Query 015701
Match_columns 402
No_of_seqs 190 out of 1453
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 17:10:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015701.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015701hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lk7_A UDP-N-acetylmuramoylala 100.0 4.7E-70 1.6E-74 544.2 42.8 374 2-401 73-447 (451)
2 2x5o_A UDP-N-acetylmuramoylala 100.0 1.2E-64 4.1E-69 503.8 39.0 365 3-401 66-435 (439)
3 4hv4_A UDP-N-acetylmuramate--L 100.0 2E-59 7E-64 471.8 33.1 363 2-387 82-476 (494)
4 3hn7_A UDP-N-acetylmuramate-L- 100.0 1.9E-58 6.4E-63 467.7 37.8 375 2-388 81-512 (524)
5 1p3d_A UDP-N-acetylmuramate--a 100.0 1.1E-56 3.8E-61 450.7 32.2 363 3-388 79-468 (475)
6 2am1_A SP protein, UDP-N-acety 100.0 2.3E-57 7.8E-62 453.4 26.2 361 4-400 65-450 (454)
7 1gg4_A UDP-N-acetylmuramoylala 100.0 7.7E-57 2.6E-61 449.0 25.2 360 4-400 64-444 (452)
8 2f00_A UDP-N-acetylmuramate--L 100.0 7.1E-56 2.4E-60 446.5 30.0 363 3-388 80-474 (491)
9 1j6u_A UDP-N-acetylmuramate-al 100.0 2.4E-54 8.3E-59 432.5 31.8 349 2-387 72-448 (469)
10 1e8c_A UDP-N-acetylmuramoylala 100.0 2.6E-51 8.9E-56 413.9 29.6 332 41-387 106-475 (498)
11 2wtz_A UDP-N-acetylmuramoyl-L- 100.0 6.1E-51 2.1E-55 413.9 30.2 333 42-387 145-513 (535)
12 1jbw_A Folylpolyglutamate synt 100.0 6.1E-48 2.1E-52 382.5 23.7 332 28-388 21-419 (428)
13 3nrs_A Dihydrofolate:folylpoly 100.0 1.9E-47 6.5E-52 379.3 27.1 327 28-388 34-431 (437)
14 2vos_A Folylpolyglutamate synt 100.0 5.5E-47 1.9E-51 380.2 27.6 336 27-387 45-477 (487)
15 1o5z_A Folylpolyglutamate synt 100.0 4.3E-47 1.5E-51 377.2 24.6 316 41-389 50-428 (442)
16 1w78_A FOLC bifunctional prote 100.0 9.1E-46 3.1E-50 366.4 28.1 320 31-387 38-409 (422)
17 3eag_A UDP-N-acetylmuramate:L- 100.0 2E-45 6.9E-50 351.5 25.4 248 2-257 67-326 (326)
18 3mvn_A UDP-N-acetylmuramate:L- 99.8 7.5E-19 2.6E-23 150.3 12.7 139 242-387 11-155 (163)
19 1pjq_A CYSG, siroheme synthase 94.6 0.0098 3.4E-07 58.5 1.5 65 3-68 74-146 (457)
20 3fwy_A Light-independent proto 93.1 0.086 3E-06 49.0 4.9 34 41-74 46-81 (314)
21 4dzz_A Plasmid partitioning pr 92.0 0.15 5.1E-06 43.6 4.7 32 43-74 1-35 (206)
22 3fgn_A Dethiobiotin synthetase 92.0 0.16 5.6E-06 45.5 5.0 40 35-74 18-60 (251)
23 3of5_A Dethiobiotin synthetase 91.9 0.17 5.7E-06 44.7 4.9 34 41-74 2-38 (228)
24 1xjc_A MOBB protein homolog; s 91.5 0.24 8.1E-06 41.5 5.2 34 41-74 2-37 (169)
25 1byi_A Dethiobiotin synthase; 90.6 0.22 7.5E-06 43.3 4.4 31 44-74 2-35 (224)
26 3ea0_A ATPase, para family; al 89.7 0.29 9.8E-06 43.1 4.4 32 41-72 2-37 (245)
27 3cio_A ETK, tyrosine-protein k 89.4 0.97 3.3E-05 41.4 7.9 33 41-73 102-137 (299)
28 3bfv_A CAPA1, CAPB2, membrane 88.7 0.75 2.6E-05 41.5 6.5 33 41-73 80-115 (271)
29 2ph1_A Nucleotide-binding prot 88.4 0.81 2.8E-05 40.9 6.5 43 31-74 7-52 (262)
30 3la6_A Tyrosine-protein kinase 88.0 0.78 2.7E-05 41.8 6.2 33 41-73 90-125 (286)
31 1wcv_1 SOJ, segregation protei 88.0 0.46 1.6E-05 42.4 4.5 34 41-74 4-40 (257)
32 3qxc_A Dethiobiotin synthetase 87.9 0.55 1.9E-05 41.7 4.9 34 41-74 19-55 (242)
33 1g3q_A MIND ATPase, cell divis 87.2 0.61 2.1E-05 40.7 4.8 30 44-73 3-35 (237)
34 2xj4_A MIPZ; replication, cell 86.9 0.63 2.2E-05 42.3 4.8 30 44-73 5-37 (286)
35 3q9l_A Septum site-determining 85.7 0.78 2.7E-05 40.6 4.8 30 44-73 3-35 (260)
36 3cwq_A Para family chromosome 85.2 0.8 2.7E-05 39.4 4.4 28 45-73 2-32 (209)
37 1hyq_A MIND, cell division inh 84.7 0.86 3E-05 40.5 4.5 30 44-73 3-35 (263)
38 1zu4_A FTSY; GTPase, signal re 84.6 1.1 3.6E-05 41.7 5.2 33 42-74 104-138 (320)
39 2oze_A ORF delta'; para, walke 84.3 0.51 1.7E-05 43.0 2.9 25 49-73 45-69 (298)
40 1rz3_A Hypothetical protein rb 84.2 1.6 5.6E-05 37.1 5.9 32 41-72 20-53 (201)
41 1vma_A Cell division protein F 83.5 1.2 4.3E-05 40.9 5.1 33 42-74 103-137 (306)
42 2g0t_A Conserved hypothetical 83.2 1.8 6E-05 40.6 6.0 33 42-74 168-203 (350)
43 2afh_E Nitrogenase iron protei 83.2 1.3 4.3E-05 40.1 5.0 31 43-73 2-34 (289)
44 3k9g_A PF-32 protein; ssgcid, 83.0 1 3.5E-05 40.2 4.3 32 41-73 25-59 (267)
45 3ug7_A Arsenical pump-driving 82.9 1.3 4.5E-05 41.5 5.1 34 41-74 23-59 (349)
46 3end_A Light-independent proto 81.7 1.5 5E-05 40.1 4.9 33 41-73 39-73 (307)
47 3fkq_A NTRC-like two-domain pr 81.6 1.3 4.6E-05 41.8 4.7 33 41-73 141-176 (373)
48 1a7j_A Phosphoribulokinase; tr 81.6 1.1 3.7E-05 40.9 3.9 30 42-71 4-35 (290)
49 3pg5_A Uncharacterized protein 80.2 0.93 3.2E-05 42.7 3.0 32 43-74 1-35 (361)
50 3zq6_A Putative arsenical pump 80.1 1.7 5.8E-05 40.2 4.8 31 44-74 14-47 (324)
51 2z0h_A DTMP kinase, thymidylat 80.0 1.6 5.5E-05 36.6 4.3 29 45-73 2-32 (197)
52 1np6_A Molybdopterin-guanine d 79.8 2.4 8.2E-05 35.4 5.2 32 42-73 5-38 (174)
53 3ez9_A Para; DNA binding, wing 79.7 1.1 3.9E-05 42.8 3.5 32 41-72 109-149 (403)
54 3ez2_A Plasmid partition prote 79.4 1.9 6.6E-05 41.0 5.1 27 41-67 106-135 (398)
55 2vo1_A CTP synthase 1; pyrimid 78.8 2.7 9.4E-05 37.5 5.3 33 41-73 21-57 (295)
56 2woo_A ATPase GET3; tail-ancho 78.7 1.8 6E-05 40.2 4.4 32 43-74 18-52 (329)
57 2obn_A Hypothetical protein; s 78.7 2.1 7.3E-05 40.0 4.9 108 42-149 151-289 (349)
58 2px0_A Flagellar biosynthesis 77.8 2.6 8.7E-05 38.5 5.1 33 42-74 104-139 (296)
59 1nn5_A Similar to deoxythymidy 77.7 2.3 8E-05 36.1 4.6 31 42-72 8-40 (215)
60 1kyq_A Met8P, siroheme biosynt 77.1 0.5 1.7E-05 42.8 0.1 64 3-67 108-183 (274)
61 1nks_A Adenylate kinase; therm 77.1 2 7E-05 35.7 4.0 29 44-72 2-32 (194)
62 3c8u_A Fructokinase; YP_612366 76.6 3.7 0.00013 35.0 5.6 30 41-70 20-51 (208)
63 3kl4_A SRP54, signal recogniti 75.9 2.7 9.1E-05 40.7 4.9 32 43-74 97-130 (433)
64 2wwf_A Thymidilate kinase, put 75.9 2.5 8.7E-05 35.8 4.3 31 42-72 9-41 (212)
65 3uie_A Adenylyl-sulfate kinase 75.5 4.2 0.00014 34.4 5.6 31 41-71 23-55 (200)
66 2pbr_A DTMP kinase, thymidylat 75.5 2.8 9.4E-05 34.9 4.4 29 45-73 2-32 (195)
67 2pez_A Bifunctional 3'-phospho 74.1 3.4 0.00012 34.1 4.6 31 42-72 4-36 (179)
68 1cp2_A CP2, nitrogenase iron p 73.9 2.2 7.6E-05 37.9 3.5 30 44-73 2-33 (269)
69 3b9q_A Chloroplast SRP recepto 73.9 3.8 0.00013 37.5 5.2 33 42-74 99-133 (302)
70 2jeo_A Uridine-cytidine kinase 73.1 2.6 8.9E-05 37.0 3.8 25 41-65 23-49 (245)
71 1zuh_A Shikimate kinase; alpha 72.8 2.6 8.9E-05 34.4 3.5 26 41-66 5-32 (168)
72 2c5m_A CTP synthase; cytidine 72.6 4.6 0.00016 35.8 5.0 33 41-73 21-57 (294)
73 2f1r_A Molybdopterin-guanine d 72.5 3.4 0.00012 34.3 4.1 31 43-73 2-34 (171)
74 2woj_A ATPase GET3; tail-ancho 72.4 2.9 0.0001 39.2 4.1 32 43-74 17-53 (354)
75 3asz_A Uridine kinase; cytidin 72.1 2.6 8.9E-05 35.9 3.4 25 42-66 5-31 (211)
76 1odf_A YGR205W, hypothetical 3 71.2 3.5 0.00012 37.5 4.2 28 41-68 29-58 (290)
77 2og2_A Putative signal recogni 70.1 5 0.00017 37.7 5.1 33 42-74 156-190 (359)
78 3e70_C DPA, signal recognition 70.0 5.1 0.00017 37.1 5.1 33 42-74 128-162 (328)
79 2yvu_A Probable adenylyl-sulfa 69.5 5.4 0.00018 33.1 4.8 31 42-72 12-44 (186)
80 3dm5_A SRP54, signal recogniti 69.5 4.6 0.00016 39.1 4.8 32 43-74 100-133 (443)
81 3iqw_A Tail-anchored protein t 69.3 3.6 0.00012 38.3 3.9 25 50-74 25-49 (334)
82 2if2_A Dephospho-COA kinase; a 69.2 2.6 8.8E-05 35.7 2.7 25 44-72 2-28 (204)
83 2grj_A Dephospho-COA kinase; T 68.7 3.4 0.00012 35.0 3.4 28 42-72 11-40 (192)
84 3kb2_A SPBC2 prophage-derived 68.6 3.7 0.00013 33.3 3.5 22 44-65 2-25 (173)
85 1ls1_A Signal recognition part 68.2 5.6 0.00019 36.1 5.0 33 42-74 97-131 (295)
86 1rj9_A FTSY, signal recognitio 67.9 6.5 0.00022 36.0 5.3 33 42-74 101-135 (304)
87 2yhs_A FTSY, cell division pro 67.7 6 0.0002 38.9 5.2 33 42-74 292-326 (503)
88 2xxa_A Signal recognition part 67.2 6.1 0.00021 38.2 5.2 32 42-73 99-133 (433)
89 3kjh_A CO dehydrogenase/acetyl 67.1 2.1 7.1E-05 37.3 1.7 24 49-72 8-31 (254)
90 3ake_A Cytidylate kinase; CMP 67.0 4 0.00014 34.4 3.5 22 44-65 3-26 (208)
91 2i3b_A HCR-ntpase, human cance 66.7 4.1 0.00014 34.4 3.5 25 45-69 3-29 (189)
92 1uj2_A Uridine-cytidine kinase 65.7 3.8 0.00013 36.2 3.2 25 42-66 21-47 (252)
93 3tr0_A Guanylate kinase, GMP k 65.6 4 0.00014 34.3 3.2 24 42-65 6-31 (205)
94 3aez_A Pantothenate kinase; tr 65.2 5 0.00017 36.9 4.0 27 41-67 88-116 (312)
95 1jjv_A Dephospho-COA kinase; P 63.9 4.2 0.00014 34.4 3.0 20 44-63 3-24 (206)
96 1sq5_A Pantothenate kinase; P- 63.8 5 0.00017 36.7 3.7 26 41-66 78-105 (308)
97 1m7g_A Adenylylsulfate kinase; 63.8 10 0.00035 32.2 5.5 32 41-72 23-57 (211)
98 3io3_A DEHA2D07832P; chaperone 63.4 7.9 0.00027 36.2 5.0 33 42-74 17-53 (348)
99 4i1u_A Dephospho-COA kinase; s 62.0 6.1 0.00021 34.1 3.6 28 41-72 7-36 (210)
100 3tqc_A Pantothenate kinase; bi 61.7 6.3 0.00021 36.4 3.9 25 43-67 92-118 (321)
101 1cke_A CK, MSSA, protein (cyti 61.5 6.5 0.00022 33.6 3.9 23 43-65 5-29 (227)
102 4eun_A Thermoresistant glucoki 60.1 7.1 0.00024 32.9 3.8 24 42-65 28-53 (200)
103 1e6c_A Shikimate kinase; phosp 59.8 5.7 0.0002 32.2 3.0 22 44-65 3-26 (173)
104 3pzx_A Formate--tetrahydrofola 59.4 10 0.00035 37.0 5.0 60 15-74 17-94 (557)
105 1kht_A Adenylate kinase; phosp 59.0 8.9 0.0003 31.6 4.2 27 44-70 4-32 (192)
106 3lnc_A Guanylate kinase, GMP k 58.9 5.2 0.00018 34.6 2.8 25 42-66 26-53 (231)
107 1j8m_F SRP54, signal recogniti 58.9 9.3 0.00032 34.7 4.6 32 43-74 98-131 (297)
108 2j37_W Signal recognition part 58.7 9.9 0.00034 37.5 5.0 32 42-73 100-133 (504)
109 1uf9_A TT1252 protein; P-loop, 58.4 6.4 0.00022 32.9 3.2 29 41-73 6-36 (203)
110 3a00_A Guanylate kinase, GMP k 58.2 4.5 0.00015 33.7 2.1 23 44-66 2-26 (186)
111 2p67_A LAO/AO transport system 58.0 11 0.00036 35.0 4.9 34 41-74 54-89 (341)
112 1ye8_A Protein THEP1, hypothet 57.8 7.6 0.00026 32.3 3.5 22 45-66 2-25 (178)
113 3a4m_A L-seryl-tRNA(SEC) kinas 57.7 10 0.00035 33.5 4.6 32 42-73 3-36 (260)
114 2plr_A DTMP kinase, probable t 56.6 8.5 0.00029 32.3 3.7 27 43-69 4-32 (213)
115 2j41_A Guanylate kinase; GMP, 56.6 5.9 0.0002 33.2 2.7 24 42-65 5-30 (207)
116 2ffh_A Protein (FFH); SRP54, s 56.0 11 0.00039 36.1 4.8 32 43-74 98-131 (425)
117 1kag_A SKI, shikimate kinase I 55.9 6 0.00021 32.2 2.5 23 44-66 5-29 (173)
118 4ehx_A Tetraacyldisaccharide 4 55.5 7 0.00024 36.0 3.1 29 42-70 35-67 (315)
119 2qt1_A Nicotinamide riboside k 55.2 7.3 0.00025 32.9 3.0 25 41-65 19-45 (207)
120 3p32_A Probable GTPase RV1496/ 55.1 18 0.00062 33.6 6.0 34 41-74 77-112 (355)
121 1ihu_A Arsenical pump-driving 55.0 13 0.00044 37.3 5.3 32 42-73 7-40 (589)
122 2pt5_A Shikimate kinase, SK; a 54.7 8.8 0.0003 30.9 3.4 21 45-65 2-24 (168)
123 1qf9_A UMP/CMP kinase, protein 54.3 10 0.00034 31.2 3.7 23 43-65 6-30 (194)
124 1knq_A Gluconate kinase; ALFA/ 54.3 11 0.00036 30.7 3.8 24 42-65 7-32 (175)
125 2iyv_A Shikimate kinase, SK; t 53.9 7.5 0.00026 32.0 2.8 22 44-65 3-26 (184)
126 1y63_A LMAJ004144AAA protein; 53.4 10 0.00036 31.3 3.6 23 42-64 9-33 (184)
127 3tau_A Guanylate kinase, GMP k 53.3 7.3 0.00025 33.1 2.7 26 41-66 6-33 (208)
128 2c95_A Adenylate kinase 1; tra 53.1 10 0.00035 31.4 3.6 24 42-65 8-33 (196)
129 2eyu_A Twitching motility prot 53.1 14 0.00048 32.8 4.7 28 41-68 23-52 (261)
130 2qm8_A GTPase/ATPase; G protei 53.0 23 0.00078 32.7 6.3 34 41-74 53-88 (337)
131 3hjn_A DTMP kinase, thymidylat 52.4 8.7 0.0003 32.5 3.0 22 52-73 11-32 (197)
132 1q3t_A Cytidylate kinase; nucl 51.1 12 0.00043 32.3 3.9 31 41-74 14-46 (236)
133 1xx6_A Thymidine kinase; NESG, 50.4 22 0.00074 29.9 5.2 34 41-74 6-41 (191)
134 2f6r_A COA synthase, bifunctio 50.0 11 0.00038 33.8 3.5 27 42-72 74-102 (281)
135 3vaa_A Shikimate kinase, SK; s 50.0 13 0.00044 31.1 3.8 24 42-65 24-49 (199)
136 3t61_A Gluconokinase; PSI-biol 49.2 12 0.0004 31.4 3.3 24 42-65 17-42 (202)
137 4tmk_A Protein (thymidylate ki 48.8 18 0.00061 31.0 4.5 30 43-72 3-35 (213)
138 4edh_A DTMP kinase, thymidylat 48.8 20 0.00068 30.7 4.8 31 43-73 6-38 (213)
139 2v3c_C SRP54, signal recogniti 48.6 12 0.00041 36.1 3.6 31 44-74 100-132 (432)
140 1vht_A Dephospho-COA kinase; s 47.8 13 0.00044 31.6 3.4 26 43-72 4-31 (218)
141 1zak_A Adenylate kinase; ATP:A 47.0 8.9 0.0003 32.8 2.3 23 44-66 6-30 (222)
142 2vli_A Antibiotic resistance p 46.6 9.4 0.00032 31.2 2.3 24 42-65 4-29 (183)
143 4eaq_A DTMP kinase, thymidylat 46.2 15 0.00051 31.8 3.6 31 42-73 25-57 (229)
144 1znw_A Guanylate kinase, GMP k 46.0 13 0.00044 31.4 3.1 26 41-66 18-45 (207)
145 2w0m_A SSO2452; RECA, SSPF, un 45.8 24 0.00083 29.7 4.9 31 42-72 22-54 (235)
146 1lvg_A Guanylate kinase, GMP k 45.7 12 0.00042 31.4 2.9 24 43-66 4-29 (198)
147 2v54_A DTMP kinase, thymidylat 45.6 16 0.00053 30.5 3.6 24 42-65 3-28 (204)
148 4e22_A Cytidylate kinase; P-lo 44.8 14 0.00049 32.4 3.3 25 41-65 25-51 (252)
149 2cdn_A Adenylate kinase; phosp 44.2 20 0.00067 29.9 4.0 23 43-65 20-44 (201)
150 3trf_A Shikimate kinase, SK; a 44.0 18 0.0006 29.6 3.6 23 43-65 5-29 (185)
151 3jvv_A Twitching mobility prot 43.7 23 0.0008 33.0 4.7 31 42-72 122-155 (356)
152 2b8t_A Thymidine kinase; deoxy 43.5 28 0.00096 30.1 4.9 33 41-73 10-44 (223)
153 1yrb_A ATP(GTP)binding protein 43.4 14 0.00047 32.3 3.0 30 42-72 13-44 (262)
154 1aky_A Adenylate kinase; ATP:A 43.4 19 0.00064 30.6 3.8 25 41-65 2-28 (220)
155 1kgd_A CASK, peripheral plasma 43.3 16 0.00054 30.1 3.2 25 42-66 4-30 (180)
156 1ukz_A Uridylate kinase; trans 43.3 16 0.00053 30.6 3.2 25 41-65 13-39 (203)
157 3lv8_A DTMP kinase, thymidylat 42.8 28 0.00096 30.3 4.9 29 43-71 27-57 (236)
158 3ld9_A DTMP kinase, thymidylat 42.8 22 0.00075 30.8 4.1 33 41-73 19-54 (223)
159 2www_A Methylmalonic aciduria 42.7 29 0.001 32.1 5.2 33 42-74 73-107 (349)
160 3igf_A ALL4481 protein; two-do 42.4 11 0.00037 35.6 2.2 28 50-77 11-38 (374)
161 3nva_A CTP synthase; rossman f 42.4 28 0.00095 34.3 5.1 31 43-73 3-37 (535)
162 1gtv_A TMK, thymidylate kinase 42.3 8 0.00027 32.6 1.2 28 45-72 2-31 (214)
163 3lw7_A Adenylate kinase relate 42.2 19 0.00066 28.7 3.5 26 44-73 2-29 (179)
164 2bbw_A Adenylate kinase 4, AK4 42.1 20 0.00067 31.2 3.8 24 42-65 26-51 (246)
165 2r8r_A Sensor protein; KDPD, P 42.1 21 0.00072 31.0 3.8 29 45-73 10-38 (228)
166 4a0g_A Adenosylmethionine-8-am 41.8 18 0.0006 38.1 3.9 31 42-72 33-71 (831)
167 1dek_A Deoxynucleoside monopho 41.5 17 0.00057 32.0 3.1 26 44-72 2-29 (241)
168 1ko7_A HPR kinase/phosphatase; 41.5 30 0.001 31.6 5.0 27 4-30 83-109 (314)
169 2jaq_A Deoxyguanosine kinase; 41.0 20 0.00067 29.7 3.5 22 45-66 2-25 (205)
170 2orw_A Thymidine kinase; TMTK, 40.6 31 0.0011 28.5 4.7 30 43-72 3-34 (184)
171 1p9r_A General secretion pathw 40.4 27 0.00091 33.4 4.6 26 41-66 165-192 (418)
172 2bwj_A Adenylate kinase 5; pho 40.1 20 0.00068 29.6 3.4 24 43-66 12-37 (199)
173 1zp6_A Hypothetical protein AT 39.7 18 0.00061 29.7 3.0 23 42-64 8-32 (191)
174 3iij_A Coilin-interacting nucl 39.6 21 0.00071 29.1 3.4 24 42-65 10-35 (180)
175 1qhx_A CPT, protein (chloramph 39.5 17 0.00058 29.5 2.8 23 44-66 4-28 (178)
176 3v9p_A DTMP kinase, thymidylat 39.4 28 0.00096 30.1 4.3 31 42-72 24-60 (227)
177 2ewv_A Twitching motility prot 39.3 28 0.00097 32.6 4.6 28 41-68 134-163 (372)
178 3do6_A Formate--tetrahydrofola 39.2 34 0.0012 33.2 5.0 40 33-72 32-78 (543)
179 3cm0_A Adenylate kinase; ATP-b 39.1 19 0.00066 29.4 3.1 23 43-65 4-28 (186)
180 1tev_A UMP-CMP kinase; ploop, 38.9 23 0.00077 29.0 3.5 22 44-65 4-27 (196)
181 2rhm_A Putative kinase; P-loop 38.8 23 0.00078 29.0 3.5 24 42-65 4-29 (193)
182 1via_A Shikimate kinase; struc 38.8 18 0.00063 29.3 2.9 22 44-65 5-28 (175)
183 2gks_A Bifunctional SAT/APS ki 38.0 27 0.00092 34.7 4.4 31 42-72 371-403 (546)
184 3ec2_A DNA replication protein 37.9 76 0.0026 25.5 6.7 31 42-72 37-70 (180)
185 1x6v_B Bifunctional 3'-phospho 37.8 43 0.0015 33.9 5.8 31 42-72 51-83 (630)
186 2bdt_A BH3686; alpha-beta prot 37.2 21 0.00072 29.3 3.0 20 44-63 3-24 (189)
187 2kjq_A DNAA-related protein; s 36.3 41 0.0014 26.7 4.5 31 42-72 35-67 (149)
188 1htw_A HI0065; nucleotide-bind 35.3 26 0.00089 28.3 3.2 25 41-65 31-57 (158)
189 1tue_A Replication protein E1; 35.1 37 0.0013 29.1 4.2 50 16-66 29-83 (212)
190 3lfu_A DNA helicase II; SF1 he 34.4 21 0.00073 35.9 3.1 28 42-70 24-52 (647)
191 1cr0_A DNA primase/helicase; R 34.2 47 0.0016 29.5 5.1 32 41-72 33-67 (296)
192 3hdt_A Putative kinase; struct 33.7 30 0.001 29.8 3.5 28 42-72 13-42 (223)
193 2j9r_A Thymidine kinase; TK1, 33.6 57 0.0019 28.0 5.2 33 41-73 26-60 (214)
194 3kta_A Chromosome segregation 33.6 23 0.00078 28.9 2.6 23 44-66 27-51 (182)
195 2nu8_B SCS-beta, succinyl-COA 32.6 2.2E+02 0.0075 26.6 9.6 93 269-368 284-386 (388)
196 2fp4_B Succinyl-COA ligase [GD 31.7 1.7E+02 0.006 27.4 8.8 92 270-368 292-393 (395)
197 3fb4_A Adenylate kinase; psych 31.2 34 0.0011 28.7 3.4 25 45-72 2-28 (216)
198 2h92_A Cytidylate kinase; ross 30.9 25 0.00086 29.6 2.5 27 44-73 4-32 (219)
199 1m8p_A Sulfate adenylyltransfe 30.9 41 0.0014 33.6 4.4 31 42-72 395-428 (573)
200 1ak2_A Adenylate kinase isoenz 30.8 41 0.0014 28.8 3.9 25 42-66 15-41 (233)
201 3be4_A Adenylate kinase; malar 30.8 32 0.0011 29.1 3.2 22 44-65 6-29 (217)
202 3nwj_A ATSK2; P loop, shikimat 30.4 32 0.0011 30.2 3.2 23 43-65 48-72 (250)
203 1mkz_A Molybdenum cofactor bio 29.4 1.1E+02 0.0036 25.0 6.1 45 335-379 31-79 (172)
204 2oap_1 GSPE-2, type II secreti 29.1 19 0.00065 35.5 1.5 25 42-66 259-285 (511)
205 3r20_A Cytidylate kinase; stru 28.6 43 0.0015 29.1 3.6 33 42-77 8-42 (233)
206 1s96_A Guanylate kinase, GMP k 28.4 36 0.0012 29.2 3.1 26 41-66 14-41 (219)
207 3upu_A ATP-dependent DNA helic 28.4 27 0.00093 33.6 2.5 26 45-70 47-74 (459)
208 1g8f_A Sulfate adenylyltransfe 28.0 34 0.0012 33.7 3.1 26 42-67 394-421 (511)
209 2wsm_A Hydrogenase expression/ 27.8 52 0.0018 27.5 4.0 26 42-67 29-56 (221)
210 1nij_A Hypothetical protein YJ 27.0 29 0.001 31.6 2.4 23 42-64 3-27 (318)
211 1ly1_A Polynucleotide kinase; 26.5 40 0.0014 27.0 3.0 20 44-63 3-24 (181)
212 2ehv_A Hypothetical protein PH 26.1 81 0.0028 26.7 5.1 23 41-63 28-52 (251)
213 4gns_A Chitin biosynthesis pro 26.1 16 0.00056 29.9 0.4 37 12-50 214-250 (290)
214 2v9p_A Replication protein E1; 26.0 58 0.002 29.6 4.1 28 41-70 124-153 (305)
215 2olj_A Amino acid ABC transpor 25.9 38 0.0013 30.0 2.9 25 41-65 48-74 (263)
216 3dl0_A Adenylate kinase; phosp 25.1 44 0.0015 28.0 3.0 26 45-73 2-29 (216)
217 3tlx_A Adenylate kinase 2; str 25.0 56 0.0019 28.2 3.8 30 41-73 27-58 (243)
218 3hh1_A Tetrapyrrole methylase 25.0 1.7E+02 0.0057 21.9 6.1 65 317-383 25-94 (117)
219 3sho_A Transcriptional regulat 24.7 1.1E+02 0.0037 24.8 5.4 23 279-301 25-47 (187)
220 3fdi_A Uncharacterized protein 24.7 43 0.0015 28.1 2.9 27 43-72 6-34 (201)
221 1zd8_A GTP:AMP phosphotransfer 24.5 40 0.0014 28.6 2.7 24 42-65 6-31 (227)
222 1b0u_A Histidine permease; ABC 24.1 43 0.0015 29.5 2.9 25 41-65 30-56 (262)
223 3kbq_A Protein TA0487; structu 23.9 57 0.0019 26.9 3.3 46 334-379 25-72 (172)
224 2zu0_C Probable ATP-dependent 23.7 53 0.0018 29.0 3.4 24 41-64 44-69 (267)
225 2yz2_A Putative ABC transporte 23.5 46 0.0016 29.4 2.9 25 41-65 31-57 (266)
226 2onk_A Molybdate/tungstate ABC 23.4 53 0.0018 28.6 3.2 24 41-65 23-48 (240)
227 2pcj_A ABC transporter, lipopr 23.3 41 0.0014 28.9 2.5 24 42-65 29-54 (224)
228 2w58_A DNAI, primosome compone 23.0 81 0.0028 25.9 4.3 29 44-72 55-85 (202)
229 3oz7_A Phosphoglycerate kinase 22.9 2.9E+02 0.0099 26.2 8.3 46 291-342 205-250 (417)
230 3pzy_A MOG; ssgcid, seattle st 22.9 1.1E+02 0.0037 24.8 4.9 46 333-379 28-76 (164)
231 1vpl_A ABC transporter, ATP-bi 22.5 49 0.0017 29.1 2.9 25 41-65 39-65 (256)
232 2pjk_A 178AA long hypothetical 22.5 1E+02 0.0035 25.4 4.7 46 334-379 42-91 (178)
233 3b85_A Phosphate starvation-in 22.3 58 0.002 27.6 3.2 23 42-64 21-45 (208)
234 1y5e_A Molybdenum cofactor bio 22.3 80 0.0027 25.7 4.0 45 335-379 34-82 (169)
235 2ze6_A Isopentenyl transferase 21.7 65 0.0022 28.1 3.5 22 44-65 2-25 (253)
236 2d2e_A SUFC protein; ABC-ATPas 21.7 60 0.002 28.3 3.2 24 41-64 27-52 (250)
237 1e4v_A Adenylate kinase; trans 21.6 60 0.002 27.2 3.2 24 46-72 3-28 (214)
238 1z6g_A Guanylate kinase; struc 21.3 48 0.0016 28.1 2.5 24 42-65 22-47 (218)
239 1ji0_A ABC transporter; ATP bi 21.1 52 0.0018 28.5 2.7 24 42-65 31-56 (240)
240 2ixe_A Antigen peptide transpo 21.0 55 0.0019 29.0 2.9 25 41-65 43-69 (271)
241 3rfq_A Pterin-4-alpha-carbinol 21.0 73 0.0025 26.5 3.5 46 334-379 51-99 (185)
242 1g6h_A High-affinity branched- 20.9 53 0.0018 28.8 2.7 24 42-65 32-57 (257)
243 3e1s_A Exodeoxyribonuclease V, 20.9 1.4E+02 0.0047 29.7 6.0 33 42-74 203-237 (574)
244 2xb4_A Adenylate kinase; ATP-b 20.7 68 0.0023 27.2 3.4 21 45-65 2-24 (223)
245 2nq2_C Hypothetical ABC transp 20.6 53 0.0018 28.8 2.7 24 42-65 30-55 (253)
246 2is8_A Molybdopterin biosynthe 20.6 76 0.0026 25.7 3.5 46 334-379 23-72 (164)
247 2vp4_A Deoxynucleoside kinase; 20.5 40 0.0014 28.8 1.8 24 41-64 18-43 (230)
248 1mv5_A LMRA, multidrug resista 20.4 55 0.0019 28.4 2.7 26 41-66 26-53 (243)
249 2qor_A Guanylate kinase; phosp 20.4 50 0.0017 27.5 2.4 24 42-65 11-36 (204)
250 1ihu_A Arsenical pump-driving 20.2 65 0.0022 32.0 3.6 31 44-74 327-360 (589)
251 2yv5_A YJEQ protein; hydrolase 20.2 91 0.0031 28.0 4.2 28 33-62 157-186 (302)
No 1
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=100.00 E-value=4.7e-70 Score=544.25 Aligned_cols=374 Identities=25% Similarity=0.397 Sum_probs=320.4
Q ss_pred ceeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeeccCchh
Q 015701 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (402)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~g~~ 81 (402)
++++|+||+++++||++++|+++|+|+++++++++++. +.++|+||||||||||++||+++|+..|.++.++|++|.|
T Consensus 73 ~d~vv~spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~--~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gnig~~ 150 (451)
T 3lk7_A 73 FCYMIKNPGIPYNNPMVKKALEKQIPVLTEVELAYLVS--ESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNIGFP 150 (451)
T ss_dssp EEEEEECTTSCTTSHHHHHHHHTTCCEECHHHHHHHHC--CSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEETSSSC
T ss_pred CCEEEECCcCCCCChhHHHHHHCCCcEEeHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeeecChh
Confidence 47899999999999999999999999999999999987 4599999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEE
Q 015701 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (402)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~ 161 (402)
++.... ...+.+++|+|+|+++++.++. ++|+++|||||++||+|+|+|+|+|+++|.+|++.+++++.+|+
T Consensus 151 ~~~~~~-------~~~~~d~~VlE~~s~~l~~~~~-~~p~iaviTNI~~DHld~~gt~e~i~~aK~~i~~~~~~~~~~V~ 222 (451)
T 3lk7_A 151 ASEVVQ-------AANDKDTLVMELSSFQLMGVKE-FRPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVL 222 (451)
T ss_dssp HHHHTT-------TCCTTCEEEEECCHHHHTTCSS-CCCSEEEECCCCSCCHHHHSSHHHHHHHHHGGGTTCCTTSEEEE
T ss_pred hhhhhh-------cCCCCCEEEEECCccccccccc-cCCCEEEEcCCChhHhhhcCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 875432 1235788999999998887765 89999999999999999999999999999999999888999999
Q ss_pred eCCChhhHHHhhcccccEEEeecCCCc-eeccccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHcCC
Q 015701 162 PFGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240 (402)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~lgi 240 (402)
|.|||.+..++.....++++|+.+... .+.... ..+.+. +. ..+....++++|.||++|+++|+ ++++.+|+
T Consensus 223 n~dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~--~~-~~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi 295 (451)
T 3lk7_A 223 NFNQGISKELAKTTKATIVPFSTTEKVDGAYVQD--KQLFYK--GE-NIMSVDDIGVPGSHNVENALATI--AVAKLAGI 295 (451)
T ss_dssp ETTSHHHHHHHTTCSSEEEEEESSSCCSSEEEET--TEEEET--TE-EEEEGGGSSSCSHHHHHHHHHHH--HHHHHHTC
T ss_pred ECCcHHHHHHHhhcCCeEEEEccCCCcCCEEEEC--CEEEEC--Cc-EEeeccccCCCcHHHHHHHHHHH--HHHHHcCC
Confidence 999999988887777788899875432 010000 122221 21 11223579999999999999999 89999999
Q ss_pred CHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccCCCcEEEEEcCCCCcCCCCCCcchHhhhhc
Q 015701 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP 320 (402)
Q Consensus 241 ~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~ 320 (402)
+.+.|.++|++|+++|||||++. ..+++.+|||||||||+|+.++++.++++|+++|+|++. ++. .++++++.
