Query 015702
Match_columns 402
No_of_seqs 295 out of 977
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 08:46:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015702.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015702hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 100.0 1.3E-57 2.8E-62 441.0 25.0 270 83-393 47-341 (345)
2 PF00544 Pec_lyase_C: Pectate 100.0 1.9E-52 4.2E-57 391.0 13.6 191 119-319 1-200 (200)
3 smart00656 Amb_all Amb_all dom 100.0 8.4E-49 1.8E-53 363.9 20.2 171 135-322 10-189 (190)
4 TIGR03805 beta_helix_1 paralle 98.8 5.7E-07 1.2E-11 90.1 21.9 154 199-366 105-287 (314)
5 PF14592 Chondroitinas_B: Chon 98.4 5.6E-06 1.2E-10 85.8 15.1 165 110-280 6-214 (425)
6 PLN02218 polygalacturonase ADP 98.1 0.00011 2.4E-09 76.9 16.4 136 159-319 217-356 (431)
7 PLN02188 polygalacturonase/gly 97.9 0.00027 5.8E-09 73.4 15.6 123 158-301 179-307 (404)
8 PLN03003 Probable polygalactur 97.9 0.00029 6.3E-09 74.2 15.4 165 120-299 104-286 (456)
9 PLN02793 Probable polygalactur 97.9 0.0003 6.5E-09 73.9 15.3 106 159-285 202-308 (443)
10 TIGR03805 beta_helix_1 paralle 97.9 0.00032 7E-09 70.4 14.8 155 140-304 62-247 (314)
11 PF13229 Beta_helix: Right han 97.8 0.00018 3.9E-09 62.0 10.6 133 159-323 2-138 (158)
12 PLN02155 polygalacturonase 97.7 0.00065 1.4E-08 70.4 14.7 123 158-301 169-296 (394)
13 PLN03010 polygalacturonase 97.6 0.0033 7.2E-08 65.5 18.0 99 199-301 205-307 (409)
14 PF00295 Glyco_hydro_28: Glyco 97.6 0.00085 1.8E-08 67.5 12.4 151 118-303 90-244 (326)
15 PF05048 NosD: Periplasmic cop 97.5 0.0076 1.6E-07 57.1 16.9 85 202-297 80-166 (236)
16 PLN02218 polygalacturonase ADP 97.4 0.0079 1.7E-07 63.1 17.5 120 120-275 147-285 (431)
17 PF13229 Beta_helix: Right han 97.4 0.002 4.3E-08 55.5 10.8 131 157-319 23-158 (158)
18 PF12708 Pectate_lyase_3: Pect 97.2 0.0064 1.4E-07 55.9 12.7 152 111-278 21-221 (225)
19 TIGR03808 RR_plus_rpt_1 twin-a 97.1 0.014 3.1E-07 61.3 15.2 158 143-321 122-332 (455)
20 PF01696 Adeno_E1B_55K: Adenov 97.1 0.051 1.1E-06 56.2 18.5 175 111-324 57-242 (386)
21 PLN02155 polygalacturonase 97.0 0.025 5.5E-07 58.7 16.0 141 121-298 107-268 (394)
22 PLN03003 Probable polygalactur 97.0 0.012 2.7E-07 62.1 13.5 64 202-274 162-230 (456)
23 PF05048 NosD: Periplasmic cop 96.9 0.011 2.4E-07 55.9 11.9 129 158-320 36-166 (236)
24 PF00295 Glyco_hydro_28: Glyco 96.9 0.0084 1.8E-07 60.4 10.9 107 138-274 63-184 (326)
25 PLN02197 pectinesterase 96.7 0.026 5.6E-07 61.5 14.1 149 63-244 244-423 (588)
26 PLN02480 Probable pectinestera 96.7 0.043 9.3E-07 56.1 14.6 119 110-246 62-198 (343)
27 TIGR03808 RR_plus_rpt_1 twin-a 96.7 0.09 2E-06 55.4 17.1 95 111-222 57-156 (455)
28 PLN03010 polygalacturonase 96.7 0.038 8.3E-07 57.7 14.4 101 142-274 146-251 (409)
29 smart00656 Amb_all Amb_all dom 96.6 0.077 1.7E-06 49.7 14.7 135 140-298 44-188 (190)
30 PLN02793 Probable polygalactur 96.6 0.055 1.2E-06 57.1 14.7 109 136-274 144-269 (443)
31 PLN02188 polygalacturonase/gly 96.1 0.097 2.1E-06 54.6 13.3 118 121-274 114-247 (404)
32 PF00544 Pec_lyase_C: Pectate 96.1 0.05 1.1E-06 51.2 10.2 118 155-296 73-200 (200)
33 PF07602 DUF1565: Protein of u 96.0 0.26 5.6E-06 48.3 15.1 186 110-319 17-239 (246)
34 COG5434 PGU1 Endopygalactoruna 95.2 0.2 4.2E-06 54.2 11.7 103 158-284 262-375 (542)
35 PLN02170 probable pectinestera 94.9 0.37 8E-06 52.0 12.7 112 110-244 239-372 (529)
36 PLN02432 putative pectinestera 94.5 0.72 1.6E-05 46.3 13.0 120 110-254 25-161 (293)
37 PLN02301 pectinesterase/pectin 94.5 0.51 1.1E-05 51.2 12.7 112 110-244 250-382 (548)
38 PLN02416 probable pectinestera 94.4 0.42 9E-06 51.8 12.0 113 110-245 244-377 (541)
39 PF14592 Chondroitinas_B: Chon 94.2 0.33 7.1E-06 51.0 10.3 116 199-325 182-325 (425)
40 PLN02176 putative pectinestera 94.2 1.2 2.5E-05 45.7 13.9 119 110-245 53-188 (340)
41 PLN02682 pectinesterase family 94.1 0.88 1.9E-05 47.1 13.0 119 110-246 84-229 (369)
42 PLN02773 pectinesterase 93.7 1.1 2.4E-05 45.5 12.6 113 110-245 19-162 (317)
43 PLN02506 putative pectinestera 93.7 0.74 1.6E-05 49.9 12.0 114 110-245 246-379 (537)
44 PLN02314 pectinesterase 93.6 0.66 1.4E-05 50.7 11.7 99 110-228 292-411 (586)
45 PLN02708 Probable pectinestera 93.5 0.86 1.9E-05 49.6 12.3 99 110-228 255-376 (553)
46 PLN02995 Probable pectinestera 93.5 1 2.2E-05 48.8 12.7 113 110-245 237-372 (539)
47 PLN02634 probable pectinestera 93.3 1.8 3.8E-05 44.8 13.5 119 110-246 70-215 (359)
48 PLN02201 probable pectinestera 93.3 1 2.3E-05 48.6 12.3 113 110-245 220-353 (520)
49 PLN02488 probable pectinestera 93.3 1 2.3E-05 48.3 12.1 99 110-228 211-330 (509)
50 PLN02665 pectinesterase family 93.1 1.6 3.6E-05 45.1 13.0 128 110-256 82-229 (366)
51 COG3420 NosD Nitrous oxidase a 93.0 1.1 2.4E-05 45.9 11.2 93 137-245 100-192 (408)
52 PLN03043 Probable pectinestera 93.0 1.3 2.7E-05 48.1 12.5 99 110-228 237-359 (538)
53 PLN02304 probable pectinestera 92.7 2.1 4.5E-05 44.5 13.1 119 110-246 89-228 (379)
54 PLN02916 pectinesterase family 92.6 1.4 3.1E-05 47.3 12.1 112 110-244 201-336 (502)
55 PLN02484 probable pectinestera 92.5 1.3 2.8E-05 48.6 11.9 101 110-228 286-406 (587)
56 PLN02217 probable pectinestera 92.4 1.3 2.9E-05 49.1 11.9 115 110-244 264-416 (670)
57 PLN02990 Probable pectinestera 92.4 1.8 3.8E-05 47.4 12.6 99 110-228 273-393 (572)
58 PLN02313 Pectinesterase/pectin 92.3 1.3 2.9E-05 48.4 11.7 98 110-227 289-407 (587)
59 PLN02745 Putative pectinestera 91.9 2.5 5.4E-05 46.4 13.1 113 110-245 299-432 (596)
60 PLN02497 probable pectinestera 91.3 4.1 8.8E-05 41.7 13.1 120 110-245 46-182 (331)
61 PLN02671 pectinesterase 91.3 4.1 8.8E-05 42.1 13.2 117 110-245 73-218 (359)
62 PLN02468 putative pectinestera 91.1 2.2 4.8E-05 46.5 11.8 99 110-228 272-391 (565)
63 PLN02933 Probable pectinestera 90.8 3.4 7.4E-05 44.8 12.6 113 110-245 232-365 (530)
64 COG5434 PGU1 Endopygalactoruna 90.4 1 2.3E-05 48.8 8.3 144 118-273 236-395 (542)
65 PLN02713 Probable pectinestera 90.1 4.7 0.0001 44.1 13.1 99 110-228 264-386 (566)
66 PF01095 Pectinesterase: Pecti 89.9 2.7 5.9E-05 42.2 10.4 123 110-255 14-156 (298)
67 PRK10531 acyl-CoA thioesterase 88.3 12 0.00026 39.6 14.1 52 164-228 204-256 (422)
68 COG3866 PelB Pectate lyase [Ca 88.3 5.6 0.00012 40.4 11.1 115 200-321 115-250 (345)
69 PF08480 Disaggr_assoc: Disagg 87.6 8.2 0.00018 36.6 11.0 88 234-323 2-110 (198)
70 PF04431 Pec_lyase_N: Pectate 85.7 0.62 1.4E-05 35.7 2.2 18 22-39 23-40 (56)
71 PF12708 Pectate_lyase_3: Pect 80.6 24 0.00052 32.1 11.1 30 201-230 112-141 (225)
72 TIGR03804 para_beta_helix para 66.6 9.6 0.00021 26.7 3.7 41 203-245 1-41 (44)
73 PF08480 Disaggr_assoc: Disagg 63.1 1.4E+02 0.003 28.6 11.5 71 209-280 33-112 (198)
74 PF07602 DUF1565: Protein of u 61.9 34 0.00074 33.6 7.7 90 140-251 96-193 (246)
75 PF03211 Pectate_lyase: Pectat 58.8 59 0.0013 31.4 8.6 53 196-249 91-144 (215)
76 COG3420 NosD Nitrous oxidase a 56.7 2.4E+02 0.0051 29.6 12.8 120 157-287 69-196 (408)
77 PF07822 Toxin_13: Neurotoxin 53.3 2 4.3E-05 31.9 -1.8 20 56-75 20-39 (55)
78 PRK10123 wcaM putative colanic 48.8 32 0.0007 35.0 5.2 54 163-227 265-318 (464)
79 TIGR03804 para_beta_helix para 42.4 52 0.0011 22.8 4.2 41 160-222 2-42 (44)
80 PF01696 Adeno_E1B_55K: Adenov 34.2 5.2E+02 0.011 27.3 11.5 97 160-274 139-238 (386)
81 PF10880 DUF2673: Protein of u 30.5 32 0.00069 26.6 1.5 26 9-34 9-34 (65)
82 PF12541 DUF3737: Protein of u 30.4 77 0.0017 31.8 4.5 13 164-176 17-29 (277)
83 PF06355 Aegerolysin: Aegeroly 29.2 3.1E+02 0.0068 24.4 7.8 71 165-241 14-88 (131)
84 PF12541 DUF3737: Protein of u 20.2 9E+02 0.02 24.4 10.7 30 265-298 195-224 (277)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-57 Score=441.00 Aligned_cols=270 Identities=29% Similarity=0.364 Sum_probs=219.7
Q ss_pred CCcCCCCCeeEEEcCCCCCCCCCCCchhHHHhhhcCCCEEEEEeeeeEEeeC------ceEEeecCeeEeecCCceEEeC
Q 015702 83 QAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLK------EELIMNSFKTIDGRGASVHIAG 156 (402)
Q Consensus 83 ~ttGG~gG~vy~VT~~~D~~~~~~~pGtLr~av~~~~P~~IvF~~~g~I~L~------~~L~v~snkTI~G~ga~~~I~~ 156 (402)
+||||.||++++|++.+| |..++...+|.++|.-+.|+|++. .+|.+.|||||.|.|++++|.
T Consensus 47 GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~- 115 (345)
T COG3866 47 GTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLV- 115 (345)
T ss_pred CcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEE-
Confidence 799999999999999998 788889999996666667888876 467789999999999999998
Q ss_pred CceEEEEeeecEEEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEE-eCCceEEEEeeEecC--------CCCCee
Q 015702 157 GPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSI-FGGSHVWVDHCSLSN--------CNDGLI 227 (402)
Q Consensus 157 G~~i~i~~a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i-~gs~nVWIDHcs~s~--------~~Dgli 227 (402)
|++|+|+.+.|||||||+|++...++ ...|+|+| .+++|||||||+|+. ..||++
T Consensus 116 g~gl~i~~a~NVIirNltf~~~~~~d----------------~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~ 179 (345)
T COG3866 116 GGGLKIRDAGNVIIRNLTFEGFYQGD----------------PNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLV 179 (345)
T ss_pred eceEEEEeCCcEEEEeeEEEeeccCC----------------CCCCcEEeccCCeEEEEEeeEeccccccccccCCCccE
Confidence 77999999999999999999865321 12699999 579999999999999 799999
Q ss_pred EeeeCCceEEEEcceecccCeeeecCCCCcc-cCCCcceEEEEceeecCCCcCCCccccCceEEEEcCeeeCCc--ceee
Q 015702 228 DAIHGSTAITISNNYMTHHNKVMLLGHSDTF-TQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWE--MYAL 304 (402)
Q Consensus 228 Dv~~~s~~VTISnn~f~~H~k~~LiG~sd~~-~~d~~~~vTihhN~f~~~~~~R~Pr~R~G~~Hv~NN~y~~~~--~yai 304 (402)
||++++++||||||+|++|+|.+|+|.+|+. .+|++.+||+||||| +|+.||+||+|||.+||+||||.... .||+
T Consensus 180 Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~ 258 (345)
T COG3866 180 DIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAI 258 (345)
T ss_pred EeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeEEEEeccccccCcccceEE
Confidence 9999999999999999999999999999984 457889999999999 79999999999999999999999654 4666
Q ss_pred ccCCCceEEEEccEEecCCCCcccccccccCCCcccccCceeeccCceEEeCeEEecCCCCC------CCCCCCCCcccc
Q 015702 305 GGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPSGAGA------SSSYAKASSLGA 378 (402)
Q Consensus 305 gg~~~~~i~~egN~F~~~~~~~~k~vt~r~~~~~~~~~~w~w~s~Gd~~~nGa~f~~sg~~~------~~~~~~~~~~~~ 378 (402)
+-+..++|++|+|||+....+..---+++. + ..|. +-+|++|..++... +..++..++|++
T Consensus 259 ~iG~~AkiyvE~NyF~~~~~~~~f~dt~~~--~------GY~~-----~d~gsy~~~s~~~~~~~~G~~w~ps~~Y~Ytv 325 (345)
T COG3866 259 TIGTSAKIYVENNYFENGSEGLGFLDTKGT--S------GYAN-----QDSGSYLNSSKSMSVRAGGVTWNPSSYYSYTV 325 (345)
T ss_pred eeccceEEEEecceeccCCCCceeeecCCc--c------ceEE-----eccCceecccCCcccccCCccCCCCCCccccc
Confidence 655569999999999997554321112211 0 1121 03466666555432 334666788999
Q ss_pred CCCch-HhhhhcccCC
Q 015702 379 RPSSL-ISSITAGAGS 393 (402)
Q Consensus 379 ~~~~~-v~~~t~~AG~ 393 (402)
+|.+. .+.+|++||+
T Consensus 326 d~~~dVks~Vt~yAGa 341 (345)
T COG3866 326 DPPEDVKSFVTNYAGA 341 (345)
T ss_pred CChHHhhhhhhccccc
Confidence 97765 5778899995
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=1.9e-52 Score=391.00 Aligned_cols=191 Identities=41% Similarity=0.639 Sum_probs=159.3
Q ss_pred CCEEEEEeeeeEEeeCceEEeecCeeEeecCCceEEeCCceEEEE-eeecEEEEeeEEeecccCCCcccccCCCCCCCcc
Q 015702 119 EPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQ-YVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRT 197 (402)
Q Consensus 119 ~P~~IvF~~~g~I~L~~~L~v~snkTI~G~ga~~~I~~G~~i~i~-~a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~ 197 (402)
+|+ ||+++|+|+++.+|.|.|||||+|+|++++|. |+++.+. +++|||||||+|+++. ++..|...+...
T Consensus 1 ~~~--ii~~~g~i~~~~~i~v~snkTi~G~g~~~~i~-~~G~~i~~~~~NVIirNl~~~~~~------~~~~~~~~~~~~ 71 (200)
T PF00544_consen 1 EPL--IIKVSGTIDLKSPISVGSNKTIIGIGAGATII-GGGLRIIKGASNVIIRNLRFRNVP------VDPGPDWSGDGD 71 (200)
T ss_dssp S-E--EEEEHHCCHHHCEEEEESSEEEEEETTTTEEE-SSEEEEEESCEEEEEES-EEECEE------EECSTEEETTEE
T ss_pred CcE--EEEEEeEEccCCeEEECCCcEEEEccCCeEEE-CceEEEecCCCeEEEECCEEEecc------ccCCcccCCCcc
Confidence 355 55668899999999999999999999999999 6678886 9999999999999841 011111111122
Q ss_pred ccCCCcEEEeCCceEEEEeeEecCC--------CCCeeEeeeCCceEEEEcceecccCeeeecCCCCcccCCCcceEEEE
Q 015702 198 ISDGDGVSIFGGSHVWVDHCSLSNC--------NDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIA 269 (402)
Q Consensus 198 ~~~gDaI~i~gs~nVWIDHcs~s~~--------~DgliDv~~~s~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTih 269 (402)
..++|+|+|++++|||||||+|+|+ .||++|+++++++||||||+|++|+|+||+|++|+...|..++||||
T Consensus 72 ~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~h 151 (200)
T PF00544_consen 72 SSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFH 151 (200)
T ss_dssp ECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEE
T ss_pred ccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEE
Confidence 3689999999999999999999999 99999999999999999999999999999999988877777999999
Q ss_pred ceeecCCCcCCCccccCceEEEEcCeeeCCcceeeccCCCceEEEEccEE
Q 015702 270 FNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRF 319 (402)
Q Consensus 270 hN~f~~~~~~R~Pr~R~G~~Hv~NN~y~~~~~yaigg~~~~~i~~egN~F 319 (402)
|||| .++.+||||+|+|++|+|||||+++..|+++.++++++++|+|||
T Consensus 152 hN~f-~~~~~R~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 152 HNYF-ANTNSRNPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp S-EE-EEEEE-TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred eEEE-CchhhCCCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 9999 589999999999999999999999999999999999999999999
No 3
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=8.4e-49 Score=363.94 Aligned_cols=171 Identities=58% Similarity=0.892 Sum_probs=158.9
Q ss_pred ceEEeecCeeEeecCCceEEeCCceEEEEeeecEEEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEeCCceEEE
Q 015702 135 EELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWV 214 (402)
Q Consensus 135 ~~L~v~snkTI~G~ga~~~I~~G~~i~i~~a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~gs~nVWI 214 (402)
.+|.|+|||||+|+|+++.|. |++|+++.++|||||||+|++..+. + ..++|+|++.+++||||
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~-g~gl~i~~~~NVIirnl~i~~~~~~-----------~----~~~~D~i~~~~~~~VwI 73 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIK-GGGLTIKSVSNVIIRNLTIHDPKPV-----------Y----GSDGDAISIDGSSNVWI 73 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEE-eeEEEEEecceEEEeCCEEECCccC-----------C----CCCCCEEEEeCCCeEEE
Confidence 578899999999999999998 7899999999999999999976543 1 14789999999999999
Q ss_pred EeeEecCC---------CCCeeEeeeCCceEEEEcceecccCeeeecCCCCcccCCCcceEEEEceeecCCCcCCCcccc
Q 015702 215 DHCSLSNC---------NDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCR 285 (402)
Q Consensus 215 DHcs~s~~---------~DgliDv~~~s~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTihhN~f~~~~~~R~Pr~R 285 (402)
|||+|+|. .|+++|+++++++||||||+|.+|+|++|+|++|++..+..++||+|||||. ++.+|+||+|
T Consensus 74 DHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~-~~~~R~P~~r 152 (190)
T smart00656 74 DHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPRVR 152 (190)
T ss_pred EccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEc-CcccCCCccc
Confidence 99999998 8999999999999999999999999999999999877667899999999995 7999999999
Q ss_pred CceEEEEcCeeeCCcceeeccCCCceEEEEccEEecC
Q 015702 286 HGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAP 322 (402)
Q Consensus 286 ~G~~Hv~NN~y~~~~~yaigg~~~~~i~~egN~F~~~ 322 (402)
+|++|+|||||++|..|+++.+.++++++|+|||+..
