 15VF2]
gi|449980217|ref|ZP_21817076.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 5SM3]
gi|450071274|ref|ZP_21848066.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans M2A]
gi|450117352|ref|ZP_21864958.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans ST1]
gi|450152976|ref|ZP_21876939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 21]
gi|449166654|gb|EMB69581.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 2ST1]
gi|449169399|gb|EMB72175.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 15VF2]
gi|449177235|gb|EMB79545.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 5SM3]
gi|449212556|gb|EMC12917.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans M2A]
gi|449226351|gb|EMC25893.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans ST1]
gi|449239447|gb|EMC38169.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 21]
Length = 451
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 111/380 (29%), Positives = 188/380 (49%), Gaps = 37/380 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTEKDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q + +I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR---RMATNGDAIVL 375
+ + +I G S + V G++ N KD R + A+ D ++L
Sbjct: 367 PDIKGLKKMIILGESAPRLKHAAVQAGVT-----YLNAKDVAQATRIAFQEASPEDVVLL 421
Query: 376 SPGCASFDEFRNFEHRGMVF 395
SP AS+D ++NFE RG F
Sbjct: 422 SPANASWDMYKNFEVRGDEF 441
>gi|450000058|ref|ZP_21824903.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans N29]
gi|449186302|gb|EMB88141.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans N29]
Length = 451
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 111/380 (29%), Positives = 188/380 (49%), Gaps = 37/380 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTEKDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q + +I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR---RMATNGDAIVL 375
+ + +I G S + V G++ N KD R + A+ D ++L
Sbjct: 367 PDIKGLKKMIILGESAPRLKHAAVQAGVT-----YLNAKDVAQATRIAFQEASPEDVVLL 421
Query: 376 SPGCASFDEFRNFEHRGMVF 395
SP AS+D ++NFE RG F
Sbjct: 422 SPANASWDMYKNFEVRGDEF 441
>gi|450082579|ref|ZP_21852422.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans N66]
gi|449214297|gb|EMC14582.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans N66]
Length = 451
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 111/380 (29%), Positives = 188/380 (49%), Gaps = 37/380 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTKEDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q + +I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR---RMATNGDAIVL 375
+ + +I G S + V G++ N KD R + A+ D ++L
Sbjct: 367 PDIKGLKKMIILGESAPRLKHAAVQAGVT-----YLNAKDVAQATRIAFQEASPEDVVLL 421
Query: 376 SPGCASFDEFRNFEHRGMVF 395
SP AS+D ++NFE RG F
Sbjct: 422 SPANASWDMYKNFEVRGDEF 441
>gi|449887865|ref|ZP_21787095.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SA41]
gi|450041219|ref|ZP_21837273.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans T4]
gi|449197948|gb|EMB99084.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans T4]
gi|449251997|gb|EMC49990.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SA41]
Length = 451
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 111/380 (29%), Positives = 188/380 (49%), Gaps = 37/380 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTEKDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q + +I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR---RMATNGDAIVL 375
+ + +I G S + V G++ N KD R + A+ D ++L
Sbjct: 367 PDIKGLKKMIILGESAPRLKHAAVQAGVT-----YLNAKDVAQATRIAFQEASPEDVVLL 421
Query: 376 SPGCASFDEFRNFEHRGMVF 395
SP AS+D ++NFE RG F
Sbjct: 422 SPANASWDMYKNFEVRGDEF 441
>gi|450180681|ref|ZP_21887376.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 24]
gi|449248088|gb|EMC46351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 24]
Length = 451
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 111/380 (29%), Positives = 188/380 (49%), Gaps = 37/380 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTEKDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q + +I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
Query: 319 EPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR---RMATNGDAIVL 375
+ + +I G S + V G++ N KD R + A+ D ++L
Sbjct: 367 PDIKGLKKMIILGESAPRLKHAAVQAGVT-----YLNAKDVAQATRIAFQEASPEDVVLL 421
Query: 376 SPGCASFDEFRNFEHRGMVF 395
SP AS+D ++NFE RG F
Sbjct: 422 SPANASWDMYKNFEVRGDEF 441
>gi|422846166|ref|ZP_16892849.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis SK72]
gi|325688217|gb|EGD30236.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis SK72]
Length = 459
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 109/380 (28%), Positives = 180/380 (47%), Gaps = 39/380 (10%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A + I+ +TG+NGK+T T + Q L G + GN+G P S+ A
Sbjct: 108 VITEVELAYLI--SEAPIIGITGSNGKTTTTTMIAQALTAGGQNGLLSGNIGYPASQVAQ 165
Query: 88 HCIALPSSKPKFQVAVVEVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
SSK V+E+SS+Q M I + F P ++V+ NL P HL+ H +++ YA K
Sbjct: 166 TA----SSKDTL---VMELSSFQLMGIED--FHPQIAVITNLMPTHLDYHGSVEGYAAAK 216
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTASFEVP 202
++ +M +L F E + A + F K+D E +F
Sbjct: 217 WNIQKNMTADDYLVLNFNQDWAKEMASQTQ---ATVVPFSTTEKVDGAYLEGDVLTFRGE 273