T Consensus 296 ~~~~i~~~L~~f~~~~gR~e~v~-~~~g~~vi~D~~a~np~a~~~al~~~~~~rii~I~g~~~-r~~-----d~~~l~~~ 368 (451)
T 3lk7_A 296 SNQVIRETLSNFGGVKHRLQSLG-KVHGISFYNDSKSTNILATQKALSGFDNTKVILIAGGLD-RGN-----EFDELIPD 368 (451)
T ss_dssp CHHHHHHHHHHCCCCTTSSEEEE-EETTEEEEECTTCCSHHHHHHHHHTSCGGGEEEEECCSC-CSC-----CCGGGHHH
T ss_pred CHHHHHHHHHhCCCCCCcEEEEe-eeCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEEEECCCC-CCC-----CHHHHHHH
Confidence 99999999999999999999996 367899999999999999999999997667899998653 221 35567766
Q ss_pred cccccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCcccccccChhHHhHHHHHHHh
Q 015701 321 LNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAF 400 (402)
Q Consensus 321 l~~~d~vi~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~~s~~~~~~~~~r~~~~~~~~~ 400 (402)
+..+|.++++|...+.+.+.++..+. ++.+++|+++|++.+.+.+++||+||++|++.||++|++|++||+.|+++|+
T Consensus 369 l~~~d~vi~~G~~~~~l~~~~~~~g~--~~~~~~~~~eAv~~a~~~a~~gD~VLlspa~as~d~f~~~~~RG~~F~~~v~ 446 (451)
T 3lk7_A 369 ITGLKHMVVLGESASRVKRAAQKAGV--TYSDALDVRDAVHKAYEVAQQGDVILLSPANASWDMYKNFEVRGDEFIDTFE 446 (451)
T ss_dssp HTTCSEEEECSTTHHHHHHHHHHTTC--CEEECSSHHHHHHHHHHHCCTTCEEEECCSSCSTTTSSSHHHHHHHHHHHHH
T ss_pred HHhcCEEEEECCCHHHHHHHHHhcCC--ceEEeCCHHHHHHHHHHhCCCCCEEEEcCcCcchhhhhCHHHHHHHHHHHHH
Confidence 66689999999999999888876654 4667899999999999999999999999999999999999999999999997
Q ss_pred c
Q 015701 401 S 401 (402)
Q Consensus 401 ~ 401 (402)
+
T Consensus 447 ~ 447 (451)
T 3lk7_A 447 S 447 (451)
T ss_dssp H
T ss_pred H
Confidence 5
No 2
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=100.00 E-value=1.2e-64 Score=503.81 Aligned_cols=365 Identities=28% Similarity=0.432 Sum_probs=303.5
Q ss_pred eeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeeccCchhh
Q 015701 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (402)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~g~~~ 82 (402)
.++|+||+++++||++..|++++++++++++++++.+ +.++|+||||||||||++||+++|++.|+++++.|++|.|+
T Consensus 66 d~vV~s~gi~~~~p~~~~a~~~~~~v~~~~~~~~~~~--~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gnig~~~ 143 (439)
T 2x5o_A 66 DLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREA--QAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPA 143 (439)
T ss_dssp SEEEECTTSCTTCHHHHHHHHTTCEEECHHHHHHHHC--CSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEESSSBCH
T ss_pred CEEEeCCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEecccCHHH
Confidence 5899999999999999999999999999999999986 48999999999999999999999999999999999999998
Q ss_pred hhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEEEEecCCcchhcCC-CCHHHHHHHHHHhccccCCCeEEEE
Q 015701 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLL 161 (402)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~~~-~t~e~i~~~k~~i~~~~~~~~~~v~ 161 (402)
+... ..+.+++|+|+|+++++.++. ++|+++|||||++||+++| +|+|+|+++|.++++. .+.+|+
T Consensus 144 ~~~~---------~~~~d~~VlE~~~~~l~~~~~-~~p~vaviTNI~~DHld~~G~t~e~i~~~K~~i~~~---~~~~V~ 210 (439)
T 2x5o_A 144 LMLL---------DDECELYVLELSSFQLETTSS-LQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKVCVV 210 (439)
T ss_dssp HHHC---------CTTCCEEEEECCHHHHHTCCC-CCCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTT---CSEEEE
T ss_pred HHHh---------CCCCCEEEEECCchhhccccc-CCCCEEEEeCCChhhcccccCCHHHHHHHHHHHHcC---CCEEEE
Confidence 7642 123588999999998988765 8999999999999999999 8999999999999983 689999
Q ss_pred eCCChhhHHHhhcccccEEEeecCCC-ce-eccccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHcC
Q 015701 162 PFGNQHLNEAIKGHRFNLAWIGAFPG-VK-IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG 239 (402)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~lg 239 (402)
|.|||.+..+... ..++++|+.+.. +. +.... ..+.+. .+. ..+....++++|.||++|+++|+ ++++.+|
T Consensus 211 n~dd~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~--~~~~~~-~~~-~~~~~~~l~l~G~hn~~NalaA~--a~~~~lg 283 (439)
T 2x5o_A 211 NADDALTMPIRGA-DERCVSFGVNMGDYHLNHQQG--ETWLRV-KGE-KVLNVKEMKLSGQHNYTNALAAL--ALADAAG 283 (439)
T ss_dssp ETTCGGGSCSCCC-SSCCEEECSSSSSEEEEEETT--EEEEEE-TTE-EEEEGGGCSCCSHHHHHHHHHHH--HHHHHTT
T ss_pred eCCCHHHHHHhhc-CCcEEEEeCCCcCcCcEEEEC--CEEEEe-CCc-EEEeehhcCCCCHHHHHHHHHHH--HHHHHcC
Confidence 9999987666543 457788886421 11 11111 112221 111 11112478999999999999999 8999999
Q ss_pred CCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccCC-CcEEEEEcCCCCcCCCCCCcchHhhh
Q 015701 240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAKVLNGQESNGFEKLI 318 (402)
Q Consensus 240 i~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~-~~~i~V~g~~~~~~~~~~~~~~~~~~ 318 (402)
++.+.|.++|++|+++|||||++. ..+++.+|||||||||+|++++++.++. +|+++|+|++.+.+ .+.+++
T Consensus 284 i~~~~i~~~L~~f~~~~gR~e~~~-~~~~~~vi~Ds~a~np~a~~~al~~l~~~~~~i~v~g~~~k~~------~~~~~~ 356 (439)
T 2x5o_A 284 LPRASSLKALTTFTGLPHRFEVVL-EHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSA------DFSPLA 356 (439)
T ss_dssp CCHHHHHHHHHHCCCCTTSSEEEE-EETTEEEEECTTCCSHHHHHHHHTTCCCSSCEEEEEESBCTTC------CCGGGG
T ss_pred CCHHHHHHHHHhCCCCCCceEEEE-EECCEEEEEeCCCCCHHHHHHHHHhCCcCCCEEEEEcCCCCCC------CHHHHH
Confidence 999999999999999999999996 3578899999999999999999999963 68999999864332 234566
Q ss_pred hcccc-ccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCcccccccChhHHhHHHHH
Q 015701 319 EPLNH-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397 (402)
Q Consensus 319 ~~l~~-~d~vi~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~~s~~~~~~~~~r~~~~~~ 397 (402)
+.+.. +|.++++|+..+.+.+ +... .+.+++|+++|++.+.+.+++||+||++++++||+.|++|++||+.|++
T Consensus 357 ~~l~~~~d~vi~~g~~~~~~~~-~~~~----~~~~~~~~~~a~~~~~~~~~~gd~vL~~~a~~S~~~~~~~~~RG~~f~~ 431 (439)
T 2x5o_A 357 RYLNGDNVRLYCFGRDGAQLAA-LRPE----VAEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFAR 431 (439)
T ss_dssp GGSCSSSEEEEEESTTHHHHHT-TSGG----GEEECSSHHHHHHHHGGGCCTTCEEEECCSSBSTTTSSSHHHHHHHHHH
T ss_pred HHHHhhCCEEEEECCCHHHHHH-HhcC----CccccCCHHHHHHHHHHhCCCCCEEEEcchhhHhhhhhCHHHHHHHHHH
Confidence 66654 7899999988877665 4221 2456789999999999999999999999999999999999999999999
Q ss_pred HHhc
Q 015701 398 LAFS 401 (402)
Q Consensus 398 ~~~~ 401 (402)
+|++
T Consensus 432 ~v~~ 435 (439)
T 2x5o_A 432 LAKE 435 (439)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9975
No 3
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=100.00 E-value=2e-59 Score=471.82 Aligned_cols=363 Identities=15% Similarity=0.225 Sum_probs=285.4
Q ss_pred ceeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCc-ee-eeccCc
Q 015701 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE-AF-VGGNLG 79 (402)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~-~~-~~g~~g 79 (402)
.+++|+||+++++||++++|+++|+|+++++|+++++. +..++|+||||||||||++||+++|+..|.+ +. ++|+.+
T Consensus 82 ~d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e~l~~~~-~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~~gg~~~ 160 (494)
T 4hv4_A 82 ASVVVVSTAISADNPEIVAAREARIPVIRRAEMLAELM-RYRHGIAVAGTHGKTTTTAMLSSIYAEAGLDPTFVNGGLVK 160 (494)
T ss_dssp CSEEEECTTSCTTCHHHHHHHHTTCCEEEHHHHHHHHH-TTSEEEEEECSSSHHHHHHHHHHHHHHTTCCCEEEEEEEET
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCCCEEcHHHHHHHHh-cCCCEEEEecCCChHHHHHHHHHHHHhcCCCCEEEECCccc
Confidence 46899999999999999999999999999999999987 5668999999999999999999999999985 33 344433
Q ss_pred hhhhhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEEEEecCCcchhcCC-CCHHHHHHHHHHhccccCCCeE
Q 015701 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKL 158 (402)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~~~-~t~e~i~~~k~~i~~~~~~~~~ 158 (402)
.+.... . ..+.+++|+|+|++...+ ..++|+++|||||++||+|+| +|+|+|+++|.++++.+++++.
T Consensus 161 -~~g~~~----~----~~~~d~~VlE~~e~~~s~--~~~~P~iaVITNI~~DHld~~G~t~e~~a~aK~~i~~~~~~~g~ 229 (494)
T 4hv4_A 161 -AAGTHA----R----LGSSRYLIAEADESDASF--LHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGR 229 (494)
T ss_dssp -TTTEEE----E----CCSSSEEEEECCCGGGGG--GGCCCSEEEECCCCCSSCCSSTTHHHHHHHHHHHHHTTSCTTCE
T ss_pred -cccccc----c----cCCCcEEEEEcccccccc--ccccCCEEEEcCCCHHHhhhhccCHHHHHHHHHHHHhcCCCCCE
Confidence 222110 0 124688999999654332 247999999999999999999 8999999999999998888999
Q ss_pred EEEeCCChhhHHHhhcccccEEEeecCCCceecc-----ccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHH
Q 015701 159 GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT-----EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV 233 (402)
Q Consensus 159 ~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a 233 (402)
+|+|.|||.+..+......++++||.....++.. +.....|.+...+.. ...+.++++|.||++|+++|+ +
T Consensus 230 ~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~--~~~~~l~l~G~hnv~NalaAi--a 305 (494)
T 4hv4_A 230 AVMCIDDPVVRELLPRVGRHITTYGFSDDADVQIASYRQEGPQGHFTLRRQDKP--LIEVTLNAPGRHNALNAAAAV--A 305 (494)
T ss_dssp EEEETTSHHHHHHGGGCCSCEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSC--CEEEEESSCSHHHHHHHHHHH--H
T ss_pred EEEECCCHHHHHHHHhcCCCEEEEecCCCCceEEEEEEEeCCEEEEEEEECCce--EEEEEecCCcHHHHHHHHHHH--H
Confidence 9999999999988877777888998753322211 112223333322210 112468999999999999999 8
Q ss_pred HHHHcCCCHHHHHHHhhcCCCCCCceeEEEeec---------CCeEEEEcCCCCCHHHHHHHHccc----CCCcEEEEEc
Q 015701 234 LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI---------QGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLG 300 (402)
Q Consensus 234 ~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~---------~~~~iidD~~a~np~s~~~al~~~----~~~~~i~V~g 300 (402)
+++.+|++.+.|.++|++|+++|||||++.. . +++.+||| |||||.++.++++.+ +++|+++|+|
T Consensus 306 ~a~~lgi~~~~i~~~L~~f~g~~~R~e~v~~-~~~~~~~~~~~g~~vi~D-yaHnp~~i~a~l~al~~~~~~~rii~V~g 383 (494)
T 4hv4_A 306 VATEEGIEDEDILRALVGFQGTGRRFDFLGN-FPLAPVNGKEGSAMLVDD-YGHHPTEVDATIKAARAGWPDKRIVMLFQ 383 (494)
T ss_dssp HHHHHTCCHHHHHHHHHHCCCBTTSSEEEEE-EESHHHHSCSSEEEEEEE-CCCSHHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred HHHHcCCCHHHHHHHHHhCCCCCCccEEeee-ccccccccCCCCeEEEEe-CCCCHHHHHHHHHHHHhhcCCCeEEEEEc
Confidence 9999999999999999999999999999963 3 47899999 599999999988765 3458999998
Q ss_pred CCCCcCCCCCCcchHhhhhccccccEEEEe-----------CCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCC
Q 015701 301 GQAKVLNGQESNGFEKLIEPLNHHRCVITF-----------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN 369 (402)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~l~~~d~vi~~-----------g~~~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~ 369 (402)
++.... .+..+.++++.+..+|.++++ |...+.+.+.++..+. ..+.+++|+++|++.+.+.+++
T Consensus 384 ~~~~~r---~k~~~~~~~~~~~~aD~vilt~~~~~~e~p~~g~~~~~l~~~~~~~g~-~~~~~~~~~~eAv~~a~~~a~~ 459 (494)
T 4hv4_A 384 PHRYTR---TRDLYDDFANVLSQVDVLLMLDVYAAGEPPIPGADSRALCRTIRNRGK-LDPILVPDSESAPEMLAQILNG 459 (494)
T ss_dssp CBCHHH---HHHTHHHHHHHHTTSSEEEEECCBCTTCCCCTTCSHHHHHHHHHTTTS-CCCEEECCTTTHHHHHHHHCCT
T ss_pred CCCCCc---hHHHHHHHHHHHhcCCEEEEeCCcCCccCCcCCccHHHHHHHHHhhCC-CCeEEeCCHHHHHHHHHHhCCC
Confidence 654321 122456677766668888885 3345778888876542 2456788999999999999999
Q ss_pred CCEEEEcCCCcccccccC
Q 015701 370 GDAIVLSPGCASFDEFRN 387 (402)
Q Consensus 370 ~d~vll~~G~~s~~~~~~ 387 (402)
||+||++ |++||+.+..
T Consensus 460 gDvVL~~-GaG~~~~~~~ 476 (494)
T 4hv4_A 460 EDLILVQ-GAGNIGKIAR 476 (494)
T ss_dssp TEEEEEE-CSSTHHHHHH
T ss_pred CCEEEEE-CCCCHHHHHH
Confidence 9999996 9999876643
No 4
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=1.9e-58 Score=467.70 Aligned_cols=375 Identities=18% Similarity=0.213 Sum_probs=275.6
Q ss_pred ceeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCcee-e-ec---
Q 015701 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF-V-GG--- 76 (402)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~-~-~g--- 76 (402)
.+++|+||+++++||++++|+++|+|+++++|++++.+.+..++|+||||||||||++||+++|++.|.++. . +|
T Consensus 81 ~d~vV~Spgi~~~~p~l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G~~~~~~iGg~~~ 160 (524)
T 3hn7_A 81 PDLVVVGNAMKRGMDVIEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAGIDAGFLIGGVPL 160 (524)
T ss_dssp CSEEEECTTCCTTSHHHHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTTCCCEEECSCCBC
T ss_pred CCEEEECCCcCCCCHHHHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCEec
Confidence 478999999999999999999999999999999998532567899999999999999999999999998763 2 22
Q ss_pred ----------cCchhhhhhhhhhccCC---CCCCCccEEEEEeCcccccCC---C--ccccccEEEEecCCcchhcCCCC
Q 015701 77 ----------NLGNPLSEAAFHCIALP---SSKPKFQVAVVEVSSYQMEIP---N--KYFCPTVSVVLNLTPDHLERHKT 138 (402)
Q Consensus 77 ----------~~g~~~~~~~~~~~~~~---~~~~~~~~~V~E~~~~~l~~~---~--~~~~p~i~iiTni~~dH~~~~~t 138 (402)
++|.+.... ..+ ...++++++|+|+|+++.... . ..++|+++|||||++||+|+|+|
T Consensus 161 ~~~T~~nln~~ig~~~~~~-----~~~~~~~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~iaViTNI~~DHLd~~gs 235 (524)
T 3hn7_A 161 VNTTDTNLQQVFAHSSYLG-----TEKDDSDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFAD 235 (524)
T ss_dssp CCSSCHHHHHHTTSSEECC-----CCCCSSCTTCCCCEEEEECCSCCCBTTBCCCHHHHCCCSEEEECCCCCC------C
T ss_pred cccCchhhhhhhhhHHhhC-----CCcccccccccCcEEEEECCCCCccccccccceeeecCCEEEEcCCChHHccccCC
Confidence 222221100 000 001346799999998765421 1 13799999999999999999999
Q ss_pred HHHHHHHHHHhccccCCCeEEEEeCCChhhHHHhhc-ccccEEEeecCC----------------------Cceecc-cc
Q 015701 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG-HRFNLAWIGAFP----------------------GVKIDT-EA 194 (402)
Q Consensus 139 ~e~i~~~k~~i~~~~~~~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~-~~ 194 (402)
+|+|+++|.++++.+++++.+|+|.|||.+..+... ...++++||... ++.... ..
T Consensus 236 ~e~y~~aK~~i~~~~~~~g~~VlN~DD~~~~~~~~~~~~~~v~~fg~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~ 315 (524)
T 3hn7_A 236 LDAIQTQFHHMVRMIPSTGKIIMPAATISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLENSQAENSSDWQAELISA 315 (524)
T ss_dssp HHHHHHHHHHHHTTSCTTSEEEEESSCHHHHHHHHTCCCSCEEEEEEEC-------------------CCCSEEEEEEET
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHhccCCcEEEEecCcccccccccccccccccccCCCCcEEEEEEEC
Confidence 999999999999998889999999999999887643 345778887531 111100 01
Q ss_pred ccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEc
Q 015701 195 KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDD 274 (402)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD 274 (402)
.+..|.+...+....+..+.++++|.||++|+++|+ +++..+|++.+.|.++|++|+++|||||++. ..+++.+|||
T Consensus 316 ~g~~f~l~~~~~~~~~~~~~l~l~G~hn~~NalaA~--a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~~g~~vi~D 392 (524)
T 3hn7_A 316 DGSQFTVSFNDNKEATALVNWSMSGLHNVNNALVAI--AAAYNIGVSVKTACAALSAFAGIKRRMELIG-DVNDILVFDD 392 (524)
T ss_dssp TTTEEEEEETTEEEEEEEEECSCCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHHTCCCBTTSSEEEE-EETTEEEEEE
T ss_pred CceEEEEEECCccceeEEEEeCCCcHHHHHhHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCceEEEEE-ecCCcEEEEE
Confidence 122233332232200223579999999999999999 8999999999999999999999999999996 3678999999
Q ss_pred CCCCCHHHHHHHHcccC----CCcEEEEEcCCCCcCCCCCCcchHhhhhccccccEEEEeCCC-----hHHHHHHHHhCC
Q 015701 275 SKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYS-----GVLIWKTLVNNG 345 (402)
Q Consensus 275 ~~a~np~s~~~al~~~~----~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~~d~vi~~g~~-----~~~~~~~l~~~~ 345 (402)
+ +|||+++.++++.+. ++|+++|||++.... ......+++...+..+|.++++|.. .+.+.+.++...
T Consensus 393 ~-ahnp~~~~a~l~~l~~~~~~~r~i~V~g~~~~~~--~~g~~~~~~~~~~~~aD~vil~~~~~r~~~~~~l~~~~~~~~ 469 (524)
T 3hn7_A 393 F-AHHPTAITTTLDGAKKKLADRRLWAIIEPRSNTM--KMGIHQDSLAQSATLADHTLWYEPTGLEWGLKEVIDNATIAN 469 (524)
T ss_dssp C-CCSHHHHHHHHHHHHHHHTTSCEEEEEECCCCSS--CCSCCTTHHHHHTTTSSEEEEECCTTCCCSHHHHHHHHHHHC
T ss_pred C-CCCHHHHHHHHHHHHhhcCCCCEEEEECCCCcch--hhhhhHHHHHHHHhcCCEEEEcCCCCCCCCHHHHHHHHHhhc
Confidence 7 899999999988763 468999999863210 1111233444445568999999864 455666653210
Q ss_pred C-CccccccccHHHHHHHHHHhcCCCCEEEEcCCCcccccccCh
Q 015701 346 L-SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 388 (402)
Q Consensus 346 ~-~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~~s~~~~~~~ 388 (402)
. ...+.+++|+++|++.+.+.+++||+||++ |++||+.+..-
T Consensus 470 ~~~~~~~~~~~~~eai~~~~~~a~~gD~VLv~-GaG~~~~v~~~ 512 (524)
T 3hn7_A 470 PSIGSQQVLSSVDDIIKHICTHAKAGDAIVIM-SNGGFEGIHQR 512 (524)
T ss_dssp GGGCCEEEESCHHHHHHHHHHHCCTTCEEEEE-ESSCGGGHHHH
T ss_pred cCCCCeEEECCHHHHHHHHHHhCCCCCEEEEE-cCCCHHHHHHH
Confidence 0 124667899999999999999999999996 99999877653
No 5
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=100.00 E-value=1.1e-56 Score=450.71 Aligned_cols=363 Identities=17% Similarity=0.207 Sum_probs=282.6
Q ss_pred eeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCce--eeeccCch
Q 015701 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA--FVGGNLGN 80 (402)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~--~~~g~~g~ 80 (402)
.++|+||+++++||++++|++.++|++++++++.++. +..++|+||||||||||++||+++|++.|+++ .++|+++.
