Query 015701
Match_columns 402
No_of_seqs 190 out of 1453
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 08:46:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015701.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015701hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01087 murD UDP-N-acetylmur 100.0 1.8E-66 4E-71 517.8 42.1 368 3-400 64-432 (433)
2 PRK01368 murD UDP-N-acetylmura 100.0 3.7E-66 8E-71 514.4 40.6 372 2-401 64-445 (454)
3 PRK04308 murD UDP-N-acetylmura 100.0 9.4E-66 2E-70 514.0 41.4 373 2-401 68-444 (445)
4 PRK03803 murD UDP-N-acetylmura 100.0 2.8E-65 6.1E-70 511.0 41.8 368 3-401 70-445 (448)
5 PRK01710 murD UDP-N-acetylmura 100.0 3.3E-65 7.2E-70 510.8 40.8 372 2-401 78-457 (458)
6 COG0771 MurD UDP-N-acetylmuram 100.0 4.9E-65 1.1E-69 492.8 39.2 370 3-401 71-445 (448)
7 PRK04663 murD UDP-N-acetylmura 100.0 1.3E-64 2.8E-69 504.1 40.5 365 2-401 69-436 (438)
8 PRK01390 murD UDP-N-acetylmura 100.0 4.3E-64 9.4E-69 504.1 40.2 375 2-401 66-457 (460)
9 PRK03369 murD UDP-N-acetylmura 100.0 4.8E-64 1E-68 504.8 40.3 370 3-401 72-485 (488)
10 PRK02705 murD UDP-N-acetylmura 100.0 2.1E-63 4.5E-68 499.5 41.6 378 3-401 70-454 (459)
11 PRK02472 murD UDP-N-acetylmura 100.0 2.9E-63 6.4E-68 497.0 41.8 373 2-401 69-443 (447)
12 PRK00141 murD UDP-N-acetylmura 100.0 6.4E-63 1.4E-67 495.2 42.2 371 3-401 76-465 (473)
13 PRK04690 murD UDP-N-acetylmura 100.0 8.5E-63 1.8E-67 493.3 41.6 374 2-400 70-453 (468)
14 PRK03806 murD UDP-N-acetylmura 100.0 1.4E-62 2.9E-67 490.5 40.7 366 3-401 67-436 (438)
15 PRK01438 murD UDP-N-acetylmura 100.0 1.2E-61 2.6E-66 489.1 40.5 378 2-401 79-475 (480)
16 PRK02006 murD UDP-N-acetylmura 100.0 4.8E-61 1E-65 485.9 41.0 380 2-401 70-489 (498)
17 PRK14106 murD UDP-N-acetylmura 100.0 1.4E-59 3E-64 470.8 41.6 379 2-401 69-449 (450)
18 COG0773 MurC UDP-N-acetylmuram 100.0 1.6E-59 3.4E-64 449.2 35.2 359 3-387 68-451 (459)
19 PRK03815 murD UDP-N-acetylmura 100.0 7.1E-59 1.5E-63 454.4 35.7 344 3-401 56-400 (401)
20 TIGR01082 murC UDP-N-acetylmur 100.0 1.2E-55 2.5E-60 441.2 36.5 362 2-386 59-444 (448)
21 PRK00683 murD UDP-N-acetylmura 100.0 1.9E-55 4.1E-60 435.7 34.7 349 3-401 61-413 (418)
22 PRK00421 murC UDP-N-acetylmura 100.0 3.2E-55 6.9E-60 439.6 35.3 364 2-389 67-452 (461)
23 PRK10773 murF UDP-N-acetylmura 100.0 1.2E-55 2.6E-60 441.0 29.1 362 4-401 64-446 (453)
24 TIGR01081 mpl UDP-N-acetylmura 100.0 1.7E-54 3.7E-59 432.8 35.4 363 2-387 61-441 (448)
25 TIGR01143 murF UDP-N-acetylmur 100.0 2.5E-54 5.3E-59 427.9 29.3 327 42-401 73-416 (417)
26 PRK14093 UDP-N-acetylmuramoyla 100.0 1.6E-53 3.4E-58 428.3 29.1 331 41-400 106-462 (479)
27 COG0770 MurF UDP-N-acetylmuram 100.0 3.1E-53 6.8E-58 414.7 28.3 328 41-400 101-446 (451)
28 PRK11929 putative bifunctional 100.0 3.2E-50 6.8E-55 436.1 30.5 330 41-401 601-956 (958)
29 PRK14573 bifunctional D-alanyl 100.0 9.4E-49 2E-53 416.3 34.7 357 2-389 64-444 (809)
30 PRK00139 murE UDP-N-acetylmura 100.0 9.7E-49 2.1E-53 392.2 30.9 323 41-387 93-442 (460)
31 TIGR01085 murE UDP-N-acetylmur 100.0 2.5E-48 5.4E-53 390.3 32.1 332 42-387 84-456 (464)
32 PRK11930 putative bifunctional 100.0 4.2E-49 9.2E-54 419.9 27.9 326 41-400 105-451 (822)
33 PRK14022 UDP-N-acetylmuramoyla 100.0 1.7E-47 3.7E-52 385.3 29.4 320 41-380 108-455 (481)
34 PRK11929 putative bifunctional 100.0 3.5E-47 7.5E-52 412.3 29.9 342 41-396 110-488 (958)
35 TIGR01499 folC folylpolyglutam 100.0 3.6E-45 7.8E-50 360.3 27.2 318 41-388 16-393 (397)
36 COG0769 MurE UDP-N-acetylmuram 100.0 2.9E-44 6.3E-49 355.6 30.9 336 41-387 89-457 (475)
37 TIGR02068 cya_phycin_syn cyano 100.0 3.3E-43 7.1E-48 373.2 32.1 328 41-377 477-848 (864)
38 COG0285 FolC Folylpolyglutamat 100.0 3.3E-42 7.1E-47 333.0 27.5 329 29-389 27-418 (427)
39 PRK10846 bifunctional folylpol 100.0 4.9E-42 1.1E-46 339.4 28.9 324 27-388 30-410 (416)
40 PLN02913 dihydrofolate synthet 100.0 2.1E-41 4.5E-46 340.3 29.1 344 28-388 57-504 (510)
41 PLN02881 tetrahydrofolylpolygl 100.0 8.1E-36 1.8E-40 295.4 26.6 253 28-307 41-396 (530)
42 PRK14016 cyanophycin synthetas 100.0 2.1E-32 4.5E-37 285.7 13.9 250 8-261 446-726 (727)
43 PF08245 Mur_ligase_M: Mur lig 100.0 4.8E-31 1E-35 233.5 18.1 176 48-235 1-188 (188)
44 KOG2525 Folylpolyglutamate syn 100.0 2.1E-30 4.6E-35 247.0 17.8 241 41-306 70-380 (496)
45 PF02875 Mur_ligase_C: Mur lig 99.2 9.3E-12 2E-16 96.4 5.6 76 255-333 1-81 (91)
46 COG1703 ArgK Putative periplas 95.1 0.17 3.6E-06 47.2 9.4 117 42-169 50-204 (323)
47 PF08353 DUF1727: Domain of un 93.1 0.65 1.4E-05 37.1 7.9 98 277-376 2-107 (113)
48 PRK09435 membrane ATPase/prote 93.1 1.2 2.6E-05 42.7 11.2 33 41-73 54-88 (332)
49 PRK15453 phosphoribulokinase; 91.8 0.27 5.8E-06 45.8 4.9 29 41-69 3-33 (290)
50 cd01983 Fer4_NifH The Fer4_Nif 91.4 1.3 2.8E-05 33.2 7.8 29 46-74 2-32 (99)
51 COG1763 MobB Molybdopterin-gua 90.8 0.33 7.2E-06 41.4 4.1 38 43-80 2-41 (161)
52 TIGR03172 probable selenium-de 90.7 0.31 6.7E-06 44.2 4.0 32 45-76 1-32 (232)
53 cd02040 NifH NifH gene encodes 89.8 0.47 1E-05 44.0 4.6 25 49-73 9-33 (270)
54 PRK13869 plasmid-partitioning 89.3 0.53 1.2E-05 46.6 4.8 33 42-74 120-155 (405)
55 PRK13232 nifH nitrogenase redu 89.1 0.54 1.2E-05 43.8 4.5 31 44-74 2-34 (273)
56 PHA02519 plasmid partition pro 89.0 0.59 1.3E-05 46.0 4.8 33 42-74 105-140 (387)
57 PRK00652 lpxK tetraacyldisacch 88.7 0.65 1.4E-05 44.5 4.7 33 42-74 48-84 (325)
58 PRK13705 plasmid-partitioning 88.3 0.67 1.4E-05 45.7 4.7 33 42-74 105-140 (388)
59 COG1936 Predicted nucleotide k 88.2 0.44 9.5E-06 40.8 2.9 25 44-72 1-27 (180)
60 PRK13235 nifH nitrogenase redu 88.0 0.75 1.6E-05 42.9 4.7 30 44-73 2-33 (274)
61 PF00485 PRK: Phosphoribulokin 87.8 0.5 1.1E-05 41.6 3.2 27 45-71 1-29 (194)
62 COG2403 Predicted GTPase [Gene 87.8 0.6 1.3E-05 44.7 3.8 31 42-72 125-158 (449)
63 PHA02518 ParA-like protein; Pr 87.7 0.83 1.8E-05 40.5 4.6 26 48-73 8-33 (211)
64 TIGR03029 EpsG chain length de 87.6 1.2 2.6E-05 41.4 5.8 32 41-72 101-135 (274)
65 COG0132 BioD Dethiobiotin synt 87.3 0.85 1.9E-05 41.0 4.3 31 43-73 2-35 (223)
66 PRK14494 putative molybdopteri 87.3 0.88 1.9E-05 41.2 4.5 34 43-76 1-36 (229)
67 PRK13230 nitrogenase reductase 86.2 1 2.2E-05 42.2 4.5 30 44-73 2-33 (279)
68 TIGR01007 eps_fam capsular exo 86.1 1.7 3.7E-05 38.5 5.6 32 41-72 15-49 (204)
69 PRK13849 putative crown gall t 85.9 1.2 2.6E-05 40.5 4.6 30 44-73 2-34 (231)
70 PRK10037 cell division protein 85.7 1.2 2.6E-05 40.9 4.6 30 44-73 2-34 (250)
71 PRK14493 putative bifunctional 85.7 1.2 2.6E-05 41.6 4.6 34 43-77 1-36 (274)
72 TIGR03453 partition_RepA plasm 85.6 1.2 2.6E-05 43.9 4.8 32 42-73 103-137 (387)
73 COG2894 MinD Septum formation 85.3 1.1 2.3E-05 40.1 3.8 38 44-81 3-44 (272)
74 PRK14495 putative molybdopteri 85.0 1.3 2.8E-05 43.9 4.6 35 43-77 1-37 (452)
75 TIGR03018 pepcterm_TyrKin exop 85.0 1.5 3.2E-05 39.0 4.7 32 41-72 33-68 (207)
76 TIGR03371 cellulose_yhjQ cellu 84.8 1.4 3E-05 40.1 4.6 30 44-73 2-34 (246)
77 PF06564 YhjQ: YhjQ protein; 84.8 0.9 1.9E-05 41.5 3.2 28 45-72 6-33 (243)
78 cd02029 PRK_like Phosphoribulo 84.8 1.1 2.5E-05 41.4 3.9 26 45-70 1-28 (277)
79 KOG3347 Predicted nucleotide k 84.7 0.86 1.9E-05 38.1 2.7 25 42-66 6-32 (176)
80 cd03116 MobB Molybdenum is an 84.5 1.6 3.5E-05 37.1 4.5 33 43-75 1-35 (159)
81 PRK13234 nifH nitrogenase redu 83.0 1.9 4.1E-05 40.8 4.8 33 42-74 3-37 (295)
82 cd02117 NifH_like This family 82.8 1.4 3.1E-05 39.3 3.7 28 45-72 2-31 (212)
83 TIGR00554 panK_bact pantothena 82.6 1.8 3.9E-05 40.8 4.4 28 41-68 60-89 (290)
84 PRK05439 pantothenate kinase; 82.4 2.5 5.3E-05 40.2 5.2 27 42-68 85-113 (311)
85 PF03205 MobB: Molybdopterin g 82.4 2.1 4.5E-05 35.6 4.3 31 44-74 1-33 (140)
86 PRK13233 nifH nitrogenase redu 82.2 1.9 4.2E-05 40.1 4.5 31 44-74 3-36 (275)
87 PF01656 CbiA: CobQ/CobB/MinD/ 82.0 1.5 3.3E-05 38.0 3.6 29 45-73 3-31 (195)
88 COG0552 FtsY Signal recognitio 82.0 2.2 4.8E-05 40.6 4.7 33 42-74 138-172 (340)
89 COG4240 Predicted kinase [Gene 81.4 2.7 5.8E-05 37.9 4.7 51 21-72 29-82 (300)
90 COG1072 CoaA Panthothenate kin 81.4 1.9 4E-05 39.9 3.8 31 41-71 80-112 (283)
91 PRK00784 cobyric acid synthase 81.3 1.7 3.7E-05 44.2 4.0 29 44-72 3-34 (488)
92 cd03109 DTBS Dethiobiotin synt 81.3 3.1 6.8E-05 34.2 4.9 40 52-109 10-49 (134)
93 TIGR01281 DPOR_bchL light-inde 81.2 1.5 3.3E-05 40.6 3.4 25 49-73 8-32 (268)
94 PRK07667 uridine kinase; Provi 81.0 3.3 7.1E-05 36.4 5.3 31 42-72 16-48 (193)
95 cd02028 UMPK_like Uridine mono 80.9 2.2 4.8E-05 37.0 4.1 28 45-72 1-30 (179)
96 PRK14974 cell division protein 80.8 2.7 5.8E-05 40.5 5.0 33 42-74 139-173 (336)
97 cd02032 Bchl_like This family 80.5 1.7 3.6E-05 40.4 3.4 25 49-73 8-32 (267)
98 PRK06696 uridine kinase; Valid 80.4 3 6.4E-05 37.6 4.9 33 41-73 20-54 (223)
99 PRK10751 molybdopterin-guanine 80.1 3.1 6.7E-05 36.0 4.6 36 42-77 5-42 (173)
100 TIGR00176 mobB molybdopterin-g 79.6 2.6 5.7E-05 35.6 4.0 32 45-76 1-34 (155)
101 PRK11670 antiporter inner memb 79.5 2.7 5.8E-05 41.1 4.6 31 43-73 107-140 (369)
102 TIGR00064 ftsY signal recognit 78.7 3.4 7.3E-05 38.6 4.8 32 42-73 71-104 (272)
103 PF13500 AAA_26: AAA domain; P 78.7 2.9 6.3E-05 36.8 4.2 30 44-73 1-33 (199)
104 PF03308 ArgK: ArgK protein; 78.5 4.6 9.9E-05 37.2 5.4 122 33-166 17-179 (266)
105 PRK10416 signal recognition pa 78.5 3.6 7.7E-05 39.4 5.0 33 42-74 113-147 (318)
106 PF00448 SRP54: SRP54-type pro 78.4 2.3 4.9E-05 37.6 3.4 28 46-74 7-34 (196)
107 cd02042 ParA ParA and ParB of 78.3 3 6.5E-05 32.2 3.8 47 45-109 4-50 (104)
108 CHL00072 chlL photochlorophyll 78.2 2.2 4.8E-05 40.2 3.5 25 49-73 8-32 (290)
109 TIGR01968 minD_bact septum sit 78.2 2.9 6.4E-05 38.2 4.3 30 44-73 2-34 (261)
110 PRK12374 putative dithiobiotin 78.1 3.2 6.9E-05 37.6 4.4 30 45-74 4-36 (231)
111 PRK13185 chlL protochlorophyll 78.0 2.3 4.9E-05 39.5 3.5 30 44-73 3-34 (270)
112 PRK09270 nucleoside triphospha 78.0 4 8.7E-05 36.9 5.0 42 27-69 18-61 (229)
113 cd02036 MinD Bacterial cell di 77.8 2.7 5.8E-05 35.9 3.7 30 45-74 4-33 (179)
114 TIGR00455 apsK adenylylsulfate 77.2 5.7 0.00012 34.4 5.6 41 30-71 6-48 (184)
115 COG0572 Udk Uridine kinase [Nu 77.0 2.2 4.7E-05 38.2 2.8 26 43-68 8-35 (218)
116 COG3367 Uncharacterized conser 77.0 6.3 0.00014 37.3 5.9 62 13-74 109-182 (339)
117 PRK03846 adenylylsulfate kinas 76.7 5.6 0.00012 35.0 5.4 41 30-71 12-54 (198)
118 COG0769 MurE UDP-N-acetylmuram 76.7 0.55 1.2E-05 47.5 -1.2 120 15-138 37-161 (475)
119 TIGR00682 lpxK tetraacyldisacc 76.1 4.3 9.3E-05 38.7 4.7 33 42-74 27-63 (311)
120 PF13207 AAA_17: AAA domain; P 75.9 3 6.4E-05 33.2 3.2 25 45-72 1-27 (121)
121 cd02033 BchX Chlorophyllide re 75.8 4.6 9.9E-05 38.8 4.9 34 41-74 29-64 (329)
122 COG0237 CoaE Dephospho-CoA kin 75.1 2.7 5.9E-05 37.3 2.9 28 43-74 2-31 (201)
123 cd02025 PanK Pantothenate kina 74.7 3.9 8.3E-05 36.9 3.9 23 45-67 1-25 (220)
124 TIGR01287 nifH nitrogenase iro 74.4 3.2 6.9E-05 38.6 3.4 29 45-73 2-32 (275)
125 TIGR02016 BchX chlorophyllide 74.1 3.3 7.2E-05 39.2 3.5 25 49-73 8-32 (296)
126 cd02037 MRP-like MRP (Multiple 74.1 3.4 7.5E-05 35.2 3.3 26 48-73 7-32 (169)
127 PF07015 VirC1: VirC1 protein; 73.9 3.6 7.8E-05 37.2 3.4 31 44-74 2-35 (231)
128 PRK13236 nitrogenase reductase 73.3 3.4 7.4E-05 39.0 3.4 33 42-74 5-39 (296)
129 CHL00175 minD septum-site dete 73.1 5.7 0.00012 37.0 4.8 32 42-73 14-48 (281)
130 PRK01906 tetraacyldisaccharide 72.3 6 0.00013 38.2 4.8 32 42-73 55-90 (338)
131 COG1618 Predicted nucleotide k 72.3 5.1 0.00011 34.1 3.7 30 43-72 5-36 (179)
132 COG3954 PrkB Phosphoribulokina 71.9 2.7 5.8E-05 36.7 2.0 31 41-71 3-35 (289)
133 PRK00889 adenylylsulfate kinas 71.9 6.5 0.00014 33.7 4.5 32 41-72 2-35 (175)
134 PRK01077 cobyrinic acid a,c-di 71.8 4.7 0.0001 40.6 4.1 30 43-72 3-35 (451)
135 PF01121 CoaE: Dephospho-CoA k 71.8 3.6 7.7E-05 35.8 2.8 24 45-72 2-27 (180)
136 PRK13231 nitrogenase reductase 71.7 2 4.4E-05 39.7 1.4 29 44-73 3-33 (264)
137 PRK14489 putative bifunctional 71.7 5.8 0.00013 38.7 4.6 36 42-77 204-241 (366)
138 PF13614 AAA_31: AAA domain; P 71.7 6.2 0.00013 32.9 4.3 29 44-72 1-32 (157)
139 COG1192 Soj ATPases involved i 71.6 4.9 0.00011 37.0 3.9 30 44-73 6-36 (259)
140 TIGR01425 SRP54_euk signal rec 71.5 6.9 0.00015 38.9 5.1 32 43-74 100-133 (429)
141 PTZ00451 dephospho-CoA kinase; 71.4 3.8 8.3E-05 37.5 3.1 26 44-72 2-29 (244)
142 PRK00090 bioD dithiobiotin syn 71.2 5.5 0.00012 35.7 4.1 28 46-73 2-32 (222)
143 TIGR01969 minD_arch cell divis 71.0 4.6 9.9E-05 36.7 3.6 26 48-73 8-33 (251)
144 KOG3022 Predicted ATPase, nucl 70.5 4.2 9E-05 37.7 3.0 30 44-73 48-80 (300)
145 COG3640 CooC CO dehydrogenase 70.5 5.4 0.00012 36.1 3.7 28 45-72 2-32 (255)
146 PF02606 LpxK: Tetraacyldisacc 70.1 6.8 0.00015 37.6 4.6 34 41-74 33-70 (326)
147 PRK14491 putative bifunctional 69.7 6.6 0.00014 41.0 4.8 36 42-77 9-46 (597)
148 cd02034 CooC The accessory pro 68.2 6.4 0.00014 31.5 3.4 25 49-73 7-31 (116)
149 COG0489 Mrp ATPases involved i 68.2 8.5 0.00018 35.8 4.7 32 42-73 56-90 (265)
150 TIGR00379 cobB cobyrinic acid 67.4 5.9 0.00013 39.9 3.7 24 49-72 7-31 (449)
151 PF09140 MipZ: ATPase MipZ; I 67.4 5.3 0.00011 36.6 3.0 30 45-74 2-34 (261)
152 cd01672 TMPK Thymidine monopho 66.3 10 0.00022 32.9 4.6 30 45-74 2-33 (200)
153 PRK10818 cell division inhibit 66.2 6.7 0.00015 36.3 3.7 29 44-72 3-34 (270)
154 COG1663 LpxK Tetraacyldisaccha 66.1 9 0.00019 36.6 4.4 32 42-73 46-81 (336)
155 PRK12723 flagellar biosynthesi 65.4 5.6 0.00012 39.1 3.0 24 44-67 175-200 (388)
156 TIGR00313 cobQ cobyric acid sy 65.3 5.9 0.00013 40.2 3.3 27 47-73 2-31 (475)
157 TIGR00750 lao LAO/AO transport 65.0 11 0.00024 35.6 4.9 34 41-74 32-67 (300)
158 PF01583 APS_kinase: Adenylyls 64.6 13 0.00027 31.6 4.6 30 44-73 3-34 (156)
159 PRK08233 hypothetical protein; 64.6 6.4 0.00014 33.7 3.0 24 43-66 3-28 (182)
160 cd02024 NRK1 Nicotinamide ribo 64.6 5 0.00011 35.1 2.3 21 45-65 1-23 (187)
161 PRK09841 cryptic autophosphory 64.5 9.8 0.00021 40.8 4.9 33 41-73 529-564 (726)
162 PRK05480 uridine/cytidine kina 63.9 8.2 0.00018 34.2 3.6 25 41-65 4-30 (209)
163 cd03113 CTGs CTP synthetase (C 63.6 17 0.00036 33.2 5.4 62 45-114 2-71 (255)
164 PF07755 DUF1611: Protein of u 63.5 11 0.00024 35.5 4.5 62 13-74 74-146 (301)
165 TIGR00041 DTMP_kinase thymidyl 63.3 11 0.00023 32.9 4.2 30 43-72 3-34 (195)
166 PTZ00301 uridine kinase; Provi 62.4 8.7 0.00019 34.3 3.5 24 43-66 3-28 (210)
167 cd03111 CpaE_like This protein 61.2 10 0.00023 29.6 3.4 28 47-74 6-34 (106)
168 PLN02796 D-glycerate 3-kinase 61.0 12 0.00027 36.0 4.4 30 43-72 100-131 (347)
169 KOG3354 Gluconate kinase [Carb 60.1 6.7 0.00015 33.2 2.1 22 45-67 17-38 (191)
170 PRK07429 phosphoribulokinase; 60.0 9.2 0.0002 36.7 3.4 27 42-68 7-35 (327)
171 PF13521 AAA_28: AAA domain; P 59.7 7.2 0.00016 33.0 2.4 19 46-64 2-22 (163)
172 KOG3308 Uncharacterized protei 59.4 7.8 0.00017 34.2 2.5 26 43-68 4-31 (225)
173 cd02023 UMPK Uridine monophosp 59.3 7.9 0.00017 33.9 2.7 21 45-65 1-23 (198)
174 COG0541 Ffh Signal recognition 59.2 15 0.00033 36.3 4.7 108 43-160 100-218 (451)
175 COG1855 ATPase (PilT family) [ 59.1 7.8 0.00017 38.5 2.7 78 41-129 261-340 (604)
176 cd02019 NK Nucleoside/nucleoti 58.8 13 0.00029 26.4 3.3 21 45-65 1-23 (69)
177 PRK07933 thymidylate kinase; V 58.1 17 0.00036 32.5 4.5 29 45-73 2-32 (213)
178 cd02026 PRK Phosphoribulokinas 58.0 7.3 0.00016 36.4 2.3 25 45-69 1-27 (273)
179 COG1102 Cmk Cytidylate kinase 57.9 12 0.00026 32.0 3.2 30 45-77 2-33 (179)
180 PRK11519 tyrosine kinase; Prov 57.6 20 0.00043 38.5 5.8 33 41-73 524-559 (719)
181 PLN02422 dephospho-CoA kinase 57.6 10 0.00022 34.5 3.1 27 44-74 2-30 (232)
182 PRK04040 adenylate kinase; Pro 57.6 13 0.00027 32.6 3.6 28 44-72 3-32 (188)
183 COG4088 Predicted nucleotide k 57.6 13 0.00028 33.2 3.5 30 43-72 1-32 (261)
184 PRK00698 tmk thymidylate kinas 57.6 17 0.00038 31.7 4.6 30 43-72 3-34 (205)
185 COG3265 GntK Gluconate kinase 57.5 6 0.00013 33.2 1.4 21 47-68 2-22 (161)
186 cd02022 DPCK Dephospho-coenzym 57.2 12 0.00026 32.3 3.4 26 45-74 1-28 (179)
187 PLN00124 succinyl-CoA ligase [ 57.0 52 0.0011 32.8 8.2 94 267-367 317-420 (422)
188 PRK14734 coaE dephospho-CoA ki 57.0 11 0.00023 33.4 3.1 26 44-73 2-29 (200)
189 PF02374 ArsA_ATPase: Anion-tr 56.9 12 0.00027 35.5 3.7 27 49-75 9-35 (305)
190 TIGR00235 udk uridine kinase. 56.6 12 0.00025 33.2 3.3 27 41-67 4-32 (207)
191 TIGR00347 bioD dethiobiotin sy 56.4 13 0.00028 31.5 3.4 25 50-74 7-31 (166)
192 COG0529 CysC Adenylylsulfate k 56.3 32 0.0007 29.9 5.6 33 41-73 21-55 (197)
193 TIGR00959 ffh signal recogniti 56.1 11 0.00023 37.7 3.2 31 44-74 100-133 (428)
194 cd03115 SRP The signal recogni 55.8 21 0.00045 30.4 4.7 30 45-74 2-33 (173)
195 TIGR02880 cbbX_cfxQ probable R 55.7 10 0.00022 35.6 2.9 26 45-71 63-88 (284)
196 TIGR00152 dephospho-CoA kinase 55.5 9.2 0.0002 33.2 2.4 20 45-64 1-22 (188)
197 PF06418 CTP_synth_N: CTP synt 55.4 16 0.00034 33.7 3.8 30 44-73 2-35 (276)
198 PRK00771 signal recognition pa 55.3 20 0.00044 35.9 5.0 32 43-74 95-128 (437)
199 PF13238 AAA_18: AAA domain; P 54.9 12 0.00027 29.6 2.9 20 46-65 1-22 (129)
200 TIGR03815 CpaE_hom_Actino heli 54.8 13 0.00029 35.4 3.6 59 14-72 53-125 (322)
201 PRK05380 pyrG CTP synthetase; 54.8 23 0.00051 36.2 5.3 31 43-73 2-36 (533)
202 PRK06547 hypothetical protein; 54.7 19 0.00042 30.9 4.3 25 41-65 13-39 (172)
203 COG1797 CobB Cobyrinic acid a, 54.7 2.4E+02 0.0051 28.3 25.8 253 46-343 3-308 (451)
204 TIGR01360 aden_kin_iso1 adenyl 54.5 14 0.00031 31.7 3.4 30 42-74 2-33 (188)
205 COG0504 PyrG CTP synthase (UTP 54.1 23 0.00049 35.6 5.0 30 44-73 2-35 (533)
206 COG3172 NadR Predicted ATPase/ 54.0 13 0.00028 31.7 2.8 25 43-67 8-34 (187)
207 PRK12726 flagellar biosynthesi 53.9 22 0.00049 34.9 4.9 32 42-73 205-238 (407)
208 TIGR00337 PyrG CTP synthase. C 53.8 26 0.00056 35.8 5.5 30 44-73 2-35 (525)
209 PLN02348 phosphoribulokinase 53.8 18 0.0004 35.5 4.3 29 41-69 47-77 (395)
210 COG0455 flhG Antiactivator of 53.7 23 0.0005 32.9 4.8 30 43-72 2-35 (262)
211 TIGR03499 FlhF flagellar biosy 53.6 21 0.00047 33.4 4.7 31 42-72 193-227 (282)
212 PLN02924 thymidylate kinase 53.5 21 0.00044 32.2 4.4 32 41-72 14-47 (220)
213 PF00142 Fer4_NifH: 4Fe-4S iro 53.5 15 0.00033 34.0 3.5 27 50-76 9-35 (273)
214 PRK13886 conjugal transfer pro 53.3 15 0.00033 33.5 3.5 25 48-72 10-34 (241)
215 PRK14733 coaE dephospho-CoA ki 52.6 13 0.00029 33.0 2.9 27 43-72 6-34 (204)
216 PRK11889 flhF flagellar biosyn 52.5 25 0.00053 34.8 4.9 31 44-74 242-274 (436)
217 PRK00081 coaE dephospho-CoA ki 52.2 14 0.0003 32.4 3.0 26 44-73 3-30 (194)
218 COG1428 Deoxynucleoside kinase 52.2 16 0.00036 32.5 3.4 25 42-66 3-29 (216)
219 PLN03046 D-glycerate 3-kinase; 51.8 22 0.00049 35.3 4.5 31 43-73 212-244 (460)
220 cd00477 FTHFS Formyltetrahydro 51.3 24 0.00051 35.8 4.6 31 42-72 37-73 (524)
221 PRK14731 coaE dephospho-CoA ki 51.2 16 0.00034 32.5 3.2 25 44-72 6-32 (208)
222 PLN02327 CTP synthase 50.9 30 0.00065 35.6 5.4 62 44-113 2-71 (557)
223 PF08433 KTI12: Chromatin asso 50.8 21 0.00046 33.2 4.1 30 43-72 1-32 (270)
224 cd02038 FleN-like FleN is a me 50.8 17 0.00037 29.9 3.1 51 45-109 4-55 (139)
225 PRK14730 coaE dephospho-CoA ki 50.3 18 0.00038 31.9 3.3 27 44-73 2-30 (195)
226 PRK13768 GTPase; Provisional 50.3 16 0.00035 33.6 3.2 28 45-72 4-33 (253)
227 COG0125 Tmk Thymidylate kinase 49.9 21 0.00046 31.8 3.8 31 43-73 3-35 (208)
228 KOG1324 Dihydrofolate reductas 49.3 17 0.00037 31.3 2.9 14 250-263 61-74 (190)
229 PRK10867 signal recognition pa 49.2 28 0.00062 34.8 4.9 32 43-74 100-134 (433)
230 PRK06761 hypothetical protein; 48.9 15 0.00032 34.5 2.7 29 44-72 4-34 (282)
231 PF13604 AAA_30: AAA domain; P 48.1 33 0.00071 30.2 4.7 32 42-73 17-50 (196)
232 PRK13896 cobyrinic acid a,c-di 48.1 23 0.00049 35.5 4.0 28 45-72 3-33 (433)
233 PF00580 UvrD-helicase: UvrD/R 47.9 18 0.00038 33.9 3.2 30 41-71 14-44 (315)
234 PRK13506 formate--tetrahydrofo 47.8 32 0.0007 35.2 5.0 31 42-72 53-89 (578)
235 cd03114 ArgK-like The function 47.5 21 0.00045 29.8 3.2 28 46-73 2-31 (148)
236 PF01935 DUF87: Domain of unkn 47.4 25 0.00055 31.5 4.0 30 42-72 25-55 (229)
237 PF08303 tRNA_lig_kinase: tRNA 47.4 10 0.00023 32.3 1.3 23 46-69 5-27 (168)
238 cd02027 APSK Adenosine 5'-phos 47.3 27 0.00059 29.1 3.9 27 46-72 2-30 (149)
239 PRK14732 coaE dephospho-CoA ki 47.3 15 0.00032 32.4 2.4 19 45-63 1-21 (196)
240 PRK03333 coaE dephospho-CoA ki 47.1 17 0.00037 35.9 3.0 20 44-63 2-23 (395)
241 cd01130 VirB11-like_ATPase Typ 46.9 24 0.00053 30.6 3.7 35 31-66 14-50 (186)
242 PF02223 Thymidylate_kin: Thym 46.2 23 0.00051 30.5 3.5 21 52-72 7-27 (186)
243 COG4555 NatA ABC-type Na+ tran 45.4 20 0.00044 31.9 2.8 26 41-66 26-53 (245)
244 cd00886 MogA_MoaB MogA_MoaB fa 45.2 76 0.0016 26.5 6.3 45 334-378 22-70 (152)
245 PLN02974 adenosylmethionine-8- 45.1 28 0.00061 37.8 4.5 32 41-72 25-59 (817)
246 KOG0635 Adenosine 5'-phosphosu 45.1 44 0.00095 28.2 4.6 33 41-73 29-63 (207)
247 cd03243 ABC_MutS_homologs The 44.9 29 0.00062 30.5 3.9 28 43-70 29-60 (202)
248 PF00106 adh_short: short chai 44.8 1.1E+02 0.0025 25.2 7.5 86 294-387 1-98 (167)
249 PRK13505 formate--tetrahydrofo 44.7 35 0.00077 34.9 4.8 32 42-73 54-91 (557)
250 PRK06995 flhF flagellar biosyn 44.3 36 0.00078 34.6 4.8 24 43-66 256-281 (484)
251 PRK01184 hypothetical protein; 44.2 30 0.00065 29.7 3.8 27 43-73 1-29 (184)
252 PF01558 POR: Pyruvate ferredo 44.1 2E+02 0.0043 24.4 12.3 144 52-252 3-153 (173)
253 TIGR01005 eps_transp_fam exopo 44.1 30 0.00064 37.4 4.5 32 42-73 545-579 (754)
254 KOG2749 mRNA cleavage and poly 43.9 32 0.00069 33.2 4.1 31 42-72 102-134 (415)
255 PRK06217 hypothetical protein; 43.9 23 0.00049 30.6 3.0 21 45-65 3-25 (183)
256 PF02492 cobW: CobW/HypB/UreG, 43.7 90 0.002 26.7 6.8 30 44-74 1-32 (178)
257 COG1348 NifH Nitrogenase subun 43.2 24 0.00052 32.0 3.0 32 45-76 3-36 (278)
258 PRK06762 hypothetical protein; 43.1 26 0.00056 29.5 3.2 22 44-65 3-26 (166)
259 PRK14490 putative bifunctional 42.8 35 0.00076 33.3 4.5 34 42-76 4-39 (369)
260 PRK13695 putative NTPase; Prov 42.5 36 0.00078 29.0 4.0 28 45-72 2-31 (174)
261 PRK08118 topology modulation p 42.5 28 0.00061 29.7 3.3 23 44-66 2-26 (167)
262 PRK00300 gmk guanylate kinase; 42.4 24 0.00053 30.9 3.0 26 41-66 3-30 (205)
263 cd00550 ArsA_ATPase Oxyanion-t 42.3 25 0.00054 32.4 3.1 25 49-73 8-32 (254)
264 cd02035 ArsA ArsA ATPase funct 42.0 28 0.00061 31.1 3.4 24 49-72 7-30 (217)
265 TIGR02782 TrbB_P P-type conjug 41.9 54 0.0012 31.0 5.4 50 17-67 107-158 (299)
266 PRK05632 phosphate acetyltrans 41.1 34 0.00074 36.5 4.3 29 45-73 4-35 (684)
267 COG0003 ArsA Predicted ATPase 41.0 28 0.00062 33.3 3.4 30 44-73 3-34 (322)
268 PRK13973 thymidylate kinase; P 40.8 24 0.00053 31.4 2.8 30 44-73 4-35 (213)
269 PRK13947 shikimate kinase; Pro 40.1 31 0.00068 29.1 3.3 21 45-65 3-25 (171)
270 TIGR00150 HI0065_YjeE ATPase, 39.9 48 0.001 27.3 4.1 31 35-66 15-47 (133)
271 TIGR02322 phosphon_PhnN phosph 39.9 28 0.00061 29.7 3.0 24 44-67 2-27 (179)
272 cd02020 CMPK Cytidine monophos 39.6 27 0.00057 28.5 2.7 21 45-65 1-23 (147)
273 PRK05541 adenylylsulfate kinas 39.4 49 0.0011 28.2 4.4 32 41-72 5-38 (176)
274 PF05872 DUF853: Bacterial pro 39.2 25 0.00054 35.2 2.7 32 42-74 21-52 (502)
275 cd03281 ABC_MSH5_euk MutS5 hom 38.5 43 0.00092 29.9 4.0 29 44-72 30-62 (213)
276 PRK00131 aroK shikimate kinase 38.4 38 0.00083 28.4 3.6 24 42-65 3-28 (175)
277 KOG0780 Signal recognition par 38.3 23 0.00051 34.6 2.3 31 44-74 102-134 (483)
278 PF01268 FTHFS: Formate--tetra 37.5 45 0.00098 34.2 4.3 41 32-72 42-89 (557)
279 PRK14528 adenylate kinase; Pro 37.4 43 0.00093 29.1 3.7 26 44-72 2-29 (186)
280 PRK06278 cobyrinic acid a,c-di 37.3 38 0.00083 34.3 3.8 27 42-68 237-266 (476)
281 cd03283 ABC_MutS-like MutS-lik 36.9 48 0.001 29.2 4.0 29 43-71 25-57 (199)
282 smart00053 DYNc Dynamin, GTPas 35.8 30 0.00064 31.6 2.5 38 27-64 6-49 (240)
283 COG2087 CobU Adenosyl cobinami 35.6 1.3E+02 0.0028 25.9 6.0 79 294-376 1-82 (175)
284 COG2019 AdkA Archaeal adenylat 35.3 43 0.00093 28.8 3.2 23 43-65 4-28 (189)
285 PRK05703 flhF flagellar biosyn 35.3 59 0.0013 32.5 4.7 30 43-72 221-254 (424)
286 KOG2004 Mitochondrial ATP-depe 34.8 43 0.00093 35.5 3.7 36 41-76 436-473 (906)
287 cd01131 PilT Pilus retraction 34.7 55 0.0012 28.7 4.0 22 45-66 3-26 (198)
288 PRK07261 topology modulation p 34.5 42 0.0009 28.7 3.1 20 46-65 3-24 (171)
289 PF00005 ABC_tran: ABC transpo 34.3 39 0.00084 27.2 2.8 25 42-66 10-36 (137)
290 TIGR01033 DNA-binding regulato 34.3 96 0.0021 28.3 5.6 55 233-289 54-115 (238)
291 PRK13507 formate--tetrahydrofo 34.3 49 0.0011 33.9 3.9 31 42-72 62-98 (587)
292 COG3910 Predicted ATPase [Gene 34.2 29 0.00062 30.6 2.0 49 13-64 10-60 (233)
293 TIGR00177 molyb_syn molybdenum 33.6 1.2E+02 0.0026 25.1 5.7 51 331-382 26-78 (144)
294 PRK08154 anaerobic benzoate ca 33.5 61 0.0013 30.8 4.4 25 41-65 131-157 (309)
295 PLN02318 phosphoribulokinase/u 33.3 45 0.00098 34.8 3.6 26 41-66 63-90 (656)
296 KOG3220 Similar to bacterial d 33.2 41 0.00089 29.8 2.8 26 43-72 1-28 (225)
297 cd03223 ABCD_peroxisomal_ALDP 32.8 46 0.001 28.2 3.2 26 41-66 25-52 (166)
298 cd03280 ABC_MutS2 MutS2 homolo 32.8 59 0.0013 28.5 3.9 27 44-70 29-59 (200)
299 PF02423 OCD_Mu_crystall: Orni 32.8 82 0.0018 30.0 5.1 96 268-381 98-204 (313)
300 PRK08099 bifunctional DNA-bind 32.7 37 0.00081 33.6 2.8 24 42-65 218-243 (399)
301 smart00852 MoCF_biosynth Proba 32.6 1.2E+02 0.0026 24.6 5.5 48 333-380 19-68 (135)
302 PRK12724 flagellar biosynthesi 32.0 74 0.0016 31.8 4.7 31 43-73 223-256 (432)
303 KOG1532 GTPase XAB1, interacts 32.0 51 0.0011 30.8 3.3 26 45-71 24-49 (366)
304 COG5271 MDN1 AAA ATPase contai 31.9 47 0.001 39.2 3.6 25 43-68 467-491 (4600)
305 PRK04296 thymidine kinase; Pro 31.8 67 0.0015 28.0 4.1 30 44-73 3-34 (190)
306 PF12846 AAA_10: AAA-like doma 31.5 46 0.001 30.7 3.2 27 45-72 6-32 (304)
307 PRK13975 thymidylate kinase; P 31.4 45 0.00098 28.9 2.9 24 44-67 3-28 (196)
308 cd01129 PulE-GspE PulE/GspE Th 31.3 70 0.0015 29.6 4.3 29 33-61 70-100 (264)
309 PLN02759 Formate--tetrahydrofo 31.1 69 0.0015 33.2 4.4 31 42-72 68-105 (637)
310 KOG0447 Dynamin-like GTP bindi 30.9 45 0.00098 34.1 3.0 25 40-64 305-331 (980)
311 PF02562 PhoH: PhoH-like prote 30.7 50 0.0011 29.3 3.1 38 267-304 120-157 (205)
312 PF13476 AAA_23: AAA domain; P 30.6 53 0.0011 28.2 3.3 27 42-68 18-46 (202)
313 PF13555 AAA_29: P-loop contai 30.6 75 0.0016 22.3 3.3 25 44-68 24-50 (62)
314 PRK08534 pyruvate ferredoxin o 30.6 3.5E+02 0.0075 23.2 12.4 94 45-164 3-98 (181)
315 cd00758 MoCF_BD MoCF_BD: molyb 30.6 1.3E+02 0.0029 24.3 5.4 46 333-378 20-67 (133)
316 PF07931 CPT: Chloramphenicol 30.2 31 0.00067 29.8 1.6 23 44-66 2-26 (174)
317 TIGR01313 therm_gnt_kin carboh 30.1 37 0.0008 28.5 2.1 19 47-65 2-22 (163)
318 PF10662 PduV-EutP: Ethanolami 30.0 3.2E+02 0.007 22.7 7.5 61 97-163 62-128 (143)
319 TIGR01420 pilT_fam pilus retra 30.0 54 0.0012 31.7 3.4 32 34-65 113-146 (343)
320 COG1066 Sms Predicted ATP-depe 29.7 98 0.0021 30.7 5.0 131 27-160 74-213 (456)
321 PRK13826 Dtr system oriT relax 29.7 57 0.0012 36.7 3.9 31 43-73 397-429 (1102)
322 PRK13477 bifunctional pantoate 29.5 63 0.0014 33.1 3.9 24 42-65 283-308 (512)
323 PRK14723 flhF flagellar biosyn 29.4 80 0.0017 34.0 4.7 31 43-73 185-219 (767)
324 PRK14722 flhF flagellar biosyn 29.3 82 0.0018 30.9 4.5 28 42-69 136-166 (374)
325 TIGR02173 cyt_kin_arch cytidyl 29.2 52 0.0011 27.6 2.9 21 45-65 2-24 (171)
326 TIGR01613 primase_Cterm phage/ 28.7 34 0.00074 32.3 1.8 21 49-69 84-104 (304)
327 PRK13946 shikimate kinase; Pro 28.7 59 0.0013 28.0 3.2 22 44-65 11-34 (184)
328 PRK13833 conjugal transfer pro 28.6 90 0.0019 29.9 4.6 33 32-65 134-168 (323)
329 smart00534 MUTSac ATPase domai 28.5 67 0.0014 27.8 3.5 28 45-72 1-32 (185)
330 PF00004 AAA: ATPase family as 28.4 53 0.0011 25.9 2.7 21 46-66 1-23 (132)
331 PRK04182 cytidylate kinase; Pr 28.4 54 0.0012 27.7 2.8 21 45-65 2-24 (180)
332 PRK00023 cmk cytidylate kinase 28.2 61 0.0013 29.2 3.2 23 43-65 4-28 (225)
333 COG4586 ABC-type uncharacteriz 28.2 60 0.0013 30.4 3.1 35 42-76 49-85 (325)
334 PRK07589 ornithine cyclodeamin 28.0 3.2E+02 0.007 26.4 8.3 95 267-379 98-203 (346)
335 cd00227 CPT Chloramphenicol (C 28.0 70 0.0015 27.2 3.5 23 44-66 3-27 (175)
336 PRK06851 hypothetical protein; 27.9 76 0.0017 31.0 4.0 31 42-72 29-61 (367)
337 cd04236 AAK_NAGS-Urea AAK_NAGS 27.9 1.1E+02 0.0023 28.6 4.8 64 234-302 8-77 (271)
338 cd03229 ABC_Class3 This class 27.9 63 0.0014 27.6 3.2 26 41-66 24-51 (178)
339 TIGR02371 ala_DH_arch alanine 27.7 2.3E+02 0.005 27.0 7.3 96 267-380 97-203 (325)
340 PRK14530 adenylate kinase; Pro 27.6 64 0.0014 28.6 3.3 27 44-73 4-32 (215)
341 PRK09825 idnK D-gluconate kina 27.4 68 0.0015 27.6 3.3 23 44-66 4-28 (176)
342 PF04693 DDE_Tnp_2: Archaeal p 27.2 59 0.0013 30.6 2.9 45 236-281 51-98 (327)
343 PRK10536 hypothetical protein; 27.1 1.7E+02 0.0037 27.1 5.9 57 267-323 177-234 (262)
344 COG5324 Uncharacterized conser 27.1 66 0.0014 32.4 3.3 24 46-73 380-403 (758)
345 cd03255 ABC_MJ0796_Lo1CDE_FtsE 27.0 63 0.0014 28.5 3.1 26 41-66 28-55 (218)
346 cd03226 ABC_cobalt_CbiO_domain 27.0 62 0.0013 28.3 3.1 25 41-65 24-50 (205)
347 COG5623 CLP1 Predicted GTPase 26.9 75 0.0016 30.1 3.5 31 42-72 98-130 (424)
348 TIGR00017 cmk cytidylate kinas 26.8 68 0.0015 28.7 3.3 31 44-77 3-35 (217)
349 KOG3062 RNA polymerase II elon 26.7 84 0.0018 28.5 3.6 29 43-71 1-31 (281)
350 cd00885 cinA Competence-damage 26.6 1.5E+02 0.0032 25.4 5.2 46 334-379 21-68 (170)
351 PTZ00386 formyl tetrahydrofola 26.6 97 0.0021 32.1 4.5 31 42-72 67-104 (625)
352 KOG1534 Putative transcription 26.5 65 0.0014 28.9 2.9 28 44-72 7-34 (273)
353 PRK06731 flhF flagellar biosyn 26.4 1.2E+02 0.0025 28.4 4.8 33 42-74 74-108 (270)
354 COG0466 Lon ATP-dependent Lon 26.3 65 0.0014 34.2 3.3 62 12-76 322-385 (782)
355 PHA02575 1 deoxynucleoside mon 26.3 62 0.0014 29.2 2.9 24 45-72 2-27 (227)
356 PRK11914 diacylglycerol kinase 26.3 77 0.0017 29.9 3.7 14 293-306 9-22 (306)
357 cd03274 ABC_SMC4_euk Eukaryoti 26.2 70 0.0015 28.4 3.2 23 43-65 25-49 (212)
358 PRK03731 aroL shikimate kinase 26.0 76 0.0016 26.8 3.3 21 45-65 4-26 (171)
359 TIGR01166 cbiO cobalt transpor 25.9 69 0.0015 27.6 3.1 25 41-65 16-42 (190)
360 PRK09518 bifunctional cytidyla 25.9 63 0.0014 34.7 3.3 23 44-66 2-26 (712)
361 PF12147 Methyltransf_20: Puta 25.9 1.9E+02 0.0041 27.3 5.9 118 41-173 135-261 (311)
362 cd03259 ABC_Carb_Solutes_like 25.8 69 0.0015 28.2 3.1 25 41-65 24-50 (213)
363 COG1131 CcmA ABC-type multidru 25.7 50 0.0011 31.1 2.3 27 41-67 29-57 (293)
364 PRK12727 flagellar biosynthesi 25.6 1.4E+02 0.0031 30.8 5.5 27 42-68 349-377 (559)
365 TIGR02667 moaB_proteo molybden 25.6 1.4E+02 0.0031 25.3 4.9 46 333-378 23-72 (163)
366 COG4133 CcmA ABC-type transpor 25.5 64 0.0014 28.4 2.7 29 41-69 26-56 (209)
367 PF03266 NTPase_1: NTPase; In 25.5 96 0.0021 26.5 3.8 27 46-72 2-30 (168)
368 PF00994 MoCF_biosynth: Probab 25.4 84 0.0018 25.9 3.4 46 334-379 19-66 (144)
369 PRK12378 hypothetical protein; 25.4 2.3E+02 0.0051 25.7 6.4 55 233-289 52-112 (235)
370 cd03278 ABC_SMC_barmotin Barmo 25.3 69 0.0015 28.1 3.0 23 45-67 24-48 (197)
371 PF01709 Transcrip_reg: Transc 25.3 1.1E+02 0.0024 27.8 4.3 55 233-289 50-111 (234)
372 PRK14709 hypothetical protein; 25.3 53 0.0011 33.3 2.5 21 49-69 213-233 (469)
373 KOG1370 S-adenosylhomocysteine 25.3 2.3E+02 0.0051 26.9 6.4 81 279-382 200-282 (434)
374 PRK08338 2-oxoglutarate ferred 25.2 4.2E+02 0.0092 22.4 12.5 143 46-252 3-148 (170)
375 PRK10463 hydrogenase nickel in 25.1 1.9E+02 0.004 27.3 5.9 28 41-68 102-131 (290)
376 PRK08356 hypothetical protein; 25.1 1E+02 0.0022 26.8 4.1 27 43-73 5-33 (195)
377 COG1832 Predicted CoA-binding 25.1 96 0.0021 25.6 3.5 39 34-73 8-47 (140)
378 PRK13949 shikimate kinase; Pro 25.1 76 0.0016 27.1 3.1 23 44-66 2-26 (169)
379 PRK13540 cytochrome c biogenes 25.0 75 0.0016 27.7 3.2 25 41-65 25-51 (200)
380 COG1245 Predicted ATPase, RNas 25.0 69 0.0015 32.3 3.1 26 40-65 97-124 (591)
381 PRK02496 adk adenylate kinase; 25.0 80 0.0017 27.1 3.3 21 45-65 3-25 (184)
382 PRK13537 nodulation ABC transp 24.9 51 0.0011 31.2 2.2 26 41-66 31-58 (306)
383 PRK00110 hypothetical protein; 24.8 1.7E+02 0.0038 26.7 5.5 55 233-289 54-115 (245)
384 PRK12338 hypothetical protein; 24.7 71 0.0015 30.5 3.1 23 43-65 4-28 (319)
385 PRK05537 bifunctional sulfate 24.6 1.5E+02 0.0033 30.8 5.8 54 17-70 357-422 (568)
386 cd03260 ABC_PstB_phosphate_tra 24.4 78 0.0017 28.2 3.2 25 41-65 24-50 (227)
387 COG1737 RpiR Transcriptional r 24.4 2.5E+02 0.0054 26.1 6.8 14 234-247 42-55 (281)
388 PRK01215 competence damage-ind 24.3 1.6E+02 0.0035 27.3 5.3 47 333-379 24-72 (264)
389 cd02021 GntK Gluconate kinase 24.3 59 0.0013 26.7 2.3 20 46-65 2-23 (150)
390 KOG0460 Mitochondrial translat 24.3 53 0.0012 31.6 2.1 22 51-72 64-85 (449)
391 cd03294 ABC_Pro_Gly_Bertaine T 24.2 75 0.0016 29.3 3.2 26 41-66 48-75 (269)
392 PRK10744 pstB phosphate transp 24.2 61 0.0013 29.7 2.6 26 41-66 37-64 (260)
393 cd03232 ABC_PDR_domain2 The pl 24.0 74 0.0016 27.6 2.9 23 41-63 31-55 (192)
394 PRK06407 ornithine cyclodeamin 23.8 2E+02 0.0042 27.2 5.9 96 268-380 88-193 (301)
395 TIGR02768 TraA_Ti Ti-type conj 23.6 87 0.0019 33.8 3.9 30 44-73 369-400 (744)
396 TIGR00073 hypB hydrogenase acc 23.6 2.2E+02 0.0049 24.9 6.0 23 41-63 20-44 (207)
397 PRK13764 ATPase; Provisional 23.6 1.3E+02 0.0028 31.6 4.9 31 42-72 256-288 (602)
398 PF14207 DpnD-PcfM: DpnD/PcfM- 23.6 89 0.0019 20.7 2.5 22 353-374 18-39 (48)
399 smart00382 AAA ATPases associa 23.5 67 0.0015 25.0 2.4 26 44-69 3-30 (148)
400 PRK13948 shikimate kinase; Pro 23.5 92 0.002 27.0 3.4 25 42-66 9-35 (182)
401 PRK15177 Vi polysaccharide exp 23.3 82 0.0018 27.9 3.1 25 41-65 11-37 (213)
402 cd03273 ABC_SMC2_euk Eukaryoti 23.2 91 0.002 28.4 3.5 26 42-67 24-51 (251)
403 TIGR02533 type_II_gspE general 23.1 93 0.002 31.7 3.8 27 34-60 233-261 (486)
404 PRK13976 thymidylate kinase; P 23.1 84 0.0018 28.0 3.1 27 46-72 3-33 (209)
405 cd03110 Fer4_NifH_child This p 23.0 61 0.0013 27.6 2.2 17 49-65 8-24 (179)
406 cd03238 ABC_UvrA The excision 23.0 85 0.0018 27.1 3.1 21 41-61 19-41 (176)
407 PRK10908 cell division protein 23.0 84 0.0018 27.9 3.2 25 41-65 26-52 (222)
408 cd03222 ABC_RNaseL_inhibitor T 22.9 91 0.002 26.9 3.2 26 41-66 23-50 (177)
409 cd07424 MPP_PrpA_PrpB PrpA and 22.8 5E+02 0.011 22.7 8.1 68 268-341 2-72 (207)
410 PF05729 NACHT: NACHT domain 22.8 1.1E+02 0.0024 25.1 3.7 25 45-69 2-28 (166)
411 PF01202 SKI: Shikimate kinase 22.8 61 0.0013 27.2 2.1 18 52-69 3-20 (158)
412 COG2804 PulE Type II secretory 22.5 1.6E+02 0.0034 30.0 5.1 30 36-65 251-282 (500)
413 TIGR01184 ntrCD nitrate transp 22.4 86 0.0019 28.1 3.1 24 42-65 10-35 (230)
414 PF12128 DUF3584: Protein of u 22.3 94 0.002 35.7 4.0 20 45-64 19-40 (1201)
415 TIGR02524 dot_icm_DotB Dot/Icm 22.3 94 0.002 30.3 3.5 26 41-66 132-159 (358)
416 cd03221 ABCF_EF-3 ABCF_EF-3 E 22.2 89 0.0019 25.7 2.9 25 41-65 24-50 (144)
417 PRK09493 glnQ glutamine ABC tr 22.2 87 0.0019 28.2 3.1 25 41-65 25-51 (240)
418 cd03263 ABC_subfamily_A The AB 22.1 89 0.0019 27.6 3.1 25 41-65 26-52 (220)
419 PRK13539 cytochrome c biogenes 22.1 91 0.002 27.4 3.2 25 41-65 26-52 (207)
420 COG2812 DnaX DNA polymerase II 22.1 4.2E+02 0.0091 27.2 8.1 54 241-302 100-157 (515)
421 COG1125 OpuBA ABC-type proline 21.8 37 0.00081 31.4 0.6 26 42-67 26-53 (309)
422 cd01120 RecA-like_NTPases RecA 21.8 1.2E+02 0.0027 24.6 3.8 28 46-73 2-31 (165)
423 cd03272 ABC_SMC3_euk Eukaryoti 21.7 86 0.0019 28.2 3.0 24 43-66 23-48 (243)
424 PRK14238 phosphate transporter 21.7 80 0.0017 29.2 2.8 26 41-66 48-75 (271)
425 cd03250 ABCC_MRP_domain1 Domai 21.7 95 0.0021 27.1 3.2 25 41-65 29-55 (204)
426 COG2759 MIS1 Formyltetrahydrof 21.6 83 0.0018 31.4 2.9 31 42-72 51-87 (554)
427 cd03237 ABC_RNaseL_inhibitor_d 21.6 92 0.002 28.4 3.2 24 42-65 24-49 (246)
428 cd03240 ABC_Rad50 The catalyti 21.6 96 0.0021 27.3 3.2 24 43-66 22-47 (204)
429 PRK11248 tauB taurine transpor 21.6 92 0.002 28.5 3.2 25 41-65 25-51 (255)
430 PRK10247 putative ABC transpor 21.5 94 0.002 27.7 3.2 25 41-65 31-57 (225)
431 PRK13652 cbiO cobalt transport 21.5 90 0.0019 29.0 3.1 25 41-65 28-54 (277)
432 PF03029 ATP_bind_1: Conserved 21.4 73 0.0016 29.0 2.4 21 52-72 7-27 (238)
433 TIGR03574 selen_PSTK L-seryl-t 21.3 1E+02 0.0022 28.0 3.4 27 46-72 2-30 (249)
434 cd03265 ABC_DrrA DrrA is the A 21.2 97 0.0021 27.4 3.2 25 41-65 24-50 (220)
435 cd00820 PEPCK_HprK Phosphoenol 21.1 60 0.0013 25.6 1.5 21 42-62 14-36 (107)
436 PRK00625 shikimate kinase; Pro 21.1 95 0.0021 26.7 3.0 21 46-66 3-25 (173)
437 TIGR03263 guanyl_kin guanylate 21.1 89 0.0019 26.5 2.8 22 44-65 2-25 (180)
438 PF14516 AAA_35: AAA-like doma 21.0 1.9E+02 0.0042 27.6 5.4 33 41-73 29-63 (331)
439 PRK14235 phosphate transporter 21.0 86 0.0019 28.9 2.9 26 41-66 43-70 (267)
440 TIGR00972 3a0107s01c2 phosphat 20.9 97 0.0021 28.0 3.2 25 41-65 25-51 (247)
441 cd03269 ABC_putative_ATPase Th 20.9 98 0.0021 27.1 3.1 25 41-65 24-50 (210)
442 TIGR02788 VirB11 P-type DNA tr 20.9 93 0.002 29.5 3.1 31 34-65 136-168 (308)
443 PLN02200 adenylate kinase fami 20.9 1.2E+02 0.0027 27.4 3.8 31 43-76 43-75 (234)
444 cd03267 ABC_NatA_like Similar 20.8 95 0.0021 27.9 3.1 25 41-65 45-71 (236)
445 PRK13538 cytochrome c biogenes 20.8 99 0.0022 27.0 3.1 26 41-66 25-52 (204)
446 PRK13057 putative lipid kinase 20.8 1.2E+02 0.0025 28.4 3.7 13 371-383 52-64 (287)
447 TIGR03608 L_ocin_972_ABC putat 20.8 96 0.0021 27.0 3.0 25 41-65 22-48 (206)
448 cd03235 ABC_Metallic_Cations A 20.7 91 0.002 27.4 2.9 25 41-65 23-49 (213)
449 TIGR02881 spore_V_K stage V sp 20.7 79 0.0017 29.0 2.5 27 43-69 42-70 (261)
450 PRK11629 lolD lipoprotein tran 20.7 98 0.0021 27.7 3.1 25 41-65 33-59 (233)
451 COG1341 Predicted GTPase or GT 20.7 92 0.002 30.6 3.0 32 42-73 72-105 (398)
452 PRK05057 aroK shikimate kinase 20.7 1.1E+02 0.0023 26.2 3.2 22 44-65 5-28 (172)
453 TIGR03819 heli_sec_ATPase heli 20.6 1.2E+02 0.0026 29.3 3.8 47 18-65 154-202 (340)
454 cd03216 ABC_Carb_Monos_I This 20.6 1E+02 0.0022 25.9 3.1 26 41-66 24-51 (163)
455 PF00009 GTP_EFTU: Elongation 20.5 87 0.0019 26.9 2.6 24 42-65 2-27 (188)
456 PF05180 zf-DNL: DNL zinc fing 20.4 62 0.0014 23.0 1.3 19 130-148 42-64 (66)
457 TIGR03864 PQQ_ABC_ATP ABC tran 20.4 1E+02 0.0022 27.7 3.2 25 41-65 25-51 (236)
458 PRK13541 cytochrome c biogenes 20.3 1E+02 0.0023 26.7 3.1 25 41-65 24-50 (195)
459 cd03247 ABCC_cytochrome_bd The 20.3 1.1E+02 0.0023 26.1 3.2 26 41-66 26-53 (178)
460 PRK14274 phosphate ABC transpo 20.3 1.1E+02 0.0023 28.0 3.3 26 41-66 36-63 (259)
461 PRK10078 ribose 1,5-bisphospho 20.2 77 0.0017 27.3 2.3 21 45-65 4-26 (186)
462 TIGR01650 PD_CobS cobaltochela 20.2 76 0.0017 30.4 2.3 26 45-70 66-93 (327)
463 PRK08618 ornithine cyclodeamin 20.2 3.4E+02 0.0074 25.8 6.9 109 267-393 96-215 (325)
464 COG0283 Cmk Cytidylate kinase 20.2 95 0.0021 27.9 2.7 25 43-67 4-30 (222)
465 cd03213 ABCG_EPDR ABCG transpo 20.0 1E+02 0.0022 26.8 3.0 25 41-65 33-59 (194)
466 PF10623 PilI: Plasmid conjuga 20.0 3.7E+02 0.008 19.8 5.5 47 255-302 5-52 (83)
No 1
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=100.00 E-value=1.8e-66 Score=517.80 Aligned_cols=368 Identities=27% Similarity=0.485 Sum_probs=308.7
Q ss_pred eeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeeccCchhh
Q 015701 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (402)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~g~~~ 82 (402)
+++|+||+++++||++++|+++|+|++++++++++++ +.++|+||||||||||++||+++|+..|.++.++|++|.|.
T Consensus 64 d~vv~sp~i~~~~p~~~~a~~~~i~i~~~~e~~~~~~--~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~~~ 141 (433)
T TIGR01087 64 DLVVKSPGIPPDHPLVQAAAKRGIPVVGDIELFLRLV--PLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGTPA 141 (433)
T ss_pred CEEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCHHH
Confidence 6899999999999999999999999999999999887 56899999999999999999999999999999999999984
Q ss_pred hhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEEe
Q 015701 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162 (402)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~n 162 (402)
..... ..+.+++|+|+|+++++.+.. ++|+++|||||++||+++|+|+|+|+++|.++++..++++.+|+|
T Consensus 142 ~~~~~--------~~~~~~~V~E~~~~~l~~~~~-~~p~iaViTNI~~DHld~~gs~e~~~~~K~~i~~~~~~~~~~i~n 212 (433)
T TIGR01087 142 LEVLD--------QEGAELYVLELSSFQLETTES-LRPEIALILNISEDHLDWHGSFEDYVAAKLKIFARQTEGDVAVLN 212 (433)
T ss_pred HHHHh--------ccCCCEEEEEcChhHhcCCcc-cCCCEEEEecCChhHhcccCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 43221 135688999999998886654 799999999999999999999999999999999988888999999
Q ss_pred CCChhhHHHhhcccccEEEeecCCCceeccccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHcCCCH
Q 015701 163 FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242 (402)
Q Consensus 163 ~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~lgi~~ 242 (402)
.||+.+..+......++++|+...... ..+.....+..+....+.++++|.||++|+++|+ ++++.+|++.
T Consensus 213 ~dd~~~~~~~~~~~~~~~~~g~~~~~~-------~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAi--a~a~~lgi~~ 283 (433)
T TIGR01087 213 ADDPRFARLAQKSKAQVIWFSVEKDAE-------RGLCIRDGGLYLKPNDLEGSLLGLHNAENILAAI--ALAKSLGLNL 283 (433)
T ss_pred CCCHHHHHhhhhcCceEEEEeCCccCC-------CceEEECCEEEEeccccccCCCcHHHHHHHHHHH--HHHHHcCCCH
Confidence 999988777665566788888542211 0111111111111112468999999999999999 8999999999
Q ss_pred HHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccCCCcEEEEEcCCCCcCCCCCCcchHhhhhccc
Q 015701 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322 (402)
Q Consensus 243 ~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~ 322 (402)
+.|+++|++|++++||||++. ..+++.+|||++||||+|+.++++.++ +++++|+|++.+.. .++++.+.+.