T Consensus 153 ~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 153 FGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred CCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 9999999999999999999999999999999999875
No 4
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.84 E-value=5.7e-07 Score=90.09 Aligned_cols=154 Identities=13% Similarity=0.129 Sum_probs=90.9
Q ss_pred cCCCcEEEeCCceEEEEeeEecCCCCCeeEeeeCCceEEEEcceecccCeeeecCCCCcccCCCcceEEEEceeecCCCc
Q 015702 199 SDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLV 278 (402)
Q Consensus 199 ~~gDaI~i~gs~nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTihhN~f~~~~~ 278 (402)
..++||.+..++++-|.+|.++...|--|-+ ..|++++|++|.+.+-..+..+-.+. ++.+.+|.+-. +.
T Consensus 105 ~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv-~~s~~~~v~nN~~~~n~~GI~i~~S~--------~~~v~~N~~~~-N~ 174 (314)
T TIGR03805 105 NGAYGIYPVESTNVLVEDSYVRGASDAGIYV-GQSQNIVVRNNVAEENVAGIEIENSQ--------NADVYNNIATN-NT 174 (314)
T ss_pred CCcceEEEeccCCEEEECCEEECCCcccEEE-CCCCCeEEECCEEccCcceEEEEecC--------CcEEECCEEec-cc
Confidence 3578899999999999999999887744433 46889999999998655555554432 46677777632 22
Q ss_pred CCC--------ccccCceEEEEcCeeeCCcc----------------eeeccCCCceEEEEccEEecCCCCccccccccc
Q 015702 279 QRM--------PRCRHGYFHVVNNDYTHWEM----------------YALGGSASPTINSQGNRFVAPNDRFNKEVTKYE 334 (402)
Q Consensus 279 ~R~--------Pr~R~G~~Hv~NN~y~~~~~----------------yaigg~~~~~i~~egN~F~~~~~~~~k~vt~r~ 334 (402)
.-. |.+-...+.+.||.+.+-.. .+|-......+.+++|.|..-.....--+....
T Consensus 175 ~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~~~~~ 254 (314)
T TIGR03805 175 GGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVMANRDVEIFGNVISNNDTANVLISSYHS 254 (314)
T ss_pred eeEEEeecCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEEEcccceEEECCEEeCCcceeEEEEeccc
Confidence 111 11212356677777653210 111112235678899999876654311111110
Q ss_pred -C----CCcccccCceeeccCceEEeCeEEecCCCCC
Q 015702 335 -D----APESEWKNWNWRSEGDLMVNGAFFTPSGAGA 366 (402)
Q Consensus 335 -~----~~~~~~~~w~w~s~Gd~~~nGa~f~~sg~~~ 366 (402)
+ +.+..|..+ ..++.+-+|.|...|..+
T Consensus 255 ~~~~~~~~~~~~~~~----~~~v~i~~N~~~~~g~~p 287 (314)
T TIGR03805 255 TGLPDQPPDDGFDPY----PRNISIHDNTFSDGGTNP 287 (314)
T ss_pred ccCCCCCcCCCccCC----CcceEEEccEeecCCCCC
Confidence 0 112223332 267788899998888644
No 5
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.41 E-value=5.6e-06 Score=85.82 Aligned_cols=165 Identities=18% Similarity=0.231 Sum_probs=70.8
Q ss_pred hHHHhhhcCCCEEEEEeeeeEEeeCceEEe-e-----cCeeEeecC-CceEEeCCceEEEEeeecEEEEeeEEeecccCC
Q 015702 110 TLRYAVIQDEPLWIIFARDMVITLKEELIM-N-----SFKTIDGRG-ASVHIAGGPCITVQYVTNIIIHGINIHDCKRGG 182 (402)
Q Consensus 110 tLr~av~~~~P~~IvF~~~g~I~L~~~L~v-~-----snkTI~G~g-a~~~I~~G~~i~i~~a~NVIIrnl~i~~~~~g~ 182 (402)
+|..||.+-.|=--|+=.+|+-+ ..+|.+ + .-+||..+. ..+.|.+..+|++. .+.++|.+|.|++..+..
T Consensus 6 ~lq~Ai~~a~pGD~I~L~~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i~-G~yl~v~GL~F~ng~~~~ 83 (425)
T PF14592_consen 6 ELQSAIDNAKPGDTIVLADGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRIS-GSYLVVSGLKFKNGYTPT 83 (425)
T ss_dssp HHHHHHHH--TT-EEEE-SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES-EEEEE---T
T ss_pred HHHHHHHhCCCCCEEEECCceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEEE-eeeEEEeCeEEecCCCCC
Confidence 38888876555322222344444 223433 2 237777763 34667766678875 799999999999865433
Q ss_pred CcccccCC-------CCC--------CCcc-ccCCCcEEE-----eCCceEEEEeeEecCC-CCC-eeEee-------eC
Q 015702 183 NANVRDSP-------SHY--------GWRT-ISDGDGVSI-----FGGSHVWVDHCSLSNC-NDG-LIDAI-------HG 232 (402)
Q Consensus 183 ~~~i~~s~-------~~~--------g~~~-~~~gDaI~i-----~gs~nVWIDHcs~s~~-~Dg-liDv~-------~~ 232 (402)
...|.... .+. .+.. ..+.+...+ +|.+|. ||||+|..- ..| .|-+. .-
T Consensus 84 ~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~Nr-vDhn~F~gK~~~G~~l~V~~~~~~~~~~ 162 (425)
T PF14592_consen 84 GAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNR-VDHNYFQGKTNRGPTLAVRVILNGSQSI 162 (425)
T ss_dssp TT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-E-EES-EEE---SSS-SEEE--S--SS---
T ss_pred CceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCce-EEccEeeccccCCcEEEEEecccCcccc
Confidence 22221110 000 0000 011122333 444444 899999984 233 23222 12
Q ss_pred CceEEEEcceecc-------cCeeeecCCCCcccCCCcceEEEEceeecCCCcCC
Q 015702 233 STAITISNNYMTH-------HNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQR 280 (402)
Q Consensus 233 s~~VTISnn~f~~-------H~k~~LiG~sd~~~~d~~~~vTihhN~f~~~~~~R 280 (402)
..+-+|.+|+|.+ ...++.||.|...-.+ -+.++.||+| ++|.+-
T Consensus 163 ~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~--s~t~Ve~NlF-e~cdGE 214 (425)
T PF14592_consen 163 ANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSD--SNTTVENNLF-ERCDGE 214 (425)
T ss_dssp ----EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EE-EEE-SS
T ss_pred ccCceEEeccccccCCCCCCCceeEEEecccccccc--cceeeecchh-hhcCCc
Confidence 3477999999984 4578889987654333 3789999999 567765
No 6
>PLN02218 polygalacturonase ADPG
Probab=98.09 E-value=0.00011 Score=76.87 Aligned_cols=136 Identities=15% Similarity=0.188 Sum_probs=90.8
Q ss_pred eEEEEeeecEEEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEeCCceEEEEeeEecCCCCCeeEeeeCCceEEE
Q 015702 159 CITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITI 238 (402)
Q Consensus 159 ~i~i~~a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~gs~nVWIDHcs~s~~~DgliDv~~~s~~VTI 238 (402)
.|.+..++||.|+||+|.. |+. ....|||.+.+++||.|.+|.++.+ |.+|.++.++++|+|
T Consensus 217 ~i~~~~~~nV~i~~v~I~a--~~~---------------spNTDGIdi~ss~nV~I~n~~I~tG-DDcIaIksgs~nI~I 278 (431)
T PLN02218 217 QISIEKCSNVQVSNVVVTA--PAD---------------SPNTDGIHITNTQNIRVSNSIIGTG-DDCISIESGSQNVQI 278 (431)
T ss_pred EEEEEceeeEEEEEEEEeC--CCC---------------CCCCCcEeecccceEEEEccEEecC-CceEEecCCCceEEE
Confidence 3445677888888888863 211 1367999999999999999999877 668899999999999
Q ss_pred EcceecccCeeeecCCCCccc-CCCcceEEEEceeecCCCcCCCcccc---CceEEEEcCeeeCCcceeeccCCCceEEE
Q 015702 239 SNNYMTHHNKVMLLGHSDTFT-QDKNMQVTIAFNHFGEGLVQRMPRCR---HGYFHVVNNDYTHWEMYALGGSASPTINS 314 (402)
Q Consensus 239 Snn~f~~H~k~~LiG~sd~~~-~d~~~~vTihhN~f~~~~~~R~Pr~R---~G~~Hv~NN~y~~~~~yaigg~~~~~i~~ 314 (402)
++|.+.. ..++-||+--.+. .+..-+|++.++.| .+ ..+.=|++ .|.-.+-|=.|.+..|-.+. .| |.+
T Consensus 279 ~n~~c~~-GHGisIGS~g~~~~~~~V~nV~v~n~~~-~~-t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~---~p-I~I 351 (431)
T PLN02218 279 NDITCGP-GHGISIGSLGDDNSKAFVSGVTVDGAKL-SG-TDNGVRIKTYQGGSGTASNIIFQNIQMENVK---NP-III 351 (431)
T ss_pred EeEEEEC-CCCEEECcCCCCCCCceEEEEEEEccEE-ec-CCcceEEeecCCCCeEEEEEEEEeEEEEccc---cc-EEE
Confidence 9999953 3456688643222 23456899999998 33 34555554 23334555555555444332 23 445
Q ss_pred EccEE
Q 015702 315 QGNRF 319 (402)
Q Consensus 315 egN~F 319 (402)
..+|.
T Consensus 352 dq~Y~ 356 (431)
T PLN02218 352 DQDYC 356 (431)
T ss_pred Eeecc
Confidence 55543
No 7
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=97.93 E-value=0.00027 Score=73.43 Aligned_cols=123 Identities=17% Similarity=0.221 Sum_probs=84.3
Q ss_pred ceEEEEeeecEEEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEeCCceEEEEeeEecCCCCCeeEeeeCCceEE
Q 015702 158 PCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAIT 237 (402)
Q Consensus 158 ~~i~i~~a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~gs~nVWIDHcs~s~~~DgliDv~~~s~~VT 237 (402)
..|.+..++||.|++|+|.. |.. ....|||.+..++||+|.+|.+...-| .|.++.++++|+
T Consensus 179 w~i~~~~~~~v~i~~v~I~~--~~~---------------spNtDGidi~~s~nV~I~n~~I~~GDD-cIaiksg~~nI~ 240 (404)
T PLN02188 179 FHIALVECRNFKGSGLKISA--PSD---------------SPNTDGIHIERSSGVYISDSRIGTGDD-CISIGQGNSQVT 240 (404)
T ss_pred eEEEEEccccEEEEEEEEeC--CCC---------------CCCCCcEeeeCcccEEEEeeEEeCCCc-EEEEccCCccEE
Confidence 45666788889999998864 210 136799999999999999999987766 788888999999
Q ss_pred EEcceecccCeeeecCCCCcc-cCCCcceEEEEceeecCCCcCCCcccc-----CceEEEEcCeeeCCcc
Q 015702 238 ISNNYMTHHNKVMLLGHSDTF-TQDKNMQVTIAFNHFGEGLVQRMPRCR-----HGYFHVVNNDYTHWEM 301 (402)
Q Consensus 238 ISnn~f~~H~k~~LiG~sd~~-~~d~~~~vTihhN~f~~~~~~R~Pr~R-----~G~~Hv~NN~y~~~~~ 301 (402)
|+|+.+.. ..++-+|+--.+ .......|++.++.|. + ..+.=|++ .|...+-|=.|.|..|
T Consensus 241 I~n~~c~~-ghGisiGSlG~~~~~~~V~nV~v~n~~~~-~-t~~GiriKt~~g~~~~G~v~nI~f~ni~m 307 (404)
T PLN02188 241 ITRIRCGP-GHGISVGSLGRYPNEGDVTGLVVRDCTFT-G-TTNGIRIKTWANSPGKSAATNMTFENIVM 307 (404)
T ss_pred EEEEEEcC-CCcEEeCCCCCCCcCCcEEEEEEEeeEEE-C-CCcEEEEEEecCCCCceEEEEEEEEeEEe
Confidence 99998853 345667763221 2233568999999994 3 34444553 1223344445555443
No 8
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.90 E-value=0.00029 Score=74.16 Aligned_cols=165 Identities=18% Similarity=0.247 Sum_probs=98.4
Q ss_pred CEEEEEeeeeEEeeCceEEeecCeeEeecCCceEE---eCCceEEEEeeecEEEEeeEEeecccC-------CC----cc
Q 015702 120 PLWIIFARDMVITLKEELIMNSFKTIDGRGASVHI---AGGPCITVQYVTNIIIHGINIHDCKRG-------GN----AN 185 (402)
Q Consensus 120 P~~IvF~~~g~I~L~~~L~v~snkTI~G~ga~~~I---~~G~~i~i~~a~NVIIrnl~i~~~~~g-------~~----~~ 185 (402)
..||.|..- +.|.|...=||+|+|..-.- ..-..|++.+++|+.|++|++++.... .+ ++
T Consensus 104 ~~wI~f~~~------~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i~~c~nV~i~~l 177 (456)
T PLN03003 104 DQWILFTDI------EGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSL 177 (456)
T ss_pred cceEEEEcc------cceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCcEEEEEeccccEEEEEE
Confidence 347877532 23555444588888753110 001135556666666666666543210 00 00
Q ss_pred cccCCCCCCCccccCCCcEEEeCCceEEEEeeEecCCCCCeeEeeeCCceEEEEcceecccCeeeecCCCCccc-CCCcc
Q 015702 186 VRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFT-QDKNM 264 (402)
Q Consensus 186 i~~s~~~~g~~~~~~gDaI~i~gs~nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~f~~H~k~~LiG~sd~~~-~d~~~ 264 (402)
...+|.. ....|||.+..++||+|.+|.++.+ |.+|.++.++++|+|+++.+.. ..++-||+--++. .+...
T Consensus 178 ~I~ap~~-----spNTDGIDi~~S~nV~I~n~~I~tG-DDCIaiksgs~NI~I~n~~c~~-GHGISIGSlg~~g~~~~V~ 250 (456)
T PLN03003 178 RINAPES-----SPNTDGIDVGASSNVVIQDCIIATG-DDCIAINSGTSNIHISGIDCGP-GHGISIGSLGKDGETATVE 250 (456)
T ss_pred EEeCCCC-----CCCCCcEeecCcceEEEEecEEecC-CCeEEeCCCCccEEEEeeEEEC-CCCeEEeeccCCCCcceEE
Confidence 0112211 1367999999999999999999866 6678889999999999999864 2356677643322 23467
Q ss_pred eEEEEceeecCCCcCCCcccc---CceEEEEcCeeeCC
Q 015702 265 QVTIAFNHFGEGLVQRMPRCR---HGYFHVVNNDYTHW 299 (402)
Q Consensus 265 ~vTihhN~f~~~~~~R~Pr~R---~G~~Hv~NN~y~~~ 299 (402)
+|++.++.|. ++ .+.=|++ .|.-.+-|=.|.|.
T Consensus 251 NV~v~n~~~~-~T-~nGvRIKT~~Gg~G~v~nItf~nI 286 (456)
T PLN03003 251 NVCVQNCNFR-GT-MNGARIKTWQGGSGYARMITFNGI 286 (456)
T ss_pred EEEEEeeEEE-CC-CcEEEEEEeCCCCeEEEEEEEEeE
Confidence 8999999993 43 4444664 23233444444443
No 9
>PLN02793 Probable polygalacturonase
Probab=97.89 E-value=0.0003 Score=73.87 Aligned_cols=106 Identities=15% Similarity=0.190 Sum_probs=75.0
Q ss_pred eEEEEeeecEEEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEeCCceEEEEeeEecCCCCCeeEeeeCCceEEE
Q 015702 159 CITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITI 238 (402)
Q Consensus 159 ~i~i~~a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~gs~nVWIDHcs~s~~~DgliDv~~~s~~VTI 238 (402)
.|.+..++||.|++|+|.. |. . ....|||.+..++||+|.+|.+... |..|.++.++++|+|
T Consensus 202 ~i~~~~~~nv~i~~l~I~~--p~----------~-----spNTDGIdi~~s~nV~I~n~~I~~g-DDcIaik~~s~nI~I 263 (443)
T PLN02793 202 HIAFTNCRRVTISGLKVIA--PA----------T-----SPNTDGIHISASRGVVIKDSIVRTG-DDCISIVGNSSRIKI 263 (443)
T ss_pred EEEEEccCcEEEEEEEEEC--CC----------C-----CCCCCcEeeeccceEEEEeCEEeCC-CCeEEecCCcCCEEE
Confidence 3455677788888888764 11 0 1367999999999999999998855 668888889999999
Q ss_pred EcceecccCeeeecCCCCcc-cCCCcceEEEEceeecCCCcCCCcccc
Q 015702 239 SNNYMTHHNKVMLLGHSDTF-TQDKNMQVTIAFNHFGEGLVQRMPRCR 285 (402)
Q Consensus 239 Snn~f~~H~k~~LiG~sd~~-~~d~~~~vTihhN~f~~~~~~R~Pr~R 285 (402)
+||.+.. ..+.-||+--.+ .......|++.++.|. + ..+.=|++
T Consensus 264 ~n~~c~~-GhGisIGSlg~~~~~~~V~nV~v~n~~~~-~-t~~GirIK 308 (443)
T PLN02793 264 RNIACGP-GHGISIGSLGKSNSWSEVRDITVDGAFLS-N-TDNGVRIK 308 (443)
T ss_pred EEeEEeC-CccEEEecccCcCCCCcEEEEEEEccEEe-C-CCceEEEE
Confidence 9999854 234667863221 2233567999999983 3 34555554
No 10
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=97.88 E-value=0.00032 Score=70.37 Aligned_cols=155 Identities=15% Similarity=0.075 Sum_probs=95.4
Q ss_pred ecCeeEeecCCceEEeCCceEEEEeeecEEEEeeEEeecc--------------cCCCcccccCCCCCCCccccCCCcEE
Q 015702 140 NSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCK--------------RGGNANVRDSPSHYGWRTISDGDGVS 205 (402)
Q Consensus 140 ~snkTI~G~ga~~~I~~G~~i~i~~a~NVIIrnl~i~~~~--------------~g~~~~i~~s~~~~g~~~~~~gDaI~ 205 (402)
.+++||.|.+-.. ..+.+|.++.++|++|+++++.... ...+..|++..-+ ....+||.