T Consensus 79 ~~vv~s~~i~~~~~~~~~a~~~~i~vl~~~~~l~~~~-~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~~~igg~~~~ 157 (475)
T 1p3d_A 79 SVVVVSSAIKDDNPELVTSKQKRIPVIQRAQMLAEIM-RFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKS 157 (475)
T ss_dssp SEEEECTTSCTTCHHHHHHHHTTCCEEEHHHHHHHHH-HTSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETT
T ss_pred CEEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHh-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEECCcccc
Confidence 5789999999999999999999999999999999887 55799999999999999999999999999863 35666553
Q ss_pred hhhhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEEEEecCCcchhcCC-CCHHHHHHHHHHhccccCCCeEE
Q 015701 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLG 159 (402)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~~~-~t~e~i~~~k~~i~~~~~~~~~~ 159 (402)
..... ...+.+++|+|+|+.+. ....++|+++|||||++||+|+| +|+|+|+++|.+++..+++++.+
T Consensus 158 ~~~~~---------~~~~~d~~VlE~~~~~~--~~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~ 226 (475)
T 1p3d_A 158 AGKNA---------HLGASRYLIAEADESDA--SFLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLA 226 (475)
T ss_dssp TTEEE---------ECCSSSEEEEECCCTTS--GGGGCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEE
T ss_pred ccccc---------ccCCCCEEEEEecCCcC--ccccccCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHhhCCCCCEE
Confidence 21111 02356889999995543 23347999999999999999999 89999999999999988889999
Q ss_pred EEeCCChhhHHHhhcccccEEEeecCCC--ceec---cccccceEEEecCC-eeeEEeeeccCcCChhhHHHHHHHHHHH
Q 015701 160 LLPFGNQHLNEAIKGHRFNLAWIGAFPG--VKID---TEAKTASFEVPAVG-VVSQLQLHNMKVMGRHNYHNAAVAALSV 233 (402)
Q Consensus 160 v~n~dd~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~-~~~~~~~~~l~l~G~~~~~Nal~A~~~a 233 (402)
|+|.|||.+..+......++++|+.+.. +... .+.....|.+...+ ... .+.++++|.||++|+++|+ +
T Consensus 227 V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~---~~~l~l~G~hn~~NalaAi--a 301 (475)
T 1p3d_A 227 VMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERI---NVLLNVPGKHNALNATAAL--A 301 (475)
T ss_dssp EEETTCHHHHHHHHHHCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTCCEE---EEEESSCSHHHHHHHHHHH--H
T ss_pred EEECCCHHHHHHHHhcCCCEEEEecCCCCcEEEEEEEEcCCceEEEEEECCCeEE---EEEEcCccHHHHHHHHHHH--H
Confidence 9999999988877655567888886432 2211 11112233332211 111 2478999999999999999 8
Q ss_pred HHHHcCCCHHHHHHHhhcCCCCCCceeEEEeec---CCeEEEEcCCCCCHHHHHHHHcccC----CCcEEEEEcCCCCcC
Q 015701 234 LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI---QGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVL 306 (402)
Q Consensus 234 ~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~---~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~~~~~ 306 (402)
+++.+|++.+.|+++|++|+++|||||++.... +++.+||| |||||++++++++.+. ++|+++|+|++....
T Consensus 302 ~~~~lgi~~~~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~vi~D-yaHnp~~~~a~l~al~~~~~~~~i~~v~g~~~~~r 380 (475)
T 1p3d_A 302 VAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD-YGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSR 380 (475)
T ss_dssp HHHHTTCCHHHHHHHHHTCCCBTTSSEEEEEEEETTEEEEEEEE-CCCSHHHHHHHHHHHHHHHCSSCEEEEECCBCHHH
T ss_pred HHHHcCCCHHHHHHHHHhCCCCCCCCEEEecccccCCCcEEEEe-CCCCHHHHHHHHHHHHhhcCCCeEEEEECCCCCcc
Confidence 999999999999999999999999999996311 37889999 6999999999887763 368899998753211
Q ss_pred CCCCCcchHhhhhccccccEEEEe-----------CCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEE
Q 015701 307 NGQESNGFEKLIEPLNHHRCVITF-----------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375 (402)
Q Consensus 307 ~~~~~~~~~~~~~~l~~~d~vi~~-----------g~~~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll 375 (402)
.+..+.++++.+..+|.++++ |...+.+.+.++..+. ..+.+++|+++|++.+.+.+++||+||+
T Consensus 381 ---~~~~~~~~~~~~~~~d~vi~t~~~~~~e~~~~g~~~~~l~~~~~~~~~-~~~~~~~~~~~ai~~a~~~a~~gd~VLv 456 (475)
T 1p3d_A 381 ---TRDLFDDFVQVLSQVDALIMLDVYAAGEAPIVGADSKSLCRSIRNLGK-VDPILVSDTSQLGDVLDQIIQDGDLILA 456 (475)
T ss_dssp ---HHHTHHHHHHHHTTSSEEEEECCBCTTCCCCTTCSHHHHHHHHHHHTS-CCCEEESCGGGHHHHHHHHCCTTCEEEE
T ss_pred ---HHHHHHHHHHHHHhCCEEEEcCCcCCCCCCCCCCCHHHHHHHHHhhCC-CceEEECCHHHHHHHHHHhCCCCCEEEE
Confidence 112356777766668888874 3455777777764321 1345678999999999999999999999
Q ss_pred cCCCcccccccCh
Q 015701 376 SPGCASFDEFRNF 388 (402)
Q Consensus 376 ~~G~~s~~~~~~~ 388 (402)
+ |+||++.+.+.
T Consensus 457 ~-G~Gs~~~v~~~ 468 (475)
T 1p3d_A 457 Q-GAGSVSKISRG 468 (475)
T ss_dssp E-CSSTHHHHHHH
T ss_pred E-CCCCHHHHHHH
Confidence 6 99999877554
No 6
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*
Probab=100.00 E-value=2.3e-57 Score=453.43 Aligned_cols=361 Identities=18% Similarity=0.180 Sum_probs=277.3
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeecc----Cc
Q 015701 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LG 79 (402)
Q Consensus 4 ~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~----~g 79 (402)
.+|+++.++ +.|.+. .++..+++..++...+.. .+.++|+||||||||||++||+++|+..|..+.+.|+ +|
T Consensus 65 ~vv~~~~~~-~~p~i~--v~~~~~al~~la~~~~~~-~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~s~g~~n~~ig 140 (454)
T 2am1_A 65 VTLSEKEVS-NHPYIL--VDDVLTAFQSLASYYLEK-TTVDVFAVTGSNGKTTTKDMLAHLLSTRYKTYKTQGNYNNEIG 140 (454)
T ss_dssp EEEESSCCC-SSCEEE--CSCHHHHHHHHHHHHHHH-HCCEEEEEECCCSSSCHHHHHHHHHTTTSCEEECCTTCCSTTH
T ss_pred EEEECCCCC-CCCEEE--ECCHHHHHHHHHHHHhhC-CCCCEEEEeCCCCcHHHHHHHHHHHHhcCCEeecCCccCcccc
Confidence 467777765 556544 355566667777665532 2679999999999999999999999999977677777 55
Q ss_pred hhhhhhhhhhccCCCCCCCccEEEEEeCc-ccccC---CCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCC
Q 015701 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSS-YQMEI---PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVN 155 (402)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~V~E~~~-~~l~~---~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~ 155 (402)
.|++...+ ..+++++|+|+|+ +.++. .+ .++|+++|||||+.||+++|+|+|+|+++|++|++.+++
T Consensus 141 ~p~t~~~~--------~~~~d~~VlE~g~~~~~~~~~~~~-~~~p~vaviTNi~~DHld~~gt~e~~a~aK~~i~~~~~~ 211 (454)
T 2am1_A 141 LPYTVLHM--------PEGTEKLVLEMGQDHLGDIHLLSE-LARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAS 211 (454)
T ss_dssp HHHHHHTC--------CTTCCEEEEECCCSSTTHHHHHHH-HHCCSEEEECCCCCSSCTTCCCHHHHHHHHGGGGTTCCT
T ss_pred hHHHHhcC--------CCCCcEEEEEcCCCCcchHHHHhC-ccCCCEEEEcCCchHhhhhcCCHHHHHHHHHHHHhhccc
Confidence 55543321 4568899999996 45552 22 379999999999999999999999999999999998888
Q ss_pred CeEEEEeCCChhhHHHhhcccccEEEeecCCCcee---ccccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHH
Q 015701 156 TKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKI---DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALS 232 (402)
Q Consensus 156 ~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~ 232 (402)
++.+|+|.|| ....++.. ..++++|+.+...++ ........|.+...+. .+.++++|.||++|+++|+
T Consensus 212 ~~~~V~n~dd-~~~~~~~~-~~~~~~~g~~~~~d~~~i~~~~~~~~~~~~~~~~-----~~~l~l~G~hn~~NalaA~-- 282 (454)
T 2am1_A 212 GSLLLAPADP-IVEDYLPI-DKKVVRFGQGAELEITDLVERKDSLTFKANFLEQ-----ALDLPVTGKYNATNAMIAS-- 282 (454)
T ss_dssp TCEEEEESCG-GGGGGCCS-SSEEEEESTTSSBCEEEEEECSSCEEEEETTCSS-----EEEESSCCHHHHHHHHHHH--
T ss_pred CCEEEEEcHH-HHHHHHhc-CCcEEEEeCCCCCceeeeEEeCCceEEEEEecCc-----EEEecCCCHHHHHHHHHHH--
Confidence 8999999999 77666554 567888886432221 0011111222221111 2468999999999999999
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccC---C---CcEEEEEcCCCCcC
Q 015701 233 VLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---G---HKCVILLGGQAKVL 306 (402)
Q Consensus 233 a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~---~~~i~V~g~~~~~~ 306 (402)
++++.+|++.+.|.++|++|+++|||||++. ..+++.+|||+|||||+|++++++.+. . +|+++|||+|.+.|
T Consensus 283 a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~~~~~iiDDsyahnp~s~~~~l~~l~~~~~~~~~~~i~V~G~~~e~G 361 (454)
T 2am1_A 283 YVALQEGVSEEQIRLAFQHLELTRNRTEWKK-AANGADILSDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELG 361 (454)
T ss_dssp HHHHHTTCCHHHHHHHGGGCCCCCCCSCEEC-CTTTCEEEEECSCCSHHHHHHHHHHHTTSCCCSSCEEEEEEECCCCCC
T ss_pred HHHHHcCCCHHHHHHHHHhCCCccCCeeEEE-CCCCeEEEEeCCCCCHHHHHHHHHHHHhcccccCCCEEEEECCchhcC
Confidence 8999999999999999999999999999995 346788999999999999999998874 2 68999999998888
Q ss_pred CCCCCcchHhhhhcccc--ccEEEEeCCChHHHHHHHHhC---CCCcccc---ccccHHHHHHHHHHhcCCCCEEEEcCC
Q 015701 307 NGQESNGFEKLIEPLNH--HRCVITFGYSGVLIWKTLVNN---GLSIPCF---AVANMKDAVNHARRMATNGDAIVLSPG 378 (402)
Q Consensus 307 ~~~~~~~~~~~~~~l~~--~d~vi~~g~~~~~~~~~l~~~---~~~~~~~---~~~~~~~ai~~~~~~~~~~d~vll~~G 378 (402)
.++. ..+.++++.+.. +|.++++|++.+.+.+.+... +....+. .++|+++|++.+.+.+++||+||++ |
T Consensus 362 ~~~~-~~~~~~~~~~~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~a~~gd~VLv~-G 439 (454)
T 2am1_A 362 DQSV-QLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLK-G 439 (454)
T ss_dssp TTHH-HHHHHGGGGCCTTTCSEEEEEESTTHHHHHHHHHHSCTTCEEEEEBSSSCBTHHHHHHHHHHHCCTTEEEEEE-S
T ss_pred cHHH-HHHHHHHHHHHhcCCCEEEEECcCHHHHHHHHhhccccCcceeeecccCCCCHHHHHHHHHHhCCCCCEEEEE-e
Confidence 7653 356788887753 899999999888777755432 1100111 4579999999999999999999997 7
Q ss_pred CcccccccChhHHhHHHHHHHh
Q 015701 379 CASFDEFRNFEHRGMVFQELAF 400 (402)
Q Consensus 379 ~~s~~~~~~~~~r~~~~~~~~~ 400 (402)
+|++.||++++
T Consensus 440 -----------S~~~~~e~~~~ 450 (454)
T 2am1_A 440 -----------SNSMNLAKLVE 450 (454)
T ss_dssp -----------SCCHHHHHHHH
T ss_pred -----------CCcCCHHHHHH
Confidence 48888888875
No 7
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=7.7e-57 Score=448.99 Aligned_cols=360 Identities=19% Similarity=0.253 Sum_probs=267.7
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeecc----Cc
Q 015701 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LG 79 (402)
Q Consensus 4 ~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~----~g 79 (402)
.+|.++.++++.|.+. +++..+++.+++...+.. .+.++|+||||||||||++||+++|+..|...++.|+ +|
T Consensus 64 ~vv~~~~~~~~~p~i~--v~~~~~~l~~la~~~~~~-~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~t~g~~n~~ig 140 (452)
T 1gg4_A 64 ALLVSRPLDIDLPQLI--VKDTRLAFGELAAWVRQQ-VPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIG 140 (452)
T ss_dssp EEEESSCCSCSSCEEE--ESCHHHHHHHHHHHHHHH-SCCEEEEEECSSCHHHHHHHHHHHHTTTSCEEECCTTCCSTTH
T ss_pred EEEECCCcCCCCCEEE--ECCHHHHHHHHHHHHhcC-CCCCEEEEeCCCCcHHHHHHHHHHHHhcCCEeeccccccCCcc
Confidence 4677777655555443 355556666776665543 3689999999999999999999999999976677777 55
Q ss_pred hhhhhhhhhhccCCCCCCCccEEEEEeC-cccccCC--CccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCC
Q 015701 80 NPLSEAAFHCIALPSSKPKFQVAVVEVS-SYQMEIP--NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNT 156 (402)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~V~E~~-~~~l~~~--~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~ 156 (402)
.|++... ...+++++|+|+| ++.++.. ...++|+++|||||+.||+++|+|+|+|+++|.+|++.++++
T Consensus 141 ~p~t~~~--------~~~~~d~~VlE~g~~~~~~~~~~~~~~~p~vaviTNI~~DHld~~gt~e~~~~aK~~i~~~~~~~ 212 (452)
T 1gg4_A 141 VPMTLLR--------LTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPEN 212 (452)
T ss_dssp HHHHHTT--------CCTTCSEEEEECCCSSSSHHHHHHHHHCCSEEEECCCC--------CHHHHHHHHHGGGGGCCTT
T ss_pred hhHHHHc--------CCCCCcEEEEEeCCCCcchHHHHhCccCCCEEEECCCChHHhhhcCCHHHHHHHHHHHHhhcccC
Confidence 5544322 1456889999999 4555522 113799999999999999999999999999999999988888
Q ss_pred eEEEEeCCChhhHHHh--hcccccEEEeecCC---Cceec---cccccceEEEecCCeeeEEeeeccCcCChhhHHHHHH
Q 015701 157 KLGLLPFGNQHLNEAI--KGHRFNLAWIGAFP---GVKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAV 228 (402)
Q Consensus 157 ~~~v~n~dd~~~~~~~--~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~ 228 (402)
+.+|+|.|||....+. .. ..++++|+.+. ++... ....+..|.+...+... .+.++++|.||++|+++
T Consensus 213 ~~~V~n~dd~~~~~~~~~~~-~~~~~~~g~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~~---~~~l~l~G~hn~~Nala 288 (452)
T 1gg4_A 213 GIAIMNADNNDWLNWQSVIG-SRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSV---DVLLPLPGRHNIANALA 288 (452)
T ss_dssp CEEEEETTBCCHHHHHHHHT-TSEEEEECSSCTTCSBEEEEEEECSSSEEEEEEETTEEE---EEEECSSSTHHHHHHHH
T ss_pred CEEEEeCCcHHHHHHHHhhc-CCCEEEEeCCCCCCcEEEEEEEEcCCceEEEEEECCCEE---EEEeCCCcHHHHHHHHH
Confidence 9999999999887763 22 45788888643 22211 01112223332222122 24789999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccC--CCcEEEEEcCCCCcC
Q 015701 229 AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAKVL 306 (402)
Q Consensus 229 A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~--~~~~i~V~g~~~~~~ 306 (402)
|+ +++..+|++.+.|.++|++|+++|||||++. ..+++.+|||+|||||+|++++++.+. .+|+++|+|+|.+.|
T Consensus 289 A~--a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~~~~~vidDsyahnp~s~~~~l~~l~~~~~~~i~V~G~~~e~g 365 (452)
T 1gg4_A 289 AA--ALSMSVGATLDAIKAGLANLKAVPGRLFPIQ-LAENQLLLDDSYNANVGSMTAAVQVLAEMPGYRVLVVGDMAELG 365 (452)
T ss_dssp HH--HHHHHTTCCHHHHHHHHTTCCCCTTSSEEEE-EETTEEEEECCSCCCHHHHHHHHHHHHHSSSEEEEEECCCCCCT
T ss_pred HH--HHHHHcCCCHHHHHHHHHhCCCCCCCceEEE-CCCCcEEEEeCCCCCHHHHHHHHHHHHhccCCEEEEECCccccC
Confidence 99 8999999999999999999999999999996 356799999999999999999998874 268899999998877
Q ss_pred CCCCCcchHhhhhccc--cccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCC--CCEEEEcCCCccc
Q 015701 307 NGQESNGFEKLIEPLN--HHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN--GDAIVLSPGCASF 382 (402)
Q Consensus 307 ~~~~~~~~~~~~~~l~--~~d~vi~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~--~d~vll~~G~~s~ 382 (402)
.++. ..+.++++.+. .+|.++++|+..+.+.+.++. ..+++|+++|++.+.+.+++ ||+||++ ||
T Consensus 366 ~~~~-~~~~~~~~~~~~~~~d~vi~~g~~~~~i~~~~~~------~~~~~~~~~ai~~a~~~~~~~~gd~VLv~-GS--- 434 (452)
T 1gg4_A 366 AESE-ACHVQVGEAAKAAGIDRVLSVGKQSHAISTASGV------GEHFADKTALITRLKLLIAEQQVITILVK-GS--- 434 (452)
T ss_dssp THHH-HHHHHHHHHHHHHTCSEEEEESSSTHHHHHHTTS------CEEESSHHHHHHHHHHHHHHCSSEEEEEE-CC---
T ss_pred ChhH-HHHHHHHHHHHHcCCCEEEEECcCHHHHHHHhhc------CceeCCHHHHHHHHHHhhcccCCcEEEEE-cC---
Confidence 7653 34667777665 389999999988877765531 13568999999999999999 9999997 75
Q ss_pred ccccChhHHhHHHHHHHh
Q 015701 383 DEFRNFEHRGMVFQELAF 400 (402)
Q Consensus 383 ~~~~~~~~r~~~~~~~~~ 400 (402)
|++.+|+++.
T Consensus 435 --------~~~~~e~i~~ 444 (452)
T 1gg4_A 435 --------RSAAMEEVVR 444 (452)
T ss_dssp --------GGGTTHHHHH
T ss_pred --------CcCCHHHHHH
Confidence 6666666654
No 8
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=100.00 E-value=7.1e-56 Score=446.47 Aligned_cols=363 Identities=16% Similarity=0.208 Sum_probs=277.6
Q ss_pred eeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCce--eeeccCch
Q 015701 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA--FVGGNLGN 80 (402)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~--~~~g~~g~ 80 (402)
.++|+||+++++||++++|++.++|++++++++.++. +..++|+||||||||||++||+++|+++|+++ .++|+++.
T Consensus 80 ~~vv~s~~i~~~~p~~~~a~~~~ipvl~~~~~l~~~~-~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~~~igg~~~~ 158 (491)
T 2f00_A 80 SVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELM-RFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKA 158 (491)
T ss_dssp SEEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHH-TTSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETT
T ss_pred CEEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEECCeecc
Confidence 5789999999999999999999999999999999887 56799999999999999999999999999863 35666553
Q ss_pred hhhhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEEEEecCCcchhcCC-CCHHHHHHHHHHhccccCCCeEE
Q 015701 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLG 159 (402)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~~~-~t~e~i~~~k~~i~~~~~~~~~~ 159 (402)
...... ..+.+++|+|+|+.+. ....++|+++|||||++||+++| +|+|+|+++|.+++..+++++.+
T Consensus 159 ~~~~~~---------~~~~d~~VlE~~~~~~--~~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~ 227 (491)
T 2f00_A 159 AGVHAR---------LGHGRYLIAEADESDA--SFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRA 227 (491)
T ss_dssp TTEEEE---------CCSSSEEEEECCCTTS--GGGGCCCSEEEECCCCSCSGGGTTTCHHHHHHHHHHHHTTSCTTCEE
T ss_pred cccccc---------CCCCCEEEEEeCCCcc--chhcCCCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHHhCCCCCEE
Confidence 221110 2356889999995443 23347999999999999999999 89999999999999988888999
Q ss_pred EEeCCChhhHHHhhcccccEEEeecCCC--ceec---cccccceEEEecCC-eeeEEeeeccCcCChhhHHHHHHHHHHH
Q 015701 160 LLPFGNQHLNEAIKGHRFNLAWIGAFPG--VKID---TEAKTASFEVPAVG-VVSQLQLHNMKVMGRHNYHNAAVAALSV 233 (402)
Q Consensus 160 v~n~dd~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~-~~~~~~~~~l~l~G~~~~~Nal~A~~~a 233 (402)
|+|.|||.+..+......++++|+.... +... .+.....|.+...+ ... .+.++++|.||++|+++|+ +
T Consensus 228 V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hn~~NalaAi--a 302 (491)
T 2f00_A 228 VMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPM---RVTLNAPGRHNALNAAAAV--A 302 (491)
T ss_dssp EEETTSHHHHHHGGGCCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCE---EEEESSCSHHHHHHHHHHH--H
T ss_pred EEECCCHHHHHHHHhcCCcEEEEeCCCCCCEEEEEEEEcCCceEEEEEECCceEE---EEEEccchHHHHHHHHHHH--H
Confidence 9999999988887666667889986432 2211 11112233332211 111 2468999999999999999 8
Q ss_pred HHHHcCCCHHHHHHHhhcCCCCCCceeEEEeec-------CC-eEEEEcCCCCCHHHHHHHHcccC----CCcEEEEEcC
Q 015701 234 LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI-------QG-VTWVDDSKATNLEATCTGLMDLK----GHKCVILLGG 301 (402)
Q Consensus 234 ~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~-------~~-~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~ 301 (402)
+++.+|++.+.|.++|++|+++|||||++.... ++ +.+||| |||||+++.++++.+. ++|+++|+|+
T Consensus 303 ~a~~lgi~~~~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~~g~~~vi~D-yaHnp~~~~a~l~al~~~~~~~~i~~v~g~ 381 (491)
T 2f00_A 303 VATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDD-YGHHPTEVDATIKAARAGWPDKNLVMLFQP 381 (491)
T ss_dssp HHHHHTCCHHHHHHHHHTCCCBTTSSEEEEEEESSSSSSCSSEEEEEEE-CCCSHHHHHHHHHHHHTTCCSSEEEEEECC
T ss_pred HHHHcCCCHHHHHHHHHhCCCCCCCCEEEccccccccccCCCcEEEEEe-CCCCHHHHHHHHHHHHhhcCCCeEEEEECC
Confidence 999999999999999999999999999996311 37 899999 6999999999887763 3678999987
Q ss_pred CCCcCCCCCCcchHhhhhccccccEEEEe-----------CCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCC
Q 015701 302 QAKVLNGQESNGFEKLIEPLNHHRCVITF-----------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 370 (402)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~l~~~d~vi~~-----------g~~~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~ 370 (402)
+..... +..+.++++.+..+|.++++ |...+.+.+.++..+. ..+.+++|+++|++.+.+.+++|
T Consensus 382 ~~~~r~---k~~~~~~~~~~~~~d~vilt~~~~~~e~~~~g~~~~~l~~~~~~~~~-~~~~~~~~~~~ai~~a~~~a~~g 457 (491)
T 2f00_A 382 HRFTRT---RDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRGRGK-IDPILVPDPARVAEMLAPVLTGN 457 (491)
T ss_dssp BCHHHH---TTTHHHHHHHHTTSSEEEECCCBCSSSCCCTTSSHHHHTTC--------CCEECCCSSCCHHHHGGGCCSE
T ss_pred CCCcch---HHHHHHHHHHHHhCCEEEEcCCcCCCCCCCCCCCHHHHHHHHHhhCC-CceEEeCCHHHHHHHHHHhCCCC
Confidence 532111 12466777766668888874 3344555554433221 12455689999999999999999
Q ss_pred CEEEEcCCCcccccccCh
Q 015701 371 DAIVLSPGCASFDEFRNF 388 (402)
Q Consensus 371 d~vll~~G~~s~~~~~~~ 388 (402)
|+||++ |++|++.+.+.
T Consensus 458 d~VLv~-gaGsl~~v~~~ 474 (491)
T 2f00_A 458 DLILVQ-GAGNIGKIARS 474 (491)
T ss_dssp EEEEEE-CSTTHHHHHHH
T ss_pred CEEEEE-CCCCHHHHHHH
Confidence 999996 88898776544
No 9
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=2.4e-54 Score=432.46 Aligned_cols=349 Identities=18% Similarity=0.195 Sum_probs=263.2
Q ss_pred ceeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCC--CCcEEEEecCCChhhHHHHHHHHHHhcCCce--eeecc
Q 015701 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPR--SIKILAVTGTNGKSTVVTFVGQMLNHLGIEA--FVGGN 77 (402)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~--~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~--~~~g~ 77 (402)
.+++|+||+++++||++.+|+++++|++++++++.++. + +.++|+||||||||||++||+++|++.|+++ +++|+
T Consensus 72 ~d~vV~spgi~~~~p~~~~a~~~gi~v~~~~e~l~~~~-~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~~~~~~~g~ 150 (469)
T 1j6u_A 72 PDLVIKTPAVRDDNPEIVRARMERVPIENRLHYFRDTL-KREKKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGI 150 (469)
T ss_dssp CSEEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHH-HHHCCCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred CCEEEECCCcCCCCHHHHHHHHcCCcEEEHHHHHHHHH-hccCCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCe
Confidence 36899999999999999999999999999999999887 4 5799999999999999999999999999884 57777
Q ss_pred Cchhh-hhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEEEEecCCcchhcCCCC-HHHHHHHHHHhccccCC
Q 015701 78 LGNPL-SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSHMVN 155 (402)
Q Consensus 78 ~g~~~-~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~~~~t-~e~i~~~k~~i~~~~~~ 155 (402)
+...- ....+ .+.+ +|+|+|+++. ....++|+++|||||++||+|+|++ +|+|+++|.++++.++
T Consensus 151 ~~~~g~~~~~~---------~~~~-~V~E~~~~~~--~~~~~~p~vaviTNI~~DHld~~g~t~e~ia~ak~~~~~~~~- 217 (469)
T 1j6u_A 151 MDSLEHGNYEK---------GNGP-VVYELDESEE--FFSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTD- 217 (469)
T ss_dssp CTTSTTSSEEC---------CSSC-EEEEECTTSG--GGGGCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTCS-
T ss_pred ecccCcccccc---------CCCC-EEEECCCccC--ccccccCCEEEEcCCCcchhhhhcCHHHHHHHHHHHHHhhCC-
Confidence 55422 21111 1345 9999998753 3334799999999999999999998 9999999999988653
Q ss_pred CeEEEEeCCChhhHHHhhcccccEEEeecCC-Ccee--cccccc-ceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHH
Q 015701 156 TKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP-GVKI--DTEAKT-ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231 (402)
Q Consensus 156 ~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~ 231 (402)
.+|+|.|||.+..+ ++++|+.+. ++.. ...... ..|.+...+.. +..+.++++|.||++|+++|+
T Consensus 218 --~~V~n~dd~~~~~~------~~~~~g~~~~d~~~~~~~~~~~~~~f~~~~~~~~--~~~~~l~l~G~hn~~NalaAi- 286 (469)
T 1j6u_A 218 --LVVTFAEDELTSHL------GDVTFGVKKGTYTLEMRSASRAEQKAMVEKNGKR--YLELKLKVPGFHNVLNALAVI- 286 (469)
T ss_dssp --EEEEETTCTTTGGG------CSEEECSSSSSEEEEEEEECSSCEEEEEEETTEE--EEEEEESSCSHHHHHHHHHHH-
T ss_pred --EEEEECCChhhccc------eEEEEECCCceEEEEEEECCCCCEEEEEEECCeE--EEEEEecCcCHHHHHHHHHHH-
Confidence 89999999976432 567777532 1211 001111 22333222221 123478999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHhhcCCCCCCceeEE--EeecCCeEEEEcCCCCCHHHHHHHHcccC----CCcEEEEEcCCC-C
Q 015701 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIV--HRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQA-K 304 (402)
Q Consensus 232 ~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~--~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~~-~ 304 (402)
++++.+|++.+.|+++|++|+++|||||++ . ..+++.+||| |||||.++.++++++. ++|+++|+|+.. .