T Consensus 284 ~~i~~~L~~f~g~~~R~e~v~-~~~g~~~idD~~atn~~a~~~al~~~~-~~ii~I~Gg~~~~~------d~~~~~~~l~ 355 (433)
T TIGR01087 284 EAILEALRSFKGLPHRLEYVG-QKNGVHFYNDSKATNVHATLAALSAFD-NPVILIVGGDDKGA------DFSPLAPAAA 355 (433)
T ss_pred HHHHHHHHhCCCCCCceEEEE-EECCEEEEEcCCCCCHHHHHHHHHhCC-CCEEEEEcCCCCCC------CHHHHHHHHH
Confidence 999999999999999999996 357899999988999999999999995 47899999774432 3566666664
Q ss_pred c-ccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCcccccccChhHHhHHHHHHHh
Q 015701 323 H-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAF 400 (402)
Q Consensus 323 ~-~d~vi~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~~s~~~~~~~~~r~~~~~~~~~ 400 (402)
. ++.+++.|.....+.+.++..+. .+..++++++|++.+.+.+++||+||++|++.||++|+||++||+.|+++|+
T Consensus 356 ~~~~~v~~~G~~~~~l~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~gdiVLlspa~as~d~f~~~~~RG~~F~~~v~ 432 (433)
T TIGR01087 356 GKVKAVLAIGEDAAKIAPLLKEAGL--SVYLVESLEEAVQAAREVASPGDVVLLSPACASFDQFKSYEERGEKFKELVR 432 (433)
T ss_pred hhCCEEEEECCCHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHhcCCCCEEEECccchhhccccCHHHHHHHHHHHHh
Confidence 3 56888999999888888865432 3456789999999999999999999999999999999999999999999986
No 2
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.7e-66 Score=514.43 Aligned_cols=372 Identities=27% Similarity=0.403 Sum_probs=306.3
Q ss_pred ceeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeeccCchh
Q 015701 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (402)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~g~~ 81 (402)
.+++|+||+++++||++++|+++++|+++++|++++.. ++.++|+||||||||||++||+++|+..|.++.++||+|.|
T Consensus 64 ~d~vV~SPgI~~~~p~~~~a~~~gi~v~~e~el~~~~~-~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GniG~p 142 (454)
T PRK01368 64 LDKIVLSPGIPLTHEIVKIAKNFNIPITSDIDLLFEKS-KNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGVP 142 (454)
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCCceecHHHHHHHHh-cCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccCCHH
Confidence 36899999999999999999999999999999998876 46789999999999999999999999999999999999998
Q ss_pred hhhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEE
Q 015701 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (402)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~ 161 (402)
.... ..+.+++|+|+|+++++.... ++|+++|||||++||+|+|+|+|+|+++|.++++.+++.+.+|+
T Consensus 143 ~l~~----------~~~~~~~VlE~ss~ql~~~~~-~~P~iavitNI~~DHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vl 211 (454)
T PRK01368 143 ALQA----------KASKDGYVLELSSFQLDLVKT-FTAKIAVLLNITPDHLDRHQDMDGYIAAKSKIFDRMDKDSYAVI 211 (454)
T ss_pred Hhcc----------cCCCCEEEEEcCchhhccccc-cCCCEEEEecCChhHhhccCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 6432 123477999999999876653 89999999999999999999999999999999998888899999
Q ss_pred eCCChhhHHHhhcc----cccEEEeecCCCce--eccccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHH
Q 015701 162 PFGNQHLNEAIKGH----RFNLAWIGAFPGVK--IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG 235 (402)
Q Consensus 162 n~dd~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~ 235 (402)
|.||+.++.+.... ..++++|+...... +........+..... ... ...+.++++|.||++|+++|+ +++
T Consensus 212 n~Dd~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~l~G~hn~~Na~aAi--a~~ 287 (454)
T PRK01368 212 NIDNDYCREIFIKLQQEQRIKLIPFSVTKILENGISVVDDKISDNFFDD-ISF-KLPFNKNLQGKHNCENIAASY--AVA 287 (454)
T ss_pred eCCcHHHHHHHHHhhcccCceEEEEeCCcccCCCcEEECCEEEEEecCC-cce-EEEecCCCCchhhHHHHHHHH--HHH
Confidence 99999887765332 23667777532110 000000011111111 001 112357899999999999999 899
Q ss_pred HHcCCCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccCCCcEEEEEcCCCCcCCCCCCcchH
Q 015701 236 LDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315 (402)
Q Consensus 236 ~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~ 315 (402)
+.+|++.+.|.++|++|+++|||||++. ..+++.+|||+++|||+|++++++.++ ++++|+|++ +++ ..+.
T Consensus 288 ~~lgi~~~~i~~~L~~F~~~~~Rle~v~-~~~gv~~i~DS~atN~~a~~~al~~~~--~i~lI~Gg~-dk~-----~~~~ 358 (454)
T PRK01368 288 KIIGVEPKKILESISSFQSLPHRMQYIG-SINNISFYNDSKATNAISAVQSIKALD--NIYWLAGGI-PKE-----GGIE 358 (454)
T ss_pred HHcCCCHHHHHHHHHhCCCCCcceEEEE-EECCeEEEECCCCCCHHHHHHHHHhcC--CeEEEeccc-CCC-----CCHH
Confidence 9999999999999999999999999997 367899999999999999999999994 689999987 333 2466
Q ss_pred hhhhccccccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCC----CEEEEcCCCcccccccChhHH
Q 015701 316 KLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG----DAIVLSPGCASFDEFRNFEHR 391 (402)
Q Consensus 316 ~~~~~l~~~d~vi~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~----d~vll~~G~~s~~~~~~~~~r 391 (402)
.+.+.+.....+++.|.+.+.+.+.++.. .++..++++++|++.+.+.+++| |+|||+|||.||++|+||++|
T Consensus 359 ~L~~~~~~v~~v~~~g~~~~~l~~~~~~~---~~~~~~~~l~~Av~~a~~~a~~g~~~~d~VLlSPacaSfD~f~~ye~R 435 (454)
T PRK01368 359 EIKPYFSKIKKAYFYGQAKEIFANTAKNI---VDFVICDNLEQAFDLAYKDAVGDNAEVKNILLAPSCSSYDQFKNFEER 435 (454)
T ss_pred HHHHHHHhhcEEEEECcCHHHHHHHhhcC---CCEEEcCCHHHHHHHHHHHhcCCCCCCCEEEeChhhhccccccCHHHH
Confidence 77766555667778899998888887542 13556789999999999999998 799999999999999999999
Q ss_pred hHHHHHHHhc
Q 015701 392 GMVFQELAFS 401 (402)
Q Consensus 392 ~~~~~~~~~~ 401 (402)
|+.|+++|++
T Consensus 436 G~~F~~~v~~ 445 (454)
T PRK01368 436 GELFIKLSQK 445 (454)
T ss_pred HHHHHHHHHH
Confidence 9999999975
No 3
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=9.4e-66 Score=514.04 Aligned_cols=373 Identities=29% Similarity=0.479 Sum_probs=306.0
Q ss_pred ceeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCC-CCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeeccCch
Q 015701 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80 (402)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~-~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~g~ 80 (402)
.+++|+||+++|+||++++|+++++|++++++++.++.. .+.++|+||||||||||++||+++|+..|.++.+.||+|.
T Consensus 68 ~d~vv~spgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~GniG~ 147 (445)
T PRK04308 68 FDILALSPGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGT 147 (445)
T ss_pred CCEEEECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCeEEeCCccH
Confidence 368999999999999999999999999999999988762 1468999999999999999999999999999899999999
Q ss_pred hhhhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEE
Q 015701 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160 (402)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v 160 (402)
|+....... ...+.|++|+|+|+++++.+.. ++|+++|||||++||+++|+|+|+|+++|.++++ +++.+|
T Consensus 148 ~~~~~~~~~-----~~~~~d~~VlE~~~~~l~~~~~-~~p~iaviTNI~~DHld~~~t~e~~~~~K~~i~~---~~~~~i 218 (445)
T PRK04308 148 PVLEAELQR-----EGKKADVWVLELSSFQLENTES-LRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFR---GDGVQV 218 (445)
T ss_pred HHHHHHHhh-----cCCCCcEEEEEeChHHhCcCcc-cCCCEEEEecCChHHhcccCCHHHHHHHHHHHhc---CCCEEE
Confidence 876543210 1235688999999998887654 8999999999999999999999999999999997 368999
Q ss_pred EeCCChhhHHHhhcccccEEEeecCCC--ceeccccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHc
Q 015701 161 LPFGNQHLNEAIKGHRFNLAWIGAFPG--VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI 238 (402)
Q Consensus 161 ~n~dd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~l 238 (402)
+|.|||....+... ..++++|+.... +...... ..+... +.. ......++++|.||++|+++|+ +++..+
T Consensus 219 ~n~dd~~~~~~~~~-~~~v~~~~~~~~~d~~~~~~~--~~~~~~--~~~-~~~~~~l~l~G~hn~~NalaAi--a~a~~l 290 (445)
T PRK04308 219 LNADDAFCRAMKRA-GREVKWFSLEHEADFWLERET--GRLKQG--NED-LIATQDIPLQGLHNAANVMAAV--ALCEAV 290 (445)
T ss_pred EeCCcHHHHHHhhc-CCcEEEecCCCCCceeEeccC--CEEEEc--Cce-eeehhccCCcChhhHHHHHHHH--HHHHHc
Confidence 99999988776543 456778875321 1111100 112221 111 1112468999999999999999 889999
Q ss_pred CCCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccCCCcEEEEEcCCCCcCCCCCCcchHhhh
Q 015701 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318 (402)
Q Consensus 239 gi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~ 318 (402)
|++++.++++|++|+++|||||++.. .+++++|||||+|||+|++++++.+. +++++|+|++.+.++ +.++.
T Consensus 291 gi~~~~i~~~L~~f~~~~~R~e~~~~-~~~~~~iDDs~~~n~~s~~~al~~~~-~~~i~IlGg~~~~~~------~~~~~ 362 (445)
T PRK04308 291 GLPREALLEHVKTFQGLPHRVEKIGE-KNGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGKGQD------FTPLR 362 (445)
T ss_pred CCCHHHHHHHHhhCCCCCCceEEEEe-eCCeEEEEcCCCCCHHHHHHHHHhCC-CCEEEEeCCCCCCCC------HHHHH
Confidence 99999999999999999999999963 57899999999999999999999995 478999998855443 44454
Q ss_pred hcccc-ccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCcccccccChhHHhHHHHH
Q 015701 319 EPLNH-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397 (402)
Q Consensus 319 ~~l~~-~d~vi~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~~s~~~~~~~~~r~~~~~~ 397 (402)
+.+.. +|.++++|.+.+.+.+.++..+. .+..+++.++|++.+.+.++++|+||++|+++||++|+||++||+.|++
T Consensus 363 ~~l~~~~~~vil~G~~~~~l~~~l~~~~~--~~~~~~~~e~a~~~~~~~~~~~d~VL~sp~~~S~d~f~~~~~Rg~~F~~ 440 (445)
T PRK04308 363 DALAGKAKGVFLIGVDAPQIRRDLDGCGL--NLTDCATLEEAVQRAYAQAEAGDIVLLSPACASFDMFKGYAHRSEVFIE 440 (445)
T ss_pred HHHHHhCcEEEEECCCHHHHHHHHHhcCC--CeEecCCHHHHHHHHHHhCCCCCEEEEChhhhhhccccCHHHHHHHHHH
Confidence 44443 68899999998888887754332 3456789999999999999999999999999999999999999999999
Q ss_pred HHhc
Q 015701 398 LAFS 401 (402)
Q Consensus 398 ~~~~ 401 (402)
+|++
T Consensus 441 ~v~~ 444 (445)
T PRK04308 441 AFKA 444 (445)
T ss_pred HHHh
Confidence 9985
No 4
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.8e-65 Score=511.03 Aligned_cols=368 Identities=29% Similarity=0.434 Sum_probs=303.8
Q ss_pred eeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeeccCchhh
Q 015701 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (402)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~g~~~ 82 (402)
+++|+||+++++||++++|+++++|++++++++++.+ +.++|+||||||||||++||+++|+..|.++.++|++|.|.
T Consensus 70 d~vV~sp~i~~~~p~~~~a~~~~i~i~~~~el~~~~~--~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p~ 147 (448)
T PRK03803 70 SEIIISPGLALDTPALRAAAAMGIEVIGDIELFAREA--KAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTPA 147 (448)
T ss_pred CEEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhc--CCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHHH
Confidence 5899999999999999999999999999999999887 46899999999999999999999999999999999999987
Q ss_pred hhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEEe
Q 015701 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162 (402)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~n 162 (402)
.... ..+.+++|+|+|+++++.++. ++|+++|||||++||+++|+|+|+|+++|.++++. .+.+|+|
T Consensus 148 ~~~~---------~~~~~~~V~E~ss~~l~~~~~-~~P~iaVITNI~~DHld~~gs~e~~~~~K~~i~~~---~~~~V~n 214 (448)
T PRK03803 148 LDLL---------SDDPELYVLELSSFQLETTHS-LNAEVATVLNISEDHMDRYSDLEAYHQAKHRIYRG---AKQVVFN 214 (448)
T ss_pred HHHh---------cCCCCEEEEEcChhhhCcCcc-cCccEEEEecCChhHcccCCCHHHHHHHHHHHHhC---CCeEEEe
Confidence 4321 123578999999999887765 89999999999999999999999999999999984 4789999
Q ss_pred CCChhhHHHhhcccccEEEeecCCC----ceeccccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHc
Q 015701 163 FGNQHLNEAIKGHRFNLAWIGAFPG----VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI 238 (402)
Q Consensus 163 ~dd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~l 238 (402)
.||+.++.+... ..++++|+.... +.+... ....+.... +.. .+....++++|.||++|+++|+ ++++.+
T Consensus 215 ~dd~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~-~~~-~~~~~~l~l~G~Hn~~NalaAi--a~a~~l 288 (448)
T PRK03803 215 RDDALTRPLVPD-NQPCLSFGLNAPDFDEWGLREG-DGETYLAHG-FER-LMPVRELKLRGSHNLANALAAL--ALGEAA 288 (448)
T ss_pred CCCHHHHHHhhc-CCcEEEEeCCCCCcCceEEEec-CCeEEEEeC-Cce-EEehhccCCCCHHHHHHHHHHH--HHHHHc
Confidence 999988776543 245777775311 111100 111122111 111 1122468999999999999999 899999
Q ss_pred CCCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccC---CCcEEEEEcCCCCcCCCCCCcchH
Q 015701 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFE 315 (402)
Q Consensus 239 gi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~g~~~~~~~~~~~~~~~ 315 (402)
|++++.|.++|++|+++|||||++.. .+++.+|||+|||||+|+.++++.+. ++|+++|+|++.+.. .++
T Consensus 289 gi~~~~i~~~L~~f~g~~~R~e~v~~-~~gv~~idDs~atN~~a~~~al~~l~~~~~~~iilI~Gg~~k~~------d~~ 361 (448)
T PRK03803 289 GLPKEAMLEVLRTFTGLPHRCEWVRE-VAGVDYYNDSKGTNVGATVAAIEGLGAHIQGKLVLIAGGDGKGA------DFS 361 (448)
T ss_pred CCCHHHHHHHHhhCCCCCCceEEEEE-eCCeEEEEcCCcCCHHHHHHHHHhhhhcCCCCEEEEECCCCCCC------CHH
Confidence 99999999999999999999999963 57889999999999999999999984 257999999875422 355
Q ss_pred hhhhcccc-ccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCcccccccChhHHhHH
Q 015701 316 KLIEPLNH-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMV 394 (402)
Q Consensus 316 ~~~~~l~~-~d~vi~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~~s~~~~~~~~~r~~~ 394 (402)
++.+.+.+ ++.++++|...+.+.+.++.. ..+..++++++|++.+.+.+++||+||++|+|+||++|+||++||..
T Consensus 362 ~l~~~l~~~~~~vil~G~~~~~i~~~l~~~---~~~~~~~~~~~a~~~a~~~a~~gdvVL~SPa~aSfd~f~~~~~RG~~ 438 (448)
T PRK03803 362 PLREPVAKYVRAVVLIGRDADKIAAALGGA---VPLVRVATLAEAVAKAAELAQAGDIVLLSPACASLDMFKNFEARGDD 438 (448)
T ss_pred HHHHHHHhhCCEEEEECCCHHHHHHHHhcC---CCEEEeCCHHHHHHHHHHhCCCCCEEEeCchhhcccccCCHHHHHHH
Confidence 66655543 688999999998888877532 13556789999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 015701 395 FQELAFS 401 (402)
Q Consensus 395 ~~~~~~~ 401 (402)
|+++|++
T Consensus 439 F~~~v~~ 445 (448)
T PRK03803 439 FRQAVEA 445 (448)
T ss_pred HHHHHHH
Confidence 9999975
No 5
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.3e-65 Score=510.81 Aligned_cols=372 Identities=28% Similarity=0.414 Sum_probs=307.0
Q ss_pred ceeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeeccCchh
Q 015701 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (402)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~g~~ 81 (402)
.+++|+||+++++||++++|++.++|++++++++.+.. +.++|+||||||||||++||+++|+..|.++.++||+|.|
T Consensus 78 ~dlVV~Spgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~--~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~~gniG~p 155 (458)
T PRK01710 78 FDVIFKTPSMRIDSPELVKAKEEGAYITSEMEEFIKYC--PAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGNIGTP 155 (458)
T ss_pred CCEEEECCCCCCCchHHHHHHHcCCcEEechHHhhhhc--CCCEEEEECCCCHHHHHHHHHHHHHhCCCCEEECCccChh
Confidence 36899999999999999999999999999999887765 5689999999999999999999999999998899999999
Q ss_pred hhhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEE
Q 015701 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (402)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~ 161 (402)
+..... ...+.+++|+|+|++++.... ++|+++|||||++||+++|+|+|+|+++|.++++.+++++.+|+
T Consensus 156 ~~~~~~-------~~~~~~~~VlE~~~~~~~~~~--~~PdiaViTNI~~dHld~~~s~e~~~~aK~~i~~~~~~~~~~v~ 226 (458)
T PRK01710 156 LFSNIE-------EIKEEDKVVLELSSFQLMTMD--VSPEVAVVTNLSPNHLDVHKDMEEYIDAKKNIFKYQSENDLLVL 226 (458)
T ss_pred HHHHHh-------hCCCCCEEEEEcCccccccCC--CCCCEEEEecCChhhccccCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 864321 122467899999998776553 69999999999999999999999999999999998888899999
Q ss_pred eCCChhhHHHhhcccccEEEeecCCCc---eeccccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHc
Q 015701 162 PFGNQHLNEAIKGHRFNLAWIGAFPGV---KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI 238 (402)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~l 238 (402)
|.||+.+..+......++++|+...+. .+.. ...+... +... ...+.++++|.||++|+++|+ +++..+
T Consensus 227 n~Dd~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~---~~~~~~~--~~~~-~~~~~l~l~G~hnv~NalaA~--a~a~~~ 298 (458)
T PRK01710 227 NKDNEITNGMEKEAKGDVVKFSRKEKVYEGAYLK---NGKLYIR--GKEV-CKKDDIKLKGMHNVENLLAAF--CAVNDD 298 (458)
T ss_pred eCCcHHHHHHHhhcCCcEEEEeCCCCCCCceEEe---CCEEEEc--CceE-EEhhhcCCccHhHHHHHHHHH--HHHHhC
Confidence 999998877765444567788753211 0100 0112221 1111 112478999999999999999 777776
Q ss_pred CCCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccCCCcEEEEEcCCCCcCCCCCCcchHhhh
Q 015701 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318 (402)
Q Consensus 239 gi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~ 318 (402)
++++.|.++|++|++++||||++.. .+|+.+|||+|++||.||.++++.+++ ++++|+|+. ++ ...|++++
T Consensus 299 -i~~~~i~~~L~~f~~~~~R~e~~~~-~~g~~~i~Dsy~~np~s~~~al~~~~~-~~i~IlGg~-~~-----~~~~~~l~ 369 (458)
T PRK01710 299 -VSIESMKKVATTFSGVEHRCEFVRE-INGVKYYNDSIASSPTRTLAGLKAFEK-PVILIAGGY-DK-----KIPFEPLA 369 (458)
T ss_pred -CCHHHHHHHHHhCCCCCcceEEEEE-ECCEEEecccccCCHHHHHHHHHhCCC-CEEEEeCCc-CC-----CCCHHHHH
Confidence 9999999999999999999999863 578999999999999999999999965 689999953 22 23688888
Q ss_pred hccc-cccEEEEeCCChHHHHHHHHh----CCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCcccccccChhHHhH
Q 015701 319 EPLN-HHRCVITFGYSGVLIWKTLVN----NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393 (402)
Q Consensus 319 ~~l~-~~d~vi~~g~~~~~~~~~l~~----~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~~s~~~~~~~~~r~~ 393 (402)
+.+. ..+.++++|+....+.+.++. .+...++..+.+.++|++.+.+.+++||+||++|||.||++|+||++||.
T Consensus 370 ~~~~~~~~~vi~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gd~VLlspa~aS~d~f~~~~~RG~ 449 (458)
T PRK01710 370 EEGYEKIKTLILMGATKNKIKEAFEKVISEKGIDIPIVIVNSLEEAVKVAKEIAEKGDIVTLSPACASFDMFPNFEIRGN 449 (458)
T ss_pred HHHHhhccEEEEECCCHHHHHHHHhhcccccCCCcceEEcCCHHHHHHHHHHhCCCCCEEEeChhhcccccccCHHHHHH
Confidence 7654 378999999998888887752 22212355678999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 015701 394 VFQELAFS 401 (402)
Q Consensus 394 ~~~~~~~~ 401 (402)
.|+++|++
T Consensus 450 ~F~~~v~~ 457 (458)
T PRK01710 450 KFKEIVNN 457 (458)
T ss_pred HHHHHHHh
Confidence 99999975
No 6
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.9e-65 Score=492.78 Aligned_cols=370 Identities=29% Similarity=0.471 Sum_probs=316.7
Q ss_pred eeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeeccCchhh
Q 015701 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (402)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~g~~~ 82 (402)
.++|.||.++++||.+++|+..|++++.+++++.+.. ...|+|+||||||||||++||++||+..|+++.++||+|.|.
T Consensus 71 d~vV~SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~-~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~ 149 (448)
T COG0771 71 DLVVKSPGIPPTHPLVEAAKAAGIEIIGDIELFYRLS-GEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPA 149 (448)
T ss_pred CEEEECCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhc-CCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccH
Confidence 6889999999999999999999999999999999975 467799999999999999999999999999999999999998
Q ss_pred hhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEEe
Q 015701 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162 (402)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~n 162 (402)
...... ..+.|+.|+|+|+++++.+.. ++|++++||||++||+|||+|+|+|..+|.+++.+..+ ++|+|
T Consensus 150 l~~~~~-------~~~~d~~VlElSSfQL~~~~~-~~P~iavilNi~~DHLD~H~s~e~Y~~aK~~i~~~~~~--~~Vin 219 (448)
T COG0771 150 LELLEQ-------AEPADVYVLELSSFQLETTSS-LRPEIAVILNISEDHLDRHGSMENYAAAKLRILEGQTE--VAVIN 219 (448)
T ss_pred HHhhcc-------cCCCCEEEEEccccccccCcc-CCccEEEEecCCHHHhhhccCHHHHHHHHHHHHcCCcc--EEEEe
Confidence 876531 345778999999999998875 89999999999999999999999999999999997654 99999
Q ss_pred CCChhhHHHhhc-ccccEEEeecCCCce--e-ccccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHc
Q 015701 163 FGNQHLNEAIKG-HRFNLAWIGAFPGVK--I-DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI 238 (402)
Q Consensus 163 ~dd~~~~~~~~~-~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~l 238 (402)
.||+++..+... ....+.+|+....+. . ..+... . ..+ ..-.....++++|.||+.|+++|+ ++|+.+
T Consensus 220 ~dd~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~---~--~~~-~~i~~~~~l~l~G~hn~~N~lAa~--a~a~~~ 291 (448)
T COG0771 220 ADDAYLKTLADEATKARVIWFSFGEPLADGDYIYDGKL---V--FKG-EKLLPADELKLPGAHNLENALAAL--ALARAL 291 (448)
T ss_pred CCcHHHhhhhhhcccceeEEEEccccccccceeecchh---c--ccc-ccccchhhcCCcchhhHHHHHHHH--HHHHHc
Confidence 999999888765 344566666543321 0 001100 0 001 111112368999999999999999 999999
Q ss_pred CCCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccCCCcEEEEEcCCCCcCCCCCCcchHhhh
Q 015701 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318 (402)
Q Consensus 239 gi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~ 318 (402)
|++.+.|.++|++|+|+|+|||.+. ..+|+.+|+||.++||.|+..+++.++ +++++|+|+....+ .+..+.
T Consensus 292 gv~~e~i~~~L~~F~gl~HR~e~v~-~~~gv~f~NDSKATN~~At~~AL~~~~-~~v~lI~GG~~Kg~------df~~L~ 363 (448)
T COG0771 292 GVPPEAILEALSSFTGLPHRLEFVG-EKDGVLFINDSKATNVDATLAALSGFD-GPVILIAGGDDKGA------DFSPLA 363 (448)
T ss_pred CCCHHHHHHHHHhCCCCCcceEEEE-ecCCEEEecCCCCCCHHHHHHHHHcCC-CCEEEEECCCCCCC------ChhHHH
Confidence 9999999999999999999999998 589999999999999999999999998 78999999774432 366777
Q ss_pred hcccc-ccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCcccccccChhHHhHHHHH
Q 015701 319 EPLNH-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397 (402)
Q Consensus 319 ~~l~~-~d~vi~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~~s~~~~~~~~~r~~~~~~ 397 (402)
+.+++ ...++++|+....+.+.++..+. ....+.++++|++.+.+.+++||+||++|+|.||++|++|++||..|++
T Consensus 364 ~~~~~~~~~~~~~G~~~~~i~~~l~~~~~--~~~~~~~le~Av~~a~~~a~~gd~VLLSPacASfDqf~~feeRG~~F~~ 441 (448)
T COG0771 364 EILAKVIKKLVLIGEDAEKIAAALKEAGP--SLVICETLEEAVQLARELAQPGDVVLLSPACASFDQFKNFEERGEEFKE 441 (448)
T ss_pred HHhhhcceEEEEeCCCHHHHHHHHHhcCC--ceeecCcHHHHHHHHHHhhcCCCeEEEcccccchhhhcCHHHHHHHHHH
Confidence 77766 55699999999999999977643 3677899999999999999999999999999999999999999999999
Q ss_pred HHhc
Q 015701 398 LAFS 401 (402)
Q Consensus 398 ~~~~ 401 (402)
+++.
T Consensus 442 ~v~~ 445 (448)
T COG0771 442 LVSE 445 (448)
T ss_pred HHHH
Confidence 9874
No 7
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.3e-64 Score=504.05 Aligned_cols=365 Identities=28% Similarity=0.427 Sum_probs=298.7
Q ss_pred ceeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeeccCchh
Q 015701 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (402)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~g~~ 81 (402)
..++|+||+++|+||++++|+++|+|++++++++++.+ +.++|+||||||||||++||+++|+..|.++.++||+|.|
T Consensus 69 ~d~vV~SpgI~~~~p~~~~a~~~gi~i~~~~el~~~~~--~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gniG~~ 146 (438)
T PRK04663 69 ADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWAV--DKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNIGVP 146 (438)
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhc--CCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEcccCHH
Confidence 36899999999999999999999999999999998876 4689999999999999999999999999999999999998
Q ss_pred hhhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEE
Q 015701 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (402)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~ 161 (402)
.... . ..+.+++|+|+|+++++... .++|+++|||||++||+|+|+|+|+|+++|.++++. .+.+|+
T Consensus 147 ~~~~-~--------~~~~~~~V~E~ss~~l~~~~-~~~p~iavitNi~~dHld~~gs~e~y~~aK~~i~~~---~~~~v~ 213 (438)
T PRK04663 147 ALDL-L--------EQDAELYVLELSSFQLETTS-SLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH---AELAVV 213 (438)
T ss_pred HHhh-h--------cCCCCEEEEEcChhhhccCc-ccCCCEEEEecCChhhCcccCCHHHHHHHHHHHHhC---CCEEEE
Confidence 6321 1 23468899999999887544 489999999999999999999999999999999984 379999
Q ss_pred eCCChhhHHHhhcccccEEEeecCC-CceeccccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHcCC
Q 015701 162 PFGNQHLNEAIKGHRFNLAWIGAFP-GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240 (402)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~lgi 240 (402)
|.||+.+..... ..++++|+... ++.+.. .....+.....+ . .+..+.++++|.||++|+++|+ +++..+|+
T Consensus 214 n~dd~~~~~~~~--~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~-~-~~~~~~l~l~G~hNv~NalaAi--a~a~~lGi 286 (438)
T PRK04663 214 NRDDKQTYPDHA--ELQLVTFGFDQQDFGLAQ-HQGREWLADNGQ-P-VLASAELKLVGRHNVANVLVVL--ALLDAAGV 286 (438)
T ss_pred eCCCHHHHhhhc--CCcEEEEecCCCCCCeEe-cCCeEEEEeCCc-e-eeehhhcCCcchhhHHHHHHHH--HHHHHcCC
Confidence 999998654432 34677887542 111110 011122221111 1 1123578999999999999999 89999999
Q ss_pred CHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccC-CCcEEEEEcCCCCcCCCCCCcchHhhhh
Q 015701 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIE 319 (402)
Q Consensus 241 ~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~-~~~~i~V~g~~~~~~~~~~~~~~~~~~~ 319 (402)
++++|+++|++|++++||||++.. .+++.+|||+|++||+|+.++++.+. .+|+++|+|+|.+.++ +.++.+
T Consensus 287 ~~~~i~~~L~~f~g~~~R~e~v~~-~~g~~~idDs~~tn~~s~~~Al~~~~~~~~~i~IlGg~~~~~~------~~~l~~ 359 (438)
T PRK04663 287 DYRKALDALKSYTGLTHRCQVVAD-NHGIKWVNDSKATNVASTLAALSGLEIEGKLYLLVGGVGKGAD------FSPLKP 359 (438)
T ss_pred CHHHHHHHHHhCCCCCCceEEeee-eCCcEEEeCCCcCCHHHHHHHHHhcccCCcEEEEECCccCCCC------HHHHHH
Confidence 999999999999999999999963 57899999999999999999999985 3579999999876653 456666
Q ss_pred cccc-ccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCcccccccChhHHhHHHHHH
Q 015701 320 PLNH-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398 (402)
Q Consensus 320 ~l~~-~d~vi~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~~s~~~~~~~~~r~~~~~~~ 398 (402)
.+.. .+.++++|+....+.+... .+..+++.++|++.+.+.+++||+||+++||.||++|++|++||+.|+++
T Consensus 360 ~~~~~~~~vi~~G~~~~~~~~~~~------~~~~~~~~e~av~~~~~~~~~gd~VLlsp~~as~d~f~~~~~RG~~F~~~ 433 (438)
T PRK04663 360 VLATLNLQLCCFGEDGDQFMPLHP------SARRFDTMEDAIESISPQLKSGDMVMLSPACASFDQFKNFMARGDAFAQL 433 (438)
T ss_pred HHHhhCcEEEEECCCHHHHHHHhc------cCeecCCHHHHHHHHHHhCCCCCEEEECcccccccCcCCHHHHHHHHHHH
Confidence 6543 3478899988766654331 13456889999999999899999999999999999999999999999999
Q ss_pred Hhc
Q 015701 399 AFS 401 (402)
Q Consensus 399 ~~~ 401 (402)
|++
T Consensus 434 v~~ 436 (438)
T PRK04663 434 ARQ 436 (438)
T ss_pred HHh
Confidence 975
No 8
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=4.3e-64 Score=504.07 Aligned_cols=375 Identities=28% Similarity=0.387 Sum_probs=303.3
Q ss_pred ceeeeeccccCCCcH----HHHHHHhcCCceeeHHHHHHhhCC---CCCcEEEEecCCChhhHHHHHHHHHHhcCCceee
Q 015701 2 WMLWLFLLEFQLKAT----GLACLLQSGKRVMSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 2 ~~~~~~~~~~~~~~p----~~~~a~~~~~~~l~~~~~~~~~~~---~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
.+++|+||+++++|| ++..|++.|+|++++++++++.+. .+.++|+||||||||||++||+++|+..|.++.+
T Consensus 66 ~d~vv~sp~i~~~~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~~ 145 (460)
T PRK01390 66 FAALVLSPGVPLTHPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDVQM 145 (460)
T ss_pred CCEEEECCCCCccCCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeEE
Confidence 368999999999988 999999999999999999988641 2678999999999999999999999999999999
Q ss_pred eccCchhhhhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccC
Q 015701 75 GGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV 154 (402)
Q Consensus 75 ~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~ 154 (402)
+||+|.|+..... ..+.+++|+|+|+++++.++. ++|+++|||||+.||+++|+|+|+|+++|+++++..+
T Consensus 146 ~gnig~~~~~~~~--------~~~~~~~V~E~~~~~ld~t~~-i~P~iaVITNI~~DHld~lgsle~ia~~K~~ii~~~~ 216 (460)
T PRK01390 146 GGNIGTAVLTLEP--------PPAGRVYVLELSSYQIDLAPS-LDPDVGVLLNLTPDHLDRHGTMEGYAAAKERLFAGQG 216 (460)
T ss_pred cCccchhhhhccc--------CCCCCEEEEEcCccccccccc-cCCCEEEEecCChhHhcccCCHHHHHHHHHHHHhcCC
Confidence 9999998765321 235688999999998887765 7999999999999999999999999999999999776
Q ss_pred CCeEEEEeCCChhhHHHhhcc---cccEEEeecCCCc--eeccccccceEEEecCCeeeEEee-eccCcCChhhHHHHHH
Q 015701 155 NTKLGLLPFGNQHLNEAIKGH---RFNLAWIGAFPGV--KIDTEAKTASFEVPAVGVVSQLQL-HNMKVMGRHNYHNAAV 228 (402)
Q Consensus 155 ~~~~~v~n~dd~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~l~l~G~~~~~Nal~ 228 (402)
+ +.+|+|.||+.+..+.... ..++++++..... .+... ....+..........+.. ..++++|.||++|+++
T Consensus 217 ~-~~~V~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~a 294 (460)
T PRK01390 217 P-DTAVIGVDDAYCRAIADRLEAAGRRVVRISAGKPLADGVYAD-GGKLVDARGGRQVEIADLRGIPSLPGAHNAQNAAA 294 (460)
T ss_pred C-CEEEEeCCCHHHHHHHHhccccCceEEEEeCCCCCcCceEEe-CCEEEEecCCCcceeeeHHhhccCCchhHHHHHHH
Confidence 6 8999999999877765432 3466777654210 00000 011122111100001100 0157999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccCCCcEEEEEcCCCCcCCC
Q 015701 229 AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG 308 (402)
Q Consensus 229 A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~ 308 (402)
|+ ++++.+|++.+.|.++|++|+++|||||++.. .++..+|||+|||||+|+.++++.+. ++++|+|++.++.
T Consensus 295 Ai--aa~~~lgi~~~~i~~gL~~~~~~~gR~e~i~~-~~g~~vIdDs~ahNp~s~~~aL~~~~--~i~~I~G~~d~~~-- 367 (460)
T PRK01390 295 AY--AAARALGLSPEEIAAGLASFPGLAHRMEQVGR-RGGVLFVNDSKATNADAAAKALSSFD--RIYWIAGGKPKEG-- 367 (460)
T ss_pred HH--HHHHHcCCCHHHHHHHHHhCCCCCCceEEEee-eCCcEEEEcCCCCCHHHHHHHHHhCC--CeEEEecCccCCC--
Confidence 99 88999999999999999999999999999963 47889999999999999999999873 7899999654332
Q ss_pred CCCcchHhhhhccccccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhc----CCCCEEEEcCCCccccc
Q 015701 309 QESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA----TNGDAIVLSPGCASFDE 384 (402)
Q Consensus 309 ~~~~~~~~~~~~l~~~d~vi~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~----~~~d~vll~~G~~s~~~ 384 (402)
.++.+.......+.++++|.+.+.+.+.++.. . .+..+++.++|++.+.+.+ ++||+||++|||.||++
T Consensus 368 ----~~~~L~~~~~~v~~v~~~g~~~~~l~~~~~~~-~--~~~~~~~l~~Av~~a~~~a~~~~~~g~~vllsP~~as~d~ 440 (460)
T PRK01390 368 ----GIESLAPFFPRIAKAYLIGEAAEAFAATLGGA-V--PFEICGTLERAVAAAAADAAADGAPEPVVLLSPACASFDQ 440 (460)
T ss_pred ----CHHHHHHHHHhhCEEEEECCCHHHHHHHHhcC-C--CEEEeCCHHHHHHHHHHhhhccCCCCCEEEeChhhhcccc
Confidence 35556554445778888999999999888643 2 3567889999999999999 99999999999999999
Q ss_pred ccChhHHhHHHHHHHhc
Q 015701 385 FRNFEHRGMVFQELAFS 401 (402)
Q Consensus 385 ~~~~~~r~~~~~~~~~~ 401 (402)
|+||++||..|++++++
T Consensus 441 f~~~~~rg~~f~~~~~~ 457 (460)
T PRK01390 441 FKNFEVRGDAFRELVAA 457 (460)
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 99999999999999975
No 9
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=4.8e-64 Score=504.81 Aligned_cols=370 Identities=25% Similarity=0.376 Sum_probs=295.6
Q ss_pred eeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCC-----CCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeecc
Q 015701 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP-----RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (402)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~-----~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~ 77 (402)
+++|.||+++++||++++|+++|+|++++++++.+... .+.++|+||||||||||++||+++|+..|.++.+.||
T Consensus 72 D~VV~SpGi~~~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~Gn 151 (488)
T PRK03369 72 ALVVTSPGFRPTAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGN 151 (488)
T ss_pred CEEEECCCCCCCCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCC
Confidence 68999999999999999999999999999999866531 1447999999999999999999999999998899999
Q ss_pred CchhhhhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCe
Q 015701 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTK 157 (402)
Q Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~ 157 (402)
+|.|+... + ..+.+++|+|+|+++++... .++|+++|||||++||+++|+|+|+|+++|.+|++ .+
T Consensus 152 iG~p~~~~-~--------~~~~~~~VlE~ss~ql~~~~-~~~P~vaVITNI~~DHLd~~gt~e~ya~aK~~I~~----~~ 217 (488)
T PRK03369 152 IGSPVLDV-L--------DEPAELLAVELSSFQLHWAP-SLRPEAGAVLNIAEDHLDWHGTMAAYAAAKARALT----GR 217 (488)
T ss_pred CchHHHHh-c--------cCCCCEEEEECChHHhCccc-ccCCCEEEEcCCCHHHhhhcCCHHHHHHHHHHHhc----CC
Confidence 99997432 1 23578899999999887553 48999999999999999999999999999999997 37
Q ss_pred EEEEeCCChhhHHHhhccccc-EEEeecCC----CceeccccccceEEE-ecCCeeeEEeeeccCcCChhhHHHHHHHHH
Q 015701 158 LGLLPFGNQHLNEAIKGHRFN-LAWIGAFP----GVKIDTEAKTASFEV-PAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231 (402)
Q Consensus 158 ~~v~n~dd~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~ 231 (402)
.+|+|.||+.+..+....... ...++... ++.+. .. ..+.. ...+.. ......++++|.||++|+++|+
T Consensus 218 ~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~-~~~~~~l~l~G~hnv~NalaAl- 292 (488)
T PRK03369 218 VAVVGLDDSRAAALLDTAPAPVRVGFRLGEPAAGELGVR-DG--HLVDRAFADDLR-LAPVASIPVPGPVGVLDALAAA- 292 (488)
T ss_pred EEEEECCCHHHHHHHHhCCCcEEEEEeCCCCCcCCceEE-CC--EEEEeccCCccc-eechhhcCCCcHhHHHHHHHHH-
Confidence 899999999887765433222 22332211 11111 00 00000 000100 0112468999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccCCCcEEEEEcCCCCcCCCCCC
Q 015701 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQES 311 (402)
Q Consensus 232 ~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~ 311 (402)
+++..+|++.+.|.++|++|+++|||||++. ..+++.+|||||||||+|++++++.++ ++++|+|++.. +
T Consensus 293 -a~a~~lGi~~e~i~~~L~~f~~~~gR~E~v~-~~~gv~iIDDS~AhNp~s~~aal~~~~--~iilI~GG~~k-~----- 362 (488)
T PRK03369 293 -ALARAVGVPAGAIADALASFRVGRHRAEVVA-VADGITYVDDSKATNPHAARASILAYP--RVVWIAGGLLK-G----- 362 (488)
T ss_pred -HHHHHcCCCHHHHHHHHHhCCCCCCccEEEE-cCCCEEEEECCCCCCHHHHHHHHHhCC--CeEEEecCcCC-C-----
Confidence 8999999999999999999999999999996 367899999999999999999999884 68999976643 2
Q ss_pred cchHhhhhccc-cccEEEEeCCChHHHHHHHHhCCCCccccccc--------------------------------cHHH
Q 015701 312 NGFEKLIEPLN-HHRCVITFGYSGVLIWKTLVNNGLSIPCFAVA--------------------------------NMKD 358 (402)
Q Consensus 312 ~~~~~~~~~l~-~~d~vi~~g~~~~~~~~~l~~~~~~~~~~~~~--------------------------------~~~~ 358 (402)
..+..+.+.+. ..+.++++|+....+.+.+.+.....++..+. ++++
T Consensus 363 ~d~~~l~~~l~~~~~~vi~iG~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 442 (488)
T PRK03369 363 ASVDALVAEMASRLVGAVLIGRDRAVVAEALSRHAPDVPVVQVVTGEDAGMPATPEVPVACVTDVADDDGETLGDAVMAA 442 (488)
T ss_pred CCHHHHHHHHhhheeEEEEEcCCHHHHHHHHHhcCCCCCEEEeccccccccccccccccccccccccccccccchhhHHH
Confidence 14666777665 37889999999999988886421111233231 5999
Q ss_pred HHHHHHHhcCCCCEEEEcCCCcccccccChhHHhHHHHHHHhc
Q 015701 359 AVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 401 (402)
Q Consensus 359 ai~~~~~~~~~~d~vll~~G~~s~~~~~~~~~r~~~~~~~~~~ 401 (402)
|++.|.+.+++||+|||+|+|.||++|+||++||..|+++|++
T Consensus 443 av~~a~~~a~~gd~vLlSPacaSfd~f~~y~~RG~~F~~~v~~ 485 (488)
T PRK03369 443 AVAAARRLARPGDTVLLAPAGASFDQFTGYGDRGDAFAAAVRA 485 (488)
T ss_pred HHHHHHHhCCCCCEEEeChhhcccccccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999975
No 10
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.1e-63 Score=499.55 Aligned_cols=378 Identities=27% Similarity=0.421 Sum_probs=302.9
Q ss_pred eeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeeccCchhh
Q 015701 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (402)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~g~~~ 82 (402)
.++|+||+++++||++++|+++++|++++++++++.. .+.++|+||||||||||++||+++|+..|.++..+||+|.|+
T Consensus 70 d~vv~s~gi~~~~~~~~~a~~~~i~v~~~~~~~~~~~-~~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~~~gniG~~~ 148 (459)
T PRK02705 70 DLVVVSPGIPWDHPTLVELRERGIEVIGEIELAWRAL-KHIPWVGITGTNGKTTVTALLAHILQAAGLNAPACGNIGYAA 148 (459)
T ss_pred CEEEECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhh-cCCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEecccChhH
Confidence 5789999999999999999999999999999998876 567899999999999999999999999999988899999998
Q ss_pred hhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEEe
Q 015701 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162 (402)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~n 162 (402)
+..... ... ...+.+++|+|+|+++++..+. ++|+++|||||++||+++|+|+|+|+++|.++++. .+.+|+|
T Consensus 149 ~~~~~~-~~~--~~~~~d~~VlE~~s~~l~~~~~-~~p~iaVITNI~~DHld~~gt~e~~~~~K~~i~~~---~~~~Vln 221 (459)
T PRK02705 149 CELALL-RSG--KAQKPDWIVAELSSYQIESSPE-LAPKIGIWTTFTPDHLERHGTLENYFAIKASLLER---SEIRILN 221 (459)
T ss_pred HHHHhh-hhc--cCCCCCEEEEEccccccccCcc-cCCCEEEEecCChhhhcccCCHHHHHHHHHHHhcc---CCEEEEE
Confidence 764320 000 1345688999999999888776 89999999999999999999999999999999983 5899999
Q ss_pred CCChhhHHHhhcccccEEEeecCCC-ceecccc-c--cceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHc
Q 015701 163 FGNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEA-K--TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI 238 (402)
Q Consensus 163 ~dd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~--~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~l 238 (402)
.||+.+..+..... +.++++.... ....... . .....+...+ . .+....++++|.||++|+++|+ ++++.+
T Consensus 222 ~dd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~l~l~G~hn~~NalaAi--a~a~~l 296 (459)
T PRK02705 222 GDDPYLRQHRSSWP-KGYWTSTQGKASLLGQADGWILEEGWVVERGE-P-LFPLSALKMPGAHNLQNLLLAV--AAARLA 296 (459)
T ss_pred CCCHHHHHHHhcCC-ceEEeccCCccccccccceeEecCCEEEECCc-c-eeeHHHcCCccHHHHHHHHHHH--HHHHHc
Confidence 99998877754432 3455553211 1110000 0 0001111111 0 1111358999999999999999 899999
Q ss_pred CCCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccCCCcEEEEEcCCCCcCCCCCCcchHhhh
Q 015701 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318 (402)
Q Consensus 239 gi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~ 318 (402)
|++++.+.++|++|++++||||++. ..+++.+|||+++|||+|++++++.++ +++++|+|+|.+.++ +.++.
T Consensus 297 gv~~~~i~~~L~~f~~~~gR~e~~~-~~~~~~ii~Ds~a~N~~s~~~al~~l~-~~~i~IlGg~~~~~d------~~~~~ 368 (459)
T PRK02705 297 GLSAEAIAEALRSFPGVPHRLERIG-TINGIDFINDSKATNYDAAEVGLKAVP-GPVILIAGGEAKQGD------DSAWL 368 (459)
T ss_pred CCCHHHHHHHHHhCCCCCCceEEEE-eeCCcEEEEeCCCCCHHHHHHHHHhCC-CCeEEEecCccCCCC------HHHHH
Confidence 9999999999999999999999986 356889999988999999999999996 478999998866543 33334
Q ss_pred hccc-cccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCC--CEEEEcCCCcccccccChhHHhHHH
Q 015701 319 EPLN-HHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG--DAIVLSPGCASFDEFRNFEHRGMVF 395 (402)
Q Consensus 319 ~~l~-~~d~vi~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~--d~vll~~G~~s~~~~~~~~~r~~~~ 395 (402)
+.+. ..+.++++|+....+.+.++..+....+..++|.++|++.+.+.+++| |+||++|+|.||++|++|++||++|
T Consensus 369 ~~l~~~~~~vi~~g~~~~~l~~~l~~~~~~~~~~~~~~~~eA~~~a~~~a~~g~~~~vllsp~~as~d~f~~~~~rg~~F 448 (459)
T PRK02705 369 KQIKAKAAAVLLFGEAAPTLAQRLQESGYTGEYEIVETLDEAVPRAFELAKELQAKSVLLSPACASFDQYKNFEERGDHF 448 (459)
T ss_pred HHHHhheeEEEEECCCHHHHHHHHHhcCCCcceEEcCCHHHHHHHHHHHhCCCCCCEEEechhhhhhccccCHHHHHHHH
Confidence 4443 378899999998888888865432112556789999999999999998 7999999999999999999999999
Q ss_pred HHHHhc
Q 015701 396 QELAFS 401 (402)
Q Consensus 396 ~~~~~~ 401 (402)
+++|++
T Consensus 449 ~~~v~~ 454 (459)
T PRK02705 449 RQLIQA 454 (459)
T ss_pred HHHHHH
Confidence 999975
No 11
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.9e-63 Score=497.01 Aligned_cols=373 Identities=28% Similarity=0.431 Sum_probs=308.6
Q ss_pred ceeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeeccCchh
Q 015701 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (402)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~g~~ 81 (402)
++++|+||+++++||++++|+++|+|++++++++.+.. +.++|+||||||||||++||+++|+..|.++.+.|++|.|
T Consensus 69 ~d~vV~s~gi~~~~~~~~~a~~~~i~v~~~~el~~~~~--~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gnig~p 146 (447)
T PRK02472 69 FDLMVKNPGIPYTNPMVEKALEKGIPIITEVELAYLIS--EAPIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGNIGYP 146 (447)
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHhc--CCCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEcccChh
Confidence 56899999999999999999999999999999866654 5789999999999999999999999999999999999998
Q ss_pred hhhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEE
Q 015701 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (402)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~ 161 (402)
.+.... ...+.+++|+|++++++.... .++|+++|||||++||+++|+|+|+|+++|.++++..++.+.+|+
T Consensus 147 ~~~~~~-------~~~~~~~~V~E~ss~~~~~~~-~~~P~iaVITnI~~DHld~~gt~e~i~~~K~~i~~~~~~~~~~v~ 218 (447)
T PRK02472 147 ASEVAQ-------KATADDTLVMELSSFQLMGIE-TFRPHIAVITNIYPAHLDYHGTFENYVAAKWNIQKNQTEDDYLVI 218 (447)
T ss_pred hHHHHh-------cCCCCCEEEEEcCchhhCccc-ccCCCEEEEeccChhhhcccCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 865321 123467899999988766444 379999999999999999999999999999999998888899999
Q ss_pred eCCChhhHHHhhcccccEEEeecCCCce--eccccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHcC
Q 015701 162 PFGNQHLNEAIKGHRFNLAWIGAFPGVK--IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG 239 (402)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~lg 239 (402)
|.||+.+..++.....++++|+...... ..... ..+... +.. .+....++++|.||++|+++|+ +++..+|
T Consensus 219 n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~-~~~~~~l~l~G~hn~~Na~aAi--a~~~~lg 291 (447)
T PRK02472 219 NFDQEEVKELAKQTKATVVPFSTTEKVEDGAYIKD--GALYFK--GEK-IMAADDIVLPGSHNLENALAAI--AAAKLLG 291 (447)
T ss_pred eCCcHHHHHHHhhcCceEEEeecCCCCcCceEEEC--CEEEEC--Cce-EEehhhcCCCCHHHHHHHHHHH--HHHHHcC
Confidence 9999988777665555677887543210 00000 012221 111 1112368999999999999999 8999999
Q ss_pred CCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccCCCcEEEEEcCCCCcCCCCCCcchHhhhh
Q 015701 240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319 (402)
Q Consensus 240 i~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~ 319 (402)
++++.|.++|++|++++||||++. ..++..+|||+|||||+|+.++++.+ ++++++|+|+. +++ ..++++++
T Consensus 292 i~~~~i~~~L~~f~~~~~R~e~~~-~~~g~~vi~D~~a~N~~s~~~al~~~-~~~ii~I~g~~-~~~-----~~~~~l~~ 363 (447)
T PRK02472 292 VSNEAIREVLSTFSGVKHRLQYVG-TIDGRKFYNDSKATNILATQKALSGF-NQPVVLLAGGL-DRG-----NEFDELVP 363 (447)
T ss_pred CCHHHHHHHHHhCCCCCCcceEEE-EECCeEEEECCCCCCHHHHHHHHHhC-CCCEEEEECCC-CCC-----CCHHHHHH
Confidence 999999999999999999999996 35678999999999999999999998 46789999964 222 25778888
Q ss_pred ccccccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCcccccccChhHHhHHHHHHH
Q 015701 320 PLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399 (402)
Q Consensus 320 ~l~~~d~vi~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~~s~~~~~~~~~r~~~~~~~~ 399 (402)
.+..+|.++++|.....+.+.++..+. ++.++++.++|++.+.+.++++|+||+++++.||++|++|++||..|+++|
T Consensus 364 ~l~~~~~v~~~G~~~~~l~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~d~VLls~a~~s~d~f~~~~~Rg~~F~~~v 441 (447)
T PRK02472 364 YLKNVKAMVVFGETAEKLARAAEKAGI--TVVEADNVEDAVPKAYELSEPGDVILLSPACASWDQYKTFEERGDEFIKAV 441 (447)
T ss_pred HHhccCEEEEECCCHHHHHHHHHhCCC--ceEEcCCHHHHHHHHHHhCCCCCEEEeCccccccccccCHHHHHHHHHHHH
Confidence 776688999999998888887754432 455678999999999988999999999999999999999999999999999
Q ss_pred hc
Q 015701 400 FS 401 (402)
Q Consensus 400 ~~ 401 (402)
++
T Consensus 442 ~~ 443 (447)
T PRK02472 442 EE 443 (447)
T ss_pred HH
Confidence 75
No 12
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=6.4e-63 Score=495.20 Aligned_cols=371 Identities=27% Similarity=0.384 Sum_probs=292.9
Q ss_pred eeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhh-----CCCCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeecc
Q 015701 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQV-----IPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (402)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~-----~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~ 77 (402)
+++|+||+++|+||++++|+++++++++++++..+. +..+.++|+||||||||||++||+++|+..|.++.+.||
T Consensus 76 d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gn 155 (473)
T PRK00141 76 SLVVTSPGWRPDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAAQAVGN 155 (473)
T ss_pred CEEEeCCCCCCCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcEEEecc
Confidence 589999999999999999999999999999986553 212347999999999999999999999999999999999
Q ss_pred CchhhhhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCe
Q 015701 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTK 157 (402)
Q Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~ 157 (402)
+|.|++.... ...+.+++|+|+|+++++... .++|+++|||||++||+|+|+|+|+|+++|.++++ .+
T Consensus 156 ig~p~~~~l~-------~~~~~~~~V~E~ss~~l~~~~-~~~pdiaViTNi~~dHLd~~~s~e~y~~aK~~l~~----~~ 223 (473)
T PRK00141 156 IGVPVSAALV-------AQPRIDVLVAELSSFQLHWSP-TLTPDVGVVLNLAEDHIDWHGSMRDYAADKAKVLR----GP 223 (473)
T ss_pred CChhHHHHHh-------cCCCCCEEEEecCCcccccCc-ccCCCEEEEcCCChhhccccCCHHHHHHHHHHHhh----CC
Confidence 9999874322 134568899999998876554 48999999999999999999999999999999997 36
Q ss_pred EEEEeCCChhhHHHhhcc-cccEEEeecCCCc----eeccccccceEEEecCCeeeEEe-eeccCcCChhhHHHHHHHHH
Q 015701 158 LGLLPFGNQHLNEAIKGH-RFNLAWIGAFPGV----KIDTEAKTASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAAL 231 (402)
Q Consensus 158 ~~v~n~dd~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l~G~~~~~Nal~A~~ 231 (402)
.+|+|.||+.+..+.... ..++++|+..... .+. ...+.....+..+.+. ...++++|.||++|+++|+
T Consensus 224 ~~vln~Dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aA~- 298 (473)
T PRK00141 224 VAVIGADDEYVVQLTSAADLSGLIGFTMGEPAAGQVGVR----DGELVDNAFGQNVVLASAEGISPAGPAGVLDALAAA- 298 (473)
T ss_pred EEEEECCCHHHHHHHhhcCCCcEEEEeCCCCCcCcceEE----CCEEEEecCCCceEEeehhhcCCCcHhHHHHHHHHH-
Confidence 899999999988776543 2357788753210 111 0111111112122221 2368999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccCCCcEEEEEcCC-CCcCCCCC
Q 015701 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ-AKVLNGQE 310 (402)
Q Consensus 232 ~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~-~~~~~~~~ 310 (402)
+++..+|++.+.+.++|++|++++||||++. ..++..+|||||+|||+|++++++.++ ++++|+|++ .+++
T Consensus 299 -a~~~~lgi~~~~i~~~l~~~~~~~~R~e~~~-~~~~~~iiDdsyahNp~s~~~~l~~l~--~~~~i~gG~~kdkd---- 370 (473)
T PRK00141 299 -AVARSQGVAPEAIARALSSFEVAGHRGQVVA-EHGGVTWIDNSKATNPHAADAALAGHE--SVVWVAGGQLKGAD---- 370 (473)
T ss_pred -HHHHHcCCCHHHHHHHHhhCCCCCCceEEEE-EeCCEEEEEcCCCCCHHHHHHHHHhcC--CEEEEecCccCCCC----
Confidence 8999999999999999999998888999996 356889999999999999999999984 678999544 5543
Q ss_pred CcchHhhhhccc-cccEEEEeCCChHHHHHHHHhCCCCcccc--ccc----cHHHHHHHHHHhcCCCCEEEEcCCCcccc
Q 015701 311 SNGFEKLIEPLN-HHRCVITFGYSGVLIWKTLVNNGLSIPCF--AVA----NMKDAVNHARRMATNGDAIVLSPGCASFD 383 (402)
Q Consensus 311 ~~~~~~~~~~l~-~~d~vi~~g~~~~~~~~~l~~~~~~~~~~--~~~----~~~~ai~~~~~~~~~~d~vll~~G~~s~~ 383 (402)
++++.+.+. ..+.+++++.+...+.+.+.+......+. ..+ ++++|++.+.+.+++||+||++|||.||+
T Consensus 371 ---~~~~~~~l~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~Av~~a~~~a~~gd~VllsPa~aS~d 447 (473)
T PRK00141 371 ---IDDLIRTHAPRIKAAVVLGVDRAEIVAALAEHAPDAPVTVTDSTDPEEAMEEAVSAAVSLAEPGDTVLLAPAAASLD 447 (473)
T ss_pred ---hHHHHHHHHhhccEEEEECCCHHHHHHHHHhcCCCCcEEEecCcccccCHHHHHHHHHHhCCCCCEEEeChhhhccc
Confidence 444555443 25567777877777777775421111122 222 45999999999999999999999999999
Q ss_pred cccChhHHhHHHHHHHhc
Q 015701 384 EFRNFEHRGMVFQELAFS 401 (402)
Q Consensus 384 ~~~~~~~r~~~~~~~~~~ 401 (402)
+|+||++||++|+++|++
T Consensus 448 ~f~~~~~RG~~F~~~v~~ 465 (473)
T PRK00141 448 MYTGMGQRGDLFAEAARR 465 (473)
T ss_pred cccCHHHHHHHHHHHHHH
Confidence 999999999999999974
No 13
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=8.5e-63 Score=493.34 Aligned_cols=374 Identities=25% Similarity=0.343 Sum_probs=299.6
Q ss_pred ceeeeeccccCCCcHHHHHHHhcCCceeeHHHH-HHhhCCC---CCcEEEEecCCChhhHHHHHHHHHHhcCCceeeecc
Q 015701 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDF-AAQVIPR---SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (402)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~-~~~~~~~---~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~ 77 (402)
.+++|+||+++|+||++++|++.++|+++++++ +.+.... ..++|+||||||||||++||+++|+..|.++.+.||
T Consensus 70 ~d~vV~SpgI~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~Gn 149 (468)
T PRK04690 70 FDVVVKSPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGHRTALVGN 149 (468)
T ss_pred CCEEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEcCC
Confidence 368999999999999999999999999999998 4443311 248999999999999999999999999988899999
Q ss_pred CchhhhhhhhhhccCCCCCCCccEEEEEeCcccccCCCc-cccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCC
Q 015701 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNT 156 (402)
Q Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~-~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~ 156 (402)
+|.|+..... ...+.+++|+|+|++++..... .++|+++|||||++||+++|+|+|+|.++|.++++..++
T Consensus 150 iG~p~~~~~~-------~~~~~~~~VlE~ss~q~~~~~~~~~~P~iaVItNI~~DHld~~gs~e~y~~aK~~i~~~~~~- 221 (468)
T PRK04690 150 IGVPLLEVLA-------PQPAPEYWAIELSSYQTGDVARSGARPELAVVLNLFPEHLDWHGGEARYYRDKLSLVTEGRP- 221 (468)
T ss_pred CCcchHHHhc-------cCCCCcEEEEEecCCcccccccccCCCCEEEEcCCCHHHhcccCCHHHHHHHHHHHHhCCCC-
Confidence 9998854321 1235688999999988765543 379999999999999999999999999999999987543
Q ss_pred eEEEEeCCChhhHHHhhcccccEEEeecCCCceeccccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHH
Q 015701 157 KLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL 236 (402)
Q Consensus 157 ~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~ 236 (402)
+.+|+|.||+....+.. ...++.+|+........ ..+.+.. + ...+....++++|.||+.|+++|+ +++.
T Consensus 222 ~~~v~n~dd~~~~~~~~-~~~~v~~~~~~~~~~~~-----~~~~~~~-~-~~~~~~~~~~l~G~h~~~Na~~A~--a~~~ 291 (468)
T PRK04690 222 RIALLNAADPRLAALQL-PDSEVVWFNHPDGWHVR-----GDVVYRG-E-QALFDTALVPLPGRHNRGNLCAVL--AALE 291 (468)
T ss_pred CeEEEeCccHHHHHHhc-CCCeEEEeeCCccceec-----ceEEEcC-C-ceEEeeccccCccHhhHHHHHHHH--HHHH
Confidence 68899999998766532 23466777653221111 1122221 1 111223468999999999999999 8889
Q ss_pred HcCCCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccCCCcEEEEEcCCCCcCCCCCCcchHh
Q 015701 237 DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK 316 (402)
Q Consensus 237 ~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~ 316 (402)
.+|++.+.|.++|++|+++|||||++. ..+|+.+||||++|||++++++++.++++++++|+|++.+.. .+++
T Consensus 292 ~lgi~~~~i~~~l~~~~~~~gR~e~~~-~~~g~~iidDs~ahNp~a~~~al~~~~~~~i~~i~Gg~~k~k------d~~~ 364 (468)
T PRK04690 292 ALGLDAVALAPAAAGFRPLPNRLQELG-SRDGITYVNDSISTTPHASLAALDCFAGRRVALLVGGHDRGL------DWTD 364 (468)
T ss_pred HcCCCHHHHHHHHHhCCCCCCCcEEEE-ccCCeEEEEeCCCCCHHHHHHHHHhccCCcEEEEEcCCCCCC------CHHH
Confidence 999999999999999999999999996 356899999999999999999999987678999999753211 3566
Q ss_pred hhhcccc--ccEEEEeCCChHHHHHHHHhCCC--CccccccccHHHHHHHHHH-hcCCCCEEEEcCCCcccccccChhHH
Q 015701 317 LIEPLNH--HRCVITFGYSGVLIWKTLVNNGL--SIPCFAVANMKDAVNHARR-MATNGDAIVLSPGCASFDEFRNFEHR 391 (402)
Q Consensus 317 ~~~~l~~--~d~vi~~g~~~~~~~~~l~~~~~--~~~~~~~~~~~~ai~~~~~-~~~~~d~vll~~G~~s~~~~~~~~~r 391 (402)
+.+.+.. ++.++++|.+.+...+.+.+... ...+..++++++|++.+.+ ..++||+||++|||.||++|+||++|
T Consensus 365 l~~~l~~~~~~~v~~~g~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Av~~A~~~~~~~gdvVLlSPa~aSfD~f~~y~~R 444 (468)
T PRK04690 365 FAAHMAQRAPLEIVTMGANGPRIHALLAPLAAAGRFGLHAADDLAHAVRLARTALGAQGGVVLLSPGAPSFGAYRDYVAR 444 (468)
T ss_pred HHHHHHhccCeEEEEeCCCHHHHHHHHHhcccccCCceEEcCCHHHHHHHHHHHhCCCCCEEEeCccccccccccCHHHH
Confidence 7666653 37788889888777776754210 1235567899999999988 78899999999999999999999999
Q ss_pred hHHHHHHHh
Q 015701 392 GMVFQELAF 400 (402)
Q Consensus 392 ~~~~~~~~~ 400 (402)
|+.|+++++
T Consensus 445 G~~F~~~~~ 453 (468)
T PRK04690 445 GRHFAQLAG 453 (468)
T ss_pred HHHHHHHhc
Confidence 999999986
No 14
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.4e-62 Score=490.50 Aligned_cols=366 Identities=28% Similarity=0.424 Sum_probs=297.4
Q ss_pred eeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeeccCchhh
Q 015701 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (402)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~g~~~ 82 (402)
+++|+||+++++||++.+|+++|++++++++++.+.. +.++|+||||||||||++||+++|+..|.++.++||+|.|.