Query: 203 AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
A+ +Q + V G HN N A+A ++V L G+D + + + HR+Q V
Sbjct: 274 AI-----MQAAEIGVPGSHNVEN-ALATIAVAKLR-GIDNQTIKEVLSAFGGVKHRLQYV 326
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322
R + V + +DSK+TN+ AT L K +++ GG + N F++L+ L
Sbjct: 327 GR-VNEVAFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELVPDLK 379
Query: 323 HHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASF 382
+ ++ G S + + G+S +++DA + A + GD ++LSP AS+
Sbjct: 380 GLKKMVILGQSAARVKRAADLAGVS--YLDATDVRDAAHKAYSQSEPGDIVLLSPANASW 437
Query: 383 DEFRNFEHRG----MVFQEL 398
D + NFE RG F+EL
Sbjct: 438 DMYSNFEVRGDEFLAAFEEL 457
>gi|29840624|ref|NP_829730.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
caviae GPIC]
gi|33301359|sp|Q821S1.1|MURD_CHLCV RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|29834974|gb|AAP05608.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
caviae GPIC]
Length = 419
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/358 (27%), Positives = 177/358 (49%), Gaps = 57/358 (15%)
Query: 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
+ +TG+ GK+T V F+ +L +G+ AF GN+G P+ +A + + VVE
Sbjct: 105 IGITGSAGKTTTVLFLVHLLRSMGMGAFAMGNIGVPILQAM----------REKGIRVVE 154
Query: 106 VSSYQMEIPNKYFCPTVS--VVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+SS+Q+ + P +S +LN++ +HL+ H++++NY+ K ++ + +
Sbjct: 155 ISSFQL-TEQEIETPVLSGAAILNISENHLDYHQSLQNYSEAKRNITKCLQSV------- 206
Query: 164 GNQHLNEAIKGHRFNLAWIGAF--PGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRH 221
E++ W+G + PG K + + + L LH+ R
Sbjct: 207 ------ESL--------WVGEWLSPGKSYLDYTKEIASVLDKGSALKPLYLHD-----RS 247
Query: 222 NYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE 281
NY AA ++ V +EA ++ PPHR++ + GV++++DSKAT +
Sbjct: 248 NY----CAAYALANEISNVPLEAFLQALQTFEKPPHRIEYLGEK-DGVSYINDSKATTMS 302
Query: 282 ATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKT 340
+ L+ +K +++LGG+ K + F LI L + ++ G I +
Sbjct: 303 SVEKALIAVK-ENVIVILGGRNK------GSDFTSLIPILTQTVKHIVAMGECRNEIAQA 355
Query: 341 LVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
L S+P ++++AV+ A+ +A GD I+LSPGCASFD+FR+FE RG F++L
Sbjct: 356 LSG---SLPLTQARDLQEAVSMAQSIAQPGDVILLSPGCASFDQFRSFEERGDCFRQL 410
>gi|421452176|ref|ZP_15901537.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
salivarius K12]
gi|400182607|gb|EJO16869.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
salivarius K12]
Length = 450
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 113/385 (29%), Positives = 181/385 (47%), Gaps = 39/385 (10%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+A L+ G V +E++ A V I+ +TG+NGK+T T + +LNH G + GN
Sbjct: 89 VARALEKGIPVWTEVELAYLV--SEAPIIGITGSNGKTTTTTMIADVLNHGGKSGVLSGN 146
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P SE A S V+E+SS+Q+ + F P ++V+ NL P H++ H
Sbjct: 147 IGFPASEVA-------QSVTNQDTLVMELSSFQL-MGIDSFHPHIAVITNLMPTHIDYHG 198
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKT 196
+ + Y K ++ + M +L F NQ L + + A + F V K+D
Sbjct: 199 SFEAYVAAKWNIQNQMTVDDFVVLNF-NQDLAKELATQ--TKAQVVPFSTVEKVD----G 251
Query: 197 ASFEVPAVGVVSQLQLH--NMKVMGRHNYHNA----AVAALSVLGLDIGVDVEALNSTIE 250
A E A+ +L + + V G HN NA AVA LS G+ +A+ T+
Sbjct: 252 AYLENGALYFKGELVMRADEIGVPGSHNVENALATIAVAKLS------GISNQAIKETLA 305
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
HR+Q V I V + +DSK+TN+ AT L K +++ GG +
Sbjct: 306 SFGGVKHRLQFVDT-IDEVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------ 358
Query: 311 SNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 370
N F++LI + + ++ G S + + G++ ++ DA A A+ G
Sbjct: 359 GNEFDELIPDITGLKKMVILGESAPRVKRAADKAGVT--YLDAKDVADATRIAFDQASAG 416
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVF 395
D ++LSP AS+D ++NFE RG F
Sbjct: 417 DVVLLSPANASWDMYKNFEVRGDEF 441
>gi|406947068|gb|EKD78075.1| hypothetical protein ACD_42C00053G0003 [uncultured bacterium]
Length = 451
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 110/367 (29%), Positives = 181/367 (49%), Gaps = 56/367 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKST+ +G+++ + G +A V GN+G P+ +A + P F V V
Sbjct: 110 IVAITGSNGKSTLTVLMGELIKNAGKKAIVCGNIGLPVLDALMQPV------PDFYV--V 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTK--- 157
E+SS+Q++ + TV+VV+N++PDH++R+ T+ +Y +K ++ + +VN
Sbjct: 162 ELSSFQLDTTHS-LTATVAVVINVSPDHMDRYATVDDYRQSKQKIYLNCEHAVVNADEPE 220
Query: 158 -LGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
L F N L ++ N W G G + + K S V+ L L
Sbjct: 221 IWNSLQFKNLPLEFTLQKPHQN-QW-GLCDGFLVRGDKKVIS--------VTDLLLQQ-- 268
Query: 217 VMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQIVHRDIQGVTW 271
RHN N AA+A S+L L + +E+LR+ HR Q+V + I V W
Sbjct: 269 ---RHNNQNFLAALAMGSILKL-------PMEKMLEVLRSFSGLEHRCQLVKK-INEVAW 317
Query: 272 VDDSKATNLEATCTGLMDLKGHKC---VILLGGQAKVLNGQESNGFEKLIEPLNHHRCVI 328
+DSKATN+ A + + C ++L GG +K G + I H V
Sbjct: 318 YNDSKATNVGAAIAAIESMGQSLCGNLILLAGGDSK---GVSLTPLQNPIRQYVSH--VF 372
Query: 329 TFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 388
+G L+ L +G ++ V +++AV A+++A GD ++L+P CAS D++ N+
Sbjct: 373 LYGKDADLLENAL--HGCAV-VTRVTCLREAVTEAQKIAKRGDVVLLAPACASLDQYENY 429
Query: 389 EHRGMVF 395
RG F
Sbjct: 430 AERGRDF 436
>gi|410030909|ref|ZP_11280739.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinilabilia sp.