T Consensus 287 -a~a~~lgi~~~~i~~~L~~f~g~~gR~e~v~~~-~~~g~~vi~D-~aHnp~~~~a~l~al~~~~~~~~i~~I~g~g~~~ 363 (469)
T 1j6u_A 287 -ALFDSLGYDLAPVLEALEEFRGVHRRFSIAFHD-PETNIYVIDD-YAHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYS 363 (469)
T ss_dssp -HHHHHTTCCHHHHHHHHHHCCCCTTSSEEEEEE-TTTTEEEEEE-CCCSHHHHHHHHHHHHHHCSSSEEEEEECCBC--
T ss_pred -HHHHHcCCCHHHHHHHHHhCCCCCCCcEEEccc-ccCCcEEEEe-CCCCHHHHHHHHHHHHHhcCCCcEEEEEcCCCCC
Confidence 899999999999999999999999999999 5 3578899999 5999999999877763 467899998532 1
Q ss_pred cCCCCCCcchHhhhhccccccEEEEe-----------CCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEE
Q 015701 305 VLNGQESNGFEKLIEPLNHHRCVITF-----------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373 (402)
Q Consensus 305 ~~~~~~~~~~~~~~~~l~~~d~vi~~-----------g~~~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~v 373 (402)
++ +..+.++++.+..+|.++++ |...+.+.+.++..+. .+.+++|++++++.+ .+++||+|
T Consensus 364 r~----~~~~~~l~~~~~~~d~vil~~~~~~~e~p~~g~~~~~l~~~~~~~~~--~~~~~~~~~~a~~~~--~a~~gD~V 435 (469)
T 1j6u_A 364 RL----EREDGNFAKALQLADEVVVTEVYDAFEEKKNGISGKMIWDSLKSLGK--EAYFVEKLPELEKVI--SVSENTVF 435 (469)
T ss_dssp ----------CHHHHHHTTSSEEEECCCBC---------CHHHHHHHHHHTTC--CEEECCSGGGHHHHC--CCCSSEEE
T ss_pred cc----HHHHHHHHHHHhcCCEEEEcccCCCCCCcccCcCHHHHHHHHHhcCC--cEEEECCHHHHHHHh--hCCCCCEE
Confidence 21 12345566655557888886 4445667777765432 345668899998876 78899999
Q ss_pred EEcCCCcccccccC
Q 015701 374 VLSPGCASFDEFRN 387 (402)
Q Consensus 374 ll~~G~~s~~~~~~ 387 (402)
|++ |++|++.+.+
T Consensus 436 Lv~-g~Gs~~~~~~ 448 (469)
T 1j6u_A 436 LFV-GAGDIIYSSR 448 (469)
T ss_dssp EEE-CSSTHHHHHH
T ss_pred EEE-CCCchhHHHH
Confidence 996 8888887644
No 10
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=2.6e-51 Score=413.89 Aligned_cols=332 Identities=20% Similarity=0.169 Sum_probs=245.5
Q ss_pred CCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeeccCchhhhhhhhhh-ccCCC-----------CCCCccEEEEEeCc
Q 015701 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-IALPS-----------SKPKFQVAVVEVSS 108 (402)
Q Consensus 41 ~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~g~~~~~~~~~~-~~~~~-----------~~~~~~~~V~E~~~ 108 (402)
.+.++|+||||||||||++||+++|+..|+++++.|+.+.+++...+.. .+++. ...+++++|+|+|+
T Consensus 106 ~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gs~~~~i~~~~~~~~~t~~~~~~l~~~l~~~~~~~~d~~VlEvgs 185 (498)
T 1e8c_A 106 DNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSS 185 (498)
T ss_dssp GSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEEEETTCCBCCSSSSCCHHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred ccCeEEEEeCCcChHHHHHHHHHHHHhCCCCEEEECCCCcccCCeeeecCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 3678999999999999999999999999999887787766554322210 01110 13567899999997
Q ss_pred cccc--CCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEEeCCChhhHHHhhcccc---cEEEee
Q 015701 109 YQME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRF---NLAWIG 183 (402)
Q Consensus 109 ~~l~--~~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~---~~~~~~ 183 (402)
++++ .+.. ++|+++|||||+.||+++|+|+|+|+++|++|++. ++++.+|+|.|||....+...... ++++||
T Consensus 186 ~~l~~~rl~~-~~p~vaViTNI~~DHld~~gt~e~ia~aK~~i~~~-~~~~~~V~n~dd~~~~~~~~~~~~~~~~v~~~g 263 (498)
T 1e8c_A 186 HGLVQHRVAA-LKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDH 263 (498)
T ss_dssp HHHHTTTTTT-CBCSEEEECCCCSCCHHHHSSHHHHHHHHHHHHHT-SBCCEEEEETTSHHHHHHHTTCTTCEEEESSSC
T ss_pred chhhcccccc-cCCCEEEEeCCChhhhhccCCHHHHHHHHHHHhcc-CCCCeEEEECCCHHHHHHHHhhhccCCcEEEEe
Confidence 6654 2332 68999999999999999999999999999999987 567899999999998887654433 666776
Q ss_pred cCCC-----ceec---cccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCC
Q 015701 184 AFPG-----VKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255 (402)
Q Consensus 184 ~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~ 255 (402)
.... +... ....+..|.+...+... .+.++++|.||++|+++|+ ++++.+|++.+.|.++|++|+++
T Consensus 264 ~~~~~~~~d~~~~~~~~~~~g~~f~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~~~~lGi~~~~i~~~L~~~~~~ 338 (498)
T 1e8c_A 264 INPNCHGRWLKATEVNYHDSGATIRFSSSWGDG---EIESHLMGAFNVSNLLLAL--ATLLALGYPLADLLKTAARLQPV 338 (498)
T ss_dssp CCTTTCSEEEEEEEEEECSSCEEEEEEETTCCE---EEEECSCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHGGGCCCC
T ss_pred cCCCCCcCCEEEEEEEEcCCceEEEEEECCceE---EEEecCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCC
Confidence 5321 2111 01111223322211111 2468999999999999999 89999999999999999999999
Q ss_pred CCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccC---CCcEEEEEcCCCCcCCCCCCcchHh-hhhccc-cccEEEEe
Q 015701 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEK-LIEPLN-HHRCVITF 330 (402)
Q Consensus 256 ~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~g~~~~~~~~~~~~~~~~-~~~~l~-~~d~vi~~ 330 (402)
|||||++. ..+++.+|+| |||||+|++++++.+. .+|+++|||+..++.. .+++ +.+... .+|.++++
T Consensus 339 ~gR~e~v~-~~~~~~vi~D-yahnP~s~~a~l~~l~~~~~~r~i~V~G~g~dr~~-----~~~~~~~~~~~~~~d~vi~~ 411 (498)
T 1e8c_A 339 CGRMEVFT-APGKPTVVVD-YAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDK-----GKRPLMGAIAEEFADVAVVT 411 (498)
T ss_dssp TTSSEEEC-CTTSCEEEEE-CCCSHHHHHHHHHHHHHTCSSCEEEEECCCSSSCS-----THHHHHHHHHHHHCSEEEEC
T ss_pred CCceEEEE-cCCCCEEEEE-CCCCHHHHHHHHHHHHhhCCCCEEEEECCCCCcch-----hHHHHHHHHHHhCCCEEEEc
Confidence 99999995 2457788999 6999999999988874 4689999998766532 1232 333222 27888887
Q ss_pred CCC-----hHHHHHHHHhCCCCc--cccccccHHHHHHHHHHhcCCCCEEEEc-CCCcccccccC
Q 015701 331 GYS-----GVLIWKTLVNNGLSI--PCFAVANMKDAVNHARRMATNGDAIVLS-PGCASFDEFRN 387 (402)
Q Consensus 331 g~~-----~~~~~~~l~~~~~~~--~~~~~~~~~~ai~~~~~~~~~~d~vll~-~G~~s~~~~~~ 387 (402)
+.+ ++.+.+.+.. +... .+.+++|+++|++.+.+.+++||+||++ +|+.+++.+.+
T Consensus 412 ~~~~r~e~~~~i~~~~~~-~~~~~~~~~~~~~~~~ai~~a~~~a~~gd~VLv~GkG~~~~q~~~~ 475 (498)
T 1e8c_A 412 DDNPRTEEPRAIINDILA-GMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGN 475 (498)
T ss_dssp CSCCBTSCHHHHHHHHHT-TSSCGGGSEECSCHHHHHHHHHHHSCTTCEEEEESCTTCCEEEETT
T ss_pred CCCCCCCCHHHHHHHHHh-hccccCceEEECCHHHHHHHHHHhCCCCCEEEEecCCCcceEEECC
Confidence 644 3666666653 2211 2456789999999999999999999996 67777777755
No 11
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=100.00 E-value=6.1e-51 Score=413.93 Aligned_cols=333 Identities=20% Similarity=0.227 Sum_probs=242.9
Q ss_pred CCcEEEEecCCChhhHHHHHHHHHHhcCCceeeeccCchhhhhhhhhhc-cCC-----------CCCCCccEEEEEeCcc
Q 015701 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCI-ALP-----------SSKPKFQVAVVEVSSY 109 (402)
Q Consensus 42 ~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~g~~~~~~~~~~~-~~~-----------~~~~~~~~~V~E~~~~ 109 (402)
++++|+||||||||||++||+++|+..|.++++.|+.+..+....+... +++ ....+++++|+|+|++
T Consensus 145 ~~~vI~VTGTnGKTTT~~ml~~iL~~~G~~~g~~gs~~~~i~~~~~~~~~tt~e~~~l~~~l~~~~~~~~d~~VlEvgs~ 224 (535)
T 2wtz_A 145 RLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSH 224 (535)
T ss_dssp SSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESSSCEEETTEEECCSSSSCCHHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred cceEEEeeCCCChHHHHHHHHHHHHHCCCCEEEECCcceeECCEecccCCccCcHHHHHHHHHHHHhCCCCEEEEECCCc
Confidence 6789999999999999999999999999999888877665543221110 000 0135688999999976
Q ss_pred ccc--CCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccC--CCeEEEEeCCChhhHHHhhcccccEEEeecC
Q 015701 110 QME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV--NTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF 185 (402)
Q Consensus 110 ~l~--~~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~--~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~ 185 (402)
.++ .+.. ++|+++|||||+.||+++|+|+|+|+++|++|++.++ +++.+|+|.|||....+..... ++++|+..
T Consensus 225 ~l~~~rl~~-~~p~vaViTNI~~DHld~~gs~e~ia~aK~~i~~~~~~~~~g~~Vln~Dd~~~~~~~~~~~-~v~~~g~~ 302 (535)
T 2wtz_A 225 ALALGRVDG-TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAA-DAITVSAA 302 (535)
T ss_dssp HHHTTTTTT-CCEEEEEECCCCSCCTTTSSSHHHHHHHHHTTTCTTSTTCCSEEEEECSSHHHHHHHHHHS-SCEEEESS
T ss_pred ccccccccc-CCcCEEEEcCCChHHhhhcCCHHHHHHHHHHHhccccccCCCeEEEECCCHHHHHHHHhcC-CEEEEecC
Confidence 553 2322 6899999999999999999999999999999999765 6789999999998877765433 67888864
Q ss_pred CC---ceec---cc-cccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCc
Q 015701 186 PG---VKID---TE-AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258 (402)
Q Consensus 186 ~~---~~~~---~~-~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR 258 (402)
.. +... .+ ..+..|.+...+... ..+.++++|.||++|+++|+ ++++.+|++.+.|.++|++|+ +|||
T Consensus 303 ~~~~d~~~~~i~~~~~~g~~f~~~~~~~~~--~~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~L~~~~-~~gR 377 (535)
T 2wtz_A 303 DRPAHWRATDVAPTDAGGQQFTAIDPAGVG--HHIGIRLPGRYNVANCLVAL--AILDTVGVSPEQAVPGLREIR-VPGR 377 (535)
T ss_dssp SSCCSEEEEEEEEETTTEEEEEEECTTSCE--EEEEESCCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHTTCC-CTTS
T ss_pred CCcCcEEEEEEEEcCCCCeEEEEEeCCceE--EEEEeCCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCC-CCCc
Confidence 32 2111 11 112234333221110 12478999999999999999 899999999999999999999 9999
Q ss_pred eeEEEeecCCeEEEEcCCCCCHHHHHHHHcccC--CCcEEEEEcCCCCcCCCCCCcchHhhhhccc-cccEEEEeCCCh-
Q 015701 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAKVLNGQESNGFEKLIEPLN-HHRCVITFGYSG- 334 (402)
Q Consensus 259 ~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~--~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~-~~d~vi~~g~~~- 334 (402)
||++. ..+++.+|+| |||||+|++++++.+. .+|+++|||++.+++.. .+..+++... .+|.+++++.++
T Consensus 378 ~e~v~-~~~~~~viiD-yahNP~s~~aal~~l~~~~~r~i~V~G~~gdr~~~----~~~~~~~~a~~~~d~vi~~~~~~r 451 (535)
T 2wtz_A 378 LEQID-RGQGFLALVD-YAHKPEALRSVLTTLAHPDRRLAVVFGAGGDRDPG----KRAPMGRIAAQLADLVVVTDDNPR 451 (535)
T ss_dssp SEECC-SSCSSEEEEE-CCCSHHHHHHHHHTTCCSSSCEEEEECCCTTSCGG----GHHHHHHHHHHHCSEEEECCSCCT
T ss_pred eEEEE-cCCCcEEEEE-CCCCHHHHHHHHHHhhCCCCcEEEEECCCCccchh----hHHHHHHHHHhcCCEEEEcCCCCC
Confidence 99995 2457767777 7999999999999885 46899999998665421 1222333222 378888886543
Q ss_pred ----HHHHHHHHhCCCC----ccccccccHHHHHHHHHHhcCCCCEEEEc-CCCcccccccC
Q 015701 335 ----VLIWKTLVNNGLS----IPCFAVANMKDAVNHARRMATNGDAIVLS-PGCASFDEFRN 387 (402)
Q Consensus 335 ----~~~~~~l~~~~~~----~~~~~~~~~~~ai~~~~~~~~~~d~vll~-~G~~s~~~~~~ 387 (402)
..+.+.+...... ..+.+++|+++|++.+.+.+++||+||++ +|+...+.+++
T Consensus 452 ~e~~~~i~~~i~~g~~~~~~~~~~~~~~d~~~Ai~~a~~~a~~gD~VLv~GsGhe~~q~~~~ 513 (535)
T 2wtz_A 452 DEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQRGGG 513 (535)
T ss_dssp TSCHHHHHHHHHHHHTTCC-CCEEEECCSHHHHHHHHHHHCCTTCEEEEESCTTCCCEECC-
T ss_pred CCCHHHHHHHHHhhhhhcCCCCcEEEECCHHHHHHHHHHhCCCCCEEEEEeCCCcceEEECC
Confidence 5555544321000 13456789999999999999999999997 45555555544
No 12
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=100.00 E-value=6.1e-48 Score=382.53 Aligned_cols=332 Identities=14% Similarity=0.109 Sum_probs=231.6
Q ss_pred eeeHHHHHHhhC---CCCCcEEEEecCCChhhHHHHHHHHHHhcCCceee--eccC----------chhhhhhhh-----
Q 015701 28 VMSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV--GGNL----------GNPLSEAAF----- 87 (402)
Q Consensus 28 ~l~~~~~~~~~~---~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~--~g~~----------g~~~~~~~~----- 87 (402)
.+.++..+.+.+ +++.++|+||||||||||++||+++|+..|++++. ++++ |.+++...+
T Consensus 21 ~l~~~~~~l~~lg~p~~~~~vI~VtGTnGKtTT~~~l~~iL~~~G~~vg~~~sp~l~~~~eri~i~g~~i~~~~~~~~~~ 100 (428)
T 1jbw_A 21 DHRRILTLLHALGNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALVNAVA 100 (428)
T ss_dssp SCHHHHHHHHHTTCGGGSSCEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCchhcCcEEEEECCCChHHHHHHHHHHHHHCCCCEEEEeCCccCccceEEEECCEECCHHHHHHHHH
Confidence 344554444333 24678999999999999999999999999999863 3332 222221100
Q ss_pred ---------h-----h-ccCC----------CCCCCccEEEEEeCc-ccccCCCccccccEEEEecCCcchhcCCC-CHH
Q 015701 88 ---------H-----C-IALP----------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMK 140 (402)
Q Consensus 88 ---------~-----~-~~~~----------~~~~~~~~~V~E~~~-~~l~~~~~~~~p~i~iiTni~~dH~~~~~-t~e 140 (402)
. . .++. ....++|++|+|+|. +++|.++. ++|+++|||||+.||+++|+ |+|
T Consensus 101 ~~~~~~~~ig~~~~~~~~t~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~d~t~~-~~p~vaviTnI~~DHld~~g~t~e 179 (428)
T 1jbw_A 101 FVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNV-ITPVVSVLTEVALDHQKLLGHTIT 179 (428)
T ss_dssp HHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTCS-CCCSEEEECCCCSCCHHHHCSSHH
T ss_pred HHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHhCCCCEEEEecCCCcccccccc-CCCCEEEECcCcHhhhhhhCCCHH
Confidence 0 0 0000 013468899999995 58888776 79999999999999999998 999
Q ss_pred HHHHHHHHhccccCCCeEEEEeCCChhhHHHhhc----ccccEEEeecCCCceecc---ccccceEEEecCCeeeEEeee
Q 015701 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDT---EAKTASFEVPAVGVVSQLQLH 213 (402)
Q Consensus 141 ~i~~~k~~i~~~~~~~~~~v~n~dd~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 213 (402)
+|+++|+++++ +++.+|+|.|||.+..+... ...++++|+.+ +.... ...+..|.+...+... ..+
T Consensus 180 ~ia~~K~~i~~---~~~~~v~~~dd~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 252 (428)
T 1jbw_A 180 AIAKHKAGIIK---RGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDRD--FSVPKAKLHGWGQRFTYEDQDGRI--SDL 252 (428)
T ss_dssp HHHHHHGGGCC---TTCCEEECCCCHHHHHHHHHHHHHHTCCEEEBTTT--EEEEEEEECSSSEEEEEEETTEEE--EEE
T ss_pred HHHHHHhcccc---CCceEEEeCCCHHHHHHHHHHHHHcCCcEEEeCcc--ceeeccccccCCceEEEecCCccc--ccc
Confidence 99999999997 57899999999987665432 24567777753 22110 0111223333222111 134
Q ss_pred ccCcCChhhHHHHHHHHHHHHHHHc-C-----CCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHH
Q 015701 214 NMKVMGRHNYHNAAVAALSVLGLDI-G-----VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL 287 (402)
Q Consensus 214 ~l~l~G~~~~~Nal~A~~~a~~~~l-g-----i~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al 287 (402)
.++++|.||++|+++|+ +++..+ | ++.+.|.++|++|+ +|||||++. .++.+++| ++|||+|+++++
T Consensus 253 ~l~l~G~hn~~Na~aAi--a~~~~l~g~~~~~i~~~~i~~~L~~~~-~~gR~e~~~--~~~~viiD--~AhNp~s~~a~l 325 (428)
T 1jbw_A 253 EVPLVGDYQQRNMAIAI--QTAKVYAKQTEWPLTPQNIRQGLAASH-WPARLEKIS--DTPLIVID--GAHNPDGINGLI 325 (428)
T ss_dssp EESCCSTHHHHHHHHHH--HHHHHHHHHTTCCCCHHHHHHHHHTCC-CTTSSEEEE--TTTTEEEE--CCCSHHHHHHHH
T ss_pred ccCCCChhHHHHHHHHH--HHHHHHhhccCCCCCHHHHHHHHHhCc-CCCceEEec--CCCcEEEE--CCcCHHHHHHHH
Confidence 78999999999999999 788888 9 99999999999999 999999995 35677777 478999999999
Q ss_pred cccC---CCcEEEEEcCCCCcCCCCCCcchHhhhhcccc-ccEEEEeCC-Ch-HHH-HHHHHhCCCCccccccccHHHHH
Q 015701 288 MDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFGY-SG-VLI-WKTLVNNGLSIPCFAVANMKDAV 360 (402)
Q Consensus 288 ~~~~---~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~-~d~vi~~g~-~~-~~~-~~~l~~~~~~~~~~~~~~~~~ai 360 (402)
+.+. .+|+++|+|++.++ .+.++++.+.. +|.+++++. +. ... .+.+.+. . .+.+++|+++|+
T Consensus 326 ~~l~~~~~~~~i~V~g~~~~k-------d~~~~~~~~~~~~d~vi~~~~~~~~r~~~~~~l~~~-~--~~~~~~~~~~ai 395 (428)
T 1jbw_A 326 TALKQLFSQPITVIAGILADK-------DYAAMADRLTAAFSTVYLVPVPGTPRALPEAGYEAL-H--EGRLKDSWQEAL 395 (428)
T ss_dssp HHHHHHCSSCCEEEEECSSST-------THHHHHHHHHHHCSEEEECCCSCC------------------CBCSSHHHHH
T ss_pred HHHHHhcCCCEEEEEeeCCCC-------CHHHHHHHHhhhCCEEEEECCCCCCCCCCHHHHHhh-h--CCeecCCHHHHH
Confidence 8874 36889999998654 25556655543 788888443 22 211 1122211 1 245568999999
Q ss_pred HHHHHhcCCCCEEEEcCCCcccccccCh
Q 015701 361 NHARRMATNGDAIVLSPGCASFDEFRNF 388 (402)
Q Consensus 361 ~~~~~~~~~~d~vll~~G~~s~~~~~~~ 388 (402)
+.+.+.+ +||+||++ ||++.+.+.
T Consensus 396 ~~a~~~~-~~d~vLv~---GS~~~~~~~ 419 (428)
T 1jbw_A 396 AASLNDV-PDQPIVIT---GSLYLASAV 419 (428)
T ss_dssp HHHHHHC-TTSCEEEE---ESHHHHHHH
T ss_pred HHHHhhC-CCCeEEEE---eeHHHHHHH
Confidence 9999988 99999996 466665544
No 13
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=100.00 E-value=1.9e-47 Score=379.27 Aligned_cols=327 Identities=18% Similarity=0.175 Sum_probs=233.6
Q ss_pred eeeHHHHHHhhC---CCCCcEEEEecCCChhhHHHHHHHHHHhcCCcee--eeccC----------chhhhhhhhh----
Q 015701 28 VMSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF--VGGNL----------GNPLSEAAFH---- 88 (402)
Q Consensus 28 ~l~~~~~~~~~~---~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~--~~g~~----------g~~~~~~~~~---- 88 (402)
-|.|+..+.+.+ +++.++|+||||||||||++||+++|+++|++++ +++++ |.+++...+.
T Consensus 34 gL~r~~~ll~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~G~~vg~~tSphl~~~neri~i~g~~i~~~~~~~~~~ 113 (437)
T 3nrs_A 34 GLERVKQVAERLDLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRYTERVRIQGQELSEAEHSHSFA 113 (437)
T ss_dssp CCHHHHHHHHHTTCSCSSSEEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECCCCSSCGGGGEEETTEECCHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCccccCCEEEEECCcChHHHHHHHHHHHHHCCCcEEEECCCCcCCcceEEEECCEECCHHHHHHHHH
Confidence 466777776654 3578999999999999999999999999999984 45543 2222221110
Q ss_pred ---------------------hccCCCCCCCccEEEEEeC-cccccCCCccccccEEEEecCCcchhcCCC-CHHHHHHH
Q 015701 89 ---------------------CIALPSSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALT 145 (402)
Q Consensus 89 ---------------------~~~~~~~~~~~~~~V~E~~-~~~l~~~~~~~~p~i~iiTni~~dH~~~~~-t~e~i~~~ 145 (402)
+..+ ...++|++|+|+| +|++|.+++ ++|+++|||||+.||+++|| |+|+|+++
T Consensus 114 ~v~~~~~~~~~T~fe~~t~~a~~~f--~~~~~d~~VlEvGlggrld~tni-i~p~vaVITnI~~DHld~lG~t~e~ia~~ 190 (437)
T 3nrs_A 114 QIEAGRGDISLTYFEFGTLSALQLF--KQAKLDVVILEVGLGGRLDATNI-VDSDVAAITSIALDHTDWLGYDRESIGRE 190 (437)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHH--HHTCCSEEEEECSSSSTTSGGGG-SCCSEEEECCCCCCBCCCTTCSHHHHHHH
T ss_pred HHHHhhcCCCCCHHHHHHHHHHHHH--HhCCCCEEEEEcCCCCccccccc-cCCCEEEEcCccHHHHHHhCCcHHHHHHH
Confidence 0000 1457899999999 788998886 79999999999999999998 89999999
Q ss_pred HHHhccccCCCeEEEEeCCChh--hHHHhhcccccEEEeecCCCceec--------cccccceEEEecCCeeeEEeeecc
Q 015701 146 KCHLFSHMVNTKLGLLPFGNQH--LNEAIKGHRFNLAWIGAFPGVKID--------TEAKTASFEVPAVGVVSQLQLHNM 215 (402)
Q Consensus 146 k~~i~~~~~~~~~~v~n~dd~~--~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l 215 (402)
|++|++ +++.+|+|.||+. +.+.+....+++++++.+.++... .......+.+...+. . ...+
T Consensus 191 Ka~I~~---~~~~~V~~~d~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~l 263 (437)
T 3nrs_A 191 KAGVFR---GGKPAVVGEPDMPQSIADVAAELGAQLYRRDVAWKFSQQEPFDQQEPVDQQINGWHWQCGER--Q--LTGL 263 (437)
T ss_dssp HGGGCC---TTSEEEECCSSCCHHHHHHHHHHTCEEEEBTTTEEEEC--------------CCEEEEETTE--E--EEEE
T ss_pred HHhhcc---CCCeEEECCccHHHHHHHHHHHcCCcEEEecccceeeecccccccccccccCceEEEecCCc--c--eecc
Confidence 999997 5788999988764 444455556677888754221111 000112233322211 1 1245
Q ss_pred CcC--ChhhHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccC--
Q 015701 216 KVM--GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-- 291 (402)
Q Consensus 216 ~l~--G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~-- 291 (402)
+++ |.||+.|+++|+ ++ ..+|++.+.|.++|++|+ +|||||++. .++ .+|+| |||||+|++++++.+.
T Consensus 264 ~l~~~~~~Na~~Alaa~--~~-~~lgi~~~~i~~gL~~~~-~pGR~e~v~--~~~-~vi~D-~AHNp~a~~all~~l~~~ 335 (437)
T 3nrs_A 264 PVPNVPLANAATALAVL--HY-SELPLSDEAIRQGLQAAS-LPGRFQVVS--EQP-LLILD-VAHNPHAARYLVNRLAQV 335 (437)
T ss_dssp CCCSSCHHHHHHHHHHH--HH-HTCCCCHHHHHHHHHHCC-CTTSSEEEE--TTT-EEEEC-CCCSHHHHHHHHHHHHHT
T ss_pred CCcchhHHHHHHHHHHH--HH-hCCCCCHHHHHHHHHhCC-CCCceEEEe--cCC-eEEEE-CCCCHHHHHHHHHHHHhh
Confidence 555 888888888887 44 568999999999999999 999999995 344 57777 5999999999887664
Q ss_pred --------CCcEEEEEcCCCCcCCCCCCcchHhhhhcccc-ccEEEEeCCCh------HHHHHHHHhCCCCccccccccH
Q 015701 292 --------GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFGYSG------VLIWKTLVNNGLSIPCFAVANM 356 (402)
Q Consensus 292 --------~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~-~d~vi~~g~~~------~~~~~~l~~~~~~~~~~~~~~~ 356 (402)
++|+++|+|++.++. ++++++.+.. .|.+++++.+. +.+.+.++. . ..++|+
T Consensus 336 ~~~~~~~~~~r~i~V~G~~~dkd-------~~~~~~~l~~~~~~v~~~~~~~~r~~~~~~l~~~~~~-----~-~~~~d~ 402 (437)
T 3nrs_A 336 INPVNASKQGKVRAVVGMLSDKD-------IAGTLACLSERVDEWYCAPLEGPRGASAGQLAEHLVS-----A-RQFSDV 402 (437)
T ss_dssp C--------CCEEEEECCBTTBC-------HHHHHHHHTTTCCEEEECCCSSTTBCCHHHHHTTCSS-----C-EECSSH
T ss_pred cchhhhcCCCCEEEEEeCCCCCC-------HHHHHHHHHhcCCEEEEeCCCCCCCCCHHHHHHHHhh-----C-CCcCCH
Confidence 468999999887653 5666666653 67788876542 334333321 1 467899
Q ss_pred HHHHHHHHHhcCCCCEEEEcCCCcccccccCh
Q 015701 357 KDAVNHARRMATNGDAIVLSPGCASFDEFRNF 388 (402)
Q Consensus 357 ~~ai~~~~~~~~~~d~vll~~G~~s~~~~~~~ 388 (402)
++|++.+.+.++++|+||++ | |++.+.++
T Consensus 403 ~~Ai~~a~~~a~~~D~VLv~-G--S~~~v~~~ 431 (437)
T 3nrs_A 403 ETAWRQAMQDADTQDVVIVC-G--SFHTVAHV 431 (437)
T ss_dssp HHHHHHHHHHCCTTCEEEEE-S--SHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEE-e--hHHHHHHH
Confidence 99999999999999999996 5 55554443
No 14
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=100.00 E-value=5.5e-47 Score=380.22 Aligned_cols=336 Identities=18% Similarity=0.206 Sum_probs=239.9
Q ss_pred ceeeHHHHHHhhC---CCCCcEEEEecCCChhhHHHHHHHHHHhcCCcee--eeccC----------chhhhhhhh----
Q 015701 27 RVMSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF--VGGNL----------GNPLSEAAF---- 87 (402)
Q Consensus 27 ~~l~~~~~~~~~~---~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~--~~g~~----------g~~~~~~~~---- 87 (402)
+.|+|+..+.+.+ +++.++|+||||||||||++||+++|++.|++++ +++++ |.+++...+
T Consensus 45 ~~L~r~~~ll~~lg~p~~~~~vI~VtGTNGKtST~~~l~~iL~~~G~~vG~~tSp~l~~~~eri~i~G~~i~~~~~~~~~ 124 (487)
T 2vos_A 45 PSLTRISALMDLLGSPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSPVERISIDGKPISPAQYVATY 124 (487)
T ss_dssp TTCHHHHHHHHHTTCGGGSSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCchhcCeEEEEeCCCCcHHHHHHHHHHHHHcCCCeEEECCCCcCcccceEEECCEECCHHHHHHHH
Confidence 5778888887765 2467899999999999999999999999999984 33332 222211100
Q ss_pred ----------------------------h------hccCCCCCCCccEEEEEeCc-ccccCCCccccccEEEEecCCcch
Q 015701 88 ----------------------------H------CIALPSSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDH 132 (402)
Q Consensus 88 ----------------------------~------~~~~~~~~~~~~~~V~E~~~-~~l~~~~~~~~p~i~iiTni~~dH 132 (402)
+ +..+ ...++|++|+|+|+ +++|.++. ++|+++|||||+.||
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~f--~~~~~d~~VlEvg~gg~~d~tn~-i~p~vaVITnI~~DH 201 (487)
T 2vos_A 125 REIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAF--ADAPVDVAVVEVGMGGRWDATNV-INAPVAVITPISIDH 201 (487)
T ss_dssp HHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHH--HHTTCSEEEEECSSSSTTSTTCS-SCCSEEEECCCCCCB
T ss_pred HHHHHHHhhhhhccccccccCCCCCCHHHHHHHHHHHHH--HhCCCCEEEEEcCCCCccccccc-cCCCEEEECCcchhh
Confidence 0 0000 14567899999996 57888876 899999999999999
Q ss_pred hcCCC-CHHHHHHHHHHhcccc---CCCeEEEEeCCChhhHHHhh----cccccEEEeecCCCceecc---ccccceEEE
Q 015701 133 LERHK-TMKNYALTKCHLFSHM---VNTKLGLLPFGNQHLNEAIK----GHRFNLAWIGAFPGVKIDT---EAKTASFEV 201 (402)
Q Consensus 133 ~~~~~-t~e~i~~~k~~i~~~~---~~~~~~v~n~dd~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 201 (402)
+++|+ |+|+|+++|++|++.+ ++++.+|+|.|||.+..+.. ....++++++.+ +.+.. ...+..|.+
T Consensus 202 ld~lG~t~e~ia~~Ka~i~~~~~~~k~~~~~V~~~dd~~~~~~~~~~a~~~~~~~~~~g~d--~~~~~~~~~~~g~~~~~ 279 (487)
T 2vos_A 202 VDYLGADIAGIAGEKAGIITRAPDGSPDTVAVIGRQVPKVMEVLLAESVRADASVAREDSE--FAVLRRQIAVGGQVLQL 279 (487)
T ss_dssp CSCSSCCHHHHHHHHHTTCCCCC--CCCCEEEECCCCHHHHHHHHHHHHHTTCEEEEBTTT--BEEEEEEEETTEEEEEE
T ss_pred hhhhCCcHHHHHHHHHHHhhcccccCCCCEEEEeCCCHHHHHHHHHHHHHcCCeEEEecCc--eEEEeeccccCCceEEE
Confidence 99998 8999999999999764 67889999999997655432 224566677643 22211 111122333
Q ss_pred ecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHc-------CCCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEc
Q 015701 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI-------GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDD 274 (402)
Q Consensus 202 ~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~l-------gi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD 274 (402)
...+.. +..+.++++|.||++|+++|+ +++..+ |++.+.|+++|++|+ +|||||++. .++ .+|+|
T Consensus 280 ~~~~~~--~~~~~l~l~G~hn~~Na~aAi--aa~~~l~~~~~~~gi~~~~i~~gL~~~~-~pGR~e~v~--~~~-~vi~D 351 (487)
T 2vos_A 280 QGLGGV--YSDIYLPLHGEHQAHNAVLAL--ASVEAFFGAGAQRQLDGDAVRAGFAAVT-SPGRLERMR--SAP-TVFID 351 (487)
T ss_dssp EETTEE--EEEEEECCCSHHHHHHHHHHH--HHHHHHTTC----CCCHHHHHHHHHTCC-CTTSSEEEE--TTT-EEEEC
T ss_pred ecCCcc--cceeecCCCCHHHHHHHHHHH--HHHHHHhhccccCCCCHHHHHHHHHhCc-CCCceEEEc--CCC-eEEEE
Confidence 222211 113468999999999999999 777777 899999999999999 999999995 344 56677
Q ss_pred CCCCCHHHHHHHHcccC----CCcEEEEEcCCCCcCCCCCCcchHhhhhcccc-ccEEEEeCCC------hHHHHHHHHh
Q 015701 275 SKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFGYS------GVLIWKTLVN 343 (402)
Q Consensus 275 ~~a~np~s~~~al~~~~----~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~-~d~vi~~g~~------~~~~~~~l~~ 343 (402)
++|||+|++++++.+. .+|+++|||++.+++ ++++.+.+.. .|.+++++.+ .+.+.+.++.