T Consensus 67 d~vv~spgi~~~~~~~~~a~~~g~~v~~~~el~~~~~--~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gnig~p~ 144 (438)
T PRK03806 67 DLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREA--QAPIVAITGSNGKSTVTTLVGEMAKAAGWKVGVGGNIGLPA 144 (438)
T ss_pred CEEEECCCCCCCCHHHHHHHHCCCeEEEHHHHHhhhc--CCCEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEeCCcchhH
Confidence 6899999999999999999999999999999988765 56899999999999999999999999999999999999886
Q ss_pred hhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEEEEecCCcchhcCC-CCHHHHHHHHHHhccccCCCeEEEE
Q 015701 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLL 161 (402)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~~~-~t~e~i~~~k~~i~~~~~~~~~~v~ 161 (402)
.. .+ ..+.+++|+|+|+++++.+.. ++|+++|||||++||+++| +|+|+|+++|.++++. .+.+|+
T Consensus 145 ~~-~~--------~~~~~~~V~E~ss~~l~~~~~-~~p~iaViTNI~~DHld~~g~s~e~~~~~K~~i~~~---~~~~v~ 211 (438)
T PRK03806 145 LS-LL--------DQECELYVLELSSFQLETTSS-LKAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKVCVV 211 (438)
T ss_pred HH-hh--------ccCCCEEEEEccchhhccCcc-cCCCEEEEecCcHHHhccccCCHHHHHHHHHHHHhC---CCeEEE
Confidence 32 11 334688999999998887654 7999999999999999999 7999999999999984 478999
Q ss_pred eCCChhhHHHhhcccccEEEeecCC-CceeccccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHcCC
Q 015701 162 PFGNQHLNEAIKGHRFNLAWIGAFP-GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240 (402)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~lgi 240 (402)
|.|||.+..+... ..++.+|+.+. ++..... ....+.....+ . .+..++++++|.||++|+++|+ ++++.+|+
T Consensus 212 n~dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~l~l~G~hn~~Na~aAi--a~a~~lgi 285 (438)
T PRK03806 212 NADDALTMPIRGA-DKRCVSFGVNMGDYHLNRQ-QGETWLRVKGE-K-VLNTKEMKLSGQHNYTNALAAL--ALADAVGI 285 (438)
T ss_pred eCCCHHHHHHhcC-CceEEEEecCCCceEEEec-CCeEEEEecCc-e-eeehhhcCCcccccHHHHHHHH--HHHHHcCC
Confidence 9999988775432 34566776431 1211110 11111111111 1 1123468999999999999999 89999999
Q ss_pred CHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccC-CCcEEEEEcCCCCcCCCCCCcchHhhhh
Q 015701 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIE 319 (402)
Q Consensus 241 ~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~-~~~~i~V~g~~~~~~~~~~~~~~~~~~~ 319 (402)
+.+.++++|++|+++|||||++. ..+++.+|||+|+|||+|++++++.+. .+|+++|+|++.+.+ .+.++.+
T Consensus 286 ~~~~i~~~L~~f~~~~gR~E~v~-~~~~~~~i~Ds~a~n~~a~~~al~~l~~~~~~i~IlG~~~k~~------d~~~l~~ 358 (438)
T PRK03806 286 PRASSLKALTTFTGLPHRFQLVL-EHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSA------DFSPLAR 358 (438)
T ss_pred CHHHHHHHHHhCCCCCCeEEEEE-eeCCEEEEEcCCCCCHHHHHHHHHhCccCCcEEEEECCcCCCC------CHHHHHH
Confidence 99999999999999999999996 356889999989999999999999996 357999999875433 2455655
Q ss_pred cccc-ccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCcccccccChhHHhHHHHHH
Q 015701 320 PLNH-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398 (402)
Q Consensus 320 ~l~~-~d~vi~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~~s~~~~~~~~~r~~~~~~~ 398 (402)
.+.. ...++++|++.+.+.+.+.. .+..+++.++|++.+.+.++++|+||++|||.||++|++|++||+.|+++
T Consensus 359 ~l~~~~~~v~~~g~~~~~l~~~~~~-----~~~~~~~~~~av~~a~~~~~~gd~VLlsp~~as~d~f~~~~~RG~~F~~~ 433 (438)
T PRK03806 359 YLNGDNIRLYCFGRDGAQLAALRPE-----VSQLTETMEQAMRLIAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARL 433 (438)
T ss_pred HHHhhCcEEEEECCCHHHHHHHhhc-----ceEecCCHHHHHHHHHHhCCCCCEEEEChhhhhhcCccCHHHHHHHHHHH
Confidence 5542 34688899988777765432 13457899999999999999999999999999999999999999999999
Q ss_pred Hhc
Q 015701 399 AFS 401 (402)
Q Consensus 399 ~~~ 401 (402)
|++
T Consensus 434 v~~ 436 (438)
T PRK03806 434 AKE 436 (438)
T ss_pred HHh
Confidence 975
No 15
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.2e-61 Score=489.06 Aligned_cols=378 Identities=29% Similarity=0.401 Sum_probs=300.1
Q ss_pred ceeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCC--CCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeeccCc
Q 015701 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP--RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG 79 (402)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~--~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~g 79 (402)
.+++|+|++++|++|++..|++.|++++++++++.+... ++.++|+||||||||||++||+++|+..|.++.+.||+|
T Consensus 79 ~D~Vv~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~~Gnig 158 (480)
T PRK01438 79 TDLVVTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAAAVGNIG 158 (480)
T ss_pred CCEEEECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeEEECCcc
Confidence 468999999999999999999999999999999877652 256799999999999999999999999999998999999
Q ss_pred hhhhhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEE
Q 015701 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLG 159 (402)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~ 159 (402)
.|+..... ...+++++|+|+|+++++..+. ++|+++|||||+.||+++|+|+|+|+++|.+|++. ..+.+
T Consensus 159 ~~~~~~~~-------~~~~~~~~V~E~ss~~l~~~~~-i~P~iaVITNI~~DHld~lgt~e~ia~~K~~I~~~--~~~~~ 228 (480)
T PRK01438 159 TPVLDAVR-------DPEGYDVLAVELSSFQLHWSPS-VSPHSAAVLNLAPDHLDWHGSMEAYAAAKARIYEG--TTVAC 228 (480)
T ss_pred HHHHHHHh-------cCCCCCEEEEEcChHHhCcCcc-cCCCEEEEecCChhhccccCCHHHHHHHHHHHHhC--CCceE
Confidence 98764321 2346789999999998876654 79999999999999999999999999999999985 34789
Q ss_pred EEeCCChhhHHHhhcc----cccEEEeecCC----Cceeccccc-cceEEEecCCeeeEEe-eeccCcCChhhHHHHHHH
Q 015701 160 LLPFGNQHLNEAIKGH----RFNLAWIGAFP----GVKIDTEAK-TASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVA 229 (402)
Q Consensus 160 v~n~dd~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~l~l~G~~~~~Nal~A 229 (402)
|+|.|||.+..+.... ..++++|+.+. .+.+..... ...+.....+..+.+. ...++++|.||++|+++|
T Consensus 229 v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aA 308 (480)
T PRK01438 229 VYNVADPATEDLVEEADVVEGARAIGFTLGTPGPSQLGVVDGILVDRAFVEDRQTSALELATLEDLRPAAPHNIANALAA 308 (480)
T ss_pred EEeCCcHHHHHHHhhhcccCCceEEEEeCCCCCCCCceEECCEEEEEeeccccccccceeeeHHHcCCCCHHHHHHHHHH
Confidence 9999999887765432 34666776431 111110000 0001111001011111 125899999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccCCCcEEEEEc-CCCCcCCC
Q 015701 230 ALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG-GQAKVLNG 308 (402)
Q Consensus 230 ~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g-~~~~~~~~ 308 (402)
+ ++++.+|++.+.|+++|++|+++|||||++.. .+++.+|||+|||||+|++++++.+ +++++|+| .+.++.
T Consensus 309 i--a~~~~lgi~~~~i~~~L~~~~~~~gR~E~i~~-~~~~~iiDDs~ahNp~a~~aaL~~l--~~i~~I~gG~~~~kd-- 381 (480)
T PRK01438 309 A--ALARSFGVPPAAVRDGLRAFRPDAHRIEHVAD-ADGVTWVDDSKATNPHAAAASLAAY--PSVVWIAGGLAKGAD-- 381 (480)
T ss_pred H--HHHHHcCCCHHHHHHHHHhCCCCCCceEEEEE-ECCEEEEecCccCCHHHHHHHHHhC--CCEEEEEecccCCCC--
Confidence 9 88899999999999999999999999999963 5678899999999999999999999 37899997 454442
Q ss_pred CCCcchHhhhhccc-cccEEEEeCCChHHHHHHHHhCCCCccccccc-----cHHHHHHHHHHhcCCCCEEEEcCCCccc
Q 015701 309 QESNGFEKLIEPLN-HHRCVITFGYSGVLIWKTLVNNGLSIPCFAVA-----NMKDAVNHARRMATNGDAIVLSPGCASF 382 (402)
Q Consensus 309 ~~~~~~~~~~~~l~-~~d~vi~~g~~~~~~~~~l~~~~~~~~~~~~~-----~~~~ai~~~~~~~~~~d~vll~~G~~s~ 382 (402)
+..+.+.+. ..+.++++|.+...+.+.++.......+..++ +.++|++.+.+.+.++|+||+.|+|.||
T Consensus 382 -----~~~~~~~l~~~~~~vi~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~A~~~a~~~~~~~d~vllsp~~as~ 456 (480)
T PRK01438 382 -----FDDLVRRAAGRLRGVVLIGADRAEIAEALARHAPDVPVVEVDRTDTGAMDEAVAAAAKLARPGDTVLLAPAAASM 456 (480)
T ss_pred -----HHHHHHHHHhhceEEEEECCCHHHHHHHHHhcCCCCCEEEecCCCcCCHHHHHHHHHHhCCCCCEEEechhhhcc
Confidence 445555554 37889999999888888886531111333344 8999999999999999999999999999
Q ss_pred ccccChhHHhHHHHHHHhc
Q 015701 383 DEFRNFEHRGMVFQELAFS 401 (402)
Q Consensus 383 ~~~~~~~~r~~~~~~~~~~ 401 (402)
++|++|++||++|+++|++
T Consensus 457 d~f~~~~~Rg~~F~~~v~~ 475 (480)
T PRK01438 457 DMFTDYAARGDAFAAAVRA 475 (480)
T ss_pred ccccCHHHHHHHHHHHHHH
Confidence 9999999999999999975
No 16
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=4.8e-61 Score=485.89 Aligned_cols=380 Identities=30% Similarity=0.438 Sum_probs=300.6
Q ss_pred ceeeeeccccCCCc----HHHHHHHhcCCceeeHHHHHHhhCC------CCCcEEEEecCCChhhHHHHHHHHHHhcCCc
Q 015701 2 WMLWLFLLEFQLKA----TGLACLLQSGKRVMSELDFAAQVIP------RSIKILAVTGTNGKSTVVTFVGQMLNHLGIE 71 (402)
Q Consensus 2 ~~~~~~~~~~~~~~----p~~~~a~~~~~~~l~~~~~~~~~~~------~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~ 71 (402)
.+++|+||+++|+| |++.+|++.++|++++++++++.+. ...++|+||||||||||++||+++|+..|.+
T Consensus 70 ~d~vv~sp~I~~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~ 149 (498)
T PRK02006 70 VDLVALSPGLSPLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKK 149 (498)
T ss_pred CCEEEECCCCCCcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence 36899999999998 9999999999999999999887651 1248999999999999999999999999999
Q ss_pred eeeeccCchhhhhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcc
Q 015701 72 AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS 151 (402)
Q Consensus 72 ~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~ 151 (402)
+.+.|+++.+.......... .....+++|+|+|+++++.... ++|+++|||||++||+++|+|+|+|+++|.++++
T Consensus 150 ~~~~Gni~~~~~~~~~~~~~---~~~~~~~~V~E~ss~~l~~~~~-~~p~iaviTNI~~DHld~~gs~e~y~~aK~~i~~ 225 (498)
T PRK02006 150 VAVAGNISPAALDKLMEAID---AGALPDVWVLELSSFQLETTHT-LAPDAATVLNITQDHLDWHGSMAAYAAAKARIFG 225 (498)
T ss_pred EEEECCCCHHHHHHHHHhhc---cCCCCcEEEEEccHHHhCcccc-cCCCEEEEcCCChhhhcccCCHHHHHHHHHHHcC
Confidence 98889988654432111010 0112377999999988866554 8999999999999999999999999999999997
Q ss_pred ccCCCeEEEEeCCChhhHHHhhcc-cccEEEeecCC-----CceeccccccceEEEecCCee------------------
Q 015701 152 HMVNTKLGLLPFGNQHLNEAIKGH-RFNLAWIGAFP-----GVKIDTEAKTASFEVPAVGVV------------------ 207 (402)
Q Consensus 152 ~~~~~~~~v~n~dd~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~------------------ 207 (402)
+++.+|+|.|||.+..+.... ..++.+|+... ++.+.... ...+.....+..
T Consensus 226 ---~~~~~Vln~dd~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (498)
T PRK02006 226 ---PRTVRVLNRDDARVMAMAPPGGAADAVTFGLDEPAADGDYGLLRDN-GMAWLVEAEDRDAADPAPSRRRKKDAAPPP 301 (498)
T ss_pred ---CCCEEEEeCCCHHHHHHhhccCCccEEEEeCCCccccccceEEecC-CeEEEEecCccccccccccccccccccccc
Confidence 468999999999988776443 23577887532 11111000 001111100000
Q ss_pred -e---E-EeeeccCcCChhhHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHH
Q 015701 208 -S---Q-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282 (402)
Q Consensus 208 -~---~-~~~~~l~l~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s 282 (402)
. . .....++++|.||++|+++|+ ++++.+|++.+.++++|++|++++||||++.. .+++.+|||+|+|||.|
T Consensus 302 ~~~~~~~~~~~~l~l~G~hn~~NalaAi--a~~~~lgi~~~~i~~aL~~f~~~~gR~e~~~~-~~g~~~idDs~~tn~~s 378 (498)
T PRK02006 302 DIRLKRLMPADALRIRGLHNAANALAAL--ALARAIGLPAAPLLHGLREYRGEPHRVELVAT-IDGVDYYDDSKGTNVGA 378 (498)
T ss_pred ccchhceeeHhhcCCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHhhCCCCCCceEEEEE-ECCEEEEEcCCCCCHHH
Confidence 0 1 111368999999999999999 89999999999999999999999999999963 57899999999999999
Q ss_pred HHHHHcccCCCcEEEEEcCCCCcCCCCCCcchHhhhhccc-cccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHH
Q 015701 283 TCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN-HHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVN 361 (402)
Q Consensus 283 ~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~-~~d~vi~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~ai~ 361 (402)
+.++++.++ +|+++|+|++.+.. .++++.+.+. .+|.|+++|.+...+.+.++..+. .+..++|+++|++
T Consensus 379 ~~~al~~~~-~~ii~IlGg~~~~~------~~~~~~~~l~~~~~~vi~~G~~~~~i~~~~~~~~~--~~~~~~~~~eAi~ 449 (498)
T PRK02006 379 TVAALDGLA-QRVVLIAGGDGKGQ------DFSPLAAPVARHARAVVLIGRDAPAIRAALAGTGV--PLVDAATLEEAVR 449 (498)
T ss_pred HHHHHHhCC-CCEEEEEcCCCCCC------CHHHHHHHHHHhCCEEEEEcCCHHHHHHHHhhCCC--ceEecCCHHHHHH
Confidence 999999984 57899999875422 2444444443 378999999999888887754332 4566799999999
Q ss_pred HHHHhcCCCCEEEEcCCCcccccccChhHHhHHHHHHHhc
Q 015701 362 HARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 401 (402)
Q Consensus 362 ~~~~~~~~~d~vll~~G~~s~~~~~~~~~r~~~~~~~~~~ 401 (402)
.+.+.+++||+||++|+|+||++|++|++||.+|+++|++
T Consensus 450 ~a~~~~~~gd~VLlsp~~~S~d~f~~~~~Rg~~F~~~v~~ 489 (498)
T PRK02006 450 AAAALAQPGDAVLLSPACASLDMFRNYAHRAEVFRAAVEE 489 (498)
T ss_pred HHHHhcCCCCEEEEChhhcccccccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999974
No 17
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.4e-59 Score=470.83 Aligned_cols=379 Identities=28% Similarity=0.471 Sum_probs=306.2
Q ss_pred ceeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeeccCchh
Q 015701 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (402)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~g~~ 81 (402)
.+++|++++++++||++.+|+++|++++++++.+.+.. + .++|+||||||||||++||+++|+..|.++.+.|++|.|
T Consensus 69 ~d~vv~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~ig~~ 146 (450)
T PRK14106 69 VDLVVVSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGNIGYP 146 (450)
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCcccHH
Confidence 36789999999999999999999999999999999876 4 799999999999999999999999999888899999998
Q ss_pred hhhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEE
Q 015701 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (402)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~ 161 (402)
+...... ..+.+++|+|+|++.+.... .++|+++|||||+.||+++|+|+|+|+++|.++++..++.+++++
T Consensus 147 ~~~~~~~-------~~~~~~~v~E~~~~~~~~~~-~~~P~i~VITnI~~dHl~~~gt~e~ia~~K~~i~~~~~~~~~~vl 218 (450)
T PRK14106 147 LIDAVEE-------YGEDDIIVAEVSSFQLETIK-EFKPKVGCILNITPDHLDRHKTMENYIKAKARIFENQRPSDYTVL 218 (450)
T ss_pred HHHHHhc-------CCCCCEEEEEcChhhhcccc-ccCCCEEEEecCCcchhcccCCHHHHHHHHHHHHhCCCCCCEEEE
Confidence 7643221 23568899999987654333 389999999999999999999999999999999998888899999
Q ss_pred eCCChhhHHHhhcccccEEEeecCCCceeccccccceEEEecCCeeeEE-eeeccCcCChhhHHHHHHHHHHHHHHHcCC
Q 015701 162 PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240 (402)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~G~~~~~Nal~A~~~a~~~~lgi 240 (402)
|.|||.+..++...+.++++|+.+.............+.+...+....+ ....+|++|.||++|+++|+ ++++.+|+
T Consensus 219 n~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~aAi--a~~~~lgi 296 (450)
T PRK14106 219 NYDDPRTRSLAKKAKARVIFFSRKSLLEEGVFVKNGKIVISLGGKEEEVIDIDEIFIPGEHNLENALAAT--AAAYLLGI 296 (450)
T ss_pred eCCcHHHHHHHhhcCceEEEEecCccCcCceEEECCEEEEecCCCcceEEEHHHcCCCCHHHHHHHHHHH--HHHHHcCC
Confidence 9999988777766667788888542111000000111222222211111 12368999999999999999 88999999
Q ss_pred CHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccCCCcEEEEEcCCCCcCCCCCCcchHhhhhc
Q 015701 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP 320 (402)
Q Consensus 241 ~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~ 320 (402)
+++++.++|++|+++|||||++.. .++..+|+|+|+|||+|++++++.++ +++++|+|.+. ++ +.++++.+.
T Consensus 297 ~~~~i~~~L~~~~~~~gR~e~i~~-~~~~~vi~D~~ahNP~s~~~~l~~l~-~~~i~v~g~~~-~~-----k~~~~~~~~ 368 (450)
T PRK14106 297 SPDVIANTLKTFKGVEHRIEFVAE-INGVKFINDSKGTNPDAAIKALEAYE-TPIVLIAGGYD-KG-----SDFDEFAKA 368 (450)
T ss_pred CHHHHHHHHHhCCCCCcceEEEee-ECCEEEEeCCCccCHHHHHHHHHhCC-CCeEEEeCCcC-CC-----CCHHHHHHH
Confidence 999999999999999999999853 46788999988999999999999995 46888887652 21 235566665
Q ss_pred cc-cccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCcccccccChhHHhHHHHHHH
Q 015701 321 LN-HHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399 (402)
Q Consensus 321 l~-~~d~vi~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~~s~~~~~~~~~r~~~~~~~~ 399 (402)
+. ..|.++++|...+.+.+.++..+. .++.+++|+++|++.+.+.++++|+||+++.+.++++|++|+.||..|+++|
T Consensus 369 l~~~~~~vi~~g~~~~~l~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~d~ilv~~~~~~~~~~~~~~~~~~~~~~~~ 447 (450)
T PRK14106 369 FKEKVKKLILLGETAQEIAEAARKYGF-DNILFAETLEEAVKKAYEIAKPGDVVLLSPACASWDMFKNFEERGRLFKELV 447 (450)
T ss_pred HHhhCCEEEEEcCCHHHHHHHHhhCCC-CcEEEeCCHHHHHHHHHHhCCCCCEEEEChhhhccccccCHHHHHHHHHHHH
Confidence 54 368888889888888887754432 1345678999999999988999999999988899999999999999999999
Q ss_pred hc
Q 015701 400 FS 401 (402)
Q Consensus 400 ~~ 401 (402)
.+
T Consensus 448 ~~ 449 (450)
T PRK14106 448 LE 449 (450)
T ss_pred Hh
Confidence 86
No 18
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.6e-59 Score=449.17 Aligned_cols=359 Identities=19% Similarity=0.270 Sum_probs=295.3
Q ss_pred eeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCce--eeeccCch
Q 015701 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA--FVGGNLGN 80 (402)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~--~~~g~~g~ 80 (402)
+.||+|+|++++|||+++|+++++|+++|+++|++++ +..+.|+|+|||||||||+||+++|.++|+.+ ..+|.+..
T Consensus 68 ~~VV~s~Ai~~~NpEi~~A~e~~ipi~~r~e~Laelm-~~~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iGG~~~~ 146 (459)
T COG0773 68 DVVVVSNAIKEDNPEIVAALERGIPVISRAEMLAELM-RFRTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIGGILKN 146 (459)
T ss_pred ceEEEecccCCCCHHHHHHHHcCCCeEcHHHHHHHHH-hCCeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEECccccc
Confidence 5689999999999999999999999999999999999 67899999999999999999999999999875 34554443
Q ss_pred hhhhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEE
Q 015701 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160 (402)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v 160 (402)
.-..... ...+|+|+|+++++-.++ +++|+++|||||+.||+|+|++++++.+++..+++.++..|.+|
T Consensus 147 ~g~na~~---------g~~~~fV~EADEsD~sFl--~~~P~~aIvTNid~DH~D~y~~~~~i~~~F~~f~~~vp~~G~~v 215 (459)
T COG0773 147 FGTNARL---------GSGDYFVAEADESDSSFL--HYNPRVAIVTNIEFDHLDYYGDLEAIKQAFHHFVRNVPFYGRAV 215 (459)
T ss_pred CCccccc---------CCCceEEEEecccccccc--cCCCCEEEEeCCCcchhhhhCCHHHHHHHHHHHHHhCCccceEE
Confidence 3332222 223679999998886665 47999999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHhhc-ccccEEEeecCC--Ccee---ccccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHH
Q 015701 161 LPFGNQHLNEAIKG-HRFNLAWIGAFP--GVKI---DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234 (402)
Q Consensus 161 ~n~dd~~~~~~~~~-~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~ 234 (402)
+|.|||.++++... .+.++++||.+. ++.. ..+.....|.+...+. .+..+.+|+||+||+.|+++|+ ++
T Consensus 216 ~~~dd~~l~~l~~~~~~~~v~tyG~~~~ad~~a~ni~~~~~~~~F~V~~~g~--~~~~~~l~~pG~HNvlNAlaai--a~ 291 (459)
T COG0773 216 VCGDDPNLRELLSRGCWSPVVTYGFDDEADWRAENIRQDGSGTTFDVLFRGE--ELGEVKLPLPGRHNVLNALAAI--AV 291 (459)
T ss_pred EECCCHHHHHHHhcccCCcEEeecCCCcCcEEEEEeEEeccccEEEEEEcCc--eeEEEEEcCCchhhHHHHHHHH--HH
Confidence 99999999997765 667799999885 3322 2233333455544443 2345689999999999999999 99
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHccc----C-CCcEEEEEcCCCCcCCCC
Q 015701 235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----K-GHKCVILLGGQAKVLNGQ 309 (402)
Q Consensus 235 ~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~----~-~~~~i~V~g~~~~~~~~~ 309 (402)
++.+|++.+.|+++|++|+++++|||+++ ..+++++|||| +|+|..+.++|+++ + ++|+++||.++.-. +
T Consensus 292 a~~~Gi~~~~i~~aL~~F~GvkRRfe~~g-~~~~~~viDDY-aHHPtEI~aTL~aaR~~~~~~~rIvaifQPHryS---R 366 (459)
T COG0773 292 ARELGIDPEAIAEALASFQGVKRRFELKG-EVNGVTVIDDY-AHHPTEIKATLAAARQKVPGGKRIVAVFQPHRYS---R 366 (459)
T ss_pred HHHcCCCHHHHHHHHHhCCCcceeeEEee-eECCEEEEecC-CCCHHHHHHHHHHHHHhcCCCceEEEEECCCchH---h
Confidence 99999999999999999999999999997 47889999995 99999999988776 3 37999999876433 3
Q ss_pred CCcchHhhhhccccccEEEEeC-----CC-------hHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcC
Q 015701 310 ESNGFEKLIEPLNHHRCVITFG-----YS-------GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377 (402)
Q Consensus 310 ~~~~~~~~~~~l~~~d~vi~~g-----~~-------~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~ 377 (402)
.+..++++++.+..+|.|++.. +. .+.+.+.+++.+ +.. +++.++..+.+.+.+++||+||++
T Consensus 367 t~~~~~dF~~~l~~AD~v~l~~VY~A~e~~~~g~~~~~~l~~~i~~~~---~~~-~~~~~~~~~~l~~~~~~gD~il~m- 441 (459)
T COG0773 367 TRDLLDDFAKALSDADEVILLDVYAAGEEPIEGDVSSEDLAEKIRQPG---HVD-VPDLDDLVELLAKVAQPGDVILFM- 441 (459)
T ss_pred HHHHHHHHHHHHhcCCEEEEecccccCCCCCcCCccHHHHHHHhhcCC---ccc-CCCHHHHHHHHHhhCCCCCEEEEe-
Confidence 3457888999998899999973 22 345666666543 222 689999999999999999999885
Q ss_pred CCcccccccC
Q 015701 378 GCASFDEFRN 387 (402)
Q Consensus 378 G~~s~~~~~~ 387 (402)
|+|+++.+..
T Consensus 442 GAGdi~~~~~ 451 (459)
T COG0773 442 GAGDIGKIAR 451 (459)
T ss_pred cCCcHHHHHH
Confidence 9999976643
No 19
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=7.1e-59 Score=454.43 Aligned_cols=344 Identities=24% Similarity=0.371 Sum_probs=277.7
Q ss_pred eeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeeccCchhh
Q 015701 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (402)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~g~~~ 82 (402)
.++|+||+++++||++++|++ ++++++++.+.. .++|+||||||||||++||+++|+..|.. .+||+|.|+
T Consensus 56 d~vv~sp~i~~~~~~~~~a~~----i~~~~e~~~~~~---~~~i~ITGT~GKTTTt~ml~~iL~~~g~~--~~gniG~p~ 126 (401)
T PRK03815 56 DLEIPSPGIPPSHPLIQKAKN----LISEYDYFYDVM---PFSIWISGTNGKTTTTQMTTHLLEDFGAV--SGGNIGTPL 126 (401)
T ss_pred CEEEECCCCCCCCHHHHHHHH----HhhHHHHHHHhc---CCEEEEECCCcHHHHHHHHHHHHHHCCCc--EEEEecHhH
Confidence 579999999999999999987 699999998765 25999999999999999999999999843 588999987
Q ss_pred hhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEEe
Q 015701 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162 (402)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~n 162 (402)
+. + ..+.+++|+|+|+.+++.... ++|+++|||||++||+|+|+|+|+|.++|.+|++.+++++.+|+|
T Consensus 127 ~~--~--------~~~~~~~V~E~ss~~~~~~~~-~~p~iavitNi~~dHld~~~s~e~~~~~k~~i~~~~~~~~~~v~n 195 (401)
T PRK03815 127 AE--L--------DKNAKIWVLETSSFTLHYTNK-AKPNIYLLLPITPDHLSWHGSFENYVKAKLKPLKRMNEGDVAILP 195 (401)
T ss_pred Hh--c--------CCCCCEEEEECChHHhhCCcc-CCCcEEEEcCCcccchhhcCCHHHHHHHHHHHHhCCCcCCEEEEe
Confidence 75 2 234578999999877665544 799999999999999999999999999999999999889999999
Q ss_pred CCChhhHHHhhcccccEEEeecCCCceeccccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHcCCCH
Q 015701 163 FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242 (402)
Q Consensus 163 ~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~lgi~~ 242 (402)
.||+... ...++++|+...+. . . .+.+.. ..+.+.+. +++|+++|+ ++++.+|+
T Consensus 196 ~dd~~~~-----~~~~~~~fg~~~~~--~---~--~~~~~~---------~~~~~~~~-~~~NalaA~--a~a~~~G~-- 249 (401)
T PRK03815 196 KKFKNTP-----TKAQKIFYEDEEDL--A---E--KFGIDS---------EKINFKGP-FLLDALLAL--AVYKILFD-- 249 (401)
T ss_pred ccccccc-----cCCcEEEEecCCcc--c---c--ceeEeh---------HhcCCchH-HHHHHHHHH--HHHHHhCc--
Confidence 9998642 12456677632111 0 0 111111 12334455 499999999 89999994
Q ss_pred HHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccCCCcEEEEEcCCCCcCCCCCCcchHhhhhccc
Q 015701 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322 (402)
Q Consensus 243 ~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~ 322 (402)
+.+.++|++|+|+++|||++. ..+|+.+||||||+||+|+.++++.++++|+++|+|+. +++ ..++++++.+.
T Consensus 250 ~~~~~~L~~f~~~~~R~e~~~-~~~gv~~idDs~~tn~~a~~~al~~~~~~~ii~IlGG~-~k~-----~~~~~l~~~~~ 322 (401)
T PRK03815 250 ELDYERLNAFKIGKHKLEEFR-DKQGRLWVDDSKATNVDATLQALKRYKDKKIHLILGGD-DKG-----VDLTPLFEFMK 322 (401)
T ss_pred HHHHHHHHhCCCCCceEEEEE-EECCEEEEECCCCCCHHHHHHHHHhCCCCCEEEEECCC-CCC-----CCHHHHHHHHH
Confidence 556678999999999999996 36889999999999999999999999656789999953 222 24567877775
Q ss_pred ccc-EEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCcccccccChhHHhHHHHHHHhc
Q 015701 323 HHR-CVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 401 (402)
Q Consensus 323 ~~d-~vi~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~~s~~~~~~~~~r~~~~~~~~~~ 401 (402)
..+ .++++|+....+.+.++..+. ++..+++.++|++.+.+.+++||+||++|||.||++|+||++||..|+++|++
T Consensus 323 ~~~~~v~~~G~~~~~~~~~~~~~~~--~~~~~~~~e~av~~~~~~~~~gdvVLlSPa~aSfd~f~ny~~RG~~F~~~v~~ 400 (401)
T PRK03815 323 NLNIELYAIGSNTEKIQALAKEFNI--KAFVCEFLEKAVEEIKKVLKQNEVALLSPAAASLDQFKSYKERGEKFKAFVLK 400 (401)
T ss_pred hhCcEEEEECCCHHHHHHHHhcCCC--eEEEeCCHHHHHHHHHHhCCCCCEEEeChhhhccccccCHHHHHHHHHHHHHh
Confidence 433 488899988777776653321 34456789999999998899999999999999999999999999999999975
No 20
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=100.00 E-value=1.2e-55 Score=441.24 Aligned_cols=362 Identities=19% Similarity=0.285 Sum_probs=283.3
Q ss_pred ceeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCC--ceeeeccCc
Q 015701 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI--EAFVGGNLG 79 (402)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~--~~~~~g~~g 79 (402)
.+++|+||+++++||++++|+++++|+++++++++++. ++.++|+||||||||||++||+++|+..|. .+..+|+++
T Consensus 59 ~d~vV~spgi~~~~p~~~~a~~~~i~v~~~~el~~~~~-~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~~~ 137 (448)
T TIGR01082 59 ADVVVVSAAIKDDNPEIVEAKERGIPVIRRAEMLAELM-RFRHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGGLVK 137 (448)
T ss_pred CCEEEECCCCCCCCHHHHHHHHcCCceEeHHHHHHHHH-hcCcEEEEECCCChHHHHHHHHHHHHHcCCCCeEEECcccc
Confidence 36899999999999999999999999999999999887 456899999999999999999999999997 556788888
Q ss_pred hhhhhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEEEEecCCcchhc-CCCCHHHHHHHHHHhccccCCCeE
Q 015701 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLE-RHKTMKNYALTKCHLFSHMVNTKL 158 (402)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~-~~~t~e~i~~~k~~i~~~~~~~~~ 158 (402)
.+...... ...+++|+|+|++++.. ..++|+++|||||++||++ +|+|+|+|+++|.++++.+++++.
T Consensus 138 ~~~~~~~~---------~~~~~~V~E~s~~q~~~--~~~~p~vaVitNI~~DHld~~~~s~e~y~~aK~~i~~~~~~~~~ 206 (448)
T TIGR01082 138 EAGTNARL---------GSGEYLVAEADESDASF--LHLQPNVAIVTNIEPDHLDTYGSSFERLKAAFEKFIHNLPFYGL 206 (448)
T ss_pred cCCccccc---------CCCCEEEEECCCccchH--hhccCCEEEEecCChhhcchhcCCHHHHHHHHHHHHHhCCCCCE
Confidence 77554321 23578999999987755 3489999999999999999 889999999999999998888899
Q ss_pred EEEeCCChhhHHHhhcccccEEEeecC-CC--cee---ccccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHH
Q 015701 159 GLLPFGNQHLNEAIKGHRFNLAWIGAF-PG--VKI---DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALS 232 (402)
Q Consensus 159 ~v~n~dd~~~~~~~~~~~~~~~~~~~~-~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~ 232 (402)
+|+|.||+.+..+......++.+|+.. .. +.. ........|.....+. ......++++|.||++|+++|+
T Consensus 207 ~V~n~dd~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~G~hn~~N~~aA~-- 282 (448)
T TIGR01082 207 AVICADDPVLRELVPKATEQVITYGGSGEDADYRAENIQQSGAEGKFSVRGKGK--LYLEFTLNLPGRHNVLNALAAI-- 282 (448)
T ss_pred EEEECCCHHHHHHHhhcCCCEEEeCCCCCCCcEEEEEEEecCCeEEEEEEECCc--eEEEEEecCccHhHHHHHHHHH--
Confidence 999999999887765545567777753 11 111 1011111222221111 1113468999999999999999
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccC----CCcEEEEEcCCCCcCCC
Q 015701 233 VLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNG 308 (402)
Q Consensus 233 a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~~~~~~~ 308 (402)
+++..+|++.+.+.++|++|++++||||++. ..+++.+||| +||||.++.++++.+. ++|+++|+|+.+..
T Consensus 283 a~~~~lgi~~~~i~~~l~~f~~~~~R~e~~~-~~~gv~~i~D-~ahn~~~~~a~~~al~~~~~~~~ii~i~g~~~~~--- 357 (448)
T TIGR01082 283 AVALELGIDFEAILRALANFQGVKRRFEILG-EFGGVLLIDD-YAHHPTEIKATLKAARQGYPDKRIVVVFQPHRYS--- 357 (448)
T ss_pred HHHHHcCCCHHHHHHHHHhCCCCCccceEEE-EeCCeEEEEc-CCCCHHHHHHHHHHHHHhcCCCeEEEEECCCCCc---
Confidence 8899999999999999999999999999996 3678999999 5999999999887763 35789999863211
Q ss_pred CCCcchHhhhhccccccEEEEe-----------CCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcC
Q 015701 309 QESNGFEKLIEPLNHHRCVITF-----------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377 (402)
Q Consensus 309 ~~~~~~~~~~~~l~~~d~vi~~-----------g~~~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~ 377 (402)
..+..+.++++.+..+|.++++ |...+.+.+.+++.+. ..+..++++++|++.+.+.+++||+||++
T Consensus 358 r~k~~~~~~~~~l~~~d~v~l~~~~~~~~~~~~g~~~~~i~~~~~~~~~-~~~~~~~~~~~a~~~a~~~a~~gD~VLl~- 435 (448)
T TIGR01082 358 RTRDLFDDFAKVLSDADELILLDIYAAGEEPINGIDGKSLARKITQLGK-IEPYFVPDLAELVEFLAAVLQSGDLILTM- 435 (448)
T ss_pred cHHHHHHHHHHHHHhCCEEEEecccCCCCCCCCCCCHHHHHHHHhhcCC-CceEEeCCHHHHHHHHHHhcCCCCEEEEE-
Confidence 1112356677776667888776 5556778887765331 23556789999999999999999999886
Q ss_pred CCccccccc
Q 015701 378 GCASFDEFR 386 (402)
Q Consensus 378 G~~s~~~~~ 386 (402)
|+|++..+.
T Consensus 436 G~g~~~~~~ 444 (448)
T TIGR01082 436 GAGDIIKLA 444 (448)
T ss_pred CCCCHHHHH
Confidence 999887654
No 21
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.9e-55 Score=435.71 Aligned_cols=349 Identities=28% Similarity=0.455 Sum_probs=276.3
Q ss_pred eeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhC-CCCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeeccCchh
Q 015701 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (402)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~-~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~g~~ 81 (402)
+++|.+|.++++||.+.+|+++|+++.++.+++.+.. ..+.++|+||||||||||++||+++|+..|.++.+.||+|.|
T Consensus 61 dlvV~s~gi~~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~GniG~p 140 (418)
T PRK00683 61 DLVVRSPGIKKEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGIPAFAMGNIGIP 140 (418)
T ss_pred CEEEECCCCCCCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCCCeEEECCcCHH
Confidence 6899999999999999999999999999999865542 125689999999999999999999999999988999999999
Q ss_pred hhhhhhhhccCCCCCCCccEEEEEeCcccccCCCc-cccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEE
Q 015701 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160 (402)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~-~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v 160 (402)
+... ..+.+++|+|+|++++..... ...|+++|||||++||+++|+|+|+|+++|.+++..+..
T Consensus 141 ~l~~----------~~~~~~~V~E~~s~~~~~~~~~~~~~~iavitNi~~dHld~~~s~e~y~~aK~~i~~~~~~----- 205 (418)
T PRK00683 141 ILDG----------MQQPGVRVVEISSFQLADQEKSYPVLSGGMILNISDNHLDYHGNLSAYFQAKQNIAKCLRN----- 205 (418)
T ss_pred HHHH----------hhcCCEEEEEechhhhCcCcccCCCccEEEEecCChhHhccCCCHHHHHHHHHHHHHhhhC-----
Confidence 7432 123578999999987765433 234499999999999999999999999999999975432
Q ss_pred EeCCChhhHHHhhcccccEEEeecCCCceeccccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHH-cC
Q 015701 161 LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD-IG 239 (402)
Q Consensus 161 ~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~-lg 239 (402)
.|+.... ...+++.+ .. ...... +.....+ ..++++|.||++|+++|+ ++++. +|
T Consensus 206 --~~~~~~~--------~~~~~~~~--~~-~~~~~~--~~~~~~~-------~~~~~~g~hn~~Na~aA~--a~~~~l~g 261 (418)
T PRK00683 206 --PDDLWVG--------DERSYGHS--YL-EYVQEI--MRLLDKG-------SALKPLYLHDRYNYCAAY--ALANEVFP 261 (418)
T ss_pred --ccccccc--------ccCCcCce--ee-cCcchh--hhhhccc-------cccCCCccchHHHHHHHH--HHHHHhcC
Confidence 2222110 01122211 00 000000 0000001 146789999999999999 88888 69
Q ss_pred CCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccCCCcEEEEEcCCCCcCCCCCCcchHhhhh
Q 015701 240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319 (402)
Q Consensus 240 i~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~ 319 (402)
++.+++.++|++|++++||||++. ..++..+|||+||+||+|++++++.++ +|+++|+|++.+.++ +.++++
T Consensus 262 ~~~~~i~~~l~~~~~~~~R~e~v~-~~~g~~~i~Ds~~t~~~s~~~al~~~~-~~~i~vlG~~~~~~d------~~~l~~ 333 (418)
T PRK00683 262 ISEESFLEAVATFEKPPHRMEYLG-EKDGVHYINDSKATTVSAVEKALLAVG-NQVIVILGGRNKGCD------FSSLLP 333 (418)
T ss_pred CCHHHHHHHHHhCCCCCCceEEEe-ecCCeEEEEcCCCCCHHHHHHHHHhCC-CCEEEEEcCCCCCCC------HHHHHH
Confidence 999999999999999999999996 357899999999999999999999874 579999998765443 445665
Q ss_pred cccc-ccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCcccccccChhHHhHHHHHH
Q 015701 320 PLNH-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398 (402)
Q Consensus 320 ~l~~-~d~vi~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~~s~~~~~~~~~r~~~~~~~ 398 (402)
.+.. .|.++++|++...+.+.++.. . .+.+++|+++|++.+.+.++++|+||+.||++||++|++|+.||.+|+++
T Consensus 334 ~~~~~~~~v~~~G~~~~~i~~~l~~~-~--~~~~~~~~~~a~~~~~~~~~~gd~VLlsp~~~s~d~f~~~~~RG~~F~~~ 410 (418)
T PRK00683 334 VLRQTAKHVVAMGECRQEIAQALSEK-F--PLTVVKDLQEAVSCAQEIAQPGDVILLSPGCASFDQFRSFEERGAMFKQL 410 (418)
T ss_pred HHHHhCCEEEEECCCHHHHHHHHhcC-C--CEEEeCCHHHHHHHHHHhCCCCCEEEECchhcccccccCHHHHHHHHHHH
Confidence 5543 788999999988888877643 1 34567899999999999999999999999999999999999999999999
Q ss_pred Hhc
Q 015701 399 AFS 401 (402)
Q Consensus 399 ~~~ 401 (402)
|+.
T Consensus 411 v~~ 413 (418)
T PRK00683 411 VGM 413 (418)
T ss_pred HHH
Confidence 974
No 22
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=3.2e-55 Score=439.62 Aligned_cols=364 Identities=18% Similarity=0.233 Sum_probs=278.9
Q ss_pred ceeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCc--eeeeccCc
Q 015701 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLG 79 (402)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~--~~~~g~~g 79 (402)
..++|+||+++++||++++|+++++|+++++|++.++. ++.++|+||||||||||++||+++|+..|.. +.++|+++
T Consensus 67 ~d~vv~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~-~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~~~ 145 (461)
T PRK00421 67 ADVVVYSSAIPDDNPELVAARELGIPVVRRAEMLAELM-RFRTSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFLIGGILN 145 (461)
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHH-ccCcEEEEECCCCHHHHHHHHHHHHHhcCCCCeEEECceec
Confidence 36899999999999999999999999999999999876 4558999999999999999999999999964 45666654
Q ss_pred hhhhhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEE
Q 015701 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLG 159 (402)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~ 159 (402)
.+..... ..+.+++|+|+|+++.... .++|+++|||||++||+++|+|+|+|+++|.+++..+++++.+
T Consensus 146 ~~~~~~~---------~~~~~~~V~E~ss~q~~~~--~~~p~vaViTNI~~DHld~~gt~e~y~~ak~k~~~~~~~~~~~ 214 (461)
T PRK00421 146 AAGTNAR---------LGNSDYFVAEADESDRSFL--KLHPDIAIVTNIDADHLDYYGDFEDLKDAFQEFAHNLPFYGAL 214 (461)
T ss_pred cCCcccc---------cCCCCEEEEECCCccchHh--hcCCCEEEEccCChhhccccCCHHHHHHHHHHHHhcCCCCCEE
Confidence 4322111 1246789999998876432 4799999999999999999999999999999999888888999
Q ss_pred EEeCCChhhHHHhhcccccEEEeecCC--Cceec---cccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHH
Q 015701 160 LLPFGNQHLNEAIKGHRFNLAWIGAFP--GVKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234 (402)
Q Consensus 160 v~n~dd~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~ 234 (402)
|+|.||+.+..+......++++|+... ++... .......|.+...+.. +....++++|.||++|+++|+ ++
T Consensus 215 V~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~l~l~G~h~~~N~~aA~--a~ 290 (461)
T PRK00421 215 VACGDDPELRELLPRVSRPVITYGFSEDADFRAENIRQDGGGTHFDVLRRGEV--LGDFTLPLPGRHNVLNALAAI--AV 290 (461)
T ss_pred EEECCCHHHHHHHHhcCCCEEEecCCCCCcEEEEEEEEcCCceEEEEEECCce--EEEEEecCCcHHHHHHHHHHH--HH
Confidence 999999988887765556778887532 22111 0111122322211111 113468999999999999999 88
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccC----CCcEEEEEcCCCCcCCCCC
Q 015701 235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQE 310 (402)
Q Consensus 235 ~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~~~~~~~~~ 310 (402)
+..+|++++.|.++|++|++++||||++. ..+++.+|+| ++|||.++.++++.+. ++|+++|+|..+....
T Consensus 291 ~~~lgv~~~~i~~~l~~f~~~~~R~e~~~-~~~g~~~i~D-~aHnp~~~~a~~~al~~~~~~~~i~~v~gp~~~~r~--- 365 (461)
T PRK00421 291 ALELGIDDEAIREALATFKGVKRRFEEKG-EVGGVVLIDD-YAHHPTEIKATLKAARQGYPDKRIVAVFQPHRYSRT--- 365 (461)
T ss_pred HHHcCCCHHHHHHHHHhCCCCCcccEEEE-ecCCcEEEEe-CCCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCccH---
Confidence 99999999999999999999999999996 3567889999 4999999999887763 2688999983321111
Q ss_pred CcchHhhhhccccccEEEEe-----------CCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCC
Q 015701 311 SNGFEKLIEPLNHHRCVITF-----------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 379 (402)
Q Consensus 311 ~~~~~~~~~~l~~~d~vi~~-----------g~~~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~ 379 (402)
.....++++.+..+|.++++ +.+.+.+.+.++..+ ..+..++++++|++.+.+.+++||+||++ |+
T Consensus 366 kd~~~~~~~~l~~~d~vi~~~~~~~~e~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~a~~~a~~~a~~gD~vlv~-G~ 442 (461)
T PRK00421 366 RDLLDEFAEALSDADEVILLDIYAAGEEPIGGVDSEDLARKIKRGH--RDPIFVPDLEDLAELLAEVLKPGDLVLTM-GA 442 (461)
T ss_pred HHHHHHHHHHHHHCCEEEEcCccCCCCCCCCCCCHHHHHHHHhccC--CceEEeCCHHHHHHHHHHhcCCCCEEEEE-CC
Confidence 11233466655447777776 223467777776422 24556789999999999999999999885 99
Q ss_pred cccccccChh
Q 015701 380 ASFDEFRNFE 389 (402)
Q Consensus 380 ~s~~~~~~~~ 389 (402)
++++.+....
T Consensus 443 g~~~~~~~~~ 452 (461)
T PRK00421 443 GDITKLARAL 452 (461)
T ss_pred CCHHHHHHHH
Confidence 9988766533
No 23
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=100.00 E-value=1.2e-55 Score=440.95 Aligned_cols=362 Identities=18% Similarity=0.255 Sum_probs=272.2
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeecc----Cc
Q 015701 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LG 79 (402)
Q Consensus 4 ~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~----~g 79 (402)
.+|+++++++++|.++ .++....+..+....+.. .+.++|+||||||||||++||+++|+..|.++.+.|+ +|
T Consensus 64 ~vv~~~~~~~~~p~i~--v~d~~~al~~la~~~~~~-~~~~vI~VTGSnGKTTT~~ml~~iL~~~g~~~~t~gn~n~~~G 140 (453)
T PRK10773 64 ALLVSRPLDIDLPQLV--VKDTRLAFGQLAAWVRQQ-VPARVVALTGSSGKTSVKEMTAAILRQCGNTLYTAGNLNNDIG 140 (453)
T ss_pred EEEEecCcCCCCCEEE--ECCHHHHHHHHHHHHHhc-CCCCEEEEcCCCchHHHHHHHHHHHHhcCcccccCccccCCcc
Confidence 4567776655666644 122223343333333322 2468999999999999999999999999988877777 45
Q ss_pred hhhhhhhhhhccCCCCCCCccEEEEEeCc---ccccCCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCC
Q 015701 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSS---YQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNT 156 (402)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~V~E~~~---~~l~~~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~ 156 (402)
.|.+... ..++++++|+|+|+ ++++.....++|+++|||||++||+++|+|+|+|+++|.+|++.++++
T Consensus 141 ~~~~~~~--------~~~~~~~~V~E~g~~~~gei~~~~~~~~p~iaViTNI~~dHld~~gs~e~~~~aK~~l~~~~~~~ 212 (453)
T PRK10773 141 VPLTLLR--------LTPEHDYAVIELGANHQGEIAYTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPEN 212 (453)
T ss_pred cccHHhc--------CCCCCcEEEEEcCCCCcchhHHhcCccCCCEEEEeCCCHHHHhhcCCHHHHHHHHHHHHcccCCC
Confidence 5544322 14568899999995 334333335899999999999999999999999999999999988888
Q ss_pred eEEEEeCCChhhHHHhhcccc-cEEEeecCC----Ccee---ccccccceEEEecCCeeeEEeeeccCcCChhhHHHHHH
Q 015701 157 KLGLLPFGNQHLNEAIKGHRF-NLAWIGAFP----GVKI---DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAV 228 (402)
Q Consensus 157 ~~~v~n~dd~~~~~~~~~~~~-~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~ 228 (402)
+.+|+|.|||....+...... ++.+|+... ++.. ........|.+...+..+ .+.+|++|.||++|+++
T Consensus 213 g~~vln~Dd~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~---~~~l~l~G~hnv~Nala 289 (453)
T PRK10773 213 GIAIMNADSNDWLNWQSVIGSKTVWRFSPNAANSVDFTATNIHVTSHGTEFTLHTPTGSV---DVLLPLPGRHNIANALA 289 (453)
T ss_pred CEEEEECCcHhHHHHHHHhcCCcEEEEeCCCCCcCcEEEEEEEEeCCeeEEEEEecCceE---EEEecCCcHhHHHHHHH
Confidence 999999999987766543332 466777432 1211 111111223322111111 24789999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccC--CCcEEEEEcCCCCcC
Q 015701 229 AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAKVL 306 (402)
Q Consensus 229 A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~--~~~~i~V~g~~~~~~ 306 (402)
|+ +++..+|++++.|.++|++|+|++||||++.. .++.++|||+|||||+|++++++.+. .+|+++|+|+|.++|
T Consensus 290 Ai--a~a~~lGi~~~~i~~~L~~~~~~~gR~e~v~~-~~g~~iIDDsYn~nP~s~~aaL~~l~~~~~r~i~VlG~m~elG 366 (453)
T PRK10773 290 AA--ALAMSVGATLDAVKAGLANLKAVPGRLFPIQL-AEGQLLLDDSYNANVGSMTAAAQVLAEMPGYRVMVVGDMAELG 366 (453)
T ss_pred HH--HHHHHcCCCHHHHHHHHHhCCCCCCceeEEEC-CCCeEEEEcCCCCCHHHHHHHHHHHHhCCCCEEEEECChhhcc
Confidence 99 89999999999999999999999999999863 46789999999999999999998874 356799999999999
Q ss_pred CCCCCcchHhhhhccc--cccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCC--EEEEcCCCccc
Q 015701 307 NGQESNGFEKLIEPLN--HHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD--AIVLSPGCASF 382 (402)
Q Consensus 307 ~~~~~~~~~~~~~~l~--~~d~vi~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d--~vll~~G~~s~ 382 (402)
..+. ..|+++++.+. .+|.++++|+....+.+. .+. ..+++|.+++.+.+...+++|| +||++ |
T Consensus 367 ~~~~-~~h~~~~~~~~~~~~d~v~~~G~~~~~~~~~---~~~---~~~~~~~~~~~~~l~~~~~~gd~~~vL~K-g---- 434 (453)
T PRK10773 367 AESE-ACHRQVGEAAKAAGIDKVLSVGKLSHAISEA---SGV---GEHFADKTALIARLKALLAEHQVITILVK-G---- 434 (453)
T ss_pred hHHH-HHHHHHHHHHHHcCCCEEEEEChhHHHHHHh---cCC---CeeECCHHHHHHHHHHhhcCCCceEEEEE-e----
Confidence 8774 47888988775 479999999776655543 111 1356899999999999999999 47776 7
Q ss_pred ccccChhHHhHHHHHHHhc
Q 015701 383 DEFRNFEHRGMVFQELAFS 401 (402)
Q Consensus 383 ~~~~~~~~r~~~~~~~~~~ 401 (402)
+|++.||+++..
T Consensus 435 -------sr~~~le~i~~~ 446 (453)
T PRK10773 435 -------SRSAAMEEVVRA 446 (453)
T ss_pred -------CCcCCHHHHHHH
Confidence 599999998863
No 24
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=100.00 E-value=1.7e-54 Score=432.80 Aligned_cols=363 Identities=20% Similarity=0.227 Sum_probs=270.6
Q ss_pred ceeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCce-----eeec
Q 015701 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA-----FVGG 76 (402)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~-----~~~g 76 (402)
.+++|+||+++|+||++++|+++++|+++++|++++...+..++|+||||||||||++||+++|+..|.++ .+.|
T Consensus 61 ~d~vV~SpgI~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~~~~~g 140 (448)
T TIGR01081 61 PDLVVIGNAMKRGNPCVEAVLNLNLPYTSGPQWLHDFVLHDRWVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGGVPG 140 (448)
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCCCEEeHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEeCcccc
Confidence 36899999999999999999999999999999998753133459999999999999999999999999875 3567
Q ss_pred cCchhhhhhhhhhccCCCCCCCccEEEEEeCcccccCC---C-c-cccccEEEEecCCcchhcCCCCHHHHHHHHHHhcc
Q 015701 77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIP---N-K-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS 151 (402)
Q Consensus 77 ~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~---~-~-~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~ 151 (402)
|+|.|.. + . +.+++|+|+|++++... . . .++|+++|||||++||+++|+|+|+|+++|.++++
T Consensus 141 n~G~~~~---~--------~-~~~~~V~E~~s~~~~~~~~l~~~~~~~P~iaVITNI~~DHld~~~t~e~~~~~K~~i~~ 208 (448)
T TIGR01081 141 NFGVSAR---L--------G-ESPFFVIEADEYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIFDDLKAIQRQFHHLVR 208 (448)
T ss_pred cCccccc---c--------C-CCCEEEEEccCcCccccccccceeecCCCEEEEeCCChHhccccCCHHHHHHHHHHHHH
Confidence 8887753 1 1 35789999998876532 1 1 37999999999999999999999999999999999
Q ss_pred ccCCCeEEEEeCCChhhHHHhhc-ccccEEEeecCCCceecc-ccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHH
Q 015701 152 HMVNTKLGLLPFGNQHLNEAIKG-HRFNLAWIGAFPGVKIDT-EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVA 229 (402)
Q Consensus 152 ~~~~~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A 229 (402)
.+++++.+|+|.||+.+..+... ...++.+++....+.... ......+.+...+.. ...+.++++|.||++|+++|
T Consensus 209 ~~~~~~~~i~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~l~G~hn~~Na~~A 286 (448)
T TIGR01081 209 TVPGEGLILCPGRDQSLKDTLAKGCWSEQEFFGEQGEWQAEKITADGSHFDVLLDGEK--VGEVKWSLVGRHNMHNALMA 286 (448)
T ss_pred hCCCCCEEEEeCCCHHHHHHHHhccCCCeEEECCCCCEEEEEEecCCcEEEEEECCce--eEEEEecCCcHHHHHHHHHH
Confidence 87778899999999988765432 223455565322221110 001112222111111 11235799999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccCC----CcEEEEEcCCCCc
Q 015701 230 ALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG----HKCVILLGGQAKV 305 (402)
Q Consensus 230 ~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~----~~~i~V~g~~~~~ 305 (402)
+ +++..+|++.+.+.++|++|+++|||||++. ..++..+|||+ ||||+|++++++.++. +|+++|+|++.+.
T Consensus 287 ~--a~~~~lgi~~~~i~~~L~~~~~~~~R~e~~~-~~~g~~ii~D~-ahNp~s~~~~l~~l~~~~~~~~ii~I~g~~~~~ 362 (448)
T TIGR01081 287 I--AAARHVGVAIEDACEALGSFVNAKRRLELKG-EANGITVYDDF-AHHPTAIEATLQGLRQKVGGARILAVLEPRSNT 362 (448)
T ss_pred H--HHHHHcCCCHHHHHHHHHhCCCCCcceEEEE-ecCCeEEEEeC-CCCHHHHHHHHHHHHHhcCCCeEEEEECCCcch
Confidence 9 8899999999999999999999999999996 24678999997 9999999999998852 4679999976321
Q ss_pred CCCCCCcchHhhhhccccccEEEEeCCCh--HHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCcccc
Q 015701 306 LNGQESNGFEKLIEPLNHHRCVITFGYSG--VLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 383 (402)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~d~vi~~g~~~--~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~~s~~ 383 (402)
... .....++...+..+|.++++|... ..+.+.+...+ ..+..++++++|++.+.+.+++||+||++ |+|+++
T Consensus 363 ~~l--g~~~~~l~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~a~~gd~VLv~-gag~~~ 437 (448)
T TIGR01081 363 MKL--GVHKDDLAPSLGRADQVFLYQPGQIPWDVAEVAAQCV--QPANVSADFDAFVAMIVKNAQPGDHILVM-SNGGFG 437 (448)
T ss_pred hhh--hhHHHHHHHHHHhCCEEEEcCCCCCccCHHHHHHhcC--CCeEEcCCHHHHHHHHHHhCCCCCEEEEE-CCCCHH
Confidence 110 112334444444478888886542 22444443322 13456689999999999999999999886 999877
Q ss_pred cccC
Q 015701 384 EFRN 387 (402)
Q Consensus 384 ~~~~ 387 (402)
.+..
T Consensus 438 ~~~~ 441 (448)
T TIGR01081 438 GIHG 441 (448)
T ss_pred HHHH
Confidence 6543
No 25
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=100.00 E-value=2.5e-54 Score=427.88 Aligned_cols=327 Identities=22% Similarity=0.303 Sum_probs=257.1
Q ss_pred CCcEEEEecCCChhhHHHHHHHHHHhcCCceeeecc----CchhhhhhhhhhccCCCCCCCccEEEEEeC-cccccC--C
Q 015701 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVS-SYQMEI--P 114 (402)
Q Consensus 42 ~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~-~~~l~~--~ 114 (402)
+.++|+||||||||||++||+++|+..|..+.+.|+ +|.|.+... ...+++++|+|+| ++..+. .
T Consensus 73 ~~~vI~VTGTnGKTTt~~ll~~iL~~~g~~~~t~gn~n~~ig~p~~~l~--------~~~~~~~~VlE~g~s~~g~~~~~ 144 (417)
T TIGR01143 73 SGKVIGITGSSGKTTTKEMLAAILSHKYKVFATPGNFNNEIGLPLTLLR--------APGDHDYAVLEMGASHPGEIAYL 144 (417)
T ss_pred CCCEEEEcCCCchhHHHHHHHHHHhccCcEecCCCcCCCccchhHHHhc--------CCCCCeEEEEEeCCCCCCcHHHH
Confidence 568999999999999999999999999987777777 566655322 2457889999998 444332 2
Q ss_pred CccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEEeCCChhhHHHhhccc-ccEEEeecCC-Ccee--
Q 015701 115 NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR-FNLAWIGAFP-GVKI-- 190 (402)
Q Consensus 115 ~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~-~~~~~~~~~~-~~~~-- 190 (402)
...++|+++|||||+.||+++|+|+|+|+++|.++++.+++++.+|+|.|||....+..... .++++|+... ++..
T Consensus 145 ~~~~~p~vaviTNi~~dHld~~gs~e~~~~aK~~l~~~~~~~~~~vln~Dd~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (417)
T TIGR01143 145 AEIAKPDIAVITNIGPAHLEGFGSLEGIAEAKGEILQGLKENGIAVINADDPAFAKFAKRLPNKAILSFGFEGGDFSAAD 224 (417)
T ss_pred hCccCCCEEEEcCCcHHHhhhcCCHHHHHHHHHHHHcccCCCCEEEEeCCcHHHHHHHHhccCCcEEEECCCCCcEEEEE
Confidence 22479999999999999999999999999999999998888899999999998877765443 4577787532 1111
Q ss_pred -cccccc-ceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEEeecCC
Q 015701 191 -DTEAKT-ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQG 268 (402)
Q Consensus 191 -~~~~~~-~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~ 268 (402)
...... ..+.+...+... .+.+|++|.||++|+++|+ ++++.+|++++.|.++|++|+++|||||+. ..++
T Consensus 225 i~~~~~~~~~~~~~~~~~~~---~~~~~l~G~hn~~N~laAi--a~~~~lGi~~~~i~~~l~~~~~~~gR~e~~--~~~~ 297 (417)
T TIGR01143 225 ISYSALGSTGFTLVAPGGEF---EVSLPLLGRHNVMNALAAA--ALALELGIPLEEIAEGLAELKLVKGRFEIQ--TKNG 297 (417)
T ss_pred EEEcCCCCEEEEEEeCCceE---EEEccCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCCceeEE--cCCC
Confidence 111111 223322211111 2468999999999999999 899999999999999999999999999943 3678
Q ss_pred eEEEEcCCCCCHHHHHHHHcccCC--CcEEEEEcCCCCcCCCCCCcchHhhhhcccc--ccEEEEeCCChHHHHHHHHhC
Q 015701 269 VTWVDDSKATNLEATCTGLMDLKG--HKCVILLGGQAKVLNGQESNGFEKLIEPLNH--HRCVITFGYSGVLIWKTLVNN 344 (402)
Q Consensus 269 ~~iidD~~a~np~s~~~al~~~~~--~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~--~d~vi~~g~~~~~~~~~l~~~ 344 (402)
+.+|||+|||||+|++++++.++. +|+++|+|+|.+.|+++. ..+.++++.+.. .|.++++|++.+.+.+.+..
T Consensus 298 ~~vidDsya~np~s~~~al~~l~~~~~r~i~VlG~~~e~G~~~~-~~~~~l~~~~~~~~~d~vi~~g~~~~~~~~~~~~- 375 (417)
T TIGR01143 298 LTLIDDTYNANPDSMRAALDALARFPGKKILVLGDMAELGEYSE-ELHAEVGRYANSLGIDLVFLVGEEAAVIYDSLGC- 375 (417)
T ss_pred cEEEEcCCCCCHHHHHHHHHHHHhCCCCEEEEEcCchhcChHHH-HHHHHHHHHHHHcCCCEEEEECHHHHHHHHhccc-
Confidence 999999999999999999998852 588999999988887763 356677777643 59999999988777665421
Q ss_pred CCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCcccccccChhHHhHHHHHHHhc
Q 015701 345 GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 401 (402)
Q Consensus 345 ~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~~s~~~~~~~~~r~~~~~~~~~~ 401 (402)
...++++.+++.+.+.+.+++||+||++ | +|++.||++++.
T Consensus 376 ----~~~~~~~~~~~~~~l~~~~~~~d~VLlk-G-----------Sr~~~le~~~~~ 416 (417)
T TIGR01143 376 ----KGFHFADKDELLAFLKLELGEGDVVLVK-G-----------SRSVKLEKVVEA 416 (417)
T ss_pred ----CcEEECCHHHHHHHHHHhcCCCCEEEEE-e-----------CCcCcHHHHHhh
Confidence 2345789999999999999999999997 7 599999999864
No 26
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=1.6e-53 Score=428.31 Aligned_cols=331 Identities=19% Similarity=0.187 Sum_probs=257.9
Q ss_pred CCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeeccC----chhhhhhhhhhccCCCCCCCccEEEEEeC-cccccC--
Q 015701 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL----GNPLSEAAFHCIALPSSKPKFQVAVVEVS-SYQMEI-- 113 (402)
Q Consensus 41 ~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~----g~~~~~~~~~~~~~~~~~~~~~~~V~E~~-~~~l~~-- 113 (402)
.+.++|+||||||||||++||+++|+..|.++.+.|++ |.|.+... ...+.+++|+|+| ++..+.
T Consensus 106 ~~~~vIgVTGS~GKTTT~~ml~~iL~~~g~~~~~~g~~n~~iG~p~~l~~--------~~~~~~~~V~E~g~s~~~e~~~ 177 (479)
T PRK14093 106 LEAKVIAVTGSVGKTSTKEALRGVLGAQGETHASVASFNNHWGVPLSLAR--------CPADARFAVFEIGMNHAGEIEP 177 (479)
T ss_pred cCCCEEEEcCCCCccHHHHHHHHHHHhcCCccCCCccCCCccchhHHHHc--------CCCCCcEEEEEeCCCCCchHHH
Confidence 46789999999999999999999999999877666654 55544222 2356789999999 454442
Q ss_pred CCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEEeCCChhhHHHhhccc----ccEEEeecCCCce
Q 015701 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR----FNLAWIGAFPGVK 189 (402)
Q Consensus 114 ~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~----~~~~~~~~~~~~~ 189 (402)
....++|+++|||||+.||+++|+|+|+|+++|.++++.+++++.+|+|.|||....+..... .++++||.+...+
T Consensus 178 ~~~~~~PdiaViTNI~~DHLd~~gt~e~~~~aK~~l~~~~~~~g~~VlN~Dd~~~~~l~~~~~~~~~~~vi~~g~~~~~~ 257 (479)
T PRK14093 178 LVKMVRPHVAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPGGAAVLNRDNPQFDRLAASARAAGIARIVSFGADEKAD 257 (479)
T ss_pred HhcccCCCEEEEcCCCHHHHhhcCCHHHHHHHHHHHHccCCCCCEEEEeCCcHHHHHHHHHhhhccCCcEEEEeCCCCcc
Confidence 223489999999999999999999999999999999998888899999999999877654322 2577888542211
Q ss_pred e--c---cccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEEe
Q 015701 190 I--D---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264 (402)
Q Consensus 190 ~--~---~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~ 264 (402)
+ . .......+.....+... .+.+|++|.||++|+++|+ +++..+|++.++|.++|++|+|++||++.+..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~l~~~~~~~gR~~~~r~ 332 (479)
T PRK14093 258 ARLLDVALHADCSAVHADILGHDV---TYKLGMPGRHIAMNSLAVL--AAAELAGADLALAALALSQVQPAAGRGVRHTL 332 (479)
T ss_pred EEEEEEEEcCCceEEEEEECCceE---EEEecCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCcCCcceEEEe
Confidence 1 1 01111122222211112 2478999999999999999 89999999999999999999999999998632
Q ss_pred e--cCCeEEEEcCCCCCHHHHHHHHcccC------CCcEEEEEcCCCCcCCCCCCcchHhhhhccc--cccEEEEeCCCh
Q 015701 265 D--IQGVTWVDDSKATNLEATCTGLMDLK------GHKCVILLGGQAKVLNGQESNGFEKLIEPLN--HHRCVITFGYSG 334 (402)
Q Consensus 265 ~--~~~~~iidD~~a~np~s~~~al~~~~------~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~--~~d~vi~~g~~~ 334 (402)
. .++.++|||+|||||+|++++++.+. ++|+|+|||+|.++|.++. ..|+++++.+. .+|.|+++|+..
T Consensus 333 ~~~~~~~~iIDDsYahnP~s~~aaL~~l~~~~~~~~~r~i~V~G~m~elg~~~~-~~h~~~~~~~~~~~~d~v~~~G~~~ 411 (479)
T PRK14093 333 EVGGGEATLIDESYNANPASMAAALGVLGRAPVGPQGRRIAVLGDMLELGPRGP-ELHRGLAEAIRANAIDLVFCCGPLM 411 (479)
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHHHHhhhccCCCCEEEEECChHHcCcHHH-HHHHHHHHHHHHcCCCEEEEEchhH
Confidence 1 24589999999999999999998773 3589999999999998764 46888998886 479999999877
Q ss_pred HHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCcccccccChhHHhHHHHHHHh
Q 015701 335 VLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAF 400 (402)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~~s~~~~~~~~~r~~~~~~~~~ 400 (402)
..+.+.++.. . ...+++|.+++.+++...+++||+||++ | +|++.||+++.
T Consensus 412 ~~~~~~~~~~-~--~~~~~~~~~~~~~~l~~~~~~gd~vL~k-G-----------Sr~~~le~i~~ 462 (479)
T PRK14093 412 RNLWDALSSG-K--RGGYAEDAAALESQVVAAIRAGDVIMVK-G-----------SLGSRMKTIVT 462 (479)
T ss_pred HHHHHhhccc-c--cceeeCCHHHHHHHHHHhcCCCCEEEEE-c-----------CCcCCHHHHHH
Confidence 7666654321 1 1135789999999999999999999997 7 59999999886
No 27
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.1e-53 Score=414.69 Aligned_cols=328 Identities=23% Similarity=0.324 Sum_probs=272.1
Q ss_pred CCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeecc----CchhhhhhhhhhccCCCCCCCccEEEEEeCc---ccccC
Q 015701 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSS---YQMEI 113 (402)
Q Consensus 41 ~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~---~~l~~ 113 (402)
.+.++|+||||+|||||++|++++|+..|....+.|| +|.|++...+ ..+++++|+|+|. |.++.
T Consensus 101 ~~~kvIaITGS~GKTTTKe~la~iL~~~~~v~~t~gn~Nn~iGlPltll~~--------~~~~e~~VlEmG~~~~GeI~~ 172 (451)
T COG0770 101 FNAKVIAITGSNGKTTTKEMLAAILSTKGKVHATPGNFNNEIGLPLTLLRL--------PADTEYAVLEMGMNHPGEIAE 172 (451)
T ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHhhcCeEecCCCccCccccchhHHHhC--------CCcccEEEEEcCCCCCCcHHH
Confidence 4789999999999999999999999999988877776 6888887765 5568999999994 45555
Q ss_pred CCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEEeCCChhhHHHhhcc-cccEEEeecCC--Cce-
Q 015701 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH-RFNLAWIGAFP--GVK- 189 (402)
Q Consensus 114 ~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~n~dd~~~~~~~~~~-~~~~~~~~~~~--~~~- 189 (402)
+....+|+++|||||+.+|+++|+|.|.++++|.+++..++++|++|+|.|++......... ..++.+|+... ++.