T Consensus 62 a~~VtI~~ltI~~--~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~-----g~~d~GIy 134 (314)
T TIGR03805 62 SDDVTLSDLAVEN--TKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVR-----GASDAGIY 134 (314)
T ss_pred eCCeEEEeeEEEc--CCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEE-----CCCcccEE
Confidence 6677777663211 1245677888999999999986211 0111122221100 12335899
Q ss_pred EeCCceEEEEeeEecCCCCCeeEeeeCCceEEEEcceecccCeeeecCCCCcccCCCcceEEEEceeecCCCcCCCcc--
Q 015702 206 IFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPR-- 283 (402)
Q Consensus 206 i~gs~nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTihhN~f~~~~~~R~Pr-- 283 (402)
+..++++.|-+|.+.....|+-- ..|.++.|.+|.+.+-.-+.++-..+....-...++++++|.|.. ....+..
T Consensus 135 v~~s~~~~v~nN~~~~n~~GI~i--~~S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~-n~~~n~~~~ 211 (314)
T TIGR03805 135 VGQSQNIVVRNNVAEENVAGIEI--ENSQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFD-NNTPNFAPA 211 (314)
T ss_pred ECCCCCeEEECCEEccCcceEEE--EecCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEEC-CCCCCCccc
Confidence 99999999999999988877642 458899999999998666666632221111113489999999953 3322111
Q ss_pred ------ccC--c-------eEEEEcCeeeCCcceee
Q 015702 284 ------CRH--G-------YFHVVNNDYTHWEMYAL 304 (402)
Q Consensus 284 ------~R~--G-------~~Hv~NN~y~~~~~yai 304 (402)
+.. | .+.++||.+.+-...++
T Consensus 212 gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i 247 (314)
T TIGR03805 212 GSIVASVPAGTGVVVMANRDVEIFGNVISNNDTANV 247 (314)
T ss_pred CCceecCCCCcEEEEEcccceEEECCEEeCCcceeE
Confidence 111 2 46899999987544443
No 11
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.84 E-value=0.00018 Score=62.00 Aligned_cols=133 Identities=21% Similarity=0.309 Sum_probs=82.0
Q ss_pred eEEEEeeecEEEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEeCCceEEEEeeEecCCCCCeeEeeeCCceEEE
Q 015702 159 CITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITI 238 (402)
Q Consensus 159 ~i~i~~a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~gs~nVWIDHcs~s~~~DgliDv~~~s~~VTI 238 (402)
+|.+....++.|++.+|+++ .++||.+.++..+.|+.|+|.....|+ .+ .+..++++
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~---------------------~~~gi~~~~~~~~~i~n~~i~~~~~gi-~~-~~~~~~~i 58 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNN---------------------GGDGIHVSGSSNITIENCTISNGGYGI-YV-SGGSNVTI 58 (158)
T ss_dssp CEEETTCEC-EEESEEEESS---------------------SSECEEE-SSCESEEES-EEESSTTSE-EE-ECCES-EE
T ss_pred EEEEECCcCeEEeeeEEEeC---------------------CCeEEEEEcCCCeEEECeEEECCCcEE-EE-ecCCCeEE
Confidence 36777889999999999853 578899999999999999999954544 43 45689999
Q ss_pred EcceecccCeeeecCCCCcccCCCcceEEEEceeecCCCcCCCcccc--CceEEEEcCeeeCCcceeecc--CCCceEEE
Q 015702 239 SNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCR--HGYFHVVNNDYTHWEMYALGG--SASPTINS 314 (402)
Q Consensus 239 Snn~f~~H~k~~LiG~sd~~~~d~~~~vTihhN~f~~~~~~R~Pr~R--~G~~Hv~NN~y~~~~~yaigg--~~~~~i~~ 314 (402)
++|.|.+......+-.+. .+++.+|.|. ++..-.=.+. ...+.+.||.+.+-..+++-. ...+.+.+
T Consensus 59 ~~~~~~~~~~~i~~~~~~--------~~~i~~~~i~-~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i 129 (158)
T PF13229_consen 59 SNNTISDNGSGIYVSGSS--------NITIENNRIE-NNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTI 129 (158)
T ss_dssp ES-EEES-SEEEECCS-C--------S-EEES-EEE-CSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EE
T ss_pred ECeEEEEccceEEEEecC--------CceecCcEEE-cCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEE
Confidence 999999887444433222 6888899884 3433222222 235778888888755444422 22458888
Q ss_pred EccEEecCC
Q 015702 315 QGNRFVAPN 323 (402)
Q Consensus 315 egN~F~~~~ 323 (402)
++|.|....
T Consensus 130 ~~n~i~~~~ 138 (158)
T PF13229_consen 130 ENNTISNNG 138 (158)
T ss_dssp ECEEEECES
T ss_pred EEEEEEeCc
Confidence 999997654
No 12
>PLN02155 polygalacturonase
Probab=97.74 E-value=0.00065 Score=70.38 Aligned_cols=123 Identities=17% Similarity=0.181 Sum_probs=87.0
Q ss_pred ceEEEEeeecEEEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEeCCceEEEEeeEecCCCCCeeEeeeCCceEE
Q 015702 158 PCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAIT 237 (402)
Q Consensus 158 ~~i~i~~a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~gs~nVWIDHcs~s~~~DgliDv~~~s~~VT 237 (402)
..|.+..++||.|+||+|.. |+. ....|||.+..++||+|.+|.+..+-| .|.++.++++|+
T Consensus 169 w~i~~~~~~nv~i~~v~I~~--p~~---------------~~NtDGidi~~s~nV~I~~~~I~~gDD-cIaik~gs~nI~ 230 (394)
T PLN02155 169 SHMTLNGCTNVVVRNVKLVA--PGN---------------SPNTDGFHVQFSTGVTFTGSTVQTGDD-CVAIGPGTRNFL 230 (394)
T ss_pred eEEEEECeeeEEEEEEEEEC--CCC---------------CCCCCccccccceeEEEEeeEEecCCc-eEEcCCCCceEE
Confidence 45667789999999999974 221 135799999999999999999987766 778888999999
Q ss_pred EEcceecccCeeeecCCCCcc-cCCCcceEEEEceeecCCCcCCCccccC----ceEEEEcCeeeCCcc
Q 015702 238 ISNNYMTHHNKVMLLGHSDTF-TQDKNMQVTIAFNHFGEGLVQRMPRCRH----GYFHVVNNDYTHWEM 301 (402)
Q Consensus 238 ISnn~f~~H~k~~LiG~sd~~-~~d~~~~vTihhN~f~~~~~~R~Pr~R~----G~~Hv~NN~y~~~~~ 301 (402)
|++|.+.. ..++-||+--.+ +.....+|++.++.|. +. .+.=|++. +.-.|-|=.|.+..|
T Consensus 231 I~n~~c~~-GhGisIGS~g~~~~~~~V~nV~v~n~~~~-~t-~~GirIKT~~~~~gG~v~nI~f~ni~m 296 (394)
T PLN02155 231 ITKLACGP-GHGVSIGSLAKELNEDGVENVTVSSSVFT-GS-QNGVRIKSWARPSTGFVRNVFFQDLVM 296 (394)
T ss_pred EEEEEEEC-CceEEeccccccCCCCcEEEEEEEeeEEe-CC-CcEEEEEEecCCCCEEEEEEEEEeEEE
Confidence 99998874 335678874322 2344568999999993 33 44445531 123445555555544
No 13
>PLN03010 polygalacturonase
Probab=97.63 E-value=0.0033 Score=65.51 Aligned_cols=99 Identities=16% Similarity=0.184 Sum_probs=66.2
Q ss_pred cCCCcEEEeCCceEEEEeeEecCCCCCeeEeeeCCceEEEEcceecccCeeeecCCCCcc-cCCCcceEEEEceeecCCC
Q 015702 199 SDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTF-TQDKNMQVTIAFNHFGEGL 277 (402)
Q Consensus 199 ~~gDaI~i~gs~nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~f~~H~k~~LiG~sd~~-~~d~~~~vTihhN~f~~~~ 277 (402)
...|||.+..++||+|.+|.+... |..|.++.++++++|.++.... ..++-||+--.. ..+....|++.++.|. +
T Consensus 205 ~NTDGiDi~~s~nV~I~n~~I~~g-DDcIaiksgs~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~-~- 280 (409)
T PLN03010 205 PNTDGIDISYSTNINIFDSTIQTG-DDCIAINSGSSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHCTFN-Q- 280 (409)
T ss_pred CCCCceeeeccceEEEEeeEEecC-CCeEEecCCCCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEEe-C-
Confidence 367999999999999999998877 7788888888888887666642 224556754222 2234568999999984 3
Q ss_pred cCCCcccc---CceEEEEcCeeeCCcc
Q 015702 278 VQRMPRCR---HGYFHVVNNDYTHWEM 301 (402)
Q Consensus 278 ~~R~Pr~R---~G~~Hv~NN~y~~~~~ 301 (402)
..+.=|++ .|.-.+-|=.|.+..|
T Consensus 281 t~~GirIKt~~G~~G~v~nItf~nI~m 307 (409)
T PLN03010 281 TTNGARIKTWQGGQGYARNISFENITL 307 (409)
T ss_pred CCcceEEEEecCCCEEEEEeEEEeEEE
Confidence 33444554 2333455555555544
No 14
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.57 E-value=0.00085 Score=67.52 Aligned_cols=151 Identities=21% Similarity=0.201 Sum_probs=96.2
Q ss_pred CCCEEEEEeeeeEEeeCceEEeecCeeEeecCCceEEeCCceEEEEeeecEEEEeeEEeecccCCCcccccCCCCCCCcc
Q 015702 118 DEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRT 197 (402)
Q Consensus 118 ~~P~~IvF~~~g~I~L~~~L~v~snkTI~G~ga~~~I~~G~~i~i~~a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~ 197 (402)
..|+.|.|...-.+.++ ++||. -+| ...+.+..++||.|++|+|+....
T Consensus 90 ~rp~~i~~~~~~~~~i~-------~i~~~--nsp-----~w~~~~~~~~nv~i~~i~I~~~~~----------------- 138 (326)
T PF00295_consen 90 RRPRLIRFNNCKNVTIE-------GITIR--NSP-----FWHIHINDCDNVTISNITINNPAN----------------- 138 (326)
T ss_dssp SSSESEEEEEEEEEEEE-------SEEEE--S-S-----SESEEEESEEEEEEESEEEEEGGG-----------------
T ss_pred cccceeeeeeecceEEE-------eeEec--CCC-----eeEEEEEccCCeEEcceEEEecCC-----------------
Confidence 56888888654222222 23332 233 456788899999999999986321
Q ss_pred ccCCCcEEEeCCceEEEEeeEecCCCCCeeEeeeCCceEEEEcceecccCeeeecCCCCccc-CCCcceEEEEceeecCC
Q 015702 198 ISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFT-QDKNMQVTIAFNHFGEG 276 (402)
Q Consensus 198 ~~~gDaI~i~gs~nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~f~~H~k~~LiG~sd~~~-~d~~~~vTihhN~f~~~ 276 (402)
....|||.+.+++||.|++|.+... |..|.++.++.+|+|+||.|.. ..++-+|+--... ....-.|+|.++.|. +
T Consensus 139 ~~NtDGid~~~s~nv~I~n~~i~~g-DD~Iaiks~~~ni~v~n~~~~~-ghGisiGS~~~~~~~~~i~nV~~~n~~i~-~ 215 (326)
T PF00295_consen 139 SPNTDGIDIDSSKNVTIENCFIDNG-DDCIAIKSGSGNILVENCTCSG-GHGISIGSEGSGGSQNDIRNVTFENCTII-N 215 (326)
T ss_dssp CTS--SEEEESEEEEEEESEEEESS-SESEEESSEECEEEEESEEEES-SSEEEEEEESSSSE--EEEEEEEEEEEEE-S
T ss_pred CCCcceEEEEeeeEEEEEEeecccc-cCcccccccccceEEEeEEEec-cccceeeeccCCccccEEEeEEEEEEEee-c
Confidence 1367999999999999999999776 6677888778899999999974 3346666432211 112357999999884 3
Q ss_pred CcCCCcccc---CceEEEEcCeeeCCccee
Q 015702 277 LVQRMPRCR---HGYFHVVNNDYTHWEMYA 303 (402)
Q Consensus 277 ~~~R~Pr~R---~G~~Hv~NN~y~~~~~ya 303 (402)
..|.-|++ .+.-.+-|=.|++..+..
T Consensus 216 -t~~gi~iKt~~~~~G~v~nI~f~ni~~~~ 244 (326)
T PF00295_consen 216 -TDNGIRIKTWPGGGGYVSNITFENITMEN 244 (326)
T ss_dssp -ESEEEEEEEETTTSEEEEEEEEEEEEEEE
T ss_pred -cceEEEEEEecccceEEeceEEEEEEecC
Confidence 34555553 122334444455544433
No 15
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.48 E-value=0.0076 Score=57.11 Aligned_cols=85 Identities=24% Similarity=0.266 Sum_probs=53.8
Q ss_pred CcEEEeCCceEEEEeeEecCCCCCeeEeeeCCceEEEEcceecccCeeeecCCCCcccCCCcceEEEEceeecCCCcCCC
Q 015702 202 DGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRM 281 (402)
Q Consensus 202 DaI~i~gs~nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTihhN~f~~~~~~R~ 281 (402)
.||.+..+.+..|..+.|+....|.. ...+...+|++|.|.+...++.+-.+. +.++.+|.|. ++..--
T Consensus 80 ~Gi~l~~s~~~~I~~N~i~~n~~GI~--l~~s~~~~I~~N~i~~~~~GI~l~~s~--------~n~I~~N~i~-~n~~~G 148 (236)
T PF05048_consen 80 YGIYLMGSSNNTISNNTISNNGYGIY--LYGSSNNTISNNTISNNGYGIYLSSSS--------NNTITGNTIS-NNTDYG 148 (236)
T ss_pred CCEEEEcCCCcEEECCEecCCCceEE--EeeCCceEEECcEEeCCCEEEEEEeCC--------CCEEECeEEe-CCCccc
Confidence 77888877766888888888777553 245677888888887666666665442 5677777774 231222
Q ss_pred cc-cc-CceEEEEcCeee
Q 015702 282 PR-CR-HGYFHVVNNDYT 297 (402)
Q Consensus 282 Pr-~R-~G~~Hv~NN~y~ 297 (402)
-. +. .....+++|.|.
T Consensus 149 i~~~~~s~~n~I~~N~f~ 166 (236)
T PF05048_consen 149 IYFLSGSSGNTIYNNNFN 166 (236)
T ss_pred eEEeccCCCCEEECCCcc
Confidence 22 11 134567777773
No 16
>PLN02218 polygalacturonase ADPG
Probab=97.42 E-value=0.0079 Score=63.14 Aligned_cols=120 Identities=18% Similarity=0.311 Sum_probs=83.2
Q ss_pred CEEEEEeeeeEEeeCceEEeec--CeeEeecCCceE-----Ee------CC-ceEEEEeeecEEEEeeEEeecccCCCcc
Q 015702 120 PLWIIFARDMVITLKEELIMNS--FKTIDGRGASVH-----IA------GG-PCITVQYVTNIIIHGINIHDCKRGGNAN 185 (402)
Q Consensus 120 P~~IvF~~~g~I~L~~~L~v~s--nkTI~G~ga~~~-----I~------~G-~~i~i~~a~NVIIrnl~i~~~~~g~~~~ 185 (402)
..||.|..- +.|.|.. .=||+|+|..-. .. .. ..|++.+++|+.|++|+|++.
T Consensus 147 ~~wi~~~~~------~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nS------- 213 (431)
T PLN02218 147 SKWIMFDGV------NNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNA------- 213 (431)
T ss_pred ccCEEEecC------cEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcC-------
Confidence 356666431 2355533 378888884210 00 01 136788999999999999863
Q ss_pred cccCCCCCCCccccCCCcEEEeCCceEEEEeeEecC-----CCCCeeEeeeCCceEEEEcceecccCeeeecCCCCcccC
Q 015702 186 VRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSN-----CNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQ 260 (402)
Q Consensus 186 i~~s~~~~g~~~~~~gDaI~i~gs~nVWIDHcs~s~-----~~DgliDv~~~s~~VTISnn~f~~H~k~~LiG~sd~~~~ 260 (402)
..=.|.+..++||.|++.++.. -.||. |+ ..+++|+|++|.|..-|...-|.+..
T Consensus 214 --------------p~w~i~~~~~~nV~i~~v~I~a~~~spNTDGI-di-~ss~nV~I~n~~I~tGDDcIaIksgs---- 273 (431)
T PLN02218 214 --------------QQIQISIEKCSNVQVSNVVVTAPADSPNTDGI-HI-TNTQNIRVSNSIIGTGDDCISIESGS---- 273 (431)
T ss_pred --------------CCEEEEEEceeeEEEEEEEEeCCCCCCCCCcE-ee-cccceEEEEccEEecCCceEEecCCC----
Confidence 1235888999999999999875 36664 64 56899999999999888777776532
Q ss_pred CCcceEEEEceeecC
Q 015702 261 DKNMQVTIAFNHFGE 275 (402)
Q Consensus 261 d~~~~vTihhN~f~~ 275 (402)
.+|++.++.++.
T Consensus 274 ---~nI~I~n~~c~~ 285 (431)
T PLN02218 274 ---QNVQINDITCGP 285 (431)
T ss_pred ---ceEEEEeEEEEC
Confidence 268888887743
No 17
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.39 E-value=0.002 Score=55.47 Aligned_cols=131 Identities=23% Similarity=0.243 Sum_probs=74.7
Q ss_pred CceEEEEeeecEEEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEeCCceEEEEeeEecCCCCCeeEeeeCCceE
Q 015702 157 GPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAI 236 (402)
Q Consensus 157 G~~i~i~~a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~gs~nVWIDHcs~s~~~DgliDv~~~s~~V 236 (402)
+.+|.+...+++.|++.+|++ .+.+|.+.+..++.|+.|.|+... ..+.+ ..+..+
T Consensus 23 ~~gi~~~~~~~~~i~n~~i~~----------------------~~~gi~~~~~~~~~i~~~~~~~~~-~~i~~-~~~~~~ 78 (158)
T PF13229_consen 23 GDGIHVSGSSNITIENCTISN----------------------GGYGIYVSGGSNVTISNNTISDNG-SGIYV-SGSSNI 78 (158)
T ss_dssp SECEEE-SSCESEEES-EEES----------------------STTSEEEECCES-EEES-EEES-S-EEEEC-CS-CS-
T ss_pred CeEEEEEcCCCeEEECeEEEC----------------------CCcEEEEecCCCeEEECeEEEEcc-ceEEE-EecCCc
Confidence 345777777778888888874 357788888899999999999888 44443 378899
Q ss_pred EEEcceecccCe-eeecCCCCcccCCCcceEEEEceeecCCCcCCCccccC-c--eEEEEcCeeeCCcceeeccCCCc-e
Q 015702 237 TISNNYMTHHNK-VMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRH-G--YFHVVNNDYTHWEMYALGGSASP-T 311 (402)
Q Consensus 237 TISnn~f~~H~k-~~LiG~sd~~~~d~~~~vTihhN~f~~~~~~R~Pr~R~-G--~~Hv~NN~y~~~~~yaigg~~~~-~ 311 (402)
+|.+|.|.+... ++.+.. ....+++.+|.|. ++.+..=.+.. . .+-+.+|.+++-..+++...... .