AK2]
Length = 450
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 109/382 (28%), Positives = 182/382 (47%), Gaps = 33/382 (8%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+ G V+ EL+FA + K++A+TGTNGK+T +L G++ + GN+G
Sbjct: 84 FEKGLPVIDELEFAFRF--SKGKVIAITGTNGKTTTALLTYHLLKKGGLDVGLAGNVGKS 141
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMK 140
A + V+EVSS+Q++ K+F P ++++ N+TPDHL+R+ +
Sbjct: 142 W---AGQLVG-----QDHDWWVLEVSSFQID-GFKHFKPCIAMLTNITPDHLDRYGYQLD 192
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF- 199
NY L+K LF +M + ++ + NE I F + +P V + T K +
Sbjct: 193 NYILSKMSLFQNMDLDQAAIINADDLLTNEGI---SFKPLTMDCYP-VSLKTSQKQGGYF 248
Query: 200 -----EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
++ A G + + + G+HN N+ +A L + GV+ +A+ ++ +
Sbjct: 249 DGLNLDMIAKGKKISISHQEVILKGKHNMLNSMMATLGAIL--AGVEEKAIREGLQDFKN 306
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGF 314
HRM+ V I GV +V+DSK TN++AT L D + + GG V G + +
Sbjct: 307 AAHRMEAVAT-IHGVAFVNDSKGTNVDATAYAL-DSYQQPLIWIAGG---VDKGNDYSVL 361
Query: 315 EKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 374
+ LI+ + +I G + K I ++ AV A GD ++
Sbjct: 362 DPLIK--GKVKMLICLGVDNEKLKKAFEGKIKQIK--ETKDIHQAVQWALENGQAGDLVL 417
Query: 375 LSPGCASFDEFRNFEHRGMVFQ 396
LSP CASFD F+N+E RG F+
Sbjct: 418 LSPACASFDLFKNYEDRGEQFK 439
>gi|390954610|ref|YP_006418368.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aequorivita
sublithincola DSM 14238]
gi|390420596|gb|AFL81353.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aequorivita
sublithincola DSM 14238]
Length = 445
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 108/392 (27%), Positives = 190/392 (48%), Gaps = 35/392 (8%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G +V+SE++FAA+ +I + +TG+NGK+T + ++L + G+
Sbjct: 76 KAPIVKKLHEKGVKVISEIEFAAKFTKATI--VGITGSNGKTTTASLTYELLKYGGLNVA 133
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHL 133
+GGN+G +E S+ K++ V+E+SS+Q++ + F P ++V+ NL+PDHL
Sbjct: 134 LGGNIGKSFAEQV--------SEEKYENFVLELSSFQLD-GIETFSPHIAVLTNLSPDHL 184
Query: 134 ERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT 192
+R+ +NY +K + M T + + E IK N P +
Sbjct: 185 DRYDYKYENYIASKFRI--TMNQTSQDYFIYDADDV-EIIKWLSQNPIKAQPLP-FSVKK 240
Query: 193 EAKTASFEVPAVGVVS------QLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
E +F+ ++ + + + + G HN NA A S + + + + +
Sbjct: 241 ELNQGAFKRNNEIIIKINNKEFNMPIATIGIQGEHNVKNAMAA--STIATLLRIRKQTIR 298
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVL 306
++E + HR++ V + I V +++DSKATN+ AT L D + V ++GG K
Sbjct: 299 ESLEGFQGVEHRLEKVLK-IHNVMYINDSKATNVNATYFAL-DSMENPTVWIVGGVDK-- 354
Query: 307 NGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR 365
N + +L+ +N + +I G I N +I +M AV A +
Sbjct: 355 ----GNDYSELLPLVNEKVKAIICLGVDNQKIINAFGNVVETI--IETDSMAMAVQVAYK 408
Query: 366 MATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
+ N + ++LSP CASFD F N+E RG F+E
Sbjct: 409 LVENNNTVLLSPACASFDLFENYEDRGRQFKE 440
>gi|335043625|ref|ZP_08536652.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Methylophaga
aminisulfidivorans MP]
gi|333790239|gb|EGL56121.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Methylophaga
aminisulfidivorans MP]
Length = 451
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 107/380 (28%), Positives = 183/380 (48%), Gaps = 34/380 (8%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q+G ++ +++ A+ ++A+TG+NGKSTV T + M G GGNLG P
Sbjct: 94 QAGIEIVGDIELFARYA--DAPVVAITGSNGKSTVTTLLALMAQVSGKIVRAGGNLGTPA 151
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ L S P F ++E+SS+Q+E + +VVLN++PDH++R+ +++ Y
Sbjct: 152 LD------LLEESAPDFY--ILELSSFQLETV-RSLNAFAAVVLNVSPDHMDRYDSLEAY 202
Query: 143 ALTKCHLFS----HMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
K +F+ ++N ++ Q I G + F ++ D + A
Sbjct: 203 QRAKQTIFNGDGVMVINQDDPIVNDMRQSGRNTI-GFSLKQSHGVDFGLMEADGQTWLAE 261
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
E P L + MK++G HN NA A + + + ++ S + + PHR
Sbjct: 262 GEYPL------LPVEQMKIVGSHNIANALAALALGSAM--ALPMSSMLSALREYKGLPHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
++V R + G+ W +DSKATN+ A + L G +IL+ G G++ + F +L
Sbjct: 314 CRLV-RQLNGIRWFNDSKATNVGACVAAINGLAGSGNIILIAGGV----GKDQD-FSELT 367
Query: 319 EPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377
L + V+ G I K + + ++M DAV A+ +A+ GD ++LSP
Sbjct: 368 SALKQSVKAVVLMGVDADKIAKVIPP---GVEQIQASDMADAVKIAQSIASEGDNVLLSP 424
Query: 378 GCASFDEFRNFEHRGMVFQE 397
CASFD F ++ RG F++