T Consensus 173 l~~i~~P~iavItnIg~aHle~fgs~e~Ia~aK~Ei~~~~~~~g~ai~n~d~~~~~~~~~~~~~~~v~~fg~~~~~d~~~ 252 (451)
T COG0770 173 LSEIARPDIAVITNIGEAHLEGFGSREGIAEAKAEILAGLRPEGIAILNADNPLLKNWAAKIGNAKVLSFGLNNGGDFRA 252 (451)
T ss_pred HhcccCCCEEEEcChhHHHHHhcCCHHHHHHHHHHHHhccCCCcEEEEECccHHHHHHHhhcCCCcEEEEcCCCCCceee
Confidence 55568999999999999999999999999999999999999999999999999977766554 46788888641 221
Q ss_pred --eccccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEEeecC
Q 015701 190 --IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQ 267 (402)
Q Consensus 190 --~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~ 267 (402)
+..+..+..|.....+.+. .+.+|++|+||+.|+++|+ ++++.+|++.++|+++|+.+++++||+|++. ..+
T Consensus 253 ~~i~~~~~~~~f~~~~~~~~~---~~~l~~~G~hn~~NalaA~--a~a~~lG~~~e~i~~~L~~~~~~~gR~~~~~-~~~ 326 (451)
T COG0770 253 TNIHLDEEGSSFTLDIEGGEA---EFELPLPGRHNVTNALAAA--ALALELGLDLEEIAAGLKELKPVKGRLEVIL-LAN 326 (451)
T ss_pred EEEEEcCCceEEEEEecCceE---EEEecCCcHhHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcCCCCccceeEe-cCC
Confidence 1222223444444333332 2579999999999999999 9999999999999999999999999999554 478
Q ss_pred CeEEEEcCCCCCHHHHHHHHccc---CCCcEEEEEcCCCCcCCCCCCcchHhhhhcccc--ccEEEEeCCChHHHHHHHH
Q 015701 268 GVTWVDDSKATNLEATCTGLMDL---KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH--HRCVITFGYSGVLIWKTLV 342 (402)
Q Consensus 268 ~~~iidD~~a~np~s~~~al~~~---~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~--~d~vi~~g~~~~~~~~~l~ 342 (402)
+.++|||+||.||+||+++++.+ +.++.|+|+|+|.++|+.+. +.|+++++.+.. .|.++++|+..+.+.+.+.
T Consensus 327 g~~iIdD~YNAnp~sm~aai~~l~~~~~~~~i~VlGdM~ELG~~s~-~~H~~v~~~~~~~~~d~v~~~G~~~~~i~~~~~ 405 (451)
T COG0770 327 GKTLIDDSYNANPDSMRAALDLLAALPGRKGIAVLGDMLELGEESE-ELHEEVGEYAVEAGIDLVFLVGELSKAIAEALG 405 (451)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHhhCccCCcEEEeCChhhhCccHH-HHHHHHHHHHHhcCceEEEEEccchHHHHHhcC
Confidence 89999999999999999999876 34444999999999997764 468889988764 6899999998888887774
Q ss_pred hCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCcccccccChhHHhHHHHHHHh
Q 015701 343 NNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAF 400 (402)
Q Consensus 343 ~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~~s~~~~~~~~~r~~~~~~~~~ 400 (402)
.. ..++.+.++.++.+...++++|+||++ | +|++.+++++.
T Consensus 406 ~~-----~~~f~~~~~l~~~l~~~l~~gd~vLvK-g-----------Sr~~~le~vv~ 446 (451)
T COG0770 406 NK-----GIYFADKEELITSLKALLRKGDVVLVK-G-----------SRGMKLEKVVD 446 (451)
T ss_pred CC-----eEecCCHHHHHHHHHHhcCCCCEEEEE-c-----------CccccHHHHHH
Confidence 31 567788899999999999999999997 6 59999999875
No 28
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=3.2e-50 Score=436.08 Aligned_cols=330 Identities=19% Similarity=0.232 Sum_probs=257.8
Q ss_pred CCCcEEEEecCCChhhHHHHHHHHHHhc---CCceeeecc----CchhhhhhhhhhccCCCCCCCccEEEEEeCcc---c
Q 015701 41 RSIKILAVTGTNGKSTVVTFVGQMLNHL---GIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY---Q 110 (402)
Q Consensus 41 ~~~~vI~VTGT~GKTTt~~ml~~iL~~~---g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~---~ 110 (402)
.+.++|+||||||||||++||+++|+.. +..+.+.|+ +|.|++...+ ..+.+++|+|+|++ +
T Consensus 601 ~~~~vI~VTGTnGKTTT~~ml~~iL~~~~~~~~~~~t~gn~n~~~g~~~~l~~~--------~~~~~~~VlE~s~~~~g~ 672 (958)
T PRK11929 601 FSLPVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEGNFNNEIGVPLTLLRL--------RAQHRAAVFELGMNHPGE 672 (958)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHHhcCCCCcEEccCcccCCCcchHHHHhcC--------CCCCcEEEEEeCCCCCcc
Confidence 3568999999999999999999999998 444556666 5666544321 45678899999964 4
Q ss_pred ccCCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEEeCCChhhHHHhhcc-cccEEEeecCCCce
Q 015701 111 MEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH-RFNLAWIGAFPGVK 189 (402)
Q Consensus 111 l~~~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~n~dd~~~~~~~~~~-~~~~~~~~~~~~~~ 189 (402)
++.+...++|+++|||||++||+++|+|+|+|+++|.++++.+++++.+|+|.|||....+.... ..++.+|+......
T Consensus 673 ~~~~~~~~~pdiaViTNI~~dHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vln~Dd~~~~~~~~~~~~~~~~~fg~~~~~~ 752 (958)
T PRK11929 673 IAYLAAIAAPTVALVTNAQREHQEFMHSVEAVARAKGEIIAALPEDGVAVVNGDDPYTAIWAKLAGARRVLRFGLQPGAD 752 (958)
T ss_pred HHHHhCccCCCEEEEcCCcHHHhhhcCCHHHHHHHHHHHHccCCCCCEEEEECCcHHHHHHHHhhcCCcEEEEeCCCCcc
Confidence 55443346999999999999999999999999999999999888889999999999887765433 23567787532211
Q ss_pred ecc----------ccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCce
Q 015701 190 IDT----------EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259 (402)
Q Consensus 190 ~~~----------~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~ 259 (402)
+.. ......+.+...+... .+.+|++|.||++|+++|+ +++..+|++++.++++|++|+++||||
T Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~L~~f~~~~gR~ 827 (958)
T PRK11929 753 VYAEKIAKDISVGEAGGTRCQVVTPAGSA---EVYLPLIGEHNLRNALAAI--ACALAAGASLKQIRAGLERFQPVAGRM 827 (958)
T ss_pred eEeeecccceeecCCCceEEEEEECCceE---EEEeCCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHhhCCCCCCCc
Confidence 110 0011112221111111 2468999999999999999 899999999999999999999999999
Q ss_pred eEEEeecCCeEEEEcCCCCCHHHHHHHHcccCC---CcEEEEEcCCCCcCCCCCCcchHhhhhccc--cccEEEEeCCCh
Q 015701 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG---HKCVILLGGQAKVLNGQESNGFEKLIEPLN--HHRCVITFGYSG 334 (402)
Q Consensus 260 e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~---~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~--~~d~vi~~g~~~ 334 (402)
|++.. .++..+|||+|||||+|++++++.+.. +|+++|+|+|.+.|+++.+ .|.++++.+. .++.++++|+..
T Consensus 828 e~~~~-~~~~~iidDsya~np~s~~aaL~~l~~~~~~~~i~VlG~~~e~g~~~~~-~h~~~g~~~~~~~~~~vi~~Ge~~ 905 (958)
T PRK11929 828 QRRRL-SCGTRIIDDTYNANPDSMRAAIDVLAELPNGPRALVLGDMLELGDNGPA-MHREVGKYARQLGIDALITLGEAA 905 (958)
T ss_pred eEEEc-CCCcEEEEcCCCCCHHHHHHHHHHHHhccCCCEEEEECCchhcCcHHHH-HHHHHHHHHHHcCCCEEEEECcCH
Confidence 99963 578899999999999999999998852 5789999999988877643 4566766643 378999999999
Q ss_pred HHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCcccccccChhHHhHHHHHHHhc
Q 015701 335 VLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 401 (402)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~~s~~~~~~~~~r~~~~~~~~~~ 401 (402)
+.+.+.+.... ...++|+++|++++.+.+++||+||++ | +|++.||+++..
T Consensus 906 ~~i~~~~~~~~----~~~~~~~~~a~~~~~~~~~~gD~VLlk-G-----------Sr~~~le~~~~~ 956 (958)
T PRK11929 906 RDAAAAFGAGA----RGVCASVDEIIAALRGALPEGDSVLIK-G-----------SRFMRLERVVDA 956 (958)
T ss_pred HHHHHhhhccc----ceeeCCHHHHHHHHHHhcCCCCEEEEE-e-----------CccCcHHHHHHh
Confidence 88888775422 123789999999999999999999997 6 599999999863
No 29
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=9.4e-49 Score=416.25 Aligned_cols=357 Identities=13% Similarity=0.156 Sum_probs=260.8
Q ss_pred ceeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCc--eeeeccCc
Q 015701 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLG 79 (402)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~--~~~~g~~g 79 (402)
.+++|+||+++++||++++|++.|+|+++++++++++. +..++|+||||||||||++||+++|+..|.. +.++|++|
T Consensus 64 ~d~vV~SpgI~~~~p~~~~a~~~gi~v~~~~el~~~~~-~~~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~~gG~~g 142 (809)
T PRK14573 64 DAVVVYSSSISKDNVEYLSAKSRGNRLVHRAELLAELM-QEQISILVSGSHGKTTVSSLITAIFQEAKKDPSYAIGGLNQ 142 (809)
T ss_pred CCEEEECCCcCCCCHHHHHHHHCCCcEEeHHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEECCccc
Confidence 36899999999999999999999999999999999887 4558999999999999999999999999975 46788887
Q ss_pred hhhhhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEEEEecCCcchhcCC-CCHHHHHHHHHHhccccCCCeE
Q 015701 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKL 158 (402)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~~~-~t~e~i~~~k~~i~~~~~~~~~ 158 (402)
.++... ..+.+++|+|+|+++ .... .++|+++|||||++||+|+| +|+|+|+++|..+++.+++.+.
T Consensus 143 ~~~~~~----------~~~~d~~V~E~ss~~-~~~~-~~~P~iaViTNI~~DHLd~~~gs~e~y~~ak~~~~~~~~~~~~ 210 (809)
T PRK14573 143 EGLNGY----------SGSSEYFVAEADESD-GSLK-HYTPEFSVITNIDNEHLSNFEGDRELLLASIQDFARKVQQINK 210 (809)
T ss_pred cccccc----------cCCCCEEEEECCCCc-chhh-eeecCEEEEeCCChhhhhhhcCCHHHHHHHHHHHHhcCCCCCE
Confidence 765532 123688999999875 3222 48999999999999999998 8999999999999987778899
Q ss_pred EEEeCCChhhHHHhhcccccEEEeecCC--Cce---eccccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHH
Q 015701 159 GLLPFGNQHLNEAIKGHRFNLAWIGAFP--GVK---IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV 233 (402)
Q Consensus 159 ~v~n~dd~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a 233 (402)
+|+|.||+.+.... . ..+|+... ++. +..+.....+.+...+. .+....++++|.||++|+++|+ +
T Consensus 211 ~V~N~Dd~~~~~~~---~--~~~~g~~~~~~~~~~~~~~~~~~~~f~l~~~~~--~~~~~~l~l~G~hn~~Na~aAi--a 281 (809)
T PRK14573 211 CFYNGDCPRLKGCL---Q--GHSYGFSSSCDLHILSYYQEGWRSYFSAKFLGV--VYQDIELNLVGMHNVANAAAAM--G 281 (809)
T ss_pred EEEeCCCHHHHhhc---c--cEEEccCCCCcEEEEEEEecCCeEEEEEEECCc--eEEEEEeccccHhhHHHHHHHH--H
Confidence 99999999765432 1 23444321 111 11111111232222121 1123468999999999999999 8
Q ss_pred HHHHcCCCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccC----CCcEEEEEcCCCCcCCCC
Q 015701 234 LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQ 309 (402)
Q Consensus 234 ~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~~~~~~~~ 309 (402)
++..+|++.+.|.++|++|++++||||++.. .+++.+||| |||||++++++++.+. .+|+++||++.....
T Consensus 282 ~~~~lgi~~~~i~~~L~~f~~~~~R~e~~~~-~~~~~~i~D-~ahnP~~~~a~l~~l~~~~~~~rli~vf~~~~~~~--- 356 (809)
T PRK14573 282 IALTLGIDEGAIRNALKGFSGVQRRLERKNS-SETFLFLED-YAHHPSEISCTLRAVRDAVGLRRIIAICQPHRFSR--- 356 (809)
T ss_pred HHHHcCCCHHHHHHHHHhCCCCCCCCEEEec-cCCcEEEEE-CCCCHHHHHHHHHHHHhhcCCCEEEEEEcCCcchh---
Confidence 8999999999999999999999999999963 567889999 6999999999998873 467899997654433
Q ss_pred CCcchHhhhhccccccEEEEeCC-----------ChHHHHHHHHhCCC-CccccccccHHHHHHHHHHhcCCCCEEEEcC
Q 015701 310 ESNGFEKLIEPLNHHRCVITFGY-----------SGVLIWKTLVNNGL-SIPCFAVANMKDAVNHARRMATNGDAIVLSP 377 (402)
Q Consensus 310 ~~~~~~~~~~~l~~~d~vi~~g~-----------~~~~~~~~l~~~~~-~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~ 377 (402)
.+..+.++...+..+|.++++.. +.+.+.+.++..+. ...+...++..+++. +.++++|++|+.
T Consensus 357 ~~~~~~~~~~~l~~~d~vilt~~~~~~e~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~al~---~~~~~~d~~~il- 432 (809)
T PRK14573 357 LRECLDSFPSAFQDADEVILTDVYSAGEEPEDSISYQKLAEAISQSSIVKCTYVPFHEIQRYLE---QSIRVHDVCVSL- 432 (809)
T ss_pred HHHHHHHHHHHHHHCCEEEECCccCCCCCCCCCCCHHHHHHHHhhcCCCceeecCHHHHHHHHH---HhcCCCCEEEEE-
Confidence 22245555555555788777522 13456666643210 001122334444443 344566876554
Q ss_pred CCcccccccChh
Q 015701 378 GCASFDEFRNFE 389 (402)
Q Consensus 378 G~~s~~~~~~~~ 389 (402)
|+||++.+.+..
T Consensus 433 ~~GSly~i~~~~ 444 (809)
T PRK14573 433 GAGNIYTLGEAL 444 (809)
T ss_pred CCCCHHHHHHHH
Confidence 778888776654
No 30
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=100.00 E-value=9.7e-49 Score=392.17 Aligned_cols=323 Identities=24% Similarity=0.304 Sum_probs=238.6
Q ss_pred CCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeeccCchhhhhhhhhh-ccCCC-----------CCCCccEEEEEeCc
Q 015701 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-IALPS-----------SKPKFQVAVVEVSS 108 (402)
Q Consensus 41 ~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~g~~~~~~~~~~-~~~~~-----------~~~~~~~~V~E~~~ 108 (402)
++.++|+||||||||||++||+++|+..|.++++.|+++.++....+.. ..++. ...+++++|+|+|+
T Consensus 93 ~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~gn~~~~i~~~~~~~~~~t~~~~~~~~~l~~~~~~~~~~~VlE~~s 172 (460)
T PRK00139 93 DKLKLIGVTGTNGKTTTAYLLAQILRLLGEKTALIGTLGNGIGGELIPSGLTTPDALDLQRLLAELVDAGVTYAAMEVSS 172 (460)
T ss_pred hccEEEEEECCCCchhHHHHHHHHHHHcCCCEEEECCcccccCCeecccCCCCcCHHHHHHHHHHHHHCCCCEEEEEcch
Confidence 3678999999999999999999999999999998888877655421100 00000 14567899999997
Q ss_pred cccc--CCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEEeCCChhhHHHhhcccccEEEeecC-
Q 015701 109 YQME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF- 185 (402)
Q Consensus 109 ~~l~--~~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~- 185 (402)
++++ .+.. ++|+++|||||+.||+++|+|+|+|+++|.++++.. .+.+|+|.||+.+..+... +.+|+..
T Consensus 173 ~~~~~~~l~~-~~p~iaViTnI~~dHl~~~gt~e~i~~~K~~i~~~~--~~~~v~n~dd~~~~~~~~~----~~~~~~~~ 245 (460)
T PRK00139 173 HALDQGRVDG-LKFDVAVFTNLSRDHLDYHGTMEDYLAAKARLFSEL--GLAAVINADDEVGRRLLAL----PDAYAVSM 245 (460)
T ss_pred hhHhhchhcC-CcCCEEEEcCCCcccCCcCCCHHHHHHHHHHHHhcC--CCeEEEEcCcHhHHHHHhh----cEEEEecC
Confidence 6654 2333 799999999999999999999999999999999864 2489999999987766542 3445532
Q ss_pred CCceeccccccceEEEecCCeeeEEe-eeccCcCChhhHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEEe
Q 015701 186 PGVKIDTEAKTASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264 (402)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~ 264 (402)
...++. ...+.....+..+.+. .+.++++|.||++|+++|+ +++..+|++++.|+++|++|++++||||++..
T Consensus 246 ~~~~~~----~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi~~~~i~~~L~~~~~~~gR~e~~~~ 319 (460)
T PRK00139 246 AGADLR----ATDVEYTDSGQTFTLVTEVESPLIGRFNVSNLLAAL--AALLALGVPLEDALAALAKLQGVPGRMERVDA 319 (460)
T ss_pred CCCcEE----EEEEEEecCceEEEEEEEEEecccchhHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCCCcEEEEc
Confidence 111111 0112222223333332 4578999999999999999 89999999999999999999999999999952
Q ss_pred ecCCeEEEEcCCCCCHHHHHHHHcccC---CCcEEEEEcCCCCcCCCCCCcchHhhhhccc--cccEEEEeCCCh-----
Q 015701 265 DIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLN--HHRCVITFGYSG----- 334 (402)
Q Consensus 265 ~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~--~~d~vi~~g~~~----- 334 (402)
.++..+||| |||||+|++++++.+. .+|+++|+|+..++.. .++++...+. ..|.+++++..+
T Consensus 320 -~~~~~iI~D-yahNP~s~~aal~~l~~~~~~r~i~VlG~g~~k~~-----~~~~~~~~~~~~~~d~vi~~~~~~~~~~~ 392 (460)
T PRK00139 320 -GQGPLVIVD-YAHTPDALEKVLEALRPHAKGRLICVFGCGGDRDK-----GKRPLMGAIAERLADVVIVTSDNPRSEDP 392 (460)
T ss_pred -CCCCEEEEE-CCCCHHHHHHHHHHHHhhcCCcEEEEECCCCCCch-----hhhHHHHHHHHHcCCEEEEECCCCCCCCH
Confidence 467889999 7999999999999885 3689999998655532 2333333322 257777775432
Q ss_pred HHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEc-CCCcccccccC
Q 015701 335 VLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLS-PGCASFDEFRN 387 (402)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~-~G~~s~~~~~~ 387 (402)
..+.+.++. +. ..+++|+++|++.+.+.+++||+||++ .|...++.+++
T Consensus 393 ~~i~~~~~~-~~---~~~~~d~~~Ai~~~~~~~~~gDvVLv~G~G~e~~~~~~~ 442 (460)
T PRK00139 393 AAIIADILA-GI---YDVIEDRAEAIRYAIAQAKPGDVVLIAGKGHEDYQIIGG 442 (460)
T ss_pred HHHHHHHHh-CC---CcccCCHHHHHHHHHHhcCCCCEEEEEEccCcccEEECC
Confidence 346666643 21 235789999999999999999999986 66677776655
No 31
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.
Probab=100.00 E-value=2.5e-48 Score=390.26 Aligned_cols=332 Identities=23% Similarity=0.319 Sum_probs=238.9
Q ss_pred CCcEEEEecCCChhhHHHHHHHHHHhcCCceeeeccCchhhhhhhh---h-hccCC-----------CCCCCccEEEEEe
Q 015701 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF---H-CIALP-----------SSKPKFQVAVVEV 106 (402)
Q Consensus 42 ~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~g~~~~~~~~---~-~~~~~-----------~~~~~~~~~V~E~ 106 (402)
+.++|+||||||||||++||+++|+..|.++++.++.|.+...... . ..+++ ..+.+.+++|+|+
T Consensus 84 ~~~vI~ITGTnGKTTT~~ml~~iL~~~g~~~~~~~t~g~~~~~n~~ig~p~~~tt~~~~~~~~~l~~~~~~~~~~~VlE~ 163 (464)
T TIGR01085 84 KLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGYRLGGNDLIKNPAALTTPEALTLQSTLAEMVEAGAQYAVMEV 163 (464)
T ss_pred ccEEEEEECCCCcHhHHHHHHHHHHHcCCCEEEECccceeECCeeeecCcccCCCCCHHHHHHHHHHHHHCCCCEEEEEe
Confidence 6789999999999999999999999999987666665544221100 0 00000 0134678999999
Q ss_pred Cccccc--CCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEEeCCChhhHHHhhcccccEEEeec
Q 015701 107 SSYQME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA 184 (402)
Q Consensus 107 ~~~~l~--~~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~ 184 (402)
|++.++ .+.. ++|+++|||||+.||+++|+|+|+|+++|.++++.++++|.+|+|.|||.+..+.......+.+...
T Consensus 164 g~~~~~~~~l~~-~~p~iaviTnI~~dHl~~~gs~e~i~~~K~~i~~~~~~~g~~v~n~dd~~~~~~~~~~~~~~~~~~~ 242 (464)
T TIGR01085 164 SSHALAQGRVRG-VRFDAAVFTNLSRDHLDFHGTMENYFAAKASLFTELGLKRFAVINLDDEYGAQFVKRLPKDITVSAI 242 (464)
T ss_pred cHHHHhhCCccC-ceeCEEEEccCCCCCCcccCCHHHHHHHHHHHhccccCCCeEEEEcCCHHHHHHHHhcCCCeEEEEe
Confidence 976554 3333 7999999999999999999999999999999999887888999999999887765443332222211
Q ss_pred CC-------Cceecc---ccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHcC-CCHHHHHHHhhcCC
Q 015701 185 FP-------GVKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG-VDVEALNSTIEILR 253 (402)
Q Consensus 185 ~~-------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~lg-i~~~~i~~~L~~~~ 253 (402)
.. ++.... ......|.+...+... .+.+|++|.||++|+++|+ +++..+| ++.+.|.++|++|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hn~~NalaAi--a~a~~lg~i~~e~i~~~L~~~~ 317 (464)
T TIGR01085 243 TQPADGRAQDIKITDSGYSFEGQQFTFETPAGEG---HLHTPLIGRFNVYNLLAAL--ATLLHLGGIDLEDIVAALEKFR 317 (464)
T ss_pred cCCCccccccEEEEEEEEecCceEEEEEeCCceE---EEEecCccHhHHHHHHHHH--HHHHHcCCCCHHHHHHHHHhCC
Confidence 11 111100 0011122222111111 2468999999999999999 8899999 99999999999999
Q ss_pred CCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccC---CCcEEEEEcCCCCcCCCCCCcchHhhhhccc--cccEEE
Q 015701 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLN--HHRCVI 328 (402)
Q Consensus 254 ~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~--~~d~vi 328 (402)
+++||||++.. .++..+||| |||||+||+++++.+. ++|+++|+|...++. ..|++++..+. ..|.++
T Consensus 318 ~~~gR~e~~~~-~~g~~vi~D-y~~NP~s~~aal~~l~~~~~~r~i~VlGlg~~~~-----~~~~~~~~~~~~~~~d~vi 390 (464)
T TIGR01085 318 GVPGRMELVDG-GQKFLVIVD-YAHTPDALEKALRTLRKHKDGRLIVVFGCGGDRD-----RGKRPLMGAIAEQLADLVI 390 (464)
T ss_pred CCCCCcEEEEc-CCCCEEEEE-CCCCHHHHHHHHHHHHhhCCCcEEEEECCCCCCC-----cchhHHHHHHHHhcCCEEE
Confidence 99999999852 457899999 7999999999999884 467899999443332 13556665553 268888
Q ss_pred EeCCCh-----HHHHHHHHhCCCC--ccccccccHHHHHHHHHHhcCCCCEEEEc-CCCcccccccC
Q 015701 329 TFGYSG-----VLIWKTLVNNGLS--IPCFAVANMKDAVNHARRMATNGDAIVLS-PGCASFDEFRN 387 (402)
Q Consensus 329 ~~g~~~-----~~~~~~l~~~~~~--~~~~~~~~~~~ai~~~~~~~~~~d~vll~-~G~~s~~~~~~ 387 (402)
++|... ..+.+.+.+ +.. ..+.+++|+++|++.+.+.+++||+||++ +|+.+++.+++
T Consensus 391 ~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~d~VLv~G~g~~~~~~~~~ 456 (464)
T TIGR01085 391 LTSDNPRGEDPEQIIADILA-GISEKEKVVIIADRRQAIRYAISNAKAGDVVLIAGKGHEDYQIIGG 456 (464)
T ss_pred EeCCCcCCCCHHHHHHHHHh-cccCCCcEEEECCHHHHHHHHHHhcCCCCEEEEEEcCCcccEEECC
Confidence 887653 334333432 111 12455789999999999999999999997 88888887765
No 32
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=100.00 E-value=4.2e-49 Score=419.90 Aligned_cols=326 Identities=16% Similarity=0.182 Sum_probs=252.3
Q ss_pred CCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeec----cCchhhhhhhhhhccCCCCCCCccEEEEEeCcc-ccc--C
Q 015701 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG----NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY-QME--I 113 (402)
Q Consensus 41 ~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g----~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~-~l~--~ 113 (402)
.+.++|+||||||||||++||+++|+..|..+.+.+ ++|.|.+...+ ..+.+++|+|+|++ ..+ .
T Consensus 105 ~~~~vIgVTGT~GKTTT~~ll~~iL~~~~~~~~~~~~~n~~ig~p~~~~~~--------~~~~~~~V~E~s~s~~~~~~~ 176 (822)
T PRK11930 105 FDIPVIGITGSNGKTIVKEWLYQLLSPDYNIVRSPRSYNSQIGVPLSVWQL--------NEEHELGIFEAGISQPGEMEA 176 (822)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHhccCcEecCCcccCcchhHHHHHhcC--------CCCCcEEEEEeCCCCCChHHH
Confidence 577899999999999999999999999887665443 46777664321 45678999999943 333 2
Q ss_pred CCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEEeCCChhhHHHhhcc--cccEEEeecCC---Cc
Q 015701 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH--RFNLAWIGAFP---GV 188 (402)
Q Consensus 114 ~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~n~dd~~~~~~~~~~--~~~~~~~~~~~---~~ 188 (402)
....++|+++|||||+.||+++|+|+|+|+++|.++++. .+.+|+|.||+....+.... ..++++|+... ++
T Consensus 177 l~~~~~PdiaViTNI~~dHLd~~gt~e~y~~aK~~i~~~---~~~~vin~Dd~~~~~~~~~~~~~~~~~~~g~~~~~~d~ 253 (822)
T PRK11930 177 LQKIIKPTIGILTNIGGAHQENFRSIKQKIMEKLKLFKD---CDVIIYNGDNELISSCITKSNLTLKLISWSRKDPEAPL 253 (822)
T ss_pred HhhhhCCCEEEEcCccHHHHhhcCCHHHHHHHHHHHhcC---CCEEEEeCCCHHHHHHHHhhhcCCcEEEEcCCCCCCcE
Confidence 222479999999999999999999999999999999984 47899999999887655322 23567777531 12
Q ss_pred eec---cccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEEee
Q 015701 189 KID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRD 265 (402)
Q Consensus 189 ~~~---~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~ 265 (402)
... .......+.+...+... .+.+|++|.||++|+++|+ +++..+|++.+.+.++|++|+++|||||++..
T Consensus 254 ~~~~i~~~~~~~~~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~L~~f~~~~gR~e~~~~- 327 (822)
T PRK11930 254 YIPFVEKKEDHTVISYTYKGEDF---HFEIPFIDDASIENLIHCI--AVLLYLGYSADQIQERMARLEPVAMRLEVKEG- 327 (822)
T ss_pred EEEEEEEcCCceEEEEEeCCceE---EEEecCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCCeeEEEEc-
Confidence 111 11111223322222111 3478999999999999999 88999999999999999999999999999963
Q ss_pred cCCeEEEEcCCCCCHHHHHHHHcccC----CCcEEEEEcCCCCcCCCCCCcchHhhhhccc--cccEEEEeCCChHHHHH
Q 015701 266 IQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFEKLIEPLN--HHRCVITFGYSGVLIWK 339 (402)
Q Consensus 266 ~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~--~~d~vi~~g~~~~~~~~ 339 (402)
.+++.+|||+|||||+|++++++.+. .+++++|+|+|.+.|..+ ...|+++++.++ .++.++++|+....+.+
T Consensus 328 ~~g~~vIdDSyn~nP~s~~aaL~~l~~~~~~~~~ilIlG~m~elG~~~-~~~~~~l~~~l~~~~i~~vi~~G~~~~~~~~ 406 (822)
T PRK11930 328 INNCTLINDSYNSDLQSLDIALDFLNRRSQSKKKTLILSDILQSGQSP-EELYRKVAQLISKRGIDRLIGIGEEISSEAS 406 (822)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEECChHhcCchH-HHHHHHHHHHHHHcCCCEEEEECHHHHHHHH
Confidence 57899999999999999999999884 257899999998887655 346788888775 37899999988766655
Q ss_pred HHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCcccccccChhHHhHHHHHHHh
Q 015701 340 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAF 400 (402)
Q Consensus 340 ~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~~s~~~~~~~~~r~~~~~~~~~ 400 (402)
.+.. ..+.++++.+++++.+.+.+++||+||++ | +|++.||+++.
T Consensus 407 ~~~~----~~~~~~~~~e~a~~~l~~~~~~gDvVLlK-G-----------Sr~~~le~i~~ 451 (822)
T PRK11930 407 KFEG----TEKEFFKTTEAFLKSFAFLKFRNELILVK-G-----------ARKFEFEQITE 451 (822)
T ss_pred hcCc----cccEEECCHHHHHHHHHHhcCCCCEEEEE-c-----------CCCCCHHHHHH
Confidence 4321 13556799999999999999999999997 7 48888888774
No 33
>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional
Probab=100.00 E-value=1.7e-47 Score=385.28 Aligned_cols=320 Identities=23% Similarity=0.289 Sum_probs=228.8
Q ss_pred CCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeeccCc-------------hhhhhhhhhhccCCCCCCCccEEEEEeC
Q 015701 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG-------------NPLSEAAFHCIALPSSKPKFQVAVVEVS 107 (402)
Q Consensus 41 ~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~g-------------~~~~~~~~~~~~~~~~~~~~~~~V~E~~ 107 (402)
.++++|+||||||||||++||+++|+..|.++.+.|+.| .|.....+..... ....+.+++|+|+|
T Consensus 108 ~~~~vIgITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~~~ig~~~~~~~~~~p~~~~l~~~~~~-~~e~g~~~~v~Evs 186 (481)
T PRK14022 108 HKLKLLAFTGTKGKTTAAYFAYHILKQLHKPAMLSTMNTTLDGETFFKSALTTPESLDLFKMMAE-AVDNGMTHLIMEVS 186 (481)
T ss_pred hccEEEEEeCCCcHHHHHHHHHHHHHHCCCCEEEEeeeeeccCCeeeeCCCCCchHHHHHHHHHH-HHHCCCCEEEEEec
Confidence 467899999999999999999999999998776665533 3422111100000 01345788999999
Q ss_pred cccccCCCc-cccccEEEEecCCcchhcC--CCCHHHHHHHHHHhccccCCCeEEEEeCC-ChhhHHHhhcccccEEEee
Q 015701 108 SYQMEIPNK-YFCPTVSVVLNLTPDHLER--HKTMKNYALTKCHLFSHMVNTKLGLLPFG-NQHLNEAIKGHRFNLAWIG 183 (402)
Q Consensus 108 ~~~l~~~~~-~~~p~i~iiTni~~dH~~~--~~t~e~i~~~k~~i~~~~~~~~~~v~n~d-d~~~~~~~~~~~~~~~~~~ 183 (402)
++++...+. .++|+++|||||++||+++ |+|+|+|+++|.+|++ +++.+|+|.| |+...........++++|+
T Consensus 187 S~~~~~~r~~~~~pdiaViTNI~~DHld~L~~~t~e~~a~aK~~i~~---~~~~~Vln~d~d~~~~~~~~~~~~~~~~~g 263 (481)
T PRK14022 187 SQAYLVGRVYGLTFDVGVFLNITPDHIGPIEHPTFEDYFYHKRLLME---NSKAVVVNSDMDHFSELLEQVTPQEHDFYG 263 (481)
T ss_pred hhHHHhccccCccccEEEEcCCCcccCCCCCCCCHHHHHHHHHHHhc---CCCEEEEEcCCCHHHHHHHHhcCCCEEEEe
Confidence 875432221 2799999999999999999 8999999999999996 4688999998 5543322222223567777
Q ss_pred cCCCceeccccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEE
Q 015701 184 AFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263 (402)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~ 263 (402)
......+... . .+.+...+.. ...+.++++|.||++|+++|+ +++..+|++.+.|.++|++ .++|||||++.
T Consensus 264 ~~~~~~~~~~-~--~~~~~~~~~~--~~~~~l~l~G~hnv~NalaAi--a~a~~lgi~~~~i~~~L~~-~~~~gR~e~i~ 335 (481)
T PRK14022 264 IDSENQIMAS-N--AFSFEATGKL--AGTYDIQLIGKFNQENAMAAG--LACLRLGASLEDIQKGIAQ-TPVPGRMEVLT 335 (481)
T ss_pred cCCccceEEE-E--EEEEEEcccC--CceEEEEEechhhHHHHHHHH--HHHHHcCCCHHHHHHHhcc-CCCCCCeEEEE
Confidence 5422111110 0 1222211100 011357899999999999999 8899999999999999999 99999999995
Q ss_pred eecCCeEEEEcCCCCCHHHHHHHHcccC---CCcEEEEEcCCCCcCCCCCCcchHhhhhcccc-cc-EEEEeCC-----C
Q 015701 264 RDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HR-CVITFGY-----S 333 (402)
Q Consensus 264 ~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~-~d-~vi~~g~-----~ 333 (402)
. .+++.+|+| |||||+|++++++.+. .+|+++|+|+|.+++... +.++++.+.. .+ .++++++ +
T Consensus 336 ~-~~g~~vi~D-yahNP~s~~aal~~l~~~~~~r~i~V~G~~~e~g~~~----~~~~~~~~~~~~~~~vi~~~~~~r~e~ 409 (481)
T PRK14022 336 Q-SNGAKVFID-YAHNGDSLNKLIDVVEEHQKGKLILLLGAAGNKGESR----RPDFGRVANRHPYLQVILTADDPNNED 409 (481)
T ss_pred C-CCCCEEEEE-CCCCHHHHHHHHHHHhhhCCCCEEEEECCCCCCCcch----hHHHHHHHHhcCCceEEEccCCCCCCC
Confidence 2 467889999 6999999999998883 468999999999988654 4445554433 23 2666653 3
Q ss_pred hHHHHHHHHhCCCCccccccccHHHHHHHHHHhcC-CCCEEEEcCCCc
Q 015701 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMAT-NGDAIVLSPGCA 380 (402)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~-~~d~vll~~G~~ 380 (402)
++.+.+.++... +..+.+++|+++|++.+.+.++ +||+||++ |.|
T Consensus 410 ~~~i~~~i~~~~-~~~~~~~~d~~~Ai~~a~~~a~~~gD~VLi~-G~G 455 (481)
T PRK14022 410 PKMITQEIASHI-THPVEIIDDRAEAIKHAMSITEGPGDAVIIA-GKG 455 (481)
T ss_pred HHHHHHHHHhcC-CCCeEEECCHHHHHHHHHHhcCCCCCEEEEE-ecC
Confidence 467777776421 1134567899999999999999 99999985 543
No 34
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=3.5e-47 Score=412.35 Aligned_cols=342 Identities=22% Similarity=0.302 Sum_probs=246.5
Q ss_pred CCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeeccCchhhhhhhhhhc-cCC-----------CCCCCccEEEEEeCc
Q 015701 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCI-ALP-----------SSKPKFQVAVVEVSS 108 (402)
Q Consensus 41 ~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~g~~~~~~~~~~~-~~~-----------~~~~~~~~~V~E~~~ 108 (402)
+++++|+||||||||||++||+++|+..|.++++.|++|.++....+... +++ ....+++++|+|+|+
T Consensus 110 ~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~~~i~~~~i~~~~t~~~~~~~~~~l~~~~~~~~~~~VlE~ss 189 (958)
T PRK11929 110 EQLSLVAVTGTNGKTSCAQLLAQLLTRLGKPCGSIGTLGARLDGRLIPGSLTTPDAIILHRILARMRAAGADAVAMEASS 189 (958)
T ss_pred hccEEEEEECCCccHHHHHHHHHHHHHcCCCEEEECCccccCCCeeeecCCCCCCHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 46789999999999999999999999999999988888776543222111 110 014567899999997
Q ss_pred ccccCCCc-cccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEEeCCChhhHHHhhccc--ccEEEeecC
Q 015701 109 YQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR--FNLAWIGAF 185 (402)
Q Consensus 109 ~~l~~~~~-~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~--~~~~~~~~~ 185 (402)
++++..+. .++|+++|||||++||+++|+|+|+|+++|++|++.+++++.+|+|.|||....+..... ..+.+++..
T Consensus 190 ~~l~~~rl~~~~p~iaviTnI~~dHl~~~gt~e~i~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~ 269 (958)
T PRK11929 190 HGLEQGRLDGLRIAVAGFTNLTRDHLDYHGTMQDYEEAKAALFSKLPGLGAAVINADDPAAARLLAALPRGLKVGYSPQN 269 (958)
T ss_pred chHhhCcccccccCEEEEeCCCccccccCCCHHHHHHHHHHHhcCCccCCeEEEECCCHHHHHHHHHcCCCceEEEEeeC
Confidence 76643222 268999999999999999999999999999999998888899999999998877765332 234455432
Q ss_pred C--Cceec---cccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCcee
Q 015701 186 P--GVKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260 (402)
Q Consensus 186 ~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e 260 (402)
. ++... .......|.+...+.... +.+|++|.||++|+++|+ +++..+|++++.|.++|++|+++|||||
T Consensus 270 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~l~G~hnv~NalaAi--a~a~~lgi~~~~I~~~L~~~~~~~gR~e 344 (958)
T PRK11929 270 AGADVQARDLRATAHGQVFTLATPDGSYQ---LVTRLLGRFNVSNLLLVA--AALKKLGLPLAQIARALAAVSPVPGRME 344 (958)
T ss_pred CCccEEEEEEEEcCCceEEEEEeCCceEE---EEecCccHhhHHHHHHHH--HHHHHcCCCHHHHHHHHhcCCCCCCCcE
Confidence 1 22111 111122233322221222 368999999999999999 8999999999999999999999999999
Q ss_pred EEE--eecCCeEEEEcCCCCCHHHHHHHHcccC------CCcEEEEEcCCCCcCCCCCCcchHhhhhccc--cccEEEEe
Q 015701 261 IVH--RDIQGVTWVDDSKATNLEATCTGLMDLK------GHKCVILLGGQAKVLNGQESNGFEKLIEPLN--HHRCVITF 330 (402)
Q Consensus 261 ~~~--~~~~~~~iidD~~a~np~s~~~al~~~~------~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~--~~d~vi~~ 330 (402)
++. ...++..+|+| |||||+|++++++.+. ++|+++|+|+..+++. .++++...+. .+|.++++
T Consensus 345 ~i~~~~~~~~~~vi~D-yahnP~s~~a~l~~l~~~~~~~~~r~i~V~g~g~~r~~-----~~~~~~~~~~~~~~d~vi~t 418 (958)
T PRK11929 345 RVGPTAGAQGPLVVVD-YAHTPDALAKALTALRPVAQARNGRLVCVFGCGGDRDK-----GKRPEMGRIAAELADRVVVT 418 (958)
T ss_pred EeccccCCCCCEEEEE-CCCCHHHHHHHHHHHHHhcccCCCcEEEEECCCCCCCc-----chhHHHHHHHHHhCCEEEEc
Confidence 983 11357778888 6999999999999884 3678999998766543 2333433332 26777766
Q ss_pred CC-----ChHHHHHHHHhCCCC--ccccccccHHHHHHHHHHhcCCCCEEEEcCCCcccccccChhHHhHHHH
Q 015701 331 GY-----SGVLIWKTLVNNGLS--IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396 (402)
Q Consensus 331 g~-----~~~~~~~~l~~~~~~--~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~~s~~~~~~~~~r~~~~~ 396 (402)
.. +++.+.+.++. +.. ..+..++|+++|++.+.+.+++||+||++ |+ ..+.|..|..|+..|.
T Consensus 419 ~~~pr~e~p~~i~~~i~~-~~~~~~~~~~~~d~~~Ai~~a~~~a~~gD~VLv~-Gs-G~e~~~~~~~~~~~f~ 488 (958)
T PRK11929 419 SDNPRSEAPEAIIDQILA-GIPAGARVFVISDRAEAIRQAIWMAAPGDVILIA-GK-GHETYQEIGGRKLFFD 488 (958)
T ss_pred CCCCCCCCHHHHHHHHHh-hccCCCceEEECCHHHHHHHHHHhcCCCCEEEEe-ec-CcchheEECCEecCCC
Confidence 33 34567776653 221 13566789999999999999999999986 43 3344444444554443
No 35
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=100.00 E-value=3.6e-45 Score=360.33 Aligned_cols=318 Identities=21% Similarity=0.239 Sum_probs=225.8
Q ss_pred CCCcEEEEecCCChhhHHHHHHHHHHhcCCcee--eeccC----------chhhhhhhhhh--------c-c---CC---
Q 015701 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF--VGGNL----------GNPLSEAAFHC--------I-A---LP--- 93 (402)
Q Consensus 41 ~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~--~~g~~----------g~~~~~~~~~~--------~-~---~~--- 93 (402)
+++++|+||||||||||++||+++|+..|++++ +++++ |.+++...+.. . . ++
T Consensus 16 ~~~~vI~VtGTNGKgSt~~~l~~iL~~~g~~vg~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~f 95 (397)
T TIGR01499 16 DLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRINGEPISDEELAQAFEQVRPILEKLSQQPTYF 95 (397)
T ss_pred hhCCEEEEeCCCChHHHHHHHHHHHHHcCCCeeEEeCCCcCccceEEEECCEECCHHHHHHHHHHHHHHHHhccCCCCHH
Confidence 467899999999999999999999999999984 44443 45544422100 0 0 11
Q ss_pred ----------CCCCCccEEEEEeC-cccccCCCccccccEEEEecCCcchhcCCC-CHHHHHHHHHHhccccCCCeEEEE
Q 015701 94 ----------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLL 161 (402)
Q Consensus 94 ----------~~~~~~~~~V~E~~-~~~l~~~~~~~~p~i~iiTni~~dH~~~~~-t~e~i~~~k~~i~~~~~~~~~~v~ 161 (402)
....++|++|+|+| +|++|.++. ++|+++|||||+.||+++|+ |+|+|+++|+++++ +++.+|+
T Consensus 96 e~~t~~A~~~f~~~~~d~~VlEvGlggrld~tn~-i~p~vaViTnI~~DHl~~lG~t~e~ia~~Ka~I~k---~~~~~v~ 171 (397)
T TIGR01499 96 ELLTLLAFLYFAQAQVDVAVLEVGLGGRLDATNV-IEPLVSVITSIGLDHTEILGDTLEEIAWEKAGIIK---EGVPIVT 171 (397)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeecCCCCcccccc-cCCCeEEEccccHHHHHHhCccHHHHHHHHhCccC---CCCCEEE
Confidence 12467899999999 678898886 78999999999999999998 99999999999998 4567999
Q ss_pred eCCChhhHHHhh----cccccEEEeecCCCceeccccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHH
Q 015701 162 PFGNQHLNEAIK----GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD 237 (402)
Q Consensus 162 n~dd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~ 237 (402)
|.|||....+.. ....++++++.+ +.+... ....+.+..... ....+.++++|.||++|+++|+ +++..
T Consensus 172 ~~d~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~--~~~~~~~~l~G~~~~~N~~~Ai--aa~~~ 244 (397)
T TIGR01499 172 GPQEPEALNVLKKKAQEKGAPLFVVGRD--FNYSET-DENYLSFSGANL--FLEPLALSLLGDHQAENAALAL--AALEV 244 (397)
T ss_pred cCCChHHHHHHHHHHHHcCCCEEEeccc--eeeccc-ccceEEeecccc--cccccCCCCCCHHHHHHHHHHH--HHHHH
Confidence 999987765532 223455555532 211110 011233321110 1112368999999999999999 78888
Q ss_pred cCC-----CHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccC----CCcEEEEEcCCCCcCCC
Q 015701 238 IGV-----DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNG 308 (402)
Q Consensus 238 lgi-----~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~~~~~~~ 308 (402)
+|. +.+.|.++|+++. +|||||++. .++..+|.| ++|||+|++++++.+. ++|+++|+|+..++.
T Consensus 245 lg~~~~~i~~~~i~~~L~~~~-~pGR~e~i~--~~~~~viiD-~AHNp~a~~~~l~~l~~~~~~~~i~~V~G~~~dkd-- 318 (397)
T TIGR01499 245 LGKQRPKLSEEAIRKGLANTI-WPGRLEILS--EDNPNILLD-GAHNPHSAEALAEWFKKRFNGRPIILLFGALADKD-- 318 (397)
T ss_pred HHhccCCCCHHHHHHHHHhCC-CCceEEEEe--cCCCEEEEE-CCCCHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCC--
Confidence 875 5899999999997 999999995 334555555 4999999999999884 357899999987764
Q ss_pred CCCcchHhhhhcccc-c--cEEEEe-----CCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCc
Q 015701 309 QESNGFEKLIEPLNH-H--RCVITF-----GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 380 (402)
Q Consensus 309 ~~~~~~~~~~~~l~~-~--d~vi~~-----g~~~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~~ 380 (402)
+.++.+.+.. + |.+++. +.+++.+.+.+...+ +..++|+++|++.+. .++++|+||++ |
T Consensus 319 -----~~~~~~~l~~~~~~d~~~~~~~~~r~~~~~~i~~~~~~~~----~~~~~~~~~ai~~a~-~~~~~d~vlv~-G-- 385 (397)
T TIGR01499 319 -----AAAMLAPLKPVVDKEVFVTPFDYPRADDAADLAALAETFG----KETVEDWREALALAL-NASAEDDILVT-G-- 385 (397)
T ss_pred -----HHHHHHHHhhccCcEEEEECCCCCCCCCHHHHHHHHHHcC----ceecCCHHHHHHHHH-hCCCCCEEEEE-c--
Confidence 4444444332 2 344443 334566777665432 345789999999988 77889999887 5
Q ss_pred ccccccCh
Q 015701 381 SFDEFRNF 388 (402)
Q Consensus 381 s~~~~~~~ 388 (402)
||+.+.+.
T Consensus 386 Slyl~~~~ 393 (397)
T TIGR01499 386 SLYLVGEV 393 (397)
T ss_pred cHHHHHHH
Confidence 55555443
No 36
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.9e-44 Score=355.61 Aligned_cols=336 Identities=23% Similarity=0.325 Sum_probs=254.8
Q ss_pred CCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeeccCchhhhhhhhh--hccCCC-----------CCCCccEEEEEeC
Q 015701 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFH--CIALPS-----------SKPKFQVAVVEVS 107 (402)
Q Consensus 41 ~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~g~~~~~~~~~--~~~~~~-----------~~~~~~~~V~E~~ 107 (402)
+++++|+||||||||||++++.++++..|.++.+.|+.+..++..... ..++|. .+...+++++|++
T Consensus 89 ~~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g~~~~~~~~~~~~~tTP~~~~l~~~~~~~~d~~~e~~vmEvs 168 (475)
T COG0769 89 GKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEGDELSPGILEPTGLTTPEALDLQNLLRDLLDRGAEIAVMEVS 168 (475)
T ss_pred cCceEEEEcCCCcHHHHHHHHHHHHHhcCCceEEEEEEeeeccCCcccccCCCCccHHHHHHHHHHHHHcCCcEEEEEee
Confidence 368999999999999999999999999999987777766544211111 122221 2556889999999
Q ss_pred cccccCCCcc-ccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEEeCCChhhHHH---hhcccccEEEee
Q 015701 108 SYQMEIPNKY-FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEA---IKGHRFNLAWIG 183 (402)
Q Consensus 108 ~~~l~~~~~~-~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~n~dd~~~~~~---~~~~~~~~~~~~ 183 (402)
++.+...+.. ...+++++||++.||+|+|+|+|+|+.+|..+|..+++.+.+|+|.||+....+ ......+.++++
T Consensus 169 sh~l~~~Rv~~~~f~v~~ftnls~DHlD~h~t~e~Y~~aK~~lf~~~~~~~~~Vin~dd~~~~~~~~~~~~~~~~~~~~~ 248 (475)
T COG0769 169 SHGLVQGRVEGVTFDVGVFTNLSRDHLDYHGTMEYYGAAKAVLFESLPHSGEAVINPDDGHGLDYKERLKNALGDYITYG 248 (475)
T ss_pred hhHHHhCCccCceEEEEeccccCchhhcccCcHHHHHHHHHHHHhhcCCCccEEEccCCchHHHHHHHHHhcCCCEEEeC
Confidence 9988766553 467999999999999999999999999999999866788899999999998443 333334677777
Q ss_pred cCCCce------eccccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCC
Q 015701 184 AFPGVK------IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257 (402)
Q Consensus 184 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~g 257 (402)
...... ++....+..+.....+... .+++|++|.||++|+++|+ +++..+|+|++.|.+++++++|++|
T Consensus 249 ~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~---~~~~~L~G~fNv~NaLaA~--a~~~~lG~~~e~i~~~l~~~~~v~G 323 (475)
T COG0769 249 CDFKRPDLDYRGIEESSSGSDFVFEPSGGIG---EYELPLPGLFNVYNALAAV--AAALALGVDLEDILAGLETLKPVPG 323 (475)
T ss_pred CCCchhhhhhccceeeeccceeEEEccCCce---eEeccccchhHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcCCCCC
Confidence 653311 1111111122222222122 3479999999999999999 8999999999999999999999999
Q ss_pred ceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccC---CCcEEEEEcCCCCcCCCCCCcchHhhhhccccccEEEEeC---
Q 015701 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFG--- 331 (402)
Q Consensus 258 R~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~~d~vi~~g--- 331 (402)
|||.+. .++..++.| |+|||++++++++.+. .+|+++|+|+.+|+ +.+.+..+.+++..++ |.++++.
T Consensus 324 RmE~v~--~~~~~v~VD-yAHnPd~le~~L~~~~~~~~g~li~VfG~gGDr-D~~kr~~mg~ia~~~a--d~vivt~dnp 397 (475)
T COG0769 324 RMELVN--IGGKLVIVD-YAHNPDGLEKALRAVRLHAAGRLIVVFGCGGDR-DKSKRPDMGAIAEQLA--DIVIVTSDNP 397 (475)
T ss_pred cceEec--CCCCeEEEE-eccChHHHHHHHHHHHhhcCCcEEEEECccCCC-CcccccchHHHHHhcC--CcEEEcCCCC
Confidence 999996 336666666 6999999999998874 47899999999997 7777778888887764 6666663
Q ss_pred --CChHHHHHHHHhCCCC-ccccccccHHHHHHHHHHhcCCCCEEEEc-CCCcccccccC
Q 015701 332 --YSGVLIWKTLVNNGLS-IPCFAVANMKDAVNHARRMATNGDAIVLS-PGCASFDEFRN 387 (402)
Q Consensus 332 --~~~~~~~~~l~~~~~~-~~~~~~~~~~~ai~~~~~~~~~~d~vll~-~G~~s~~~~~~ 387 (402)
++++.+.+.+...... ..+....|+++|++++...++++|+|++. +|+...+.+.+
T Consensus 398 R~edp~~i~~~i~~g~~~~~~~~~~~dr~~AI~~ai~~a~~~D~vliagkGhe~yq~~~~ 457 (475)
T COG0769 398 RSEDPAVILADILAGIEAPEKYEIIEDREEAIRKALDLAKEGDVVLIAGKGHETYQIMLE 457 (475)
T ss_pred CCcCHHHHHHHHHhccCCccceecchhHHHHHHHHHHhhccCCEEEEeeccchhhhhhhc
Confidence 3455666666443111 12566789999999999999999998876 78888887776
No 37
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=100.00 E-value=3.3e-43 Score=373.21 Aligned_cols=328 Identities=18% Similarity=0.204 Sum_probs=236.4
Q ss_pred CCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeeccCchhhhhhhhhh--------ccCCCCCCCccEEEEEeCcccc-
Q 015701 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC--------IALPSSKPKFQVAVVEVSSYQM- 111 (402)
Q Consensus 41 ~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~g~~~~~~~~~~--------~~~~~~~~~~~~~V~E~~~~~l- 111 (402)
.++|+|+||||||||||++||+++|+..|+++++.++-|..++...+.. ...-..++++|++|+|+|++++
T Consensus 477 ~~ipiI~VTGTNGKTTTt~mia~IL~~~G~~vG~~tS~G~~i~~~~i~~g~~t~p~sa~~~l~~~~vd~aVlE~~~ggil 556 (864)
T TIGR02068 477 GRIPIVSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDGVYIGKYLVEKGDNTGPASARRILMDPTVDAAVLETARGGIL 556 (864)
T ss_pred CceEEEEEeCCCCHhHHHHHHHHHHHHCCCcEEEecCCceEECCEEEecCCCCChHHHHHHhhCCCCCEEEEEccCCchh
Confidence 4678999999999999999999999999998865444333222111000 0000125678999999997664
Q ss_pred cCCCccccccEEEEecCCcchhcCC--CCHHHHHHHHHHhccccCCCeEEEEeCCChhhHHHhhcccccEEEeecCCCce
Q 015701 112 EIPNKYFCPTVSVVLNLTPDHLERH--KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVK 189 (402)
Q Consensus 112 ~~~~~~~~p~i~iiTni~~dH~~~~--~t~e~i~~~k~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~ 189 (402)
+....+.+|+++|||||+.||++++ +|+|+|+++|+.+++.+++++.+|+|.|||.+..++....+++++|+.+.+..
T Consensus 557 ~~gl~~~~pdvaVITNI~~DHL~~~g~~tlE~ia~~K~~i~~~i~~~g~~VlNaDd~~~~~~a~~~~~~vi~f~~~~~~~ 636 (864)
T TIGR02068 557 REGLAFDRCDVGVVTNIAGDHLGIGDINTIEDLADVKRVVVEVVLPDGYAVLNADDPMVAAMAEKCKGKIAYFSMDPNNP 636 (864)
T ss_pred hccCCcccccEEEEecCCHHHcCCCCCCCHHHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHhCCCCEEEEecCCCCh
Confidence 4444446899999999999999864 79999999999999988899999999999998888776667788887543211
Q ss_pred -----eccccccc-----eEEEecCCeee---EEeeeccCcCC--hhhHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCC
Q 015701 190 -----IDTEAKTA-----SFEVPAVGVVS---QLQLHNMKVMG--RHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254 (402)
Q Consensus 190 -----~~~~~~~~-----~~~~~~~~~~~---~~~~~~l~l~G--~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~ 254 (402)
+....... .+....++... ....+.++++| .||++|+++|+ ++++.+|++.+.|.++|++|.+
T Consensus 637 ~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~lpl~~~G~g~~nv~NalaAi--aaa~~lgi~~e~I~~gL~~F~~ 714 (864)
T TIGR02068 637 TVAAHIADGGRAVYYENGYIVIARGGDEVAIARIAAIPLTMGGRVAFQIENALAAV--AAAWALGVPIELIRAGIRTFDA 714 (864)
T ss_pred HHHHHHHcCCcEEEEcCCEEEEEecCccccccceeeeccccCCcccchHHHHHHHH--HHHHHcCCCHHHHHHHHHhccc
Confidence 11010000 01111111111 11123445555 89999999999 8899999999999999999987
Q ss_pred ----CCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHccc---CCCcEEEEEcCCCCcCCCCCCcchHhhhhcccc-ccE
Q 015701 255 ----PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL---KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRC 326 (402)
Q Consensus 255 ----~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~---~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~-~d~ 326 (402)
+|||||++. .++..+|+| |+|||++++++++.+ +.+|+++|+|++.++... .+.++++.+.. +|.
T Consensus 715 ~~~~~pGR~e~~~--~~g~~vI~D-yAHNP~a~~all~~l~~~~~~r~i~Vig~~gdr~~~----~~~~lg~~l~~~~d~ 787 (864)
T TIGR02068 715 DAAQAPGRFNLFN--LGGAHVLVD-YGHNPAAIEAVGAAIRNWPARRRIGVIGGPGDRRDE----DLVEQGELLGGAFDQ 787 (864)
T ss_pred cccCCCCceEEEE--eCCcEEEEE-cCCCHHHHHHHHHHHHhcCCCCEEEEECCCCCCChh----HHHHHHHHHHHhCCE
Confidence 999999984 467788888 599999999777665 346789999999766432 36667766653 788
Q ss_pred EEEeCC----------ChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcC
Q 015701 327 VITFGY----------SGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377 (402)
Q Consensus 327 vi~~g~----------~~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~ 377 (402)
++++.. ..+.+.+.+.+.+....+..+.|+++|++.+.+.+++||+||+.+
T Consensus 788 vil~~~~~~rg~~~ge~~~~i~~~~~~~~~~~~v~~~~d~~eAi~~a~~~a~~gDlVLi~~ 848 (864)
T TIGR02068 788 IILKEDDDVRGRPRGEAAALLRQGLRQSARKAAIEDILDETEAIAAALDDLRAGDLVVIFP 848 (864)
T ss_pred EEEEeCCCcCCCCCchHHHHHHHHHHhcCCCCcEEEEcCHHHHHHHHHHhCCCCCEEEEEe
Confidence 877532 234445555443322245668999999999999999999999974
No 38
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=100.00 E-value=3.3e-42 Score=333.00 Aligned_cols=329 Identities=20% Similarity=0.248 Sum_probs=236.5
Q ss_pred eeHHHHHHhhC---CCCCcEEEEecCCChhhHHHHHHHHHHhcCCce--eeeccC----------chhhhhhhhhh----
Q 015701 29 MSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA--FVGGNL----------GNPLSEAAFHC---- 89 (402)
Q Consensus 29 l~~~~~~~~~~---~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~--~~~g~~----------g~~~~~~~~~~---- 89 (402)
|.|+..+.+.+ ++..++|+|+|||||+|||+|+.+||.++|+++ ++++++ |.+++...+..
T Consensus 27 L~Ri~~ll~~LGnP~~~~~vIhVaGTNGKGSt~afl~siL~~aG~~VG~yTSPHL~~~~ERI~ing~~Isd~~~~~~~~~ 106 (427)
T COG0285 27 LERISRLLERLGNPQKSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSFNERIRINGEPISDEELAAAFER 106 (427)
T ss_pred hHHHHHHHHHcCCccccCCeEEEeCCCCchhHHHHHHHHHHHcCCCceEECCCccCccceEEEECCEECCHHHHHHHHHH
Confidence 78888887765 357789999999999999999999999999997 577774 55555543210
Q ss_pred ---cc-----C-C-------------CCCCCccEEEEEeC-cccccCCCccccccEEEEecCCcchhcCCC-CHHHHHHH
Q 015701 90 ---IA-----L-P-------------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALT 145 (402)
Q Consensus 90 ---~~-----~-~-------------~~~~~~~~~V~E~~-~~~l~~~~~~~~p~i~iiTni~~dH~~~~~-t~e~i~~~ 145 (402)
.. . + +.+.++|++|+|+| +|++|++|+ +.|+++|||+|+.||.+++| |+|+|+.+
T Consensus 107 ve~~~~~~~~~~~T~FE~~Ta~Af~~F~~~~vD~aIlEVGLGGRlDATNV-i~p~vsvIT~I~lDH~~~LG~tie~IA~E 185 (427)
T COG0285 107 VEEAAGSLDLISLTYFEVLTAMAFLYFAEAKVDVAILEVGLGGRLDATNV-IEPDVSVITSIGLDHTAFLGDTLESIARE 185 (427)
T ss_pred HHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEeccccccccchhc-cCCceEEEcccChhHHHHhCCcHHHHHHH
Confidence 00 0 0 23556899999999 889999998 88999999999999999995 99999999
Q ss_pred HHHhccccCCCeEEEEeC-CChhhHHHhh----cccccEEEeecCCCceeccccccceEEEecCCeeeEEeeeccCcCCh
Q 015701 146 KCHLFSHMVNTKLGLLPF-GNQHLNEAIK----GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGR 220 (402)
Q Consensus 146 k~~i~~~~~~~~~~v~n~-dd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~ 220 (402)
|++|++. +..+|+.. +.|.+..... ...+++..++.+ +..... ...+....++ ....+.+|+.|.
T Consensus 186 KAGI~k~---g~P~v~~~~~~p~a~~vi~~~a~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~---~~~~~~lp~l~~ 255 (427)
T COG0285 186 KAGIIKA---GKPAVIGEQQPPEALNVIAERAEELGAPLFVLGPD--FQVLEE--GNGFSFQGGG---GLLDLPLPLLGG 255 (427)
T ss_pred hhhhccC---CCcEEECCCCCHHHHHHHHHHHHhcCCCeeecccc--hhhccc--cceEEEecCC---eeeeeccccccc
Confidence 9999984 44566655 4565555432 233444444322 111111 1223333222 122347998888
Q ss_pred h-hHHHHHHHHHHHHHHHcC--CCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccC----CC
Q 015701 221 H-NYHNAAVAALSVLGLDIG--VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GH 293 (402)
Q Consensus 221 ~-~~~Nal~A~~~a~~~~lg--i~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~ 293 (402)
| |..||++|+ +++..++ ++.+.|.++|++.. ||||||++. .++.+++| .+|||+|+.++.+.++ .+
T Consensus 256 ~~Q~~NAa~Ai--~al~~l~~~i~~~~i~~gl~~~~-wpGR~e~l~--~~p~i~lD--gAHNp~aa~~La~~l~~~~~~~ 328 (427)
T COG0285 256 HHQIENAALAI--AALEALGKEISEEAIRKGLANVD-WPGRLERLS--ENPLILLD--GAHNPHAARALAETLKTLFNDR 328 (427)
T ss_pred hhHHHHHHHHH--HHHHHhcccCCHHHHHHHHHhCc-CCceEEEec--CCCeEEEE--CCCCHHHHHHHHHHHHHHhccC
Confidence 8 999999999 7888887 58999999999999 999999994 56777777 8999999999888773 23
Q ss_pred c-EEEEEcCCCCcCCCCCCcchHhhhhcccc-ccEEEEeC------CChHHHHHHHHhCCCCccccccccHHHHHHHHHH
Q 015701 294 K-CVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFG------YSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR 365 (402)
Q Consensus 294 ~-~i~V~g~~~~~~~~~~~~~~~~~~~~l~~-~d~vi~~g------~~~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~ 365 (402)
+ +++|+|+..+|. ...+.+.+.. .+.++++. .+.+.+.+.....+ . .. .++.++|++.+.+
T Consensus 329 ~~~~~v~g~l~dKd-------~~~~l~~L~~~~~~~~~~~~~~~ra~~~~~l~~~~~~~~-~--~~-~~~~~~a~~~~~~ 397 (427)
T COG0285 329 PRLTLVFGMLKDKD-------IAGMLAALLPIVDEIYTTPLPWPRALDAEELLAFAGERG-G--VE-LDDVAEALELALE 397 (427)
T ss_pred CceEEEEEeecCCC-------HHHHHHHhhccCcEEEEccCCCcccCCHHHHHHHHHhhc-C--Cc-cccHHHHHHHHHH
Confidence 3 899999998875 4445555544 36666653 23355555554332 1 11 6889999999988
Q ss_pred hcCCCCEEEEcCCCcccccccChh
Q 015701 366 MATNGDAIVLSPGCASFDEFRNFE 389 (402)
Q Consensus 366 ~~~~~d~vll~~G~~s~~~~~~~~ 389 (402)
...++|.+|++ | ||+...++.
T Consensus 398 ~~~~~~~ilV~-G--Sly~~~ev~ 418 (427)
T COG0285 398 KADEDDLVLVT-G--SLYLAGEVL 418 (427)
T ss_pred hcCCCCeEEEE-e--cHHHHHHHH
Confidence 87667899887 4 666555443
No 39
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=100.00 E-value=4.9e-42 Score=339.38 Aligned_cols=324 Identities=19% Similarity=0.153 Sum_probs=222.8
Q ss_pred ceeeHHHHHHhhC---CCCCcEEEEecCCChhhHHHHHHHHHHhcCCceee--eccC----------chhhhhhhhh---
Q 015701 27 RVMSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV--GGNL----------GNPLSEAAFH--- 88 (402)
Q Consensus 27 ~~l~~~~~~~~~~---~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~--~g~~----------g~~~~~~~~~--- 88 (402)
+-|.++..+.+.+ +++.++||||||||||||++||+++|+.+|+++++ ++++ |.+++...+.