T Consensus 79 ~i~~~~i~~~~~~gi~~~~-------~~~~~~i~~n~~~-~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~ 150 (158)
T PF13229_consen 79 TIENNRIENNGDYGIYISN-------SSSNVTIENNTIH-NNGGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSN 150 (158)
T ss_dssp EEES-EEECSSS-SCE-TC-------EECS-EEES-EEE-CCTTSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS-
T ss_pred eecCcEEEcCCCccEEEec-------cCCCEEEEeEEEE-eCcceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCe
Confidence 999999988665 444442 1125888999984 33322222222 2 45568888887666777433333 3
Q ss_pred EEEEccEE
Q 015702 312 INSQGNRF 319 (402)
Q Consensus 312 i~~egN~F 319 (402)
+.+.+|.|
T Consensus 151 ~~v~~n~~ 158 (158)
T PF13229_consen 151 CTVTNNTF 158 (158)
T ss_dssp -EEES-E-
T ss_pred EEEECCCC
Confidence 67788876
No 18
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.21 E-value=0.0064 Score=55.89 Aligned_cols=152 Identities=21% Similarity=0.269 Sum_probs=76.7
Q ss_pred HHHhh--hc-CCCEEEEEeeeeEEeeCceEEeecCeeEeecCCceE-Ee---C---------------------------
Q 015702 111 LRYAV--IQ-DEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVH-IA---G--------------------------- 156 (402)
Q Consensus 111 Lr~av--~~-~~P~~IvF~~~g~I~L~~~L~v~snkTI~G~ga~~~-I~---~--------------------------- 156 (402)
|..|+ .+ .+..+|.|- .|+-.++++|.+.+++||.|.|.... +. .
T Consensus 21 iq~Ai~~~~~~~g~~v~~P-~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~nl 99 (225)
T PF12708_consen 21 IQAAIDAAAAAGGGVVYFP-PGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFSVVPGIGVFDSGNSNIGIQIRNL 99 (225)
T ss_dssp HHHHHHHHCSTTSEEEEE--SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSCCEEEEEECCSCSCCEEEEEEEE
T ss_pred HHHhhhhcccCCCeEEEEc-CcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccccccceeeeecCCCCceEEEEee
Confidence 67777 22 444555554 46888888888888888888765221 11 0
Q ss_pred ------------CceEEEEeeecEEEEeeEEeecccCCCcccccCCCCCCCccccCCC-cEEEeC-CceEEEEeeEecCC
Q 015702 157 ------------GPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGD-GVSIFG-GSHVWVDHCSLSNC 222 (402)
Q Consensus 157 ------------G~~i~i~~a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gD-aI~i~g-s~nVWIDHcs~s~~ 222 (402)
+.++.+..++|+.|+|++++++.. .++.-.....+.. ...... ++.+.+ +.++++..|.+..+
T Consensus 100 ~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~~~--~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
T PF12708_consen 100 TIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENSGG--DGIYFNTGTDYRI-IGSTHVSGIFIDNGSNNVIVNNCIFNGG 176 (225)
T ss_dssp EEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-SS---SEEEECCEECEE-ECCEEEEEEEEESCEEEEEEECEEEESS
T ss_pred EEEcccccCCCCceEEEEEeCCeEEEEeEEEEccCc--cEEEEEccccCcE-eecccceeeeeccceeEEEECCccccCC
Confidence 011222245677777777765321 1111000000000 000011 344443 23444566767777
Q ss_pred CCCeeEeeeCCceEEEEcceecc-cCeeeecCCCCcccCCCcceEEEEceeecCCCc
Q 015702 223 NDGLIDAIHGSTAITISNNYMTH-HNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLV 278 (402)
Q Consensus 223 ~DgliDv~~~s~~VTISnn~f~~-H~k~~LiG~sd~~~~d~~~~vTihhN~f~~~~~ 278 (402)
.+| + ..+.++++++||.|.. ...+..+-... .+++.+|.| ++|.
T Consensus 177 ~~g-~--~~~~~~~~i~n~~~~~~~~~gi~i~~~~--------~~~i~n~~i-~~~~ 221 (225)
T PF12708_consen 177 DNG-I--ILGNNNITISNNTFEGNCGNGINIEGGS--------NIIISNNTI-ENCD 221 (225)
T ss_dssp SCS-E--ECEEEEEEEECEEEESSSSESEEEEECS--------EEEEEEEEE-ESSS
T ss_pred Cce-e--EeecceEEEEeEEECCccceeEEEECCe--------EEEEEeEEE-ECCc
Confidence 777 2 3344788899998876 44444443221 477777888 4554
No 19
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.10 E-value=0.014 Score=61.26 Aligned_cols=158 Identities=16% Similarity=0.180 Sum_probs=92.3
Q ss_pred eeEeecCCceEEeCCceEEEEeeecEEEEeeEEeecc-cC-----CCcccccCCCCCCCccccCCCcEEEeCCceEEEEe
Q 015702 143 KTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCK-RG-----GNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDH 216 (402)
Q Consensus 143 kTI~G~ga~~~I~~G~~i~i~~a~NVIIrnl~i~~~~-~g-----~~~~i~~s~~~~g~~~~~~gDaI~i~gs~nVWIDH 216 (402)
+||+|.|.+-.-. -.+|.++.++++.|++++|++.- .+ ..+.|+++.-. + ....+|.++.+++..|.+
T Consensus 122 LtIdGsG~dl~~r-dAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~-g----~~~~~I~lw~S~g~~V~~ 195 (455)
T TIGR03808 122 LTLDGGGIPLPQR-RGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTIT-Q----IAVTAIVSFDALGLIVAR 195 (455)
T ss_pred eEEEeCCCcccCC-CCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecceEe-c----cccceEEEeccCCCEEEC
Confidence 3555666543222 23677889999999999998752 21 11222221110 1 123459999999999999
Q ss_pred eEecCCCCCeeEeee-----------------------------------CCceEEEEcceecccCeeeecCCCCcccCC
Q 015702 217 CSLSNCNDGLIDAIH-----------------------------------GSTAITISNNYMTHHNKVMLLGHSDTFTQD 261 (402)
Q Consensus 217 cs~s~~~DgliDv~~-----------------------------------~s~~VTISnn~f~~H~k~~LiG~sd~~~~d 261 (402)
++++.+.|+.|-+.+ .+.+++|+.|.++++.+--+.+.+.+
T Consensus 196 N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nsss---- 271 (455)
T TIGR03808 196 NTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSAS---- 271 (455)
T ss_pred CEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEccc----
Confidence 999999997665542 25678888888888883333333221
Q ss_pred CcceEEEEceeecCCCcCCCccccC-c----e----EEEEcCeeeC-Ccceeecc-CCCce-EEEEccEEec
Q 015702 262 KNMQVTIAFNHFGEGLVQRMPRCRH-G----Y----FHVVNNDYTH-WEMYALGG-SASPT-INSQGNRFVA 321 (402)
Q Consensus 262 ~~~~vTihhN~f~~~~~~R~Pr~R~-G----~----~Hv~NN~y~~-~~~yaigg-~~~~~-i~~egN~F~~ 321 (402)
++.|..|.| + ++|+ + | .-+.||.++. -..|++-- .++.. ..++||...+
T Consensus 272 ---~~~i~~N~~-~-------~~R~~alhymfs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~~gn~irn 332 (455)
T TIGR03808 272 ---NIQITGNSV-S-------DVREVALYSEFAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVVQGNIIRN 332 (455)
T ss_pred ---CcEEECcEe-e-------eeeeeEEEEEEeCCCcEEeccEEecCcceEEEEeecCCceEEEEecceeec
Confidence 456666666 2 2344 2 1 1255666654 34566521 12222 3567777654
No 20
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.06 E-value=0.051 Score=56.23 Aligned_cols=175 Identities=16% Similarity=0.181 Sum_probs=125.8
Q ss_pred HHHhhhcCCCEEEEEeeeeEEeeCceEEeecCeeEeecCCceEEe--CCceEEE---------EeeecEEEEeeEEeecc
Q 015702 111 LRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIA--GGPCITV---------QYVTNIIIHGINIHDCK 179 (402)
Q Consensus 111 Lr~av~~~~P~~IvF~~~g~I~L~~~L~v~snkTI~G~ga~~~I~--~G~~i~i---------~~a~NVIIrnl~i~~~~ 179 (402)
|-.++.+-. -|..+-+-+-+++++|.|.+-.+|+|+||.+.|. ++..|.+ .+-.+|.+.|++|..-
T Consensus 57 le~~I~~ha--KVaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~gM~~VtF~ni~F~~~- 133 (386)
T PF01696_consen 57 LEEAIRQHA--KVALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVGMEGVTFVNIRFEGR- 133 (386)
T ss_pred HHHHHHhcC--EEEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEeeeeeeEEEEEEEecC-
Confidence 777765532 2455555566677899999999999999998874 3445654 3567899999998631
Q ss_pred cCCCcccccCCCCCCCccccCCCcEEEeCCceEEEEeeEecCCCCCeeEeeeCCceEEEEcceecccCeeeecCCCCccc
Q 015702 180 RGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFT 259 (402)
Q Consensus 180 ~g~~~~i~~s~~~~g~~~~~~gDaI~i~gs~nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~f~~H~k~~LiG~sd~~~ 259 (402)
..--++-+...+++.|.-|+|....--.++.. ....|..|+|..-+|++. +.+
T Consensus 134 -------------------~~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~-~~~---- 186 (386)
T PF01696_consen 134 -------------------DTFSGVVFHANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIV-SRG---- 186 (386)
T ss_pred -------------------CccceeEEEecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEee-cCC----
Confidence 12457778889999999999999888777754 577899999998888864 322
Q ss_pred CCCcceEEEEceeecCCCcCCCccccCceEEEEcCeeeCCcceeeccCCCceEEEEccEEecCCC
Q 015702 260 QDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPND 324 (402)
Q Consensus 260 ~d~~~~vTihhN~f~~~~~~R~Pr~R~G~~Hv~NN~y~~~~~yaigg~~~~~i~~egN~F~~~~~ 324 (402)
+.++++.+|.| +.|.=-. +-.|..++.+|...+-.-..+- ..+..+.+|.|..+..
T Consensus 187 ---~~~lsVk~C~F-ekC~igi--~s~G~~~i~hn~~~ec~Cf~l~---~g~g~i~~N~v~~~~~ 242 (386)
T PF01696_consen 187 ---KSKLSVKKCVF-EKCVIGI--VSEGPARIRHNCASECGCFVLM---KGTGSIKHNMVCGPND 242 (386)
T ss_pred ---cceEEeeheee-eheEEEE--EecCCeEEecceecccceEEEE---cccEEEeccEEeCCCC
Confidence 34788999999 5443222 3358899999999875433321 1245678999987765
No 21
>PLN02155 polygalacturonase
Probab=97.00 E-value=0.025 Score=58.75 Aligned_cols=141 Identities=18% Similarity=0.298 Sum_probs=92.4
Q ss_pred EEEEEeeeeEEeeCceEEeecCeeEeecCCceEEe--CC-------ceEEEEeeecEEEEeeEEeecccCCCcccccCCC
Q 015702 121 LWIIFARDMVITLKEELIMNSFKTIDGRGASVHIA--GG-------PCITVQYVTNIIIHGINIHDCKRGGNANVRDSPS 191 (402)
Q Consensus 121 ~~IvF~~~g~I~L~~~L~v~snkTI~G~ga~~~I~--~G-------~~i~i~~a~NVIIrnl~i~~~~~g~~~~i~~s~~ 191 (402)
.||.|.. .+.+.+.. =||+|||..-.-. .+ ..|.+..++||.|++|++++. |
T Consensus 107 ~wi~~~~------~~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nS-----------p- 167 (394)
T PLN02155 107 YWILFNK------VNRFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNS-----------Q- 167 (394)
T ss_pred eeEEEEC------cCCCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcC-----------C-
Confidence 4666643 23455544 6899998642110 01 237788999999999999863 1
Q ss_pred CCCCccccCCCcEEEeCCceEEEEeeEecCC-----CCCeeEeeeCCceEEEEcceecccCeeeecCCCCcccCCCcceE
Q 015702 192 HYGWRTISDGDGVSIFGGSHVWVDHCSLSNC-----NDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQV 266 (402)
Q Consensus 192 ~~g~~~~~~gDaI~i~gs~nVWIDHcs~s~~-----~DgliDv~~~s~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~v 266 (402)
.=.|.+.+++||.|+|.++..- .||. |+ ..+++|+|++|.|..-+...-+++.. -+|
T Consensus 168 ---------~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGi-di-~~s~nV~I~~~~I~~gDDcIaik~gs-------~nI 229 (394)
T PLN02155 168 ---------VSHMTLNGCTNVVVRNVKLVAPGNSPNTDGF-HV-QFSTGVTFTGSTVQTGDDCVAIGPGT-------RNF 229 (394)
T ss_pred ---------CeEEEEECeeeEEEEEEEEECCCCCCCCCcc-cc-ccceeEEEEeeEEecCCceEEcCCCC-------ceE
Confidence 2347888999999999999653 5654 64 56899999999999988888887642 267
Q ss_pred EEEceeecCC------CcCCCc-cccCceEEEEcCeeeC
Q 015702 267 TIAFNHFGEG------LVQRMP-RCRHGYFHVVNNDYTH 298 (402)
Q Consensus 267 TihhN~f~~~------~~~R~P-r~R~G~~Hv~NN~y~~ 298 (402)
++..+.+..+ ...+.+ .-..-.+.|.|+.+.+
T Consensus 230 ~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~ 268 (394)
T PLN02155 230 LITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTG 268 (394)
T ss_pred EEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeC
Confidence 7777766421 111222 1111246677777765
No 22
>PLN03003 Probable polygalacturonase At3g15720
Probab=96.97 E-value=0.012 Score=62.05 Aligned_cols=64 Identities=14% Similarity=0.234 Sum_probs=49.4
Q ss_pred CcEEEeCCceEEEEeeEecC-----CCCCeeEeeeCCceEEEEcceecccCeeeecCCCCcccCCCcceEEEEceeec
Q 015702 202 DGVSIFGGSHVWVDHCSLSN-----CNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFG 274 (402)
Q Consensus 202 DaI~i~gs~nVWIDHcs~s~-----~~DgliDv~~~s~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTihhN~f~ 274 (402)
=.|.+.+++||.|++.++.. -.||. |+ ..+++|+|.+|.+..-|...-+.+.. .+|++.++.++
T Consensus 162 w~i~i~~c~nV~i~~l~I~ap~~spNTDGI-Di-~~S~nV~I~n~~I~tGDDCIaiksgs-------~NI~I~n~~c~ 230 (456)
T PLN03003 162 AHIHISECNYVTISSLRINAPESSPNTDGI-DV-GASSNVVIQDCIIATGDDCIAINSGT-------SNIHISGIDCG 230 (456)
T ss_pred EEEEEeccccEEEEEEEEeCCCCCCCCCcE-ee-cCcceEEEEecEEecCCCeEEeCCCC-------ccEEEEeeEEE
Confidence 35788899999999999976 36764 64 57899999999999988877776542 25777777663
No 23
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=96.94 E-value=0.011 Score=55.92 Aligned_cols=129 Identities=22% Similarity=0.193 Sum_probs=93.4
Q ss_pred ceEEEEeeecEEEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEeCCceEEEEeeEecCCCCCeeEeeeCCceEE
Q 015702 158 PCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAIT 237 (402)
Q Consensus 158 ~~i~i~~a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~gs~nVWIDHcs~s~~~DgliDv~~~s~~VT 237 (402)
.++.+..++++.|++.+|++ ...||.+..++++-|..|.++.+.+|.. + ..+.+.+
T Consensus 36 ~gi~~~~s~~~~I~~n~i~~----------------------~~~GI~~~~s~~~~i~~n~i~~n~~Gi~-l-~~s~~~~ 91 (236)
T PF05048_consen 36 DGIYVENSDNNTISNNTISN----------------------NRYGIHLMGSSNNTIENNTISNNGYGIY-L-MGSSNNT 91 (236)
T ss_pred CEEEEEEcCCeEEEeeEEEC----------------------CCeEEEEEccCCCEEEeEEEEccCCCEE-E-EcCCCcE
Confidence 34567788999999998873 2577999999999999999999998864 3 4455559
Q ss_pred EEcceecccCeeeecCCCCcccCCCcceEEEEceeecCCCcCCCccccC-ceEEEEcCeeeCCcceeec-cCCCceEEEE
Q 015702 238 ISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRH-GYFHVVNNDYTHWEMYALG-GSASPTINSQ 315 (402)
Q Consensus 238 ISnn~f~~H~k~~LiG~sd~~~~d~~~~vTihhN~f~~~~~~R~Pr~R~-G~~Hv~NN~y~~~~~yaig-g~~~~~i~~e 315 (402)
|++|.|.+...+.++-.+. ..++..|.|. + ....-.+.. ....+.+|.+.+-..|+|- ......-.+.
T Consensus 92 I~~N~i~~n~~GI~l~~s~--------~~~I~~N~i~-~-~~~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~ 161 (236)
T PF05048_consen 92 ISNNTISNNGYGIYLYGSS--------NNTISNNTIS-N-NGYGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTIY 161 (236)
T ss_pred EECCEecCCCceEEEeeCC--------ceEEECcEEe-C-CCEEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEEE
Confidence 9999999877776665443 4788888883 2 233233333 4677889998876667765 3344456778
Q ss_pred ccEEe
Q 015702 316 GNRFV 320 (402)
Q Consensus 316 gN~F~ 320 (402)
+|+|.
T Consensus 162 ~N~f~ 166 (236)
T PF05048_consen 162 NNNFN 166 (236)
T ss_pred CCCcc
Confidence 99993
No 24
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=96.86 E-value=0.0084 Score=60.36 Aligned_cols=107 Identities=21% Similarity=0.314 Sum_probs=73.9
Q ss_pred EeecCeeEeecCCceEEeC----------CceEEEEeeecEEEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEe
Q 015702 138 IMNSFKTIDGRGASVHIAG----------GPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF 207 (402)
Q Consensus 138 ~v~snkTI~G~ga~~~I~~----------G~~i~i~~a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~ 207 (402)
.+...=||+|+|..=.-.. -..|.+.+++|+.|++|+|++. | .=.+.+.
T Consensus 63 ~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~ns-----------p----------~w~~~~~ 121 (326)
T PF00295_consen 63 TITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNS-----------P----------FWHIHIN 121 (326)
T ss_dssp ECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES------------S----------SESEEEE
T ss_pred EecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCC-----------C----------eeEEEEE
Confidence 3444468899877210000 1237788999999999999863 1 1247889
Q ss_pred CCceEEEEeeEecCC-----CCCeeEeeeCCceEEEEcceecccCeeeecCCCCcccCCCcceEEEEceeec
Q 015702 208 GGSHVWVDHCSLSNC-----NDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFG 274 (402)
Q Consensus 208 gs~nVWIDHcs~s~~-----~DgliDv~~~s~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTihhN~f~ 274 (402)
.++||+|+|.++... .||. |+ .++++|+|.+|.+...+...-+.+... .|++.+++|.