Sbjct: 425 ACASFDMFSSYADRGNSFEQ 444
>gi|406659206|ref|ZP_11067344.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
iniae 9117]
gi|405577315|gb|EKB51463.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
iniae 9117]
Length = 452
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 105/371 (28%), Positives = 174/371 (46%), Gaps = 31/371 (8%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
+++E++ A V I+A+TG+NGK+T T + +L H G A + GN+G P SE A
Sbjct: 99 ILTEVELAYLV--SEAPIIAITGSNGKTTTTTMIADILKHGGQSALLSGNIGFPASEVA- 155
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
IA SS V+E+SS+Q+ + + F P ++++ NL P HL+ H T + Y K
Sbjct: 156 --IAAESS----DTLVMELSSFQL-MGVQAFHPHIALITNLMPSHLDYHGTFQEYVAAKW 208
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
++ ++M +L E + R + + TE ++
Sbjct: 209 NVQNNMTPEDFVILNANQAISKELAQNTRAQVIYFST-------TEKINGAYLFEGKLYY 261
Query: 208 SQ---LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+ + V G HN N A+AA+SV L G+ + + +I HR+Q V
Sbjct: 262 QGDYIMDADQIGVPGSHNIEN-ALAAISVAKLS-GLSNQVIAESISRFSGVKHRLQFVGA 319
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH 324
I GV + +DSK+TN+ A L +++ GG + N F++L+ +
Sbjct: 320 -IDGVRFYNDSKSTNILACQKALSGFANEHLILIAGGLDR------GNEFDELVPDIVGL 372
Query: 325 RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 384
+ +I G S + G++ C ++ DA A+ +A GD I+LSP AS+D
Sbjct: 373 KKMIVLGESAEKMKAAAEKAGVT--CLKAKDVADATRMAKEVAQAGDTILLSPANASWDM 430
Query: 385 FRNFEHRGMVF 395
++NFE RG F
Sbjct: 431 YKNFEIRGEEF 441
>gi|259047014|ref|ZP_05737415.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Granulicatella
adiacens ATCC 49175]
gi|259036333|gb|EEW37588.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Granulicatella
adiacens ATCC 49175]
Length = 452
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 113/391 (28%), Positives = 184/391 (47%), Gaps = 43/391 (10%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE--AFVG 75
+A + G V +E++ A +V+ ++ L +TG+NGK+T T ML+ E F
Sbjct: 89 VAKAVDKGLPVYTEIEIAQRVMEGTV--LGITGSNGKTTTTTLTNLMLHESFPERRTFAC 146
Query: 76 GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLER 135
GN+G PLS+ L + + V E+SS+Q+ + + F P V+ ++N+ HL+
Sbjct: 147 GNIGVPLSQ-------LAEDSKETDIYVTELSSFQL-MGIEAFRPKVACIVNIFSAHLDY 198
Query: 136 HKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH---------RFNLAWIGAFP 186
H + + Y K + + + L E IKGH R ++ GA+
Sbjct: 199 HGSREEYVKAKLQITKNQTEEDFLVYNADFPELYEFIKGHTKATLVPFSRKSVLEHGAY- 257
Query: 187 GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
T+ + F AV + + ++V G N N +AA+++ L G E +
Sbjct: 258 -----TDETSIYFNGEAV-----MPIEAIQVPGVQNVENV-LAAVAICKLQ-GATNEGIE 305
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVL 306
+ HR Q V + I+G + +DSKATN+ AT T L V++ GG +
Sbjct: 306 KAVRSFHGVKHRTQYV-KTIEGRKFYNDSKATNIIATQTALRSFTNQSVVLIAGGLDR-- 362
Query: 307 NGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRM 366
NGFE+L L + R ++ +G + + T LSIP V +++AV A
Sbjct: 363 ----GNGFEELESSLGNVREMVVYGETKEKLKATA--EKLSIPVTVVETLEEAVPKAYAA 416
Query: 367 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
+ G+ ++LSP CAS+D+F NFE RG F E
Sbjct: 417 SREGEIVLLSPACASWDQFANFEVRGDCFIE 447
>gi|218131850|ref|ZP_03460654.1| hypothetical protein BACEGG_03472 [Bacteroides eggerthii DSM 20697]
gi|217986153|gb|EEC52492.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
eggerthii DSM 20697]
Length = 444
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/387 (26%), Positives = 187/387 (48%), Gaps = 39/387 (10%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+GN
Sbjct: 82 LKEKGIPIISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGN 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL + K V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAMEKHDYYVIELSSFQLD--NMYKFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+ Y K + + + P + L + +K H + A + G E
Sbjct: 190 MQKYVDAKFRITQNQTPEDAFIYWNDDPIIRRELEKHGLKAHPYPFAAVKE-DGAIAYVE 248
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTIEIL 252
P + ++ + + G HN +N+ A +S L G+ E + +
Sbjct: 249 DGEVEINEP---IAFNMEQEELALHGTHNLYNSLAAGISANLA---GIKKEDIRKALSDF 302
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
+ HR++ V ++G+ +++DSKATN+ + L + K V++LGG+ K G +
Sbjct: 303 KGVEHRLEKVAT-VRGIQFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK---GNDYT 357
Query: 313 GFEKLIEPLNHHRC--VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 370
E+L+ +C ++ G + + GL + MKDAV A ++A G
Sbjct: 358 EIEELVRT----KCSALVYLGLHNEKLHEFFDRFGLPVADVQTG-MKDAVEAAFQLAKKG 412