T Consensus 352 -~AHNp~a~~a~l~~l~~~~~~~~~i~V~G~~~dkd-------~~~~~~~l~~~~d~vilt~~~~~r~~~~~~l~~~~~~ 423 (487)
T 2vos_A 352 -AAHNPAGASALAQTLAHEFDFRFLVGVLSVLGDKD-------VDGILAALEPVFDSVVVTHNGSPRALDVEALALAAGE 423 (487)
T ss_dssp -CCCSHHHHHHHHHHHHHSCCCSEEEEEECCBTTBC-------HHHHHHHHTTTCSEEEECCCSCTTBCCHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCC-------HHHHHHHHHhhCCEEEEeCCCCcCCCCHHHHHHHHHh
Confidence 6999999999988763 368999999998763 3444444432 6788887532 3456555533
Q ss_pred C-CCCccccccccHHHHHHHHHHhcCCC-------------CEEEEcCCCcccccccC
Q 015701 344 N-GLSIPCFAVANMKDAVNHARRMATNG-------------DAIVLSPGCASFDEFRN 387 (402)
Q Consensus 344 ~-~~~~~~~~~~~~~~ai~~~~~~~~~~-------------d~vll~~G~~s~~~~~~ 387 (402)
. +. ..+.+++|+++|++.+.+.++++ |+||++ | |++.+.+
T Consensus 424 ~~~~-~~~~~~~~~~~Ai~~a~~~a~~~~~~~~~~~~~~~~d~vlv~-G--S~y~vg~ 477 (487)
T 2vos_A 424 RFGP-DRVRTAENLRDAIDVATSLVDDAAADPDVAGDAFSRTGIVIT-G--SVVTAGA 477 (487)
T ss_dssp HHCG-GGEEECSSHHHHHHHHHHHHHHHHTCTTTTC----CEEEEEE-S--SHHHHHH
T ss_pred hcCC-CceEecCCHHHHHHHHHHhcccCcccccccccccCCCEEEEE-e--eHHHHHH
Confidence 1 11 13456789999999998887765 888885 5 5554443
No 15
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=100.00 E-value=4.3e-47 Score=377.23 Aligned_cols=316 Identities=16% Similarity=0.149 Sum_probs=223.3
Q ss_pred CCCcEEEEecCCChhhHHHHHHHHHHhcCCceee--eccC----------chhhhhhhhh-----------h--------
Q 015701 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV--GGNL----------GNPLSEAAFH-----------C-------- 89 (402)
Q Consensus 41 ~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~--~g~~----------g~~~~~~~~~-----------~-------- 89 (402)
++.++|+||||||||||++||+++|+..|++++. ++++ |.+++...+. .
T Consensus 50 ~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~vg~~~Sphl~~~neri~inG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (442)
T 1o5z_A 50 LEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETMEPILNELDKEEIFS 129 (442)
T ss_dssp GSSEEEEEECSSSHHHHHHHHHHHHHHHTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHTTSTTTC
T ss_pred hcCCEEEEECCcCHHHHHHHHHHHHHHCCCCEEEECCCCcCccceeEEECCEECCHHHHHHHHHHHHHHHhhhcccccCC
Confidence 4678999999999999999999999999999863 3322 4443322110 0
Q ss_pred ccCC----------CCCCCccEEEEEeC-cccccCCCccccccEEEEecCCcchhcCCC-CHHHHHHHHHHhccccCCCe
Q 015701 90 IALP----------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTK 157 (402)
Q Consensus 90 ~~~~----------~~~~~~~~~V~E~~-~~~l~~~~~~~~p~i~iiTni~~dH~~~~~-t~e~i~~~k~~i~~~~~~~~ 157 (402)
.++. ....++|++|+|+| ++++|.++. ++|+++|||||+.||+++|+ |+|+|+++|+++++ +++
T Consensus 130 ~T~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~d~t~~-~~P~vaViTnI~~DHld~~G~t~e~ia~~K~~i~~---~~~ 205 (442)
T 1o5z_A 130 PSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRLDATNV-VFPLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIK---ERV 205 (442)
T ss_dssp CCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTCGGGG-CCCSCEEECCCCC-------CCHHHHHHHHGGGCC---TTC
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCcccccc-CCCCEEEECCccHhhhhhhCcCHHHHHHHHHhhcc---CCc
Confidence 0000 01346789999999 778888776 89999999999999999998 99999999999997 578
Q ss_pred EEEEeCCChhhHHHhhc----ccccEEEeecCCCceecc---ccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHH
Q 015701 158 LGLLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAA 230 (402)
Q Consensus 158 ~~v~n~dd~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~ 230 (402)
.+|+|.|||....+... ...++++++.+ +.... ......+.+...+ . +..+.++++|.||++|+++|+
T Consensus 206 ~~V~~~dd~~~~~~~~~~a~~~~~~~~~~~~d--~~~~~~~~~~~~~~~~~~~~~-~--~~~~~l~l~G~hn~~NalaAi 280 (442)
T 1o5z_A 206 PLVTGERKREALKVMEDVARKKSSRMYVIDKD--FSVKVKSLKLHENRFDYCGEN-T--FEDLVLTMNGPHQIENAGVAL 280 (442)
T ss_dssp CEEECCCCHHHHHHHHHHHHHHTCCEEEBTTT--BEEEEEECCTTCEEEEEESSS-E--EEEEEESSCSTHHHHHHHHHH
T ss_pred cEEEcCCChHHHHHHHHHHHHcCCcEEEeCcc--eeeeccccccCCceEEEeccc-c--ccccccCCCcHhHHHHHHHHH
Confidence 89999999987665432 24567777753 22110 1112223332221 1 113478999999999999999
Q ss_pred HHHHHH--HcCCCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccC----CCcEEEEEcCCCC
Q 015701 231 LSVLGL--DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAK 304 (402)
Q Consensus 231 ~~a~~~--~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~~~ 304 (402)
+++. .+|++.+.|.++|++|+ +|||||++.. .++. +|.| ++|||+|++++++.+. ++|+++|+|++.+
T Consensus 281 --a~~~~~~lgi~~~~i~~~L~~~~-~~gR~e~~~~-~~~~-viiD-~AhNp~s~~~~l~~l~~~~~~~~~i~V~g~~~d 354 (442)
T 1o5z_A 281 --KTLEATGLPLSEKAIREGLKNAK-NLGRFEILEK-NGKM-YILD-GAHNPHGAESLVRSLKLYFNGEPLSLVIGILDD 354 (442)
T ss_dssp --HHHHHHCCCCCHHHHHHHHHHCC-CTTSSEEEEE-TTEE-EEEC-CCCSHHHHHHHHHHHHHHCTTCCEEEEECCCTT
T ss_pred --HHHHHhhcCCCHHHHHHHHHhCC-CCCceEEEEc-CCCe-EEEE-CCcCHHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 8888 89999999999999999 9999999952 3354 4555 6999999999998873 3689999998865
Q ss_pred cCCCCCCcchHhhhhcccc-ccEEEEeCCC------hHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcC
Q 015701 305 VLNGQESNGFEKLIEPLNH-HRCVITFGYS------GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377 (402)
Q Consensus 305 ~~~~~~~~~~~~~~~~l~~-~d~vi~~g~~------~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~ 377 (402)
+. +.++.+.+.. +|.+++++.+ .+.+.+.++..+. .+..++|+++|++.+ +|+||++
T Consensus 355 kd-------~~~~~~~l~~~~d~vi~~~~~~~r~~~~~~i~~~~~~~~~--~~~~~~~~~~Ai~~a------~d~VLv~- 418 (442)
T 1o5z_A 355 KN-------REDILRKYTGIFERVIVTRVPSPRMKDMNSLVDMAKKFFK--NVEVIEDPLEAIEST------ERATVVT- 418 (442)
T ss_dssp SC-------HHHHHGGGTTTCSEEEECCCSSTTCCCHHHHHHHHHHHCS--CCEECSSHHHHHHTC------CSEEEEE-
T ss_pred CC-------HHHHHHHHHhhCCEEEEECCCCCCCCCHHHHHHHHHhcCC--CceecCCHHHHHHhC------CCEEEEE-
Confidence 42 5566665543 7888887633 3566666654332 345678999998776 8999985
Q ss_pred CCcccccccChh
Q 015701 378 GCASFDEFRNFE 389 (402)
Q Consensus 378 G~~s~~~~~~~~ 389 (402)
||++.+.++.
T Consensus 419 --GS~~~~~~~~ 428 (442)
T 1o5z_A 419 --GSLFLVGYVR 428 (442)
T ss_dssp --SCHHHHHHHH
T ss_pred --eeHHHHHHHH
Confidence 5677666653
No 16
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=100.00 E-value=9.1e-46 Score=366.36 Aligned_cols=320 Identities=18% Similarity=0.138 Sum_probs=226.5
Q ss_pred HHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCcee--eeccC----------chhhhhhhhh-------h-c
Q 015701 31 ELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF--VGGNL----------GNPLSEAAFH-------C-I 90 (402)
Q Consensus 31 ~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~--~~g~~----------g~~~~~~~~~-------~-~ 90 (402)
.++.+.... ++.++|+||||||||||++||+++|++.|++++ +++++ |.+++...+. . .
T Consensus 38 ~l~~lg~p~-~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~~g~~~s~~l~~~neri~i~g~~i~~~~~~~~~~~v~~~~ 116 (422)
T 1w78_A 38 VAARLGVLK-PAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPESAHTASFAEIESAR 116 (422)
T ss_dssp HHHHHTCSS-CSSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCcc-cCCcEEEEeCCcChHHHHHHHHHHHHHCCCCEEEECCCCcCcCceEEEECCEECCHHHHHHHHHHHHHHh
Confidence 334444333 578999999999999999999999999999874 34432 1121111000 0 0
Q ss_pred -cCC--------------CCCCCccEEEEEeC-cccccCCCccccccEEEEecCCcchhcCCC-CHHHHHHHHHHhcccc
Q 015701 91 -ALP--------------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHM 153 (402)
Q Consensus 91 -~~~--------------~~~~~~~~~V~E~~-~~~l~~~~~~~~p~i~iiTni~~dH~~~~~-t~e~i~~~k~~i~~~~ 153 (402)
..+ ....++|++|+|+| ++++|.++. ++|+++|||||+.||+++|+ |+|+|+++|+++++
T Consensus 117 ~~~~~t~~e~~t~~a~~~~~~~~~d~~VlEvgl~~~~d~t~~-~~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~-- 193 (422)
T 1w78_A 117 GDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNI-VDADVAVVTSIALDHTDWLGPDRESIGREKAGIFR-- 193 (422)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHTCSEEEEECSSSSTTSGGGG-SCCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCC--
T ss_pred ccCCCChHHHHHHHHHHHHHHcCCCEEEEecCCCcccccccC-CCCCEEEECCcChhhhhhhCCCHHHHHHHHHhhcc--
Confidence 000 01346789999999 678887765 79999999999999999998 89999999999997
Q ss_pred CCCeEEEEeCCChh--hHHHhhcccccEEEeecCCCceeccccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHH
Q 015701 154 VNTKLGLLPFGNQH--LNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231 (402)
Q Consensus 154 ~~~~~~v~n~dd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~ 231 (402)
+++.+|+|.||+. +...+.....++++|+.+ +.+..+. ..+.+...+... ..++++ .||++|+++|+
T Consensus 194 -~~~~~v~~~d~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~--~~~~~~~~~~~~----~~l~l~-~hn~~Na~aAi- 262 (422)
T 1w78_A 194 -SEKPAIVGEPEMPSTIADVAQEKGALLQRRGVE--WNYSVTD--HDWAFSDAHGTL----ENLPLP-LVPQPNAATAL- 262 (422)
T ss_dssp -TTSEEEECCSSCCHHHHHHHHHHTCEEEEBTTT--BEEEECS--SCEEEEETTEEE----EEECCC-SSCHHHHHHHH-
T ss_pred -CCCcEEEcCccHHHHHHHHHHHcCCceEEeCcc--eeeeccC--ceEEEecCCccc----ccCCch-HHHHHHHHHHH-
Confidence 4678899887764 223333334567777743 2222111 122222222111 357888 99999999999
Q ss_pred HHHHHHc--CCCHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccC----CCcEEEEEcCCCCc
Q 015701 232 SVLGLDI--GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKV 305 (402)
Q Consensus 232 ~a~~~~l--gi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~~~~ 305 (402)
+++..+ |++.+.|.++|++|+ +|||||++. .++. +|+| ++|||+|++++++.+. ++|+++|+|++.++
T Consensus 263 -a~~~~~~~gi~~~~i~~~L~~~~-~~gR~e~~~--~~~~-~i~D-~Ahnp~s~~~~l~~l~~~~~~~~~i~V~g~~~~k 336 (422)
T 1w78_A 263 -AALRASGLEVSENAIRDGIASAI-LPGRFQIVS--ESPR-VIFD-VAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDK 336 (422)
T ss_dssp -HHHHHHTCCCCHHHHHHHHHHCC-CTTSSEEEE--TTTE-EEEE-CCCSHHHHHHHHHHHHHSCSCSCEEEEECCBTTS
T ss_pred -HHHHHhCCCCCHHHHHHHHHhCC-CCceEEEEe--CCCe-EEEE-CCCCHHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 677765 899999999999999 899999995 3454 5555 5999999999977762 46899999988664
Q ss_pred CCCCCCcchHhhhhccc-cccEEEEeCCC------hHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCC
Q 015701 306 LNGQESNGFEKLIEPLN-HHRCVITFGYS------GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378 (402)
Q Consensus 306 ~~~~~~~~~~~~~~~l~-~~d~vi~~g~~------~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G 378 (402)
.+.++++.+. .+|.++++|.+ .+.+.+.++. +..++|+++|++.+.+.+++||+||++ |
T Consensus 337 -------d~~~~~~~l~~~~d~vi~~~~~~~r~~~~~~l~~~~~~------~~~~~~~~~ai~~a~~~~~~~d~vLv~-G 402 (422)
T 1w78_A 337 -------DIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGN------GKSFDSVAQAWDAAMADAKAEDTVLVC-G 402 (422)
T ss_dssp -------CHHHHHHHHHTTCSEEEECCCCSSSBCCHHHHHHHHSS------CEECSSHHHHHHHHHHHCCTTCEEEEE-S
T ss_pred -------CHHHHHHHHHhhCCEEEEECCCCCCCCCHHHHHHHHhh------cccCCCHHHHHHHHHHhcCCCCEEEEE-e
Confidence 3566766654 37888888743 3445554431 345689999999999999999999996 5
Q ss_pred CcccccccC
Q 015701 379 CASFDEFRN 387 (402)
Q Consensus 379 ~~s~~~~~~ 387 (402)
|++.+.+
T Consensus 403 --S~~~~~~ 409 (422)
T 1w78_A 403 --SFHTVAH 409 (422)
T ss_dssp --SHHHHHH
T ss_pred --eHHHHHH
Confidence 4554443
No 17
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=100.00 E-value=2e-45 Score=351.46 Aligned_cols=248 Identities=17% Similarity=0.191 Sum_probs=193.7
Q ss_pred ceeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCcee-e----ec
Q 015701 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF-V----GG 76 (402)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~-~----~g 76 (402)
.+++|+||+++++||++++|+++|+|+++++|++++.+.++.++|+||||||||||++||+++|+..|.++. + .+
T Consensus 67 ~d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~~g~~~~ 146 (326)
T 3eag_A 67 ADVYVIGNVAKRGMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPE 146 (326)
T ss_dssp CSEEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECSSEET
T ss_pred CCEEEECCCcCCCCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEecceec
Confidence 478999999999999999999999999999999987532567999999999999999999999999998763 2 25
Q ss_pred cCchhhhhhhhhhccCCCCCCCccEEEEEeCcccccCC-----CccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcc
Q 015701 77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIP-----NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS 151 (402)
Q Consensus 77 ~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~-----~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~ 151 (402)
++|.+...... .+.....+.+++|+|+|+++.... ...++|+++|||||++||+|+|+|+|+|+++|.+|++
T Consensus 147 n~~~~~~~~~p---~~~~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~vaviTNI~~DHLd~~gs~e~y~~aK~~i~~ 223 (326)
T 3eag_A 147 NFGVSARLPQT---PRQDPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVR 223 (326)
T ss_dssp TSSCSEECCCC---CSSCTTSCCCEEEEECCCSEEETTEEEEGGGGSCCSEEEECCCCCCCTTTSSSHHHHHHHHHHHHT
T ss_pred cCCcceecCCc---cccccCCCCCEEEEEccccccchhhcccceeEecCCEEEECCCcHHHHhhcCCHHHHHHHHHHHHH
Confidence 66654221100 000123467899999998664321 1247999999999999999999999999999999999
Q ss_pred ccCCCeEEEEeCCChhhHHHhhc-ccccEEEeecCCCceecc-ccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHH
Q 015701 152 HMVNTKLGLLPFGNQHLNEAIKG-HRFNLAWIGAFPGVKIDT-EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVA 229 (402)
Q Consensus 152 ~~~~~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A 229 (402)
.+++++.+|+|.|||.++.+... ...++++||...++.... ...+. |.+...+.. +..+.++++|+||++|+++|
T Consensus 224 ~~~~~~~~V~n~Dd~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~g~-f~~~~~~~~--~~~~~l~l~G~hNv~NalaA 300 (326)
T 3eag_A 224 TVPSEGLIVCNGRQQSLQDTLDKGCWTPVEKFGTEHGWQAGEANADGS-FDVLLDGKT--AGRVKWDLMGRHNRMNALAV 300 (326)
T ss_dssp TSCTTSEEEEESSCHHHHHHHTTCCCSCEEEESSSSSEEEEEECTTSC-EEEEETTEE--EEEECCCCCSHHHHHHHHHH
T ss_pred hCCCCCEEEEeCCCHHHHHHHhhccCCCEEEECCCCcEEEEEecCCcE-EEEEECCce--EEEEEecCCcHHHHHHHHHH
Confidence 98889999999999999887653 345778888643333210 11122 444333322 22357999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHhhcCCCCCC
Q 015701 230 ALSVLGLDIGVDVEALNSTIEILRTPPH 257 (402)
Q Consensus 230 ~~~a~~~~lgi~~~~i~~~L~~~~~~~g 257 (402)
+ ++++.+|++.+.|+++|++|+|++|
T Consensus 301 i--a~a~~lGi~~~~i~~~L~~f~gv~R 326 (326)
T 3eag_A 301 I--AAARHVGVDIQTACEALGAFKNVKR 326 (326)
T ss_dssp H--HHHHHHTCCHHHHHHHHHTCCCEEC
T ss_pred H--HHHHHcCCCHHHHHHHHHhCCCCCC
Confidence 9 8999999999999999999998654
No 18
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=99.79 E-value=7.5e-19 Score=150.35 Aligned_cols=139 Identities=14% Similarity=0.210 Sum_probs=87.9
Q ss_pred HHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHccc----CCCcEEEEEcCCCCcCCCCCCcchHhh
Q 015701 242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLGGQAKVLNGQESNGFEKL 317 (402)
Q Consensus 242 ~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~----~~~~~i~V~g~~~~~~~~~~~~~~~~~ 317 (402)
.++|+++|++|+|++||||++. ..+++++||| |||||++++++++.+ +++|+++|||+..... ..+..+.++
T Consensus 11 ~~~i~~~L~~f~gv~~R~E~i~-~~~g~~vi~D-yaHnP~si~a~l~al~~~~~~~riivvf~~g~~s~--r~k~~~~~~ 86 (163)
T 3mvn_A 11 VDLGTENLYFQSNAQRRLEVKG-VVNNITVYDD-FAHHPTAITATIDALRAKVGQQRILAVLEPRSNTM--KMGVHKHEL 86 (163)
T ss_dssp ----------------CCEEEE-EETTEEEEEE-CCCSHHHHHHHHHHHHHHHTTSCEEEEECCC-----------CHHH
T ss_pred HHHHHHHHHhCCCCCCCeEEEe-cCCCcEEEEc-CCCCHHHHHHHHHHHHHhcCCCcEEEEECCCCcch--hhHHHHHHH
Confidence 4678999999999999999996 3678999999 699999999988776 3478999998653210 112245677
Q ss_pred hhccccccEEEEeCCChH--HHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCcccccccC
Q 015701 318 IEPLNHHRCVITFGYSGV--LIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387 (402)
Q Consensus 318 ~~~l~~~d~vi~~g~~~~--~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~~s~~~~~~ 387 (402)
++.+..+|.+|+++.... .+.+.++..+ .++.+++|+++|++.+.+.+++||+||++ |+++++.+.+
T Consensus 87 ~~~~~~aD~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~eai~~~~~~~~~gDvVLv~-Gsg~~~~~~~ 155 (163)
T 3mvn_A 87 ATSLQDADSVFIYQPPTIEWQVSEVLANLA--QPAISADDVDELVMRIVQQAKPNDHILIM-SNGAFGGIHQ 155 (163)
T ss_dssp HHHHTTCSEEEEECC----CCHHHHHTTCC--SCEEEESSHHHHHHHHHHHCCTTCEEEEE-CSSCGGGHHH
T ss_pred HHHHhcCCEEEEECCCCcccCHHHHHhhCC--CCeEEECCHHHHHHHHHHhCCCCCEEEEE-CCCCHHHHHH
Confidence 777666899999985421 1233333222 35677899999999999999999999996 9999887654
No 19
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=94.57 E-value=0.0098 Score=58.53 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=50.3
Q ss_pred eeeeeccccC-CCcHHHHHHHhcCCce--eeHHHHHHhhCC---CCCc-EEEEecCCChhhH-HHHHHHHHHhc
Q 015701 3 MLWLFLLEFQ-LKATGLACLLQSGKRV--MSELDFAAQVIP---RSIK-ILAVTGTNGKSTV-VTFVGQMLNHL 68 (402)
Q Consensus 3 ~~~~~~~~~~-~~~p~~~~a~~~~~~~--l~~~~~~~~~~~---~~~~-vI~VTGT~GKTTt-~~ml~~iL~~~ 68 (402)
.++|.++..+ .+++....|++.++++ ...+++....++ .+.+ +|+|| |+|||++ +.+|.+-|+..
T Consensus 74 ~lVi~at~~~~~n~~i~~~a~~~~i~vn~~d~~e~~~~~~pa~~~~~~l~iaIs-T~Gksp~la~~ir~~ie~~ 146 (457)
T 1pjq_A 74 WLAIAATDDDTVNQRVSDAAESRRIFCNVVDAPKAASFIMPSIIDRSPLMVAVS-SGGTSPVLARLLREKLESL 146 (457)
T ss_dssp SEEEECCSCHHHHHHHHHHHHHTTCEEEETTCTTSSSEECCEEEEETTEEEEEE-CTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHcCCEEEECCCcccCceEeeeEEEeCCeEEEEE-CCCCChHHHHHHHHHHHHh
Confidence 4667777776 3666788899999998 788887765542 2345 99999 9999998 88898888764
No 20
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.12 E-value=0.086 Score=49.00 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=29.4
Q ss_pred CCCcEEEEec--CCChhhHHHHHHHHHHhcCCceee
Q 015701 41 RSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 41 ~~~~vI~VTG--T~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
...++|+|+| -.|||||+.-|+..|...|++|..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVll 81 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQ 81 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEE
Confidence 3678999995 678999999999999999999853
No 21
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.01 E-value=0.15 Score=43.60 Aligned_cols=32 Identities=28% Similarity=0.469 Sum_probs=27.3
Q ss_pred CcEEEEe---cCCChhhHHHHHHHHHHhcCCceee
Q 015701 43 IKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 43 ~~vI~VT---GT~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
+++|+|+ |-.||||++..|+..|...|.++..
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vll 35 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAV 35 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEE
Confidence 4688898 5578999999999999999988743
No 22
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=91.97 E-value=0.16 Score=45.46 Aligned_cols=40 Identities=30% Similarity=0.434 Sum_probs=31.4
Q ss_pred HHhhCCCCCcEEEEecCC---ChhhHHHHHHHHHHhcCCceee
Q 015701 35 AAQVIPRSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 35 ~~~~~~~~~~vI~VTGT~---GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
++++..++++.|.||||. |||+++.-|...|++.|+++..
T Consensus 18 ~~~~~~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~ 60 (251)
T 3fgn_A 18 ENLYFQSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAV 60 (251)
T ss_dssp ----CCSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHhcccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 444444578999999996 8999999999999999998743
No 23
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=91.92 E-value=0.17 Score=44.69 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=30.0
Q ss_pred CCCcEEEEecC---CChhhHHHHHHHHHHhcCCceee
Q 015701 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 41 ~~~~vI~VTGT---~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
.+++.|.|||| .|||+++.-|...|++.|+++..
T Consensus 2 ~~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~ 38 (228)
T 3of5_A 2 NAMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLC 38 (228)
T ss_dssp TTCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEE
Confidence 46789999999 69999999999999999998743
No 24
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.48 E-value=0.24 Score=41.52 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=28.3
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCceee
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
+.+++|+|+|.. ||||++..|...|...|+++..
T Consensus 2 ~~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ 37 (169)
T 1xjc_A 2 NAMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGT 37 (169)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeE
Confidence 357899999985 8999999999999999988744
No 25
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=90.63 E-value=0.22 Score=43.25 Aligned_cols=31 Identities=29% Similarity=0.187 Sum_probs=27.0
Q ss_pred cEEEEecC---CChhhHHHHHHHHHHhcCCceee
Q 015701 44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 44 ~vI~VTGT---~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
++|.||++ .||||++.-|+..|.+.|.++..