T Consensus 30 ~~l~~~~~ll~~lg~p~~~~~~I~VtGTNGKgSt~~~l~~iL~~~G~~vG~~tSphl~~~~eri~i~g~~i~~~~~~~~~ 109 (416)
T PRK10846 30 LGLERVSQVAARLDLLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYRVGVYSSPHLVRYTERVRIQGQELPESAHTASF 109 (416)
T ss_pred CChHHHHHHHHHhCCCccCCCEEEEECCCChHHHHHHHHHHHHHcCCCceEECCCCCCCcceEEEECCEECCHHHHHHHH
Confidence 3466666666554 24678999999999999999999999999999853 4432 3344322110
Q ss_pred ----------------------hccCCCCCCCccEEEEEeC-cccccCCCccccccEEEEecCCcchhcCCC-CHHHHHH
Q 015701 89 ----------------------CIALPSSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYAL 144 (402)
Q Consensus 89 ----------------------~~~~~~~~~~~~~~V~E~~-~~~l~~~~~~~~p~i~iiTni~~dH~~~~~-t~e~i~~ 144 (402)
+.. ....++|++|+|+| ++++|.++. ++|+++|||||++||+++|+ |+|+|++
T Consensus 110 ~~~~~~~~~~~~t~fe~~t~~a~~~--f~~~~vd~~VlEvglggrld~tn~-i~p~vaviTnI~~DHld~lG~t~e~ia~ 186 (416)
T PRK10846 110 AEIEAARGDISLTYFEYGTLSALWL--FKQAQLDVVILEVGLGGRLDATNI-VDADVAVVTSIALDHTDWLGPDRESIGR 186 (416)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHH--HHHcCCCEEEEEecCCCCchhhhc-cCCCEEEECCccHHHHHHhcCCHHHHHH
Confidence 011 12467899999999 889999887 79999999999999999998 8999999
Q ss_pred HHHHhccccCCCeEEEEeCCC-hh-hHHHhhcccccEEEeecCCCceeccccccceEEEecCCeeeEEeeeccCcCChhh
Q 015701 145 TKCHLFSHMVNTKLGLLPFGN-QH-LNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222 (402)
Q Consensus 145 ~k~~i~~~~~~~~~~v~n~dd-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~ 222 (402)
+|+++++. ++.+|+|.+| +. ....+....+++..++.. +.+..+. ..+.+..... .+ ..++++ .||
T Consensus 187 ~Ka~Iik~---~~~~V~~~~d~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~--~~--~~~~l~-~~~ 254 (416)
T PRK10846 187 EKAGIFRA---EKPAVVGEPDMPSTIADVAQEKGALLQRRGVD--WNYSVTD--HDWAFSDGDG--TL--ENLPLP-NVP 254 (416)
T ss_pred HHHhhhcC---CCeEEECCccHhHHHHHHHHHhCCcEEEecce--eeeeccC--ceEEEecCcc--cc--ccCCcc-chH
Confidence 99999983 5678888766 43 334444444455443321 1111010 1111111110 01 135666 479
Q ss_pred HHHHHHHHHHHHHH--HcCCCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHccc---C-CCcEE
Q 015701 223 YHNAAVAALSVLGL--DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL---K-GHKCV 296 (402)
Q Consensus 223 ~~Nal~A~~~a~~~--~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~---~-~~~~i 296 (402)
++|+++|+ +++. .++++.+.|+++|++++ +|||||++. ..+ .+|+| +||||++++++++.+ . ++|++
T Consensus 255 ~~N~~~Ai--a~~~~~~~~i~~~~i~~~L~~~~-~~gR~e~~~--~~~-~iI~D-~AHNp~a~~~l~~~L~~~~~~~~ii 327 (416)
T PRK10846 255 LPNAATAL--AALRASGLEVSEQAIRDGIASAI-LPGRFQIVS--ESP-RVILD-VAHNPHAAEYLTGRLKALPKNGRVL 327 (416)
T ss_pred HHHHHHHH--HHHHHcCCCCCHHHHHHHHHhCC-CCceEEEEc--CCC-cEEEE-CCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 99999999 5653 46799999999999998 999999995 334 46666 499999999985544 3 45899
Q ss_pred EEEcCCCCcCCCCCCcchHhhhhccc-cccEEEEe------CCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCC
Q 015701 297 ILLGGQAKVLNGQESNGFEKLIEPLN-HHRCVITF------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN 369 (402)
Q Consensus 297 ~V~g~~~~~~~~~~~~~~~~~~~~l~-~~d~vi~~------g~~~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~ 369 (402)
+|+|.++++. +.+....+. ..|.++++ |.+.+.+.+.+++ ...++++++|++.+.+.+++
T Consensus 328 ~Vfg~~gdkd-------~~~~l~~L~~~~d~viv~~~~~~r~~~~~~l~~~~~~------~~~~~~~~~Ai~~a~~~a~~ 394 (416)
T PRK10846 328 AVIGMLHDKD-------IAGTLACLKSVVDDWYCAPLEGPRGATAEQLAEHLGN------GKSFDSVAQAWDAAMADAKP 394 (416)
T ss_pred EEEEeeCCCC-------HHHHHHHHhhhCCEEEEECCCCCCCCCHHHHHHHhhh------CcccCCHHHHHHHHHHhcCC
Confidence 9999887664 333333333 24554433 3344566665542 24568999999999999999
Q ss_pred CCEEEEcCCCcccccccCh
Q 015701 370 GDAIVLSPGCASFDEFRNF 388 (402)
Q Consensus 370 ~d~vll~~G~~s~~~~~~~ 388 (402)
||+||++ |||+.+.+.
T Consensus 395 gD~VLi~---GS~~~~~~~ 410 (416)
T PRK10846 395 EDTVLVC---GSFHTVAHV 410 (416)
T ss_pred CCEEEEE---CcHHHHHHH
Confidence 9999995 567666555
No 40
>PLN02913 dihydrofolate synthetase
Probab=100.00 E-value=2.1e-41 Score=340.35 Aligned_cols=344 Identities=15% Similarity=0.184 Sum_probs=231.4
Q ss_pred eeeHHHHHHhhC---CCCCcEEEEecCCChhhHHHHHHHHHHhcCCce--eeeccC------------chhhhhhhhhh-
Q 015701 28 VMSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA--FVGGNL------------GNPLSEAAFHC- 89 (402)
Q Consensus 28 ~l~~~~~~~~~~---~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~--~~~g~~------------g~~~~~~~~~~- 89 (402)
-|.|+..+.+.+ ++++++|+||||||||||++||+++|+++|+++ ++++++ |.+++...+..
T Consensus 57 gL~r~~~ll~~LG~P~~~~~vIhVaGTNGKGSt~a~l~~iL~~aG~~vG~fTSPHl~~~~ERi~in~~g~~is~~~~~~~ 136 (510)
T PLN02913 57 DLGRMRRLMDRLGNPHSKFKAVHVAGTKGKGSTAAFLSNILRAQGYSVGCYTSPHLRSIRERISVGKLGKPVSTNTLNDL 136 (510)
T ss_pred CHHHHHHHHHHcCCchhhCcEEEEeCCCchHHHHHHHHHHHHhcCCCeEEECCCCCceeceEEEECCCCCcCCHHHHHHH
Confidence 356666666544 246789999999999999999999999999998 456663 55665543210
Q ss_pred ----------c-------cCC-----------CCCCCccEEEEEeC-cccccCCCcc--ccccEEEEecCCcchhcCCC-
Q 015701 90 ----------I-------ALP-----------SSKPKFQVAVVEVS-SYQMEIPNKY--FCPTVSVVLNLTPDHLERHK- 137 (402)
Q Consensus 90 ----------~-------~~~-----------~~~~~~~~~V~E~~-~~~l~~~~~~--~~p~i~iiTni~~dH~~~~~- 137 (402)
. .+. +...++|++|+|+| +|++|.+++. ..|+++|||||+.||++++|
T Consensus 137 ~~~v~~~~~~~~~~~~~~~T~FE~~T~~A~~~F~~~~vD~aVlEvGlGGrlDaTNvi~~~~p~vsVITnIg~DH~~~LG~ 216 (510)
T PLN02913 137 FHGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQENVDIAVIEAGLGGARDATNVIDSSGLAASVITTIGEEHLAALGG 216 (510)
T ss_pred HHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhCCCCEEEEEecCCCCcccccccCCCCCcEEEEccccHHHHhhhcc
Confidence 0 000 23567899999999 6889999873 23599999999999999996
Q ss_pred CHHHHHHHHHHhccccCCCeEEEEeC-CChhhHHH----hhcccccEEEeecC-CCceecc-c-cccceEEEec-----C
Q 015701 138 TMKNYALTKCHLFSHMVNTKLGLLPF-GNQHLNEA----IKGHRFNLAWIGAF-PGVKIDT-E-AKTASFEVPA-----V 204 (402)
Q Consensus 138 t~e~i~~~k~~i~~~~~~~~~~v~n~-dd~~~~~~----~~~~~~~~~~~~~~-~~~~~~~-~-~~~~~~~~~~-----~ 204 (402)
|+|+|+++|++|++ ++..+|++. ..+....+ +....++++.++.. ..+.... . .....+.+.. .
T Consensus 217 Tle~IA~eKagIik---~g~pvV~~~~~~~~~~~vi~~~a~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (510)
T PLN02913 217 SLESIALAKSGIIK---QGRPVVLGGPFLPHIESILRDKASSMNSPVVSASDPGVRSSIKGIITDNGKPCQSCDIVIRVE 293 (510)
T ss_pred cHHHHHHHHhhhcc---CCCCEEECCCCCHHHHHHHHHHHHHhCCCEEEeccccccceeecccccCCceeEEeccccccc
Confidence 99999999999998 566788874 33433333 33345566665321 1111100 0 0111122110 0
Q ss_pred C---eeeEEeeeccCcCChhhHHHHHHHHHHHHHHHc-----CCCHHHHHHHhhcCCCCCCceeEEEee------cCCeE
Q 015701 205 G---VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI-----GVDVEALNSTIEILRTPPHRMQIVHRD------IQGVT 270 (402)
Q Consensus 205 ~---~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~l-----gi~~~~i~~~L~~~~~~~gR~e~~~~~------~~~~~ 270 (402)
+ .......+.++++|.||+.|+++|+ +++..+ +++.+.|.++|++++ ||||||++... .++..
T Consensus 294 ~~~~~~~~~~~~~l~L~G~hq~~Naa~Al--aa~~~L~~~~~~i~~~~I~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~ 370 (510)
T PLN02913 294 KDDPLFIELSDVNLRMLGSHQLQNAVTAA--CAALCLRDQGWRISDASIRAGLENTN-LLGRSQFLTSKEAEVLGLPGAT 370 (510)
T ss_pred cccccccccccccCCCCCHHHHHHHHHHH--HHHHHHHhcCCCCCHHHHHHHHHhCC-CCCceEEeeccccccccCCCCE
Confidence 0 0001112468999999999999999 677766 799999999999999 99999998421 12456
Q ss_pred EEEcCCCCCHHHHHHHHcccC----CCcEEEEEcCCCCcCCCCCCcchHhhhhcc-c--cccEEEEeCC----------C
Q 015701 271 WVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFEKLIEPL-N--HHRCVITFGY----------S 333 (402)
Q Consensus 271 iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l-~--~~d~vi~~g~----------~ 333 (402)
+|+|+ +|||+|++++++.+. .+|+++|+|++.+|. +.++++.+ . ..|.++++.. +
T Consensus 371 vIlDg-AHNp~s~~al~~~L~~~~~~~ki~~V~gml~DKd-------~~~~l~~l~~~~~~d~v~~~~~~~~~~~~r~~~ 442 (510)
T PLN02913 371 VLLDG-AHTKESAKALVDTIKTAFPEARLALVVAMASDKD-------HLAFASEFLSGLKPEAVFLTEADIAGGKSRSTS 442 (510)
T ss_pred EEEEC-CCCHHHHHHHHHHHHHhcCCCCEEEEEEccCCCC-------HHHHHHHHhcccCCCEEEEEcCCCCCCCCCCCC
Confidence 77775 799999999988773 357889999887653 66666643 2 3577766522 2
Q ss_pred hHHHHHHHHhCCC--Cccc------cccccHHHHHHHHHHhc--CCCCEEEEcCCCcccccccCh
Q 015701 334 GVLIWKTLVNNGL--SIPC------FAVANMKDAVNHARRMA--TNGDAIVLSPGCASFDEFRNF 388 (402)
Q Consensus 334 ~~~~~~~l~~~~~--~~~~------~~~~~~~~ai~~~~~~~--~~~d~vll~~G~~s~~~~~~~ 388 (402)
.+.+.+.+++... ...+ ..+++.++|++.+.+.. .++|.|+++ | |++.+.+.
T Consensus 443 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~v~-G--Slylv~~v 504 (510)
T PLN02913 443 ASALKEAWIKAAPELGIETLLAENNSLLKSLVDASAILRKARTLDPSSVVCVT-G--SLHIVSAV 504 (510)
T ss_pred HHHHHHHHHHhccccCceeeccccccccCCHHHHHHHHHHhcccCCCCEEEEe-C--cHHHHHHH
Confidence 3456665543211 1111 23788999999988766 467888886 5 55555443
No 41
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=100.00 E-value=8.1e-36 Score=295.38 Aligned_cols=253 Identities=21% Similarity=0.212 Sum_probs=180.6
Q ss_pred eeeHHHHHHhhC---C--CCCcEEEEecCCChhhHHHHHHHHHHhcCCcee--eecc----------Cchhhhhhhh---
Q 015701 28 VMSELDFAAQVI---P--RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF--VGGN----------LGNPLSEAAF--- 87 (402)
Q Consensus 28 ~l~~~~~~~~~~---~--~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~--~~g~----------~g~~~~~~~~--- 87 (402)
-|.++..+.+.+ + +++++|+|||||||||||+|+++||++.|++++ ++++ -|.+++...+
T Consensus 41 ~L~rm~~~L~~LG~p~~~~~l~vIhVaGTnGKGSt~a~l~siL~~~G~rvGl~tSPhL~~~rERiring~~Is~e~f~~~ 120 (530)
T PLN02881 41 QFDLLFDYLKILELEEAISRLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLRY 120 (530)
T ss_pred ChHHHHHHHHHcCCCchhhcCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEECCCccCcceeEEEECCEecCHHHHHHH
Confidence 355555554433 2 467899999999999999999999999999984 4555 2556655321
Q ss_pred --------hhcc-C----C-------------CCCCCccEEEEEeC-cccccCCCccccccEEEEecCCcchhcCCC-CH
Q 015701 88 --------HCIA-L----P-------------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TM 139 (402)
Q Consensus 88 --------~~~~-~----~-------------~~~~~~~~~V~E~~-~~~l~~~~~~~~p~i~iiTni~~dH~~~~~-t~ 139 (402)
.... . + +...++|++|+|+| ++++|.++...+|+++|||||+.||+++++ |+
T Consensus 121 f~~v~~~l~~~~~~~~~~pt~Fe~lTlla~~~F~~~~vD~aVlEvGlgGr~DaTnvi~~p~v~vITnIg~DH~~~LG~Tl 200 (530)
T PLN02881 121 FWWCWDRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVAILEVGLGGRLDATNVVQKPVVCGITSLGYDHMEILGDTL 200 (530)
T ss_pred HHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEEecCCCCchhhhccCCCCEEEEccccHHHHHhhcCCH
Confidence 1100 0 1 12456899999999 789999987458999999999999999998 99
Q ss_pred HHHHHHHHHhccccCCCeEEEEeCCChhhHHHh----hcccccEEEeecCCCceeccccccceEEEecCCeeeEEeeecc
Q 015701 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM 215 (402)
Q Consensus 140 e~i~~~k~~i~~~~~~~~~~v~n~dd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 215 (402)
|+|+.+|++|++ ++..+|...++|.+..+. ....++...++... .+. +....+
T Consensus 201 e~IA~~KagI~k---~g~p~vt~~q~~ea~~vl~~~A~e~~a~l~~v~~~~-----------~~~---------~~~~~l 257 (530)
T PLN02881 201 GKIAGEKAGIFK---PGVPAFTVPQPDEAMRVLEERASELGVPLQVVEPLD-----------SYG---------LSGLKL 257 (530)
T ss_pred HHHHHHHHHHHh---cCCCEEEeCCChHHHHHHHHHHHHhCCcEEEecccc-----------cce---------ecccCC
Confidence 999999999998 455566665666655543 23334443332110 000 111368
Q ss_pred CcCChhhHHHHHHHHHHHHHHHc---------------CCCHHHHHHHhhcCCCCCCceeEEEe------ecCCeEEEEc
Q 015701 216 KVMGRHNYHNAAVAALSVLGLDI---------------GVDVEALNSTIEILRTPPHRMQIVHR------DIQGVTWVDD 274 (402)
Q Consensus 216 ~l~G~~~~~Nal~A~~~a~~~~l---------------gi~~~~i~~~L~~~~~~~gR~e~~~~------~~~~~~iidD 274 (402)
++.|.||..|+++|+ +++..+ ...++.++++|+++. ||||||++.. ..++..+|.|
T Consensus 258 ~L~G~~Q~~NaalAl--a~~~~~l~~~~~~~~~~~~~~~~l~~~i~~GL~~~~-wpGR~e~v~~~~~~~~~~~~~~~~LD 334 (530)
T PLN02881 258 GLAGEHQYLNAGLAV--ALCSTWLQRTGHEEFEALLQAGTLPEQFIKGLSTAS-LQGRAQVVPDSYINSEDSGDLVFYLD 334 (530)
T ss_pred CCCChhHHHhHHHHH--HHHHHHHhhccccccccccccCCCHHHHHHHHHhCC-CCceEEEeccccccccCCCCCeEEEE
Confidence 899999999999999 555432 234568999999999 9999999941 0133445555
Q ss_pred CCCCCHHHHHHHHcccC-----C-------------------------CcEEEEEcCCCCcCC
Q 015701 275 SKATNLEATCTGLMDLK-----G-------------------------HKCVILLGGQAKVLN 307 (402)
Q Consensus 275 ~~a~np~s~~~al~~~~-----~-------------------------~~~i~V~g~~~~~~~ 307 (402)
+||||+|++++.+.|. . +++++|||++.++..
T Consensus 335 -GAHNp~s~~~l~~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvF~~~~dkD~ 396 (530)
T PLN02881 335 -GAHSPESMEACARWFSSAIKGDEQSPGSGYGPHGGGGKSEDTESNKISEQILLFNCMSVRDP 396 (530)
T ss_pred -CCCCHHHHHHHHHHHHHHhcccccCCcccccccccccccccccccCCCCEEEEEcCCCCCCH
Confidence 7999999998887762 1 268999999988753
No 42
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.98 E-value=2.1e-32 Score=285.69 Aligned_cols=250 Identities=18% Similarity=0.208 Sum_probs=173.1
Q ss_pred ccccCCCc-HHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeeccCchhhhhhh
Q 015701 8 LLEFQLKA-TGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86 (402)
Q Consensus 8 ~~~~~~~~-p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~g~~~~~~~ 86 (402)
+|.++..+ |....+++.+.+++..+..... +.+.|+|+||||||||||++||+++|+..|.++++.++.|.++....
T Consensus 446 sPgi~~~~~p~~g~~r~v~~~Iid~L~~~~~--~~ripiIaVTGTnGKTTTt~lla~iL~~~G~~vg~~~t~G~~i~~~~ 523 (727)
T PRK14016 446 APGLRMHLAPSEGKPRNVGEAIVDMLFPEGD--DGRIPIVAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDGVYIDGRL 523 (727)
T ss_pred CcchhhccCCCCCcchhHHHHHHHHhcccCC--CCceeEEEEECCCCchHHHHHHHHHHHHcCCeEEEECCCCEEECCEE
Confidence 44454433 5444445444455444322111 13679999999999999999999999999999877777665542211
Q ss_pred hh--------hccCCCCCCCccEEEEEeCcccccCCCc-cccccEEEEecCCcchhcCC--CCHHHHHHHHHHhccccCC
Q 015701 87 FH--------CIALPSSKPKFQVAVVEVSSYQMEIPNK-YFCPTVSVVLNLTPDHLERH--KTMKNYALTKCHLFSHMVN 155 (402)
Q Consensus 87 ~~--------~~~~~~~~~~~~~~V~E~~~~~l~~~~~-~~~p~i~iiTni~~dH~~~~--~t~e~i~~~k~~i~~~~~~ 155 (402)
+. .......+++.+++|+|+|++++..... +.+|+++|||||++||++++ +|+|+|+++|+.+++.+++
T Consensus 524 i~~gd~t~p~s~~~ll~~~~~d~aVlE~s~~~il~~gl~~~~pdvaVvTNI~~DHL~~~~~~t~E~~~~~K~~i~~~v~~ 603 (727)
T PRK14016 524 IDKGDCTGPKSARRVLMNPDVEAAVLETARGGILREGLAYDRCDVGVVTNIGEDHLGLGGINTLEDLAKVKRVVVEAVKP 603 (727)
T ss_pred eccccccCHHHHHHHhcCCCCCEEEEEcCCCchhhcCCcccccCeEEEcCCCHHHhhccCCCCHHHHHHHHHHHHhhhCC
Confidence 10 0000002456788999999887743332 36899999999999999987 4999999999999998888
Q ss_pred CeEEEEeCCChhhHHHhhcccccEEEeecCCCcee-----ccccccc-----eEEEecCCeeeE---EeeeccCcCC--h
Q 015701 156 TKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKI-----DTEAKTA-----SFEVPAVGVVSQ---LQLHNMKVMG--R 220 (402)
Q Consensus 156 ~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-----~~~~~~~~~~~~---~~~~~l~l~G--~ 220 (402)
+|.+|+|.|||.+..++.....++++|+.+++..+ ....... .+....++.+.. +..+.+.++| .
T Consensus 604 ~g~aVlNaDD~~~~~~~~~~~~~vi~fs~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~i~l~~~G~~~ 683 (727)
T PRK14016 604 DGYAVLNADDPMVAAMAERCKGKVIFFSMDPDNPVIAEHRAQGGRAVYVEGDYIVLAEGGWEIRIISLADIPLTLGGKAG 683 (727)
T ss_pred CCeEEEcCCCHHHHHHHHhCCCcEEEEeCCCCChHHHHHHHhCCceEEEeCCEEEEEeCCcceeeccccccceecCCcch
Confidence 99999999999998887766677888886532111 0011000 011111111111 1122343477 6
Q ss_pred hhHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCC----CCCceeE
Q 015701 221 HNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT----PPHRMQI 261 (402)
Q Consensus 221 ~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~----~~gR~e~ 261 (402)
||++|+++|+ |+++.+|++.+.|.++|++|++ .||||+.
T Consensus 684 hnv~NalAAi--Aaa~~lGi~~~~I~~~L~sF~~~~~~~pGR~n~ 726 (727)
T PRK14016 684 FNIENALAAI--AAAWALGIDIELIRAGLRTFVSDAAQAPGRFNL 726 (727)
T ss_pred hhHHHHHHHH--HHHHHcCCCHHHHHHHHHhcCCCccCCCccccc
Confidence 9999999999 8999999999999999999986 9999985
No 43
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=99.97 E-value=4.8e-31 Score=233.54 Aligned_cols=176 Identities=25% Similarity=0.350 Sum_probs=131.3
Q ss_pred EecCCChhhHHHHHHHHHHhcCCceeeecc----CchhhhhhhhhhccCCCCCCCccEEEEEeCcccccC--CCcccccc
Q 015701 48 VTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI--PNKYFCPT 121 (402)
Q Consensus 48 VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~--~~~~~~p~ 121 (402)
||||||||||++||+++|+++|..+++.|+ +|.+....... ..+.+++|+|+|++++.. ....++|+
T Consensus 1 ITGT~GKTTTt~ml~~iL~~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~V~E~~~~~~~~~~l~~~~~p~ 73 (188)
T PF08245_consen 1 ITGTNGKTTTTRMLAHILSAAGKVVGTIGNTNNQIGLPLLLLNAR-------EGGADIAVLEVSEGGLGDERLSFLLKPD 73 (188)
T ss_dssp EESSSSHHHHHHHHHHHHHHTTEEEEEESSCHHHHHHHHHHHHHH-------HTTSSEEEEEESSSCCCTSTTSGGSBES
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCcccccccccchHHHHHHHhhhc-------ccccceeeeeccCCccccceeeeeeehh
Confidence 899999999999999999999998888787 44443333321 346889999999875433 22237999
Q ss_pred EEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEEeCCChhhHHHhhcccccEEEeecCCCceec-----ccccc
Q 015701 122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID-----TEAKT 196 (402)
Q Consensus 122 i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 196 (402)
++|||||++||+++|+|+|+|+++|+++++.+++++.+|+|.|||.+.........++.+|+.+...++. .....
T Consensus 74 i~viTni~~dH~~~~~s~~~~~~~k~~~~~~~~~~~~~v~n~dd~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~ 153 (188)
T PF08245_consen 74 IAVITNIGPDHLDRFGSIEEYAEAKAKIFRGLKPGGVAVLNADDPELAEIAANSKCKVITFGLDNSADIRASNISYSEEG 153 (188)
T ss_dssp EEEE----SSSHCCTSSHHHHHHHHHGGHTTTSTTSEEEEETTSHHHHHHHHHHTTTEEEEESSSSSEEEEEEEEEETTE
T ss_pred eeeeceecccccccCCCHHHHHHHHHhhhhhcccceEEEecCCCHHHHHHHHhcCCcEEEeccCcccceeeeeEEEecCC
Confidence 9999999999999999999999999999999998999999999998888777777789999987654322 11122
Q ss_pred ceEEEe-cCCeeeEEeeeccCcCChhhHHHHHHHHHHHHH
Q 015701 197 ASFEVP-AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG 235 (402)
Q Consensus 197 ~~~~~~-~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~ 235 (402)
..+.+. ..+.... +.++++|.||++|+++|+ ++|
T Consensus 154 ~~~~i~~~~~~~~~---~~~~l~G~hn~~NalaA~--a~a 188 (188)
T PF08245_consen 154 GRFRIISYNGEEFE---IELPLPGKHNVENALAAI--AAA 188 (188)
T ss_dssp EEEEEEEETTEEEE---EEESSSSHHHHHHHHHHH--HHH
T ss_pred cEEEEEEecCceEE---EEecCCCHHHHHHHHHHH--HhC
Confidence 222211 1222233 479999999999999999 554
No 44
>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]
Probab=99.97 E-value=2.1e-30 Score=246.97 Aligned_cols=241 Identities=23% Similarity=0.271 Sum_probs=174.4
Q ss_pred CCCcEEEEecCCChhhHHHHHHHHHHhcCCce--eeeccC----------chhhhhhhhhhc------------------
Q 015701 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA--FVGGNL----------GNPLSEAAFHCI------------------ 90 (402)
Q Consensus 41 ~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~--~~~g~~----------g~~~~~~~~~~~------------------ 90 (402)
.++.+||||||+||+|||+++.+||+++|+++ ++++++ |.|++...+...
T Consensus 70 ~~l~iIHVAGTkGKGStcaF~~SILr~~g~rtG~yTSPHLl~vrErIriNGqpIS~e~F~~~f~~v~~~lk~~~~~~~~~ 149 (496)
T KOG2525|consen 70 NSLNIIHVAGTKGKGSTCAFTESILRQQGLRTGFYTSPHLLSVRERIRINGQPISEEKFTKYFWEVYERLKSTKLKEVSM 149 (496)
T ss_pred hheeEEEEecCCCCcchHHHHHHHHHhcccccccccChhhcchhheEEECCEECCHHHHHHHHHHHHHHHHHhhccccCC
Confidence 57889999999999999999999999999997 567764 667766532210
Q ss_pred --cC---------CCCCCCccEEEEEeC-cccccCCCccccccEEEEecCCcchhcCCC-CHHHHHHHHHHhccccCCCe
Q 015701 91 --AL---------PSSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTK 157 (402)
Q Consensus 91 --~~---------~~~~~~~~~~V~E~~-~~~l~~~~~~~~p~i~iiTni~~dH~~~~~-t~e~i~~~k~~i~~~~~~~~ 157 (402)
.+ -+...++|++|+|+| +|++|.+++.-+|-++.||+||.||++.++ |+++|+.+|+++|+. +.
T Consensus 150 p~yF~fLT~lAF~~F~~enVdvaViEvGlGG~~DaTNvI~kpvvcgITslG~DH~~~LG~tL~eIA~eKAGIfK~---gv 226 (496)
T KOG2525|consen 150 PTYFEFLTLLAFHVFVKENVDVAVIEVGLGGELDATNVIEKPVVCGITSLGLDHTSFLGNTLSEIAWEKAGIFKE---GV 226 (496)
T ss_pred CchhhhhHhhhheeeeecCCcEEEEEeccccccccccccccceEEEEeecCCchHHHHhhHHHHHHHHhcccccc---CC
Confidence 00 023668999999999 789999998678999999999999999995 999999999999984 33
Q ss_pred EEEEeCCChhhHHHhhcccc-c-EEEeecCCCceeccccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHH
Q 015701 158 LGLLPFGNQHLNEAIKGHRF-N-LAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG 235 (402)
Q Consensus 158 ~~v~n~dd~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~ 235 (402)
.++.-..++.++.+.+.... . +..+-..+ .....+....+.+.|.||..|+.+|+.++-+
T Consensus 227 paft~~q~~e~~nvL~~ra~e~~~~L~~v~p------------------~~~~~ls~~~lgl~g~hq~~na~lA~~L~~~ 288 (496)
T KOG2525|consen 227 PAFTVPQPPEALNVLKERASELGVPLFVVPP------------------LEAYELSGVNLGLIGTHQWSNASLAVQLASE 288 (496)
T ss_pred ceEEcCCcHHHHHHHHHHHHhcCCCceecCC------------------chhhhhcCCcccccccchhhhhHHHHHHHHH
Confidence 44544466677666543211 1 10000000 0000111124789999999999999954333
Q ss_pred HH-------c--------C--CCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccC-------
Q 015701 236 LD-------I--------G--VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK------- 291 (402)
Q Consensus 236 ~~-------l--------g--i~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~------- 291 (402)
+. . + ++ +....+|+++. ||||.|++. ..+++.++.| +|||++||+++.+.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~i~-~~~l~GL~~~~-wPGR~qil~-~~~~~~~llD-GAHt~eSaea~~~w~~~~~~~~~ 364 (496)
T KOG2525|consen 289 WLIQNGRVAEGVLDALQTSGLIP-PAFLSGLASTD-WPGRLQILE-YGRGVTWLLD-GAHTKESAEACAKWFRKAVRGLK 364 (496)
T ss_pred HHHhcCcccccCCCccccccCCC-HHHhcchhhcc-CCCceEEEe-cCCCcEEEec-CCCCHHHHHHHHHHHHHHhccCC
Confidence 32 1 1 34 44566999999 999999996 3467767777 7999999999988772
Q ss_pred CCc-EEEEEcCCCCcC
Q 015701 292 GHK-CVILLGGQAKVL 306 (402)
Q Consensus 292 ~~~-~i~V~g~~~~~~ 306 (402)
..+ +|++|.++++++
T Consensus 365 ~~~~~illfn~t~~~d 380 (496)
T KOG2525|consen 365 KLTSLILLFNCTSDRD 380 (496)
T ss_pred CccceEEEEEecCCcc
Confidence 122 589999998764
No 45
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=99.25 E-value=9.3e-12 Score=96.39 Aligned_cols=76 Identities=24% Similarity=0.278 Sum_probs=57.9
Q ss_pred CCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHccc----CCCcEEEEEcCCCCcCCCCCCcchHhhhhcccc-ccEEEE
Q 015701 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVIT 329 (402)
Q Consensus 255 ~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~----~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~-~d~vi~ 329 (402)
||||||++. ..+++.+|+| |||||+|++++++.+ +.+|+++|+|++.++|... ...+.++.+.+.. .|.+++
T Consensus 1 vpgR~e~v~-~~~~~~vi~D-~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~~~d~g~~~-~~~~~~~~~~~~~~~d~vi~ 77 (91)
T PF02875_consen 1 VPGRMEVVR-EPNGPTVIDD-YAHNPDSIRALLEALKELYPKGRIIAVFGAMGDLGSKD-KDFHEEIGELAAQLADVVIL 77 (91)
T ss_dssp ETTSSEEEE-EETTEEEEEE-T--SHHHHHHHHHHHHHHCTTSEEEEEEEEBTT-HTSH-HHCHHHHHHHHTTCSSEEEE
T ss_pred CCCCcEEEe-eCCCcEEEEE-CCCCHHHHHHHHHHHHHhccCCcEEEEEcccccccccc-HHHHHHHHHHHHhcCCEEEE
Confidence 699999997 3578999999 799999999999887 4689999999998866544 2345677777665 677888
Q ss_pred eCCC
Q 015701 330 FGYS 333 (402)
Q Consensus 330 ~g~~ 333 (402)
++.+
T Consensus 78 ~~~~ 81 (91)
T PF02875_consen 78 TGDN 81 (91)
T ss_dssp ETSB
T ss_pred cCCC
Confidence 7654
No 46
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.12 E-value=0.17 Score=47.21 Aligned_cols=117 Identities=18% Similarity=0.256 Sum_probs=71.0
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCceee----------ecc-Cchhhhhhhhh--------hccCC-------
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV----------GGN-LGNPLSEAAFH--------CIALP------- 93 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~~----------~g~-~g~~~~~~~~~--------~~~~~------- 93 (402)
+..+|||||+- ||||...-|...|...|.++.. +|. +|.-+-...+. ...+.
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 55799999985 7999999999999999998632 222 23222111111 00000
Q ss_pred ---------CCCCCccEEEEEeCc-ccccCCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEEeC
Q 015701 94 ---------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (402)
Q Consensus 94 ---------~~~~~~~~~V~E~~~-~~l~~~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~n~ 163 (402)
.....+|+.++|+-+ |+-|..-. --.|+.+++.+. . .=+++--.|.+++.- ...+++|.
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~-~~aDt~~~v~~p-----g--~GD~~Q~iK~GimEi---aDi~vINK 198 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSEVDIA-NMADTFLVVMIP-----G--AGDDLQGIKAGIMEI---ADIIVINK 198 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcchhHHh-hhcceEEEEecC-----C--CCcHHHHHHhhhhhh---hheeeEec
Confidence 113358899999984 66553211 234666666542 1 224455667777763 67899999
Q ss_pred CChhhH
Q 015701 164 GNQHLN 169 (402)
Q Consensus 164 dd~~~~ 169 (402)
.|....
T Consensus 199 aD~~~A 204 (323)
T COG1703 199 ADRKGA 204 (323)
T ss_pred cChhhH
Confidence 885443
No 47
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=93.08 E-value=0.65 Score=37.09 Aligned_cols=98 Identities=16% Similarity=0.107 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHcccC----CCcEEEEEcCCCCcC-CCC--CCcchHhhhhccccccEEEEeCCChHHHHHHHHhCCCC-c
Q 015701 277 ATNLEATCTGLMDLK----GHKCVILLGGQAKVL-NGQ--ESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLS-I 348 (402)
Q Consensus 277 a~np~s~~~al~~~~----~~~~i~V~g~~~~~~-~~~--~~~~~~~~~~~l~~~d~vi~~g~~~~~~~~~l~~~~~~-~ 348 (402)
.-||.++.++++.+. +..+++++.+..--| +-+ ....++.+.+. +...+++.|....++.-+|+-+|++ .
T Consensus 2 vKNP~G~n~~l~~i~~~~~~~~~~~~lNd~~aDG~DvSWiWDvdFE~L~~~--~i~~viv~G~Ra~DmalRLkyAGv~~~ 79 (113)
T PF08353_consen 2 VKNPAGFNEVLDMIASDPGPKSVLIALNDNYADGRDVSWIWDVDFEKLADP--NIKQVIVSGTRAEDMALRLKYAGVDEE 79 (113)
T ss_pred CcCcHHHHHHHHHHHhCCCCceEEEEecCCCCCCccceEEeecCHHHHhcC--CCCEEEEEeeeHHHHHhHeeecCcchH
Confidence 358999999999882 234555565432111 111 12234544322 2578999999999999999888874 2
Q ss_pred cccccccHHHHHHHHHHhcCCCCEEEEc
Q 015701 349 PCFAVANMKDAVNHARRMATNGDAIVLS 376 (402)
Q Consensus 349 ~~~~~~~~~~ai~~~~~~~~~~d~vll~ 376 (402)
++.+.+|.++|++.+.....+++.+.+.
T Consensus 80 ~i~v~~d~~~a~~~~~~~~~~~~~~yil 107 (113)
T PF08353_consen 80 KIIVEEDLEEALDAFLIKSDPTDKVYIL 107 (113)
T ss_pred HeEecCCHHHHHHHHHHhcCCCCcEEEE
Confidence 4667899999999966556666666553
No 48
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.06 E-value=1.2 Score=42.74 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=28.4
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCcee
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~ 73 (402)
.+..+|+|+|+. ||||.+..+...|+..|.++.
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~ 88 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVA 88 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 355699999986 699999999999999998874
No 49
>PRK15453 phosphoribulokinase; Provisional
Probab=91.83 E-value=0.27 Score=45.84 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=24.5
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhcC
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLG 69 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~~~g 69 (402)
++.++|+|||+. ||||++..++++|...+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~ 33 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRREN 33 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 466899999985 69999999999987544
No 50
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=91.38 E-value=1.3 Score=33.22 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=23.9
Q ss_pred EEEecC--CChhhHHHHHHHHHHhcCCceee
Q 015701 46 LAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 46 I~VTGT--~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
|.++|. .||||++..++..|++.|.++..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~ 32 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLL 32 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 556655 69999999999999999988743
No 51
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=90.82 E-value=0.33 Score=41.35 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=32.5
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHHhcCCceeeeccCch
Q 015701 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGNLGN 80 (402)
Q Consensus 43 ~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~~~g~~g~ 80 (402)
+++++|+|.+ ||||..+=|-..|++.|+++.+.-+.+.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence 5899999984 8999999999999999999977665444
No 52
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=90.73 E-value=0.31 Score=44.24 Aligned_cols=32 Identities=19% Similarity=0.414 Sum_probs=28.4
Q ss_pred EEEEecCCChhhHHHHHHHHHHhcCCceeeec
Q 015701 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (402)
Q Consensus 45 vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g 76 (402)
+|+|+|.-||||+..-|+.-|...|+++.+..
T Consensus 1 vi~~vG~gGKTtl~~~l~~~~~~~g~~v~~TT 32 (232)
T TIGR03172 1 VIAFVGAGGKTSTMFWLAAEYRKEGYRVLVTT 32 (232)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHCCCeEEEEC
Confidence 58999999999999999999999999885433
No 53
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=89.80 E-value=0.47 Score=43.99 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=22.7
Q ss_pred ecCCChhhHHHHHHHHHHhcCCcee
Q 015701 49 TGTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 49 TGT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
-|-.||||++.-|++.|...|+++.
T Consensus 9 KGGvGKTT~~~nLA~~La~~G~kVl 33 (270)
T cd02040 9 KGGIGKSTTTQNLSAALAEMGKKVM 33 (270)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCeEE
Confidence 5788999999999999999998874
No 54
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=89.29 E-value=0.53 Score=46.64 Aligned_cols=33 Identities=30% Similarity=0.521 Sum_probs=29.2
Q ss_pred CCcEEEEe---cCCChhhHHHHHHHHHHhcCCceee
Q 015701 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 42 ~~~vI~VT---GT~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
++++|+|+ |-.|||||+.-|++.|...|++|..
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLl 155 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLA 155 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEE
Confidence 45899999 8889999999999999999998743
No 55
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=89.10 E-value=0.54 Score=43.83 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=26.0
Q ss_pred cEEEEe--cCCChhhHHHHHHHHHHhcCCceee
Q 015701 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 44 ~vI~VT--GT~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
++|+|+ |-.|||||+.-|+..|.+.|+++..
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVll 34 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILL 34 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEE
Confidence 567776 5678999999999999999998843
No 56
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=88.96 E-value=0.59 Score=46.00 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=29.2
Q ss_pred CCcEEEEe---cCCChhhHHHHHHHHHHhcCCceee
Q 015701 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 42 ~~~vI~VT---GT~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
+.++|+|+ |-.|||||+.-|++.|...|++|..
T Consensus 105 ~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLl 140 (387)
T PHA02519 105 NPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLL 140 (387)
T ss_pred CceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEE
Confidence 36799999 8889999999999999999998743
No 57
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=88.65 E-value=0.65 Score=44.49 Aligned_cols=33 Identities=27% Similarity=0.480 Sum_probs=29.9
Q ss_pred CCcEEEE----ecCCChhhHHHHHHHHHHhcCCceee
Q 015701 42 SIKILAV----TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 42 ~~~vI~V----TGT~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
+.|+|.| .|-.|||+++.+|...|++.|+++++
T Consensus 48 ~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~i 84 (325)
T PRK00652 48 PVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGV 84 (325)
T ss_pred CCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEE
Confidence 5689999 89999999999999999999998853
No 58
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=88.33 E-value=0.67 Score=45.67 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=29.3
Q ss_pred CCcEEEEe---cCCChhhHHHHHHHHHHhcCCceee
Q 015701 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 42 ~~~vI~VT---GT~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
..++|+|+ |-.|||||+.-|++.|...|++|..
T Consensus 105 ~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLl 140 (388)
T PRK13705 105 FPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLL 140 (388)
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEE
Confidence 45799999 8999999999999999999998743
No 59
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=88.23 E-value=0.44 Score=40.82 Aligned_cols=25 Identities=40% Similarity=0.695 Sum_probs=19.6
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHHhcCCce
Q 015701 44 KILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 44 ~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~ 72 (402)
+.|+||||- ||||+|..|+ ..|+.+
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~----~lg~~~ 27 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR----ELGYKV 27 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH----HhCCce
Confidence 369999995 6999999888 346665
No 60
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=87.97 E-value=0.75 Score=42.90 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=25.0
Q ss_pred cEEEEe--cCCChhhHHHHHHHHHHhcCCcee
Q 015701 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 44 ~vI~VT--GT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
++|+|+ |-.|||||+.-|++.|.+.|+++.
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVL 33 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVM 33 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEE
Confidence 456665 556799999999999999999874
No 61
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=87.83 E-value=0.5 Score=41.60 Aligned_cols=27 Identities=37% Similarity=0.679 Sum_probs=23.8
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCc
Q 015701 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIE 71 (402)
Q Consensus 45 vI~VTGT--~GKTTt~~ml~~iL~~~g~~ 71 (402)
+|+|+|. .||||++..|...|.+.|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~ 29 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence 6889985 68999999999999988865
No 62
>COG2403 Predicted GTPase [General function prediction only]
Probab=87.82 E-value=0.6 Score=44.75 Aligned_cols=31 Identities=35% Similarity=0.533 Sum_probs=28.6
Q ss_pred CCcEEEEecC---CChhhHHHHHHHHHHhcCCce
Q 015701 42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 42 ~~~vI~VTGT---~GKTTt~~ml~~iL~~~g~~~ 72 (402)
..|+|+|||| .|||+++.+++.+|++.|+++
T Consensus 125 ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv 158 (449)
T COG2403 125 EKPVIAVTATRTGVGKSAVSRYVARLLRERGYRV 158 (449)
T ss_pred cCceEEEEEeccccchhHHHHHHHHHHHHcCCce
Confidence 5689999998 699999999999999999986
No 63
>PHA02518 ParA-like protein; Provisional
Probab=87.67 E-value=0.83 Score=40.46 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.4
Q ss_pred EecCCChhhHHHHHHHHHHhcCCcee
Q 015701 48 VTGTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 48 VTGT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
--|-.||||++..|++.|...|.++.
T Consensus 8 ~KGGvGKTT~a~~la~~la~~g~~vl 33 (211)
T PHA02518 8 QKGGAGKTTVATNLASWLHADGHKVL 33 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 34677899999999999999998874
No 64
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=87.60 E-value=1.2 Score=41.42 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=28.1
Q ss_pred CCCcEEEEe---cCCChhhHHHHHHHHHHhcCCce
Q 015701 41 RSIKILAVT---GTNGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 41 ~~~~vI~VT---GT~GKTTt~~ml~~iL~~~g~~~ 72 (402)
+..++|+|| |..||||++..|+..|...|.++
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~V 135 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKT 135 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 466899999 67799999999999999888776
No 65
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=87.32 E-value=0.85 Score=41.05 Aligned_cols=31 Identities=35% Similarity=0.483 Sum_probs=27.8
Q ss_pred CcEEEEecCC---ChhhHHHHHHHHHHhcCCcee
Q 015701 43 IKILAVTGTN---GKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 43 ~~vI~VTGT~---GKTTt~~ml~~iL~~~g~~~~ 73 (402)
++.+.||||. |||.+++.|.+.|.++|+++.
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~ 35 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVA 35 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeE
Confidence 4689999995 999999999999999998873
No 66
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=87.31 E-value=0.88 Score=41.25 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=29.0
Q ss_pred CcEEEEec--CCChhhHHHHHHHHHHhcCCceeeec
Q 015701 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (402)
Q Consensus 43 ~~vI~VTG--T~GKTTt~~ml~~iL~~~g~~~~~~g 76 (402)
+++|+|+| -.||||++.-|...|+..|+++.+.-
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK 36 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAK 36 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence 46899999 78999999999999999999886543
No 67
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=86.20 E-value=1 Score=42.15 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=25.0
Q ss_pred cEEEEe--cCCChhhHHHHHHHHHHhcCCcee
Q 015701 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 44 ~vI~VT--GT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
++|+|+ |-.|||||+.-|++.|...|+++.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVL 33 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVL 33 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEE
Confidence 455555 567899999999999999999874
No 68
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=86.05 E-value=1.7 Score=38.46 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=26.9
Q ss_pred CCCcEEEEecC---CChhhHHHHHHHHHHhcCCce
Q 015701 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 41 ~~~~vI~VTGT---~GKTTt~~ml~~iL~~~g~~~ 72 (402)
.+.++|+|+++ .||||++..|+..|...|.++
T Consensus 15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rV 49 (204)
T TIGR01007 15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKT 49 (204)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeE
Confidence 35788999854 479999999999999988776
No 69
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=85.88 E-value=1.2 Score=40.54 Aligned_cols=30 Identities=27% Similarity=0.295 Sum_probs=25.0
Q ss_pred cEEEEe---cCCChhhHHHHHHHHHHhcCCcee
Q 015701 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 44 ~vI~VT---GT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
++|+|+ |-.|||||+..|+..|...|.++.
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~Vl 34 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVA 34 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEE
Confidence 466665 556899999999999999998874
No 70
>PRK10037 cell division protein; Provisional
Probab=85.74 E-value=1.2 Score=40.93 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=25.0
Q ss_pred cEEEEe---cCCChhhHHHHHHHHHHhcCCcee
Q 015701 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 44 ~vI~VT---GT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
++|+|. |-.|||||+.-|+..|.+.|++|.
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVL 34 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVL 34 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEE
Confidence 466666 567899999999999999998773
No 71
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=85.68 E-value=1.2 Score=41.63 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=28.9
Q ss_pred CcEEEEec--CCChhhHHHHHHHHHHhcCCceeeecc
Q 015701 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (402)
Q Consensus 43 ~~vI~VTG--T~GKTTt~~ml~~iL~~~g~~~~~~g~ 77 (402)
+++|+|+| ..||||.+.-|...|++.| ++.+.-+
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKh 36 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKH 36 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEE
Confidence 47899999 8899999999999999999 7755443
No 72
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=85.61 E-value=1.2 Score=43.93 Aligned_cols=32 Identities=31% Similarity=0.541 Sum_probs=27.4
Q ss_pred CCcEEEEe---cCCChhhHHHHHHHHHHhcCCcee
Q 015701 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 42 ~~~vI~VT---GT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
+.++|+|+ |-.|||||+.-|++.|...|.++.
T Consensus 103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVL 137 (387)
T TIGR03453 103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVL 137 (387)
T ss_pred CceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEE
Confidence 45788887 677899999999999999998874
No 73
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=85.31 E-value=1.1 Score=40.07 Aligned_cols=38 Identities=32% Similarity=0.512 Sum_probs=29.9
Q ss_pred cEEEEe---cCCChhhHHHHHHHHHHhcCCceee-eccCchh
Q 015701 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV-GGNLGNP 81 (402)
Q Consensus 44 ~vI~VT---GT~GKTTt~~ml~~iL~~~g~~~~~-~g~~g~~ 81 (402)
++|.|| |-.|||||++-|...|...|.++.. -..+|..
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLR 44 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLR 44 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCch
Confidence 577787 7789999999999999999998743 3345543
No 74
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=85.03 E-value=1.3 Score=43.93 Aligned_cols=35 Identities=14% Similarity=0.275 Sum_probs=30.5
Q ss_pred CcEEEEec--CCChhhHHHHHHHHHHhcCCceeeecc
Q 015701 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (402)
Q Consensus 43 ~~vI~VTG--T~GKTTt~~ml~~iL~~~g~~~~~~g~ 77 (402)
+++|+|+| -.||||.+.-|-..|+..|++|.+.-+
T Consensus 1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH 37 (452)
T PRK14495 1 MRVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKH 37 (452)
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 47999999 789999999999999999999876444
No 75
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=84.98 E-value=1.5 Score=39.04 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=26.8
Q ss_pred CCCcEEEEe---cCCChhhHHHHHHHHHHh-cCCce
Q 015701 41 RSIKILAVT---GTNGKSTVVTFVGQMLNH-LGIEA 72 (402)
Q Consensus 41 ~~~~vI~VT---GT~GKTTt~~ml~~iL~~-~g~~~ 72 (402)
...++|+|+ |-.||||++..|++.|.. .|.++
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~V 68 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTV 68 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeE
Confidence 357899999 678999999999999985 58766
No 76
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=84.83 E-value=1.4 Score=40.14 Aligned_cols=30 Identities=30% Similarity=0.503 Sum_probs=25.3
Q ss_pred cEEEEec---CCChhhHHHHHHHHHHhcCCcee
Q 015701 44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 44 ~vI~VTG---T~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
++|+|++ -.||||++.-|+..|...|.++.
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~Vl 34 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVL 34 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEE
Confidence 5677765 77999999999999999998773
No 77
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=84.82 E-value=0.9 Score=41.51 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=23.9
Q ss_pred EEEEecCCChhhHHHHHHHHHHhcCCce
Q 015701 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 45 vI~VTGT~GKTTt~~ml~~iL~~~g~~~ 72 (402)
++++.|-.||||++.-|++.|...|.+|
T Consensus 6 i~s~kGGvG~TTltAnLA~aL~~~G~~V 33 (243)
T PF06564_consen 6 IVSPKGGVGKTTLTANLAWALARLGESV 33 (243)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHCCCcE
Confidence 4566677899999999999999998765
No 78
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=84.79 E-value=1.1 Score=41.42 Aligned_cols=26 Identities=35% Similarity=0.593 Sum_probs=22.2
Q ss_pred EEEEecCC--ChhhHHHHHHHHHHhcCC
Q 015701 45 ILAVTGTN--GKSTVVTFVGQMLNHLGI 70 (402)
Q Consensus 45 vI~VTGT~--GKTTt~~ml~~iL~~~g~ 70 (402)
+|+|||+. ||||++.-+.++|+..|.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~ 28 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGI 28 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 58999985 799999999999987664
No 79
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=84.67 E-value=0.86 Score=38.13 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=20.7
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
..|-|.||||- ||||+++.|+..+.
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~ 32 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTG 32 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhC
Confidence 45789999995 69999999996653
No 80
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=84.47 E-value=1.6 Score=37.14 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=28.0
Q ss_pred CcEEEEec--CCChhhHHHHHHHHHHhcCCceeee
Q 015701 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (402)
Q Consensus 43 ~~vI~VTG--T~GKTTt~~ml~~iL~~~g~~~~~~ 75 (402)
+++|+|+| -.||||.+..|...|...|+++++.
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~i 35 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVI 35 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 46899999 6799999999999999999887543
No 81
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=83.05 E-value=1.9 Score=40.78 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=27.0
Q ss_pred CCcEEEEe--cCCChhhHHHHHHHHHHhcCCceee
Q 015701 42 SIKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 42 ~~~vI~VT--GT~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
++++|+|. |-.|||||+.-|+..|.+.|+++.+
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLl 37 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILI 37 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEE
Confidence 45677665 5677999999999999999999854
No 82
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=82.79 E-value=1.4 Score=39.28 Aligned_cols=28 Identities=29% Similarity=0.378 Sum_probs=23.3
Q ss_pred EEEEe--cCCChhhHHHHHHHHHHhcCCce
Q 015701 45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 45 vI~VT--GT~GKTTt~~ml~~iL~~~g~~~ 72 (402)
+|+|+ |-.||||++..|++.|.+.|.++
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rv 31 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKV 31 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcE
Confidence 35554 56789999999999999999876
No 83
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=82.57 E-value=1.8 Score=40.76 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=23.5
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhc
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~~~ 68 (402)
+...+|||+|.+ ||||++.+|..+|...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~ 89 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRW 89 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 345699999986 6999999999999753
No 84
>PRK05439 pantothenate kinase; Provisional
Probab=82.44 E-value=2.5 Score=40.24 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=22.9
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhc
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~~~ 68 (402)
...+|+|||+. ||||++..|..+|...
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~~ 113 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALLSRW 113 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 44699999985 6999999999999754
No 85
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=82.37 E-value=2.1 Score=35.62 Aligned_cols=31 Identities=26% Similarity=0.399 Sum_probs=24.4
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCceee
Q 015701 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
|+|+|.|. .||||.++.|-.-|...|+++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ 33 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAV 33 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEE
Confidence 57888886 58999999999999999998753
No 86
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=82.20 E-value=1.9 Score=40.09 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=24.9
Q ss_pred cEEEEe--cCCChhhHHHHHHHHHHh-cCCceee
Q 015701 44 KILAVT--GTNGKSTVVTFVGQMLNH-LGIEAFV 74 (402)
Q Consensus 44 ~vI~VT--GT~GKTTt~~ml~~iL~~-~g~~~~~ 74 (402)
++|+|+ |-.|||||+.-|+..|.+ .|+++..
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLl 36 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFI 36 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEE
Confidence 456665 567899999999999997 5998854
No 87
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=81.99 E-value=1.5 Score=38.03 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=24.0
Q ss_pred EEEEecCCChhhHHHHHHHHHHhcCCcee
Q 015701 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 45 vI~VTGT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
+.+.-|-.||||++..|+..|...|+++.
T Consensus 3 v~~~kGG~GKTt~a~~la~~la~~g~~Vl 31 (195)
T PF01656_consen 3 VTSGKGGVGKTTIAANLAQALARKGKKVL 31 (195)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTS-EE
T ss_pred EEcCCCCccHHHHHHHHHhcccccccccc
Confidence 44556788999999999999999999874
No 88
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=81.97 E-value=2.2 Score=40.55 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=28.6
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCceee
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
+..+|.+.|.| |||||..=|++.|.+.|+++.+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vll 172 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLL 172 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEE
Confidence 45688888887 5999999999999999999854
No 89
>COG4240 Predicted kinase [General function prediction only]
Probab=81.42 E-value=2.7 Score=37.86 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=36.2
Q ss_pred HHhcCCceeeHHHHHHhhCCCCCcEEEEecC--CChhhHHHHHHHHHHhcCC-ce
Q 015701 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGT--NGKSTVVTFVGQMLNHLGI-EA 72 (402)
Q Consensus 21 a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~-~~ 72 (402)
+++.-+|.+.++.-.++-. .+.-+++|.|+ .||||++..|..+|...|. ++
T Consensus 29 ~~dl~Lpll~Kiap~~qe~-grPli~gisGpQGSGKStls~~i~~~L~~kg~ert 82 (300)
T COG4240 29 AQDLHLPLLAKIAPWAQER-GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERT 82 (300)
T ss_pred HHHHHHHHHHhhhhhhhhc-CCceEEEeecCCCCchhhHHHHHHHHHHHhcccce
Confidence 3555556655544444333 34459999997 5799999999999999984 54
No 90
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=81.37 E-value=1.9 Score=39.92 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=26.7
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCc
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIE 71 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~ 71 (402)
+..-+|||+||. ||+||++.+..+|+..+-.
T Consensus 80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~ 112 (283)
T COG1072 80 QRPFIIGIAGSVAVGKSTTARILQALLSRWPES 112 (283)
T ss_pred CCCEEEEeccCccccHHHHHHHHHHHHhhCCCC
Confidence 345699999995 7999999999999988755
No 91
>PRK00784 cobyric acid synthase; Provisional
Probab=81.28 E-value=1.7 Score=44.20 Aligned_cols=29 Identities=41% Similarity=0.521 Sum_probs=25.9
Q ss_pred cEEEEecC---CChhhHHHHHHHHHHhcCCce
Q 015701 44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 44 ~vI~VTGT---~GKTTt~~ml~~iL~~~g~~~ 72 (402)
+.|.|||| .|||+++..|...|++.|+++
T Consensus 3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v 34 (488)
T PRK00784 3 KALMVQGTASDAGKSTLVAGLCRILARRGYRV 34 (488)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeE
Confidence 56888888 899999999999999999875
No 92
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=81.28 E-value=3.1 Score=34.17 Aligned_cols=40 Identities=15% Similarity=0.166 Sum_probs=29.7
Q ss_pred CChhhHHHHHHHHHHhcCCceeeeccCchhhhhhhhhhccCCCCCCCccEEEEEeCcc
Q 015701 52 NGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY 109 (402)
Q Consensus 52 ~GKTTt~~ml~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~ 109 (402)
.|||+++.-+...|++.|.++...-. ...+|+.++|..++
T Consensus 10 ~Gkt~~~~~l~~~l~~~~~~v~~~kp------------------~~~~d~vliEGaGg 49 (134)
T cd03109 10 IGKTVATAILARALKEKGYRVAPLKP------------------VQTYDFVLVEGAGG 49 (134)
T ss_pred cCHHHHHHHHHHHHHHCCCeEEEEec------------------CCCCCEEEEECCCc
Confidence 79999999999999999988732111 11268899997643
No 93
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=81.16 E-value=1.5 Score=40.57 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.5
Q ss_pred ecCCChhhHHHHHHHHHHhcCCcee
Q 015701 49 TGTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 49 TGT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
-|-.|||||+.-|+..|...|+++.
T Consensus 8 KGGVGKTT~~~nLA~~La~~g~rVL 32 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAKLGKRVL 32 (268)
T ss_pred CCcCcHHHHHHHHHHHHHhCCCeEE
Confidence 5788999999999999999999874
No 94
>PRK07667 uridine kinase; Provisional
Probab=80.98 E-value=3.3 Score=36.38 Aligned_cols=31 Identities=29% Similarity=0.408 Sum_probs=26.1
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
+..+|+|+|- .||||++..|...|...|..+
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~ 48 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPF 48 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcE
Confidence 3479999996 589999999999999877654
No 95
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=80.91 E-value=2.2 Score=37.01 Aligned_cols=28 Identities=25% Similarity=0.463 Sum_probs=23.0
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 45 vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
+|+|+|. .||||.+..|...|...|..+
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~ 30 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGP 30 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 4788886 589999999999998777554
No 96
>PRK14974 cell division protein FtsY; Provisional
Probab=80.81 E-value=2.7 Score=40.49 Aligned_cols=33 Identities=21% Similarity=0.409 Sum_probs=27.6
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCceee
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
+..+|.++|.+ |||||+..+++.|...|.++.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~l 173 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVI 173 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 34689999976 6999999999999999887743
No 97
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=80.51 E-value=1.7 Score=40.36 Aligned_cols=25 Identities=28% Similarity=0.330 Sum_probs=22.4
Q ss_pred ecCCChhhHHHHHHHHHHhcCCcee
Q 015701 49 TGTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 49 TGT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
-|-.||||++.-|++.|...|+++.
T Consensus 8 KGGvGKTT~a~nLA~~la~~G~rvl 32 (267)
T cd02032 8 KGGIGKSTTSSNLSVALAKRGKKVL 32 (267)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 4677999999999999999999874
No 98
>PRK06696 uridine kinase; Validated
Probab=80.40 E-value=3 Score=37.58 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=27.4
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHHHhcCCcee
Q 015701 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 41 ~~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
....+|+|+|- .||||++..|+..|...|..+.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~ 54 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVI 54 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 35679999985 6899999999999988776553
No 99
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=80.12 E-value=3.1 Score=35.96 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=29.3
Q ss_pred CCcEEEEec--CCChhhHHHHHHHHHHhcCCceeeecc
Q 015701 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (402)
Q Consensus 42 ~~~vI~VTG--T~GKTTt~~ml~~iL~~~g~~~~~~g~ 77 (402)
..++++|+| -.||||...-|...|...|+++++.-+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~ 42 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 567999999 468999999999999988988754433
No 100
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=79.57 E-value=2.6 Score=35.65 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=25.6
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCceeeec
Q 015701 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (402)
Q Consensus 45 vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~~~g 76 (402)
+|+|+|. .||||++..|...|+..|+++.+.-
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK 34 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIK 34 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4667774 5899999999999999999885543
No 101
>PRK11670 antiporter inner membrane protein; Provisional
Probab=79.50 E-value=2.7 Score=41.14 Aligned_cols=31 Identities=29% Similarity=0.309 Sum_probs=27.3
Q ss_pred CcEEEEe---cCCChhhHHHHHHHHHHhcCCcee
Q 015701 43 IKILAVT---GTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 43 ~~vI~VT---GT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
.++|+|+ |-.|||||+.-|+..|.+.|.++.
T Consensus 107 ~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVl 140 (369)
T PRK11670 107 KNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVG 140 (369)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 4788997 667899999999999999999884
No 102
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=78.71 E-value=3.4 Score=38.57 Aligned_cols=32 Identities=22% Similarity=0.417 Sum_probs=26.2
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCcee
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~ 73 (402)
+.++|.++|.+ |||||+.-|+..|...|.++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~ 104 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVL 104 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence 45688888764 799999999999988887764
No 103
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=78.70 E-value=2.9 Score=36.77 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=25.8
Q ss_pred cEEEEecC---CChhhHHHHHHHHHHhcCCcee
Q 015701 44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 44 ~vI~VTGT---~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
+.|-|||| .|||+++.-|.+.|++.|.+++
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~ 33 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALRRRGIKVG 33 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEE
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhCCCceE
Confidence 35778888 6999999999999999998874
No 104
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=78.55 E-value=4.6 Score=37.19 Aligned_cols=122 Identities=20% Similarity=0.299 Sum_probs=61.4
Q ss_pred HHHHhhCC--CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCceee----------ecc-Cchhhhhhhhh--------h
Q 015701 33 DFAAQVIP--RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV----------GGN-LGNPLSEAAFH--------C 89 (402)
Q Consensus 33 ~~~~~~~~--~~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~~----------~g~-~g~~~~~~~~~--------~ 89 (402)
+++.++++ .+..+|||||+- ||||...-|...|.+.|.+++. +|. +|..+-...+. .
T Consensus 17 ~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS 96 (266)
T PF03308_consen 17 ELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRS 96 (266)
T ss_dssp HHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEE
T ss_pred HHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEee
Confidence 44444432 356799999985 6999999999999999988742 222 22211111000 0
Q ss_pred ccCC----------------CCCCCccEEEEEeCc-ccccCCCc-cccccEEEEecCCcchhcCCCCHHHHHHHHHHhcc
Q 015701 90 IALP----------------SSKPKFQVAVVEVSS-YQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS 151 (402)
Q Consensus 90 ~~~~----------------~~~~~~~~~V~E~~~-~~l~~~~~-~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~ 151 (402)
..+. .....+|+.++|+-+ |+-+..-. ..+.-+.+++.=.-|-+.. .|++++.
T Consensus 97 ~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg~GD~iQ~---------~KaGimE 167 (266)
T PF03308_consen 97 MATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVPGLGDEIQA---------IKAGIME 167 (266)
T ss_dssp E---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESSTCCCCCT---------B-TTHHH
T ss_pred cCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCCCccHHHH---------Hhhhhhh
Confidence 0000 012357899999874 65442111 1344555666655565543 3455554
Q ss_pred ccCCCeEEEEeCCCh
Q 015701 152 HMVNTKLGLLPFGNQ 166 (402)
Q Consensus 152 ~~~~~~~~v~n~dd~ 166 (402)
- ...+|+|..|.
T Consensus 168 i---aDi~vVNKaD~ 179 (266)
T PF03308_consen 168 I---ADIFVVNKADR 179 (266)
T ss_dssp H----SEEEEE--SH
T ss_pred h---ccEEEEeCCCh
Confidence 2 46889999774
No 105
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=78.51 E-value=3.6 Score=39.37 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=26.2
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCceee
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
+..+|++.|.+ |||||+..|+..|...|.++.+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~L 147 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLL 147 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEE
Confidence 34677777765 6999999999999988877643
No 106
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=78.35 E-value=2.3 Score=37.61 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=20.6
Q ss_pred EEEecCCChhhHHHHHHHHHHhcCCceee
Q 015701 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 46 I~VTGT~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
||.|| .|||||..=|++-+...|.++.+
T Consensus 7 vGptG-vGKTTt~aKLAa~~~~~~~~v~l 34 (196)
T PF00448_consen 7 VGPTG-VGKTTTIAKLAARLKLKGKKVAL 34 (196)
T ss_dssp EESTT-SSHHHHHHHHHHHHHHTT--EEE
T ss_pred ECCCC-CchHhHHHHHHHHHhhcccccee
Confidence 44444 48999999999999988888743
No 107
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=78.30 E-value=3 Score=32.23 Aligned_cols=47 Identities=15% Similarity=0.290 Sum_probs=33.9
Q ss_pred EEEEecCCChhhHHHHHHHHHHhcCCceeeeccCchhhhhhhhhhccCCCCCCCccEEEEEeCcc
Q 015701 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY 109 (402)
Q Consensus 45 vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~ 109 (402)
+.+--|..||||++..++..|.+.|.++..... ++.+++.|+.++.+
T Consensus 4 ~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~------------------d~~~d~viiD~p~~ 50 (104)
T cd02042 4 VANQKGGVGKTTTAVNLAAALARRGKRVLLIDL------------------DPQYDYIIIDTPPS 50 (104)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeC------------------CCCCCEEEEeCcCC
Confidence 445567899999999999999988877633221 22267788888843
No 108
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=78.21 E-value=2.2 Score=40.21 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=22.5
Q ss_pred ecCCChhhHHHHHHHHHHhcCCcee
Q 015701 49 TGTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 49 TGT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
-|-.|||||+.-|++.|...|+++.
T Consensus 8 KGGVGKTTta~nLA~~La~~G~rVL 32 (290)
T CHL00072 8 KGGIGKSTTSCNISIALARRGKKVL 32 (290)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 4678999999999999999999874
No 109
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=78.16 E-value=2.9 Score=38.22 Aligned_cols=30 Identities=27% Similarity=0.496 Sum_probs=24.7
Q ss_pred cEEEEec---CCChhhHHHHHHHHHHhcCCcee
Q 015701 44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 44 ~vI~VTG---T~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
++|+|++ -.||||++..|+..|...|.++.
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vl 34 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVV 34 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEE
Confidence 4666654 67899999999999999888763
No 110
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=78.09 E-value=3.2 Score=37.63 Aligned_cols=30 Identities=30% Similarity=0.237 Sum_probs=25.6
Q ss_pred EEEEecC---CChhhHHHHHHHHHHhcCCceee
Q 015701 45 ILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 45 vI~VTGT---~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
.|-|||| .|||+++..|.+.|++.|.++..