T Consensus 122 ~~~nv~i~~i~I~~~~~~~NtDGi-d~-~~s~nv~I~n~~i~~gDD~Iaiks~~~-------ni~v~n~~~~ 184 (326)
T PF00295_consen 122 DCDNVTISNITINNPANSPNTDGI-DI-DSSKNVTIENCFIDNGDDCIAIKSGSG-------NILVENCTCS 184 (326)
T ss_dssp SEEEEEEESEEEEEGGGCTS--SE-EE-ESEEEEEEESEEEESSSESEEESSEEC-------EEEEESEEEE
T ss_pred ccCCeEEcceEEEecCCCCCcceE-EE-EeeeEEEEEEeecccccCccccccccc-------ceEEEeEEEe
Confidence 999999999998753 6775 64 478999999999999887776654321 7888888884
No 25
>PLN02197 pectinesterase
Probab=96.74 E-value=0.026 Score=61.46 Aligned_cols=149 Identities=23% Similarity=0.324 Sum_probs=92.7
Q ss_pred Cccccc--cccccccCcccccCCCcCCCCCee---EEEcCCCCCCCCCCCch---hHHHhhhc----CCCEEEEEeeeeE
Q 015702 63 DPKWEE--NRQQLADCAIGFGKQAIGGKDGKI---YVVTDSGDDDPVNPKPG---TLRYAVIQ----DEPLWIIFARDMV 130 (402)
Q Consensus 63 ~~~w~~--~r~~la~~a~GfG~~ttGG~gG~v---y~VT~~~D~~~~~~~pG---tLr~av~~----~~P~~IvF~~~g~ 130 (402)
.|.|-. +|+.|+ +.+.|.++-||.++.+ ++|.- | +.| |+.+||.. ...++||+-+.|+
T Consensus 244 ~p~w~~~~~r~ll~--~~~~~~~~~~~~~~~~~~~~vVa~--d------GsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~Gv 313 (588)
T PLN02197 244 IPTWVSGADRKLMA--KAGRGANAGGGGGGKIKATHVVAK--D------GSGQFKTISQAVMACPDKNPGRCIIHIKAGI 313 (588)
T ss_pred CCCCCCccchhhhc--cCcccccccccccccccccEEEcC--C------CCCCcCCHHHHHHhccccCCceEEEEEeCce
Confidence 588855 466663 4556667777776643 33331 2 455 67788753 3346777766776
Q ss_pred EeeCceEEe---ecCeeEeecCCceEEe---------CCc------eEEEEeeecEEEEeeEEeecccCCCcccccCCCC
Q 015702 131 ITLKEELIM---NSFKTIDGRGASVHIA---------GGP------CITVQYVTNIIIHGINIHDCKRGGNANVRDSPSH 192 (402)
Q Consensus 131 I~L~~~L~v---~snkTI~G~ga~~~I~---------~G~------~i~i~~a~NVIIrnl~i~~~~~g~~~~i~~s~~~ 192 (402)
.++.|.| .+|+||.|.|...+|. +|. .+. -.+++++.+||.|++-...
T Consensus 314 --Y~E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~-v~~~~F~a~nitf~Ntag~----------- 379 (588)
T PLN02197 314 --YNEQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQ-VESEGFMAKWIGFKNTAGP----------- 379 (588)
T ss_pred --EEEEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccceeEEE-EECCcEEEEEeEEEeCCCC-----------
Confidence 3455656 4789999988764432 221 122 2689999999999975311
Q ss_pred CCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeEeeeCCceEEEEcceec
Q 015702 193 YGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMT 244 (402)
Q Consensus 193 ~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~f~ 244 (402)
.+.-|+-+. .++..-+.+|.|....|=|.+- +..--+.+|++.
T Consensus 380 ------~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~---~~Rqyy~~C~I~ 423 (588)
T PLN02197 380 ------MGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVN---NGRQFYRNIVVS 423 (588)
T ss_pred ------CCCceEEEEecCCcEEEEEeEEEecCcceEec---CCCEEEEeeEEE
Confidence 234566665 5788889999999888877652 223344455554
No 26
>PLN02480 Probable pectinesterase
Probab=96.70 E-value=0.043 Score=56.11 Aligned_cols=119 Identities=22% Similarity=0.341 Sum_probs=77.7
Q ss_pred hHHHhhhc----CCCEEEEEeeeeEEeeCceEEe---ecCeeEeecCCce-EEe---------CCceEEEEeeecEEEEe
Q 015702 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASV-HIA---------GGPCITVQYVTNIIIHG 172 (402)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~-~I~---------~G~~i~i~~a~NVIIrn 172 (402)
|+.+||.. +..+++|+-..|+-+ +.|.| ++|+||.|.+... .|. .+..+++ .+++++++|
T Consensus 62 TIQ~AIdaap~~~~~~~~I~Ik~GvY~--E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV-~a~~f~a~n 138 (343)
T PLN02480 62 SVQSAIDAVPVGNSEWIIVHLRKGVYR--EKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTV-EAPHFVAFG 138 (343)
T ss_pred cHHHHHhhCccCCCceEEEEEcCcEEE--EEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEE-ECCCEEEEe
Confidence 78888754 234666666666544 56666 6789999987543 332 2334555 589999999
Q ss_pred eEEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeEeeeCCceEEEEcceeccc
Q 015702 173 INIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHH 246 (402)
Q Consensus 173 l~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~f~~H 246 (402)
|+|++-.+.+.. ...++-|+-+. .++++-+.+|.|.-..|=|.+- ...--+.+|++..+
T Consensus 139 LTf~Nta~~g~~------------~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~C~IeG~ 198 (343)
T PLN02480 139 ISIRNDAPTGMA------------FTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDY---KGRHYYHSCYIQGS 198 (343)
T ss_pred eEEEecCCCCCC------------CCCCCceEEEEecCCcEEEEeeEEecccceeEeC---CCCEEEEeCEEEee
Confidence 999986432110 01245677775 6889999999999999888752 23445556666543
No 27
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=96.69 E-value=0.09 Score=55.40 Aligned_cols=95 Identities=17% Similarity=0.240 Sum_probs=60.5
Q ss_pred HHHhhhcCC-C-EEEEEeeeeEEeeCceEEeecCeeEeecCCce--EEeCCceEE-EEeeecEEEEeeEEeecccCCCcc
Q 015702 111 LRYAVIQDE-P-LWIIFARDMVITLKEELIMNSFKTIDGRGASV--HIAGGPCIT-VQYVTNIIIHGINIHDCKRGGNAN 185 (402)
Q Consensus 111 Lr~av~~~~-P-~~IvF~~~g~I~L~~~L~v~snkTI~G~ga~~--~I~~G~~i~-i~~a~NVIIrnl~i~~~~~g~~~~ 185 (402)
|..|+.+-. | -.|++... +- +...|.+.+++||.|..... .|.++..+. -..++||-|++++|++- +.
T Consensus 57 LQaAIdaAa~gG~tV~Lp~G-~Y-~~G~L~L~spltL~G~~gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGs--G~--- 129 (455)
T TIGR03808 57 LQRAIDEAARAQTPLALPPG-VY-RTGPLRLPSGAQLIGVRGATRLVFTGGPSLLSSEGADGIGLSGLTLDGG--GI--- 129 (455)
T ss_pred HHHHHHHhhcCCCEEEECCC-ce-ecccEEECCCcEEEecCCcEEEEEcCCceEEEEecCCCeEEEeeEEEeC--CC---
Confidence 777775422 2 23555432 22 23678888999999985442 244333333 35799999999999852 11
Q ss_pred cccCCCCCCCccccCCCcEEEeCCceEEEEeeEecCC
Q 015702 186 VRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNC 222 (402)
Q Consensus 186 i~~s~~~~g~~~~~~gDaI~i~gs~nVWIDHcs~s~~ 222 (402)
.+ ....-+|.+.+++++-|.+|.|...
T Consensus 130 ------dl----~~rdAgI~v~~a~~v~Iedn~L~gs 156 (455)
T TIGR03808 130 ------PL----PQRRGLIHCQGGRDVRITDCEITGS 156 (455)
T ss_pred ------cc----cCCCCEEEEccCCceEEEeeEEEcC
Confidence 01 1233478888899999999999876
No 28
>PLN03010 polygalacturonase
Probab=96.69 E-value=0.038 Score=57.71 Aligned_cols=101 Identities=26% Similarity=0.349 Sum_probs=71.5
Q ss_pred CeeEeecCCceEEeCCceEEEEeeecEEEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEeCCceEEEEeeEecC
Q 015702 142 FKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSN 221 (402)
Q Consensus 142 nkTI~G~ga~~~I~~G~~i~i~~a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~gs~nVWIDHcs~s~ 221 (402)
.=||+|+|..- - ..|.+.+++|+.|++|++++. | .=.|.+.+++||.|++..+..
T Consensus 146 ~G~IDG~G~~w--w--~~l~~~~~~nv~v~gitl~ns-----------p----------~~~i~i~~~~nv~i~~i~I~a 200 (409)
T PLN03010 146 SGTIDGRGSSF--W--EALHISKCDNLTINGITSIDS-----------P----------KNHISIKTCNYVAISKINILA 200 (409)
T ss_pred ceEEeCCCccc--c--ceEEEEeecCeEEeeeEEEcC-----------C----------ceEEEEeccccEEEEEEEEeC
Confidence 34556665431 1 147788999999999999863 1 224788899999999999875
Q ss_pred -----CCCCeeEeeeCCceEEEEcceecccCeeeecCCCCcccCCCcceEEEEceeec
Q 015702 222 -----CNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFG 274 (402)
Q Consensus 222 -----~~DgliDv~~~s~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTihhN~f~ 274 (402)
-.||. |+ ..+++|+|++|.+..-|...-+.+..+ ...|+..++..+
T Consensus 201 ~~~s~NTDGi-Di-~~s~nV~I~n~~I~~gDDcIaiksgs~-----ni~I~~~~C~~g 251 (409)
T PLN03010 201 PETSPNTDGI-DI-SYSTNINIFDSTIQTGDDCIAINSGSS-----NINITQINCGPG 251 (409)
T ss_pred CCCCCCCCce-ee-eccceEEEEeeEEecCCCeEEecCCCC-----cEEEEEEEeECc
Confidence 36764 64 568999999999999988877765421 235555555433
No 29
>smart00656 Amb_all Amb_all domain.
Probab=96.63 E-value=0.077 Score=49.65 Aligned_cols=135 Identities=19% Similarity=0.195 Sum_probs=82.6
Q ss_pred ecCeeEeecCCceEEeCCceEEEEeeecEEEEeeEEeecccCCCcccccCCCCCCCccccCCCc-EEEe-CCceEEEEee
Q 015702 140 NSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDG-VSIF-GGSHVWVDHC 217 (402)
Q Consensus 140 ~snkTI~G~ga~~~I~~G~~i~i~~a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDa-I~i~-gs~nVWIDHc 217 (402)
--|++|.+..... ..++-+|.+..++||+|-+..|....+.+. + ....|+ +.+. ++.+|=|-.|
T Consensus 44 irnl~i~~~~~~~-~~~~D~i~~~~~~~VwIDHct~s~~~~~~~----------~---~~~~D~~~di~~~s~~vTvs~~ 109 (190)
T smart00656 44 IRNLTIHDPKPVY-GSDGDAISIDGSSNVWIDHVSLSGCTVTGF----------G---DDTYDGLIDIKNGSTYVTISNN 109 (190)
T ss_pred EeCCEEECCccCC-CCCCCEEEEeCCCeEEEEccEeEcceeccC----------C---CCCCCccEEECcccccEEEECc
Confidence 3577777753321 123557888899999999999986421110 0 122344 3444 5788888888
Q ss_pred EecCCCCCeeEeeeCC------ceEEEEcceecccC-eeeecCCCCcccCCCcceEEEEceeecCCCcCCCcccc-CceE
Q 015702 218 SLSNCNDGLIDAIHGS------TAITISNNYMTHHN-KVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCR-HGYF 289 (402)
Q Consensus 218 s~s~~~DgliDv~~~s------~~VTISnn~f~~H~-k~~LiG~sd~~~~d~~~~vTihhN~f~~~~~~R~Pr~R-~G~~ 289 (402)
.|....-+.+--..++ -.||+.+|+|.+.. +..++.. -++-+..|+| .+..+-.--++ .+.+
T Consensus 110 ~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r~---------g~~hv~NN~~-~n~~~~~~~~~~~~~v 179 (190)
T smart00656 110 YFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVRF---------GYVHVYNNYY-TGWTSYAIGGRMGATI 179 (190)
T ss_pred eEecCCEEEEEccCCCccccccceEEEECcEEcCcccCCCcccC---------CEEEEEeeEE-eCcccEeEecCCCcEE
Confidence 8866544443211111 27999999998753 5555532 1678889999 44432222222 3589
Q ss_pred EEEcCeeeC
Q 015702 290 HVVNNDYTH 298 (402)
Q Consensus 290 Hv~NN~y~~ 298 (402)
.+-||||.+
T Consensus 180 ~~E~N~F~~ 188 (190)
T smart00656 180 LSEGNYFEA 188 (190)
T ss_pred EEECeEEEC
Confidence 999999986
No 30
>PLN02793 Probable polygalacturonase
Probab=96.55 E-value=0.055 Score=57.07 Aligned_cols=109 Identities=15% Similarity=0.219 Sum_probs=77.7
Q ss_pred eEEeecCeeEeecCCceE-----EeC-------CceEEEEeeecEEEEeeEEeecccCCCcccccCCCCCCCccccCCCc
Q 015702 136 ELIMNSFKTIDGRGASVH-----IAG-------GPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDG 203 (402)
Q Consensus 136 ~L~v~snkTI~G~ga~~~-----I~~-------G~~i~i~~a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDa 203 (402)
.|.|...=||+|+|..-. +.. -..|.+.+++||.|++|++++. | .=.
T Consensus 144 ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nS-----------p----------~~~ 202 (443)
T PLN02793 144 HLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDS-----------Q----------QMH 202 (443)
T ss_pred eEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcC-----------C----------CeE
Confidence 354544468888885321 000 1146788999999999999863 1 224
Q ss_pred EEEeCCceEEEEeeEecC-----CCCCeeEeeeCCceEEEEcceecccCeeeecCCCCcccCCCcceEEEEceeec
Q 015702 204 VSIFGGSHVWVDHCSLSN-----CNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFG 274 (402)
Q Consensus 204 I~i~gs~nVWIDHcs~s~-----~~DgliDv~~~s~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTihhN~f~ 274 (402)
|.+.+++||.|++.++.. -.||. |+ ..+++|+|++|.+..-+....+..+. .+|++.++.+.
T Consensus 203 i~~~~~~nv~i~~l~I~~p~~spNTDGI-di-~~s~nV~I~n~~I~~gDDcIaik~~s-------~nI~I~n~~c~ 269 (443)
T PLN02793 203 IAFTNCRRVTISGLKVIAPATSPNTDGI-HI-SASRGVVIKDSIVRTGDDCISIVGNS-------SRIKIRNIACG 269 (443)
T ss_pred EEEEccCcEEEEEEEEECCCCCCCCCcE-ee-eccceEEEEeCEEeCCCCeEEecCCc-------CCEEEEEeEEe
Confidence 778899999999999975 36764 64 57899999999999988877775432 26788777763
No 31
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=96.09 E-value=0.097 Score=54.65 Aligned_cols=118 Identities=21% Similarity=0.312 Sum_probs=83.3
Q ss_pred EEEEEeeeeEEeeCceEEeecCeeEeecCCceE------Ee-C----CceEEEEeeecEEEEeeEEeecccCCCcccccC
Q 015702 121 LWIIFARDMVITLKEELIMNSFKTIDGRGASVH------IA-G----GPCITVQYVTNIIIHGINIHDCKRGGNANVRDS 189 (402)
Q Consensus 121 ~~IvF~~~g~I~L~~~L~v~snkTI~G~ga~~~------I~-~----G~~i~i~~a~NVIIrnl~i~~~~~g~~~~i~~s 189 (402)
.||.|.. -..|.|...=||+|+|..-. .. + -..|.+..++||.|++|+|++.
T Consensus 114 ~~i~~~~------~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nS----------- 176 (404)
T PLN02188 114 DWIEFGW------VNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNS----------- 176 (404)
T ss_pred ceEEEec------eeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcC-----------
Confidence 4676641 13456656788999986311 00 0 1246778999999999999863
Q ss_pred CCCCCCccccCCCcEEEeCCceEEEEeeEecC-----CCCCeeEeeeCCceEEEEcceecccCeeeecCCCCcccCCCcc
Q 015702 190 PSHYGWRTISDGDGVSIFGGSHVWVDHCSLSN-----CNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNM 264 (402)
Q Consensus 190 ~~~~g~~~~~~gDaI~i~gs~nVWIDHcs~s~-----~~DgliDv~~~s~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~ 264 (402)
..=.|.+..++||.|++.++.. -.||. |+ ..+++|+|.+|.|..-+...-++... -
T Consensus 177 ----------p~w~i~~~~~~~v~i~~v~I~~~~~spNtDGi-di-~~s~nV~I~n~~I~~GDDcIaiksg~-------~ 237 (404)
T PLN02188 177 ----------KFFHIALVECRNFKGSGLKISAPSDSPNTDGI-HI-ERSSGVYISDSRIGTGDDCISIGQGN-------S 237 (404)
T ss_pred ----------CCeEEEEEccccEEEEEEEEeCCCCCCCCCcE-ee-eCcccEEEEeeEEeCCCcEEEEccCC-------c
Confidence 1234788899999999999876 35664 64 57899999999999988887776432 1
Q ss_pred eEEEEceeec
Q 015702 265 QVTIAFNHFG 274 (402)
Q Consensus 265 ~vTihhN~f~ 274 (402)
++++-++.+.
T Consensus 238 nI~I~n~~c~ 247 (404)
T PLN02188 238 QVTITRIRCG 247 (404)
T ss_pred cEEEEEEEEc
Confidence 5777777663
No 32
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=96.07 E-value=0.05 Score=51.23 Aligned_cols=118 Identities=19% Similarity=0.220 Sum_probs=70.9
Q ss_pred eCCceEEEEeeecEEEEeeEEeecccCCCcccccCCCCCCCccccCCCc-EEEe-CCceEEEEeeEecCCCCCeeE----
Q 015702 155 AGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDG-VSIF-GGSHVWVDHCSLSNCNDGLID---- 228 (402)
Q Consensus 155 ~~G~~i~i~~a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDa-I~i~-gs~nVWIDHcs~s~~~DgliD---- 228 (402)
.++-+|.+.+++||+|.+..|........ ....|+ |.+. ++++|=|-+|-|......++-
T Consensus 73 ~~~Dai~i~~~~nVWIDH~sfs~~~~~~~--------------~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d 138 (200)
T PF00544_consen 73 SDGDAISIDNSSNVWIDHCSFSWGNFECN--------------SDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSD 138 (200)
T ss_dssp CS--SEEEESTEEEEEES-EEEETTS-GG--------------GSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCT
T ss_pred cCCCeEEEEecccEEEeccEEeccccccc--------------cccCCceEEEEeCCceEEEEchhccccccccccCCCC
Confidence 34557888899999999999997632110 112444 5665 588888888888875333321
Q ss_pred --eeeCCceEEEEcceecccC-eeeecCCCCcccCCCcceEEEEceeecCCCcCCCccccC-ceEEEEcCee
Q 015702 229 --AIHGSTAITISNNYMTHHN-KVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRH-GYFHVVNNDY 296 (402)
Q Consensus 229 --v~~~s~~VTISnn~f~~H~-k~~LiG~sd~~~~d~~~~vTihhN~f~~~~~~R~Pr~R~-G~~Hv~NN~y 296 (402)
.......||+.+|+|.++. +..++.. -++-+..|+| .+..+..=.+|. +.+-+-||||
T Consensus 139 ~~~~~~~~~vT~hhN~f~~~~~R~P~~r~---------G~~Hv~NN~~-~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 139 SNSTDRGLRVTFHHNYFANTNSRNPRVRF---------GYVHVYNNYY-YNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp TCGGGTTEEEEEES-EEEEEEE-TTEECS---------CEEEEES-EE-EEECSESEEEETTEEEEEES-EE
T ss_pred CccccCCceEEEEeEEECchhhCCCcccc---------cEEEEEEeee-ECCCCEEEEccCCeEEEEECcCC
Confidence 1112259999999998753 5545432 1688899988 345555444444 4788889987
No 33
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=96.03 E-value=0.26 Score=48.30 Aligned_cols=186 Identities=20% Similarity=0.231 Sum_probs=96.0
Q ss_pred hHHHhhhcCCCEEEEEeeeeEEeeC----ceEEeecCeeEeecCCc-----eEEeC--------C-------ceEEEEee
Q 015702 110 TLRYAVIQDEPLWIIFARDMVITLK----EELIMNSFKTIDGRGAS-----VHIAG--------G-------PCITVQYV 165 (402)
Q Consensus 110 tLr~av~~~~P~~IvF~~~g~I~L~----~~L~v~snkTI~G~ga~-----~~I~~--------G-------~~i~i~~a 165 (402)
||.+|+.+-.|-.+|.=..|+-.-. -+|.+.+.+||.|..+. +.+.+ | -.++|..+
T Consensus 17 Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~~ 96 (246)
T PF07602_consen 17 TITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIILA 96 (246)
T ss_pred HHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEec
Confidence 5667766554443333344444322 24666777777764331 11111 1 12455567
Q ss_pred ecEEEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEeCCceEEEEeeEecCC-CCCeeEeee----CCceEEEEc
Q 015702 166 TNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNC-NDGLIDAIH----GSTAITISN 240 (402)
Q Consensus 166 ~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~gs~nVWIDHcs~s~~-~DgliDv~~----~s~~VTISn 240 (402)
++..|+.++|++..+ ..+-||.|.++ +.-|..|+|..+ .+|...... ....++|+.