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVFQE 397
+ ++LSP CASFD F+++E RG F++
Sbjct: 413 ETVLLSPCCASFDLFKSYEDRGDQFKK 439
>gi|374340110|ref|YP_005096846.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinitoga
piezophila KA3]
gi|372101644|gb|AEX85548.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinitoga
piezophila KA3]
Length = 432
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 115/385 (29%), Positives = 179/385 (46%), Gaps = 46/385 (11%)
Query: 20 CLLQSGKRVMSELDFAAQVI----PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVG 75
L S ++ +E++FA I P ++ + VTGTNGKST G +L+ FV
Sbjct: 79 ILKTSNIKISTEIEFAWNYIKKHNPEAV-FVGVTGTNGKSTTTQLTGHILSST-YNTFVC 136
Query: 76 GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLER 135
GN+G PLS A P K ++ VVEVSS+Q+ F P +SV+LNL PDHL
Sbjct: 137 GNIGTPLSSA-------PLDK---EIYVVEVSSFQL-FWGSTFTPEISVLLNLMPDHLNW 185
Query: 136 HKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAK 195
H +++ Y TK ++ V + G +N ++G+ NL I F G + K
Sbjct: 186 HSSLEEYYNTKINMVKRTV------MGNGMAFVNANLRGYFDNLQRIVLF-GENGNIVWK 238
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTIEILRT 254
E + + ++N+ + Y +AA+ V L LDI +V + I +T
Sbjct: 239 NNMIEAGNIVI----NINNLSLQFEL-YQEDVMAAVGVALNLDISKNV--IEEFISTFKT 291
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGF 314
HR++ + + G+ + +DSKATN A + + + +L G K +
Sbjct: 292 LEHRLEFIE-EYNGIRFFNDSKATNAHAAYSAYKSFRNKGYIAMLSGIPK------NEDM 344
Query: 315 EKLIEPLNHH-RCVITFGYSGVLIWK-TLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 372
L++ L + + I FG I K NN + F + A A A GD+
Sbjct: 345 TMLLQELQKYAKKTIVFGKMVDEIKKYEFFNNYIITDTF-----EKAFELALEWAERGDS 399
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQE 397
++LSP ASFD F N++ RG +F+E
Sbjct: 400 VILSPAGASFDLFENYKERGRIFKE 424
>gi|269960239|ref|ZP_06174614.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio harveyi
1DA3]
gi|269835046|gb|EEZ89130.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio harveyi
1DA3]
Length = 437
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 113/388 (29%), Positives = 177/388 (45%), Gaps = 45/388 (11%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ ++ G V+ +++ A + + + +A+TG+NGKSTV G + G+ VGGN
Sbjct: 85 IQTIIAKGTPVVGDIELFAWAVDKPV--IAITGSNGKSTVTDLTGVLAKAAGLTVGVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P AL + + V+E+SS+Q+E + LNL+ DH++R+
Sbjct: 143 IGVP---------ALDLLEQDADLYVLELSSFQLET-TASLKLKAAAFLNLSEDHMDRYD 192
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP---GVKIDTEA 194
M +Y K +F NT+L ++ N+ E L G+ G+++D
Sbjct: 193 GMADYRQAKLRIFD---NTELAVV---NRDDRETFPETETPLVTFGSDEQAYGLEVDGN- 245
Query: 195 KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAV--AALSVLGLDIGVDVEALNSTIEIL 252
+T + + S +K++G+HN NA V A L G+D + AL + +
Sbjct: 246 RTWLLDHGQRVIASD----ELKLVGKHNLANALVVLALLKAAGVDYHKSLNALKTYTGL- 300
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILLGGQAKVLNGQES 311
HR Q+V D +GV WV+DSKATN+ +T L L+ K +L+GG K G +
Sbjct: 301 ---THRCQVV-ADNRGVKWVNDSKATNIASTMAALSGLESTGKLYLLVGGVGK---GADF 353
Query: 312 NGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD 371
+ + LN C FG G L M+D + GD
Sbjct: 354 TPLKPIFATLNLQLCC--FGADGDEFMP------LHESATRFDTMEDVIQQISSQLKTGD 405
Query: 372 AIVLSPGCASFDEFRNFEHRGMVFQELA 399
++LSP CASFD+F NF RG F LA
Sbjct: 406 MVMLSPACASFDQFDNFMARGDAFAALA 433
>gi|422883602|ref|ZP_16930051.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis SK49]
gi|332362875|gb|EGJ40668.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis SK49]
Length = 459
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 107/379 (28%), Positives = 181/379 (47%), Gaps = 37/379 (9%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A + I+ +TG+NGK+T T + Q+L G + GN+G P S+ A
Sbjct: 108 VITEVELAYLI--SEAPIVGITGSNGKTTTTTMIAQVLTAGGQNGLLSGNIGFPASQVAQ 165
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
SSK V+E+SS+Q+ + + P ++V+ NL P HL+ H ++++YA K
Sbjct: 166 TA----SSKDTL---VMELSSFQL-MGIEALHPQIAVITNLMPTHLDYHGSLEDYAAAKW 217
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTASFEVPA 203
++ +M +L F E + A + F K+D E +F A
Sbjct: 218 NIQKNMTADDYLVLNFNQDWAKEMASQTQ---ATVMPFSTTEKVDGAYLEGDVLTFRGEA 274
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
+ +Q + V G HN N A+A ++V L G+D + + + HR+Q V
Sbjct: 275 I-----MQAAEIGVPGSHNVEN-ALATIAVAKLR-GIDNQTIKEVLSAFGGVKHRLQYVG 327
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
R + V + +DSK+TN+ AT L K +++ GG + N F++L+ L