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll 35 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAG 35 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 57888876 68999999999999999998854
No 26
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=89.68 E-value=0.29 Score=43.09 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=26.8
Q ss_pred CCCcEEEEe---cCCChhhHHHHHHHHHHhc-CCce
Q 015701 41 RSIKILAVT---GTNGKSTVVTFVGQMLNHL-GIEA 72 (402)
Q Consensus 41 ~~~~vI~VT---GT~GKTTt~~ml~~iL~~~-g~~~ 72 (402)
+..++|+|+ |-.||||++..|+..|... |.++
T Consensus 2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~V 37 (245)
T 3ea0_A 2 NAKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHV 37 (245)
T ss_dssp -CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCE
T ss_pred CCCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCE
Confidence 456889998 5578999999999999988 8776
No 27
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=89.36 E-value=0.97 Score=41.42 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=28.6
Q ss_pred CCCcEEEEecC---CChhhHHHHHHHHHHhcCCcee
Q 015701 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 41 ~~~~vI~VTGT---~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
++.++|.||++ .||||++.-|+..|.+.|.++.
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVL 137 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVL 137 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEE
Confidence 45689999986 6899999999999999988773
No 28
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=88.69 E-value=0.75 Score=41.54 Aligned_cols=33 Identities=18% Similarity=0.374 Sum_probs=28.6
Q ss_pred CCCcEEEEecC---CChhhHHHHHHHHHHhcCCcee
Q 015701 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 41 ~~~~vI~VTGT---~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
++.++|.||++ .||||++.-|+..|.+.|.++.
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVL 115 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTL 115 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEE
Confidence 46789999965 6999999999999999998773
No 29
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=88.36 E-value=0.81 Score=40.86 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=32.3
Q ss_pred HHHHHHhhCCCCCcEEEEecCC---ChhhHHHHHHHHHHhcCCceee
Q 015701 31 ELDFAAQVIPRSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 31 ~~~~~~~~~~~~~~vI~VTGT~---GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
..+...++. +..++|+|++++ ||||++..|+..|...|.++.+
T Consensus 7 ~~~~a~~l~-~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~Vll 52 (262)
T 2ph1_A 7 DEEIKERLG-KIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGI 52 (262)
T ss_dssp HHHHHHHHT-TCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred hhhhhhhhc-cCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 334444444 456799998664 6999999999999999988743
No 30
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=88.03 E-value=0.78 Score=41.82 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=28.3
Q ss_pred CCCcEEEEecC---CChhhHHHHHHHHHHhcCCcee
Q 015701 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 41 ~~~~vI~VTGT---~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
++.++|.||++ .||||++.-|+..|.+.|.++.
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVL 125 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVL 125 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEE
Confidence 45689999876 5899999999999999988773
No 31
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=87.97 E-value=0.46 Score=42.37 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=28.1
Q ss_pred CCCcEEEEecCC---ChhhHHHHHHHHHHhcCCceee
Q 015701 41 RSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 41 ~~~~vI~VTGT~---GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
++.++|+|++++ ||||++..|+..|...|.++.+
T Consensus 4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vll 40 (257)
T 1wcv_1 4 AKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLL 40 (257)
T ss_dssp -CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEE
Confidence 356899998654 7999999999999999988743
No 32
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=87.87 E-value=0.55 Score=41.75 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=29.8
Q ss_pred CCCcEEEEecC---CChhhHHHHHHHHHHhcCCceee
Q 015701 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 41 ~~~~vI~VTGT---~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
+..+.|.|||| .|||+++.-|.+.|++.|.++..
T Consensus 19 ~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~ 55 (242)
T 3qxc_A 19 FQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTIL 55 (242)
T ss_dssp CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred hcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEE
Confidence 35689999999 69999999999999999998743
No 33
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=87.21 E-value=0.61 Score=40.71 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=25.7
Q ss_pred cEEEEecC---CChhhHHHHHHHHHHhcCCcee
Q 015701 44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 44 ~vI~VTGT---~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
++|+|+++ .||||++..|+..|.+.|.++.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~Vl 35 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVL 35 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 57888754 5899999999999999998874
No 34
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=86.86 E-value=0.63 Score=42.26 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=26.4
Q ss_pred cEEEEe---cCCChhhHHHHHHHHHHhcCCcee
Q 015701 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 44 ~vI~VT---GT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
++|+|+ |-.||||++..|+..|...|.++.
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vl 37 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVA 37 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 589998 567899999999999999998874
No 35
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=85.74 E-value=0.78 Score=40.59 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=25.4
Q ss_pred cEEEEec---CCChhhHHHHHHHHHHhcCCcee
Q 015701 44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 44 ~vI~VTG---T~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
++|+|++ -.||||++..|+..|...|.++.
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~Vl 35 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTV 35 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEE
Confidence 5788864 56899999999999999998873
No 36
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=85.19 E-value=0.8 Score=39.44 Aligned_cols=28 Identities=32% Similarity=0.516 Sum_probs=23.9
Q ss_pred EEEEe---cCCChhhHHHHHHHHHHhcCCcee
Q 015701 45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 45 vI~VT---GT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
+|+|+ |-.||||++..|+..|...| ++.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~Vl 32 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETL 32 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEE
Confidence 56665 66799999999999999999 874
No 37
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=84.70 E-value=0.86 Score=40.49 Aligned_cols=30 Identities=27% Similarity=0.488 Sum_probs=25.2
Q ss_pred cEEEEec---CCChhhHHHHHHHHHHhcCCcee
Q 015701 44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 44 ~vI~VTG---T~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
++|+|++ -.||||++..|+..|...|.++.
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~Vl 35 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVT 35 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEE
Confidence 5677765 46899999999999999998874
No 38
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=84.63 E-value=1.1 Score=41.68 Aligned_cols=33 Identities=24% Similarity=0.524 Sum_probs=27.7
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCceee
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
+..+|+|+|.+ |||||+..|+..|...|.++.+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVll 138 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLI 138 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 45699999775 7999999999999988877744
No 39
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=84.33 E-value=0.51 Score=43.00 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=21.8
Q ss_pred ecCCChhhHHHHHHHHHHhcCCcee
Q 015701 49 TGTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 49 TGT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
-|-.||||++..|+..|...|.++.
T Consensus 45 KGGvGKTT~a~nLA~~la~~G~rVl 69 (298)
T 2oze_A 45 KGGVGKSKLSTMFAYLTDKLNLKVL 69 (298)
T ss_dssp SSSSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCchHHHHHHHHHHHHHhCCCeEE
Confidence 3578999999999999999998773
No 40
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=84.20 E-value=1.6 Score=37.09 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=26.7
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCce
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~ 72 (402)
.+..+|+|+|.+ ||||++.+|...|...|..+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v 53 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISV 53 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeE
Confidence 356799999987 89999999999998766554
No 41
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=83.50 E-value=1.2 Score=40.90 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=27.2
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCceee
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
+..+|+|+|.+ |||||+..|+..|...|.++.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~l 137 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVL 137 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEE
Confidence 44689999976 7999999999999888877643
No 42
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=83.23 E-value=1.8 Score=40.64 Aligned_cols=33 Identities=33% Similarity=0.319 Sum_probs=29.2
Q ss_pred CCcEEEEecC---CChhhHHHHHHHHHHhcCCceee
Q 015701 42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 42 ~~~vI~VTGT---~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
+.+.|.|+|| .|||+|+..|.+.|++.|+++..
T Consensus 168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~ 203 (350)
T 2g0t_A 168 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGF 203 (350)
T ss_dssp CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEE
Confidence 4678999998 59999999999999999999743
No 43
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=83.18 E-value=1.3 Score=40.14 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=25.3
Q ss_pred CcEEEEe--cCCChhhHHHHHHHHHHhcCCcee
Q 015701 43 IKILAVT--GTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 43 ~~vI~VT--GT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
+++|+|+ |-.||||++.-|+..|...|.++.
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVl 34 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVM 34 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEE
Confidence 3556664 567999999999999999998874
No 44
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=82.96 E-value=1 Score=40.16 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=26.6
Q ss_pred CCCcEEEEecCC---ChhhHHHHHHHHHHhcCCcee
Q 015701 41 RSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 41 ~~~~vI~VTGT~---GKTTt~~ml~~iL~~~g~~~~ 73 (402)
+..++|+|++.+ ||||++..|+..|. .|.++.
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~Vl 59 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVL 59 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEE
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEE
Confidence 467899997665 79999999999999 898873
No 45
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=82.87 E-value=1.3 Score=41.52 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=28.9
Q ss_pred CCCcEEEEe---cCCChhhHHHHHHHHHHhcCCceee
Q 015701 41 RSIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 41 ~~~~vI~VT---GT~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
++.++|.|+ |-.||||++.-++..|...|.++.+
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLl 59 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVI 59 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEE
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEE
Confidence 467788887 6678999999999999999998854
No 46
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=81.65 E-value=1.5 Score=40.09 Aligned_cols=33 Identities=30% Similarity=0.397 Sum_probs=26.9
Q ss_pred CCCcEEEEec--CCChhhHHHHHHHHHHhcCCcee
Q 015701 41 RSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 41 ~~~~vI~VTG--T~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
+..++|+|+| -.||||++.-|+..|.+.|.++.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vl 73 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVL 73 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEE
Confidence 4667888874 46799999999999999998873
No 47
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=81.63 E-value=1.3 Score=41.84 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=27.8
Q ss_pred CCCcEEEEecC---CChhhHHHHHHHHHHhcCCcee
Q 015701 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 41 ~~~~vI~VTGT---~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
++.++|+|++. .||||++.-|+..|...|.++.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVl 176 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVF 176 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEE
Confidence 35789999864 5799999999999999998773
No 48
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=81.60 E-value=1.1 Score=40.90 Aligned_cols=30 Identities=33% Similarity=0.524 Sum_probs=23.9
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCc
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIE 71 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~ 71 (402)
+..+|+|||.. ||||++.+|+..|...|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~ 35 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVK 35 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCC
Confidence 45789999985 8999999999988765543
No 49
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=80.15 E-value=0.93 Score=42.74 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=26.6
Q ss_pred CcEEEEecC---CChhhHHHHHHHHHHhcCCceee
Q 015701 43 IKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 43 ~~vI~VTGT---~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
+++|+|++. .||||++.-|+..|...|.+|.+
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLl 35 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLY 35 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEE
Confidence 467777754 68999999999999999999843
No 50
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=80.10 E-value=1.7 Score=40.23 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=26.6
Q ss_pred cEEEEe---cCCChhhHHHHHHHHHHhcCCceee
Q 015701 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 44 ~vI~VT---GT~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
++|.|+ |-.||||++.-++..|.+.|.++.+
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLl 47 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLV 47 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEE
Confidence 677777 7778999999999999999998843
No 51
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=80.03 E-value=1.6 Score=36.58 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=24.4
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCcee
Q 015701 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 45 vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
.|+++|. .||||.+.+|+..|...|+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 5888995 6899999999999998888764
No 52
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=79.75 E-value=2.4 Score=35.40 Aligned_cols=32 Identities=28% Similarity=0.265 Sum_probs=27.3
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCcee
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
.+++++|+|. .||||+...|...|...|.++.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~ 38 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPG 38 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccccCCcee
Confidence 4689999998 4899999999988988888774
No 53
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=79.72 E-value=1.1 Score=42.77 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=20.4
Q ss_pred CCCcEEEEe---cCCChhhHHHHHHHHHH------hcCCce
Q 015701 41 RSIKILAVT---GTNGKSTVVTFVGQMLN------HLGIEA 72 (402)
Q Consensus 41 ~~~~vI~VT---GT~GKTTt~~ml~~iL~------~~g~~~ 72 (402)
...++|+|+ |-.|||||+..|+..|. ..|.++
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rV 149 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRI 149 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCE
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeE
Confidence 467899999 67799999999999998 456655
No 54
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=79.44 E-value=1.9 Score=41.02 Aligned_cols=27 Identities=7% Similarity=0.187 Sum_probs=23.1
Q ss_pred CCCcEEEEe---cCCChhhHHHHHHHHHHh
Q 015701 41 RSIKILAVT---GTNGKSTVVTFVGQMLNH 67 (402)
Q Consensus 41 ~~~~vI~VT---GT~GKTTt~~ml~~iL~~ 67 (402)
...++|+|+ |-.||||++..|+..|..
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~ 135 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRA 135 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 357899998 557899999999999985
No 55
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=78.81 E-value=2.7 Score=37.51 Aligned_cols=33 Identities=33% Similarity=0.543 Sum_probs=30.4
Q ss_pred CCCcEEEEec----CCChhhHHHHHHHHHHhcCCcee
Q 015701 41 RSIKILAVTG----TNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 41 ~~~~vI~VTG----T~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
..+|.|.||| +-||+-|++-|..+|+.+|+++.
T Consensus 21 ~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt 57 (295)
T 2vo1_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVT 57 (295)
T ss_dssp CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccceEEEEcCCcccccccHHHHHHHHHHHHHCCCcce
Confidence 4789999999 68999999999999999999983
No 56
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=78.67 E-value=1.8 Score=40.24 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=25.9
Q ss_pred CcEEEEe---cCCChhhHHHHHHHHHHhcCCceee
Q 015701 43 IKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 43 ~~vI~VT---GT~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
.++|.|+ |-.||||++..|+..|.+.|.++.+
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVll 52 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLL 52 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEE
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 3445555 6689999999999999999999854
No 57
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=78.66 E-value=2.1 Score=40.01 Aligned_cols=108 Identities=11% Similarity=0.016 Sum_probs=61.8
Q ss_pred CCcEEEEecC---CChhhHHHHHHHHHHhcCCceeeecc---------Cchhhhhhhhhhc------cCCCCCCCccEEE
Q 015701 42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVGGN---------LGNPLSEAAFHCI------ALPSSKPKFQVAV 103 (402)
Q Consensus 42 ~~~vI~VTGT---~GKTTt~~ml~~iL~~~g~~~~~~g~---------~g~~~~~~~~~~~------~~~~~~~~~~~~V 103 (402)
+.+.|.|+|| .|||+|+..|.+.|++.|+++...++ .|.+.......+. ..+....++|+.+
T Consensus 151 ~~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgqtg~~~~~~gi~~Dav~~df~aG~ve~~~~~~~~~~d~vl 230 (349)
T 2obn_A 151 PCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQTGVMLEGDGVALDAVRVDFAAGAVEQMVMRYGKNYDILH 230 (349)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSHHHHHHHSCSCCGGGSBHHHHHHHHHHHHHHHTTTCSEEE
T ss_pred cceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccchhhhhhcCCcchhHHHHHHHhhhHHHHHHHhccCCCEEE
Confidence 3678999998 59999999999999999999743222 1222221110000 0000133578899
Q ss_pred EEeCcc---cccCCC--c--ccccc-EEEEecCCcchhcCC-----CCHHHHHHHHHHh
Q 015701 104 VEVSSY---QMEIPN--K--YFCPT-VSVVLNLTPDHLERH-----KTMKNYALTKCHL 149 (402)
Q Consensus 104 ~E~~~~---~l~~~~--~--~~~p~-i~iiTni~~dH~~~~-----~t~e~i~~~k~~i 149 (402)
+|--++ .+.... . -.+|+ +.+....+.-|++.| +++++....-..+
T Consensus 231 VEGqGgl~~P~~~~t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l 289 (349)
T 2obn_A 231 IEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETV 289 (349)
T ss_dssp ECCCCCTTSTTCCTHHHHHHHHCCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHH
T ss_pred EeCCCcccCcChHhHHHHHHHcCCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHH
Confidence 996643 221000 1 13677 666667677666443 3666555554443
No 58
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=77.81 E-value=2.6 Score=38.54 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=26.1
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHh-cCCceee
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLNH-LGIEAFV 74 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~~-~g~~~~~ 74 (402)
+..+|+++|.+ |||||+..|+..+.. .|.++.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~l 139 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAF 139 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 45677777765 799999999999985 7877743
No 59
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=77.68 E-value=2.3 Score=36.09 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=26.5
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
+..+|.|+|. .||||++.+|+.-|...|+.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 4568999996 789999999999998888765
No 60
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=77.14 E-value=0.5 Score=42.83 Aligned_cols=64 Identities=13% Similarity=0.059 Sum_probs=41.3
Q ss_pred eeeeeccccC-CCcHHHHHHHhc---CCce--eeHHHHHHhhCC---CCCc--EEEEecCCChhhHH-HHHHHHHHh
Q 015701 3 MLWLFLLEFQ-LKATGLACLLQS---GKRV--MSELDFAAQVIP---RSIK--ILAVTGTNGKSTVV-TFVGQMLNH 67 (402)
Q Consensus 3 ~~~~~~~~~~-~~~p~~~~a~~~---~~~~--l~~~~~~~~~~~---~~~~--vI~VTGT~GKTTt~-~ml~~iL~~ 67 (402)
.++|.++.-+ ...+....|++. ++++ ...++...-.++ .+.+ +|+|| |+|||++. ..|..-++.
T Consensus 108 dlViaat~d~~~n~~I~~~Ar~~f~~~i~VNvvd~pel~~f~~Pa~~~~g~~l~IaIS-T~Gksp~lA~~ir~~ie~ 183 (274)
T 1kyq_A 108 YIIMTCIPDHPESARIYHLCKERFGKQQLVNVADKPDLCDFYFGANLEIGDRLQILIS-TNGLSPRFGALVRDEIRN 183 (274)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHHHCTTSEEEETTCGGGBSEECCEEEEETTTEEEEEE-ESSSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCChHHHHHHHHHHHHhcCCCcEEEECCCcccCeeEeeeEEEeCCCEEEEEE-CCCCCcHHHHHHHHHHHH
Confidence 4556665554 344456788888 9988 777777653322 2345 99999 99998764 455544443
No 61
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=77.07 E-value=2 Score=35.66 Aligned_cols=29 Identities=48% Similarity=0.601 Sum_probs=24.6
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
++|.|+|. .||||.+..|+.-|...|+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~ 32 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINN 32 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceE
Confidence 56888886 789999999999998877765
No 62
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=76.63 E-value=3.7 Score=34.99 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=25.4
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhcCC
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGI 70 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~ 70 (402)
++..+|+|.|-+ ||||+..+|..++...|.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~ 51 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGL 51 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 456799999987 899999999999986553
No 63
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=75.93 E-value=2.7 Score=40.70 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=27.6
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHHhcCCceee
Q 015701 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 43 ~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
..+|.++|.+ |||||+..|+..|...|.++.+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 5689999865 5999999999999999988854
No 64
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=75.88 E-value=2.5 Score=35.83 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=26.3
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
+..+|.|+|. .||||.+.+|+.-|...++.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 3468999997 689999999999998877765
No 65
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=75.48 E-value=4.2 Score=34.35 Aligned_cols=31 Identities=35% Similarity=0.377 Sum_probs=26.4
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHHHhcCCc
Q 015701 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIE 71 (402)
Q Consensus 41 ~~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~ 71 (402)
.+..+|+|+|- .||||+..+|+..|...|..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~ 55 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKL 55 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCce
Confidence 46789999997 57999999999999876755
No 66
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=75.48 E-value=2.8 Score=34.91 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=24.1
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCcee
Q 015701 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 45 vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
+|+++|. .||||.+.+|+.-|...|+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i 32 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVS 32 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 5788886 5899999999999988787653
No 67
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=74.06 E-value=3.4 Score=34.11 Aligned_cols=31 Identities=29% Similarity=0.277 Sum_probs=25.5
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCce
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~ 72 (402)
+..+|+++|.. ||||++.+|+..|...|+.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~ 36 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPC 36 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcE
Confidence 45688999985 79999999999998777654
No 68
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=73.89 E-value=2.2 Score=37.89 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=24.2
Q ss_pred cEEEE--ecCCChhhHHHHHHHHHHhcCCcee
Q 015701 44 KILAV--TGTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 44 ~vI~V--TGT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
++|+| -|-.||||++..|+..|...|.++.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vl 33 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIM 33 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEE
Confidence 44555 4567899999999999999998873
No 69
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=73.87 E-value=3.8 Score=37.52 Aligned_cols=33 Identities=21% Similarity=0.424 Sum_probs=26.2
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCceee
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
+..++++.|-| ||||+...|+..+...+-++..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l 133 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM 133 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 34588888877 7999999999999876655543
No 70
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=73.11 E-value=2.6 Score=37.03 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=21.8
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+..+|+|+|.+ ||||++.+|+..|
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 355799999987 7999999999887
No 71
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=72.82 E-value=2.6 Score=34.40 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=19.9
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHHH
Q 015701 41 RSIKILAVTGT--NGKSTVVTFVGQMLN 66 (402)
Q Consensus 41 ~~~~vI~VTGT--~GKTTt~~ml~~iL~ 66 (402)
..+.+|+++|. .||||++.+|+.-|.
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 36789999997 689999999997763
No 72
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=72.63 E-value=4.6 Score=35.83 Aligned_cols=33 Identities=33% Similarity=0.543 Sum_probs=29.8
Q ss_pred CCCcEEEEecC----CChhhHHHHHHHHHHhcCCcee
Q 015701 41 RSIKILAVTGT----NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 41 ~~~~vI~VTGT----~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
+.++.|.|||- -||+-|++-|..+|+..|+++.
T Consensus 21 ~~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt 57 (294)
T 2c5m_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVT 57 (294)
T ss_dssp CCCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEE
T ss_pred eceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeE
Confidence 57899999985 4999999999999999999983
No 73
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=72.54 E-value=3.4 Score=34.34 Aligned_cols=31 Identities=32% Similarity=0.504 Sum_probs=25.8
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHHhcCCcee
Q 015701 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 43 ~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~ 73 (402)
+++++|+|.+ ||||+..+|..++...|++.+
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G 34 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVA 34 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhcCCceE
Confidence 3689999975 799999999999998887763
No 74
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=72.44 E-value=2.9 Score=39.21 Aligned_cols=32 Identities=13% Similarity=0.126 Sum_probs=25.7
Q ss_pred CcEEEEe---cCCChhhHHHHHHHHHH--hcCCceee
Q 015701 43 IKILAVT---GTNGKSTVVTFVGQMLN--HLGIEAFV 74 (402)
Q Consensus 43 ~~vI~VT---GT~GKTTt~~ml~~iL~--~~g~~~~~ 74 (402)
.++|.|+ |-.||||++.-|+..|. +.|.++.+
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLL 53 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLL 53 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEE
Confidence 3445555 67899999999999999 89998843
No 75
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=72.14 E-value=2.6 Score=35.85 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=21.5
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
+..+|+|+|.+ ||||++.+|..++.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 55789999986 59999999998885
No 76
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=71.24 E-value=3.5 Score=37.53 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=23.8
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHHHhc
Q 015701 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHL 68 (402)
Q Consensus 41 ~~~~vI~VTGT--~GKTTt~~ml~~iL~~~ 68 (402)
.+..+|+|+|. .||||++.+|...|...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 45679999996 68999999999999864
No 77
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=70.06 E-value=5 Score=37.73 Aligned_cols=33 Identities=21% Similarity=0.424 Sum_probs=26.3
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCceee
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
+..+|++.|-| |||||...|+..+...+.++.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l 190 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM 190 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEE
Confidence 34588888877 7999999999999876656544
No 78
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=70.00 E-value=5.1 Score=37.15 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=26.8
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCceee
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
+..+|++.|-| |||||...|+..+...+.++..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l 162 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVI 162 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEE
Confidence 45688888876 6999999999999887766644
No 79
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=69.49 E-value=5.4 Score=33.07 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=26.5
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
+..+|.++|. .||||.+..|+..|...|..+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 4568999997 679999999999999887765
No 80
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=69.49 E-value=4.6 Score=39.14 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=27.2
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHHhcCCceee
Q 015701 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 43 ~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
.++|.++|.. |||||+.-|+..|...|.++.+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 4688888865 6999999999999999998743
No 81
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=69.31 E-value=3.6 Score=38.25 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=22.6
Q ss_pred cCCChhhHHHHHHHHHHhcCCceee
Q 015701 50 GTNGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 50 GT~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
|-.||||++.-++..|.+.|.++.+
T Consensus 25 GGvGKTt~a~~lA~~la~~g~~vll 49 (334)
T 3iqw_A 25 GGVGKTTTSCSLAIQLAKVRRSVLL 49 (334)
T ss_dssp TTSSHHHHHHHHHHHHTTSSSCEEE
T ss_pred CCccHHHHHHHHHHHHHhCCCcEEE
Confidence 7788999999999999999999854
No 82
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=69.21 E-value=2.6 Score=35.66 Aligned_cols=25 Identities=40% Similarity=0.538 Sum_probs=20.0
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHHhcCCce
Q 015701 44 KILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 44 ~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~ 72 (402)
.+|+|+|.+ ||||++.+|+. | |..+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~---g~~~ 28 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L---GAYV 28 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T---TCEE
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C---CCEE
Confidence 579999975 89999999987 5 5554
No 83
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=68.66 E-value=3.4 Score=35.02 Aligned_cols=28 Identities=32% Similarity=0.487 Sum_probs=22.3
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
.-.+|++||. .||||++.+|+..| |..+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l---g~~v 40 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY---GAHV 40 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH---CCEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc---CCEE
Confidence 4468999997 58999999999864 5554
No 84
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=68.59 E-value=3.7 Score=33.34 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=18.7
Q ss_pred cEEEEecC--CChhhHHHHHHHHH
Q 015701 44 KILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL 65 (402)
++|.|+|. .||||++.+|+.-|
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899997 57999999998766
No 85
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=68.16 E-value=5.6 Score=36.15 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=26.8
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCceee
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
+..+|+|+|- .||||++..|+..+...|.++..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l 131 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL 131 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 3468888885 57999999999999988877644
No 86
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=67.90 E-value=6.5 Score=35.97 Aligned_cols=33 Identities=27% Similarity=0.537 Sum_probs=25.9
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCceee
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
+..+|+|.|-+ ||||+...|+.++...+.++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l 135 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMF 135 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 34688888876 6999999999999876656543
No 87
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=67.71 E-value=6 Score=38.90 Aligned_cols=33 Identities=18% Similarity=0.384 Sum_probs=26.6
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCceee
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
...+|+|.|-| ||||+...|+.++...+.++.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l 326 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML 326 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEE
Confidence 44588888887 6999999999999877666644
No 88
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=67.22 E-value=6.1 Score=38.16 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=26.4
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhc-CCcee
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQMLNHL-GIEAF 73 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL~~~-g~~~~ 73 (402)
+.++|.|+|. .|||||+.-|+..|... |.++.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVl 133 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVL 133 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEE
Confidence 3457877764 68999999999999998 98874
No 89
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=67.15 E-value=2.1 Score=37.34 Aligned_cols=24 Identities=21% Similarity=0.117 Sum_probs=20.7
Q ss_pred ecCCChhhHHHHHHHHHHhcCCce
Q 015701 49 TGTNGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 49 TGT~GKTTt~~ml~~iL~~~g~~~ 72 (402)
.|-.||||++.-|+..|.+.|.++
T Consensus 8 kGGvGKTt~a~~LA~~la~~g~~V 31 (254)
T 3kjh_A 8 KGGVGKTTVAAGLIKIMASDYDKI 31 (254)
T ss_dssp SSSHHHHHHHHHHHHHHTTTCSCE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeE
Confidence 456679999999999999888776
No 90
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=66.97 E-value=4 Score=34.39 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.3
Q ss_pred cEEEEecC--CChhhHHHHHHHHH
Q 015701 44 KILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL 65 (402)
++|+|||. .||||++.+|+..|
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 38999997 58999999998876
No 91
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=66.66 E-value=4.1 Score=34.40 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=20.9
Q ss_pred EEEEecCCC--hhhHHHHHHHHHHhcC
Q 015701 45 ILAVTGTNG--KSTVVTFVGQMLNHLG 69 (402)
Q Consensus 45 vI~VTGT~G--KTTt~~ml~~iL~~~g 69 (402)
+++++|-|| |||+..+|...+...|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 577777765 9999999999998666
No 92
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=65.74 E-value=3.8 Score=36.16 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=20.9
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHH
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL~ 66 (402)
+..+|+|||. .||||++.+|+..|.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4568999997 489999999988764
No 93
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=65.65 E-value=4 Score=34.33 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=20.3
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
+..+|+++|.+ ||||+..+|...+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999987 7999999998775
No 94
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=65.15 E-value=5 Score=36.88 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=23.4
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHh
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~~ 67 (402)
.+..+|+|.|.+ ||||++.+|..+|..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 456799999987 799999999999874
No 95
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=63.89 E-value=4.2 Score=34.41 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=17.4
Q ss_pred cEEEEecCC--ChhhHHHHHHH
Q 015701 44 KILAVTGTN--GKSTVVTFVGQ 63 (402)
Q Consensus 44 ~vI~VTGT~--GKTTt~~ml~~ 63 (402)
.+|+++|.+ ||||++.+|+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 579999985 89999999986
No 96
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=63.80 E-value=5 Score=36.67 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=22.0
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
.+..+|+|+|.+ ||||++.+|..++.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 355799999986 59999999998885
No 97
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=63.76 E-value=10 Score=32.16 Aligned_cols=32 Identities=25% Similarity=0.235 Sum_probs=26.3
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHHH-hcCCce
Q 015701 41 RSIKILAVTGT--NGKSTVVTFVGQMLN-HLGIEA 72 (402)
Q Consensus 41 ~~~~vI~VTGT--~GKTTt~~ml~~iL~-~~g~~~ 72 (402)
....+|.++|. .||||.+.+|+..|. ..|..+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~ 57 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHA 57 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcE
Confidence 45678999986 689999999999998 677554
No 98
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=63.43 E-value=7.9 Score=36.15 Aligned_cols=33 Identities=27% Similarity=0.293 Sum_probs=26.1
Q ss_pred CCcEEEEe--cCCChhhHHHHHHHHHH--hcCCceee
Q 015701 42 SIKILAVT--GTNGKSTVVTFVGQMLN--HLGIEAFV 74 (402)
Q Consensus 42 ~~~vI~VT--GT~GKTTt~~ml~~iL~--~~g~~~~~ 74 (402)
..+++.++ |-.||||++..++..|. ..|.++.+
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vll 53 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLL 53 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEE
Confidence 34555554 66789999999999999 89998854
No 99
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=61.97 E-value=6.1 Score=34.07 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=22.5
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 41 ~~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
..+..||+||. .||||++.+++. .|..+
T Consensus 7 ~~~~~iglTGgigsGKStv~~~l~~----~g~~v 36 (210)
T 4i1u_A 7 HHMYAIGLTGGIGSGKTTVADLFAA----RGASL 36 (210)
T ss_dssp CSCCEEEEECCTTSCHHHHHHHHHH----TTCEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHH----CCCcE
Confidence 46789999997 679999998875 47655
No 100
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=61.72 E-value=6.3 Score=36.40 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.2
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHHh
Q 015701 43 IKILAVTGTN--GKSTVVTFVGQMLNH 67 (402)
Q Consensus 43 ~~vI~VTGT~--GKTTt~~ml~~iL~~ 67 (402)
..+|+|+|.+ ||||++.+|..+|..