T Consensus 97 ~~~~i~GvtItN~n~------------------~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~G 157 (246)
T PF07602_consen 97 NNATISGVTITNPNI------------------ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISG 157 (246)
T ss_pred CCCEEEEEEEEcCCC------------------CcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEeec
Confidence 888889999886321 25678898877 777899999996 666443222 234667777
Q ss_pred ceecccCeeeecCCCCcccCCCcceEEEEceeecCCCc-----CCCccccCc-eEEEEcCeeeCCcceeeccCC--CceE
Q 015702 241 NYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLV-----QRMPRCRHG-YFHVVNNDYTHWEMYALGGSA--SPTI 312 (402)
Q Consensus 241 n~f~~H~k~~LiG~sd~~~~d~~~~vTihhN~f~~~~~-----~R~Pr~R~G-~~Hv~NN~y~~~~~yaigg~~--~~~i 312 (402)
|.+.....+.-+-... .. ....+-+|++.++.. ...|-+..+ .-.+-||.+.+-..|.+--.. .-++
T Consensus 158 N~~~~~~~Gi~i~~~~--~~---~~n~I~NN~I~~N~~Gi~~~~~~pDlG~~s~~~~g~N~~~~N~~~Dl~~~~~~~~~l 232 (246)
T PF07602_consen 158 NSIYFNKTGISISDNA--AP---VENKIENNIIENNNIGIVAIGDAPDLGTGSEGSPGNNIFRNNGRYDLNNSATPGQTL 232 (246)
T ss_pred ceEEecCcCeEEEccc--CC---ccceeeccEEEeCCcCeEeeccCCccccCCCCCCCCcEEecCcceeeEeccCCceeE
Confidence 7766433322221111 00 012334455532111 111333221 223556677666666664422 2366
Q ss_pred EEEccEE
Q 015702 313 NSQGNRF 319 (402)
Q Consensus 313 ~~egN~F 319 (402)
++.||..
T Consensus 233 ~a~gN~l 239 (246)
T PF07602_consen 233 YAVGNQL 239 (246)
T ss_pred EEeCCcc
Confidence 6667655
No 34
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=95.17 E-value=0.2 Score=54.20 Aligned_cols=103 Identities=18% Similarity=0.220 Sum_probs=69.7
Q ss_pred ceEEEEeeecEEEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEeCCceEEEEeeEecCCCCCeeEeee------
Q 015702 158 PCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIH------ 231 (402)
Q Consensus 158 ~~i~i~~a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~gs~nVWIDHcs~s~~~DgliDv~~------ 231 (402)
.++..+.++|+.|+||+|..-.+ ...|||-+..++||-|+-|.|+.+ |-.|-++.
T Consensus 262 ~~~h~~~~~nl~~~nl~I~~~~~------------------~NtDG~d~~sc~NvlI~~~~fdtg-DD~I~iksg~~~~~ 322 (542)
T COG5434 262 WTVHPVDCDNLTFRNLTIDANRF------------------DNTDGFDPGSCSNVLIEGCRFDTG-DDCIAIKSGAGLDG 322 (542)
T ss_pred EEEeeecccCceecceEEECCCC------------------CCCCccccccceeEEEeccEEecC-CceEEeecccCCcc
Confidence 45667899999999999974221 157999999999999999999984 44444432
Q ss_pred -----CCceEEEEcceecccCeeeecCCCCcccCCCcceEEEEceeecCCCcCCCccc
Q 015702 232 -----GSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRC 284 (402)
Q Consensus 232 -----~s~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTihhN~f~~~~~~R~Pr~ 284 (402)
-+.+|+|++|+|..-.-+..+|+.- .-+...+++-.|.| .+ ..|.=|+
T Consensus 323 ~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~---~ggv~ni~ved~~~-~~-~d~GLRi 375 (542)
T COG5434 323 KKGYGPSRNIVIRNCYFSSGHGGLVLGSEM---GGGVQNITVEDCVM-DN-TDRGLRI 375 (542)
T ss_pred cccccccccEEEecceecccccceEeeeec---CCceeEEEEEeeee-cc-Ccceeee
Confidence 2457999999998533344444321 12234688888888 33 4454444
No 35
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=94.88 E-value=0.37 Score=52.00 Aligned_cols=112 Identities=18% Similarity=0.240 Sum_probs=71.4
Q ss_pred hHHHhhhc-----CCCEEEEEeeeeEEeeCceEEe---ecCeeEeecCCceEE-e------CCc------eEEEEeeecE
Q 015702 110 TLRYAVIQ-----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHI-A------GGP------CITVQYVTNI 168 (402)
Q Consensus 110 tLr~av~~-----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I-~------~G~------~i~i~~a~NV 168 (402)
|+.+||.. ...+++|+-+.|+- ++.|.| .+|+||.|.|...+| . +|. .+. ..++|+
T Consensus 239 TIq~AI~a~~~~~~~~r~vI~Ik~GvY--~E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaTv~-v~~~~F 315 (529)
T PLN02170 239 TIGEALLSTSLESGGGRTVIYLKAGTY--HENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTATVA-AMGDGF 315 (529)
T ss_pred hHHHHHHhcccccCCceEEEEEeCCee--EEEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceEEE-EEcCCe
Confidence 67778852 22367777777773 455655 679999999876543 2 121 122 368999
Q ss_pred EEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeEeeeCCceEEEEcceec
Q 015702 169 IIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMT 244 (402)
Q Consensus 169 IIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~f~ 244 (402)
+.+||.|++-... ..+-|+-+. .++...+.+|.|....|=|.+- +..--+.+|++.
T Consensus 316 ~a~nitf~Ntag~-----------------~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~---~~Rqyy~~C~I~ 372 (529)
T PLN02170 316 IARDITFVNSAGP-----------------NSEQAVALRVGSDKSVVYRCSVEGYQDSLYTH---SKRQFYRETDIT 372 (529)
T ss_pred EEEeeEEEecCCC-----------------CCCceEEEEecCCcEEEEeeeEeccCCcceeC---CCCEEEEeeEEc
Confidence 9999999985321 123455555 4677889999998887777652 223334455554
No 36
>PLN02432 putative pectinesterase
Probab=94.49 E-value=0.72 Score=46.30 Aligned_cols=120 Identities=20% Similarity=0.370 Sum_probs=74.6
Q ss_pred hHHHhhhc----CCCEEEEEeeeeEEeeCceEEe---ecCeeEeecCCceEEe---C------CceEEEEeeecEEEEee
Q 015702 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHIA---G------GPCITVQYVTNIIIHGI 173 (402)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I~---~------G~~i~i~~a~NVIIrnl 173 (402)
|+.+||.. +..+++||-+.|+- ++.|.| .+|+||.|.+...+|. + .+.+.+ .++|++.+||
T Consensus 25 TIq~Aida~p~~~~~~~~I~I~~G~Y--~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v-~a~~f~a~nl 101 (293)
T PLN02432 25 KIQDAIDAVPSNNSQLVFIWVKPGIY--REKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSV-LASDFVGRFL 101 (293)
T ss_pred CHHHHHhhccccCCceEEEEEeCcee--EEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEE-ECCCeEEEee
Confidence 56677643 22345555555643 455655 6899999988654432 1 222333 6899999999
Q ss_pred EEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeEeeeCCceEEEEcceecccCeeeec
Q 015702 174 NIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLL 252 (402)
Q Consensus 174 ~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~f~~H~k~~Li 252 (402)
.|++-.+ ..+-|+.+. .++.+-+.+|.|.-..|=|++ ....--+.+|++..+=. +++
T Consensus 102 t~~Nt~g------------------~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~---~~gr~yf~~c~I~G~VD-FIF 159 (293)
T PLN02432 102 TIQNTFG------------------SSGKAVALRVAGDRAAFYGCRILSYQDTLLD---DTGRHYYRNCYIEGATD-FIC 159 (293)
T ss_pred EEEeCCC------------------CCCceEEEEEcCCcEEEEcceEecccceeEE---CCCCEEEEeCEEEeccc-EEe
Confidence 9997532 123455555 467788999999988888875 23344555666654321 245
Q ss_pred CC
Q 015702 253 GH 254 (402)
Q Consensus 253 G~ 254 (402)
|.
T Consensus 160 G~ 161 (293)
T PLN02432 160 GN 161 (293)
T ss_pred cC
Confidence 54
No 37
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=94.48 E-value=0.51 Score=51.20 Aligned_cols=112 Identities=17% Similarity=0.301 Sum_probs=71.1
Q ss_pred hHHHhhhc----CCCEEEEEeeeeEEeeCceEEe---ecCeeEeecCCceEE-e------CCce------EEEEeeecEE
Q 015702 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHI-A------GGPC------ITVQYVTNII 169 (402)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I-~------~G~~------i~i~~a~NVI 169 (402)
|+.+||.. ...++|||-+.|+ .++.|.| .+|+||.|.|...+| . +|.. +. -.+++++
T Consensus 250 TIq~Ai~a~P~~~~~r~vI~Ik~G~--Y~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~~-v~~~~F~ 326 (548)
T PLN02301 250 TVKEAVASAPDNSKTRYVIYVKKGT--YKENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATVA-AVGDGFI 326 (548)
T ss_pred cHHHHHHhhhhcCCceEEEEEeCce--eeEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEEE-EECCceE
Confidence 67778743 3346777777777 3456666 579999999876543 2 2211 11 2689999
Q ss_pred EEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeEeeeCCceEEEEcceec
Q 015702 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMT 244 (402)
Q Consensus 170 Irnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~f~ 244 (402)
.+||.|++-... ...-|+-+. .++..-+.+|.|....|=|.+- +..--+.+|++.
T Consensus 327 a~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~---~~Rqyy~~C~I~ 382 (548)
T PLN02301 327 AQDIWFQNTAGP-----------------EKHQAVALRVSADQAVINRCRIDAYQDTLYAH---SLRQFYRDSYIT 382 (548)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEecCCcEEEEeeeeeeccccceec---CCcEEEEeeEEE
Confidence 999999975311 123455555 4678889999998877766651 223344455544
No 38
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=94.45 E-value=0.42 Score=51.81 Aligned_cols=113 Identities=18% Similarity=0.222 Sum_probs=72.6
Q ss_pred hHHHhhhc----CCCEEEEEeeeeEEeeCceEEe---ecCeeEeecCCceEE-e------CC------ceEEEEeeecEE
Q 015702 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHI-A------GG------PCITVQYVTNII 169 (402)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I-~------~G------~~i~i~~a~NVI 169 (402)
|+.+||.. +..++||+-+.|+- ++.|.| .+|+||.|.|...+| . +| +.+.+ .+++++
T Consensus 244 TIq~Ai~a~p~~~~~r~vI~Ik~GvY--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 320 (541)
T PLN02416 244 TITDAINFAPNNSNDRIIIYVREGVY--EENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATLAV-SGEGFL 320 (541)
T ss_pred CHHHHHHhhhhcCCceEEEEEeCcee--EEEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEEEE-ECCCeE
Confidence 67778743 44577777777754 455655 579999999876543 2 22 12333 689999
Q ss_pred EEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeEeeeCCceEEEEcceecc
Q 015702 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTH 245 (402)
Q Consensus 170 Irnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~f~~ 245 (402)
.+||.|++-... ..+-|+-+. .++.+-+-+|.|....|=|.+ .+..--+.+|++..
T Consensus 321 a~nitf~Ntag~-----------------~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~---~~~Rqyy~~C~I~G 377 (541)
T PLN02416 321 ARDITIENTAGP-----------------EKHQAVALRVNADLVALYRCTINGYQDTLYV---HSFRQFYRECDIYG 377 (541)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEEcCccEEEEcceEecccchhcc---CCCceEEEeeEEee
Confidence 999999985321 133555554 467788999999887777664 23344455555543
No 39
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=94.23 E-value=0.33 Score=50.99 Aligned_cols=116 Identities=22% Similarity=0.221 Sum_probs=55.9
Q ss_pred cCCCcEEEeC------CceEEEEeeEecCC--CCCeeEeeeCCceEEEEcceecccCeeeecCCCCcccCCCcceEEEEc
Q 015702 199 SDGDGVSIFG------GSHVWVDHCSLSNC--NDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAF 270 (402)
Q Consensus 199 ~~gDaI~i~g------s~nVWIDHcs~s~~--~DgliDv~~~s~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTihh 270 (402)
.++.+|.|-. .++.-|.|+-|..| .-|.|+++ |..-||.+|.|.+..-.+-+=|.. ..|+..
T Consensus 182 NggEtIRiG~S~~S~~~s~t~Ve~NlFe~cdGE~EIISvK--S~~N~ir~Ntf~es~G~ltlRHGn--------~n~V~g 251 (425)
T PF14592_consen 182 NGGETIRIGTSHSSMSDSNTTVENNLFERCDGEVEIISVK--SSDNTIRNNTFRESQGSLTLRHGN--------RNTVEG 251 (425)
T ss_dssp S---SEEE-SSTT-B-----EEES-EEEEE-SSSEEEEEE--SBT-EEES-EEES-SSEEEEEE-S--------S-EEES
T ss_pred CCceeEEEecccccccccceeeecchhhhcCCceeEEEee--cCCceEeccEEEeccceEEEecCC--------CceEec
Confidence 4566777732 35677888888776 34456554 667788888888876544443332 578999
Q ss_pred eeecCCCcC--CCcccc-CceEE-EEcCeeeCCcc----------eeeccC------CCceEEEEccEEecCCCC
Q 015702 271 NHFGEGLVQ--RMPRCR-HGYFH-VVNNDYTHWEM----------YALGGS------ASPTINSQGNRFVAPNDR 325 (402)
Q Consensus 271 N~f~~~~~~--R~Pr~R-~G~~H-v~NN~y~~~~~----------yaigg~------~~~~i~~egN~F~~~~~~ 325 (402)
|+|- +... ..+=+| .|.-| |+|||+++-.. +++-.+ .-..+.+++|-|++...+
T Consensus 252 N~Fi-Gng~~~~tGGIRIi~~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~~~ 325 (425)
T PF14592_consen 252 NVFI-GNGVKEGTGGIRIIGEGHTIYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANNTFINCKSP 325 (425)
T ss_dssp -EEE-E-SSSS-B--EEE-SBS-EEES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-EEES-SEE
T ss_pred cEEe-cCCCcCCCCceEEecCCcEEEcceeeccccceeecceeeccCCCCCCcccccccceeEEecceEEccCCc
Confidence 9994 3332 234445 35544 78999986432 222111 112478899999988743
No 40
>PLN02176 putative pectinesterase
Probab=94.18 E-value=1.2 Score=45.74 Aligned_cols=119 Identities=18% Similarity=0.255 Sum_probs=74.9
Q ss_pred hHHHhhhc----CCCEEEEEeeeeEEeeCceEEe---ecCeeEeecCCceEEe---C------CceEEEEeeecEEEEee
Q 015702 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHIA---G------GPCITVQYVTNIIIHGI 173 (402)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I~---~------G~~i~i~~a~NVIIrnl 173 (402)
|+.+||.. +..+++|+-+.|+-+ +.|.| .+|+||.|.|...+|. + -..+.+ .+++++.+||
T Consensus 53 TIq~AIdavP~~~~~~~~I~Ik~GvY~--EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v-~a~~F~a~nl 129 (340)
T PLN02176 53 TVQSAIDSIPLQNQNWIRILIQNGIYR--EKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTS-YASNIIITGI 129 (340)
T ss_pred CHHHHHhhchhcCCceEEEEECCcEEE--EEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEE-ECCCEEEEee
Confidence 67777743 233566666666654 55666 5799999998765432 1 123444 6899999999
Q ss_pred EEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeEeeeCCceEEEEcceecc
Q 015702 174 NIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTH 245 (402)
Q Consensus 174 ~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~f~~ 245 (402)
.|++-.+-.+ +. ....+-|+-+. .++.+-+.+|.|.-..|=|.+- +..--+.+|++..
T Consensus 130 T~~Nt~~~~~------~~-----~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~---~gRqyf~~CyIeG 188 (340)
T PLN02176 130 TFKNTYNIAS------NS-----SRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDG---KGRHYYKRCVISG 188 (340)
T ss_pred EEEeCCCccC------CC-----CCCccceEEEEecCccEEEEccEEecccceeEeC---CcCEEEEecEEEe
Confidence 9998653110 00 01234566555 4677889999999888877762 3344555666654
No 41
>PLN02682 pectinesterase family protein
Probab=94.13 E-value=0.88 Score=47.12 Aligned_cols=119 Identities=18% Similarity=0.256 Sum_probs=74.1
Q ss_pred hHHHhhhc----CCCEEEEEeeeeEEeeCceEEe---ecCeeEeecCCceE-Ee----------CC--------ceEEEE
Q 015702 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IA----------GG--------PCITVQ 163 (402)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~----------~G--------~~i~i~ 163 (402)
|+.+||.. +..+++|+-+.|+ .++.|.| .+|+||.|.|...+ |. +| +.+. -
T Consensus 84 TIQ~AIdavP~~~~~r~vI~Ik~G~--Y~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~-v 160 (369)
T PLN02682 84 TIQAAIDSLPVINLVRVVIKVNAGT--YREKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFA-V 160 (369)
T ss_pred CHHHHHhhccccCCceEEEEEeCce--eeEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEE-E
Confidence 67777743 2235555555665 3456666 68999999987543 32 11 1122 3
Q ss_pred eeecEEEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeEeeeCCceEEEEcce
Q 015702 164 YVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNY 242 (402)
Q Consensus 164 ~a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~ 242 (402)
.+++++.+||.|++-.+.. .+ | ..++-|+.+. .++.+-+.+|.|....|=|.+- ...--+.+|+
T Consensus 161 ~a~~F~a~nlTf~Nt~~~~------~~---g---~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~ 225 (369)
T PLN02682 161 NSPYFIAKNITFKNTAPVP------PP---G---ALGKQAVALRISADTAAFYGCKFLGAQDTLYDH---LGRHYFKDCY 225 (369)
T ss_pred ECCCeEEEeeEEEcccccC------CC---C---CCcccEEEEEecCCcEEEEcceEeccccceEEC---CCCEEEEeeE
Confidence 6889999999999864311 00 0 1233455555 4788889999999988888762 3345556666
Q ss_pred eccc
Q 015702 243 MTHH 246 (402)
Q Consensus 243 f~~H 246 (402)
+..+
T Consensus 226 IeG~ 229 (369)
T PLN02682 226 IEGS 229 (369)
T ss_pred Eccc
Confidence 6643
No 42
>PLN02773 pectinesterase
Probab=93.69 E-value=1.1 Score=45.53 Aligned_cols=113 Identities=15% Similarity=0.203 Sum_probs=68.4
Q ss_pred hHHHhhhc----CCCEEEEEeeeeEEeeCceEEe---ecCeeEeecCCceE-Ee-C---------------C------ce
Q 015702 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IA-G---------------G------PC 159 (402)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~-~---------------G------~~ 159 (402)
|+..||.. +..+++||-+.|+ ..+.|.| .+|+||.|.+...+ |. + | +.