Sbjct: 328 R-VNEVAFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELVPDLKG 380
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 383
+ ++ G S + + G+S +++DA + A A GD ++LSP AS+D
Sbjct: 381 LKKMVILGQSAPRVKRAADQAGVS--YLDATDVQDAAHKAFAQAEPGDIVLLSPANASWD 438
Query: 384 EFRNFEHRG----MVFQEL 398
+ NFE RG F+EL
Sbjct: 439 MYSNFEVRGDEFLAAFEEL 457
>gi|422876964|ref|ZP_16923434.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis SK1056]
gi|332361772|gb|EGJ39576.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis SK1056]
Length = 459
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 107/378 (28%), Positives = 179/378 (47%), Gaps = 35/378 (9%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A + I+ +TG+NGK+T T + Q+L G + GN+G P S+ A
Sbjct: 108 VITEVELAYLI--SEAPIIGITGSNGKTTTTTMIAQVLTAGGQNGLLSGNIGFPASQVAQ 165
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
SSK V+E+SS+Q+ + + F P ++V+ NL P HL+ H +++ YA K
Sbjct: 166 TA----SSKDTL---VMELSSFQL-MGIEAFHPQIAVITNLMPTHLDYHGSVEEYAAAKW 217
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTASFEVPAV 204
++ +M +L F E + A + K+D E +F A+
Sbjct: 218 NIQKNMTADDYLVLNFNQDWAKEM--ASQTQAAVVPFSTTEKVDGAYLEGDVLTFRGEAI 275
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+Q + V G HN N A+A ++V L G+D + + + HR+Q V R
Sbjct: 276 -----MQAAEIGVPGSHNVEN-ALATIAVAKLR-GIDNQTIKEVLSAFGGVKHRLQYVGR 328
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH 324
+ V + +DSK+TN+ AT L K +++ GG + N F++L+ L
Sbjct: 329 -VNEVAFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELVPDLKGL 381
Query: 325 RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 384
+ ++ G S + + G+S ++ DA + A A GD ++LSP AS+D
Sbjct: 382 KKMVILGQSAPRVKRAADQAGVS--YLDATDVWDAAHKAFAQAEPGDIVLLSPANASWDM 439
Query: 385 FRNFEHRG----MVFQEL 398
+ NFE RG F+EL
Sbjct: 440 YSNFEVRGDEFLAAFEEL 457
>gi|304396561|ref|ZP_07378442.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pantoea sp. aB]
gi|440760743|ref|ZP_20939846.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pantoea
agglomerans 299R]
gi|304356070|gb|EFM20436.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pantoea sp. aB]
gi|436425496|gb|ELP23230.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pantoea
agglomerans 299R]
Length = 438
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 114/363 (31%), Positives = 169/363 (46%), Gaps = 43/363 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + VGGN+G P A + P+ Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGLP----ALSLLQSPA-----QLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + VLN++ DH++R+ M+ Y K ++ N ++ ++
Sbjct: 158 ELSSFQLET-TYSLKAAAATVLNVSEDHMDRYPLGMQQYRAAKLRVYE---NAQICIVN- 212
Query: 164 GNQHLNEAIKGHRFNLAWIGA-FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ L ++G G F ++ + + V V L MK++G+HN
Sbjct: 213 ADDALTMPVRGADTRCVSFGVDFGDYHLNKQQGSIWLRVKGEKV---LNTAEMKMVGQHN 269
Query: 223 YHNAAVAALSV--LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
Y NA A +GL + AL HR Q+VH QGV W++DSKATN+
Sbjct: 270 YTNALAALALADAVGLPRASSLAALTH----FNGLAHRFQLVHEH-QGVRWINDSKATNV 324
Query: 281 EATCTGLMDLKGHKCV-ILLGGQAKVLNGQESNGFEKLIEPLNHHRC-VITFGYSGVLIW 338
+T L L+ + +L+GG K S F LI L + FG G +
Sbjct: 325 GSTEAALNGLQVQGTLWLLMGGDGK------SADFTPLIPWLQGDNVRLYCFGRDGDALA 378
Query: 339 KTLVNNGLSIPCFAV--ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
P AV M+ A+ GD ++LSP CAS D+FRNFE RG F
Sbjct: 379 ALR-------PDIAVRTETMRQAMEQIAPQVNAGDMVLLSPACASLDQFRNFEQRGEQFA 431
Query: 397 ELA 399
+LA
Sbjct: 432 QLA 434
>gi|402494448|ref|ZP_10841189.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aquimarina
agarilytica ZC1]
Length = 451
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 106/381 (27%), Positives = 186/381 (48%), Gaps = 42/381 (11%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF-VGGNLGNPLSEAA 86
V+SE++FA + S+ + +TG+NGK+T G +L+ G+E + GN+G+ ++A
Sbjct: 95 VISEIEFAVKYTKASV--VGITGSNGKTTTTMLTGHVLSS-GMEGVTMAGNIGDSFAKAV 151
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALT 145
L F V+E+SS+Q++ FCP ++++ NL+PDHL+R++ + Y
Sbjct: 152 -----LDDQTNTF---VLELSSFQLDGVED-FCPKIAILTNLSPDHLDRYEYSYDKYIAA 202
Query: 146 KCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP---------GVKIDTEAKT 196
K L + + + ++ + +K H+ FP GV I
Sbjct: 203 KFRLIKNQTHNDYFIYDADDKDIQNYLKKHK---PKAQCFPFSLEKELEQGVFIKNNHIV 259
Query: 197 ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
S ++S+ ++ + GRHN NA AA+S IG+ + + ++ +