T Consensus 4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~ 36 (231)
T PRK12374 4 RFFITGTDTSVGKTVVSRALLQALASQGKTVAG 36 (231)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 4667766 89999999999999999998743
No 111
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=78.03 E-value=2.3 Score=39.48 Aligned_cols=30 Identities=33% Similarity=0.455 Sum_probs=24.7
Q ss_pred cEEEE--ecCCChhhHHHHHHHHHHhcCCcee
Q 015701 44 KILAV--TGTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 44 ~vI~V--TGT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
++|+| -|-.|||||+.-|++.|...|+++.
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVL 34 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVL 34 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 34455 4678999999999999999999874
No 112
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=77.96 E-value=4 Score=36.88 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=30.3
Q ss_pred ceeeHHHHHHhhCCCCCcEEEEecCC--ChhhHHHHHHHHHHhcC
Q 015701 27 RVMSELDFAAQVIPRSIKILAVTGTN--GKSTVVTFVGQMLNHLG 69 (402)
Q Consensus 27 ~~l~~~~~~~~~~~~~~~vI~VTGT~--GKTTt~~ml~~iL~~~g 69 (402)
+++.++.-+.+.. .+..+|+|+|-+ ||||.+..|...|...+
T Consensus 18 ~l~~~~~~~~~~~-~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 18 PLLRRLAALQAEP-QRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred HHHHHHHHHHhcC-CCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 3444444444433 456799999986 59999999999998765
No 113
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=77.80 E-value=2.7 Score=35.95 Aligned_cols=30 Identities=27% Similarity=0.446 Sum_probs=24.9
Q ss_pred EEEEecCCChhhHHHHHHHHHHhcCCceee
Q 015701 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 45 vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
+..-.|-.||||++..|+..|...|.++..
T Consensus 4 v~~~kgG~GKtt~a~~la~~l~~~g~~vll 33 (179)
T cd02036 4 VTSGKGGVGKTTTTANLGTALAQLGYKVVL 33 (179)
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 344467889999999999999999998743
No 114
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=77.20 E-value=5.7 Score=34.40 Aligned_cols=41 Identities=22% Similarity=0.207 Sum_probs=31.5
Q ss_pred eHHHHHHhhCCCCCcEEEEec--CCChhhHHHHHHHHHHhcCCc
Q 015701 30 SELDFAAQVIPRSIKILAVTG--TNGKSTVVTFVGQMLNHLGIE 71 (402)
Q Consensus 30 ~~~~~~~~~~~~~~~vI~VTG--T~GKTTt~~ml~~iL~~~g~~ 71 (402)
+..+...+.. +...+|.++| ..||||++..|...|...|..
T Consensus 6 ~~~~~~~~~~-~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~ 48 (184)
T TIGR00455 6 TKDERQALNG-HRGVVIWLTGLSGSGKSTIANALEKKLESKGYR 48 (184)
T ss_pred CHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCc
Confidence 3444444544 5678999999 889999999999999877754
No 115
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=77.03 E-value=2.2 Score=38.25 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=21.8
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhc
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQMLNHL 68 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL~~~ 68 (402)
..+|||+|- .||||++..|...|...
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 469999994 68999999999998643
No 116
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=76.98 E-value=6.3 Score=37.26 Aligned_cols=62 Identities=19% Similarity=0.157 Sum_probs=42.7
Q ss_pred CCcHHH-HHHHhcCCcee--eHHHHH--Hhh---C-CCCCcEEEEecC---CChhhHHHHHHHHHHhcCCceee
Q 015701 13 LKATGL-ACLLQSGKRVM--SELDFA--AQV---I-PRSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 13 ~~~p~~-~~a~~~~~~~l--~~~~~~--~~~---~-~~~~~vI~VTGT---~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
.++|++ +.|.+.|.++. +++..- ... . ..+.++|.|-|| .||=||+..|...++..|+++.+
T Consensus 109 s~dp~~~k~A~~~G~rl~dvR~p~~~l~~~~tG~~~k~~a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~f 182 (339)
T COG3367 109 SDDPEFVKLAERTGVRLDDVRKPPLDLEYLCTGMARKVDAKVVLVVGTDCAVGKRTTALELREAAREEGIKAGF 182 (339)
T ss_pred hcChHHHHHHHHcCCeeEeeccCccchhhhccCcccccCCcEEEEeccccccchhHHHHHHHHHHHHhCCccce
Confidence 577886 55566676433 222211 111 1 235679999999 59999999999999999998743
No 117
>PRK03846 adenylylsulfate kinase; Provisional
Probab=76.68 E-value=5.6 Score=35.02 Aligned_cols=41 Identities=27% Similarity=0.278 Sum_probs=31.3
Q ss_pred eHHHHHHhhCCCCCcEEEEec--CCChhhHHHHHHHHHHhcCCc
Q 015701 30 SELDFAAQVIPRSIKILAVTG--TNGKSTVVTFVGQMLNHLGIE 71 (402)
Q Consensus 30 ~~~~~~~~~~~~~~~vI~VTG--T~GKTTt~~ml~~iL~~~g~~ 71 (402)
+..+...+.. .+..+|+++| -.||||+...|...|...|..
T Consensus 12 ~~~~~~~~~~-~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~ 54 (198)
T PRK03846 12 TKAQREQLHG-HKGVVLWFTGLSGSGKSTVAGALEEALHELGVS 54 (198)
T ss_pred CHHHHHHhcC-CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCC
Confidence 4445555544 4668999999 789999999999998777654
No 118
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=76.66 E-value=0.55 Score=47.47 Aligned_cols=120 Identities=23% Similarity=0.232 Sum_probs=69.0
Q ss_pred cHHHHHHHhcCCc-eeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCce-eeeccCchhhhhhhhhhccC
Q 015701 15 ATGLACLLQSGKR-VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA-FVGGNLGNPLSEAAFHCIAL 92 (402)
Q Consensus 15 ~p~~~~a~~~~~~-~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~-~~~g~~g~~~~~~~~~~~~~ 92 (402)
+--...|.+.|.- ++...+. .......++|.|+||+||+++..+....+.....++ ...|+.|-.-....+.....
T Consensus 37 ~~~~~~a~~~Gavav~~~~~~--~~~~~~~~vi~V~~~~~~~~~~a~~~y~~ps~~l~vigvTGTNgKTt~t~~~~~~~~ 114 (475)
T COG0769 37 HDFIAGAIAPGAVAVVVEKDI--KLAEAGVPVIVVTGTNGKLTTLALAFYGLPSGKLKVIGVTGTNGKTTTTSLLAQILK 114 (475)
T ss_pred ccchHhHhhCCCEEEEecccc--cccccCCCEEEEcCcHHHHHHHHHHhccCcccCceEEEEcCCCcHHHHHHHHHHHHH
Confidence 4444556666533 4444443 222234569999999999999999999987754554 33354443322222211111
Q ss_pred CCCCCCccEEEEEeCcc---cccCCCccccccEEEEecCCcchhcCCCC
Q 015701 93 PSSKPKFQVAVVEVSSY---QMEIPNKYFCPTVSVVLNLTPDHLERHKT 138 (402)
Q Consensus 93 ~~~~~~~~~~V~E~~~~---~l~~~~~~~~p~i~iiTni~~dH~~~~~t 138 (402)
.....+.+...|..+. ..+ ......|+...++|+..|+++...+
T Consensus 115 -~~g~~~~~~gT~g~~~~~~~~~-~~~~tTP~~~~l~~~~~~~~d~~~e 161 (475)
T COG0769 115 -KLGKKTALIGTEGDELSPGILE-PTGLTTPEALDLQNLLRDLLDRGAE 161 (475)
T ss_pred -hcCCceEEEEEEeeeccCCccc-ccCCCCccHHHHHHHHHHHHHcCCc
Confidence 1233455566665532 222 1123678888889988888887653
No 119
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=76.08 E-value=4.3 Score=38.66 Aligned_cols=33 Identities=27% Similarity=0.556 Sum_probs=29.4
Q ss_pred CCcEEEEe----cCCChhhHHHHHHHHHHhcCCceee
Q 015701 42 SIKILAVT----GTNGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 42 ~~~vI~VT----GT~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
+.|||.|- |-.|||.++.+|...|++.|++++.
T Consensus 27 ~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~I 63 (311)
T TIGR00682 27 PVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGV 63 (311)
T ss_pred CCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEE
Confidence 67899984 9999999999999999999998843
No 120
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=75.86 E-value=3 Score=33.16 Aligned_cols=25 Identities=28% Similarity=0.579 Sum_probs=19.7
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 45 vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
+|+|+|. .||||++..|+.-| |+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~~~~ 27 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---GFPV 27 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCeE
Confidence 5778886 58999999999877 5554
No 121
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=75.82 E-value=4.6 Score=38.80 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=28.6
Q ss_pred CCCcEEEEec--CCChhhHHHHHHHHHHhcCCceee
Q 015701 41 RSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 41 ~~~~vI~VTG--T~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
++.++|.|+| ..||||++.-|+..|.+.|.++.+
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVll 64 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLL 64 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 4567888876 678999999999999999998753
No 122
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=75.08 E-value=2.7 Score=37.28 Aligned_cols=28 Identities=36% Similarity=0.605 Sum_probs=21.5
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcCCceee
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
+.+||+||. .||||++.+++. .|+.+..
T Consensus 2 ~~iIglTG~igsGKStva~~~~~----~G~~vid 31 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE----LGFPVID 31 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH----cCCeEEE
Confidence 468999997 789999887775 5666643
No 123
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=74.68 E-value=3.9 Score=36.86 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=19.7
Q ss_pred EEEEecCC--ChhhHHHHHHHHHHh
Q 015701 45 ILAVTGTN--GKSTVVTFVGQMLNH 67 (402)
Q Consensus 45 vI~VTGT~--GKTTt~~ml~~iL~~ 67 (402)
+|||+|.+ ||||++..|...|..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 47888875 799999999999975
No 124
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=74.36 E-value=3.2 Score=38.62 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=24.0
Q ss_pred EEEEe--cCCChhhHHHHHHHHHHhcCCcee
Q 015701 45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 45 vI~VT--GT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
+|+|. |-.||||++.-|+..|.+.|+++.
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~Vl 32 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVM 32 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEE
Confidence 34454 667899999999999999998874
No 125
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=74.14 E-value=3.3 Score=39.16 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.6
Q ss_pred ecCCChhhHHHHHHHHHHhcCCcee
Q 015701 49 TGTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 49 TGT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
-|-.|||||+..|++.|...|+++.
T Consensus 8 KGGvGKTT~a~nLA~~La~~g~rVL 32 (296)
T TIGR02016 8 KGGSGKSFTTTNLSHMMAEMGKRVL 32 (296)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4778999999999999999999874
No 126
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=74.12 E-value=3.4 Score=35.24 Aligned_cols=26 Identities=35% Similarity=0.326 Sum_probs=22.7
Q ss_pred EecCCChhhHHHHHHHHHHhcCCcee
Q 015701 48 VTGTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 48 VTGT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
--|-.||||++.-|+..|.+.|.++.
T Consensus 7 ~kgG~GKTt~a~~LA~~la~~g~~vl 32 (169)
T cd02037 7 GKGGVGKSTVAVNLALALAKLGYKVG 32 (169)
T ss_pred CCCcCChhHHHHHHHHHHHHcCCcEE
Confidence 34678999999999999999998874
No 127
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=73.92 E-value=3.6 Score=37.19 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=24.8
Q ss_pred cEEEEe---cCCChhhHHHHHHHHHHhcCCceee
Q 015701 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 44 ~vI~VT---GT~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
++|.+. |-.||||.+.+|++.|.+.|.+|.+
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~l 35 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAARGARVAL 35 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 455554 6678999999999999999987743
No 128
>PRK13236 nitrogenase reductase; Reviewed
Probab=73.27 E-value=3.4 Score=39.02 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=26.8
Q ss_pred CCcEEEEe--cCCChhhHHHHHHHHHHhcCCceee
Q 015701 42 SIKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 42 ~~~vI~VT--GT~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
++++|.|. |-.|||||+.-|++.|.+.|++|..
T Consensus 5 ~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLl 39 (296)
T PRK13236 5 NIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILI 39 (296)
T ss_pred CceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEE
Confidence 45666664 5678999999999999999999843
No 129
>CHL00175 minD septum-site determining protein; Validated
Probab=73.13 E-value=5.7 Score=37.04 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=26.9
Q ss_pred CCcEEEEec---CCChhhHHHHHHHHHHhcCCcee
Q 015701 42 SIKILAVTG---TNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 42 ~~~vI~VTG---T~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
..++|+|++ -.||||++.-|++.|.+.|.++.
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vl 48 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVA 48 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEE
Confidence 446888876 56899999999999999998874
No 130
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=72.34 E-value=6 Score=38.15 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=28.9
Q ss_pred CCcEEEE----ecCCChhhHHHHHHHHHHhcCCcee
Q 015701 42 SIKILAV----TGTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 42 ~~~vI~V----TGT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
+.|||.| .|-.|||-++.+|...|.+.|++++
T Consensus 55 pvPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~ 90 (338)
T PRK01906 55 GVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPG 90 (338)
T ss_pred CCCEEEECCccCCCCChHHHHHHHHHHHHHcCCceE
Confidence 5689988 6899999999999999999999874
No 131
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=72.28 E-value=5.1 Score=34.11 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=26.5
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
.-.|+|||. .||||.+.-|+..|+..|+++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv 36 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKV 36 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCcee
Confidence 346999997 579999999999999999887
No 132
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=71.92 E-value=2.7 Score=36.70 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=22.4
Q ss_pred CCCcEEEEecCCChh--hHHHHHHHHHHhcCCc
Q 015701 41 RSIKILAVTGTNGKS--TVVTFVGQMLNHLGIE 71 (402)
Q Consensus 41 ~~~~vI~VTGT~GKT--Tt~~ml~~iL~~~g~~ 71 (402)
.+-|+|+||||.|-+ ||+.....|+.+..++
T Consensus 3 aKhPiIavTGSSGAGTTTts~aFrKiF~~~~I~ 35 (289)
T COG3954 3 AKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNIH 35 (289)
T ss_pred CCCceEEEecCCCCCcccHHHHHHHHHHhcCcc
Confidence 466899999999764 4555666777776554
No 133
>PRK00889 adenylylsulfate kinase; Provisional
Probab=71.92 E-value=6.5 Score=33.71 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=26.3
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 41 ~~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
++..+|.++|. .||||++..|+..|...|..+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v 35 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPV 35 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 35678999995 579999999999998777554
No 134
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=71.80 E-value=4.7 Score=40.62 Aligned_cols=30 Identities=23% Similarity=0.352 Sum_probs=26.0
Q ss_pred CcEEEEecCC---ChhhHHHHHHHHHHhcCCce
Q 015701 43 IKILAVTGTN---GKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 43 ~~vI~VTGT~---GKTTt~~ml~~iL~~~g~~~ 72 (402)
++.|.||||. |||+++..|...|++.|+++
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V 35 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRV 35 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCc
Confidence 5678888875 59999999999999999876
No 135
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=71.77 E-value=3.6 Score=35.85 Aligned_cols=24 Identities=42% Similarity=0.711 Sum_probs=18.6
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 45 vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
+|||||. .||||++.++.. .|+.+
T Consensus 2 iIglTG~igsGKStv~~~l~~----~G~~v 27 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE----LGFPV 27 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH----TT-EE
T ss_pred EEEEECCCcCCHHHHHHHHHH----CCCCE
Confidence 6999997 689999888765 67665
No 136
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=71.74 E-value=2 Score=39.66 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=23.4
Q ss_pred cEEEE--ecCCChhhHHHHHHHHHHhcCCcee
Q 015701 44 KILAV--TGTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 44 ~vI~V--TGT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
++|+| -|-.|||||+.-|++.|...| ++.
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVL 33 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVL 33 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCC-EEE
Confidence 34444 477899999999999999999 773
No 137
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=71.71 E-value=5.8 Score=38.72 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=30.6
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCceeeecc
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGN 77 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~~~g~ 77 (402)
..++|+|+|. .||||...-|-..|++.|+++.+..+
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh 241 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKH 241 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 4689999994 68999999999999999999865554
No 138
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=71.69 E-value=6.2 Score=32.92 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=23.3
Q ss_pred cEEEEec---CCChhhHHHHHHHHHHhcCCce
Q 015701 44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 44 ~vI~VTG---T~GKTTt~~ml~~iL~~~g~~~ 72 (402)
++|+|+| ..||||++..++..|.+.|.++
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~V 32 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKV 32 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-E
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCe
Confidence 3566665 6799999999999999998765
No 139
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=71.64 E-value=4.9 Score=36.95 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=24.2
Q ss_pred cEEEEecCCChhhHHHHHHHHHH-hcCCcee
Q 015701 44 KILAVTGTNGKSTVVTFVGQMLN-HLGIEAF 73 (402)
Q Consensus 44 ~vI~VTGT~GKTTt~~ml~~iL~-~~g~~~~ 73 (402)
.+...-|-.|||||+-.|+..|. ..|.++.
T Consensus 6 ~v~n~KGGvGKTT~a~nLa~~La~~~~~kVL 36 (259)
T COG1192 6 AVANQKGGVGKTTTAVNLAAALAKRGGKKVL 36 (259)
T ss_pred EEEecCCCccHHHHHHHHHHHHHHhcCCcEE
Confidence 35556688899999999999999 5567774
No 140
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=71.49 E-value=6.9 Score=38.94 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=27.0
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcCCceee
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
..+|.++|- .|||||+.-|+..|+..|.++.+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~l 133 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCL 133 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 468888885 57999999999999999988754
No 141
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=71.39 E-value=3.8 Score=37.53 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=19.9
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
.+|||||. .||||++.++..- .|+.+
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~---~G~~v 29 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREE---HHIEV 29 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH---cCCeE
Confidence 58999997 7899998887743 36554
No 142
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=71.22 E-value=5.5 Score=35.68 Aligned_cols=28 Identities=39% Similarity=0.468 Sum_probs=23.2
Q ss_pred EEEecC---CChhhHHHHHHHHHHhcCCcee
Q 015701 46 LAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 46 I~VTGT---~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
|.|||| .|||+++..|.+.|++.|.++.
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~ 32 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVA 32 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceE
Confidence 345544 7999999999999999999874
No 143
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=71.03 E-value=4.6 Score=36.74 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=22.4
Q ss_pred EecCCChhhHHHHHHHHHHhcCCcee
Q 015701 48 VTGTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 48 VTGT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
--|-.||||++.-|+..|...|.++.
T Consensus 8 ~KGGvGKTt~a~~LA~~la~~g~~Vl 33 (251)
T TIGR01969 8 GKGGTGKTTITANLGVALAKLGKKVL 33 (251)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 34678999999999999999998774
No 144
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=70.55 E-value=4.2 Score=37.66 Aligned_cols=30 Identities=33% Similarity=0.309 Sum_probs=26.6
Q ss_pred cEEEEe---cCCChhhHHHHHHHHHHhcCCcee
Q 015701 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 44 ~vI~VT---GT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
.+|.|+ |-.|||||+.+|+..|...|.+++
T Consensus 48 ~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vg 80 (300)
T KOG3022|consen 48 HIILVLSGKGGVGKSTVTVNLALALASEGKKVG 80 (300)
T ss_pred eEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEE
Confidence 577776 889999999999999999998874
No 145
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=70.51 E-value=5.4 Score=36.11 Aligned_cols=28 Identities=29% Similarity=0.532 Sum_probs=20.5
Q ss_pred EEEEec--CCChhhHHHH-HHHHHHhcCCce
Q 015701 45 ILAVTG--TNGKSTVVTF-VGQMLNHLGIEA 72 (402)
Q Consensus 45 vI~VTG--T~GKTTt~~m-l~~iL~~~g~~~ 72 (402)
.|+||| -.||||.+++ +..+++..|+.+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~V 32 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNV 32 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceE
Confidence 578875 6899999999 666666555544
No 146
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=70.13 E-value=6.8 Score=37.58 Aligned_cols=34 Identities=21% Similarity=0.514 Sum_probs=30.1
Q ss_pred CCCcEEEE----ecCCChhhHHHHHHHHHHhcCCceee
Q 015701 41 RSIKILAV----TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 41 ~~~~vI~V----TGT~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
-+.|||.| +|-.|||-++.+|...|++.|+++.+
T Consensus 33 ~~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~I 70 (326)
T PF02606_consen 33 LPVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAI 70 (326)
T ss_pred CCCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEE
Confidence 36789988 68999999999999999999998743
No 147
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=69.71 E-value=6.6 Score=41.02 Aligned_cols=36 Identities=28% Similarity=0.319 Sum_probs=31.1
Q ss_pred CCcEEEEec--CCChhhHHHHHHHHHHhcCCceeeecc
Q 015701 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (402)
Q Consensus 42 ~~~vI~VTG--T~GKTTt~~ml~~iL~~~g~~~~~~g~ 77 (402)
.+++|+|+| -.||||...-|-..|++.|+++++.-+
T Consensus 9 ~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh 46 (597)
T PRK14491 9 SIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKH 46 (597)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEc
Confidence 468999999 679999999999999999999866554
No 148
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=68.23 E-value=6.4 Score=31.50 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=21.7
Q ss_pred ecCCChhhHHHHHHHHHHhcCCcee
Q 015701 49 TGTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 49 TGT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
-|..||||++..+++.|.+.|.++.
T Consensus 7 kgG~GKTt~a~~la~~l~~~g~~V~ 31 (116)
T cd02034 7 KGGVGKTTIAALLARYLAEKGKPVL 31 (116)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 3678999999999999999888774
No 149
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=68.23 E-value=8.5 Score=35.76 Aligned_cols=32 Identities=34% Similarity=0.430 Sum_probs=27.4
Q ss_pred CCcEEEEec---CCChhhHHHHHHHHHHhcCCcee
Q 015701 42 SIKILAVTG---TNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 42 ~~~vI~VTG---T~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
..++|+||. -.|||||+..|+..|.+.|.++.
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVl 90 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVL 90 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEE
Confidence 467888874 56899999999999999999984
No 150
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=67.40 E-value=5.9 Score=39.87 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.2
Q ss_pred ecC-CChhhHHHHHHHHHHhcCCce
Q 015701 49 TGT-NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 49 TGT-~GKTTt~~ml~~iL~~~g~~~ 72 (402)
|+| .|||+++.-|...|++.|+++
T Consensus 7 T~t~vGKT~vt~~L~~~L~~~G~~V 31 (449)
T TIGR00379 7 TSSGVGKTTISTGIMKALSRRKLRV 31 (449)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCce
Confidence 444 799999999999999999886
No 151
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=67.38 E-value=5.3 Score=36.57 Aligned_cols=30 Identities=33% Similarity=0.412 Sum_probs=23.3
Q ss_pred EEEEe---cCCChhhHHHHHHHHHHhcCCceee
Q 015701 45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 45 vI~VT---GT~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
+|.|+ |-.|||||+.-|+-.|...|++|++
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~ 34 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGL 34 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEE
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 45554 6789999999999999999999853
No 152
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=66.33 E-value=10 Score=32.87 Aligned_cols=30 Identities=23% Similarity=0.511 Sum_probs=24.8
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCceee
Q 015701 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 45 vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
+|+|.|. .||||.+..|+..|...|..+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~ 33 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVL 33 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 5777775 58999999999999988887743
No 153
>PRK10818 cell division inhibitor MinD; Provisional
Probab=66.19 E-value=6.7 Score=36.26 Aligned_cols=29 Identities=31% Similarity=0.439 Sum_probs=24.1
Q ss_pred cEEEEe---cCCChhhHHHHHHHHHHhcCCce
Q 015701 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 44 ~vI~VT---GT~GKTTt~~ml~~iL~~~g~~~ 72 (402)
++|+|+ |-.||||++..|++.|.+.|.++
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~v 34 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKT 34 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeE
Confidence 456665 56789999999999999988776
No 154
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=66.14 E-value=9 Score=36.59 Aligned_cols=32 Identities=25% Similarity=0.521 Sum_probs=28.8
Q ss_pred CCcEEEE----ecCCChhhHHHHHHHHHHhcCCcee
Q 015701 42 SIKILAV----TGTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 42 ~~~vI~V----TGT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
+.|||.| .|-+|||-++-+|+.-|++.|.+++
T Consensus 46 pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~g 81 (336)
T COG1663 46 PVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVG 81 (336)
T ss_pred CCCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeE
Confidence 4788886 6999999999999999999999984
No 155
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=65.40 E-value=5.6 Score=39.14 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=17.7
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHh
Q 015701 44 KILAVTGT--NGKSTVVTFVGQMLNH 67 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL~~ 67 (402)
.+|.+.|. .|||||+.-|++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~ 200 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGI 200 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45555554 4799999999988874
No 156
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=65.29 E-value=5.9 Score=40.17 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=22.7
Q ss_pred EEecC---CChhhHHHHHHHHHHhcCCcee
Q 015701 47 AVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 47 ~VTGT---~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
-|||| .|||.++..|...|++.|+++.
T Consensus 2 ~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~ 31 (475)
T TIGR00313 2 MVVGTTSSAGKSTLTAGLCRILARRGYRVA 31 (475)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 34544 8999999999999999998863
No 157
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=65.03 E-value=11 Score=35.62 Aligned_cols=34 Identities=32% Similarity=0.487 Sum_probs=28.9
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHHHhcCCceee
Q 015701 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 41 ~~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
...++|+|+|. .||||++..+...|...|.++..
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~ 67 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAV 67 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46789999996 57999999999999999988743
No 158
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=64.62 E-value=13 Score=31.60 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=25.2
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHHhcCCcee
Q 015701 44 KILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 44 ~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~ 73 (402)
.+|-+||.. ||||.+..|..-|.+.|..+.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~ 34 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVY 34 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 578888864 799999999999999998773
No 159
>PRK08233 hypothetical protein; Provisional
Probab=64.60 E-value=6.4 Score=33.74 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=20.1
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHH
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQMLN 66 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL~ 66 (402)
..+|+|+|. .||||.+..|+..|.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 468999987 479999999998774
No 160
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=64.56 E-value=5 Score=35.14 Aligned_cols=21 Identities=29% Similarity=0.722 Sum_probs=17.7
Q ss_pred EEEEec--CCChhhHHHHHHHHH
Q 015701 45 ILAVTG--TNGKSTVVTFVGQML 65 (402)
Q Consensus 45 vI~VTG--T~GKTTt~~ml~~iL 65 (402)
+|+|+| ..||||.+..|...|
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 488888 468999999998876
No 161
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=64.54 E-value=9.8 Score=40.85 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=28.8
Q ss_pred CCCcEEEEecCC---ChhhHHHHHHHHHHhcCCcee
Q 015701 41 RSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 41 ~~~~vI~VTGT~---GKTTt~~ml~~iL~~~g~~~~ 73 (402)
+..++|.||++. ||||++.-|+..|...|.++.
T Consensus 529 ~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVL 564 (726)
T PRK09841 529 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVL 564 (726)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 356899999976 999999999999999998873
No 162
>PRK05480 uridine/cytidine kinase; Provisional
Probab=63.88 E-value=8.2 Score=34.19 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=21.6
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT--~GKTTt~~ml~~iL 65 (402)
.+..+|+|+|- .||||++..|...|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999997 58999999999887
No 163
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=63.59 E-value=17 Score=33.23 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=39.2
Q ss_pred EEEEec----CCChhhHHHHHHHHHHhcCCceee---eccCchhhhhhhhhhccCCCCCCCccEEEEEeC-cccccCC
Q 015701 45 ILAVTG----TNGKSTVVTFVGQMLNHLGIEAFV---GGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVS-SYQMEIP 114 (402)
Q Consensus 45 vI~VTG----T~GKTTt~~ml~~iL~~~g~~~~~---~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~-~~~l~~~ 114 (402)
-|.||| +-||+.|++-|..+|+..|+++.. -+.++.-... + .| -+.-+++|.|=| +-++|..
T Consensus 2 yi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNvd~Gt--m----sP--~~HGEvfVt~DG~E~DlDlG 71 (255)
T cd03113 2 YIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGT--M----SP--YQHGEVFVTDDGAETDLDLG 71 (255)
T ss_pred EEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeecccccCCCCC--C----CC--ccceeEEEccCCCccccccc
Confidence 466777 569999999999999999999832 3333221110 0 01 123466888877 4456644
No 164
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=63.47 E-value=11 Score=35.54 Aligned_cols=62 Identities=24% Similarity=0.251 Sum_probs=37.8
Q ss_pred CCcHHHHHH-HhcCCceee--HHH----HH-HhhCCCCCcEEEEecC---CChhhHHHHHHHHHHhcCCceee
Q 015701 13 LKATGLACL-LQSGKRVMS--ELD----FA-AQVIPRSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 13 ~~~p~~~~a-~~~~~~~l~--~~~----~~-~~~~~~~~~vI~VTGT---~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
.++|++..+ .++|..+.. ++. .. .+...-+.++|++-|| .||-||+.+|...|++.|+++..
T Consensus 74 ~ddpel~~~A~~~g~~i~DvR~p~~~~~~~~g~~~~~~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~f 146 (301)
T PF07755_consen 74 SDDPELAAAAKKNGVRIIDVRKPPKDLPVASGRIREVKAKRVLTVGTDCAVGKMTTALELRRALRERGINAGF 146 (301)
T ss_dssp CCHHHHHCCHHCCT--EEETTS--SS-----SGGGG-SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEE
T ss_pred ccCHHHHHHHHHcCCeEeeccCCCcccccccCccccCCCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceE
Confidence 567777544 555666552 221 11 0111126789999998 69999999999999999999743
No 165
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=63.34 E-value=11 Score=32.85 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=25.9
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
.+.|+|.|. .||||.+.+|+.-|...|+++
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v 34 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDV 34 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 367899986 589999999999999988776
No 166
>PTZ00301 uridine kinase; Provisional
Probab=62.45 E-value=8.7 Score=34.33 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=19.7
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHH
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQMLN 66 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL~ 66 (402)
..+|||+|- .||||.+..|..-|.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 479999995 689999998876664
No 167
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=61.17 E-value=10 Score=29.57 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=23.0
Q ss_pred EEecCCChhhHHHHHHHHHHhc-CCceee
Q 015701 47 AVTGTNGKSTVVTFVGQMLNHL-GIEAFV 74 (402)
Q Consensus 47 ~VTGT~GKTTt~~ml~~iL~~~-g~~~~~ 74 (402)
+--|..||||++.-|+..|.+. |.++.+
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l 34 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLL 34 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEE
Confidence 3346678999999999999998 888743
No 168
>PLN02796 D-glycerate 3-kinase
Probab=61.01 E-value=12 Score=36.03 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=24.5
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHHhcCCce
Q 015701 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 43 ~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~ 72 (402)
.-+|+|+|.+ ||||++..|..+|...|..+
T Consensus 100 pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~ 131 (347)
T PLN02796 100 PLVIGISAPQGCGKTTLVFALVYLFNATGRRA 131 (347)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHhcccCCce
Confidence 3579999975 79999999999998766544
No 169
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=60.10 E-value=6.7 Score=33.16 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=16.4
Q ss_pred EEEEecCCChhhHHHHHHHHHHh
Q 015701 45 ILAVTGTNGKSTVVTFVGQMLNH 67 (402)
Q Consensus 45 vI~VTGT~GKTTt~~ml~~iL~~ 67 (402)
++||+| .||||+..+|.+-|..
T Consensus 17 vmGvsG-sGKSTigk~L~~~l~~ 38 (191)
T KOG3354|consen 17 VMGVSG-SGKSTIGKALSEELGL 38 (191)
T ss_pred EEecCC-CChhhHHHHHHHHhCC
Confidence 444554 3899999999988863
No 170
>PRK07429 phosphoribulokinase; Provisional
Probab=60.00 E-value=9.2 Score=36.71 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=22.6
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhc
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQMLNHL 68 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL~~~ 68 (402)
+..+|+|+|. +||||++..|+.+|...
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~~~ 35 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLGEE 35 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhccC
Confidence 4569999995 57999999999998644
No 171
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=59.72 E-value=7.2 Score=32.97 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=14.5
Q ss_pred EEEecC--CChhhHHHHHHHH
Q 015701 46 LAVTGT--NGKSTVVTFVGQM 64 (402)
Q Consensus 46 I~VTGT--~GKTTt~~ml~~i 64 (402)
|+|||+ .||||++..|+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 788996 5899999988866
No 172
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=59.36 E-value=7.8 Score=34.23 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=21.4
Q ss_pred CcEEEEec--CCChhhHHHHHHHHHHhc
Q 015701 43 IKILAVTG--TNGKSTVVTFVGQMLNHL 68 (402)
Q Consensus 43 ~~vI~VTG--T~GKTTt~~ml~~iL~~~ 68 (402)
.-+|||+| ..||||.+..++.+|..+
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~~~ 31 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRFFPGC 31 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHHccCC
Confidence 35899999 479999999999988643
No 173
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=59.32 E-value=7.9 Score=33.91 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=18.0
Q ss_pred EEEEecC--CChhhHHHHHHHHH
Q 015701 45 ILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 45 vI~VTGT--~GKTTt~~ml~~iL 65 (402)
+|+|+|- .||||++.+|..+|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 4788885 57999999999998
No 174
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=59.18 E-value=15 Score=36.28 Aligned_cols=108 Identities=14% Similarity=0.118 Sum_probs=58.2
Q ss_pred CcEEEEec--CCChhhHHHHHHHHHHhcCCceeeec-cCchhhhhhhhhhccCCCCCCCccEEEEEeCcc--cccC----
Q 015701 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG-NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY--QMEI---- 113 (402)
Q Consensus 43 ~~vI~VTG--T~GKTTt~~ml~~iL~~~g~~~~~~g-~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~--~l~~---- 113 (402)
..+|-..| -.|||||+.=|+..|+..|+++.+.+ ..-.|.....+.-+ ..+.++-++..+.+ ..+.
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~L-----a~q~~v~~f~~~~~~~Pv~Iak~a 174 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQL-----AEQVGVPFFGSGTEKDPVEIAKAA 174 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHH-----HHHcCCceecCCCCCCHHHHHHHH
Confidence 34666666 36899999999999999999985433 34334333322211 11122223332211 1110
Q ss_pred CCc--cccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEE
Q 015701 114 PNK--YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160 (402)
Q Consensus 114 ~~~--~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v 160 (402)
... .-..|+.||=.-|..|+| ++..++-.++-+.++|+-++.
T Consensus 175 l~~ak~~~~DvvIvDTAGRl~id-----e~Lm~El~~Ik~~~~P~E~ll 218 (451)
T COG0541 175 LEKAKEEGYDVVIVDTAGRLHID-----EELMDELKEIKEVINPDETLL 218 (451)
T ss_pred HHHHHHcCCCEEEEeCCCccccc-----HHHHHHHHHHHhhcCCCeEEE
Confidence 000 012488898888888886 344555444444445554433
No 175
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=59.14 E-value=7.8 Score=38.48 Aligned_cols=78 Identities=14% Similarity=0.095 Sum_probs=46.5
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHHHhcCCceeeeccCchhhhhhhhhhccCCCCCCCccEEEEEeCcccccCCCccc
Q 015701 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYF 118 (402)
Q Consensus 41 ~~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~ 118 (402)
.+-.=|.|+|. .||||.+..++..+..+|..+.+ +..|=.... .+.=+||+=+|.+.......-...
T Consensus 261 eraeGILIAG~PGaGKsTFaqAlAefy~~~GkiVKT---mEsPRDl~v--------~~eITQYs~l~g~me~t~DiLLLv 329 (604)
T COG1855 261 ERAEGILIAGAPGAGKSTFAQALAEFYASQGKIVKT---MESPRDLQV--------SPEITQYSPLEGDMEKTADILLLV 329 (604)
T ss_pred hhhcceEEecCCCCChhHHHHHHHHHHHhcCcEEee---ccCcccccC--------ChhhhhcccccCchhhhccEEEEe
Confidence 34456888887 57999999999999999987743 333321111 011234555665543322222246
Q ss_pred cccEEEEecCC
Q 015701 119 CPTVSVVLNLT 129 (402)
Q Consensus 119 ~p~i~iiTni~ 129 (402)
+||+.|.-.+-
T Consensus 330 RPDYTIyDEmR 340 (604)
T COG1855 330 RPDYTIYDEMR 340 (604)
T ss_pred cCCceehhhhh
Confidence 88888765543
No 176
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=58.79 E-value=13 Score=26.39 Aligned_cols=21 Identities=48% Similarity=0.683 Sum_probs=17.5
Q ss_pred EEEEecC--CChhhHHHHHHHHH
Q 015701 45 ILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 45 vI~VTGT--~GKTTt~~ml~~iL 65 (402)
+|+|+|. .||||.+..|...|
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 3677776 47999999999999
No 177
>PRK07933 thymidylate kinase; Validated
Probab=58.08 E-value=17 Score=32.53 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=24.4
Q ss_pred EEEEec--CCChhhHHHHHHHHHHhcCCcee
Q 015701 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 45 vI~VTG--T~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
.|+|-| -.||||.+.+|+.-|...|..+.
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~ 32 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVA 32 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 466666 36899999999999999998874
No 178
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=57.96 E-value=7.3 Score=36.37 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=20.3
Q ss_pred EEEEecCC--ChhhHHHHHHHHHHhcC
Q 015701 45 ILAVTGTN--GKSTVVTFVGQMLNHLG 69 (402)
Q Consensus 45 vI~VTGT~--GKTTt~~ml~~iL~~~g 69 (402)
+|+|+|.+ ||||.+.+|..+|...+
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~ 27 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDL 27 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCc
Confidence 47888875 79999999999996544
No 179
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=57.89 E-value=12 Score=31.98 Aligned_cols=30 Identities=27% Similarity=0.593 Sum_probs=22.5
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCceeeecc
Q 015701 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGN 77 (402)
Q Consensus 45 vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~~~g~ 77 (402)
+|.|+|- +||||++.+|+..| |+++..+|.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~vsaG~ 33 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKLVSAGT 33 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCceeeccH
Confidence 4677774 68999999999655 777766665
No 180
>PRK11519 tyrosine kinase; Provisional
Probab=57.65 E-value=20 Score=38.51 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=28.5
Q ss_pred CCCcEEEEec---CCChhhHHHHHHHHHHhcCCcee
Q 015701 41 RSIKILAVTG---TNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 41 ~~~~vI~VTG---T~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
++.++|.||+ ..||||++.-|+..|...|.++.
T Consensus 524 ~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvL 559 (719)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVL 559 (719)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEE
Confidence 3557999998 56999999999999999998873
No 181
>PLN02422 dephospho-CoA kinase
Probab=57.64 E-value=10 Score=34.47 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=21.1
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCceee
Q 015701 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
++|+|||. .||||++.++.. .|+.+.-
T Consensus 2 ~~igltG~igsGKstv~~~l~~----~g~~~id 30 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKS----SGIPVVD 30 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCCeEEe
Confidence 57999996 689999998873 5776643
No 182
>PRK04040 adenylate kinase; Provisional
Probab=57.63 E-value=13 Score=32.62 Aligned_cols=28 Identities=32% Similarity=0.388 Sum_probs=21.8
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
++|+|||. .||||.+..|..-|. .++.+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~-~~~~~ 32 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK-EDYKI 32 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc-cCCeE
Confidence 57888987 589999999998885 24444
No 183
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=57.61 E-value=13 Score=33.18 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=26.0
Q ss_pred CcEEEEec--CCChhhHHHHHHHHHHhcCCce
Q 015701 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 43 ~~vI~VTG--T~GKTTt~~ml~~iL~~~g~~~ 72 (402)
++.|-+|| ..||||-+.-|+.+|++.+.++
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~v 32 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRV 32 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhc
Confidence 46788888 6899999999999999988765
No 184
>PRK00698 tmk thymidylate kinase; Validated
Probab=57.57 E-value=17 Score=31.69 Aligned_cols=30 Identities=23% Similarity=0.467 Sum_probs=24.9
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
..+|.|.|- .||||.+..|+.-|...|..+
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~ 34 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDV 34 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCce
Confidence 367888885 689999999999998877554
No 185
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=57.53 E-value=6 Score=33.16 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=17.0
Q ss_pred EEecCCChhhHHHHHHHHHHhc
Q 015701 47 AVTGTNGKSTVVTFVGQMLNHL 68 (402)
Q Consensus 47 ~VTGT~GKTTt~~ml~~iL~~~ 68 (402)
||+| +||||+..+|++-|...
T Consensus 2 GVsG-~GKStvg~~lA~~lg~~ 22 (161)
T COG3265 2 GVSG-SGKSTVGSALAERLGAK 22 (161)
T ss_pred CCCc-cCHHHHHHHHHHHcCCc
Confidence 5666 59999999999888644
No 186
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=57.20 E-value=12 Score=32.29 Aligned_cols=26 Identities=42% Similarity=0.677 Sum_probs=20.1
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCceee
Q 015701 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 45 vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
+|+|||. .||||++.++.. .|+.+..
T Consensus 1 ii~itG~~gsGKst~~~~l~~----~g~~~i~ 28 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE----LGIPVID 28 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH----CCCCEEe
Confidence 4899986 689999999887 4766543
No 187
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=57.03 E-value=52 Score=32.80 Aligned_cols=94 Identities=14% Similarity=0.169 Sum_probs=59.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHccc---CCCcEEEE--EcCCCCcCCCCCCcchHhhhhcccc--cc--EEE-EeCCChHH
Q 015701 267 QGVTWVDDSKATNLEATCTGLMDL---KGHKCVIL--LGGQAKVLNGQESNGFEKLIEPLNH--HR--CVI-TFGYSGVL 336 (402)
Q Consensus 267 ~~~~iidD~~a~np~s~~~al~~~---~~~~~i~V--~g~~~~~~~~~~~~~~~~~~~~l~~--~d--~vi-~~g~~~~~ 336 (402)
++.-++|=.+..+.+.+.++++-+ ++-|.|+| ||+...... ..+.+.+.+.. .+ .|+ +.|.+.+.
T Consensus 317 ~pANFlD~GG~a~~~~v~~a~~ii~~d~~vk~iliNIfGGI~~cd~-----iA~gii~a~~~~~~~~pivvRl~Gtn~~~ 391 (422)
T PLN00124 317 SPANFLDVGGNASEQQVVEAFKILTSDDKVKAILVNIFGGIMKCDV-----IASGIVNAAKQVGLKVPLVVRLEGTNVDQ 391 (422)
T ss_pred CcceeeecCCCCCHHHHHHHHHHHhcCCCCcEEEEEecCCccchHH-----HHHHHHHHHHhcCCCCcEEEEcCCCCHHH
Confidence 344566544678899999999876 23456666 887644321 22334443321 12 222 23777777
Q ss_pred HHHHHHhCCCCccccccccHHHHHHHHHHhc
Q 015701 337 IWKTLVNNGLSIPCFAVANMKDAVNHARRMA 367 (402)
Q Consensus 337 ~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~ 367 (402)
-.+.|+..+. ++.+++|+++|.+.+.+.+
T Consensus 392 g~~~l~~~~~--~~~~~~~l~~A~~~~v~~~ 420 (422)
T PLN00124 392 GKRILKESGM--TLITAEDLDDAAEKAVKAL 420 (422)
T ss_pred HHHHHHhCCC--CeEEcCCHHHHHHHHHHHh
Confidence 7788877764 5778999999999988653
No 188
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=57.01 E-value=11 Score=33.43 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=20.4
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCcee
Q 015701 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
.+|+|||. .||||++.++.. .|..+.
T Consensus 2 ~~igitG~igsGKst~~~~l~~----~g~~vi 29 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS----EGFLIV 29 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCCeEE
Confidence 57999997 579999998874 576553
No 189
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=56.90 E-value=12 Score=35.47 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=22.4
Q ss_pred ecCCChhhHHHHHHHHHHhcCCceeee
Q 015701 49 TGTNGKSTVVTFVGQMLNHLGIEAFVG 75 (402)
Q Consensus 49 TGT~GKTTt~~ml~~iL~~~g~~~~~~ 75 (402)
-|-.||||++..++--+...|.++...
T Consensus 9 KGGVGKTT~aaA~A~~~A~~G~rtLlv 35 (305)
T PF02374_consen 9 KGGVGKTTVAAALALALARRGKRTLLV 35 (305)
T ss_dssp STTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred CCCCCcHHHHHHHHHHHhhCCCCeeEe
Confidence 367999999999999999999987543
No 190
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=56.65 E-value=12 Score=33.22 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=22.3
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHHHh
Q 015701 41 RSIKILAVTGT--NGKSTVVTFVGQMLNH 67 (402)
Q Consensus 41 ~~~~vI~VTGT--~GKTTt~~ml~~iL~~ 67 (402)
+...+|+|+|. .||||.+..|...|..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45579999996 5899999999988763
No 191
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=56.42 E-value=13 Score=31.49 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=22.0
Q ss_pred cCCChhhHHHHHHHHHHhcCCceee
Q 015701 50 GTNGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 50 GT~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
+-.|||+++.-|...|++.|.++.+
T Consensus 7 ~~~GKT~va~~L~~~l~~~g~~V~~ 31 (166)
T TIGR00347 7 TGVGKTVASSALAAKLKKAGYSVGY 31 (166)
T ss_pred CCccHHHHHHHHHHHHHHCCCcEEE
Confidence 3479999999999999999998854
No 192
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=56.34 E-value=32 Score=29.87 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=27.9
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHHHhcCCcee
Q 015701 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 41 ~~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
++..+|=.||= .||||.+..|...|.+.|+.+.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y 55 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVY 55 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 45568888885 5799999999999999999874
No 193
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=56.07 E-value=11 Score=37.71 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=23.8
Q ss_pred cEEEEecC--CChhhHHHHHHHHHH-hcCCceee
Q 015701 44 KILAVTGT--NGKSTVVTFVGQMLN-HLGIEAFV 74 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL~-~~g~~~~~ 74 (402)
.+|.++|. .|||||+.-|+..|. ..|.++.+
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~l 133 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLL 133 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEE
Confidence 46767764 579999999999886 57887743
No 194
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=55.77 E-value=21 Score=30.39 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=23.5
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCceee
Q 015701 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 45 vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
++.++|- .||||++..++..|.+.|.++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~ 33 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLL 33 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 4555554 58999999999999988887743
No 195
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=55.72 E-value=10 Score=35.57 Aligned_cols=26 Identities=38% Similarity=0.528 Sum_probs=21.4
Q ss_pred EEEEecCCChhhHHHHHHHHHHhcCCc
Q 015701 45 ILAVTGTNGKSTVVTFVGQMLNHLGIE 71 (402)
Q Consensus 45 vI~VTGT~GKTTt~~ml~~iL~~~g~~ 71 (402)
+.|=+|| |||+++..++..|...|..
T Consensus 63 l~G~pGT-GKT~lA~~ia~~l~~~g~~ 88 (284)
T TIGR02880 63 FTGNPGT-GKTTVALRMAQILHRLGYV 88 (284)
T ss_pred EEcCCCC-CHHHHHHHHHHHHHHcCCc
Confidence 5566777 9999999999999887753
No 196
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=55.48 E-value=9.2 Score=33.25 Aligned_cols=20 Identities=40% Similarity=0.723 Sum_probs=16.5
Q ss_pred EEEEecC--CChhhHHHHHHHH
Q 015701 45 ILAVTGT--NGKSTVVTFVGQM 64 (402)
Q Consensus 45 vI~VTGT--~GKTTt~~ml~~i 64 (402)
+|+|||+ .||||++.+++..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~ 22 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADK 22 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 4899997 6899999988765
No 197
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=55.37 E-value=16 Score=33.73 Aligned_cols=30 Identities=30% Similarity=0.449 Sum_probs=24.8
Q ss_pred cEEEEec----CCChhhHHHHHHHHHHhcCCcee
Q 015701 44 KILAVTG----TNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 44 ~vI~VTG----T~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
+.|.||| +-||+.|++-|..+|+..|+++.
T Consensus 2 KyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~ 35 (276)
T PF06418_consen 2 KYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVT 35 (276)
T ss_dssp EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EE
T ss_pred cEEEEeCCccccccHHHHHHHHHHHHHhCCeeee
Confidence 5688888 56999999999999999999983
No 198
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=55.33 E-value=20 Score=35.88 Aligned_cols=32 Identities=16% Similarity=0.333 Sum_probs=25.6
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcCCceee
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
..+|.++|- .|||||+.-|+..|...|+++.+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~l 128 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGL 128 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEE
Confidence 346777764 57999999999999999988753
No 199
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=54.89 E-value=12 Score=29.57 Aligned_cols=20 Identities=25% Similarity=0.572 Sum_probs=15.9
Q ss_pred EEEecC--CChhhHHHHHHHHH
Q 015701 46 LAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 46 I~VTGT--~GKTTt~~ml~~iL 65 (402)
|.|+|. .||||++..|...+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 455554 58999999999987
No 200
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=54.82 E-value=13 Score=35.43 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=38.9
Q ss_pred CcHHHHHHHhcCCc-eeeHH-------HHHHhhC---CCCCcEEEEecC---CChhhHHHHHHHHHHhcCCce
Q 015701 14 KATGLACLLQSGKR-VMSEL-------DFAAQVI---PRSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 14 ~~p~~~~a~~~~~~-~l~~~-------~~~~~~~---~~~~~vI~VTGT---~GKTTt~~ml~~iL~~~g~~~ 72 (402)
+...+..|...|.. ++..+ +++.+.. ....++|+|+|. .||||++.-|+..|...|.++
T Consensus 53 ~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~~~~~~~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~V 125 (322)
T TIGR03815 53 GGALWRAAAAVGAEHVAVLPEAEGWLVELLADLDQSPPARGVVVAVIGGRGGAGASTLAAALALAAARHGLRT 125 (322)
T ss_pred CHHHHHHHHHhChhheeeCCCCHHHHHHHHHhhccCCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCE
Confidence 44456777766766 44322 2222221 235678888865 579999999999999888766
No 201
>PRK05380 pyrG CTP synthetase; Validated
Probab=54.81 E-value=23 Score=36.16 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=27.6
Q ss_pred CcEEEEec----CCChhhHHHHHHHHHHhcCCcee
Q 015701 43 IKILAVTG----TNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 43 ~~vI~VTG----T~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
.+.|.||| +-||+.|++-|..+|+..|+++.
T Consensus 2 ~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~ 36 (533)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVT 36 (533)
T ss_pred ceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceE
Confidence 46788888 67999999999999999999984
No 202
>PRK06547 hypothetical protein; Provisional
Probab=54.72 E-value=19 Score=30.92 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=20.4
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
....+|+|+|.. ||||++..|+..+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799998875 6999999998775
No 203
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=54.65 E-value=2.4e+02 Score=28.27 Aligned_cols=253 Identities=17% Similarity=0.141 Sum_probs=119.5
Q ss_pred EEEecC---CChhhHHHHHHHHHHhcCCce---eeeccC----------chh---hhhhhhh----hccCCCCCCCccEE
Q 015701 46 LAVTGT---NGKSTVVTFVGQMLNHLGIEA---FVGGNL----------GNP---LSEAAFH----CIALPSSKPKFQVA 102 (402)
Q Consensus 46 I~VTGT---~GKTTt~~ml~~iL~~~g~~~---~~~g~~----------g~~---~~~~~~~----~~~~~~~~~~~~~~ 102 (402)
|.|+|| .||||++.-|-..|+..|.+| ..++.. |.| +....+. ...+.....+.|++
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDYIDP~~H~~atG~~srNLD~~mm~~~~v~~~f~~~~~~adi~ 82 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDYIDPGYHTAATGRPSRNLDSWMMGEEGVRALFARAAADADIA 82 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCccCchhhhHhhCCccCCCchhhcCHHHHHHHHHHhcCCCCEE
Confidence 556665 599999999999999998775 233332 111 1100000 00111124567799
Q ss_pred EEEeCcccccC------CC------ccc-cccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEEeC-CChhh
Q 015701 103 VVEVSSYQMEI------PN------KYF-CPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF-GNQHL 168 (402)
Q Consensus 103 V~E~~~~~l~~------~~------~~~-~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~n~-dd~~~ 168 (402)
|+|-=.|-.|- .+ ..+ -|-+.||..=+..+ |...++.-+..+=..++=.| +|+|. ..+.=
T Consensus 83 vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~s~-----S~AAiv~G~~~fdp~v~iaG-VIlNrVgserH 156 (451)
T COG1797 83 VIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGLSR-----SVAAIVKGFKHFDPDVNIAG-VILNRVGSERH 156 (451)
T ss_pred EEeeccccccCCCCCcCCCCHHHHHHHhCCCEEEEEeCcchhH-----HHHHHHHHHHhcCCCCceEE-EEEecCCCHHH
Confidence 99965432221 11 122 36666665544333 66666666655543333333 45665 32322
Q ss_pred HHHhh-ccc--ccEEEeecCCCceeccccccceEEEecCCeeeEEeeeccCcC--Chhh-HHHHHHHHHHHHHHHcCCCH
Q 015701 169 NEAIK-GHR--FNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM--GRHN-YHNAAVAALSVLGLDIGVDV 242 (402)
Q Consensus 169 ~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~--G~~~-~~Nal~A~~~a~~~~lgi~~ 242 (402)
.++.+ ... ..+-.+|.-+.. . ...+...+|.+. .++. ....+-.+ +....-.++.
T Consensus 157 ~~llr~Ale~~~gv~vlG~lpr~---------------~--~l~lp~RHLGLV~a~E~~~~~~~~~~~--a~~v~~~vDl 217 (451)
T COG1797 157 YELLRDALEEYTGVPVLGYLPRD---------------D--DLELPSRHLGLVPASERLELEAKLEAL--AEVVEKHVDL 217 (451)
T ss_pred HHHHHHHhhhcCCCcEEEEecCC---------------c--ccCCcccccccccchhhhhHHHHHHHH--HHHHHhhCCH
Confidence 22222 111 113333322110 0 001111122222 1222 11122222 2333457888
Q ss_pred HHHHHHhhcCCCCCCceeE-EEe-ec--CCeEEEEcC-----CCCCHHHHHHHHcccCCCcEEEEEcCCCCcCCCCCCcc
Q 015701 243 EALNSTIEILRTPPHRMQI-VHR-DI--QGVTWVDDS-----KATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313 (402)
Q Consensus 243 ~~i~~~L~~~~~~~gR~e~-~~~-~~--~~~~iidD~-----~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~ 313 (402)
+.+.+-...-.+.+..+.. ... .. ..+-|..|. |++|.+..+.+ +--++-|....|..
T Consensus 218 d~l~~ia~~~~~~~~~~~~~~~~~~~~~~rIAVA~D~AF~FyY~~nl~~Lr~~------GAelv~FSPL~D~~------- 284 (451)
T COG1797 218 DALLEIASSAGPLEPDLSPEPERGNPLGVRIAVARDAAFNFYYPENLELLREA------GAELVFFSPLADEE------- 284 (451)
T ss_pred HHHHHHHhccCCCCCCccccccccCCcCceEEEEecchhccccHHHHHHHHHC------CCEEEEeCCcCCCC-------
Confidence 8888766643222222222 110 11 225566665 66777666553 22355566654421
Q ss_pred hHhhhhccc-cccEEEEeCCChHHHHHHHHh
Q 015701 314 FEKLIEPLN-HHRCVITFGYSGVLIWKTLVN 343 (402)
Q Consensus 314 ~~~~~~~l~-~~d~vi~~g~~~~~~~~~l~~ 343 (402)
+- .+|.+++=|-.++...+.|.+
T Consensus 285 -------lP~~~D~vYlgGGYPElfA~~L~~ 308 (451)
T COG1797 285 -------LPPDVDAVYLGGGYPELFAEELSA 308 (451)
T ss_pred -------CCCCCCEEEeCCCChHHHHHHHhh
Confidence 22 278888888888877777754
No 204
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=54.52 E-value=14 Score=31.73 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=22.3
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCceee
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
+.++|.|.|.. ||||.+..|+.-+ |+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~---g~~~~~ 33 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY---GFTHLS 33 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh---CCcEEe
Confidence 46788888875 6999999998654 555533
No 205
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=54.14 E-value=23 Score=35.58 Aligned_cols=30 Identities=30% Similarity=0.495 Sum_probs=26.4
Q ss_pred cEEEEec----CCChhhHHHHHHHHHHhcCCcee
Q 015701 44 KILAVTG----TNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 44 ~vI~VTG----T~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
+.|.||| |-||+.|++-|..+|+..|+++.
T Consensus 2 KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt 35 (533)
T COG0504 2 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVT 35 (533)
T ss_pred eEEEEeCCeecccccHHHHHHHHHHHHHCCceEE
Confidence 4677777 67999999999999999999983
No 206
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=54.05 E-value=13 Score=31.70 Aligned_cols=25 Identities=36% Similarity=0.648 Sum_probs=21.8
Q ss_pred CcEEEEec--CCChhhHHHHHHHHHHh
Q 015701 43 IKILAVTG--TNGKSTVVTFVGQMLNH 67 (402)
Q Consensus 43 ~~vI~VTG--T~GKTTt~~ml~~iL~~ 67 (402)
.|+|+|+| |.||||...-|+.++..
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~fnt 34 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIFNT 34 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHHhCC
Confidence 47899998 78999999999999864
No 207
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=53.94 E-value=22 Score=34.88 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=26.7
Q ss_pred CCcEEEEec--CCChhhHHHHHHHHHHhcCCcee
Q 015701 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 42 ~~~vI~VTG--T~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
+.++|+++| -.|||||..-|+..+...|.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~ 238 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVG 238 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 457888888 67899999999998888887764
No 208
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=53.84 E-value=26 Score=35.82 Aligned_cols=30 Identities=30% Similarity=0.510 Sum_probs=26.6
Q ss_pred cEEEEec----CCChhhHHHHHHHHHHhcCCcee
Q 015701 44 KILAVTG----TNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 44 ~vI~VTG----T~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
+.|.||| +-||+.|++-|..+|+..|+++.
T Consensus 2 k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~ 35 (525)
T TIGR00337 2 KYIFVTGGVVSSLGKGITAASIGRLLKARGLKVT 35 (525)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHhCCCceE
Confidence 5688888 46999999999999999999984
No 209
>PLN02348 phosphoribulokinase
Probab=53.78 E-value=18 Score=35.50 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=24.2
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHHHhcC
Q 015701 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLG 69 (402)
Q Consensus 41 ~~~~vI~VTGT--~GKTTt~~ml~~iL~~~g 69 (402)
++..+|+|+|- .||||.+..|..+|...+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~ 77 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAA 77 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcc
Confidence 34579999996 589999999999997554
No 210
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=53.66 E-value=23 Score=32.85 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=22.7
Q ss_pred CcEEEEe---cCCChhhHHHHH-HHHHHhcCCce
Q 015701 43 IKILAVT---GTNGKSTVVTFV-GQMLNHLGIEA 72 (402)
Q Consensus 43 ~~vI~VT---GT~GKTTt~~ml-~~iL~~~g~~~ 72 (402)
.++|+|+ |-.||||++.-+ +.+++..|.++
T Consensus 2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V 35 (262)
T COG0455 2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKVV 35 (262)
T ss_pred CEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeE
Confidence 3577777 889999999999 55555566664
No 211
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=53.61 E-value=21 Score=33.37 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=23.5
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhc-C-Cce
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQMLNHL-G-IEA 72 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL~~~-g-~~~ 72 (402)
+..+|++.|. .|||||+..|+.-+... | .++
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V 227 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKV 227 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeE
Confidence 3458888885 47999999999888765 4 555
No 212
>PLN02924 thymidylate kinase
Probab=53.55 E-value=21 Score=32.18 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=27.6
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 41 ~~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
+..+.|+|.|- .||||.+.+|+..|+..|..+
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v 47 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA 47 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 34568999995 689999999999999999876
No 213
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=53.52 E-value=15 Score=33.96 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=21.6
Q ss_pred cCCChhhHHHHHHHHHHhcCCceeeec
Q 015701 50 GTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (402)
Q Consensus 50 GT~GKTTt~~ml~~iL~~~g~~~~~~g 76 (402)
|--|||||++=|+..|...|.++...|
T Consensus 9 GGIGKST~~~Nlsaala~~G~kVl~iG 35 (273)
T PF00142_consen 9 GGIGKSTTASNLSAALAEMGKKVLQIG 35 (273)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CCcccChhhhHHHHHHHhccceeeEec
Confidence 567999999999999999999985544
No 214
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=53.29 E-value=15 Score=33.49 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.8
Q ss_pred EecCCChhhHHHHHHHHHHhcCCce
Q 015701 48 VTGTNGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 48 VTGT~GKTTt~~ml~~iL~~~g~~~ 72 (402)
--|..||||++..++..|...|.++
T Consensus 10 ~KGGvGKSt~a~~la~~l~~~g~~v 34 (241)
T PRK13886 10 GKGGVGKSFIAATIAQYKASKGQKP 34 (241)
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCCE
Confidence 3478899999999999999888776
No 215
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=52.61 E-value=13 Score=33.01 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=20.5
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
..+||+||. .||||++.++..-| |..+
T Consensus 6 ~~~IglTG~iGsGKStv~~~l~~~l---g~~v 34 (204)
T PRK14733 6 TYPIGITGGIASGKSTATRILKEKL---NLNV 34 (204)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHc---CCeE
Confidence 357999996 78999999988533 5544
No 216
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=52.53 E-value=25 Score=34.82 Aligned_cols=31 Identities=16% Similarity=0.158 Sum_probs=25.0
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCceee
Q 015701 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
++|++.|- .|||||...|+.-|...|.++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVgl 274 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGF 274 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEE
Confidence 56777765 47999999999999888887743
No 217
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=52.22 E-value=14 Score=32.43 Aligned_cols=26 Identities=38% Similarity=0.630 Sum_probs=20.3
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCcee
Q 015701 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
.+|+|||. .||||++.++.. .|+.+.
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~----~g~~~i 30 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE----LGAPVI 30 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----cCCEEE
Confidence 57999995 689999998886 365543
No 218
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=52.20 E-value=16 Score=32.47 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=20.8
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHH
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL~ 66 (402)
...+|+|.|+ .||||.+.+|+.=|.
T Consensus 3 ~~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 3 VAMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred cccEEEEecccccCHHHHHHHHHHHhC
Confidence 3578999997 689999999997665
No 219
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=51.81 E-value=22 Score=35.31 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=25.5
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHHhcCCcee
Q 015701 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 43 ~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~ 73 (402)
.-+|||+|-+ ||||.+..|..+|+..|.++.
T Consensus 212 PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vg 244 (460)
T PLN03046 212 PLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSA 244 (460)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCceE
Confidence 4589999975 799999999999987666553
No 220
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=51.26 E-value=24 Score=35.78 Aligned_cols=31 Identities=35% Similarity=0.381 Sum_probs=27.7
Q ss_pred CCcEEEEec------CCChhhHHHHHHHHHHhcCCce
Q 015701 42 SIKILAVTG------TNGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 42 ~~~vI~VTG------T~GKTTt~~ml~~iL~~~g~~~ 72 (402)
+.++|.||. .-|||||+.=|++.|.+.|.++
T Consensus 37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~ 73 (524)
T cd00477 37 DGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKA 73 (524)
T ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcE
Confidence 568999999 4599999999999999999875
No 221
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=51.22 E-value=16 Score=32.49 Aligned_cols=25 Identities=44% Similarity=0.713 Sum_probs=19.3
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
.+|+|||. .||||++.++.. .|..+
T Consensus 6 ~~igitG~igsGKSt~~~~l~~----~g~~v 32 (208)
T PRK14731 6 FLVGVTGGIGSGKSTVCRFLAE----MGCEL 32 (208)
T ss_pred EEEEEECCCCCCHHHHHHHHHH----CCCeE
Confidence 57999997 579999888775 46544
No 222
>PLN02327 CTP synthase
Probab=50.87 E-value=30 Score=35.57 Aligned_cols=62 Identities=21% Similarity=0.304 Sum_probs=40.0
Q ss_pred cEEEEec----CCChhhHHHHHHHHHHhcCCceee---eccCchhhhhhhhhhccCCCCCCCccEEEEEeC-cccccC
Q 015701 44 KILAVTG----TNGKSTVVTFVGQMLNHLGIEAFV---GGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVS-SYQMEI 113 (402)
Q Consensus 44 ~vI~VTG----T~GKTTt~~ml~~iL~~~g~~~~~---~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~-~~~l~~ 113 (402)
+.|.||| +-||+.|++-|..+|+..|+++.+ -+.++.-... + .| -+.-+++|.|=| +-++|.
T Consensus 2 k~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPYlNvD~Gt--m----sP--~eHGEVfVt~DG~EtDLDl 71 (557)
T PLN02327 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGT--M----SP--FEHGEVFVLDDGGEVDLDL 71 (557)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeeeecccccccCCCC--C----CC--cccceEEEccCCccccccc
Confidence 5688888 569999999999999999999843 3333221110 0 01 122466888877 445654
No 223
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=50.82 E-value=21 Score=33.23 Aligned_cols=30 Identities=23% Similarity=0.407 Sum_probs=22.3
Q ss_pred CcEEEEec--CCChhhHHHHHHHHHHhcCCce
Q 015701 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 43 ~~vI~VTG--T~GKTTt~~ml~~iL~~~g~~~ 72 (402)
+|.|.++| ..||||.+.-|...|...+..+
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v 32 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEV 32 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--E
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEE
Confidence 46788888 6899999999999999855544
No 224
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=50.75 E-value=17 Score=29.90 Aligned_cols=51 Identities=16% Similarity=0.339 Sum_probs=35.6
Q ss_pred EEEEecCCChhhHHHHHHHHHHhcCCceee-eccCchhhhhhhhhhccCCCCCCCccEEEEEeCcc
Q 015701 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFV-GGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY 109 (402)
Q Consensus 45 vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~-~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~ 109 (402)
+.+..|-.||||++..++..++..|.++.. ....+.+ .-++|+.|+.++.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~--------------~~~yd~VIiD~p~~ 55 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLA--------------NLDYDYIIIDTGAG 55 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCC--------------CCCCCEEEEECCCC
Confidence 345568899999999999999999987633 2222111 11277899999853
No 225
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=50.28 E-value=18 Score=31.88 Aligned_cols=27 Identities=37% Similarity=0.589 Sum_probs=20.6
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCcee
Q 015701 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
+.|+|||. .||||++.+++..+ |..+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~---g~~~i 30 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK---GIPIL 30 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh---CCeEe
Confidence 47999996 68999999988654 65543
No 226
>PRK13768 GTPase; Provisional
Probab=50.26 E-value=16 Score=33.59 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=22.4
Q ss_pred EEEEec--CCChhhHHHHHHHHHHhcCCce
Q 015701 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 45 vI~VTG--T~GKTTt~~ml~~iL~~~g~~~ 72 (402)
+|.|+| ..||||++.-++..|...|.++
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v 33 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDV 33 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCce
Confidence 455554 5789999999999999888776
No 227
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=49.93 E-value=21 Score=31.80 Aligned_cols=31 Identities=23% Similarity=0.397 Sum_probs=26.1
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcCCcee
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
...|++-|- .||||.+.+|...|+..|+.+.