T Consensus 19 TIq~Aida~P~~~~~~~~I~Ik~G~--Y~E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~SaT 96 (317)
T PLN02773 19 TVQDAIDAVPLCNRCRTVIRVAPGV--YRQPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCGT 96 (317)
T ss_pred CHHHHHhhchhcCCceEEEEEeCce--EEEEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCceE
Confidence 67777643 2235566656665 3456666 56899999876543 22 0 1 12
Q ss_pred EEEEeeecEEEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeEeeeCCceEEE
Q 015702 160 ITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITI 238 (402)
Q Consensus 160 i~i~~a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliDv~~~s~~VTI 238 (402)
+.+ .++|++.+||.|++-.+. ..+-|+.+. .++.+-+.+|.|....|=|.+- ...--+
T Consensus 97 v~v-~a~~f~a~nlT~~Nt~~~-----------------~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~---~gr~yf 155 (317)
T PLN02773 97 VIV-EGEDFIAENITFENSAPE-----------------GSGQAVAIRVTADRCAFYNCRFLGWQDTLYLH---YGKQYL 155 (317)
T ss_pred EEE-ECCCeEEEeeEEEeCCCC-----------------CCCcEEEEEecCccEEEEccEeecccceeEeC---CCCEEE
Confidence 223 689999999999985331 124455554 4677889999988877777651 223444
Q ss_pred Ecceecc
Q 015702 239 SNNYMTH 245 (402)
Q Consensus 239 Snn~f~~ 245 (402)
.+|+++.
T Consensus 156 ~~c~IeG 162 (317)
T PLN02773 156 RDCYIEG 162 (317)
T ss_pred EeeEEee
Confidence 4555543
No 43
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=93.67 E-value=0.74 Score=49.89 Aligned_cols=114 Identities=16% Similarity=0.184 Sum_probs=70.8
Q ss_pred hHHHhhhc----CCCEEEEEeeeeEEeeCceEEe---ecCeeEeecCCceEE-e------CCce-----EEEEeeecEEE
Q 015702 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHI-A------GGPC-----ITVQYVTNIII 170 (402)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I-~------~G~~-----i~i~~a~NVII 170 (402)
|+.+||.. +..++|||-+.|+-+ +.|.| .+|+||.|.|...+| . +|.. -..-.+++++.
T Consensus 246 TIq~Av~a~p~~~~~r~vI~Vk~GvY~--E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v~~~~F~a 323 (537)
T PLN02506 246 TITEAINEAPNHSNRRYIIYVKKGVYK--ENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAVSGRGFIA 323 (537)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCeee--EEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEEEcCCeEE
Confidence 57777743 334667776667543 44555 589999999876543 2 1211 01236899999
Q ss_pred EeeEEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeEeeeCCceEEEEcceecc
Q 015702 171 HGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTH 245 (402)
Q Consensus 171 rnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~f~~ 245 (402)
+||.|++-... .++-|+-+. .++++-+.+|.|....|=|.+- +..--+.+|++..
T Consensus 324 ~nit~~Ntag~-----------------~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~---~~rqyy~~C~I~G 379 (537)
T PLN02506 324 RDITFRNTAGP-----------------QNHQAVALRVDSDQSAFYRCSMEGYQDTLYAH---SLRQFYRECEIYG 379 (537)
T ss_pred EeeEEEeCCCC-----------------CCCceEEEEecCCcEEEEcceeecccccceec---CCceEEEeeEEec
Confidence 99999975311 134555555 4788889999999887777651 2333445555543
No 44
>PLN02314 pectinesterase
Probab=93.62 E-value=0.66 Score=50.74 Aligned_cols=99 Identities=17% Similarity=0.278 Sum_probs=65.4
Q ss_pred hHHHhhhc----CCCEEEEEeeeeEEeeCceEEe---ecCeeEeecCCceEE-e------CCc------eEEEEeeecEE
Q 015702 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHI-A------GGP------CITVQYVTNII 169 (402)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I-~------~G~------~i~i~~a~NVI 169 (402)
|+.+||.. +..++||+-+.|+- ++.|.| ..|+|+.|.|..-+| . +|. .+. -.+++++
T Consensus 292 TI~~Av~a~p~~~~~r~vI~ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~-v~~~~F~ 368 (586)
T PLN02314 292 TINEAVASIPKKSKSRFVIYVKEGTY--VENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFA-AAGKGFI 368 (586)
T ss_pred CHHHHHhhccccCCceEEEEEcCceE--EEEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEE-EEcCCeE
Confidence 67778743 33467777777764 355555 578999999876543 2 121 112 2689999
Q ss_pred EEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeE
Q 015702 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLID 228 (402)
Q Consensus 170 Irnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliD 228 (402)
.|||.|++-... ...-|+-++ +++..-+.+|.|....|=|.+
T Consensus 369 a~~itf~Ntag~-----------------~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~ 411 (586)
T PLN02314 369 AKDMGFINTAGA-----------------AKHQAVAFRSGSDMSVFYQCSFDAFQDTLYA 411 (586)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEecCCcEEEEeeEEEeccchhee
Confidence 999999985321 234566665 577788999999887766654
No 45
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=93.53 E-value=0.86 Score=49.56 Aligned_cols=99 Identities=14% Similarity=0.214 Sum_probs=64.9
Q ss_pred hHHHhhhc-----CCCEEEEEeeeeEEeeCceEEe---ecCeeEeecCCceEEe--------CC------ceEEEEeeec
Q 015702 110 TLRYAVIQ-----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHIA--------GG------PCITVQYVTN 167 (402)
Q Consensus 110 tLr~av~~-----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I~--------~G------~~i~i~~a~N 167 (402)
|+.+||.. .+.+.||+-+.|+-+ +.|.| ..|+||.|.|...+|. +| +.+. ..+++
T Consensus 255 TIq~Av~a~p~~~~~~r~vI~vk~GvY~--E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~saT~~-v~~~~ 331 (553)
T PLN02708 255 TVQEAVNAAPDNNGDRKFVIRIKEGVYE--ETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVG-VLGDG 331 (553)
T ss_pred CHHHHHHhhhhccCCccEEEEEeCceEE--eeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceEEEE-EEcCC
Confidence 67777743 133667776777644 45554 6799999998765432 22 1122 36899
Q ss_pred EEEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeE
Q 015702 168 IIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLID 228 (402)
Q Consensus 168 VIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliD 228 (402)
++.+||.|++-... ..+-|+-++ .++.+-+.+|.|....|=|..
T Consensus 332 f~a~~it~~Ntag~-----------------~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~ 376 (553)
T PLN02708 332 FMARDLTIQNTAGP-----------------DAHQAVAFRSDSDLSVIENCEFLGNQDTLYA 376 (553)
T ss_pred eEEEeeEEEcCCCC-----------------CCCceEEEEecCCcEEEEeeeeeecccccee
Confidence 99999999975310 234566666 578888999999887665553
No 46
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=93.50 E-value=1 Score=48.83 Aligned_cols=113 Identities=19% Similarity=0.261 Sum_probs=72.3
Q ss_pred hHHHhhhc------CCCEEEEEeeeeEEeeCceEEe---ecCeeEeecCCceE-EeC------Cc------eEEEEeeec
Q 015702 110 TLRYAVIQ------DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IAG------GP------CITVQYVTN 167 (402)
Q Consensus 110 tLr~av~~------~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~------G~------~i~i~~a~N 167 (402)
|+.+||.. +..+++|+-+.|+- ++.|.| .+|+|+.|.|...+ |.+ |. .+. -.+++
T Consensus 237 TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~SaT~~-v~~~~ 313 (539)
T PLN02995 237 TVQAAIDVAGRRKVTSGRFVIYVKRGIY--QENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSATAG-IEGLH 313 (539)
T ss_pred CHHHHHHhcccccCCCceEEEEEeCCEe--EEEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceEEEE-EECCC
Confidence 67778753 12356666666663 345555 57999999987644 321 11 122 26899
Q ss_pred EEEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeEeeeCCceEEEEcceecc
Q 015702 168 IIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTH 245 (402)
Q Consensus 168 VIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~f~~ 245 (402)
++.+||.|++-... ..+-|+-+. .++...+.+|.|....|=|.+- +..--+.+|++..
T Consensus 314 F~a~nitf~Ntag~-----------------~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~---~~Rqyy~~C~I~G 372 (539)
T PLN02995 314 FIAKGITFRNTAGP-----------------AKGQAVALRSSSDLSIFYKCSIEGYQDTLMVH---SQRQFYRECYIYG 372 (539)
T ss_pred eEEEeeEEEeCCCC-----------------CCCceEEEEEcCCceeEEcceEecccchhccC---CCceEEEeeEEee
Confidence 99999999975311 235666666 5788889999999988877652 2334445555543
No 47
>PLN02634 probable pectinesterase
Probab=93.30 E-value=1.8 Score=44.77 Aligned_cols=119 Identities=18% Similarity=0.315 Sum_probs=73.2
Q ss_pred hHHHhhhc----CCCEEEEEeeeeEEeeCceEEe---ecCeeEeecCCceEEe-----------CC--------ceEEEE
Q 015702 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHIA-----------GG--------PCITVQ 163 (402)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I~-----------~G--------~~i~i~ 163 (402)
|+.+||.. +..+++|+-+.|+ .++.|.| .+|+||.|.|...+|. +| +.+.+
T Consensus 70 TIQaAIda~P~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V- 146 (359)
T PLN02634 70 SVQDAVDSVPKNNTMSVTIKINAGF--YREKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTV- 146 (359)
T ss_pred CHHHHHhhCcccCCccEEEEEeCce--EEEEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEE-
Confidence 56667643 2234555555666 3455665 6799999998765442 11 11222
Q ss_pred eeecEEEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeEeeeCCceEEEEcce
Q 015702 164 YVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNY 242 (402)
Q Consensus 164 ~a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~ 242 (402)
.+++++.+||.|++-.+.. .+ | ..++-|+.+. .++..-+.+|.|....|=|.+ ....--+.+|+
T Consensus 147 ~a~~F~a~niTf~Nta~~~------~~---g---~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~---~~gR~yf~~Cy 211 (359)
T PLN02634 147 YANYFTARNISFKNTAPAP------MP---G---MQGWQAVAFRISGDKAFFFGCGFYGAQDTLCD---DAGRHYFKECY 211 (359)
T ss_pred ECCCeEEEeCeEEeCCccC------CC---C---CCCCceEEEEecCCcEEEEEeEEecccceeee---CCCCEEEEeeE
Confidence 6889999999999865321 00 1 1234555555 467788999999988888775 23344555666
Q ss_pred eccc
Q 015702 243 MTHH 246 (402)
Q Consensus 243 f~~H 246 (402)
+..+
T Consensus 212 IeG~ 215 (359)
T PLN02634 212 IEGS 215 (359)
T ss_pred Eccc
Confidence 6543
No 48
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=93.27 E-value=1 Score=48.56 Aligned_cols=113 Identities=15% Similarity=0.179 Sum_probs=69.6
Q ss_pred hHHHhhhc----CCCEEEEEeeeeEEeeCceEEe---ecCeeEeecCCceE-Ee------CCc------eEEEEeeecEE
Q 015702 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IA------GGP------CITVQYVTNII 169 (402)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~------~G~------~i~i~~a~NVI 169 (402)
|+.+||.. +..+++|+-+.|+- ++.|.| .+|+||.|.|...+ |. +|. .+. -.+++++
T Consensus 220 TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~-v~~~~F~ 296 (520)
T PLN02201 220 TIMDAVLAAPDYSTKRYVIYIKKGVY--LENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFA-VSGRGFI 296 (520)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCcee--EEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEEE-EECCCeE
Confidence 67777643 22355666566654 355655 56899999987543 32 221 122 3689999
Q ss_pred EEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeEeeeCCceEEEEcceecc
Q 015702 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTH 245 (402)
Q Consensus 170 Irnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~f~~ 245 (402)
.+||.|++-.+. ..+-|+-+. .++..-+.+|.|....|=|.+- +..--+.+|++..
T Consensus 297 a~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~---~~Rqyy~~C~I~G 353 (520)
T PLN02201 297 ARDITFQNTAGP-----------------EKHQAVALRSDSDLSVFYRCAMRGYQDTLYTH---TMRQFYRECRITG 353 (520)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEeeeeeccCCeeEeC---CCCEEEEeeEEee
Confidence 999999985321 134556655 4678889999998887777652 2233334555543
No 49
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=93.26 E-value=1 Score=48.34 Aligned_cols=99 Identities=17% Similarity=0.274 Sum_probs=65.3
Q ss_pred hHHHhhhc----CCCEEEEEeeeeEEeeCceEEe---ecCeeEeecCCceEEe-------CCc------eEEEEeeecEE
Q 015702 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHIA-------GGP------CITVQYVTNII 169 (402)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I~-------~G~------~i~i~~a~NVI 169 (402)
|+.+||.. +..+++|+-+.|+- ++.|.| .+|+||.|.|...+|. +|. .+. -.++++|
T Consensus 211 TIq~AI~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv~-v~g~gF~ 287 (509)
T PLN02488 211 TVNAAIAAAPEHSRKRFVIYIKTGVY--DEIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATVA-SNGDGFI 287 (509)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCee--EEEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEEE-EEcCCeE
Confidence 67778743 23356666666653 455666 5799999998765432 121 111 2688999
Q ss_pred EEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeE
Q 015702 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLID 228 (402)
Q Consensus 170 Irnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliD 228 (402)
.+||.|++-... ..+-|+-+. .++..-+.+|.|....|=|.+
T Consensus 288 A~nitf~Ntag~-----------------~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~ 330 (509)
T PLN02488 288 GIDMCFRNTAGP-----------------AKGPAVALRVSGDMSVIYRCRIEGYQDALYP 330 (509)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEecCCcEEEEcceeeccCcceee
Confidence 999999975321 235677766 578888999999987776654
No 50
>PLN02665 pectinesterase family protein
Probab=93.11 E-value=1.6 Score=45.09 Aligned_cols=128 Identities=14% Similarity=0.191 Sum_probs=78.5
Q ss_pred hHHHhhhc----CCCEEEEEeeeeEEeeCceEEe---ecCeeEeecCCceE-EeC-----------CceEEEEeeecEEE
Q 015702 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IAG-----------GPCITVQYVTNIII 170 (402)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~-----------G~~i~i~~a~NVII 170 (402)
|+.+||.. +..++||+-+.|+- ++.|.| ++|+|+.|.+...+ |.. -+.+. -.+++++.
T Consensus 82 TIq~AIdaiP~~~~~r~vI~Ik~GvY--~EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~-v~a~~F~a 158 (366)
T PLN02665 82 TITDAIKSIPAGNTQRVIIDIGPGEY--NEKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLI-VESDYFMA 158 (366)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcEE--EEEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEE-EECCCeEE
Confidence 67788743 23366777777754 466666 67899999976543 321 12222 36899999
Q ss_pred EeeEEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeEeeeCCceEEEEcceecccCee
Q 015702 171 HGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKV 249 (402)
Q Consensus 171 rnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~f~~H~k~ 249 (402)
+||.|++-.+...+ . ..++-|+.+. .++..-+.+|.|....|=|.+- ...--+.+|++..+=.
T Consensus 159 ~nitf~Nta~~~~~------~------~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~---~gr~yf~~CyIeG~VD- 222 (366)
T PLN02665 159 ANIIIKNSAPRPDG------K------RKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDD---KGRHFFKDCYIEGTVD- 222 (366)
T ss_pred EeeEEEeCCCCcCC------C------CCCcceEEEEEcCCcEEEEcceeccccceeEeC---CCCEEEEeeEEeeccc-
Confidence 99999986542110 0 1123455554 4677889999999999988862 2344455666654311
Q ss_pred eecCCCC
Q 015702 250 MLLGHSD 256 (402)
Q Consensus 250 ~LiG~sd 256 (402)
.++|...