Sbjct: 260 ISMNNEQDIIISE---SSLSLKGRHNTKNAMAAAMSARL--IGIRKQTIRESLTNFQGVE 314
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK 316
HR+++V + I V +++DSKATN+ AT L +K V ++GG K N + +
Sbjct: 315 HRLEMVLK-INNVQYINDSKATNVNATYFALEAVKT-PVVWIVGGVDK------GNDYSE 366
Query: 317 LIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
L + +N + +I G I + N +I +M++AV A + D ++L
Sbjct: 367 LYKLVNEKVKAIICLGVDNSRIVASFENCVDTI--VETQSMQEAVKIAYALGERNDTVLL 424
Query: 376 SPGCASFDEFRNFEHRGMVFQ 396
SP CASFD F+N+E RG F+
Sbjct: 425 SPCCASFDLFKNYEDRGDQFK 445
>gi|90407782|ref|ZP_01215960.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Psychromonas
sp. CNPT3]
gi|90311142|gb|EAS39249.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Psychromonas
sp. CNPT3]
Length = 445
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 105/384 (27%), Positives = 181/384 (47%), Gaps = 40/384 (10%)
Query: 23 QSGKRVMSELDFAAQVIPRS----IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL 78
+G ++ +++ A+V+ K++ +TG+NGK+TV + +G+M + + +GGN+
Sbjct: 84 DAGCELIGDIELFARVLKTPSYAHAKVVTITGSNGKTTVTSLLGEMASASPLNVAIGGNI 143
Query: 79 GNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT 138
G P AL P + ++E+SS+Q+E ++ +LN++ DHL+R+++
Sbjct: 144 GTP---------ALDLLDPNINLYILELSSFQLETTTS-LNADIATILNISADHLDRYRS 193
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+Y +K ++ + + L+ A+ F A F VK + E
Sbjct: 194 YDHYIQSKHIIYQQCKKALFNIEDAQTKPLSCALDQICFG-AENADFQLVKQNNET---- 248
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
++G + L + +K+ GRHN+ NA A G +G+D + + +E + HR
Sbjct: 249 --FISMGSETLLNVKKLKLSGRHNWMNALAALAL--GDAVGLDKNIMLAVLENYQGLEHR 304
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFE 315
+ V + + GV W++DSK TN+ AT LM L K ++LGGQ K + F
Sbjct: 305 CEFVAQ-VHGVRWINDSKGTNVGATQAALMGLSQSISGKVHVILGGQGKGAD------FS 357
Query: 316 KLIEPLNH-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 374
L N + FG LI + V ++ AV A + AT GD ++
Sbjct: 358 LLRPVFNEVQGDIFCFGEDAALIAS------VDPRIQRVDDLAQAVCLAEQAATAGDIVM 411
Query: 375 LSPGCASFDEFRNFEHRGMVFQEL 398
SP CAS D ++NF RG F+ L
Sbjct: 412 FSPACASLDMYKNFMQRGDHFKTL 435
>gi|253580162|ref|ZP_04857429.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848681|gb|EES76644.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 451
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 110/390 (28%), Positives = 197/390 (50%), Gaps = 39/390 (10%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ + G V E++ A +V ++LA+TGTNGK+T +G+++ FV GN
Sbjct: 86 VKSFYEQGLPVWGEVELAYRV--GDGEVLAITGTNGKTTTTALLGKIMQDARESVFVVGN 143
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P + A KP + V E+SS+Q+E ++ F P VS +LN+T DHL RH
Sbjct: 144 IGTPYTSKALEM------KPN-SITVAEISSFQLETIDE-FAPKVSAILNITEDHLNRHH 195
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA----FPGVKIDTE 193
TM+ Y K + + + +L + ++ L E K + + + G+ +D
Sbjct: 196 TMEEYIRVKELITENQGTEDVCVLNYEDEVLREFGKHLTPRVVYFSSGRKLDEGIYLDGN 255
Query: 194 A---KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
K E+ V + ++K++G+HN+ N +AA+++ D GV ++++ +I
Sbjct: 256 KIILKDGEKEIEVV------KTEDLKLLGKHNFENV-MAAVAMAYYD-GVSLDSIRKSIC 307
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
HR++ V + +GV + +DSK TN +A G+ + ++ +L+GG +
Sbjct: 308 EFTAVAHRIEYV-TEKKGVVYYNDSKGTNPDAAIKGIQAM--NRPTLLIGG-----GYDK 359
Query: 311 SNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLS--IPCFAVANMKDAVNHARRMA 367
+G+++ IE + R ++ G + I + +G I C ++K+AV A
Sbjct: 360 QSGYDEWIEAFDGKVRYLVLIGQTKEKIKEAAEKHGFHDIILC---EDLKEAVKVCEEKA 416
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
GDA++LSP CAS+ +F N+E RG +F+E
Sbjct: 417 QPGDAVLLSPACASWGQFDNYEQRGDMFKE 446
>gi|329298857|ref|ZP_08256193.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Plautia stali
symbiont]
Length = 439
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 178/383 (46%), Gaps = 82/383 (21%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + VGGN+G P + L S + V V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMARAAGWQVGVGGNIGLP-------ALTLLKSPAQLYV-VL 158
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E + +LN+T DH++R+ M+ Y K ++ + +VN G
Sbjct: 159 ELSSFQLET-TYSLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENADICVVNADDG 217
Query: 160 L---------------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+ + G+ HLN+ + W+ G K+
Sbjct: 218 MTMPVRGADRRCVSFGIDVGDYHLNQ-----QQGSTWL-RVKGEKV-------------- 257
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP---PHRMQI 261
L MK++G+HNY NA A ++I L S+++ L T PHR Q+