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3499999975 699999999998863
No 101
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=61.54 E-value=6.5 Score=33.61 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=19.2
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHH
Q 015701 43 IKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 43 ~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
..+|+++|.+ ||||++.+|+..|
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999985 5999999998765
No 102
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=60.10 E-value=7.1 Score=32.86 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=20.7
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
+..+|+++|-+ ||||++.+|+..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45799999976 6999999999877
No 103
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=59.76 E-value=5.7 Score=32.25 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=18.6
Q ss_pred cEEEEecC--CChhhHHHHHHHHH
Q 015701 44 KILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL 65 (402)
++|.++|. .||||++.+|+.-|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 46888886 69999999999876
No 104
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=59.43 E-value=10 Score=37.03 Aligned_cols=60 Identities=22% Similarity=0.230 Sum_probs=42.2
Q ss_pred cHHHHHHHhcCCce--e-------e--HHHHHHhhC-CCCCcEEEEecC------CChhhHHHHHHHHHHhcCCceee
Q 015701 15 ATGLACLLQSGKRV--M-------S--ELDFAAQVI-PRSIKILAVTGT------NGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 15 ~p~~~~a~~~~~~~--l-------~--~~~~~~~~~-~~~~~vI~VTGT------~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
-|.-.-|.+.|++- + . .+..+.++. +++.++|.||.+ -|||||+.=|+..|.+.|.++.+
T Consensus 17 ~pI~~ia~~~gi~~~~lE~YG~~kAKv~~~~l~~~~~~~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLL 94 (557)
T 3pzx_A 17 KPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMV 94 (557)
T ss_dssp CCHHHHHHHTTCCGGGEEEBSSSCEEECHHHHHHTTTSCCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCHHHHHHHcCCCHHHHHHhhCeeEEecHHHhhhhhccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEE
Confidence 45566667777752 1 1 133444432 246789999997 57999999999999999998743
No 105
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=59.05 E-value=8.9 Score=31.55 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=22.8
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCC
Q 015701 44 KILAVTGT--NGKSTVVTFVGQMLNHLGI 70 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL~~~g~ 70 (402)
.+|.|+|. .||||.+..|+.-|...|.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~ 32 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGV 32 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCc
Confidence 57888886 6899999999999987764
No 106
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=58.93 E-value=5.2 Score=34.57 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=15.9
Q ss_pred CCcEEEEecCC--ChhhHHHHHH-HHHH
Q 015701 42 SIKILAVTGTN--GKSTVVTFVG-QMLN 66 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~-~iL~ 66 (402)
+..+|+++|.+ ||||+..+|. ..+.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 45799999997 6999999998 7653
No 107
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=58.90 E-value=9.3 Score=34.74 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=26.3
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcCCceee
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
..+|+++|- .||||++..|+..+...|.++.+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l 131 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGL 131 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 458888875 57999999999999988888743
No 108
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=58.69 E-value=9.9 Score=37.46 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=26.0
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCcee
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
+.++|+|+|. .|||||+.-|+..|...|.++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVl 133 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTC 133 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 3458888886 5799999999999999898874
No 109
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=58.41 E-value=6.4 Score=32.87 Aligned_cols=29 Identities=31% Similarity=0.539 Sum_probs=22.5
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHHHhcCCcee
Q 015701 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 41 ~~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
.+..+|+|+|. .||||++.+|+.. |..+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~----g~~~i 36 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW----GYPVL 36 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT----TCCEE
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC----CCEEE
Confidence 45678999996 5899999998874 66553
No 110
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=58.24 E-value=4.5 Score=33.71 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=19.3
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHH
Q 015701 44 KILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 44 ~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
++++++|-| ||||+..+|...+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 468888876 59999999998875
No 111
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=58.02 E-value=11 Score=35.04 Aligned_cols=34 Identities=38% Similarity=0.459 Sum_probs=28.4
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCceee
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
.+.++|+++|.+ ||||+...|...+...|.++..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 467899999986 7999999999999888877643
No 112
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=57.79 E-value=7.6 Score=32.30 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.3
Q ss_pred EEEEecCCC--hhhHHHHHHHHHH
Q 015701 45 ILAVTGTNG--KSTVVTFVGQMLN 66 (402)
Q Consensus 45 vI~VTGT~G--KTTt~~ml~~iL~ 66 (402)
.++++|-|| |||+..+|..++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999987 9999999999884
No 113
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=57.72 E-value=10 Score=33.50 Aligned_cols=32 Identities=28% Similarity=0.448 Sum_probs=25.7
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCcee
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
++++|.++|. .||||.+..|+.-|...|+.+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i 36 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVI 36 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 4567888875 5899999999999988887653
No 114
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=56.62 E-value=8.5 Score=32.30 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=22.4
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcC
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQMLNHLG 69 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL~~~g 69 (402)
..+|.|+|. .||||.+..|+.-|...|
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 357899996 789999999999887655
No 115
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=56.59 E-value=5.9 Score=33.24 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=20.1
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
+..+|+++|.+ ||||++.+|...+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999986 7999999998766
No 116
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=55.98 E-value=11 Score=36.14 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=26.2
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcCCceee
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
..+|+++|- .||||++..|+..|...|.++..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vll 131 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL 131 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 457877775 57999999999999988888743
No 117
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=55.88 E-value=6 Score=32.15 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=19.1
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHH
Q 015701 44 KILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 44 ~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
.+|+++|.+ ||||++.+|+..|.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999985 79999999988763
No 118
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=55.46 E-value=7 Score=35.96 Aligned_cols=29 Identities=21% Similarity=0.595 Sum_probs=25.4
Q ss_pred CCcEEEE----ecCCChhhHHHHHHHHHHhcCC
Q 015701 42 SIKILAV----TGTNGKSTVVTFVGQMLNHLGI 70 (402)
Q Consensus 42 ~~~vI~V----TGT~GKTTt~~ml~~iL~~~g~ 70 (402)
+.|||.| .|-.|||-++.+|...|++.+.
T Consensus 35 ~vPVI~VGNitvGGTGKTP~vi~L~~~L~~~~~ 67 (315)
T 4ehx_A 35 PVPVISVGNLSVGGSGKTSFVMYLADLLKDKRV 67 (315)
T ss_dssp SSCEEEEEESBSSCCSHHHHHHHHHHHTTTSCE
T ss_pred CCCEEEECCEEeCCCChHHHHHHHHHHHhhcCc
Confidence 6789999 7999999999999999976653
No 119
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=55.24 E-value=7.3 Score=32.87 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=20.1
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT--~GKTTt~~ml~~iL 65 (402)
....+|+|+|. .||||++.+|+..+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35679999994 67999999887654
No 120
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=55.10 E-value=18 Score=33.58 Aligned_cols=34 Identities=29% Similarity=0.358 Sum_probs=28.2
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHHHhcCCceee
Q 015701 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 41 ~~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
.+.++|+|+|. .||||++.-|...|...|.++..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~v 112 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAV 112 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEE
Confidence 45679999986 57999999999999888988743
No 121
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=55.03 E-value=13 Score=37.29 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=25.8
Q ss_pred CCcEEEEec--CCChhhHHHHHHHHHHhcCCcee
Q 015701 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 42 ~~~vI~VTG--T~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
..+++.++| -.||||++..++..|.+.|.++.
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVL 40 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVL 40 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEE
Confidence 345565554 58999999999999999999874
No 122
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=54.74 E-value=8.8 Score=30.93 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=17.8
Q ss_pred EEEEecC--CChhhHHHHHHHHH
Q 015701 45 ILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 45 vI~VTGT--~GKTTt~~ml~~iL 65 (402)
.|.++|. .||||.+.+|+.-|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 5788886 69999999999876
No 123
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=54.31 E-value=10 Score=31.21 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=19.3
Q ss_pred CcEEEEecC--CChhhHHHHHHHHH
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL 65 (402)
.++|.++|. .||||++.+|+.-|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999998 58999999998766
No 124
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=54.27 E-value=11 Score=30.74 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=20.3
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHH
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL 65 (402)
+..+|+++|. .||||++.+|+..+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4578999998 57999999998876
No 125
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=53.93 E-value=7.5 Score=32.02 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=18.4
Q ss_pred cEEEEecC--CChhhHHHHHHHHH
Q 015701 44 KILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL 65 (402)
++|.++|. .||||++.+|+.-|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 45888886 78999999998866
No 126
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=53.39 E-value=10 Score=31.33 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=19.3
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHH
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQM 64 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~i 64 (402)
+.+.|.+||.. ||||++.+|+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999985 699999999876
No 127
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=53.31 E-value=7.3 Score=33.11 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=21.2
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
.+.++|+++|.+ ||||++.+|...+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456799999987 59999999887653
No 128
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=53.11 E-value=10 Score=31.37 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=19.8
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHH
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL 65 (402)
+.++|.++|. .||||++.+|+.-|
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5568888886 58999999998766
No 129
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=53.10 E-value=14 Score=32.77 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=23.6
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhc
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~~~ 68 (402)
.+..+++|+|.+ ||||+..+|...+...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 466799999987 8999999999988653
No 130
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=53.01 E-value=23 Score=32.71 Aligned_cols=34 Identities=29% Similarity=0.424 Sum_probs=27.8
Q ss_pred CCCcEEEEecCCC--hhhHHHHHHHHHHhcCCceee
Q 015701 41 RSIKILAVTGTNG--KSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 41 ~~~~vI~VTGT~G--KTTt~~ml~~iL~~~g~~~~~ 74 (402)
.+..+++|+|.+| |||+..+|...+...+.++..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i 88 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAV 88 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEE
Confidence 4678999999986 999999999998876656543
No 131
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=52.38 E-value=8.7 Score=32.52 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.2
Q ss_pred CChhhHHHHHHHHHHhcCCcee
Q 015701 52 NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 52 ~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
.||||-+.+|+.-|++.|..+.
T Consensus 11 sGKsTq~~~L~~~L~~~g~~v~ 32 (197)
T 3hjn_A 11 SGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCHHHHHHHHHHHHHHCCCcEE
Confidence 6999999999999999998873
No 132
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=51.14 E-value=12 Score=32.25 Aligned_cols=31 Identities=26% Similarity=0.389 Sum_probs=23.3
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCceee
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
.+..+|+|+|.+ ||||++.+|+..| |+.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l---g~~~~d 46 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF---GFTYLD 46 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH---CCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc---CCceec
Confidence 356789999975 7999999998765 555433
No 133
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=50.40 E-value=22 Score=29.92 Aligned_cols=34 Identities=15% Similarity=-0.014 Sum_probs=22.2
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHHHhcCCceee
Q 015701 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 41 ~~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
.+.+++.++|+ .||||...-+..=+...|.++.+
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v 41 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQV 41 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEE
Confidence 35679999999 55655555444445557888743
No 134
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=50.03 E-value=11 Score=33.80 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=21.1
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCce
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~ 72 (402)
...+|+|||.. ||||++.+|+. .|+.+
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~----lg~~~ 102 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN----LGAYI 102 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH----HTCEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH----CCCcE
Confidence 45689999985 89999999984 36554
No 135
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=50.02 E-value=13 Score=31.12 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=20.2
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
+.++|.++|.. ||||++..|+..|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 56788888875 7999999999877
No 136
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=49.15 E-value=12 Score=31.43 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.2
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
..++|.++|-. ||||++..|+..|
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999975 6999999998877
No 137
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=48.80 E-value=18 Score=31.03 Aligned_cols=30 Identities=33% Similarity=0.547 Sum_probs=24.7
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHHhcCC-ce
Q 015701 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGI-EA 72 (402)
Q Consensus 43 ~~vI~VTGT~--GKTTt~~ml~~iL~~~g~-~~ 72 (402)
...|.+.|.. ||||.+..|..-|...|+ .+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v 35 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM 35 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc
Confidence 3577788865 599999999999999997 44
No 138
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=48.78 E-value=20 Score=30.69 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=26.4
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHHhcCCcee
Q 015701 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 43 ~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~ 73 (402)
...|.+.|.. ||||.+..|..-|...|+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~ 38 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQ 38 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcc
Confidence 4678888865 799999999999999998763
No 139
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=48.56 E-value=12 Score=36.08 Aligned_cols=31 Identities=16% Similarity=0.445 Sum_probs=25.4
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCceee
Q 015701 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
.+|+|+|- .||||++.-|+..|...|.++.+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVll 132 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPAL 132 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 47777764 58999999999999988888743
No 140
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=47.77 E-value=13 Score=31.56 Aligned_cols=26 Identities=46% Similarity=0.565 Sum_probs=20.4
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHHhcCCce
Q 015701 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 43 ~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~ 72 (402)
..+|+|+|.. ||||++.+|+. .|..+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~----lg~~~ 31 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD----LGINV 31 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH----TTCEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHH----cCCEE
Confidence 4689999974 89999999986 36544
No 141
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=47.01 E-value=8.9 Score=32.78 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=16.6
Q ss_pred cEEEEecC--CChhhHHHHHHHHHH
Q 015701 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL~ 66 (402)
..|.|.|. .||||.+..|+.-|.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34555554 389999999998774
No 142
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=46.61 E-value=9.4 Score=31.23 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=16.6
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHH
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL 65 (402)
+..+|.++|. .||||.+.+|+.-|
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468999997 68999999998655
No 143
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=46.18 E-value=15 Score=31.82 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=25.8
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCcee
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
....|.+.|- .||||.+.+|+..|.. |..+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 5678999997 5699999999999987 76653
No 144
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=45.96 E-value=13 Score=31.40 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=21.9
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
.+..+++|.|-| ||||+..+|..++.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 467899999987 79999999998874
No 145
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=45.83 E-value=24 Score=29.74 Aligned_cols=31 Identities=19% Similarity=0.034 Sum_probs=23.8
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCce
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~ 72 (402)
+..+++|+|.+ ||||++..+...+...+.++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v 54 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPC 54 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 55799999985 59999999986665555454
No 146
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=45.71 E-value=12 Score=31.40 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=19.0
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 43 IKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 43 ~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
.++++|.|-+ ||||+..+|...+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4578888876 79999999988764
No 147
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=45.62 E-value=16 Score=30.47 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=19.9
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHH
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL 65 (402)
+...|.++|. .||||.+.+|+.-|
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468899986 69999999998776
No 148
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=44.76 E-value=14 Score=32.35 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=20.5
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+..+|+|+|-+ ||||+..+|+.-|
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 356799999976 6999999998665
No 149
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=44.23 E-value=20 Score=29.90 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=19.2
Q ss_pred CcEEEEecC--CChhhHHHHHHHHH
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL 65 (402)
..+|.++|. .||||.+.+|+.-|
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 348899987 58999999999876
No 150
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=43.98 E-value=18 Score=29.62 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=18.8
Q ss_pred CcEEEEecC--CChhhHHHHHHHHH
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL 65 (402)
.+.|.++|- .||||++..|+.-|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467888884 68999999998776
No 151
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=43.72 E-value=23 Score=32.98 Aligned_cols=31 Identities=29% Similarity=0.292 Sum_probs=24.1
Q ss_pred CCcEEEEecCCC--hhhHHHHHHHHHHhc-CCce
Q 015701 42 SIKILAVTGTNG--KSTVVTFVGQMLNHL-GIEA 72 (402)
Q Consensus 42 ~~~vI~VTGT~G--KTTt~~ml~~iL~~~-g~~~ 72 (402)
+..+|+|+|.+| |||+...|...+... +..+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i 155 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHI 155 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEE
Confidence 445999999876 999999998888764 4343
No 152
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=43.53 E-value=28 Score=30.06 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=22.7
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHHHhcCCcee
Q 015701 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 41 ~~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
.+..++.+||. .||||...-+..-+...|.++.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVl 44 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYL 44 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence 35679999999 5666666555555666787764
No 153
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=43.42 E-value=14 Score=32.27 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=23.1
Q ss_pred CCcEEEEec--CCChhhHHHHHHHHHHhcCCce
Q 015701 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 42 ~~~vI~VTG--T~GKTTt~~ml~~iL~~~g~~~ 72 (402)
+..++.++| -.||||++.-|+..|. .|.++
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v 44 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKV 44 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeE
Confidence 345555554 6889999999999998 88766
No 154
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=43.38 E-value=19 Score=30.61 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=19.5
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT--~GKTTt~~ml~~iL 65 (402)
++...|.++|. .||||.+.+|+.-|
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34567888886 58999999999876
No 155
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=43.29 E-value=16 Score=30.08 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=20.1
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
..++|+|+|-+ ||||+..+|...+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45789999976 69999999887653
No 156
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=43.26 E-value=16 Score=30.56 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=19.9
Q ss_pred CCCcEEEEecC--CChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT--~GKTTt~~ml~~iL 65 (402)
.++.+|+|+|. .||||.+.+|+.-|
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999997 47999999888654
No 157
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=42.82 E-value=28 Score=30.33 Aligned_cols=29 Identities=34% Similarity=0.583 Sum_probs=25.3
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHHHhcCCc
Q 015701 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIE 71 (402)
Q Consensus 43 ~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~ 71 (402)
...|.+.|-. ||||.+..|..-|...|+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4688888864 7999999999999999887
No 158
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=42.80 E-value=22 Score=30.75 Aligned_cols=33 Identities=18% Similarity=0.419 Sum_probs=27.5
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHh-cCCcee
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH-LGIEAF 73 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~~-~g~~~~ 73 (402)
.+...|.+.|.. ||||.+..|+.-|.. .|+.+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~ 54 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNV 54 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceee
Confidence 356789999965 699999999999998 887753
No 159
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=42.74 E-value=29 Score=32.14 Aligned_cols=33 Identities=30% Similarity=0.463 Sum_probs=27.0
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCceee
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
+.++|+++|.. ||||+...|...+...+.++..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V 107 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSV 107 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 36899999986 6999999999888877766643
No 160
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=42.41 E-value=11 Score=35.60 Aligned_cols=28 Identities=11% Similarity=0.262 Sum_probs=23.5
Q ss_pred cCCChhhHHHHHHHHHHhcCCceeeecc
Q 015701 50 GTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (402)
Q Consensus 50 GT~GKTTt~~ml~~iL~~~g~~~~~~g~ 77 (402)
|-.||||++..++..|.+.|.++.+...
T Consensus 11 GG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 11 SGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 5568999999999999999999855444
No 161
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=42.38 E-value=28 Score=34.33 Aligned_cols=31 Identities=35% Similarity=0.505 Sum_probs=27.5
Q ss_pred CcEEEEecC----CChhhHHHHHHHHHHhcCCcee
Q 015701 43 IKILAVTGT----NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 43 ~~vI~VTGT----~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
.|-|.|||- -||+-|++-|..+|+..|+++.
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~ 37 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVT 37 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 478999984 5999999999999999999973
No 162
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=42.34 E-value=8 Score=32.63 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=21.3
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 45 vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
+|+|.|- .||||.+..|...|...|..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 4555554 589999999999998776654
No 163
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=42.15 E-value=19 Score=28.69 Aligned_cols=26 Identities=27% Similarity=0.535 Sum_probs=19.6
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHHhcCCcee
Q 015701 44 KILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 44 ~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~ 73 (402)
++|.|+|.. ||||++..| +..|+.+.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L----~~~g~~~i 29 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL----KERGAKVI 29 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH----HHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHH----HHCCCcEE
Confidence 478888864 799999988 55676653
No 164
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=42.13 E-value=20 Score=31.16 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=19.8
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
+..+|+|.|.+ ||||.+.+|+.-|
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999987 5999999988665
No 165
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=42.09 E-value=21 Score=31.04 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=23.8
Q ss_pred EEEEecCCChhhHHHHHHHHHHhcCCcee
Q 015701 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 45 vI~VTGT~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
++.=.|-.||||++.-+++-|...|+++.
T Consensus 10 ~~~~kgGvGKTt~a~~la~~l~~~G~~V~ 38 (228)
T 2r8r_A 10 FLGAAPGVGKTYAMLQAAHAQLRQGVRVM 38 (228)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCCCCEE
Confidence 34456778999999999999999998873
No 166
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=41.78 E-value=18 Score=38.11 Aligned_cols=31 Identities=13% Similarity=0.013 Sum_probs=27.8
Q ss_pred CCcEEEEecC---CChhhHHHHHHHHHHhc-----CCce
Q 015701 42 SIKILAVTGT---NGKSTVVTFVGQMLNHL-----GIEA 72 (402)
Q Consensus 42 ~~~vI~VTGT---~GKTTt~~ml~~iL~~~-----g~~~ 72 (402)
..+.|-|+|| .|||+++.-|..+|.+. |.++
T Consensus 33 ~~~~l~I~gt~s~vGKT~vt~gL~r~l~~~~~~~~G~~V 71 (831)
T 4a0g_A 33 NHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKL 71 (831)
T ss_dssp SSCEEEEEESSSSSCHHHHHHHHHHHHHSCSSCCTTCEE
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHHHHhcccccCCceE
Confidence 4678999999 69999999999999998 8876
No 167
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=41.51 E-value=17 Score=31.98 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=19.3
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
.+|++||. .||||++.+|..- .|+.+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~---~g~~~ 29 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSN---YSAVK 29 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---SCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHh---cCCeE
Confidence 58999996 5899998888643 46544
No 168
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=41.48 E-value=30 Score=31.63 Aligned_cols=27 Identities=0% Similarity=0.016 Sum_probs=21.9
Q ss_pred eeeeccccCCCcHHHHHHHhcCCceee
Q 015701 4 LWLFLLEFQLKATGLACLLQSGKRVMS 30 (402)
Q Consensus 4 ~~~~~~~~~~~~p~~~~a~~~~~~~l~ 30 (402)
.+|++-...+....+..|.+.++|+++
T Consensus 83 ~IIltrg~~~peelie~A~~~~IPVL~ 109 (314)
T 1ko7_A 83 AIIVTRDLEPPEELIEAAKEHETPLIT 109 (314)
T ss_dssp CEEECTTCCCCHHHHHHHHHTTCCEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHCCCeEEE
Confidence 467778887766778999999999885
No 169
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=41.00 E-value=20 Score=29.72 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=17.8
Q ss_pred EEEEecC--CChhhHHHHHHHHHH
Q 015701 45 ILAVTGT--NGKSTVVTFVGQMLN 66 (402)
Q Consensus 45 vI~VTGT--~GKTTt~~ml~~iL~ 66 (402)
.|+|+|. .||||.+..|+.-|.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 5777886 579999999998774
No 170
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=40.64 E-value=31 Score=28.53 Aligned_cols=30 Identities=20% Similarity=0.187 Sum_probs=19.0
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
.+++.+||. .||||...-+..-+...|.++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v 34 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKV 34 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 357889998 567776644444444567665
No 171
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=40.40 E-value=27 Score=33.44 Aligned_cols=26 Identities=46% Similarity=0.429 Sum_probs=20.9
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
++..+|+|+|-+ |||||...|...+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 456799999977 69999988877764
No 172
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=40.05 E-value=20 Score=29.58 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=19.6
Q ss_pred CcEEEEecC--CChhhHHHHHHHHHH
Q 015701 43 IKILAVTGT--NGKSTVVTFVGQMLN 66 (402)
Q Consensus 43 ~~vI~VTGT--~GKTTt~~ml~~iL~ 66 (402)
.++|+|+|. .||||.+.+|+.-|.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357889887 589999999998763
No 173
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=39.72 E-value=18 Score=29.73 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=18.2
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHH
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQM 64 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~i 64 (402)
+..+|++.|-+ ||||+..+|+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 55788999875 799999988754
No 174
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=39.58 E-value=21 Score=29.09 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=19.3
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHH
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL 65 (402)
+.+.|.++|. .||||.+..|+.-|
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4467888886 58999999998766
No 175
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=39.45 E-value=17 Score=29.48 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=18.7
Q ss_pred cEEEEecC--CChhhHHHHHHHHHH
Q 015701 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL~ 66 (402)
++|.++|. .||||++..|+.-|.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57888886 789999999987764
No 176
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=39.42 E-value=28 Score=30.13 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=25.8
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhc----CCce
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLNHL----GIEA 72 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~~~----g~~~ 72 (402)
+...|.+.|-. ||||.+..|..-|... |+.+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v 60 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHV 60 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceee
Confidence 45689999975 5999999999999987 8776
No 177
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=39.26 E-value=28 Score=32.57 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=23.3
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhc
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~~~ 68 (402)
.+..+|+|+|.+ ||||+...|...+...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 456799999976 5999999999988764
No 178
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=39.17 E-value=34 Score=33.24 Aligned_cols=40 Identities=25% Similarity=0.330 Sum_probs=32.0
Q ss_pred HHHHhhC-CCCCcEEEEecC------CChhhHHHHHHHHHHhcCCce
Q 015701 33 DFAAQVI-PRSIKILAVTGT------NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 33 ~~~~~~~-~~~~~vI~VTGT------~GKTTt~~ml~~iL~~~g~~~ 72 (402)
+.+.++- +.+.+.|.||+- -|||||+-=|.+.|...|.++
T Consensus 32 ~~l~~~~~~~~GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~ 78 (543)
T 3do6_A 32 RFLKSLENHEDGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKS 78 (543)
T ss_dssp THHHHTTTSCCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCE
T ss_pred HHhhhhhcCCCCeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCee
Confidence 3444432 246789999998 699999999999999999886
No 179
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=39.11 E-value=19 Score=29.36 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=18.5
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHH
Q 015701 43 IKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 43 ~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
...|.++|.. ||||++.+|+.-|
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578888874 7999999998766
No 180
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=38.92 E-value=23 Score=29.02 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=18.1
Q ss_pred cEEEEecC--CChhhHHHHHHHHH
Q 015701 44 KILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL 65 (402)
.+|.++|. .||||++..|+.-|
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 57889987 47999999988765
No 181
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=38.81 E-value=23 Score=29.02 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=19.3
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHH
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL 65 (402)
...+|.++|. .||||.+..|+.-|
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3467888885 68999999998766
No 182
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=38.80 E-value=18 Score=29.33 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=17.8
Q ss_pred cEEEEecC--CChhhHHHHHHHHH
Q 015701 44 KILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL 65 (402)
+.|.|+|. .||||++..|+.-|
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45778886 58999999998766
No 183
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=38.01 E-value=27 Score=34.69 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=25.7
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
...+|.++|. .||||++..|+.-|...|..+
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~ 403 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKV 403 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeE
Confidence 3568899877 579999999999998888665
No 184
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=37.86 E-value=76 Score=25.54 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=25.0
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH-hcCCce
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLN-HLGIEA 72 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~-~~g~~~ 72 (402)
+...+.+.|.+ ||||++..+...+. ..|..+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~ 70 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG 70 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE
Confidence 45789999965 69999999999987 667654
No 185
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=37.77 E-value=43 Score=33.89 Aligned_cols=31 Identities=29% Similarity=0.264 Sum_probs=26.6
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
+..+|.++|. .||||++..|+.-|.+.|..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~ 83 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPC 83 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 4568999996 789999999999998888765
No 186
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=37.20 E-value=21 Score=29.33 Aligned_cols=20 Identities=35% Similarity=0.512 Sum_probs=16.5
Q ss_pred cEEEEecCC--ChhhHHHHHHH
Q 015701 44 KILAVTGTN--GKSTVVTFVGQ 63 (402)
Q Consensus 44 ~vI~VTGT~--GKTTt~~ml~~ 63 (402)
.+|+++|.+ ||||+..+|+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 468888875 79999999975
No 187
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=36.31 E-value=41 Score=26.71 Aligned_cols=31 Identities=23% Similarity=0.157 Sum_probs=24.6
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCce
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~ 72 (402)
....+++.|.+ ||||+..++...+...|.++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~ 67 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNA 67 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcE
Confidence 34678899975 79999999999988766543
No 188
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=35.27 E-value=26 Score=28.34 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.7
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
++..++++.|-| ||||...+|..++
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 466799999987 5999999999887
No 189
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=35.11 E-value=37 Score=29.11 Aligned_cols=50 Identities=14% Similarity=0.099 Sum_probs=33.7
Q ss_pred HHHHHHHhcCCceeeHHHHHHhhCCCCCc---EEEEecC--CChhhHHHHHHHHHH
Q 015701 16 TGLACLLQSGKRVMSELDFAAQVIPRSIK---ILAVTGT--NGKSTVVTFVGQMLN 66 (402)
Q Consensus 16 p~~~~a~~~~~~~l~~~~~~~~~~~~~~~---vI~VTGT--~GKTTt~~ml~~iL~ 66 (402)
+.++..+-+++.+...+..+.... +..| .+.+.|. .||||++..|+..|.
T Consensus 29 ~I~~~l~yq~~~~~~f~~~l~~~~-~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 29 PIVQFLRYQQIEFITFLGALKSFL-KGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH-HTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCcCHHHHHHHHHHHH-hcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 334455556777666666555544 2333 7899987 789999988888874
No 190
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=34.40 E-value=21 Score=35.88 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=20.4
Q ss_pred CCcEEEEecCCChhhH-HHHHHHHHHhcCC
Q 015701 42 SIKILAVTGTNGKSTV-VTFVGQMLNHLGI 70 (402)
Q Consensus 42 ~~~vI~VTGT~GKTTt-~~ml~~iL~~~g~ 70 (402)
..-++|..|| |||+| +.-+.+++...|.