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~ 35 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVV 35 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 456777774 6899999999999999998763
No 228
>KOG1324 consensus Dihydrofolate reductase [Coenzyme transport and metabolism]
Probab=49.26 E-value=17 Score=31.26 Aligned_cols=14 Identities=36% Similarity=0.588 Sum_probs=12.2
Q ss_pred hcCCCCCCceeEEE
Q 015701 250 EILRTPPHRMQIVH 263 (402)
Q Consensus 250 ~~~~~~~gR~e~~~ 263 (402)
++++|++||++++-
T Consensus 61 ~k~RPL~gRiNiVL 74 (190)
T KOG1324|consen 61 EKFRPLPGRINVVL 74 (190)
T ss_pred cccCCCCCceEEEE
Confidence 46899999999985
No 229
>PRK10867 signal recognition particle protein; Provisional
Probab=49.21 E-value=28 Score=34.77 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=26.0
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhc-CCceee
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQMLNHL-GIEAFV 74 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL~~~-g~~~~~ 74 (402)
..+|.++|- .|||||+.-|+..|... |.++.+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~l 134 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLL 134 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEE
Confidence 457888875 47999999999999888 888743
No 230
>PRK06761 hypothetical protein; Provisional
Probab=48.88 E-value=15 Score=34.49 Aligned_cols=29 Identities=34% Similarity=0.606 Sum_probs=24.1
Q ss_pred cEEEEec--CCChhhHHHHHHHHHHhcCCce
Q 015701 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 44 ~vI~VTG--T~GKTTt~~ml~~iL~~~g~~~ 72 (402)
++|.|+| ..||||++..|..-|...|..+
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v 34 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEV 34 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEE
Confidence 5788888 4689999999999998777665
No 231
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=48.09 E-value=33 Score=30.16 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=23.4
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCcee
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~ 73 (402)
+-++..|+|-. ||||+...+...+...|.++.
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~ 50 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVI 50 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EE
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 33566666655 499999999999999998864
No 232
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=48.07 E-value=23 Score=35.49 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=23.9
Q ss_pred EEEEecC---CChhhHHHHHHHHHHhcCCce
Q 015701 45 ILAVTGT---NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 45 vI~VTGT---~GKTTt~~ml~~iL~~~g~~~ 72 (402)
.|-|||| .|||+++..|.+.|++.|.++
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v 33 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAV 33 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCee
Confidence 4566665 699999999999999999876
No 233
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=47.90 E-value=18 Score=33.85 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=19.8
Q ss_pred CCCcEEEEecCCChhhHH-HHHHHHHHhcCCc
Q 015701 41 RSIKILAVTGTNGKSTVV-TFVGQMLNHLGIE 71 (402)
Q Consensus 41 ~~~~vI~VTGT~GKTTt~-~ml~~iL~~~g~~ 71 (402)
...-|.|.+|| |||||. .-+.++|...+..
T Consensus 14 ~~~lV~a~AGS-GKT~~l~~ri~~ll~~~~~~ 44 (315)
T PF00580_consen 14 GPLLVNAGAGS-GKTTTLLERIAYLLYEGGVP 44 (315)
T ss_dssp SEEEEEE-TTS-SHHHHHHHHHHHHHHTSSST
T ss_pred CCEEEEeCCCC-CchHHHHHHHHHhhccccCC
Confidence 45568888885 999976 4456677666543
No 234
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=47.78 E-value=32 Score=35.21 Aligned_cols=31 Identities=32% Similarity=0.333 Sum_probs=27.7
Q ss_pred CCcEEEEec------CCChhhHHHHHHHHHHhcCCce
Q 015701 42 SIKILAVTG------TNGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 42 ~~~vI~VTG------T~GKTTt~~ml~~iL~~~g~~~ 72 (402)
+.++|.||. .-|||||+.=|++.|.+.|.++
T Consensus 53 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~ 89 (578)
T PRK13506 53 KGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKV 89 (578)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCce
Confidence 468999999 4589999999999999999875
No 235
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=47.51 E-value=21 Score=29.84 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=22.4
Q ss_pred EEEec--CCChhhHHHHHHHHHHhcCCcee
Q 015701 46 LAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 46 I~VTG--T~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
|++.| -.||||++..+...+...|.++.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ 31 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVA 31 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 45554 36899999999999999888763
No 236
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=47.40 E-value=25 Score=31.45 Aligned_cols=30 Identities=33% Similarity=0.449 Sum_probs=19.5
Q ss_pred CCcEEEEecCCChhhHHHHHHHHHH-hcCCce
Q 015701 42 SIKILAVTGTNGKSTVVTFVGQMLN-HLGIEA 72 (402)
Q Consensus 42 ~~~vI~VTGT~GKTTt~~ml~~iL~-~~g~~~ 72 (402)
+.=++|-||| |||+|...|-.=|. ..+..+
T Consensus 25 H~~I~G~TGs-GKS~~~~~ll~~l~~~~~~~~ 55 (229)
T PF01935_consen 25 HIAIFGTTGS-GKSNTVKVLLEELLKKKGAKV 55 (229)
T ss_pred eEEEECCCCC-CHHHHHHHHHHHHHhcCCCCE
Confidence 4457777775 89988776665555 555544
No 237
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=47.37 E-value=10 Score=32.34 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=17.9
Q ss_pred EEEecCCChhhHHHHHHHHHHhcC
Q 015701 46 LAVTGTNGKSTVVTFVGQMLNHLG 69 (402)
Q Consensus 46 I~VTGT~GKTTt~~ml~~iL~~~g 69 (402)
|++-| +||||++..|++++.+.|
T Consensus 5 IAtiG-CGKTTva~aL~~LFg~wg 27 (168)
T PF08303_consen 5 IATIG-CGKTTVALALSNLFGEWG 27 (168)
T ss_pred ecCCC-cCHHHHHHHHHHHcCCCC
Confidence 34444 799999999999997644
No 238
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=47.26 E-value=27 Score=29.05 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=21.3
Q ss_pred EEEec--CCChhhHHHHHHHHHHhcCCce
Q 015701 46 LAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 46 I~VTG--T~GKTTt~~ml~~iL~~~g~~~ 72 (402)
|.++| ..||||.+..|...|...|..+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~ 30 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPV 30 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 55565 4689999999999998777654
No 239
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=47.25 E-value=15 Score=32.42 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=15.2
Q ss_pred EEEEecCC--ChhhHHHHHHH
Q 015701 45 ILAVTGTN--GKSTVVTFVGQ 63 (402)
Q Consensus 45 vI~VTGT~--GKTTt~~ml~~ 63 (402)
+|+|||.. ||||++.++..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~ 21 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE 21 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH
Confidence 48999975 69999887763
No 240
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=47.11 E-value=17 Score=35.88 Aligned_cols=20 Identities=35% Similarity=0.463 Sum_probs=17.2
Q ss_pred cEEEEecC--CChhhHHHHHHH
Q 015701 44 KILAVTGT--NGKSTVVTFVGQ 63 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~ 63 (402)
..|+|||. .||||++.+|+.
T Consensus 2 ~~IgltG~igsGKStv~~~L~~ 23 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE 23 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 57999995 789999999875
No 241
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=46.91 E-value=24 Score=30.58 Aligned_cols=35 Identities=14% Similarity=0.288 Sum_probs=24.7
Q ss_pred HHHHHHhhCCCCCcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 31 ELDFAAQVIPRSIKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 31 ~~~~~~~~~~~~~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
..+++.... +....++|+|.+ ||||+...|...+.
T Consensus 14 ~~~~l~~~v-~~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 14 QAAYLWLAV-EARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HHHHHHHHH-hCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 344455445 466789999965 79999888777664
No 242
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=46.15 E-value=23 Score=30.49 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=19.4
Q ss_pred CChhhHHHHHHHHHHhcCCce
Q 015701 52 NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 52 ~GKTTt~~ml~~iL~~~g~~~ 72 (402)
.||||.+.+|..-|...|.++
T Consensus 7 sGKtT~~~~L~~~l~~~~~~~ 27 (186)
T PF02223_consen 7 SGKTTQIRLLAEALKEKGYKV 27 (186)
T ss_dssp SSHHHHHHHHHHHHHHTTEEE
T ss_pred CCHHHHHHHHHHHHHHcCCcc
Confidence 699999999999999999874
No 243
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=45.37 E-value=20 Score=31.86 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=22.8
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
.+..+.++-|-| ||||+-+||+.+|.
T Consensus 26 e~Gei~GlLG~NGAGKTT~LRmiatlL~ 53 (245)
T COG4555 26 EEGEITGLLGENGAGKTTLLRMIATLLI 53 (245)
T ss_pred ccceEEEEEcCCCCCchhHHHHHHHhcc
Confidence 467899999988 59999999999995
No 244
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=45.21 E-value=76 Score=26.53 Aligned_cols=45 Identities=16% Similarity=0.167 Sum_probs=23.9
Q ss_pred hHHHHHHHHhCCCCcc-c-cccccHHHHHHHHHHhcC--CCCEEEEcCC
Q 015701 334 GVLIWKTLVNNGLSIP-C-FAVANMKDAVNHARRMAT--NGDAIVLSPG 378 (402)
Q Consensus 334 ~~~~~~~l~~~~~~~~-~-~~~~~~~~ai~~~~~~~~--~~d~vll~~G 378 (402)
...+.+.++..|.... . ...+|.++..+.+.+..+ ..|+|+.++|
T Consensus 22 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG 70 (152)
T cd00886 22 GPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGG 70 (152)
T ss_pred HHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 3445566666664211 1 234555554444444445 5798888744
No 245
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=45.13 E-value=28 Score=37.84 Aligned_cols=32 Identities=25% Similarity=0.157 Sum_probs=29.0
Q ss_pred CCCcEEEEecCC---ChhhHHHHHHHHHHhcCCce
Q 015701 41 RSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 41 ~~~~vI~VTGT~---GKTTt~~ml~~iL~~~g~~~ 72 (402)
-+.+.+.||||+ |||-++..|.+.++..|.++
T Consensus 25 ~~~~~~fI~GtnT~VGKT~vS~~L~~~~~~~g~~~ 59 (817)
T PLN02974 25 LSCPAFAVWGANTAVGKTLVSAGLAAAAASRRSPV 59 (817)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCce
Confidence 578999999997 99999999999999998765
No 246
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=45.13 E-value=44 Score=28.22 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=28.2
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHHHhcCCcee
Q 015701 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 41 ~~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
++.-+|=|||- .||+|.+-.|.+.|.+.|..++
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y 63 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTY 63 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEE
Confidence 56778999985 5899999999999999997764
No 247
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=44.92 E-value=29 Score=30.51 Aligned_cols=28 Identities=36% Similarity=0.602 Sum_probs=20.9
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHH--HhcCC
Q 015701 43 IKILAVTGTN--GKSTVVTFVGQML--NHLGI 70 (402)
Q Consensus 43 ~~vI~VTGT~--GKTTt~~ml~~iL--~~~g~ 70 (402)
..+++|||.| ||||...+|.... .+.|.
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~ 60 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGLAVLLAQIGC 60 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHHHcCC
Confidence 3699999998 6999999998433 44453
No 248
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=44.75 E-value=1.1e+02 Score=25.16 Aligned_cols=86 Identities=17% Similarity=0.206 Sum_probs=46.3
Q ss_pred cEEEEEcCCCCcCCCCCCcchHhhhhccc-c-ccEEEEeCCC--h---HHHHHHHHhCCCCcccc-----ccccHHHHHH
Q 015701 294 KCVILLGGQAKVLNGQESNGFEKLIEPLN-H-HRCVITFGYS--G---VLIWKTLVNNGLSIPCF-----AVANMKDAVN 361 (402)
Q Consensus 294 ~~i~V~g~~~~~~~~~~~~~~~~~~~~l~-~-~d~vi~~g~~--~---~~~~~~l~~~~~~~~~~-----~~~~~~~ai~ 361 (402)
|.++|.|+....| .+++..+. . ...+++++.+ . ..+.+.++..+....+. ..++.+++++
T Consensus 1 k~~lItGa~~giG--------~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (167)
T PF00106_consen 1 KTVLITGASSGIG--------RALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIE 72 (167)
T ss_dssp EEEEEETTTSHHH--------HHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHH
T ss_pred CEEEEECCCCHHH--------HHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccc
Confidence 4688888765544 23444443 2 5567777655 2 33445565444221111 1235566667
Q ss_pred HHHHhcCCCCEEEEcCCCcccccccC
Q 015701 362 HARRMATNGDAIVLSPGCASFDEFRN 387 (402)
Q Consensus 362 ~~~~~~~~~d~vll~~G~~s~~~~~~ 387 (402)
.+.+...+=|+++...|......+.+
T Consensus 73 ~~~~~~~~ld~li~~ag~~~~~~~~~ 98 (167)
T PF00106_consen 73 EVIKRFGPLDILINNAGIFSDGSLDD 98 (167)
T ss_dssp HHHHHHSSESEEEEECSCTTSBSGGG
T ss_pred cccccccccccccccccccccccccc
Confidence 76655567788876656544444433
No 249
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=44.67 E-value=35 Score=34.94 Aligned_cols=32 Identities=38% Similarity=0.508 Sum_probs=28.2
Q ss_pred CCcEEEEec------CCChhhHHHHHHHHHHhcCCcee
Q 015701 42 SIKILAVTG------TNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 42 ~~~vI~VTG------T~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
+.++|.||. .-|||||+.=|+..|.+.|.++.
T Consensus 54 ~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~~Gkkvl 91 (557)
T PRK13505 54 DGKLILVTAINPTPAGEGKSTVTVGLGDALNKIGKKTV 91 (557)
T ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 468999999 45899999999999999999864
No 250
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=44.26 E-value=36 Score=34.55 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=19.9
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 43 IKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 43 ~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
..+|++.|.| |||||+..|+..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH
Confidence 4688888875 69999999998774
No 251
>PRK01184 hypothetical protein; Provisional
Probab=44.15 E-value=30 Score=29.74 Aligned_cols=27 Identities=30% Similarity=0.589 Sum_probs=19.6
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcCCcee
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
+++|++||- .||||++. ++++.|+.+.
T Consensus 1 ~~~i~l~G~~GsGKsT~a~----~~~~~g~~~i 29 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK----IAREMGIPVV 29 (184)
T ss_pred CcEEEEECCCCCCHHHHHH----HHHHcCCcEE
Confidence 358999996 57999765 4677787653
No 252
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=44.06 E-value=2e+02 Score=24.37 Aligned_cols=144 Identities=14% Similarity=0.114 Sum_probs=79.8
Q ss_pred CChhhHHHHHHHHHHhcCCceeeeccCchhhhhhhhhhccCCCCCCCccEEEEEeCcc-cccCCCccccccEEEEecCCc
Q 015701 52 NGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY-QMEIPNKYFCPTVSVVLNLTP 130 (402)
Q Consensus 52 ~GKTTt~~ml~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~-~l~~~~~~~~p~i~iiTni~~ 130 (402)
-|=-|+..+|+..+...|+.+......|.-. ....-++-+-++.. ...... .-++|+.|..+-
T Consensus 3 qGv~t~g~ila~a~~~~G~~v~~~~~ygs~~-------------rGG~~~~~vris~~~~~~~~~-~~~~Dilv~l~~-- 66 (173)
T PF01558_consen 3 QGVVTAGKILARAAAREGYYVQSTPEYGSEI-------------RGGPVVSHVRISDEPIIPSPP-VGEADILVALDP-- 66 (173)
T ss_dssp STHHHHHHHHHHHHHHTTSEEEEEEEEESSS-------------SSSCEEEEEEEESS--SSSS--TSSESEEEESSH--
T ss_pred cHHHHHHHHHHHHHHHcCCCEEEEeCCChhh-------------cCCeEEEEEEEecCcCccCcc-cCCCCEEEEcCH--
Confidence 3556888999999999999886666555321 22343455556643 222222 147888888752
Q ss_pred chhcCCCCHHHHHHHHHHhccccCCCeEEEEeCCChhhHHHhhcccc------cEEEeecCCCceeccccccceEEEecC
Q 015701 131 DHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRF------NLAWIGAFPGVKIDTEAKTASFEVPAV 204 (402)
Q Consensus 131 dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (402)
+.+. ..+..++++|++|+|.+............. +++.+ +
T Consensus 67 ---------~~~~----~~~~~l~~~g~vi~ns~~~~~~~~~~~~~~~~~~~~~v~~i-------------------p-- 112 (173)
T PF01558_consen 67 ---------EALE----RHLKGLKPGGVVIINSSLVKPEPEEKDKPAYFPRIERVIGI-------------------P-- 112 (173)
T ss_dssp ---------HHHH----HCGTTCETTEEEEEETTT-CHHHHHHHCCCHHHHHCEEEEE----------------------
T ss_pred ---------HHHH----HHhcCcCcCeEEEEECCCCCcHhHhhccccccccceeEEec-------------------c--
Confidence 2222 556677899999999864222111111000 11111 0
Q ss_pred CeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHcCCCHHHHHHHhhcC
Q 015701 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252 (402)
Q Consensus 205 ~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~ 252 (402)
....-....+.....|.++.- +++..++++.+.+.+++++.
T Consensus 113 -----~~~ia~~~~~~~~~~N~~~lG--a~~~~~~l~~e~~~~~i~~~ 153 (173)
T PF01558_consen 113 -----ATEIAKELGGNPRFANMVMLG--ALAKLLGLPLESLEEAIKER 153 (173)
T ss_dssp -----HHHHHHHTTS-GGGHHHHHHH--HHHHHHTS-HHHHHHHHHHH
T ss_pred -----HHHHHHhhhcchhhHHHHHHH--HHHHHcCCCHHHHHHHHHHH
Confidence 000011233335566776554 67888899999999999873
No 253
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=44.06 E-value=30 Score=37.39 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=27.0
Q ss_pred CCcEEEEecC---CChhhHHHHHHHHHHhcCCcee
Q 015701 42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 42 ~~~vI~VTGT---~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
..++|+||++ .||||++.-|+..|...|.++.
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvL 579 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRAL 579 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEE
Confidence 4578888865 6899999999999999998774
No 254
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=43.87 E-value=32 Score=33.22 Aligned_cols=31 Identities=26% Similarity=0.190 Sum_probs=23.0
Q ss_pred CCcEEEEec-C-CChhhHHHHHHHHHHhcCCce
Q 015701 42 SIKILAVTG-T-NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 42 ~~~vI~VTG-T-~GKTTt~~ml~~iL~~~g~~~ 72 (402)
..|.+.|-| | .||||.|.||-.---..|+++
T Consensus 102 ~GPrv~vVGp~d~GKsTl~r~L~nyavk~gr~P 134 (415)
T KOG2749|consen 102 YGPRVMVVGPTDVGKSTLCRILLNYAVKQGRRP 134 (415)
T ss_pred cCCEEEEECCCccchHHHHHHHHHHHHHcCCcc
Confidence 356555555 4 499999999987777778875
No 255
>PRK06217 hypothetical protein; Validated
Probab=43.86 E-value=23 Score=30.62 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=17.0
Q ss_pred EEEEecC--CChhhHHHHHHHHH
Q 015701 45 ILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 45 vI~VTGT--~GKTTt~~ml~~iL 65 (402)
.|.|+|+ .||||.+..|+..|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 4677764 58999999999877
No 256
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=43.74 E-value=90 Score=26.73 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=18.7
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCceee
Q 015701 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
|++-|||- .||||+..-+-. ....|.++..
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~-~~~~~~~~~v 32 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK-RNRQGERVAV 32 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHH-HhcCCceeEE
Confidence 57888884 789988554444 4556777643
No 257
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=43.24 E-value=24 Score=32.04 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=25.5
Q ss_pred EEEEe--cCCChhhHHHHHHHHHHhcCCceeeec
Q 015701 45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (402)
Q Consensus 45 vI~VT--GT~GKTTt~~ml~~iL~~~g~~~~~~g 76 (402)
.|+|= |-=|||||++=+++.|...|.++...|
T Consensus 3 ~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vG 36 (278)
T COG1348 3 QIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVG 36 (278)
T ss_pred eEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEc
Confidence 35553 556899999999999999999986544
No 258
>PRK06762 hypothetical protein; Provisional
Probab=43.07 E-value=26 Score=29.54 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=18.7
Q ss_pred cEEEEec--CCChhhHHHHHHHHH
Q 015701 44 KILAVTG--TNGKSTVVTFVGQML 65 (402)
Q Consensus 44 ~vI~VTG--T~GKTTt~~ml~~iL 65 (402)
++|.++| -.||||.+..|+.-|
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 5788999 468999999998777
No 259
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=42.85 E-value=35 Score=33.32 Aligned_cols=34 Identities=21% Similarity=0.118 Sum_probs=27.8
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCceeeec
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~~~g 76 (402)
+..+|+|+|. .||||....|...|+.. +++.+.-
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik 39 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYK 39 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEE
Confidence 5679999994 68999999999999988 7775433
No 260
>PRK13695 putative NTPase; Provisional
Probab=42.50 E-value=36 Score=29.02 Aligned_cols=28 Identities=29% Similarity=0.533 Sum_probs=21.3
Q ss_pred EEEEecCC--ChhhHHHHHHHHHHhcCCce
Q 015701 45 ILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 45 vI~VTGT~--GKTTt~~ml~~iL~~~g~~~ 72 (402)
.|++||.+ ||||...++..-|...|..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~ 31 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKV 31 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 36788765 79999999888887767653
No 261
>PRK08118 topology modulation protein; Reviewed
Probab=42.46 E-value=28 Score=29.67 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=17.2
Q ss_pred cEEEEecC--CChhhHHHHHHHHHH
Q 015701 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL~ 66 (402)
+.|.|.|+ .||||.+..|+..|.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34667664 589999999997764
No 262
>PRK00300 gmk guanylate kinase; Provisional
Probab=42.40 E-value=24 Score=30.87 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=21.6
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
++..+|+|+|.+ ||||.+.+|...+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 356789999986 89999999988764
No 263
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=42.29 E-value=25 Score=32.36 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=21.8
Q ss_pred ecCCChhhHHHHHHHHHHhcCCcee
Q 015701 49 TGTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 49 TGT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
.|..||||++.-++..+.+.|.++.
T Consensus 8 kgG~GKtt~a~~la~~~a~~g~~vL 32 (254)
T cd00550 8 KGGVGKTTISAATAVRLAEQGKKVL 32 (254)
T ss_pred CCCchHHHHHHHHHHHHHHCCCCce
Confidence 3567999999999999999998874
No 264
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=41.98 E-value=28 Score=31.07 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=20.8
Q ss_pred ecCCChhhHHHHHHHHHHhcCCce
Q 015701 49 TGTNGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 49 TGT~GKTTt~~ml~~iL~~~g~~~ 72 (402)
.|-.||||++.-++..+.+.|.++
T Consensus 7 ~~g~Gkt~~~~~la~~~a~~g~~~ 30 (217)
T cd02035 7 KGGVGKTTIAAATAVRLAEEGKKV 30 (217)
T ss_pred CCCchHHHHHHHHHHHHHHCCCcE
Confidence 455799999999999999998776
No 265
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=41.88 E-value=54 Score=31.02 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=29.2
Q ss_pred HHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecC--CChhhHHHHHHHHHHh
Q 015701 17 GLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGT--NGKSTVVTFVGQMLNH 67 (402)
Q Consensus 17 ~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT--~GKTTt~~ml~~iL~~ 67 (402)
.+..-.+.|.---...+++.+.. +....|.|+|. .||||+...|...+..
T Consensus 107 tl~~l~~~g~~~~~~~~~L~~~v-~~~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 107 TLDDYVEAGIMTAAQRDVLREAV-LARKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CHHHHHhcCCCCHHHHHHHHHHH-HcCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 34433444432222445565555 34567778885 4899998877766654
No 266
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=41.06 E-value=34 Score=36.48 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=23.8
Q ss_pred EEEEecC---CChhhHHHHHHHHHHhcCCcee
Q 015701 45 ILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 45 vI~VTGT---~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
.|-|+|| .|||+++.-|.+.|++.|.+++
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg 35 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVG 35 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 3555544 7899999999999999998874
No 267
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=40.96 E-value=28 Score=33.28 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=23.9
Q ss_pred cEEEEe--cCCChhhHHHHHHHHHHhcCCcee
Q 015701 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 44 ~vI~VT--GT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
+++.++ |-.||||++.-++--|.+.|.++.
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvL 34 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVL 34 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHcCCcEE
Confidence 345555 578999999999999999997664
No 268
>PRK13973 thymidylate kinase; Provisional
Probab=40.78 E-value=24 Score=31.39 Aligned_cols=30 Identities=23% Similarity=0.506 Sum_probs=25.3
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCcee
Q 015701 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
..|.+-|. .||||.+.+|+.-|...|+++.
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~ 35 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVL 35 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 56777775 6899999999999999998874
No 269
>PRK13947 shikimate kinase; Provisional
Probab=40.07 E-value=31 Score=29.11 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=17.2
Q ss_pred EEEEec--CCChhhHHHHHHHHH
Q 015701 45 ILAVTG--TNGKSTVVTFVGQML 65 (402)
Q Consensus 45 vI~VTG--T~GKTTt~~ml~~iL 65 (402)
.|.++| ..||||++.+|+..|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 466766 468999999999887
No 270
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=39.95 E-value=48 Score=27.25 Aligned_cols=31 Identities=26% Similarity=0.207 Sum_probs=22.8
Q ss_pred HHhhCCCCCcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 35 AAQVIPRSIKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 35 ~~~~~~~~~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
+++.+ +...+|.+.|.. ||||.+..+...|.
T Consensus 15 l~~~l-~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 15 FAKPL-DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHhC-CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34444 466799999974 79999888887763
No 271
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=39.87 E-value=28 Score=29.73 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=19.0
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHHh
Q 015701 44 KILAVTGTN--GKSTVVTFVGQMLNH 67 (402)
Q Consensus 44 ~vI~VTGT~--GKTTt~~ml~~iL~~ 67 (402)
++|.|+|.+ ||||+...|...|..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 467888875 699999999887753
No 272
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=39.59 E-value=27 Score=28.48 Aligned_cols=21 Identities=43% Similarity=0.717 Sum_probs=16.3
Q ss_pred EEEEecCC--ChhhHHHHHHHHH
Q 015701 45 ILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 45 vI~VTGT~--GKTTt~~ml~~iL 65 (402)
+|.|+|.+ ||||.+..|+.-|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 46777775 6999999888665
No 273
>PRK05541 adenylylsulfate kinase; Provisional
Probab=39.44 E-value=49 Score=28.16 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=24.9
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 41 ~~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
++..+|.++|- .||||.+..|..-|...+..+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~ 38 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNV 38 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 35568888886 579999999999998765443
No 274
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=39.25 E-value=25 Score=35.18 Aligned_cols=32 Identities=25% Similarity=0.466 Sum_probs=27.2
Q ss_pred CCcEEEEecCCChhhHHHHHHHHHHhcCCceee
Q 015701 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 42 ~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
+.=+-|=||| |||-|-..|+.-|+..|..|++
T Consensus 21 HGLIaGATGT-GKTvTLqvlAE~fS~~GVPVfl 52 (502)
T PF05872_consen 21 HGLIAGATGT-GKTVTLQVLAEQFSDAGVPVFL 52 (502)
T ss_pred cceeeccCCC-CceehHHHHHHHhhhcCCcEEE
Confidence 4456677886 9999999999999999999865
No 275
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=38.52 E-value=43 Score=29.88 Aligned_cols=29 Identities=38% Similarity=0.585 Sum_probs=21.6
Q ss_pred cEEEEecCC--ChhhHHHHHH--HHHHhcCCce
Q 015701 44 KILAVTGTN--GKSTVVTFVG--QMLNHLGIEA 72 (402)
Q Consensus 44 ~vI~VTGT~--GKTTt~~ml~--~iL~~~g~~~ 72 (402)
+++.|||.| ||||....+. .+|.+.|..+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v 62 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFV 62 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCee
Confidence 789999998 5787777777 5566677544
No 276
>PRK00131 aroK shikimate kinase; Reviewed
Probab=38.37 E-value=38 Score=28.44 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=19.7
Q ss_pred CCcEEEEec--CCChhhHHHHHHHHH
Q 015701 42 SIKILAVTG--TNGKSTVVTFVGQML 65 (402)
Q Consensus 42 ~~~vI~VTG--T~GKTTt~~ml~~iL 65 (402)
+.+.|.++| ..||||++..|+.-|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 446788887 468999999999887
No 277
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.33 E-value=23 Score=34.55 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=24.9
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCceee
Q 015701 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
.||-..|- .||||||.=+++.++..|+++.+
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~L 134 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVAL 134 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeE
Confidence 45555553 47999999999999999999854
No 278
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=37.45 E-value=45 Score=34.16 Aligned_cols=41 Identities=32% Similarity=0.374 Sum_probs=29.1
Q ss_pred HHHHHhhC-CCCCcEEEEecCC------ChhhHHHHHHHHHHhcCCce
Q 015701 32 LDFAAQVI-PRSIKILAVTGTN------GKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 32 ~~~~~~~~-~~~~~vI~VTGT~------GKTTt~~ml~~iL~~~g~~~ 72 (402)
++.+.++. +.+.+.|.||+.+ |||||+-=|.+.|...|.++
T Consensus 42 ~~~~~~~~~~~~gklilVTaitPTp~GEGKtTttiGL~~al~~lg~~~ 89 (557)
T PF01268_consen 42 LSVLERLKDKPDGKLILVTAITPTPAGEGKTTTTIGLAQALNRLGKKA 89 (557)
T ss_dssp TCHHHHTTTS---EEEEEEESS--TTS-SHHHHHHHHHHHHHHTT--E
T ss_pred hHHHhhccccCCCcEEEEEecCCCCCCCCceeHHHHHHHHHHhcCCce
Confidence 34454433 2467899999976 99999999999999999875
No 279
>PRK14528 adenylate kinase; Provisional
Probab=37.36 E-value=43 Score=29.06 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=19.5
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
+.|.|+|. .||||.+.+|+.-+ |+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~---~~~~ 29 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL---SIPQ 29 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---CCCe
Confidence 45778887 58999999998665 4544
No 280
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=37.31 E-value=38 Score=34.33 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=23.9
Q ss_pred CCcEEEEecCC---ChhhHHHHHHHHHHhc
Q 015701 42 SIKILAVTGTN---GKSTVVTFVGQMLNHL 68 (402)
Q Consensus 42 ~~~vI~VTGT~---GKTTt~~ml~~iL~~~ 68 (402)
+++.|.||||. |||+++..|.+.|+..
T Consensus 237 ~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~ 266 (476)
T PRK06278 237 KPKGIILLATGSESGKTFLTTSIAGKLRGK 266 (476)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 56789999984 9999999999999975
No 281
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=36.94 E-value=48 Score=29.20 Aligned_cols=29 Identities=31% Similarity=0.462 Sum_probs=22.0
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHH--HhcCCc
Q 015701 43 IKILAVTGTN--GKSTVVTFVGQML--NHLGIE 71 (402)
Q Consensus 43 ~~vI~VTGT~--GKTTt~~ml~~iL--~~~g~~ 71 (402)
..++++||-| ||||...+|.... ...|..
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~ 57 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNVILAQAGAP 57 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCE
Confidence 3799999987 6999999997544 445543
No 282
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=35.77 E-value=30 Score=31.65 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=25.6
Q ss_pred ceeeHHHHHH-hh-C--CCCCcEEEEec--CCChhhHHHHHHHH
Q 015701 27 RVMSELDFAA-QV-I--PRSIKILAVTG--TNGKSTVVTFVGQM 64 (402)
Q Consensus 27 ~~l~~~~~~~-~~-~--~~~~~vI~VTG--T~GKTTt~~ml~~i 64 (402)
+.+..++-+. .+ . .-..|.|+|.| +.||||+...|...
T Consensus 6 ~l~~~i~~l~~~~G~~~~i~~p~i~vvG~~~~GKSt~l~~i~g~ 49 (240)
T smart00053 6 PLVNKLQDAFSALGQEKDLDLPQIAVVGGQSAGKSSVLENFVGR 49 (240)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCeEEEEcCCCccHHHHHHHHhCC
Confidence 4445555554 22 1 13678999999 78999998888753
No 283
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=35.61 E-value=1.3e+02 Score=25.90 Aligned_cols=79 Identities=11% Similarity=0.106 Sum_probs=40.0
Q ss_pred cEEEEEcCCCCcCCCCCCcchHhhhhccccccEEEEeCCC-hHHHHHHHHhCCC--CccccccccHHHHHHHHHHhcCCC
Q 015701 294 KCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYS-GVLIWKTLVNNGL--SIPCFAVANMKDAVNHARRMATNG 370 (402)
Q Consensus 294 ~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~~d~vi~~g~~-~~~~~~~l~~~~~--~~~~~~~~~~~~ai~~~~~~~~~~ 370 (402)
+.++|.|+- ..|.++ +.++++......-.+|.+|.. ..++.+.++.... +......+.+.+....+.....++
T Consensus 1 ~~ilvtGga-RSGKS~---~AE~la~~~~~~v~YvAT~~a~D~Em~~RI~~Hr~rRp~~W~tvE~~~~l~~~L~~~~~~~ 76 (175)
T COG2087 1 MMILVTGGA-RSGKSS---FAEALAGESGGQVLYVATGRAFDDEMQERIAHHRARRPEHWRTVEAPLDLATLLEALIEPG 76 (175)
T ss_pred CeEEEecCc-cCCchH---HHHHHHHhhCCceEEEEecCCCCHHHHHHHHHHHhcCCCcceEEeccccHHHHHHhcccCC
Confidence 367888854 234333 333444332222234444443 3667777754311 223333444455555555556678
Q ss_pred CEEEEc
Q 015701 371 DAIVLS 376 (402)
Q Consensus 371 d~vll~ 376 (402)
|.||+-
T Consensus 77 ~~VLvD 82 (175)
T COG2087 77 DVVLVD 82 (175)
T ss_pred CEEEEE
Confidence 999873
No 284
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=35.33 E-value=43 Score=28.84 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=19.5
Q ss_pred CcEEEEecC--CChhhHHHHHHHHH
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL 65 (402)
.+++.|||- .||||++......|
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 577888885 57999999999998
No 285
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=35.29 E-value=59 Score=32.49 Aligned_cols=30 Identities=17% Similarity=0.141 Sum_probs=22.2
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHH--hcCCce
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQMLN--HLGIEA 72 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL~--~~g~~~ 72 (402)
..+|.+.|. .|||||+..|+..+. ..|.++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V 254 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKV 254 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeE
Confidence 357777775 579999999998876 345555
No 286
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=34.76 E-value=43 Score=35.50 Aligned_cols=36 Identities=31% Similarity=0.387 Sum_probs=29.2
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHHHhcCCceeeec
Q 015701 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (402)
Q Consensus 41 ~~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~~~g 76 (402)
-+.++++.+|- .||||+..-|+..|....+++..+|
T Consensus 436 ~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG 473 (906)
T KOG2004|consen 436 VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGG 473 (906)
T ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccc
Confidence 36789999996 6799999999999988776654444
No 287
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=34.67 E-value=55 Score=28.73 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=15.2
Q ss_pred EEEEecCC--ChhhHHHHHHHHHH
Q 015701 45 ILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 45 vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
.|.|+|.. ||||+...+...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 57788875 59999876544443
No 288
>PRK07261 topology modulation protein; Provisional
Probab=34.50 E-value=42 Score=28.72 Aligned_cols=20 Identities=35% Similarity=0.497 Sum_probs=14.7
Q ss_pred EEEecCC--ChhhHHHHHHHHH
Q 015701 46 LAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 46 I~VTGT~--GKTTt~~ml~~iL 65 (402)
|.|.|+. ||||.+..|+..+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 5666654 8999999887554
No 289
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=34.32 E-value=39 Score=27.20 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=19.5
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
+..+++|+|.| ||||...+|...+.
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCCEEEEEccCCCccccceeeeccccc
Confidence 56789999998 79988877765554
No 290
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=34.30 E-value=96 Score=28.29 Aligned_cols=55 Identities=9% Similarity=0.012 Sum_probs=39.3
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCC-------CCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcc
Q 015701 233 VLGLDIGVDVEALNSTIEILRTP-------PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMD 289 (402)
Q Consensus 233 a~~~~lgi~~~~i~~~L~~~~~~-------~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~ 289 (402)
..|...++|.+.|.++|++-.+- +-+.|.. ..+|+.+|-++...|+.-+..-++.
T Consensus 54 ~~Ak~~~~Pkd~IerAIkr~~g~~~~~~~~~~~YEg~--gP~GvaiiVe~lTDN~nRt~~~ir~ 115 (238)
T TIGR01033 54 EKAKAANMPKDNIERAIKKGAGELDGSNYEEITYEGY--APGGVAIIVECLTDNKNRTASEVRS 115 (238)
T ss_pred HHHHHhCCCHHHHHHHHHHhcCCCCccceEEEEEEEE--cCCceEEEEEEecCCHHhHHHHHHH
Confidence 77889999999999999987752 1234433 3577888888866676666555544
No 291
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=34.25 E-value=49 Score=33.94 Aligned_cols=31 Identities=32% Similarity=0.241 Sum_probs=28.2
Q ss_pred CCcEEEEecCC------ChhhHHHHHHHHHHhcCCce
Q 015701 42 SIKILAVTGTN------GKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 42 ~~~vI~VTGT~------GKTTt~~ml~~iL~~~g~~~ 72 (402)
+.+.|.||+.+ |||||+-=|.+.|...|.++
T Consensus 62 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~lgk~~ 98 (587)
T PRK13507 62 DGKYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGKKV 98 (587)
T ss_pred CCeEEEEeccCCCCCCCCccchhhhHHHHHHhhcCce
Confidence 56899999976 99999999999999999885
No 292
>COG3910 Predicted ATPase [General function prediction only]
Probab=34.17 E-value=29 Score=30.57 Aligned_cols=49 Identities=20% Similarity=0.157 Sum_probs=32.5
Q ss_pred CCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCC--ChhhHHHHHHHH
Q 015701 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTN--GKSTVVTFVGQM 64 (402)
Q Consensus 13 ~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~--GKTTt~~ml~~i 64 (402)
+++|+....-.-++|+.+.++. ++ ..+.|+-.|||-| ||+|..+-|+..
T Consensus 10 ~ekve~~~eYp~slPa~r~l~~--~L-eF~apIT~i~GENGsGKSTLLEaiA~~ 60 (233)
T COG3910 10 LEKVESFEEYPFSLPAFRHLEE--RL-EFRAPITFITGENGSGKSTLLEAIAAG 60 (233)
T ss_pred hhcccchhhCcccchHHHhhhh--hc-cccCceEEEEcCCCccHHHHHHHHHhh
Confidence 5666666555567777777765 22 1467888889987 488776666643
No 293
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=33.56 E-value=1.2e+02 Score=25.07 Aligned_cols=51 Identities=16% Similarity=0.262 Sum_probs=27.9
Q ss_pred CCChHHHHHHHHhCCCCcc-ccccc-cHHHHHHHHHHhcCCCCEEEEcCCCccc
Q 015701 331 GYSGVLIWKTLVNNGLSIP-CFAVA-NMKDAVNHARRMATNGDAIVLSPGCASF 382 (402)
Q Consensus 331 g~~~~~~~~~l~~~~~~~~-~~~~~-~~~~ai~~~~~~~~~~d~vll~~G~~s~ 382 (402)
..+...+.+.+++.|.... ...+. |.++..+.+.+.....|+|++++| .+.
T Consensus 26 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG-~g~ 78 (144)
T TIGR00177 26 DSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGG-TGV 78 (144)
T ss_pred eCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCC-CCC
Confidence 3455667777777765321 22344 444444444444456799988744 444
No 294
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=33.48 E-value=61 Score=30.75 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=20.9
Q ss_pred CCCcEEEEec--CCChhhHHHHHHHHH
Q 015701 41 RSIKILAVTG--TNGKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTG--T~GKTTt~~ml~~iL 65 (402)
++...|.++| -.||||+..+|+.-|
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 4667899998 578999999998776
No 295
>PLN02318 phosphoribulokinase/uridine kinase
Probab=33.31 E-value=45 Score=34.79 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=21.8
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
....+|+|+|-+ ||||++.+|...|.
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglLp 90 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFMP 90 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhCC
Confidence 355799999975 79999999998874
No 296
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=33.16 E-value=41 Score=29.83 Aligned_cols=26 Identities=42% Similarity=0.663 Sum_probs=19.6
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
+.+||+||+ .||||++. .|++.|+.+
T Consensus 1 M~iVGLTGgiatGKStVs~----~f~~~G~~v 28 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQ----VFKALGIPV 28 (225)
T ss_pred CeEEEeecccccChHHHHH----HHHHcCCcE
Confidence 358999997 68998765 566788765
No 297
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=32.80 E-value=46 Score=28.16 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=21.0
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
.+..+++|+|.| ||||...+|.-++.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 466799999996 79999888886654
No 298
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=32.79 E-value=59 Score=28.49 Aligned_cols=27 Identities=30% Similarity=0.731 Sum_probs=20.5
Q ss_pred cEEEEecCC--ChhhHHHHHH--HHHHhcCC
Q 015701 44 KILAVTGTN--GKSTVVTFVG--QMLNHLGI 70 (402)
Q Consensus 44 ~vI~VTGT~--GKTTt~~ml~--~iL~~~g~ 70 (402)
+++++||-| ||||...+|. .+|.+.|.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~ 59 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLGLLTLMAQSGL 59 (200)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHHcCC
Confidence 689999987 6999988877 33455564
No 299
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=32.76 E-value=82 Score=29.98 Aligned_cols=96 Identities=19% Similarity=0.189 Sum_probs=49.3
Q ss_pred CeEEEEcCCCCCHHHHHHHH------ccc--CCCcEEEEEcCCCCcCCCCCCcchHhhhhccccccEEEEeCCCh---HH
Q 015701 268 GVTWVDDSKATNLEATCTGL------MDL--KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSG---VL 336 (402)
Q Consensus 268 ~~~iidD~~a~np~s~~~al------~~~--~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~~d~vi~~g~~~---~~ 336 (402)
+.-++| +....+++.+. +.+ ++.+.+.|+|.... + ..|-+......+...|.+++... +.
T Consensus 98 p~ai~d---g~~lT~~RTaA~sala~~~La~~~~~~l~viGaG~Q-A-----~~~~~a~~~~~~i~~v~v~~r~~~~~~~ 168 (313)
T PF02423_consen 98 PLAIMD---GTWLTALRTAAVSALAARYLARPDARTLGVIGAGVQ-A-----RWHLRALAAVRPIKEVRVYSRSPERAEA 168 (313)
T ss_dssp EEEEEE---SHHHHHHHHHHHHHHHHHHHS-TT--EEEEE--SHH-H-----HHHHHHHHHHS--SEEEEE-SSHHHHHH
T ss_pred EEEEec---ccchhhhHHHHHHHHHHHHhCcCCCceEEEECCCHH-H-----HHHHHHHHHhCCceEEEEEccChhHHHH
Confidence 344555 45566666543 333 24578899986432 1 12222332333478888887765 45
Q ss_pred HHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCcc
Q 015701 337 IWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381 (402)
Q Consensus 337 ~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~~s 381 (402)
+.+.++.. ...+..++|.++|+ +.-|+|+.++.+..
T Consensus 169 ~~~~~~~~--~~~v~~~~~~~~av-------~~aDii~taT~s~~ 204 (313)
T PF02423_consen 169 FAARLRDL--GVPVVAVDSAEEAV-------RGADIIVTATPSTT 204 (313)
T ss_dssp HHHHHHCC--CTCEEEESSHHHHH-------TTSSEEEE----SS
T ss_pred HHHhhccc--cccceeccchhhhc-------ccCCEEEEccCCCC
Confidence 66666652 44677788888874 34588887766655
No 300
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=32.66 E-value=37 Score=33.58 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=18.7
Q ss_pred CCcEEEEec--CCChhhHHHHHHHHH
Q 015701 42 SIKILAVTG--TNGKSTVVTFVGQML 65 (402)
Q Consensus 42 ~~~vI~VTG--T~GKTTt~~ml~~iL 65 (402)
-.+.|+|+| +.||||.+..|+..+
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 467899988 578999998887643
No 301
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=32.58 E-value=1.2e+02 Score=24.59 Aligned_cols=48 Identities=13% Similarity=0.229 Sum_probs=26.2
Q ss_pred ChHHHHHHHHhCCCCc-cc-cccccHHHHHHHHHHhcCCCCEEEEcCCCc
Q 015701 333 SGVLIWKTLVNNGLSI-PC-FAVANMKDAVNHARRMATNGDAIVLSPGCA 380 (402)
Q Consensus 333 ~~~~~~~~l~~~~~~~-~~-~~~~~~~~ai~~~~~~~~~~d~vll~~G~~ 380 (402)
+...+.+.+++.|... .. ...+|.++..+.+.+.....|+|+.++|.+
T Consensus 19 ~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g 68 (135)
T smart00852 19 NGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTG 68 (135)
T ss_pred cHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 3455666777666421 11 123455554455545555679888875543
No 302
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=32.00 E-value=74 Score=31.75 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=22.8
Q ss_pred CcEEEEecC--CChhhHHHHHHHHH-HhcCCcee
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQML-NHLGIEAF 73 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL-~~~g~~~~ 73 (402)
.++|.++|. .|||||+.-|+.-+ ...|.++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~ 256 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVS 256 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEE
Confidence 357888875 57999999999754 45676663
No 303
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=31.99 E-value=51 Score=30.77 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=19.6
Q ss_pred EEEEecCCChhhHHHHHHHHHHhcCCc
Q 015701 45 ILAVTGTNGKSTVVTFVGQMLNHLGIE 71 (402)
Q Consensus 45 vI~VTGT~GKTTt~~ml~~iL~~~g~~ 71 (402)
++|-+| .||||-+.-|.+-|++....
T Consensus 24 VvGMAG-SGKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532|consen 24 VVGMAG-SGKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred EEecCC-CCchhHHHHHHHHHhhccCC
Confidence 445555 48999999998888887654
No 304
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=31.91 E-value=47 Score=39.22 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=19.9
Q ss_pred CcEEEEecCCChhhHHHHHHHHHHhc
Q 015701 43 IKILAVTGTNGKSTVVTFVGQMLNHL 68 (402)
Q Consensus 43 ~~vI~VTGT~GKTTt~~ml~~iL~~~ 68 (402)
.-.||=||| ||||+...|+-+|...
T Consensus 467 ~LLVGeTGt-GKTT~IQ~La~~l~~k 491 (4600)
T COG5271 467 TLLVGETGT-GKTTMIQYLALKLHFK 491 (4600)
T ss_pred eEEEecCCC-chhhHHHHHHHHhhhh
Confidence 336677886 9999999999988754
No 305
>PRK04296 thymidine kinase; Provisional
Probab=31.75 E-value=67 Score=27.96 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=18.1
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHHhcCCcee
Q 015701 44 KILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 44 ~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~ 73 (402)
.++.|||.. ||||....+..-+...|.++.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~ 34 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVL 34 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEE
Confidence 467899984 555544444444445677764
No 306
>PF12846 AAA_10: AAA-like domain
Probab=31.52 E-value=46 Score=30.73 Aligned_cols=27 Identities=33% Similarity=0.413 Sum_probs=17.7
Q ss_pred EEEEecCCChhhHHHHHHHHHHhcCCce
Q 015701 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 45 vI~VTGT~GKTTt~~ml~~iL~~~g~~~ 72 (402)
++|-|| .|||++...+..-+...|..+
T Consensus 6 i~G~tG-sGKT~~~~~l~~~~~~~g~~~ 32 (304)
T PF12846_consen 6 ILGKTG-SGKTTLLKNLLEQLIRRGPRV 32 (304)
T ss_pred EECCCC-CcHHHHHHHHHHHHHHcCCCE
Confidence 445555 379988877766666667655
No 307
>PRK13975 thymidylate kinase; Provisional
Probab=31.37 E-value=45 Score=28.87 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=19.9
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHh
Q 015701 44 KILAVTGT--NGKSTVVTFVGQMLNH 67 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL~~ 67 (402)
..|.|.|. .||||.+..|+.-|..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46888886 5899999999999864
No 308
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=31.26 E-value=70 Score=29.60 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=17.9
Q ss_pred HHHHhhCCCCCcEEEEecCC--ChhhHHHHH
Q 015701 33 DFAAQVIPRSIKILAVTGTN--GKSTVVTFV 61 (402)
Q Consensus 33 ~~~~~~~~~~~~vI~VTGT~--GKTTt~~ml 61 (402)
+.+.+......-.|.|+|.. |||||...+
T Consensus 70 ~~l~~~~~~~~GlilisG~tGSGKTT~l~al 100 (264)
T cd01129 70 EIFRKLLEKPHGIILVTGPTGSGKTTTLYSA 100 (264)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcHHHHHHHH
Confidence 33444432345588999875 788877643
No 309
>PLN02759 Formate--tetrahydrofolate ligase
Probab=31.05 E-value=69 Score=33.23 Aligned_cols=31 Identities=29% Similarity=0.249 Sum_probs=27.7
Q ss_pred CCcEEEEecCC------ChhhHHHHHHHHHHh-cCCce
Q 015701 42 SIKILAVTGTN------GKSTVVTFVGQMLNH-LGIEA 72 (402)
Q Consensus 42 ~~~vI~VTGT~------GKTTt~~ml~~iL~~-~g~~~ 72 (402)
+.+.|.||+.+ |||||+-=|.+.|.. .|.++
T Consensus 68 ~gklIlVTaitPTP~GEGKTTttIGL~~aL~~~lgk~~ 105 (637)
T PLN02759 68 DGYYVVVAGITPTPLGEGKSTTTIGLCQALGAYLDKKV 105 (637)
T ss_pred CCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHhCCee
Confidence 56899999976 999999999999997 88875
No 310
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=30.90 E-value=45 Score=34.07 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=21.0
Q ss_pred CCCCcEEEEec--CCChhhHHHHHHHH
Q 015701 40 PRSIKILAVTG--TNGKSTVVTFVGQM 64 (402)
Q Consensus 40 ~~~~~vI~VTG--T~GKTTt~~ml~~i 64 (402)
+.++|.+.|.| |.||||+.+|+++.
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqA 331 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQA 331 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHh
Confidence 35788888888 89999999999864
No 311
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=30.68 E-value=50 Score=29.35 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=25.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHcccCCCcEEEEEcCCCC
Q 015701 267 QGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304 (402)
Q Consensus 267 ~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~ 304 (402)
+.+.++|++-|.+|+.++..+.-+..+.+++++|+...
T Consensus 120 ~~~iIvDEaQN~t~~~~k~ilTR~g~~skii~~GD~~Q 157 (205)
T PF02562_consen 120 NAFIIVDEAQNLTPEELKMILTRIGEGSKIIITGDPSQ 157 (205)
T ss_dssp SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE----
T ss_pred ceEEEEecccCCCHHHHHHHHcccCCCcEEEEecCcee
Confidence 45788998888999999999998887788999997643
No 312
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=30.64 E-value=53 Score=28.16 Aligned_cols=27 Identities=30% Similarity=0.349 Sum_probs=21.3
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhc
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~~~ 68 (402)
+..+..|+|-| ||||+...|..+|...
T Consensus 18 ~~g~~vi~G~Ng~GKStil~ai~~~L~~~ 46 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTILEAIRYALGGQ 46 (202)
T ss_dssp -SEEEEEEESTTSSHHHHHHHHHHHHHSS
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 34678888876 7999999999999654
No 313
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=30.63 E-value=75 Score=22.30 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=20.1
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHHhc
Q 015701 44 KILAVTGTN--GKSTVVTFVGQMLNHL 68 (402)
Q Consensus 44 ~vI~VTGT~--GKTTt~~ml~~iL~~~ 68 (402)
++..|+|-| ||||....+..+|-..
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 478888876 6999999999888543
No 314
>PRK08534 pyruvate ferredoxin oxidoreductase subunit gamma; Reviewed
Probab=30.60 E-value=3.5e+02 Score=23.22 Aligned_cols=94 Identities=11% Similarity=0.109 Sum_probs=53.5
Q ss_pred EEEEecCCChh--hHHHHHHHHHHhcCCceeeeccCchhhhhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccE
Q 015701 45 ILAVTGTNGKS--TVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTV 122 (402)
Q Consensus 45 vI~VTGT~GKT--Tt~~ml~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i 122 (402)
.|-++|.-|-+ |+..+|+.++...|+.+.....++.... ....++-+=+|...+.......+||+
T Consensus 3 ~i~i~G~gGqGv~tag~ila~a~~~~G~~V~~~~~ygs~~R-------------GG~~~~~vris~~~i~~~~~~~~~D~ 69 (181)
T PRK08534 3 EIRFHGRGGQGAVTAAEILAKAAFEDGKFSQAFPFFGVERR-------------GAPVMAFTRIDDKPIRLRSQIYEPDY 69 (181)
T ss_pred EEEEEEECcchHHHHHHHHHHHHHhcCCeEEEEeccChhhc-------------CCcEEEEEEEcCCcccCcccCCCCCE
Confidence 45666666665 4455888888889998877676664322 12222334445444432222246788
Q ss_pred EEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEEeCC
Q 015701 123 SVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164 (402)
Q Consensus 123 ~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~n~d 164 (402)
.+..+-. +++ ...+...++++|++|+|.+
T Consensus 70 lva~~~~--------~~~-----~~~~~~~l~~gg~vi~ns~ 98 (181)
T PRK08534 70 VIVQDPT--------LLD-----SVDVTSGLKKDGIIIINTT 98 (181)
T ss_pred EEEcCHH--------Hhc-----chhHhcCcCCCcEEEEECC
Confidence 7776632 111 1122345668999999964
No 315
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=30.60 E-value=1.3e+02 Score=24.31 Aligned_cols=46 Identities=13% Similarity=0.126 Sum_probs=23.9
Q ss_pred ChHHHHHHHHhCCCCccc-cccc-cHHHHHHHHHHhcCCCCEEEEcCC
Q 015701 333 SGVLIWKTLVNNGLSIPC-FAVA-NMKDAVNHARRMATNGDAIVLSPG 378 (402)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~-~~~~-~~~~ai~~~~~~~~~~d~vll~~G 378 (402)
+...+.+.+++.|..... ..++ |.++..+.+.+..+..|+|++++|
T Consensus 20 n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG 67 (133)
T cd00758 20 NGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGG 67 (133)
T ss_pred hHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCC
Confidence 344566667666642211 1233 444444444444455798888754
No 316
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=30.19 E-value=31 Score=29.83 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=17.6
Q ss_pred cEEEEec--CCChhhHHHHHHHHHH
Q 015701 44 KILAVTG--TNGKSTVVTFVGQMLN 66 (402)
Q Consensus 44 ~vI~VTG--T~GKTTt~~ml~~iL~ 66 (402)
++|.+.| |.||||++..|...|.
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~ 26 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLP 26 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSS
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCc
Confidence 3556655 6899999999998875
No 317
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=30.07 E-value=37 Score=28.47 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=14.7
Q ss_pred EEecC--CChhhHHHHHHHHH
Q 015701 47 AVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 47 ~VTGT--~GKTTt~~ml~~iL 65 (402)
.++|- .||||++..|+..|
T Consensus 2 ~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred EEECCCCCCHHHHHHHHHHhc
Confidence 34554 49999999999876
No 318
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=30.01 E-value=3.2e+02 Score=22.74 Aligned_cols=61 Identities=10% Similarity=0.034 Sum_probs=33.6
Q ss_pred CCccEEEEEeCccc------ccCCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEEeC
Q 015701 97 PKFQVAVVEVSSYQ------MEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (402)
Q Consensus 97 ~~~~~~V~E~~~~~------l~~~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~n~ 163 (402)
.++++.++=.+... -.+.+..-+|-++|||-++.+ .+-+++.+++..+-... -.....++.
T Consensus 62 ~dad~V~ll~dat~~~~~~pP~fa~~f~~pvIGVITK~Dl~-----~~~~~i~~a~~~L~~aG-~~~if~vS~ 128 (143)
T PF10662_consen 62 QDADVVLLLQDATEPRSVFPPGFASMFNKPVIGVITKIDLP-----SDDANIERAKKWLKNAG-VKEIFEVSA 128 (143)
T ss_pred hhCCEEEEEecCCCCCccCCchhhcccCCCEEEEEECccCc-----cchhhHHHHHHHHHHcC-CCCeEEEEC
Confidence 35666777666322 123333347899999998654 24456666665554432 223455554
No 319
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=29.97 E-value=54 Score=31.67 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=21.2
Q ss_pred HHHhhCCCCCcEEEEecCCC--hhhHHHHHHHHH
Q 015701 34 FAAQVIPRSIKILAVTGTNG--KSTVVTFVGQML 65 (402)
Q Consensus 34 ~~~~~~~~~~~vI~VTGT~G--KTTt~~ml~~iL 65 (402)
.+.++..++...|.|+|..| ||||...+..-+
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~al~~~i 146 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLASMIDYI 146 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 33444323557899999876 999987665443
No 320
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=29.69 E-value=98 Score=30.68 Aligned_cols=131 Identities=14% Similarity=0.127 Sum_probs=74.1
Q ss_pred ceeeHHHHHHhhCC---CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCceeeeccCchhhhhhhhhhccCCCCCCCccE
Q 015701 27 RVMSELDFAAQVIP---RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQV 101 (402)
Q Consensus 27 ~~l~~~~~~~~~~~---~~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 101 (402)
++-+..+-+.|.+- =+.-+|.|.|-- ||||+.--+++-|.+.+...+.+|-=..---..+...+.. ..+.-+
T Consensus 74 Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~---~~~~l~ 150 (456)
T COG1066 74 RISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGL---PTNNLY 150 (456)
T ss_pred cccCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCC---CccceE
Confidence 34444555555541 134689999976 6999888888888888833355553110000001110110 112224
Q ss_pred EEEEeCcccccCCCccccccEEEEecCCcchhcCC----CCHHHHHHHHHHhccccCCCeEEE
Q 015701 102 AVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH----KTMKNYALTKCHLFSHMVNTKLGL 160 (402)
Q Consensus 102 ~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~~~----~t~e~i~~~k~~i~~~~~~~~~~v 160 (402)
..-|+.-..+...-...+|++.||=+|..=|.+.. +|..++.+.-.++++..+..++++
T Consensus 151 l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~ 213 (456)
T COG1066 151 LLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAI 213 (456)
T ss_pred EehhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeE
Confidence 56676633322111126899999999986555443 688888888777777655555443
No 321
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=29.68 E-value=57 Score=36.67 Aligned_cols=31 Identities=26% Similarity=0.391 Sum_probs=24.7
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcCCcee
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
-++..|+|- .||||+...+..+++..|+++.
T Consensus 397 ~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~ 429 (1102)
T PRK13826 397 ARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVV 429 (1102)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 355666664 4799999999999999998873
No 322
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=29.48 E-value=63 Score=33.09 Aligned_cols=24 Identities=42% Similarity=0.548 Sum_probs=20.6
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
...+|+|.|.+ ||||++.+|+.-|
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l 308 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKL 308 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 55799999974 7999999999887
No 323
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=29.41 E-value=80 Score=34.03 Aligned_cols=31 Identities=23% Similarity=0.212 Sum_probs=23.2
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHH-hcC-Ccee
Q 015701 43 IKILAVTGTN--GKSTVVTFVGQMLN-HLG-IEAF 73 (402)
Q Consensus 43 ~~vI~VTGT~--GKTTt~~ml~~iL~-~~g-~~~~ 73 (402)
..+|++.|.| |||||...|+..+. ..| .++.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~ 219 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLA 219 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEE
Confidence 4578888876 69999999998884 455 3553
No 324
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=29.28 E-value=82 Score=30.86 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=20.7
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH-hcC
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLN-HLG 69 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~-~~g 69 (402)
+..++++.|.+ |||||...|+.-+. ..|
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G 166 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFG 166 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 44677788875 69999999998654 335
No 325
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=29.19 E-value=52 Score=27.58 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=17.0
Q ss_pred EEEEecCC--ChhhHHHHHHHHH
Q 015701 45 ILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 45 vI~VTGT~--GKTTt~~ml~~iL 65 (402)
+|.|+|.. ||||++..|+.-|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68888874 7999999888765
No 326
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=28.75 E-value=34 Score=32.34 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=18.7
Q ss_pred ecCCChhhHHHHHHHHHHhcC
Q 015701 49 TGTNGKSTVVTFVGQMLNHLG 69 (402)
Q Consensus 49 TGT~GKTTt~~ml~~iL~~~g 69 (402)
.|.+||||...+|..++....
T Consensus 84 ~g~nGKStl~~~l~~l~G~~~ 104 (304)
T TIGR01613 84 NGGNGKSTFQNLLSNLLGDYA 104 (304)
T ss_pred CCCCcHHHHHHHHHHHhChhh
Confidence 689999999999999997654
No 327
>PRK13946 shikimate kinase; Provisional
Probab=28.69 E-value=59 Score=28.04 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=18.2
Q ss_pred cEEEEec--CCChhhHHHHHHHHH
Q 015701 44 KILAVTG--TNGKSTVVTFVGQML 65 (402)
Q Consensus 44 ~vI~VTG--T~GKTTt~~ml~~iL 65 (402)
+.|.++| -.||||+..+|+.-|
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 4677777 468999999999888
No 328
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=28.60 E-value=90 Score=29.94 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=20.6
Q ss_pred HHHHHhhCCCCCcEEEEec--CCChhhHHHHHHHHH
Q 015701 32 LDFAAQVIPRSIKILAVTG--TNGKSTVVTFVGQML 65 (402)
Q Consensus 32 ~~~~~~~~~~~~~vI~VTG--T~GKTTt~~ml~~iL 65 (402)
.+++.... +....|.|+| ..||||+...|...+
T Consensus 134 ~~~L~~~v-~~~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 134 ASVIRSAI-DSRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred HHHHHHHH-HcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45555555 3445677887 468999886655444
No 329
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=28.53 E-value=67 Score=27.77 Aligned_cols=28 Identities=36% Similarity=0.609 Sum_probs=18.6
Q ss_pred EEEEecCC--ChhhHHHHHH--HHHHhcCCce
Q 015701 45 ILAVTGTN--GKSTVVTFVG--QMLNHLGIEA 72 (402)
Q Consensus 45 vI~VTGT~--GKTTt~~ml~--~iL~~~g~~~ 72 (402)
++.|||.| ||||....+. .+|.+.|.-+
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v 32 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFV 32 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCe
Confidence 36799987 5777776665 3445666544
No 330
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=28.42 E-value=53 Score=25.92 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=16.6
Q ss_pred EEEecC--CChhhHHHHHHHHHH
Q 015701 46 LAVTGT--NGKSTVVTFVGQMLN 66 (402)
Q Consensus 46 I~VTGT--~GKTTt~~ml~~iL~ 66 (402)
|.+.|- .|||+++..+++.|.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 345666 799999999998873
No 331
>PRK04182 cytidylate kinase; Provisional
Probab=28.36 E-value=54 Score=27.74 Aligned_cols=21 Identities=33% Similarity=0.719 Sum_probs=17.2
Q ss_pred EEEEecC--CChhhHHHHHHHHH
Q 015701 45 ILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 45 vI~VTGT--~GKTTt~~ml~~iL 65 (402)
+|.|+|. .||||++..|+.-|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 5778886 57999999998765
No 332
>PRK00023 cmk cytidylate kinase; Provisional
Probab=28.20 E-value=61 Score=29.17 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=19.2
Q ss_pred CcEEEEecC--CChhhHHHHHHHHH
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL 65 (402)
..+|+|+|. .||||++.+|+.-|
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~ 28 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKL 28 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999997 48999999998766
No 333
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=28.19 E-value=60 Score=30.37 Aligned_cols=35 Identities=29% Similarity=0.348 Sum_probs=25.2
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCceeeec
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~~~g 76 (402)
+..++++-|-| |||||..||.-++.-.+=.|...|
T Consensus 49 ~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G 85 (325)
T COG4586 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNG 85 (325)
T ss_pred CCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecC
Confidence 44689999988 599999999988765443443333
No 334
>PRK07589 ornithine cyclodeaminase; Validated
Probab=27.97 E-value=3.2e+02 Score=26.43 Aligned_cols=95 Identities=17% Similarity=0.125 Sum_probs=52.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHH------ccc--CCCcEEEEEcCCCCcCCCCCCcchHhhhhccccccEEEEeCCChH---
Q 015701 267 QGVTWVDDSKATNLEATCTGL------MDL--KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGV--- 335 (402)
Q Consensus 267 ~~~~iidD~~a~np~s~~~al------~~~--~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~~d~vi~~g~~~~--- 335 (402)
.+.-++| ++...+++.+. +.+ ++.+.+.|+|+... +. .+-+....+.+.+.|.+++...+
T Consensus 98 ~p~Alld---g~~lT~~RTaA~sala~~~Lar~da~~l~iiGaG~Q-A~-----~~l~a~~~vr~i~~V~v~~r~~~~a~ 168 (346)
T PRK07589 98 YPLLLSE---MTLLTALRTAATSALAAKYLARPDSRTMALIGNGAQ-SE-----FQALAFKALLGIEEIRLYDIDPAATA 168 (346)
T ss_pred CEEEEEc---CccHHHHHHHHHHHHHHHHhccCCCcEEEEECCcHH-HH-----HHHHHHHHhCCceEEEEEeCCHHHHH
Confidence 3445555 55666666643 334 24578899986432 11 12222222335778888876643
Q ss_pred HHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCC
Q 015701 336 LIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 379 (402)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~ 379 (402)
.+.+.+++.+ ..+..+++.+++++. -|+|+.++.|
T Consensus 169 ~~~~~~~~~~--~~v~~~~~~~~av~~-------ADIIvtaT~S 203 (346)
T PRK07589 169 KLARNLAGPG--LRIVACRSVAEAVEG-------ADIITTVTAD 203 (346)
T ss_pred HHHHHHHhcC--CcEEEeCCHHHHHhc-------CCEEEEecCC
Confidence 4555565433 245567787777544 4777766544
No 335
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=27.96 E-value=70 Score=27.23 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=18.5
Q ss_pred cEEEEecC--CChhhHHHHHHHHHH
Q 015701 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL~ 66 (402)
++|.++|. .||||.+..|...+.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 57777774 689999999988764
No 336
>PRK06851 hypothetical protein; Provisional
Probab=27.92 E-value=76 Score=31.00 Aligned_cols=31 Identities=26% Similarity=0.476 Sum_probs=26.7
Q ss_pred CCcEEEEec--CCChhhHHHHHHHHHHhcCCce
Q 015701 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 42 ~~~vI~VTG--T~GKTTt~~ml~~iL~~~g~~~ 72 (402)
..+++.++| ..||||+..-+...+...|+.+
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~V 61 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDV 61 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 447899999 6789999999999998888876
No 337
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=27.90 E-value=1.1e+02 Score=28.60 Aligned_cols=64 Identities=11% Similarity=0.125 Sum_probs=46.6
Q ss_pred HHHHcCCCHHHHHHHhhcCCCC----CCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccC--CCcEEEEEcCC
Q 015701 234 LGLDIGVDVEALNSTIEILRTP----PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQ 302 (402)
Q Consensus 234 ~~~~lgi~~~~i~~~L~~~~~~----~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~--~~~~i~V~g~~ 302 (402)
-.+..|-+..++++-|+.|+.. ..||=++. .+|..+.| +...+++...+..+. +-+.|+|.|+.