Sbjct: 258 -----LNTDEMKLVGQHNYTNALAALALADAVNI-----PLASSLKALTTYSGLPHRFQL 307
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKVLNGQESNGFEKLIEP 320
VH + GV W++DSKATN+ +T L L+ + +LLGG K G + + ++
Sbjct: 308 VH-EAHGVRWINDSKATNVGSTEAALNGLQVKGTLWLLLGGDGK---GADFTPLARYLQG 363
Query: 321 LNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHA-RRMATN---GDAIVLS 376
N + FG G + L+ AVA D + ++A GD ++LS
Sbjct: 364 DNVR--LFCFGRHG---------DALAALRPAVATCTDTLEQGMTQIAAQVQAGDMVLLS 412
Query: 377 PGCASFDEFRNFEHRGMVFQELA 399
P CAS D+FRNFE RG F +LA
Sbjct: 413 PACASLDQFRNFEQRGDRFAQLA 435
>gi|229019116|ref|ZP_04175950.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
AH1273]
gi|229025359|ref|ZP_04181777.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
AH1272]
gi|228735944|gb|EEL86521.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
AH1272]
gi|228742132|gb|EEL92298.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
AH1273]
Length = 450
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 106/372 (28%), Positives = 175/372 (47%), Gaps = 32/372 (8%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
+++E++ A ++ + +TG+NGK+T +ML + GN+G E A
Sbjct: 99 IVTEVELAYRI--SEAPFVGITGSNGKTTTTMLAFEMLKEGKKHPVIAGNIGTVACEVA- 155
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ +V V E+SS+Q+ + + F P ++ LNL HL+ H T + Y L K
Sbjct: 156 ------QDAKENEVVVTELSSFQL-MGVEMFQPKIAAFLNLFEAHLDYHGTKEEYGLAKA 208
Query: 148 HLFSHMVNTKLGLLPFGNQH---LNEAIKGHRFNLAWIGAFP-GVKIDTEAKTASFEVPA 203
++F + T ++ + L+ KG + + G I A F+
Sbjct: 209 NIFKNQTETDYSVINADDADVMTLSAQSKGQKVLFSTTKEIEDGAYIKENA--LYFKGEK 266
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
V VS + L G+HN N +AA+S+ L +GV EA+ ++ HR++ V
Sbjct: 267 VAEVSDIVLP-----GKHNLENI-LAAMSIAKL-LGVSNEAITVVLKSFTGVKHRLEYV- 318
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
I + +DSKATN+ AT L V+L GG + N F+ LI H
Sbjct: 319 TTINNRKFYNDSKATNMLATEKALSAFT-QPIVLLAGGLDR------GNEFDDLIPYFKH 371
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 383
+ ++TFG + + + GL + +V + +AV A +T+GD I+LSP CAS+D
Sbjct: 372 VKAIVTFGQTAPKLVRAAEKAGLDV-IESVDTLGEAVVKAYAHSTDGDVILLSPACASWD 430
Query: 384 EFRNFEHRGMVF 395
+F+ FE RG +F
Sbjct: 431 QFKTFEERGDIF 442
>gi|343524421|ref|ZP_08761379.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
constellatus subsp. pharyngis SK1060 = CCUG 46377]
gi|343398070|gb|EGV10603.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
constellatus subsp. pharyngis SK1060 = CCUG 46377]
Length = 450
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 109/389 (28%), Positives = 187/389 (48%), Gaps = 37/389 (9%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+A L+ V++E++ A + I+ +TG+NGK+T T + ++L G + GN
Sbjct: 89 VARALEKKIPVITEVELAYLI--SDAPIIGITGSNGKTTTTTMIAEVLTAGGQNGLLSGN 146
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P S+ A ++ K V+E+SS+Q+ + + F P ++V+ NL P H++ H
Sbjct: 147 IGFPASQVA-------TTATKNDTLVMELSSFQL-MGIETFHPKIAVITNLMPTHIDYHG 198
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KIDT---E 193
+ + Y K ++ +M + +L F NQ L + + A + F K+D E
Sbjct: 199 SFEEYVAAKWNIQKNMSKSDFLVLNF-NQTLAKELAAK--TQATVVPFSTTEKVDGAYLE 255
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
+F V +L V G HN NA +A ++V L G++ + + T+
Sbjct: 256 GNMLTFRGEPVMAADEL-----GVPGSHNVENA-LATIAVAKLR-GIENQVIKETLAGFG 308
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
HR+Q V +I V + +DSK+TN+ AT L K +++ GG + N
Sbjct: 309 GVKHRLQYVG-EINHVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNE 361
Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
F++L+ + + ++ G S + + G+S C A++KDA A A GD +
Sbjct: 362 FDELVPDIQGLKKMVILGESAARVKRAADKAGVS--CMDAADVKDATQKAFAEAQAGDIV 419
Query: 374 VLSPGCASFDEFRNFEHRG----MVFQEL 398
+LSP AS+D + NFE RG F+EL
Sbjct: 420 LLSPANASWDMYPNFEVRGDEFIATFEEL 448
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,266,298,453
Number of Sequences: 23463169
Number of extensions: 251787297
Number of successful extensions: 583315
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4015
Number of HSP's successfully gapped in prelim test: 7524
Number of HSP's that attempted gapping in prelim test: 559163
Number of HSP's gapped (non-prelim): 14828
length of query: 402
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 257
effective length of database: 8,957,035,862
effective search space: 2301958216534
effective search space used: 2301958216534
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 78 (34.7 bits)