T Consensus 24 ~~lV~a~aGs-GKT~~l~~ri~~l~~~~~~ 52 (647)
T 3lfu_A 24 NLLVLAGAGS-GKTRVLVHRIAWLMSVENC 52 (647)
T ss_dssp CEEEEECTTS-CHHHHHHHHHHHHHHTSCC
T ss_pred CEEEEECCCC-CHHHHHHHHHHHHHHhCCC
Confidence 4457788887 99998 4557788876554
No 191
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=34.22 E-value=47 Score=29.51 Aligned_cols=32 Identities=28% Similarity=0.301 Sum_probs=25.4
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhc-CCce
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL-GIEA 72 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~~~-g~~~ 72 (402)
....+++|+|-+ ||||....|+..+... |.++
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v 67 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKV 67 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeE
Confidence 466799999977 8999999999888754 6444
No 192
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=33.67 E-value=30 Score=29.79 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=22.2
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
+..+|.|+|. .||||++..|+.-| |+.+
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~l---g~~~ 42 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEEL---GIHF 42 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHH---TCEE
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHc---CCcE
Confidence 4579999995 67999999999777 5554
No 193
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=33.59 E-value=57 Score=27.98 Aligned_cols=33 Identities=9% Similarity=0.021 Sum_probs=21.3
Q ss_pred CCCcEEEEecCCChhhHHHHHHHHH--HhcCCcee
Q 015701 41 RSIKILAVTGTNGKSTVVTFVGQML--NHLGIEAF 73 (402)
Q Consensus 41 ~~~~vI~VTGT~GKTTt~~ml~~iL--~~~g~~~~ 73 (402)
.+..+..+||+-||+-|+.+|..+. ..+|.++.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVl 60 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAI 60 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 3567889999955555555555544 45677774
No 194
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=33.58 E-value=23 Score=28.86 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=19.6
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHH
Q 015701 44 KILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 44 ~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
.+.+|+|-| ||||+...|..+|.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 388999987 59999999998885
No 195
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=32.57 E-value=2.2e+02 Score=26.65 Aligned_cols=93 Identities=18% Similarity=0.219 Sum_probs=56.8
Q ss_pred eEEEEcCCCCCHHHHHHHHccc---CCCcEEEE--EcCCCCcCCCCCCcchHhhhhcccc----ccEEE-EeCCChHHHH
Q 015701 269 VTWVDDSKATNLEATCTGLMDL---KGHKCVIL--LGGQAKVLNGQESNGFEKLIEPLNH----HRCVI-TFGYSGVLIW 338 (402)
Q Consensus 269 ~~iidD~~a~np~s~~~al~~~---~~~~~i~V--~g~~~~~~~~~~~~~~~~~~~~l~~----~d~vi-~~g~~~~~~~ 338 (402)
.-++|=.+..+.+.+..+++.+ ++-+.++| ||+..... ...+.+.+.+.. .-.|+ +-|.+.+.-.
T Consensus 284 aNflD~gG~a~~~~~~~~~~~il~d~~v~~ilvni~ggi~~~~-----~vA~gii~a~~~~~~~~pivvrl~G~n~~~g~ 358 (388)
T 2nu8_B 284 ANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCD-----LIADGIIGAVAEVGVNVPVVVRLEGNNAELGA 358 (388)
T ss_dssp CEEEECCSCCCHHHHHHHHHHHHTSTTCCEEEEEEESCSSCHH-----HHHHHHHHHHHHHTCCSCEEEEEESTTHHHHH
T ss_pred CceeEecCCCCHHHHHHHHHHHhcCCCCCEEEEEecCCcCCch-----HHHHHHHHHHHhcCCCCeEEEEeCCCCHHHHH
Confidence 3466644677889999988876 23344444 77554321 112233333321 22333 3477777777
Q ss_pred HHHHhCCCCccccccccHHHHHHHHHHhcC
Q 015701 339 KTLVNNGLSIPCFAVANMKDAVNHARRMAT 368 (402)
Q Consensus 339 ~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~ 368 (402)
+.|+..|+ +++.++++++|.+.+.+.++
T Consensus 359 ~~l~~~g~--~~~~~~~~~~aa~~~v~~~~ 386 (388)
T 2nu8_B 359 KKLADSGL--NIIAAKGLTDAAQQVVAAVE 386 (388)
T ss_dssp HHHHTTCS--SEEECSSHHHHHHHHHHHTT
T ss_pred HHHHHCCC--ceecCCCHHHHHHHHHHHhh
Confidence 88877664 66677999999999888764
No 196
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=31.70 E-value=1.7e+02 Score=27.43 Aligned_cols=92 Identities=16% Similarity=0.162 Sum_probs=56.2
Q ss_pred EEEEcCCCCCHHHHHHHHccc---CCCcEEE--EEcCCCCcCCCCCCcchHhhhhcccc----ccE-EEEeCCChHHHHH
Q 015701 270 TWVDDSKATNLEATCTGLMDL---KGHKCVI--LLGGQAKVLNGQESNGFEKLIEPLNH----HRC-VITFGYSGVLIWK 339 (402)
Q Consensus 270 ~iidD~~a~np~s~~~al~~~---~~~~~i~--V~g~~~~~~~~~~~~~~~~~~~~l~~----~d~-vi~~g~~~~~~~~ 339 (402)
-++|=.+..+++.+..+++.+ ++-+.++ |||+..... ...+.+.+.+.. .-. +-+.|.+.+.-.+
T Consensus 292 NflDvgG~a~~e~~~~al~~il~d~~v~~ilvni~ggi~~~d-----~vA~gii~a~~~~~~~~Pivvrl~G~n~~~g~~ 366 (395)
T 2fp4_B 292 NFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCA-----IIANGITKACRELELKVPLVVRLEGTNVHEAQN 366 (395)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHHCTTCCEEEEEEEESSSCHH-----HHHHHHHHHHHHHTCCSCEEEEEEETTHHHHHH
T ss_pred CcEEECCCCCHHHHHHHHHHHhCCCCCCEEEEEecCCccCcH-----HHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHH
Confidence 455534677899999998876 3334333 577654321 112233333321 122 3334777777777
Q ss_pred HHHhCCCCccccccccHHHHHHHHHHhcC
Q 015701 340 TLVNNGLSIPCFAVANMKDAVNHARRMAT 368 (402)
Q Consensus 340 ~l~~~~~~~~~~~~~~~~~ai~~~~~~~~ 368 (402)
.|+..|+ +++.++++++|.+.+.+.++
T Consensus 367 ~L~~~gl--~~~~~~~~~~Aa~~~v~~~~ 393 (395)
T 2fp4_B 367 ILTNSGL--PITSAVDLEDAAKKAVASVT 393 (395)
T ss_dssp HHHHTCS--CCEECSSHHHHHHHHHHTTC
T ss_pred HHHHCCC--ceEeCCCHHHHHHHHHHHhh
Confidence 7877664 66777999999999887654
No 197
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=31.18 E-value=34 Score=28.73 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=18.4
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 45 vI~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
.|.|+|- .||||++.+|+.-+ |..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---~~~~ 28 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY---EIPH 28 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---CCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCcE
Confidence 4677885 58999999997655 5544
No 198
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=30.90 E-value=25 Score=29.63 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=20.3
Q ss_pred cEEEEecC--CChhhHHHHHHHHHHhcCCcee
Q 015701 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
.+|+|+|. .||||++.+|+..| |+.+.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~---g~~~~ 32 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL---SMIYV 32 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT---TCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc---CCcee
Confidence 47889985 68999999988765 55443
No 199
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=30.86 E-value=41 Score=33.60 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=24.8
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHhcC-Cce
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLG-IEA 72 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL~~~g-~~~ 72 (402)
+..+|.+||- .||||++..|+..|...| ..+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~ 428 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSV 428 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCE
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceE
Confidence 4468899875 569999999999999877 554
No 200
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=30.83 E-value=41 Score=28.79 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=19.9
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHH
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL~ 66 (402)
....|.++|. .||||.+.+|+.-|.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4457888886 689999999998763
No 201
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=30.78 E-value=32 Score=29.08 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=17.9
Q ss_pred cEEEEecC--CChhhHHHHHHHHH
Q 015701 44 KILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL 65 (402)
..|.++|. .||||.+.+|+.-|
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 46777775 68999999999877
No 202
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=30.44 E-value=32 Score=30.24 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=19.6
Q ss_pred CcEEEEecCC--ChhhHHHHHHHHH
Q 015701 43 IKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 43 ~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.++|+++|.. ||||+..+|+..|
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5688999975 7999999999876
No 203
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=29.42 E-value=1.1e+02 Score=25.04 Aligned_cols=45 Identities=9% Similarity=0.138 Sum_probs=23.2
Q ss_pred HHHHHHHHhCCCCc-cccccccHHHHHHH-HHHhcC--CCCEEEEcCCC
Q 015701 335 VLIWKTLVNNGLSI-PCFAVANMKDAVNH-ARRMAT--NGDAIVLSPGC 379 (402)
Q Consensus 335 ~~~~~~l~~~~~~~-~~~~~~~~~~ai~~-~~~~~~--~~d~vll~~G~ 379 (402)
..+.+.+++.|... ....++|-.+++.. +.+.+. ..|+|++++|.
T Consensus 31 ~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~ 79 (172)
T 1mkz_A 31 HYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGT 79 (172)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCC
T ss_pred HHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCC
Confidence 45666777666522 12234443333333 333333 37999887554
No 204
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=29.07 E-value=19 Score=35.50 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=19.0
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
....|+|+|-+ |||||..+|..++.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 44568888865 79999988876663
No 205
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=28.58 E-value=43 Score=29.08 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=22.9
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCceeeecc
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGN 77 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~~~g~ 77 (402)
...+|+|+|.. ||||++.+|+.-| |+.+...+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l---g~~~~d~g~ 42 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL---GARYLDTGA 42 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH---TCEEEEHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---CCCcccCCc
Confidence 34589999964 8999999998776 444433333
No 206
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=28.40 E-value=36 Score=29.16 Aligned_cols=26 Identities=15% Similarity=0.200 Sum_probs=20.6
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
.+..+++|.|-| ||||...+|...+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 466799999987 69999998877653
No 207
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=28.39 E-value=27 Score=33.63 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=20.4
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCC
Q 015701 45 ILAVTGT--NGKSTVVTFVGQMLNHLGI 70 (402)
Q Consensus 45 vI~VTGT--~GKTTt~~ml~~iL~~~g~ 70 (402)
.+.|+|- .|||++...+...|...|.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 5666653 4899999999888888876
No 208
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=28.01 E-value=34 Score=33.68 Aligned_cols=26 Identities=0% Similarity=-0.096 Sum_probs=22.8
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHh
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQMLNH 67 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL~~ 67 (402)
+..+|.++|- .||||+...|+.-|..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 5578999995 6899999999999986
No 209
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=27.76 E-value=52 Score=27.50 Aligned_cols=26 Identities=12% Similarity=0.270 Sum_probs=19.3
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHHHh
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQMLNH 67 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL~~ 67 (402)
+.++|+|+|. .||||+...+..-+..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGN 56 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 5678888886 7999988777665543
No 210
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=27.02 E-value=29 Score=31.57 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=17.9
Q ss_pred CCcEEEEecCCC--hhhHHHHHHHH
Q 015701 42 SIKILAVTGTNG--KSTVVTFVGQM 64 (402)
Q Consensus 42 ~~~vI~VTGT~G--KTTt~~ml~~i 64 (402)
++++++|||-+| |||....|...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 578999999775 88887766654
No 211
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=26.54 E-value=40 Score=26.99 Aligned_cols=20 Identities=35% Similarity=0.310 Sum_probs=15.9
Q ss_pred cEEEEecC--CChhhHHHHHHH
Q 015701 44 KILAVTGT--NGKSTVVTFVGQ 63 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~ 63 (402)
++|.++|. .||||.+..|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 36778776 589999998886
No 212
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=26.14 E-value=81 Score=26.74 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=19.2
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQ 63 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~ 63 (402)
.+..+++|.|-| ||||+..+|..
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 366799999987 69999998883
No 213
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=26.11 E-value=16 Score=29.93 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=28.6
Q ss_pred CCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEec
Q 015701 12 QLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTG 50 (402)
Q Consensus 12 ~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTG 50 (402)
.+.|.|+.+|..+++|+. |+++.+..- -..++++|-|
T Consensus 214 eesneelirakhnnipiv-rpewvrace-vekrivgvrg 250 (290)
T 4gns_A 214 EESNEELIRAKHNNIPIV-RPEWVRACE-VEKRIVGVRG 250 (290)
T ss_dssp CTTCHHHHHHHHTTCCEE-CTHHHHHHH-HTTSCCCSGG
T ss_pred ccchHHHHhhhccCCCcc-CHHHHHHHh-hhheeeeeee
Confidence 478999999999999998 788887543 2456677766
No 214
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=25.97 E-value=58 Score=29.57 Aligned_cols=28 Identities=29% Similarity=0.286 Sum_probs=23.4
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhcCC
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGI 70 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~ 70 (402)
.+..+++|.|-+ ||||...+|..++ .|.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~--~G~ 153 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL--GGS 153 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH--TCE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc--Cce
Confidence 467899999976 5999999999998 553
No 215
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=25.86 E-value=38 Score=29.95 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=20.1
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+..+++|.|-| ||||...+|.-++
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 466799999998 6999988876544
No 216
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=25.06 E-value=44 Score=27.98 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=18.3
Q ss_pred EEEEecC--CChhhHHHHHHHHHHhcCCcee
Q 015701 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 45 vI~VTGT--~GKTTt~~ml~~iL~~~g~~~~ 73 (402)
.|+|+|- .||||++.+|+.- .|..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~---~~~~~i 29 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK---YGIPHI 29 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH---SSCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHH---hCCcEE
Confidence 3677874 5899999998754 355543
No 217
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=25.05 E-value=56 Score=28.24 Aligned_cols=30 Identities=13% Similarity=0.006 Sum_probs=22.3
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHHhcCCcee
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~ 73 (402)
++...|.++|.- ||||.+.+|+.-+ |..+.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~---g~~~i 58 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH---CYCHL 58 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH---CCEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh---CCeEE
Confidence 355689999974 7999999998655 55443
No 218
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=25.02 E-value=1.7e+02 Score=21.90 Aligned_cols=65 Identities=12% Similarity=0.181 Sum_probs=33.4
Q ss_pred hhhccccccEEEEeCCCh-HHHHHHHHhCCCCccccc--cccHHHHHHHHHHhcCC-CCEEEEc-CCCcccc
Q 015701 317 LIEPLNHHRCVITFGYSG-VLIWKTLVNNGLSIPCFA--VANMKDAVNHARRMATN-GDAIVLS-PGCASFD 383 (402)
Q Consensus 317 ~~~~l~~~d~vi~~g~~~-~~~~~~l~~~~~~~~~~~--~~~~~~ai~~~~~~~~~-~d~vll~-~G~~s~~ 383 (402)
..+.++++|.|+...... ..+.+.+...+ ..+.. ..+.++..+.+.+.++. .++++++ .|...+.
T Consensus 25 a~~~L~~advv~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~G~~V~~l~d~GdP~i~ 94 (117)
T 3hh1_A 25 AVNTLRNAGAIACEDTRRTSILLKHFGIEG--KRLVSYHSFNEERAVRQVIELLEEGSDVALVTDAGTPAIS 94 (117)
T ss_dssp HHHHHHHCSEEEESCHHHHHHHHHHTTCCS--CCEEECCSTTHHHHHHHHHHHHHTTCCEEEEEETTSCGGG
T ss_pred HHHHHHhCCEEEEecCchHHHHHHHhCCCC--CEEeccCCccHHHHHHHHHHHHHCCCeEEEEecCCcCeEe
Confidence 445566688887643221 23333331111 12221 23344555666666654 5788888 7877764
No 219
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=24.68 E-value=1.1e+02 Score=24.80 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=12.4
Q ss_pred CHHHHHHHHcccCCCcEEEEEcC
Q 015701 279 NLEATCTGLMDLKGHKCVILLGG 301 (402)
Q Consensus 279 np~s~~~al~~~~~~~~i~V~g~ 301 (402)
+++.+..+.+.+.+.+.|.++|.
T Consensus 25 ~~~~l~~~~~~i~~a~~I~i~G~ 47 (187)
T 3sho_A 25 QPEAIEAAVEAICRADHVIVVGM 47 (187)
T ss_dssp CHHHHHHHHHHHHHCSEEEEECC
T ss_pred CHHHHHHHHHHHHhCCEEEEEec
Confidence 34455555555544456666664
No 220
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=24.66 E-value=43 Score=28.10 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=21.6
Q ss_pred CcEEEEec--CCChhhHHHHHHHHHHhcCCce
Q 015701 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 43 ~~vI~VTG--T~GKTTt~~ml~~iL~~~g~~~ 72 (402)
.++|.|+| -.||||+...|+.-| |+.+
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l---g~~~ 34 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY---NIPL 34 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT---TCCE
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh---CcCE
Confidence 36899998 578999999999776 5554
No 221
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=24.45 E-value=40 Score=28.60 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=17.6
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHH
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL 65 (402)
+...|.++|. .||||.+..|+.-|
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3456777775 58999999998754
No 222
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=24.13 E-value=43 Score=29.52 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=20.1
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+..+++|.|-| ||||...+|.-++
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 466899999998 6999988876554
No 223
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=23.90 E-value=57 Score=26.91 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=25.0
Q ss_pred hHHHHHHHHhCCCCc-ccccc-ccHHHHHHHHHHhcCCCCEEEEcCCC
Q 015701 334 GVLIWKTLVNNGLSI-PCFAV-ANMKDAVNHARRMATNGDAIVLSPGC 379 (402)
Q Consensus 334 ~~~~~~~l~~~~~~~-~~~~~-~~~~~ai~~~~~~~~~~d~vll~~G~ 379 (402)
...+.+.+++.|... ....+ +|.++..+.+.+.+...|+|++++|.
T Consensus 25 ~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~ 72 (172)
T 3kbq_A 25 AAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGL 72 (172)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCC
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 345667777766532 12233 44444444444444457999887554
No 224
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=23.66 E-value=53 Score=29.01 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=19.8
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQM 64 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~i 64 (402)
.+..+++|.|-| ||||...+|.-+
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 466799999988 699998888755
No 225
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=23.46 E-value=46 Score=29.42 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=19.7
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+..+++|.|-| ||||...+|.-++
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 466799999998 6999888876443
No 226
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=23.37 E-value=53 Score=28.55 Aligned_cols=24 Identities=17% Similarity=0.385 Sum_probs=19.7
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+ .+++|.|-| ||||...+|+-++
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999998 6999988887654
No 227
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=23.33 E-value=41 Score=28.85 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=19.1
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
+..+++|.|-| ||||...+|.-++
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56799999998 6999888876443
No 228
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=22.98 E-value=81 Score=25.89 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=24.2
Q ss_pred cEEEEecCC--ChhhHHHHHHHHHHhcCCce
Q 015701 44 KILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 44 ~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~ 72 (402)
+.+.++|.. |||+.+..++.-+...|..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~ 85 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSS 85 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 678888875 89999999999888777665
No 229
>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi malaria parasite; 2.70A {Plasmodium falciparum} SCOP: c.86.1.1 PDB: 1ltk_A* 3oza_A
Probab=22.91 E-value=2.9e+02 Score=26.15 Aligned_cols=46 Identities=17% Similarity=0.099 Sum_probs=30.2
Q ss_pred CCCcEEEEEcCCCCcCCCCCCcchHhhhhccccccEEEEeCCChHHHHHHHH
Q 015701 291 KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLV 342 (402)
Q Consensus 291 ~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~~d~vi~~g~~~~~~~~~l~ 342 (402)
|.++.++|+|+..-.. -..-+-+.+.++|.+++-|-....+.+.++
T Consensus 205 p~rP~vaIlGGaKVsd------Ki~vi~nLl~kvD~liiGGgma~tFl~A~~ 250 (417)
T 3oz7_A 205 PQRPLLAILGGAKVSD------KIQLIKNLLDKVDRMIIGGGMAYTFKKVLN 250 (417)
T ss_dssp CCSSEEEEEECSCSTT------SHHHHHHHHTTCSEEEEETTHHHHHHHHHH
T ss_pred CCCceEEEEeCccHHH------HHHHHHHHHHhcCEEEeccHHHHHHHHHHc
Confidence 4578999999763221 133333445569999998877777766644
No 230
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=22.87 E-value=1.1e+02 Score=24.80 Aligned_cols=46 Identities=30% Similarity=0.299 Sum_probs=25.6
Q ss_pred ChHHHHHHHHhCCCCc-cccccccHHHHHHHHHH-hc-CCCCEEEEcCCC
Q 015701 333 SGVLIWKTLVNNGLSI-PCFAVANMKDAVNHARR-MA-TNGDAIVLSPGC 379 (402)
Q Consensus 333 ~~~~~~~~l~~~~~~~-~~~~~~~~~~ai~~~~~-~~-~~~d~vll~~G~ 379 (402)
+...+.+.+++.|... ....++|- +++..+++ .+ ..-|+|++++|.
T Consensus 28 n~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~ 76 (164)
T 3pzy_A 28 CGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGT 76 (164)
T ss_dssp HHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCC
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCC
Confidence 3456777777776522 22234444 54554443 33 367999887553
No 231
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=22.53 E-value=49 Score=29.11 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=19.8
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+..+++|.|-| ||||...+|.-++
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 466799999988 6999988876543
No 232
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=22.52 E-value=1e+02 Score=25.38 Aligned_cols=46 Identities=24% Similarity=0.225 Sum_probs=24.9
Q ss_pred hHHHHHHHHhCCCCc-cccccccHHHHHHH-HHHhcCC--CCEEEEcCCC
Q 015701 334 GVLIWKTLVNNGLSI-PCFAVANMKDAVNH-ARRMATN--GDAIVLSPGC 379 (402)
Q Consensus 334 ~~~~~~~l~~~~~~~-~~~~~~~~~~ai~~-~~~~~~~--~d~vll~~G~ 379 (402)
...+.+.+++.|... ....++|-.+++.. +.+.+.. -|+|++++|.
T Consensus 42 ~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~ 91 (178)
T 2pjk_A 42 GDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 345667777776532 12234444444444 4444444 6999887553
No 233
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=22.33 E-value=58 Score=27.55 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=19.9
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHH
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQM 64 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~i 64 (402)
+..+++|.|-| ||||...+|.-+
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 55789999998 599999999877
No 234
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=22.30 E-value=80 Score=25.67 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=23.4
Q ss_pred HHHHHHHHhCCCCc-ccccccc-HHHHHHHHHHhcC--CCCEEEEcCCC
Q 015701 335 VLIWKTLVNNGLSI-PCFAVAN-MKDAVNHARRMAT--NGDAIVLSPGC 379 (402)
Q Consensus 335 ~~~~~~l~~~~~~~-~~~~~~~-~~~ai~~~~~~~~--~~d~vll~~G~ 379 (402)
..+.+.+++.|... ....++| .++..+.+.+.+. ..|+|++++|.
T Consensus 34 ~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~ 82 (169)
T 1y5e_A 34 QLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGT 82 (169)
T ss_dssp HHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCC
T ss_pred HHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 44566666655421 1223344 4444444444444 57999887554
No 235
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=21.69 E-value=65 Score=28.06 Aligned_cols=22 Identities=18% Similarity=0.293 Sum_probs=16.9
Q ss_pred cEEEEecC--CChhhHHHHHHHHH
Q 015701 44 KILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 44 ~vI~VTGT--~GKTTt~~ml~~iL 65 (402)
++|.|+|. .||||.+..|+.-+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 46777775 48999999888655
No 236
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=21.66 E-value=60 Score=28.31 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=19.5
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQM 64 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~i 64 (402)
.+..+++|.|-| ||||...+|.-+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356799999998 699998888754
No 237
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=21.61 E-value=60 Score=27.18 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=17.9
Q ss_pred EEEecC--CChhhHHHHHHHHHHhcCCce
Q 015701 46 LAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (402)
Q Consensus 46 I~VTGT--~GKTTt~~ml~~iL~~~g~~~ 72 (402)
|.|+|. .||||.+.+|+.-| |..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~---g~~~ 28 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY---GIPQ 28 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH---CCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCeE
Confidence 566665 58999999998866 5554
No 238
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=21.26 E-value=48 Score=28.11 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.1
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
+..+++|.|-+ ||||+..+|..++
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 55789999965 7999999998876
No 239
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=21.11 E-value=52 Score=28.48 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=19.1
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
+..+++|.|-| ||||...+|.-++
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56799999998 6999888776443
No 240
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=20.96 E-value=55 Score=29.01 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=20.0
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
.+..+++|.|-| ||||...+|.-++
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 466799999988 5999988886554
No 241
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=20.95 E-value=73 Score=26.55 Aligned_cols=46 Identities=20% Similarity=0.240 Sum_probs=24.0
Q ss_pred hHHHHHHHHhCCCCc-cccccccHHHHHHH-HHHhc-CCCCEEEEcCCC
Q 015701 334 GVLIWKTLVNNGLSI-PCFAVANMKDAVNH-ARRMA-TNGDAIVLSPGC 379 (402)
Q Consensus 334 ~~~~~~~l~~~~~~~-~~~~~~~~~~ai~~-~~~~~-~~~d~vll~~G~ 379 (402)
...+.+.+++.|... ....++|-.+.+.. +.+.+ +.-|+|+.++|.
T Consensus 51 ~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGt 99 (185)
T 3rfq_A 51 GPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGT 99 (185)
T ss_dssp HHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCC
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 345666676666421 12233443344444 33333 567999887554
No 242
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=20.91 E-value=53 Score=28.81 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=19.6
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
+..+++|.|-| ||||...+|.-++
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56799999998 6999988886554
No 243
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=20.87 E-value=1.4e+02 Score=29.73 Aligned_cols=33 Identities=30% Similarity=0.482 Sum_probs=26.6
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHHHhcCCceee
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
..+++.|+|-. |||||...+...|...|.++..
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~ 237 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGL 237 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 34677788764 7999999999999999988744
No 244
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=20.66 E-value=68 Score=27.15 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=16.4
Q ss_pred EEEEecC--CChhhHHHHHHHHH
Q 015701 45 ILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 45 vI~VTGT--~GKTTt~~ml~~iL 65 (402)
.|.++|. .||||.+.+|+.-|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 3566665 58999999999876
No 245
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=20.62 E-value=53 Score=28.77 Aligned_cols=24 Identities=42% Similarity=0.502 Sum_probs=19.2
Q ss_pred CCcEEEEecCC--ChhhHHHHHHHHH
Q 015701 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (402)
Q Consensus 42 ~~~vI~VTGT~--GKTTt~~ml~~iL 65 (402)
+..+++|.|-| ||||...+|.-++
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56799999998 7999888876543
No 246
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=20.61 E-value=76 Score=25.68 Aligned_cols=46 Identities=17% Similarity=0.107 Sum_probs=23.5
Q ss_pred hHHHHHHHHhCCCCc-ccccccc-HHHHHHHHHHhcC--CCCEEEEcCCC
Q 015701 334 GVLIWKTLVNNGLSI-PCFAVAN-MKDAVNHARRMAT--NGDAIVLSPGC 379 (402)
Q Consensus 334 ~~~~~~~l~~~~~~~-~~~~~~~-~~~ai~~~~~~~~--~~d~vll~~G~ 379 (402)
...+.+.+++.|... ....++| .++..+.+.+.+. ..|+|++++|.
T Consensus 23 ~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~ 72 (164)
T 2is8_A 23 HLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGT 72 (164)
T ss_dssp HHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred HHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 345666666655421 1223344 4443333433343 57999887554
No 247
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=20.53 E-value=40 Score=28.81 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=19.1
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQM 64 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~i 64 (402)
++..+|+|.|.+ ||||...+|...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 355799999987 699988888765
No 248
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=20.39 E-value=55 Score=28.37 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=20.7
Q ss_pred CCCcEEEEecCC--ChhhHHHHHHHHHH
Q 015701 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (402)
Q Consensus 41 ~~~~vI~VTGT~--GKTTt~~ml~~iL~ 66 (402)
.+..+++|.|-| ||||...+|.-++.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 466799999988 59999888876553
No 249
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=20.35 E-value=50 Score=27.46 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=18.2
Q ss_pred CCcEEEEecC--CChhhHHHHHHHHH
Q 015701 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (402)
Q Consensus 42 ~~~vI~VTGT--~GKTTt~~ml~~iL 65 (402)
+.++|.++|- .||||.+..|...+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4566777775 58999999988766
No 250
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=20.21 E-value=65 Score=32.03 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=24.5
Q ss_pred cEEEEe---cCCChhhHHHHHHHHHHhcCCceee
Q 015701 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (402)
Q Consensus 44 ~vI~VT---GT~GKTTt~~ml~~iL~~~g~~~~~ 74 (402)
++|.|+ |-.||||++.-++..|...|.++..
T Consensus 327 ~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vll 360 (589)
T 1ihu_A 327 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHL 360 (589)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEE
Confidence 445554 5679999999999999999988743
No 251
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=20.19 E-value=91 Score=27.99 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=20.0
Q ss_pred HHHHhhCCCCCcEEEEecCCC--hhhHHHHHH
Q 015701 33 DFAAQVIPRSIKILAVTGTNG--KSTVVTFVG 62 (402)
Q Consensus 33 ~~~~~~~~~~~~vI~VTGT~G--KTTt~~ml~ 62 (402)
+.+.... ...++++.|.|| |||+..+|.
T Consensus 157 ~~L~~~l--~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 157 DELVDYL--EGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHT--TTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHhhc--cCcEEEEECCCCCCHHHHHHHHH
Confidence 3444444 456888888887 999888887
Done!