T Consensus 8 ~~~~~~~~~~e~~~~l~~f~~~~~~~~~~f~VIK--~GG~~~~~---~~~~~~l~~dla~L~~lGl~~VlVHGgg 77 (271)
T cd04236 8 FLHQKGGDPREARYWLTQFQIAMPNDWPAFAVLE--VDHSVFRS---LEMVQSLSFGLAFLQRMDMKLLVVMGLS 77 (271)
T ss_pred HHHHhCCCHHHHHHHHHHhhccCCCCCCCEEEEE--EChhhhcC---chhHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4567899999999999999975 37999994 56654433 345666666665553 46789999864
No 338
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.87 E-value=63 Score=27.63 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=21.2
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
.+..+++|.|-| ||||...+|.-++.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366799999997 89998888886654
No 339
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=27.67 E-value=2.3e+02 Score=27.04 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=51.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHH------ccc--CCCcEEEEEcCCCCcCCCCCCcchHhhhhccccccEEEEeCCChH---
Q 015701 267 QGVTWVDDSKATNLEATCTGL------MDL--KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGV--- 335 (402)
Q Consensus 267 ~~~~iidD~~a~np~s~~~al------~~~--~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~~d~vi~~g~~~~--- 335 (402)
.+.-++| ++...+++.+. +.+ ++.+.+.|+|+... +. .+...+.. ..+.+.+.+++...+
T Consensus 97 ~p~ai~d---~~~lT~~RTaA~salaa~~La~~~~~~lgiiG~G~q-A~----~~l~al~~-~~~~~~v~V~~r~~~~~~ 167 (325)
T TIGR02371 97 FPIALMD---GTYITDMRTGAAGGVAAKYLARKDSSVLGIIGAGRQ-AW----TQLEALSR-VFDLEEVSVYCRTPSTRE 167 (325)
T ss_pred CeEEEEe---CcchhhHHHHHHHHHHHHHhCCCCCCEEEEECCCHH-HH----HHHHHHHh-cCCCCEEEEECCCHHHHH
Confidence 3445554 44555555432 444 24578889985422 21 11222322 334677877766543
Q ss_pred HHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCc
Q 015701 336 LIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 380 (402)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~~ 380 (402)
.+.+.+++.+ ..+..+.+.+++++ .-|+|+.++.+.
T Consensus 168 ~~~~~~~~~g--~~v~~~~~~~eav~-------~aDiVitaT~s~ 203 (325)
T TIGR02371 168 KFALRASDYE--VPVRAATDPREAVE-------GCDILVTTTPSR 203 (325)
T ss_pred HHHHHHHhhC--CcEEEeCCHHHHhc-------cCCEEEEecCCC
Confidence 3445554333 24556778888753 458887765443
No 340
>PRK14530 adenylate kinase; Provisional
Probab=27.56 E-value=64 Score=28.60 Aligned_cols=27 Identities=22% Similarity=0.387 Sum_probs=19.8
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCcee
Q 015701 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
+.|.|.|. .||||.+..|+..+ |+.+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~---~~~~i 32 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF---GVEHV 32 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh---CCeEE
Confidence 45777776 47999999998776 55443
No 341
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=27.41 E-value=68 Score=27.57 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=18.6
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHH
Q 015701 44 KILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 44 ~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
.++.++|.+ ||||....|..+|.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567788875 79999999998874
No 342
>PF04693 DDE_Tnp_2: Archaeal putative transposase ISC1217; InterPro: IPR006783 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element. Transposases have been grouped into various families [, , ]. This family includes the putative transposase ISC1217 from archaebacteria. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=27.22 E-value=59 Score=30.64 Aligned_cols=45 Identities=24% Similarity=0.416 Sum_probs=31.7
Q ss_pred HHcCCCHHHHHHHhhcCCCCCCceeEEEeecCC---eEEEEcCCCCCHH
Q 015701 236 LDIGVDVEALNSTIEILRTPPHRMQIVHRDIQG---VTWVDDSKATNLE 281 (402)
Q Consensus 236 ~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~---~~iidD~~a~np~ 281 (402)
..+|++-+.+.+.|.+.... +=++.+..-..+ +.||||++.|..-
T Consensus 51 ~~~g~dY~~~Lk~Ld~la~~-~~~~~vk~~v~~~~v~vIiDDt~dhk~y 98 (327)
T PF04693_consen 51 QTFGMDYENLLKNLDKLANA-DLLEAVKKVVKGHPVVVIIDDTVDHKLY 98 (327)
T ss_pred HHhCccHHHHHHHhhhhhcc-CchhhhhhhccCCceEEEEecccchhhh
Confidence 44689999999999887643 566666432233 7899999877643
No 343
>PRK10536 hypothetical protein; Provisional
Probab=27.15 E-value=1.7e+02 Score=27.11 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=40.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHcccCCCcEEEEEcCCCCcCCC-CCCcchHhhhhcccc
Q 015701 267 QGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG-QESNGFEKLIEPLNH 323 (402)
Q Consensus 267 ~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~-~~~~~~~~~~~~l~~ 323 (402)
+.++|+|++.+-+|.-+...+..++.+..+++.|+...-+.. ...+.+..+.+.+..
T Consensus 177 ~~~vIvDEaqn~~~~~~k~~ltR~g~~sk~v~~GD~~QiD~p~~~~sGL~~~~~~~k~ 234 (262)
T PRK10536 177 NAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQCDLPRGVKSGLSDALERFEE 234 (262)
T ss_pred CCEEEEechhcCCHHHHHHHHhhcCCCCEEEEeCChhhccCCCCCCCCHHHHHHHhCC
Confidence 568899988888999999999999877788889976433221 112355556666653
No 344
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=27.07 E-value=66 Score=32.42 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=18.2
Q ss_pred EEEecCCChhhHHHHHHHHHHhcCCcee
Q 015701 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 46 I~VTGT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
|++-| +|||||+..|..++ |+.+.
T Consensus 380 ia~ig-cgktt~ak~l~~lf---~w~~v 403 (758)
T COG5324 380 IATIG-CGKTTVAKILEKLF---GWPVV 403 (758)
T ss_pred EEEec-cCcccHHHHHHHHc---CCccc
Confidence 45555 79999999999888 55553
No 345
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=26.97 E-value=63 Score=28.54 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=21.2
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
.+..+++|.|-| ||||...+|.-++.
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 366799999997 89999888886653
No 346
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=26.95 E-value=62 Score=28.32 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=20.3
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+..+++|+|.| ||||...+|+-++
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 466799999997 7999988887554
No 347
>COG5623 CLP1 Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
Probab=26.89 E-value=75 Score=30.13 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=23.3
Q ss_pred CCcEEEEec--CCChhhHHHHHHHHHHhcCCce
Q 015701 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 42 ~~~vI~VTG--T~GKTTt~~ml~~iL~~~g~~~ 72 (402)
..|.+.|.| ++||||.+..|.+..-..|+.+
T Consensus 98 ~gp~v~vvGgsq~Gkts~~~tL~syalk~~~~p 130 (424)
T COG5623 98 KGPTVMVVGGSQNGKTSFCFTLISYALKLGKKP 130 (424)
T ss_pred cCCEEEEECCCcCCceeHHHHHHHHHHHhcCCc
Confidence 467777777 6999999988777665557664
No 348
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=26.85 E-value=68 Score=28.74 Aligned_cols=31 Identities=39% Similarity=0.560 Sum_probs=22.1
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHHhcCCceeeecc
Q 015701 44 KILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGN 77 (402)
Q Consensus 44 ~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~~~g~ 77 (402)
.+|+|+|.+ ||||++.+|+.-| |+.+...|.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~---~~~~~~~g~ 35 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKL---GYAYLDSGA 35 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CCceeeCch
Confidence 579999875 7999999998755 444433343
No 349
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=26.70 E-value=84 Score=28.51 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=25.6
Q ss_pred CcEEEEec--CCChhhHHHHHHHHHHhcCCc
Q 015701 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIE 71 (402)
Q Consensus 43 ~~vI~VTG--T~GKTTt~~ml~~iL~~~g~~ 71 (402)
++.|.||| ..||||-+.-|...|.+.|.+
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K 31 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTK 31 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhccc
Confidence 46788998 689999999999999999854
No 350
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=26.64 E-value=1.5e+02 Score=25.43 Aligned_cols=46 Identities=20% Similarity=0.370 Sum_probs=24.6
Q ss_pred hHHHHHHHHhCCCCc-cccccccHHHHHHH-HHHhcCCCCEEEEcCCC
Q 015701 334 GVLIWKTLVNNGLSI-PCFAVANMKDAVNH-ARRMATNGDAIVLSPGC 379 (402)
Q Consensus 334 ~~~~~~~l~~~~~~~-~~~~~~~~~~ai~~-~~~~~~~~d~vll~~G~ 379 (402)
...+.+.++..|... .+..++|-.+.+.. +....+..|+|++++|.
T Consensus 21 ~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~ 68 (170)
T cd00885 21 AAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGL 68 (170)
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCC
Confidence 455667777666532 12234444443444 33344567888887554
No 351
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=26.62 E-value=97 Score=32.11 Aligned_cols=31 Identities=39% Similarity=0.424 Sum_probs=27.6
Q ss_pred CCcEEEEecCC------ChhhHHHHHHHHHH-hcCCce
Q 015701 42 SIKILAVTGTN------GKSTVVTFVGQMLN-HLGIEA 72 (402)
Q Consensus 42 ~~~vI~VTGT~------GKTTt~~ml~~iL~-~~g~~~ 72 (402)
+.+.|.||+.+ |||||+-=|.+.|. ..|.++
T Consensus 67 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~~lgk~~ 104 (625)
T PTZ00386 67 NGKYVVVAGMNPTPLGEGKSTTTIGLAQSLGAHLHRKT 104 (625)
T ss_pred CCcEEEEeecCCCCCCCCccchhhhhHHHHHHHhCcce
Confidence 56899999976 99999999999999 688875
No 352
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=26.54 E-value=65 Score=28.90 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=21.5
Q ss_pred cEEEEecCCChhhHHHHHHHHHHhcCCce
Q 015701 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 44 ~vI~VTGT~GKTTt~~ml~~iL~~~g~~~ 72 (402)
-|+|.+|| ||+|-|+-+.+=.+..|.++
T Consensus 7 lV~GpAgS-GKSTyC~~~~~h~e~~gRs~ 34 (273)
T KOG1534|consen 7 LVMGPAGS-GKSTYCSSMYEHCETVGRSV 34 (273)
T ss_pred EEEccCCC-CcchHHHHHHHHHHhhCcee
Confidence 36777775 99999988877777778765
No 353
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=26.44 E-value=1.2e+02 Score=28.36 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=25.9
Q ss_pred CCcEEEEec--CCChhhHHHHHHHHHHhcCCceee
Q 015701 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 42 ~~~vI~VTG--T~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
+.++|++.| ..||||+...|+..+...+.++..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~ 108 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGF 108 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEE
Confidence 447889986 567999999999998877766643
No 354
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=26.30 E-value=65 Score=34.18 Aligned_cols=62 Identities=19% Similarity=0.249 Sum_probs=40.2
Q ss_pred CCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecC--CChhhHHHHHHHHHHhcCCceeeec
Q 015701 12 QLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (402)
Q Consensus 12 ~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~~~g 76 (402)
..||=.|....+ +++..++...+.-..+.++++..|- .||||...-|+..|.....+..++|
T Consensus 322 d~dHYGLekVKe---RIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGG 385 (782)
T COG0466 322 DKDHYGLEKVKE---RILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGG 385 (782)
T ss_pred cccccCchhHHH---HHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCc
Confidence 345555555555 3333333333332235689999996 6799999999999987766655555
No 355
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=26.28 E-value=62 Score=29.22 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=17.9
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 45 vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
+|+|||- .||||++.++ .+.|..+
T Consensus 2 iI~i~G~~gsGKstva~~~----~~~g~~~ 27 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFI----IENYNAV 27 (227)
T ss_pred EEEEeCCCCCCHHHHHHHH----HhcCCcE
Confidence 7999996 5899988877 4456554
No 356
>PRK11914 diacylglycerol kinase; Reviewed
Probab=26.26 E-value=77 Score=29.89 Aligned_cols=14 Identities=14% Similarity=-0.035 Sum_probs=8.5
Q ss_pred CcEEEEEcCCCCcC
Q 015701 293 HKCVILLGGQAKVL 306 (402)
Q Consensus 293 ~~~i~V~g~~~~~~ 306 (402)
+|+.+|+...+.++
T Consensus 9 ~~~~iI~NP~sG~g 22 (306)
T PRK11914 9 GKVTVLTNPLSGHG 22 (306)
T ss_pred ceEEEEECCCCCCC
Confidence 56677776665443
No 357
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=26.16 E-value=70 Score=28.42 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=18.7
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHH
Q 015701 43 IKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 43 ~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
..++++-|.| ||||+-.+|..++
T Consensus 25 ~~i~~ivGpNGaGKSTll~~i~~~~ 49 (212)
T cd03274 25 KSFSAIVGPNGSGKSNVIDSMLFVF 49 (212)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999998 6999999987553
No 358
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=26.04 E-value=76 Score=26.76 Aligned_cols=21 Identities=38% Similarity=0.381 Sum_probs=16.5
Q ss_pred EEEEec--CCChhhHHHHHHHHH
Q 015701 45 ILAVTG--TNGKSTVVTFVGQML 65 (402)
Q Consensus 45 vI~VTG--T~GKTTt~~ml~~iL 65 (402)
.|.++| ..||||++..|+.-|
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 466666 358999999999877
No 359
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=25.95 E-value=69 Score=27.63 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=19.9
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+..+++|+|-| ||||...+|.-++
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999997 5999888887554
No 360
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=25.89 E-value=63 Score=34.68 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=19.8
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHH
Q 015701 44 KILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 44 ~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
.+|+|+|+. ||||++..|+..|.
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~ 26 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLG 26 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 479999985 69999999998873
No 361
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=25.88 E-value=1.9e+02 Score=27.35 Aligned_cols=118 Identities=14% Similarity=0.134 Sum_probs=69.8
Q ss_pred CCCcEEEEecCCChhhHHHHHHHHHHhcCCce---eee--ccCchhhhhhhhhhccCCCCCCCccEEEEEeC-cccccCC
Q 015701 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA---FVG--GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVS-SYQMEIP 114 (402)
Q Consensus 41 ~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~---~~~--g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~-~~~l~~~ 114 (402)
++.+++-|++-+|- .+-.+|.+....+ .+. ..+++-.....++ ...=.+++=+|.+ ....+..
T Consensus 135 ~pvrIlDIAaG~GR-----YvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~------~~gL~~i~~f~~~dAfd~~~l 203 (311)
T PF12147_consen 135 RPVRILDIAAGHGR-----YVLDALEKHPERPDSILLRDYSPINVEKGRALIA------ERGLEDIARFEQGDAFDRDSL 203 (311)
T ss_pred CceEEEEeccCCcH-----HHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHH------HcCCccceEEEecCCCCHhHh
Confidence 56778888888874 3445555554321 110 0011111111111 0111234567766 3333222
Q ss_pred C-ccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEEeCC--ChhhHHHhh
Q 015701 115 N-KYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG--NQHLNEAIK 173 (402)
Q Consensus 115 ~-~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~n~d--d~~~~~~~~ 173 (402)
. ...+|+++|+.-+ .|.|++-+-+.+...++-..++++|.+|+-.. -|.+..++.
T Consensus 204 ~~l~p~P~l~iVsGL----~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr 261 (311)
T PF12147_consen 204 AALDPAPTLAIVSGL----YELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIAR 261 (311)
T ss_pred hccCCCCCEEEEecc----hhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHH
Confidence 2 2357999999998 47888888898899999988999999999774 355544443
No 362
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.80 E-value=69 Score=28.20 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=19.8
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+..+++|+|-| ||||...+|.-++
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 466799999997 6999888877554
No 363
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=25.66 E-value=50 Score=31.08 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=22.3
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHh
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~~ 67 (402)
++..++++-|-| ||||+..||..+++.
T Consensus 29 ~~Gei~gllG~NGAGKTTllk~l~gl~~p 57 (293)
T COG1131 29 EPGEIFGLLGPNGAGKTTLLKILAGLLKP 57 (293)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 356799999999 599999999877754
No 364
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=25.63 E-value=1.4e+02 Score=30.81 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=20.7
Q ss_pred CCcEEEEec--CCChhhHHHHHHHHHHhc
Q 015701 42 SIKILAVTG--TNGKSTVVTFVGQMLNHL 68 (402)
Q Consensus 42 ~~~vI~VTG--T~GKTTt~~ml~~iL~~~ 68 (402)
...+|+++| -.|||||...|+..+...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 456888886 468999999998876543
No 365
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=25.58 E-value=1.4e+02 Score=25.26 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=23.6
Q ss_pred ChHHHHHHHHhCCCCcc-ccccccHHHHHHHHHHhc---CCCCEEEEcCC
Q 015701 333 SGVLIWKTLVNNGLSIP-CFAVANMKDAVNHARRMA---TNGDAIVLSPG 378 (402)
Q Consensus 333 ~~~~~~~~l~~~~~~~~-~~~~~~~~~ai~~~~~~~---~~~d~vll~~G 378 (402)
+...+...+++.|.... ...++|-.+.+..+.+.+ +..|+|++++|
T Consensus 23 n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGG 72 (163)
T TIGR02667 23 SGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGG 72 (163)
T ss_pred cHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 34455666666664221 223344444444443332 46799988744
No 366
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=25.53 E-value=64 Score=28.41 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=23.7
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhcC
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLG 69 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~~~g 69 (402)
...-.+-|+|-| ||||.-++|+-+++-..
T Consensus 26 ~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~ 56 (209)
T COG4133 26 NAGEALQITGPNGAGKTTLLRILAGLLRPDA 56 (209)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcccCCCC
Confidence 355689999998 59999999999987643
No 367
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=25.46 E-value=96 Score=26.51 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=21.7
Q ss_pred EEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 46 LAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 46 I~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
|.+||- .||||...-+.+.|+..|..+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 678886 479999999999998877765
No 368
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=25.43 E-value=84 Score=25.85 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=26.4
Q ss_pred hHHHHHHHHhCCCCc-ccccc-ccHHHHHHHHHHhcCCCCEEEEcCCC
Q 015701 334 GVLIWKTLVNNGLSI-PCFAV-ANMKDAVNHARRMATNGDAIVLSPGC 379 (402)
Q Consensus 334 ~~~~~~~l~~~~~~~-~~~~~-~~~~~ai~~~~~~~~~~d~vll~~G~ 379 (402)
...+.+.+++.|... ...++ +|.++..+.+...+...|+|+.++|.
T Consensus 19 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~VittGG~ 66 (144)
T PF00994_consen 19 GPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDRADLVITTGGT 66 (144)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHTTSEEEEESSS
T ss_pred HHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhccCCEEEEcCCc
Confidence 345667777666522 12233 44555444454555677999987554
No 369
>PRK12378 hypothetical protein; Provisional
Probab=25.41 E-value=2.3e+02 Score=25.74 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=37.2
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCCCC------ceeEEEeecCCeEEEEcCCCCCHHHHHHHHcc
Q 015701 233 VLGLDIGVDVEALNSTIEILRTPPH------RMQIVHRDIQGVTWVDDSKATNLEATCTGLMD 289 (402)
Q Consensus 233 a~~~~lgi~~~~i~~~L~~~~~~~g------R~e~~~~~~~~~~iidD~~a~np~s~~~al~~ 289 (402)
..|...++|.+.|.++|++-.+..+ ++|.. ..+|+.||-++.-.|..-+.+-++.
T Consensus 52 ~~Ak~~nmPkd~IerAIkk~~g~~~~~~~e~~YEgy--gPgGvaiiVe~lTDN~nRt~~~vr~ 112 (235)
T PRK12378 52 ERAKKANVPKDVIERAIKKAKGGGGEDYEEVRYEGF--GPNGVMVIVECLTDNVNRTVANVRS 112 (235)
T ss_pred HHHHHhCCCHHHHHHHHHhccCCCCCceEEEEEEEE--cCCCcEEEEEECCCCHHHHHHHHHH
Confidence 7788999999999999998765322 23333 3577888888855565554444433
No 370
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=25.31 E-value=69 Score=28.11 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=19.5
Q ss_pred EEEEecCC--ChhhHHHHHHHHHHh
Q 015701 45 ILAVTGTN--GKSTVVTFVGQMLNH 67 (402)
Q Consensus 45 vI~VTGT~--GKTTt~~ml~~iL~~ 67 (402)
+++|.|.| ||||+..+|..++..
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~~~ 48 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVLGE 48 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhcc
Confidence 88999998 699999999877743
No 371
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=25.27 E-value=1.1e+02 Score=27.84 Aligned_cols=55 Identities=9% Similarity=0.049 Sum_probs=38.1
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCC-------CCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcc
Q 015701 233 VLGLDIGVDVEALNSTIEILRTP-------PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMD 289 (402)
Q Consensus 233 a~~~~lgi~~~~i~~~L~~~~~~-------~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~ 289 (402)
..|...++|.+.|.++|++..+. .-++|.. ..+|+.+|-++...|..-+..-++.
T Consensus 50 ~~Ak~~nmPk~~IerAIkk~~~~~~~~~~~~~~yEg~--gP~Gvaiive~lTDN~nRt~~~ir~ 111 (234)
T PF01709_consen 50 EKAKKANMPKDNIERAIKKASGKSDGANYEEITYEGY--GPGGVAIIVECLTDNKNRTVSDIRS 111 (234)
T ss_dssp HHHHHTT--HHHHHHHHHHCCSTSST---EEEEEEEE--ETTTEEEEEEEEES-HHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHhcCcCCCCcCceEEEEEEE--cCCCcEEEEEEeCCCHhHHHHHHHH
Confidence 78889999999999999988753 2345555 3578888888866777766665554
No 372
>PRK14709 hypothetical protein; Provisional
Probab=25.25 E-value=53 Score=33.29 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.5
Q ss_pred ecCCChhhHHHHHHHHHHhcC
Q 015701 49 TGTNGKSTVVTFVGQMLNHLG 69 (402)
Q Consensus 49 TGT~GKTTt~~ml~~iL~~~g 69 (402)
+|.|||||...+|..+|....
T Consensus 213 ~G~NGKSt~~~~i~~llG~~~ 233 (469)
T PRK14709 213 GGGNGKSVFLNVLAGILGDYA 233 (469)
T ss_pred CCCCcHHHHHHHHHHHHhhhc
Confidence 688999999999999997643
No 373
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=25.25 E-value=2.3e+02 Score=26.93 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=44.8
Q ss_pred CHHHHHHHHcccCCCcEEEEEcCCCCcCCCCCCcchHhhhhcccc--ccEEEEeCCChHHHHHHHHhCCCCccccccccH
Q 015701 279 NLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH--HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANM 356 (402)
Q Consensus 279 np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~--~d~vi~~g~~~~~~~~~l~~~~~~~~~~~~~~~ 356 (402)
=+++++.+-+.+-.+|..+|.| .+|.|..+ ++.+.. +.++++--.+...++..+. | +....+
T Consensus 200 l~DgikraTDvM~aGKv~Vv~G-YGdVGKgC--------aqaLkg~g~~VivTEiDPI~ALQAaMe--G-----~~V~tm 263 (434)
T KOG1370|consen 200 LLDGIKRATDVMIAGKVAVVCG-YGDVGKGC--------AQALKGFGARVIVTEIDPICALQAAME--G-----YEVTTL 263 (434)
T ss_pred hhhhhhhhhhheecccEEEEec-cCccchhH--------HHHHhhcCcEEEEeccCchHHHHHHhh--c-----cEeeeH
Confidence 3566666666655567666665 55555444 223332 4444444344455555553 2 223456
Q ss_pred HHHHHHHHHhcCCCCEEEEcCCCccc
Q 015701 357 KDAVNHARRMATNGDAIVLSPGCASF 382 (402)
Q Consensus 357 ~~ai~~~~~~~~~~d~vll~~G~~s~ 382 (402)
+||+ +++|+++-++|+-++
T Consensus 264 ~ea~-------~e~difVTtTGc~di 282 (434)
T KOG1370|consen 264 EEAI-------REVDIFVTTTGCKDI 282 (434)
T ss_pred HHhh-------hcCCEEEEccCCcch
Confidence 6663 467888888887554
No 374
>PRK08338 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=25.19 E-value=4.2e+02 Score=22.44 Aligned_cols=143 Identities=16% Similarity=0.130 Sum_probs=79.5
Q ss_pred EEEecCCChh--hHHHHHHHHHHhcCCceeeeccCchhhhhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEE
Q 015701 46 LAVTGTNGKS--TVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVS 123 (402)
Q Consensus 46 I~VTGT~GKT--Tt~~ml~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~ 123 (402)
|-++|.-|-+ |+..+|+..+...|+.+.....+|... ....-++-+=+|........ .-+||+.
T Consensus 3 i~i~G~gGqGv~tag~ila~aa~~~G~~v~~~~~ygs~~-------------RGG~~~~~vris~~~i~s~~-~~~~D~l 68 (170)
T PRK08338 3 IRFAGIGGQGVVLAGVILGEAAAIEGLNVLQTQDYSSAS-------------RGGHSIADVIISKEPIYDVM-VTKADVL 68 (170)
T ss_pred EEEEEECcHHHHHHHHHHHHHHHHcCCCEEEccccChhh-------------cCCeEEEEEEEcCccccCCC-CCCCCEE
Confidence 4566666655 566789999999999887767666422 22233344445544333221 2468888
Q ss_pred EEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEEeCCChhhHHHhhcccccEEEeecCCCceeccccccceEEEec
Q 015701 124 VVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203 (402)
Q Consensus 124 iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (402)
|..+= +.+.+ ....++++|++|+|.+...- ..++ ++ ++
T Consensus 69 val~~-----------~~~~~----~~~~l~~~g~vi~n~~~~~~-------~~~~--~~-----------------vp- 106 (170)
T PRK08338 69 VALHQ-----------LGYET----AKSSLKEDGLLIIDTDLVKP-------DRDY--IG-----------------AP- 106 (170)
T ss_pred EEcCH-----------HHHHH----HhcccCCCeEEEEeCCCcCC-------cceE--EE-----------------ec-
Confidence 76652 22222 23446788999988542100 0011 11 00
Q ss_pred CCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHcCC-CHHHHHHHhhcC
Q 015701 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV-DVEALNSTIEIL 252 (402)
Q Consensus 204 ~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~lgi-~~~~i~~~L~~~ 252 (402)
....-....|.-...|..+.- +++..+|+ +.|.+.+++++.
T Consensus 107 ------~~~ia~~~~g~~~~~N~v~lG--a~~~~~g~~~~e~~~~~i~~~ 148 (170)
T PRK08338 107 ------FTRIAEETTGLALTVNMVALG--YLVAKTGVVKKESVEEAIRRR 148 (170)
T ss_pred ------HHHHHHHhcCCHHHHHHHHHH--HHHHHhCCCCHHHHHHHHHHH
Confidence 000011223444556776554 56677895 999999999874
No 375
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=25.11 E-value=1.9e+02 Score=27.32 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=21.3
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhc
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~~~ 68 (402)
++..+|.|+|++ ||||....+...|...
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~ 131 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDS 131 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence 577899999986 5888877776666544
No 376
>PRK08356 hypothetical protein; Provisional
Probab=25.10 E-value=1e+02 Score=26.77 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=20.0
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcCCcee
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
..+|+++|. .||||.+..|. ..|+.+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~----~~g~~~i 33 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE----EKGFCRV 33 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH----HCCCcEE
Confidence 357899995 68999999995 2566543
No 377
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=25.10 E-value=96 Score=25.63 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=29.5
Q ss_pred HHHhhCCCCCcEEEEecCCC-hhhHHHHHHHHHHhcCCcee
Q 015701 34 FAAQVIPRSIKILAVTGTNG-KSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 34 ~~~~~~~~~~~vI~VTGT~G-KTTt~~ml~~iL~~~g~~~~ 73 (402)
...+.+ ++.++|+|-|-+- ++.++..+...|.++|+++.
T Consensus 8 ~i~~iL-~~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~Vi 47 (140)
T COG1832 8 DIAEIL-KSAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVI 47 (140)
T ss_pred HHHHHH-HhCceEEEEecCCCCCccHHHHHHHHHHCCCEEE
Confidence 344444 5678888888655 56788999999999999873
No 378
>PRK13949 shikimate kinase; Provisional
Probab=25.05 E-value=76 Score=27.06 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=18.1
Q ss_pred cEEEEecC--CChhhHHHHHHHHHH
Q 015701 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL~ 66 (402)
..|.|.|. .||||+..+|+..|.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34677774 589999999998874
No 379
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=25.02 E-value=75 Score=27.73 Aligned_cols=25 Identities=28% Similarity=0.578 Sum_probs=20.1
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
++..+++|+|-| ||||...+|.-++
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999996 7999888887544
No 380
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=25.01 E-value=69 Score=32.27 Aligned_cols=26 Identities=38% Similarity=0.640 Sum_probs=20.3
Q ss_pred CCCCcEEEEecCCC--hhhHHHHHHHHH
Q 015701 40 PRSIKILAVTGTNG--KSTVVTFVGQML 65 (402)
Q Consensus 40 ~~~~~vI~VTGT~G--KTTt~~ml~~iL 65 (402)
+++.+|+|+-|+|| |||+..+|+--|
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel 124 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGEL 124 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCcc
Confidence 46778999999995 888877776444
No 381
>PRK02496 adk adenylate kinase; Provisional
Probab=24.98 E-value=80 Score=27.05 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=17.0
Q ss_pred EEEEecC--CChhhHHHHHHHHH
Q 015701 45 ILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 45 vI~VTGT--~GKTTt~~ml~~iL 65 (402)
.|.|+|. .||||.+..|+.-+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 4777776 58999999998776
No 382
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=24.91 E-value=51 Score=31.24 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=21.6
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
++..++++.|.| ||||+..+|.-++.
T Consensus 31 ~~Gei~gllGpNGaGKSTLl~~l~Gl~~ 58 (306)
T PRK13537 31 QRGECFGLLGPNGAGKTTTLRMLLGLTH 58 (306)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356799999998 69999999987664
No 383
>PRK00110 hypothetical protein; Validated
Probab=24.76 E-value=1.7e+02 Score=26.75 Aligned_cols=55 Identities=11% Similarity=0.033 Sum_probs=37.5
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCC--C-----CceeEEEeecCCeEEEEcCCCCCHHHHHHHHcc
Q 015701 233 VLGLDIGVDVEALNSTIEILRTP--P-----HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMD 289 (402)
Q Consensus 233 a~~~~lgi~~~~i~~~L~~~~~~--~-----gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~ 289 (402)
..|...++|.+.|.++|++..+- . -++|-. ..+|+.+|-++.-.|..-+.+-++.
T Consensus 54 ~~Ak~~nmPkd~IerAIkk~~g~~~~~~~~e~~YEg~--gP~GvaiiVe~lTDN~nRt~~~vR~ 115 (245)
T PRK00110 54 DKAKAANMPKDNIERAIKKGTGELDGANYEEIRYEGY--GPGGVAIIVEALTDNRNRTAAEVRH 115 (245)
T ss_pred HHHHHhCCCHHHHHHHHHHhcCCCCccceEEEEEEEE--cCCCeEEEEEEecCCHHHHHHHHHH
Confidence 77889999999999999988753 1 233333 3577888888855565554444443
No 384
>PRK12338 hypothetical protein; Provisional
Probab=24.72 E-value=71 Score=30.53 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=19.4
Q ss_pred CcEEEEecC--CChhhHHHHHHHHH
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL 65 (402)
..+|.|+|+ .||||++..|+.-|
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC
Confidence 468999996 57999999999776
No 385
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=24.58 E-value=1.5e+02 Score=30.81 Aligned_cols=54 Identities=26% Similarity=0.214 Sum_probs=36.9
Q ss_pred HHHHHHhcCCc---eeeHHHHHH---hhCC---CCCcEEEEec--CCChhhHHHHHHHHHHh-cCC
Q 015701 17 GLACLLQSGKR---VMSELDFAA---QVIP---RSIKILAVTG--TNGKSTVVTFVGQMLNH-LGI 70 (402)
Q Consensus 17 ~~~~a~~~~~~---~l~~~~~~~---~~~~---~~~~vI~VTG--T~GKTTt~~ml~~iL~~-~g~ 70 (402)
.++.....|.. .+++++.+. +.++ ++..+|.+|| -.||||++..|+..|.. .|.
T Consensus 357 ~ir~~l~~G~~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~ 422 (568)
T PRK05537 357 ELRRRLREGLEIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGR 422 (568)
T ss_pred HHHHHHHCCCCCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCc
Confidence 45555555554 467777654 3321 3455899999 57899999999999986 554
No 386
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=24.43 E-value=78 Score=28.20 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=20.8
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+..+++|+|-| ||||...+|.-++
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 366799999987 6999999988776
No 387
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=24.39 E-value=2.5e+02 Score=26.14 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=6.6
Q ss_pred HHHHcCCCHHHHHH
Q 015701 234 LGLDIGVDVEALNS 247 (402)
Q Consensus 234 ~~~~lgi~~~~i~~ 247 (402)
++...|+++..|.+
T Consensus 42 lA~~a~VS~aTv~R 55 (281)
T COG1737 42 LAERAGVSPATVVR 55 (281)
T ss_pred HHHHhCCCHHHHHH
Confidence 34445555544444
No 388
>PRK01215 competence damage-inducible protein A; Provisional
Probab=24.33 E-value=1.6e+02 Score=27.27 Aligned_cols=47 Identities=17% Similarity=0.289 Sum_probs=25.8
Q ss_pred ChHHHHHHHHhCCCCcc-c-cccccHHHHHHHHHHhcCCCCEEEEcCCC
Q 015701 333 SGVLIWKTLVNNGLSIP-C-FAVANMKDAVNHARRMATNGDAIVLSPGC 379 (402)
Q Consensus 333 ~~~~~~~~l~~~~~~~~-~-~~~~~~~~ai~~~~~~~~~~d~vll~~G~ 379 (402)
+...+.+.+...|.... . .+-+|.++..+.+.+.....|+|++++|.
T Consensus 24 n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~ 72 (264)
T PRK01215 24 NASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGL 72 (264)
T ss_pred hHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 34566677777765321 1 22344554444444444567999887554
No 389
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=24.28 E-value=59 Score=26.71 Aligned_cols=20 Identities=40% Similarity=0.532 Sum_probs=14.6
Q ss_pred EEEecC--CChhhHHHHHHHHH
Q 015701 46 LAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 46 I~VTGT--~GKTTt~~ml~~iL 65 (402)
|.++|. .||||++..|+..+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 344554 48999999998775
No 390
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=24.25 E-value=53 Score=31.62 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.2
Q ss_pred CCChhhHHHHHHHHHHhcCCce
Q 015701 51 TNGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 51 T~GKTTt~~ml~~iL~~~g~~~ 72 (402)
-|||||.++.|..+|.+.|..-
T Consensus 64 DHGKTTLTaAITkila~~g~A~ 85 (449)
T KOG0460|consen 64 DHGKTTLTAAITKILAEKGGAK 85 (449)
T ss_pred cCCchhHHHHHHHHHHhccccc
Confidence 3899999999999999988643
No 391
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.21 E-value=75 Score=29.35 Aligned_cols=26 Identities=27% Similarity=0.577 Sum_probs=21.3
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
.+..+++|.|.| ||||...+|.-++.
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 466899999997 89999998886653
No 392
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=24.19 E-value=61 Score=29.69 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=21.6
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
.+..+++|+|-| ||||...+|+-++.
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 466899999997 79999999987664
No 393
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.95 E-value=74 Score=27.60 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=18.2
Q ss_pred CCCcEEEEecCCC--hhhHHHHHHH
Q 015701 41 RSIKILAVTGTNG--KSTVVTFVGQ 63 (402)
Q Consensus 41 ~~~~vI~VTGT~G--KTTt~~ml~~ 63 (402)
++..+++++|.|| |||...+|+-
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3667999999986 8887777764
No 394
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=23.78 E-value=2e+02 Score=27.25 Aligned_cols=96 Identities=14% Similarity=0.113 Sum_probs=52.5
Q ss_pred CeEEEEcCCCCCHHHHHHH------Hccc-CCCcEEEEEcCCCCcCCCCCCcchHhhhhccccccEEEEeCCChH---HH
Q 015701 268 GVTWVDDSKATNLEATCTG------LMDL-KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGV---LI 337 (402)
Q Consensus 268 ~~~iidD~~a~np~s~~~a------l~~~-~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~~d~vi~~g~~~~---~~ 337 (402)
+.-++| ++...+++.+ .+.+ ++.+.+.|+|.... +. .+-+....+.+.+.|.+++...+ .+
T Consensus 88 p~Almd---~~~lT~~RTaA~salaa~~l~~da~~l~iiGaG~Q-A~-----~~~~a~~~v~~i~~v~v~~r~~~~a~~f 158 (301)
T PRK06407 88 LVAIFE---ANRLGQIRTGAVTAYATSILHKNVENFTIIGSGFQ-AE-----TQLEGMASVYNPKRIRVYSRNFDHARAF 158 (301)
T ss_pred EEEEEc---cchHHHHHHHHHHHHHHHHhhcCCcEEEEECCcHH-HH-----HHHHHHHhcCCCCEEEEECCCHHHHHHH
Confidence 344554 4455555552 1222 45688999986432 11 12222222345788888876653 45
Q ss_pred HHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCc
Q 015701 338 WKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 380 (402)
Q Consensus 338 ~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~~ 380 (402)
.+.++.. .+..+..+++.+++++. -|+|+.++++.
T Consensus 159 ~~~~~~~-~~~~v~~~~~~~eav~~-------aDIV~taT~s~ 193 (301)
T PRK06407 159 AERFSKE-FGVDIRPVDNAEAALRD-------ADTITSITNSD 193 (301)
T ss_pred HHHHHHh-cCCcEEEeCCHHHHHhc-------CCEEEEecCCC
Confidence 5556542 12356667888887543 48877665543
No 395
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=23.64 E-value=87 Score=33.82 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=23.0
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCcee
Q 015701 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
++..|+|- .||||+...+..+++..|.++.
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~ 400 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVI 400 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 34444443 5899999999999999998874
No 396
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=23.61 E-value=2.2e+02 Score=24.88 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=15.6
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQ 63 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~ 63 (402)
...++|+++|.. ||||+..-+.+
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999975 56665444433
No 397
>PRK13764 ATPase; Provisional
Probab=23.61 E-value=1.3e+02 Score=31.58 Aligned_cols=31 Identities=19% Similarity=0.332 Sum_probs=23.5
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
....|.|+|. .||||+...|...+...+..+
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV 288 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIV 288 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEE
Confidence 3456888884 689999988888887766555
No 398
>PF14207 DpnD-PcfM: DpnD/PcfM-like protein
Probab=23.59 E-value=89 Score=20.70 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=18.9
Q ss_pred cccHHHHHHHHHHhcCCCCEEE
Q 015701 353 VANMKDAVNHARRMATNGDAIV 374 (402)
Q Consensus 353 ~~~~~~ai~~~~~~~~~~d~vl 374 (402)
.++.++|++.+...-..+++||
T Consensus 18 A~s~eeA~~~v~~~y~~~eivL 39 (48)
T PF14207_consen 18 AESEEEAIEKVRDAYRNEEIVL 39 (48)
T ss_pred eCCHHHHHHHHHHHHhCCCEEc
Confidence 5789999999999999999664
No 399
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=23.53 E-value=67 Score=25.04 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=19.3
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHHhcC
Q 015701 44 KILAVTGTN--GKSTVVTFVGQMLNHLG 69 (402)
Q Consensus 44 ~vI~VTGT~--GKTTt~~ml~~iL~~~g 69 (402)
..+.+.|.. ||||++..++..+...+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 456666654 69999998888887765
No 400
>PRK13948 shikimate kinase; Provisional
Probab=23.52 E-value=92 Score=27.04 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=19.5
Q ss_pred CCcEEEEec--CCChhhHHHHHHHHHH
Q 015701 42 SIKILAVTG--TNGKSTVVTFVGQMLN 66 (402)
Q Consensus 42 ~~~vI~VTG--T~GKTTt~~ml~~iL~ 66 (402)
....|.++| -.||||+..+|+.-|.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 445677777 5799999999998773
No 401
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=23.26 E-value=82 Score=27.93 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=20.3
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+..++++.|-| ||||...+|..++
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 356799999997 6999998888665
No 402
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=23.23 E-value=91 Score=28.37 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=21.9
Q ss_pred CCcEEEEecCCC--hhhHHHHHHHHHHh
Q 015701 42 SIKILAVTGTNG--KSTVVTFVGQMLNH 67 (402)
Q Consensus 42 ~~~vI~VTGT~G--KTTt~~ml~~iL~~ 67 (402)
+..+.+|.|-|| |||+..+|..+|..
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ll~~ 51 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICFVLGI 51 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhcc
Confidence 456788999885 99999999999964
No 403
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=23.10 E-value=93 Score=31.70 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=17.3
Q ss_pred HHHhhCCCCCcEEEEecCC--ChhhHHHH
Q 015701 34 FAAQVIPRSIKILAVTGTN--GKSTVVTF 60 (402)
Q Consensus 34 ~~~~~~~~~~~vI~VTGT~--GKTTt~~m 60 (402)
.+.+....+.-+|.|||.. |||||...
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 3444442344588899865 79998863
No 404
>PRK13976 thymidylate kinase; Provisional
Probab=23.10 E-value=84 Score=27.95 Aligned_cols=27 Identities=22% Similarity=0.490 Sum_probs=20.3
Q ss_pred EEEec--CCChhhHHHHHHHHHHhc-C-Cce
Q 015701 46 LAVTG--TNGKSTVVTFVGQMLNHL-G-IEA 72 (402)
Q Consensus 46 I~VTG--T~GKTTt~~ml~~iL~~~-g-~~~ 72 (402)
|++-| -.||||.+.+|+.-|+.. | ..+
T Consensus 3 Iv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v 33 (209)
T PRK13976 3 ITFEGIDGSGKTTQSRLLAEYLSDIYGENNV 33 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCcce
Confidence 44444 368999999999999986 5 344
No 405
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=23.04 E-value=61 Score=27.58 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=15.1
Q ss_pred ecCCChhhHHHHHHHHH
Q 015701 49 TGTNGKSTVVTFVGQML 65 (402)
Q Consensus 49 TGT~GKTTt~~ml~~iL 65 (402)
.|-.||||++.-|+..|
T Consensus 8 kgG~GKSt~a~nLA~~l 24 (179)
T cd03110 8 KGGTGKTTVTAALAALL 24 (179)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 46679999999999999
No 406
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=22.99 E-value=85 Score=27.06 Aligned_cols=21 Identities=38% Similarity=0.376 Sum_probs=15.9
Q ss_pred CCCcEEEEecCCC--hhhHHHHH
Q 015701 41 RSIKILAVTGTNG--KSTVVTFV 61 (402)
Q Consensus 41 ~~~~vI~VTGT~G--KTTt~~ml 61 (402)
.+..+++|+|.|| |||.-.++
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 3667999999986 77776655
No 407
>PRK10908 cell division protein FtsE; Provisional
Probab=22.98 E-value=84 Score=27.88 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=20.5
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+..+++|.|-| ||||...+|.-++
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999996 8999998887554
No 408
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=22.92 E-value=91 Score=26.90 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=21.6
Q ss_pred CCCcEEEEecCCC--hhhHHHHHHHHHH
Q 015701 41 RSIKILAVTGTNG--KSTVVTFVGQMLN 66 (402)
Q Consensus 41 ~~~~vI~VTGT~G--KTTt~~ml~~iL~ 66 (402)
++..+++|.|-|| |||...+|.-++.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4678999999875 9999999887764
No 409
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=22.81 E-value=5e+02 Score=22.66 Aligned_cols=68 Identities=13% Similarity=-0.013 Sum_probs=43.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHcccC---CCcEEEEEcCCCCcCCCCCCcchHhhhhccccccEEEEeCCChHHHHHHH
Q 015701 268 GVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTL 341 (402)
Q Consensus 268 ~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~~d~vi~~g~~~~~~~~~l 341 (402)
.+.+|-|.| .|..+++++++.+. +...++++|+.-++|..+ .+..+.+.....+++.|.....+...+
T Consensus 2 ri~~isDiH-g~~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~-----~~~~~~l~~~~~~~v~GNhe~~~~~~~ 72 (207)
T cd07424 2 RDFVVGDIH-GHYSLLQKALDAVGFDPARDRLISVGDLIDRGPES-----LACLELLLEPWFHAVRGNHEQMAIDAL 72 (207)
T ss_pred CEEEEECCC-CCHHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCH-----HHHHHHHhcCCEEEeECCChHHHHhHh
Confidence 367888985 47888888887763 346788899988877544 234444433335666777655444433
No 410
>PF05729 NACHT: NACHT domain
Probab=22.79 E-value=1.1e+02 Score=25.07 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=19.4
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcC
Q 015701 45 ILAVTGT--NGKSTVVTFVGQMLNHLG 69 (402)
Q Consensus 45 vI~VTGT--~GKTTt~~ml~~iL~~~g 69 (402)
++.|+|. .||||++..+..-+...+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 4566665 579999999998887765
No 411
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=22.75 E-value=61 Score=27.17 Aligned_cols=18 Identities=33% Similarity=0.320 Sum_probs=14.9
Q ss_pred CChhhHHHHHHHHHHhcC
Q 015701 52 NGKSTVVTFVGQMLNHLG 69 (402)
Q Consensus 52 ~GKTTt~~ml~~iL~~~g 69 (402)
.||||+..+|+..|.-..
T Consensus 3 sGKStvg~~lA~~L~~~f 20 (158)
T PF01202_consen 3 SGKSTVGKLLAKRLGRPF 20 (158)
T ss_dssp SSHHHHHHHHHHHHTSEE
T ss_pred CcHHHHHHHHHHHhCCCc
Confidence 699999999999886443
No 412
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.49 E-value=1.6e+02 Score=30.01 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=18.6
Q ss_pred HhhCCCCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 36 AQVIPRSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 36 ~~~~~~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+...++--.|.|||.. |||||.+-+-+-|
T Consensus 251 ~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~l 282 (500)
T COG2804 251 LRLLNRPQGLILVTGPTGSGKTTTLYAALSEL 282 (500)
T ss_pred HHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 33443455699999975 6888755443333
No 413
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=22.40 E-value=86 Score=28.09 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=19.1
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
+..+++|+|.| ||||...+|.-++
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56799999987 6999888887554
No 414
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=22.35 E-value=94 Score=35.66 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=14.3
Q ss_pred EEEEecCC--ChhhHHHHHHHH
Q 015701 45 ILAVTGTN--GKSTVVTFVGQM 64 (402)
Q Consensus 45 vI~VTGT~--GKTTt~~ml~~i 64 (402)
-++++||| ||||+-++|=-.
T Consensus 19 ~t~i~GTNG~GKTTlLRlip~F 40 (1201)
T PF12128_consen 19 HTHICGTNGVGKTTLLRLIPFF 40 (1201)
T ss_pred ceeeecCCCCcHHHHHHHHHHh
Confidence 37899998 588876665533
No 415
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=22.26 E-value=94 Score=30.26 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=19.2
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
.+...|.|+|-+ |||||...+...+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 355789999875 79998877766554
No 416
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=22.19 E-value=89 Score=25.71 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=19.7
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
++..+++|+|.| ||||...+|.-++
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 466799999987 6998888886654
No 417
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=22.17 E-value=87 Score=28.18 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=20.3
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+..+++++|.| ||||...+|.-++
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 366799999997 6999888887655
No 418
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=22.10 E-value=89 Score=27.62 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=20.3
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+..+++|.|-| ||||...+|.-++
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 466799999997 7999888888654
No 419
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=22.09 E-value=91 Score=27.38 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=19.5
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+..+++|+|.| ||||...+|.-++
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467799999986 6888888877554
No 420
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=22.08 E-value=4.2e+02 Score=27.24 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=38.8
Q ss_pred CHHHHHHHhhc--CCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHccc--CCCcEEEEEcCC
Q 015701 241 DVEALNSTIEI--LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL--KGHKCVILLGGQ 302 (402)
Q Consensus 241 ~~~~i~~~L~~--~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~--~~~~~i~V~g~~ 302 (402)
..++|++-+++ |.|.++|..+ .+||+.|-=+..+.-+.++.+ |...+++||...
T Consensus 100 gVddiR~i~e~v~y~P~~~ryKV--------yiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATT 157 (515)
T COG2812 100 GVDDIREIIEKVNYAPSEGRYKV--------YIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATT 157 (515)
T ss_pred ChHHHHHHHHHhccCCccccceE--------EEEecHHhhhHHHHHHHhcccccCccCeEEEEecC
Confidence 44666666665 5667777664 488887777888888899998 456788888754
No 421
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=21.82 E-value=37 Score=31.41 Aligned_cols=26 Identities=19% Similarity=0.494 Sum_probs=19.5
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHh
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQMLNH 67 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL~~ 67 (402)
....+.+-|+ +|||||-.||..+++-
T Consensus 26 ~gef~vliGpSGsGKTTtLkMINrLiep 53 (309)
T COG1125 26 EGEFLVLIGPSGSGKTTTLKMINRLIEP 53 (309)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhcccCC
Confidence 3445666665 5799999999998864
No 422
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=21.78 E-value=1.2e+02 Score=24.57 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=20.1
Q ss_pred EEEecC--CChhhHHHHHHHHHHhcCCcee
Q 015701 46 LAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 46 I~VTGT--~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
+.|+|. .||||.+..+...+...|..+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~ 31 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVV 31 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEE
Confidence 445554 4799999999888877666653
No 423
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=21.73 E-value=86 Score=28.22 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=20.4
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 43 IKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 43 ~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
..+.+|.|-| ||||+..+|..+|.
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l~ 48 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVLS 48 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 4588999998 69999999997774
No 424
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=21.70 E-value=80 Score=29.18 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=21.5
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
.+..+++|.|-| ||||...+|.-++.
T Consensus 48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 48 HENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 356799999986 69999999997764
No 425
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=21.67 E-value=95 Score=27.11 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=19.8
Q ss_pred CCCcEEEEecCCC--hhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTNG--KSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~G--KTTt~~ml~~iL 65 (402)
++..+++|+|.|| |||...+|.-++
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 4677999999885 888888877654
No 426
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=21.63 E-value=83 Score=31.44 Aligned_cols=31 Identities=35% Similarity=0.400 Sum_probs=27.7
Q ss_pred CCcEEEEecCC------ChhhHHHHHHHHHHhcCCce
Q 015701 42 SIKILAVTGTN------GKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 42 ~~~vI~VTGT~------GKTTt~~ml~~iL~~~g~~~ 72 (402)
+.+.|.||+-+ |||||+-=|.+.|...|..+
T Consensus 51 ~gKlILVTaitPTPaGEGKsTttiGL~~al~~lgK~~ 87 (554)
T COG2759 51 DGKLILVTAITPTPAGEGKTTTTIGLVDALNKLGKKA 87 (554)
T ss_pred CceEEEEEecCCCCCCCCcceeeehHHHHHHhcCchh
Confidence 67899999865 99999999999999999875
No 427
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=21.60 E-value=92 Score=28.38 Aligned_cols=24 Identities=25% Similarity=0.610 Sum_probs=19.5
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
+..+++|.|.| ||||...+|+-++
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56799999987 6999988887554
No 428
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=21.59 E-value=96 Score=27.33 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=19.5
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 43 IKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 43 ~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
..+++|.|.| ||||....|...|-
T Consensus 22 ~g~~~i~G~NGsGKTTLl~ai~~~l~ 47 (204)
T cd03240 22 SPLTLIVGQNGAGKTTIIEALKYALT 47 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 3489999988 69999998887763
No 429
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=21.58 E-value=92 Score=28.49 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=20.4
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+..+++|+|-| ||||...+|.-++
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 366799999986 7999988888655
No 430
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=21.51 E-value=94 Score=27.71 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=19.8
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+..+++|+|.| ||||...+|.-++
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 366799999986 6999888887654
No 431
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.49 E-value=90 Score=28.96 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=20.5
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+..+++|.|.| ||||+..+|.-++
T Consensus 28 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~ 54 (277)
T PRK13652 28 PRNSRIAVIGPNGAGKSTLFRHFNGIL 54 (277)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 366799999998 6999998887654
No 432
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=21.36 E-value=73 Score=28.99 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=17.2
Q ss_pred CChhhHHHHHHHHHHhcCCce
Q 015701 52 NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 52 ~GKTTt~~ml~~iL~~~g~~~ 72 (402)
.||||-|.-+.+.+...|.++
T Consensus 7 SGKTT~~~~~~~~~~~~~~~~ 27 (238)
T PF03029_consen 7 SGKTTFCKGLSEWLESNGRDV 27 (238)
T ss_dssp SSHHHHHHHHHHHHTTT-S-E
T ss_pred CCHHHHHHHHHHHHHhccCCc
Confidence 599999999999999888765
No 433
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=21.33 E-value=1e+02 Score=27.97 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=20.5
Q ss_pred EEEec--CCChhhHHHHHHHHHHhcCCce
Q 015701 46 LAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 46 I~VTG--T~GKTTt~~ml~~iL~~~g~~~ 72 (402)
|.++| ..||||.+..|+.-|...|..+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v 30 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDV 30 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCce
Confidence 34444 4689999999999998777654
No 434
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.15 E-value=97 Score=27.42 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=20.3
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+..+++|+|-| ||||...+|+-++
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999997 6999999888554
No 435
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=21.15 E-value=60 Score=25.59 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=15.2
Q ss_pred CCcEEEEecCC--ChhhHHHHHH
Q 015701 42 SIKILAVTGTN--GKSTVVTFVG 62 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~ 62 (402)
+...+++.|.+ ||||+..++.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 44567777764 7999998864
No 436
>PRK00625 shikimate kinase; Provisional
Probab=21.10 E-value=95 Score=26.67 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=16.0
Q ss_pred EEEecC--CChhhHHHHHHHHHH
Q 015701 46 LAVTGT--NGKSTVVTFVGQMLN 66 (402)
Q Consensus 46 I~VTGT--~GKTTt~~ml~~iL~ 66 (402)
|.++|. .||||++.+|+.-|.
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 555553 589999999987763
No 437
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=21.05 E-value=89 Score=26.52 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=17.1
Q ss_pred cEEEEecCC--ChhhHHHHHHHHH
Q 015701 44 KILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 44 ~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
++|+|.|.+ ||||.+.+|...+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578888877 6999888887654
No 438
>PF14516 AAA_35: AAA-like domain
Probab=21.04 E-value=1.9e+02 Score=27.64 Aligned_cols=33 Identities=12% Similarity=0.240 Sum_probs=28.3
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCcee
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~ 73 (402)
++...+.|.|.. ||||+..-+.+-|++.|+.+.
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v 63 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCV 63 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEE
Confidence 457889999986 999999999999988888763
No 439
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=20.96 E-value=86 Score=28.87 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=21.7
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
.+..+++|.|-| ||||...+|.-++.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 43 PEKTVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 466899999986 79999999997764
No 440
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=20.94 E-value=97 Score=28.04 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=19.5
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+..+++|+|.| ||||...+|.-++
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467899999987 5888888877554
No 441
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.91 E-value=98 Score=27.12 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=19.9
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+..+++|+|-| ||||...+|+-++
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 466799999986 6999888888554
No 442
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=20.90 E-value=93 Score=29.48 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=20.4
Q ss_pred HHHhhCCCCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 34 FAAQVIPRSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 34 ~~~~~~~~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
++.... +....|.|+|.+ ||||+...|...+
T Consensus 136 ~l~~~v-~~~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 136 FLRLAI-ASRKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred HHHHHh-hCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 343444 466789999865 6888877665444
No 443
>PLN02200 adenylate kinase family protein
Probab=20.88 E-value=1.2e+02 Score=27.38 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=22.2
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcCCceeeec
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~~~g 76 (402)
..+|.|+|. .||||.+..|+.-+ |+.+...|
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~---g~~his~g 75 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF---GFKHLSAG 75 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh---CCeEEEcc
Confidence 458899997 57999999998654 65554433
No 444
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=20.85 E-value=95 Score=27.95 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=20.3
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+..+++|+|.| ||||...+|+-++
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 366799999987 6999999987655
No 445
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=20.83 E-value=99 Score=27.04 Aligned_cols=26 Identities=15% Similarity=0.468 Sum_probs=19.5
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
++..+++|.|.| ||||...+|.-++.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 466799999987 58888777775543
No 446
>PRK13057 putative lipid kinase; Reviewed
Probab=20.82 E-value=1.2e+02 Score=28.39 Aligned_cols=13 Identities=15% Similarity=0.511 Sum_probs=5.5
Q ss_pred CEEEEcCCCcccc
Q 015701 371 DAIVLSPGCASFD 383 (402)
Q Consensus 371 d~vll~~G~~s~~ 383 (402)
|.|++.+|-|+++
T Consensus 52 d~iiv~GGDGTv~ 64 (287)
T PRK13057 52 DLVIVGGGDGTLN 64 (287)
T ss_pred CEEEEECchHHHH
Confidence 4444444444443
No 447
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=20.75 E-value=96 Score=27.02 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=19.8
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+..+++|+|-| ||||...+|+-++
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356799999987 6999888887554
No 448
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=20.71 E-value=91 Score=27.42 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=19.1
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+..+++|+|-| ||||...+|+-++
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 466799999976 6999888876443
No 449
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=20.71 E-value=79 Score=29.05 Aligned_cols=27 Identities=22% Similarity=0.566 Sum_probs=20.4
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcC
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQMLNHLG 69 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL~~~g 69 (402)
...+.+.|. .||||++..++..|...|
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 345566665 489999999999997654
No 450
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=20.69 E-value=98 Score=27.71 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=20.3
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+..+++|+|-| ||||...+|.-++
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356799999987 6999998888655
No 451
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=20.67 E-value=92 Score=30.64 Aligned_cols=32 Identities=28% Similarity=0.459 Sum_probs=26.3
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCcee
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
...++.|-|- .||||.+.+|+.-|-+.|+++.
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~ 105 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVA 105 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEE
Confidence 4457777775 6999999999999999998774
No 452
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=20.66 E-value=1.1e+02 Score=26.16 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=17.1
Q ss_pred cEEEEec--CCChhhHHHHHHHHH
Q 015701 44 KILAVTG--TNGKSTVVTFVGQML 65 (402)
Q Consensus 44 ~vI~VTG--T~GKTTt~~ml~~iL 65 (402)
+.|.+.| ..||||+..+|+..|
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 4566666 468999999999876
No 453
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=20.57 E-value=1.2e+02 Score=29.34 Aligned_cols=47 Identities=17% Similarity=0.257 Sum_probs=25.1
Q ss_pred HHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 18 ~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
+..-.+.|..--...+++.... +....|.|+|.. ||||+...+...+
T Consensus 154 l~~l~~~g~~~~~~~~~L~~~v-~~~~~ili~G~tGsGKTTll~al~~~i 202 (340)
T TIGR03819 154 LDELVASGTFPPGVARLLRAIV-AARLAFLISGGTGSGKTTLLSALLALV 202 (340)
T ss_pred HHHHHHcCCCCHHHHHHHHHHH-hCCCeEEEECCCCCCHHHHHHHHHccC
Confidence 4333444432222334455555 455678888765 6887776654443
No 454
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=20.55 E-value=1e+02 Score=25.90 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=21.3
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
.+..+++|.|-| ||||...+|.-++.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 466799999996 79999999986654
No 455
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=20.46 E-value=87 Score=26.93 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=17.4
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHH
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL 65 (402)
+...|+|.|. +||||+..-|..-.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~ 27 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKA 27 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhc
Confidence 4578889885 79999876665443
No 456
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=20.38 E-value=62 Score=23.05 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=10.6
Q ss_pred cchhcCCC----CHHHHHHHHHH
Q 015701 130 PDHLERHK----TMKNYALTKCH 148 (402)
Q Consensus 130 ~dH~~~~~----t~e~i~~~k~~ 148 (402)
.||+.+|+ ++|++.++|.+
T Consensus 42 aDnLg~f~e~~~~iE~~l~~kge 64 (66)
T PF05180_consen 42 ADNLGWFGENKRNIEDILKEKGE 64 (66)
T ss_dssp --SS-SGGGS---HHHHHHHH--
T ss_pred hhhhcccccCCCCHHHHHHHcCC
Confidence 46777663 79999998865
No 457
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=20.37 E-value=1e+02 Score=27.68 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=19.9
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+..+++|+|-| ||||...+|.-++
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999997 6999888887554
No 458
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=20.34 E-value=1e+02 Score=26.67 Aligned_cols=25 Identities=24% Similarity=0.496 Sum_probs=19.0
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+..+++|.|-| ||||...+|.-++
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356799999986 5888877777654
No 459
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=20.33 E-value=1.1e+02 Score=26.15 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=20.2
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
.+..+++|+|.| ||||...+|+-++.
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 366799999987 69998888876543
No 460
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.30 E-value=1.1e+02 Score=28.02 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=21.3
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
.+..+++|.|.| ||||...+|+-++.
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 356799999986 69999999987764
No 461
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=20.24 E-value=77 Score=27.31 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=16.0
Q ss_pred EEEEecCC--ChhhHHHHHHHHH
Q 015701 45 ILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 45 vI~VTGT~--GKTTt~~ml~~iL 65 (402)
+|.+.|.+ ||||+..+|+..+
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 56666654 7999999997655
No 462
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=20.24 E-value=76 Score=30.43 Aligned_cols=26 Identities=31% Similarity=0.357 Sum_probs=18.4
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCC
Q 015701 45 ILAVTGT--NGKSTVVTFVGQMLNHLGI 70 (402)
Q Consensus 45 vI~VTGT--~GKTTt~~ml~~iL~~~g~ 70 (402)
.|.++|. .||||.+..++..|.....
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 3555554 4799999999998864433
No 463
>PRK08618 ornithine cyclodeaminase; Validated
Probab=20.21 E-value=3.4e+02 Score=25.83 Aligned_cols=109 Identities=16% Similarity=0.195 Sum_probs=54.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHH------ccc--CCCcEEEEEcCCCCcCCCCCCcchHhhhhccccccEEEEeCCChH---
Q 015701 267 QGVTWVDDSKATNLEATCTGL------MDL--KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGV--- 335 (402)
Q Consensus 267 ~~~~iidD~~a~np~s~~~al------~~~--~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~~d~vi~~g~~~~--- 335 (402)
.+.-++| ++...+++.+. +.+ ++.+.++|+|+..- +. .....+.. ..+.+.|.+++...+
T Consensus 96 ~p~a~~d---~~~lT~~RTaa~sala~~~la~~~~~~v~iiGaG~~-a~----~~~~al~~-~~~~~~v~v~~r~~~~a~ 166 (325)
T PRK08618 96 EVLAILD---GTYLTQIRTGALSGVATKYLAREDAKTLCLIGTGGQ-AK----GQLEAVLA-VRDIERVRVYSRTFEKAY 166 (325)
T ss_pred ceEEEEc---cchhhhhhHHHHHHHHHHHhcCCCCcEEEEECCcHH-HH----HHHHHHHh-cCCccEEEEECCCHHHHH
Confidence 3344554 45566665542 334 24578999986422 10 11222222 234677777766543
Q ss_pred HHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCcccccccChhHHhH
Q 015701 336 LIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393 (402)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~~s~~~~~~~~~r~~ 393 (402)
.+.+.++.. .+..+..+++.++++ ..-|+|+.++++.....- ++.+.|.
T Consensus 167 ~~~~~~~~~-~~~~~~~~~~~~~~~-------~~aDiVi~aT~s~~p~i~-~~l~~G~ 215 (325)
T PRK08618 167 AFAQEIQSK-FNTEIYVVNSADEAI-------EEADIIVTVTNAKTPVFS-EKLKKGV 215 (325)
T ss_pred HHHHHHHHh-cCCcEEEeCCHHHHH-------hcCCEEEEccCCCCcchH-HhcCCCc
Confidence 344444322 122344567777665 345888887665433222 4444443
No 464
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=20.17 E-value=95 Score=27.86 Aligned_cols=25 Identities=36% Similarity=0.574 Sum_probs=20.0
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHh
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQMLNH 67 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL~~ 67 (402)
..+|+|-|- .||+|++..|+.-|.-
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~ 30 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGF 30 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCC
Confidence 378999884 6899999999976643
No 465
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=20.04 E-value=1e+02 Score=26.77 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=20.2
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+..+++|+|.| ||||...+|+-++
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 466799999997 7999888887655
No 466
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=20.02 E-value=3.7e+02 Score=19.83 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=29.0
Q ss_pred CCCceeEEEeecC-CeEEEEcCCCCCHHHHHHHHcccCCCcEEEEEcCC
Q 015701 255 PPHRMQIVHRDIQ-GVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ 302 (402)
Q Consensus 255 ~~gR~e~~~~~~~-~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~ 302 (402)
.|||++++-.+.. .-.+++-...++|+.+..-+.. +++++++|+...
T Consensus 5 ~~grl~VLVv~n~c~~kL~~~~~~~D~~~i~r~f~T-pdN~lV~V~~~n 52 (83)
T PF10623_consen 5 HPGRLQVLVVSNHCERKLFDTKPDNDPDKIARRFCT-PDNCLVCVLQDN 52 (83)
T ss_pred CCCeEEEEEEeCCcceeEeecCCCCCHHHHHhhccC-cCCeEEEEEeCC
Confidence 6899999843222 2455653334567766655544 467889988643
Done!