T Consensus 223 FIFG~g~ 229 (366)
T PLN02665 223 FIFGSGK 229 (366)
T ss_pred eeccccc
Confidence 2455543
No 51
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=92.99 E-value=1.1 Score=45.91 Aligned_cols=93 Identities=16% Similarity=0.176 Sum_probs=69.1
Q ss_pred EEeecCeeEeecCCceEEeCCceEEEEeeecEEEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEeCCceEEEEe
Q 015702 137 LIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDH 216 (402)
Q Consensus 137 L~v~snkTI~G~ga~~~I~~G~~i~i~~a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~gs~nVWIDH 216 (402)
|.+....|-++.-.+--|+...+|.+.++..+.|...+|..-.. .|....|+||+++++...-|--
T Consensus 100 I~v~~~at~A~Vr~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~--------------~r~~~rGnGI~vyNa~~a~V~~ 165 (408)
T COG3420 100 IFVGRTATGAVVRHNDLIGNSFGIYLHGSADVRIEGNTIQGLAD--------------LRVAERGNGIYVYNAPGALVVG 165 (408)
T ss_pred EEeccCcccceEEcccccccceEEEEeccCceEEEeeEEeeccc--------------cchhhccCceEEEcCCCcEEEc
Confidence 44455555555433334556778899999999999999975321 1223579999999999999999
Q ss_pred eEecCCCCCeeEeeeCCceEEEEcceecc
Q 015702 217 CSLSNCNDGLIDAIHGSTAITISNNYMTH 245 (402)
Q Consensus 217 cs~s~~~DgliDv~~~s~~VTISnn~f~~ 245 (402)
+.+|...||... ..|+.-+++.|.|++
T Consensus 166 ndisy~rDgIy~--~~S~~~~~~gnr~~~ 192 (408)
T COG3420 166 NDISYGRDGIYS--DTSQHNVFKGNRFRD 192 (408)
T ss_pred CccccccceEEE--cccccceecccchhh
Confidence 999999999875 457777788887775
No 52
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=92.98 E-value=1.3 Score=48.12 Aligned_cols=99 Identities=16% Similarity=0.258 Sum_probs=65.3
Q ss_pred hHHHhhhc---C----CCEEEEEeeeeEEeeCceEEe---ecCeeEeecCCceEEe-------CC------ceEEEEeee
Q 015702 110 TLRYAVIQ---D----EPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHIA-------GG------PCITVQYVT 166 (402)
Q Consensus 110 tLr~av~~---~----~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I~-------~G------~~i~i~~a~ 166 (402)
|+.+||.. . .-++||+-+.|+-+ +.|.| ..|+||.|.|...+|. +| +.+.+ .++
T Consensus 237 TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~v-~~~ 313 (538)
T PLN03043 237 TITDAIAAAPNNSKPEDGYFVIYAREGYYE--EYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFAV-SGE 313 (538)
T ss_pred CHHHHHHhccccCCCCcceEEEEEcCeeeE--EEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEEE-ECC
Confidence 67778743 1 12667777777643 55655 6799999998765432 23 12223 679
Q ss_pred cEEEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeE
Q 015702 167 NIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLID 228 (402)
Q Consensus 167 NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliD 228 (402)
++|.+||.|++-... ..+-|+-++ .++..-+.+|+|....|=|.+
T Consensus 314 ~F~a~~it~~Ntag~-----------------~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~ 359 (538)
T PLN03043 314 RFVAVDVTFRNTAGP-----------------EKHQAVALRNNADLSTFYRCSFEGYQDTLYV 359 (538)
T ss_pred CEEEEeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEeeEEeccCccccc
Confidence 999999999975311 234566666 467788999999887666554
No 53
>PLN02304 probable pectinesterase
Probab=92.72 E-value=2.1 Score=44.54 Aligned_cols=119 Identities=18% Similarity=0.252 Sum_probs=76.2
Q ss_pred hHHHhhhc----CCCEEEEEeeeeEEeeCceEEe---ecCeeEeecCCceEE-e--CC----------ceEEEEeeecEE
Q 015702 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHI-A--GG----------PCITVQYVTNII 169 (402)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I-~--~G----------~~i~i~~a~NVI 169 (402)
|+.+||.. +..+++|+-+.|+ ..+.|.| ++|+||.|.|...+| . +. +.+. ..+++++
T Consensus 89 TIQ~AIdavP~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~-v~a~~F~ 165 (379)
T PLN02304 89 TVQSAVDAVGNFSQKRNVIWINSGI--YYEKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQ-VFASNFI 165 (379)
T ss_pred CHHHHHhhCcccCCCcEEEEEeCeE--eEEEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEE-EECCCeE
Confidence 67778743 2335666666665 3466766 689999999876433 2 01 1122 2589999
Q ss_pred EEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeEeeeCCceEEEEcceeccc
Q 015702 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHH 246 (402)
Q Consensus 170 Irnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~f~~H 246 (402)
.+||.|++..+.. .+ + ..++-|+-+. .++.+-+.+|.|.-..|=|.+- ...--+.+|++..+
T Consensus 166 a~nITf~Nta~~~------~~---g---~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~---~gR~Yf~~CyIeG~ 228 (379)
T PLN02304 166 AKNISFMNVAPIP------KP---G---DVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDD---RGRHYFKDCYIQGS 228 (379)
T ss_pred EEeeEEEecCCCC------CC---C---CCCccEEEEEecCCcEEEEeceEecccceeEeC---CCCEEEEeeEEccc
Confidence 9999999865321 00 0 1234566665 5788889999999999988762 33445667776643
No 54
>PLN02916 pectinesterase family protein
Probab=92.61 E-value=1.4 Score=47.33 Aligned_cols=112 Identities=15% Similarity=0.135 Sum_probs=70.4
Q ss_pred hHHHhhhc-------CCCEEEEEeeeeEEeeCceEEe---ecCeeEeecCCceEEe-------CCc------eEEEEeee
Q 015702 110 TLRYAVIQ-------DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHIA-------GGP------CITVQYVT 166 (402)
Q Consensus 110 tLr~av~~-------~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I~-------~G~------~i~i~~a~ 166 (402)
|+.+||.. +..+++|+-+.|+-+ +.|.| .+|+||.|.|...+|. +|. .+. ..++
T Consensus 201 TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~-v~~~ 277 (502)
T PLN02916 201 TINQALAALSRMGKSRTNRVIIYVKAGVYN--EKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFG-VSGD 277 (502)
T ss_pred CHHHHHHhcccccCCCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEE-EECC
Confidence 67777733 234677776677544 55655 5689999998765432 221 122 3688
Q ss_pred cEEEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeEeeeCCceEEEEcceec
Q 015702 167 NIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMT 244 (402)
Q Consensus 167 NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~f~ 244 (402)
+++.+||.|++-.+. ..+-|+-+. .++..-+.+|.|.-..|=|.+- +..--+.+|++.
T Consensus 278 ~F~A~nitf~Ntag~-----------------~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~---~~Rqyy~~C~I~ 336 (502)
T PLN02916 278 GFWARDITFENTAGP-----------------HKHQAVALRVSSDLSVFYRCSFKGYQDTLFVH---SLRQFYRDCHIY 336 (502)
T ss_pred CEEEEeeEEEeCCCC-----------------CCCceEEEEEcCCcEEEEeeeEeccCceeEeC---CCCEEEEecEEe
Confidence 999999999975321 123455555 4677889999998887777652 223344455554
No 55
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=92.53 E-value=1.3 Score=48.56 Aligned_cols=101 Identities=19% Similarity=0.264 Sum_probs=65.2
Q ss_pred hHHHhhhc----CCCEEEEEeeeeEEeeCceEEe---ecCeeEeecCCceE-EeCCce----E-E------EEeeecEEE
Q 015702 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IAGGPC----I-T------VQYVTNIII 170 (402)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~~G~~----i-~------i~~a~NVII 170 (402)
|+.+||.. +..++||+-+.|+-+=+ .|.| .+|+||.|.|...+ |.++.. . + ...+++++.
T Consensus 286 TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~-~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v~~~~F~a 364 (587)
T PLN02484 286 TISEAIKKAPEHSSRRTIIYVKAGRYEEN-NLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAATGAGFIA 364 (587)
T ss_pred cHHHHHHhccccCCCcEEEEEeCCEEEEE-EEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEEEcCCEEE
Confidence 67778743 33467777677765421 2555 67999999987654 322111 0 1 126899999
Q ss_pred EeeEEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeE
Q 015702 171 HGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLID 228 (402)
Q Consensus 171 rnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliD 228 (402)
|||.|++-.+. ..+-|+-+. .++..-+.+|.|....|=|.+
T Consensus 365 ~~itf~Ntag~-----------------~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~ 406 (587)
T PLN02484 365 RDMTFENWAGP-----------------AKHQAVALRVGADHAVVYRCNIIGYQDTLYV 406 (587)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEecCCcEEEEeeeEeccCccccc
Confidence 99999985321 234566665 477788999999887776665
No 56
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=92.44 E-value=1.3 Score=49.14 Aligned_cols=115 Identities=16% Similarity=0.231 Sum_probs=74.9
Q ss_pred hHHHhhhc----CCCEEEEEeeeeEEeeCceEEe---ecCeeEeecCCceEEe-------CCc------eEEEEeeecEE
Q 015702 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHIA-------GGP------CITVQYVTNII 169 (402)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I~-------~G~------~i~i~~a~NVI 169 (402)
|+.+||.. ...++||+-+.|+ .++.|.| ..|+||.|.|...+|. +|. .+. -.+++++
T Consensus 264 TIq~Av~a~P~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~~-v~g~~F~ 340 (670)
T PLN02217 264 TINEALNFVPKKKNTTFVVHIKAGI--YKEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVA-IVGDHFI 340 (670)
T ss_pred CHHHHHHhccccCCceEEEEEeCCc--eEEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEEE-EECCCeE
Confidence 67778753 2336666666664 3455666 4688999998765432 221 122 2689999
Q ss_pred EEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCC-----------------CCeeEeee
Q 015702 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCN-----------------DGLIDAIH 231 (402)
Q Consensus 170 Irnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~-----------------DgliDv~~ 231 (402)
.|||.|++-... .++-|+-++ .++..-+.+|.|.... .|.+|.+-
T Consensus 341 a~nitf~Ntag~-----------------~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIF 403 (670)
T PLN02217 341 AKNIGFENTAGA-----------------IKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLF 403 (670)
T ss_pred EEeeEEEeCCCC-----------------CCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEe
Confidence 999999975321 234566665 4677778888887643 45566666
Q ss_pred CCceEEEEcceec
Q 015702 232 GSTAITISNNYMT 244 (402)
Q Consensus 232 ~s~~VTISnn~f~ 244 (402)
|.-..-+++|.+.
T Consensus 404 G~a~avfq~C~I~ 416 (670)
T PLN02217 404 GDAAAVFQNCTLL 416 (670)
T ss_pred cCceEEEEccEEE
Confidence 7777788888885
No 57
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=92.35 E-value=1.8 Score=47.38 Aligned_cols=99 Identities=15% Similarity=0.220 Sum_probs=64.7
Q ss_pred hHHHhhhc----CCCEEEEEeeeeEEeeCceEEe---ecCeeEeecCCceE-Ee------CC-c------eEEEEeeecE
Q 015702 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IA------GG-P------CITVQYVTNI 168 (402)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~------~G-~------~i~i~~a~NV 168 (402)
|+.+||.. +..+++|+-+.|+-+ +.|.| .+|+||.|.|...+ |. +| . .+. -.++++
T Consensus 273 TIq~Av~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT~~-v~~~~F 349 (572)
T PLN02990 273 TINEALNAVPKANQKPFVIYIKQGVYN--EKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTATVA-INGDHF 349 (572)
T ss_pred CHHHHHhhCcccCCceEEEEEeCceeE--EEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeEEE-EEcCCE
Confidence 67778743 233566666667443 55656 57999999987543 32 11 1 111 268999
Q ss_pred EEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeE
Q 015702 169 IIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLID 228 (402)
Q Consensus 169 IIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliD 228 (402)
+.|||.|++-.+. .++-|+-++ .++..-+.+|.|....|=|.+
T Consensus 350 ~a~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~ 393 (572)
T PLN02990 350 TAKNIGFENTAGP-----------------EGHQAVALRVSADYAVFYNCQIDGYQDTLYV 393 (572)
T ss_pred EEEeeEEEeCCCC-----------------CCCceEEEEEcCCcEEEEeeeEecccchhcc
Confidence 9999999975321 234566666 577788999999887766654
No 58
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=92.34 E-value=1.3 Score=48.40 Aligned_cols=98 Identities=17% Similarity=0.247 Sum_probs=62.6
Q ss_pred hHHHhhhc----CCCEEEEEeeeeEEeeCceEEe---ecCeeEeecCCceEEe-------CC------ceEEEEeeecEE
Q 015702 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHIA-------GG------PCITVQYVTNII 169 (402)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I~-------~G------~~i~i~~a~NVI 169 (402)
|+.+||.. ...++||+-+.|+- ++.|.| ..|+||.|.|...+|. +| +.+. -.+++++
T Consensus 289 TI~~Av~a~p~~~~~r~vI~ik~GvY--~E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~-v~~~~F~ 365 (587)
T PLN02313 289 TVAAAVAAAPEKSNKRFVIHIKAGVY--RENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVA-AVGERFL 365 (587)
T ss_pred cHHHHHHhccccCCceEEEEEeCcee--EEEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEE-EECCCeE
Confidence 67777743 23366777666753 355655 5689999998765432 22 1122 2689999
Q ss_pred EEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCee
Q 015702 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLI 227 (402)
Q Consensus 170 Irnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~Dgli 227 (402)
.+||.|++-... ...-|+-+. +++..-+-+|.|....|=|.
T Consensus 366 a~~itf~Ntag~-----------------~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy 407 (587)
T PLN02313 366 ARDITFQNTAGP-----------------SKHQAVALRVGSDFSAFYQCDMFAYQDTLY 407 (587)
T ss_pred EEeeEEEeCCCC-----------------CCCceEEEEecCCcEEEEeeeEecccchhc
Confidence 999999985321 133455555 57778899999987655444
No 59
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=91.87 E-value=2.5 Score=46.44 Aligned_cols=113 Identities=14% Similarity=0.197 Sum_probs=70.8
Q ss_pred hHHHhhhc----CCCEEEEEeeeeEEeeCceEEe---ecCeeEeecCCceEEe-------CCc------eEEEEeeecEE
Q 015702 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHIA-------GGP------CITVQYVTNII 169 (402)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I~-------~G~------~i~i~~a~NVI 169 (402)
|+.+||.. ...+++|+-+.|+-+ +.|.| .+|+||.|.|...+|. +|. .+. -.+++++
T Consensus 299 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~-v~~~~F~ 375 (596)
T PLN02745 299 TISDALAAMPAKYEGRYVIYVKQGIYD--ETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATFV-ALGEGFM 375 (596)
T ss_pred cHHHHHHhccccCCceEEEEEeCCeeE--EEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEEE-EEcCCEE
Confidence 67778754 233566666667544 55666 5699999998765432 121 112 2689999
Q ss_pred EEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeEeeeCCceEEEEcceecc
Q 015702 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTH 245 (402)
Q Consensus 170 Irnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~f~~ 245 (402)
.+||.|++-... ..+-|+-+. .++..-+.+|.|....|=|.+- +..--+.+|++..
T Consensus 376 a~nitf~Ntag~-----------------~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~---~~Rqyy~~C~I~G 432 (596)
T PLN02745 376 AKSMGFRNTAGP-----------------EKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQ---THRQFYRSCVITG 432 (596)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEeeEEeecccccccC---CCcEEEEeeEEEe
Confidence 999999985321 134555555 4788889999999877776651 2233444555543
No 60
>PLN02497 probable pectinesterase
Probab=91.26 E-value=4.1 Score=41.71 Aligned_cols=120 Identities=16% Similarity=0.257 Sum_probs=73.2
Q ss_pred hHHHhhhc----CCCEEEEEeeeeEEeeCceEEe---ecCeeEeecCCceE-Ee--C------CceEEEEeeecEEEEee
Q 015702 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IA--G------GPCITVQYVTNIIIHGI 173 (402)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~--~------G~~i~i~~a~NVIIrnl 173 (402)
|+.+||.. ...+++|+-+.|+- ++.|.| ++++||.|.|...+ |. + -..+.+ .+++++.+||
T Consensus 46 TIq~AIdavP~~~~~~~~I~Ik~G~Y--~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v-~a~~f~a~nl 122 (331)
T PLN02497 46 TIQSAIDSVPSNNKHWFCINVKAGLY--REKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFST-LADNTVVKSI 122 (331)
T ss_pred CHHHHHhhccccCCceEEEEEeCcEE--EEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEE-ecCCeEEEcc
Confidence 56777643 23355555556643 455655 68999999987543 22 1 112333 6899999999
Q ss_pred EEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeEeeeCCceEEEEcceecc
Q 015702 174 NIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTH 245 (402)
Q Consensus 174 ~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~f~~ 245 (402)
.|++-.+... . +- ...++-|+.+. .++.+-+.+|.|....|=|.+- ...--+.+|++..
T Consensus 123 T~~Nt~~~~~--------~-~~-~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~IeG 182 (331)
T PLN02497 123 TFANSYNFPS--------K-GN-KNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDS---DGRHYFKRCTIQG 182 (331)
T ss_pred EEEeCCCCcc--------c-cC-CCCCcceEEEEecCCcEEEEeeEEeccccceeeC---CCcEEEEeCEEEe
Confidence 9998643100 0 00 00133466665 5778889999999999988762 3344555666654
No 61
>PLN02671 pectinesterase
Probab=91.26 E-value=4.1 Score=42.15 Aligned_cols=117 Identities=15% Similarity=0.210 Sum_probs=71.3
Q ss_pred hHHHhhhc----CCCEEEEEeeeeEEeeCceEEe---ecCeeEeecCC---ceEEe----------CC--------ceEE
Q 015702 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGA---SVHIA----------GG--------PCIT 161 (402)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga---~~~I~----------~G--------~~i~ 161 (402)
|+.+||.. +..+++|+-+.|+ .++.|.| .+++||.|.|. +..|. +| +.+.
T Consensus 73 TIQ~AIdavP~~~~~~~~I~Ik~Gv--Y~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv~ 150 (359)
T PLN02671 73 TVQGAVDMVPDYNSQRVKIYILPGI--YREKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASVT 150 (359)
T ss_pred CHHHHHHhchhcCCccEEEEEeCce--EEEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEEE
Confidence 56777643 2234555655664 3456666 68999999874 23343 11 1122
Q ss_pred EEeeecEEEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeEeeeCCceEEEEc
Q 015702 162 VQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISN 240 (402)
Q Consensus 162 i~~a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliDv~~~s~~VTISn 240 (402)
..+++++.+||.|++-.+...+ ...+-|+.+. .++.+-+.+|.|.-..|=|++- ...--+.+
T Consensus 151 -v~a~~F~a~nitfeNt~~~~~g-------------~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~ 213 (359)
T PLN02671 151 -IESDYFCATGITFENTVVAEPG-------------GQGMQAVALRISGDKAFFYKVRVLGAQDTLLDE---TGSHYFYQ 213 (359)
T ss_pred -EECCceEEEeeEEEcCCCCCCC-------------CCCccEEEEEEcCccEEEEcceEeccccccEeC---CCcEEEEe
Confidence 3679999999999986321100 1233455554 4688889999999988888762 23445556
Q ss_pred ceecc
Q 015702 241 NYMTH 245 (402)
Q Consensus 241 n~f~~ 245 (402)
|++..
T Consensus 214 CyIeG 218 (359)
T PLN02671 214 CYIQG 218 (359)
T ss_pred cEEEE
Confidence 66654
No 62
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=91.14 E-value=2.2 Score=46.54 Aligned_cols=99 Identities=16% Similarity=0.237 Sum_probs=63.9
Q ss_pred hHHHhhhc----CCCEEEEEeeeeEEeeCceEEe---ecCeeEeecCCceEE-e------CCc------eEEEEeeecEE
Q 015702 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHI-A------GGP------CITVQYVTNII 169 (402)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I-~------~G~------~i~i~~a~NVI 169 (402)
|+.+||.. +..++||+-+.|+- ++.|.| ..|+||.|.|...+| . +|. .+. -.+++++
T Consensus 272 tI~~Av~a~p~~~~~~~vI~ik~GvY--~E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~-v~~~~f~ 348 (565)
T PLN02468 272 TISEALKDVPEKSEKRTIIYVKKGVY--FENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFA-VFGKGFM 348 (565)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCce--EEEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeee-EECCCeE
Confidence 66777743 23356666666754 355555 568999999876543 2 121 122 2578999
Q ss_pred EEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeE
Q 015702 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLID 228 (402)
Q Consensus 170 Irnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliD 228 (402)
.|||.|++-... .+.-|+-+. .++..-+.+|.|....|=|.+
T Consensus 349 a~~itf~Ntag~-----------------~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~ 391 (565)
T PLN02468 349 ARDMGFRNTAGP-----------------IKHQAVALMSSADLSVFYRCTMDAFQDTLYA 391 (565)
T ss_pred EEEEEEEeCCCC-----------------CCCceEEEEEcCCcEEEEEeEEEeccchhcc
Confidence 999999975311 234566665 578888999999887666554
No 63
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=90.76 E-value=3.4 Score=44.77 Aligned_cols=113 Identities=18% Similarity=0.196 Sum_probs=69.4
Q ss_pred hHHHhhhc----CCCEEEEEeeeeEEeeCceEEe---ecCeeEeecCCceE-Ee------CCc------eEEEEeeecEE
Q 015702 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IA------GGP------CITVQYVTNII 169 (402)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~------~G~------~i~i~~a~NVI 169 (402)
|+.+||.. ...+++|+-+.|+-+ +.|.| .+|+||.|.|...+ |. +|. .+. ..+++++
T Consensus 232 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT~~-v~a~~F~ 308 (530)
T PLN02933 232 TINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATVG-VKGKGFI 308 (530)
T ss_pred CHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceEEE-EECCCEE
Confidence 56666633 223455555555544 45555 67899999886543 32 121 122 2689999
Q ss_pred EEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeEeeeCCceEEEEcceecc
Q 015702 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTH 245 (402)
Q Consensus 170 Irnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~f~~ 245 (402)
.+||.|++-.+. ..+-|+-+. .++..-+.+|.|....|=|.+- +..--+.+|++..
T Consensus 309 a~nitf~Ntag~-----------------~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~---~~Rqyy~~C~IeG 365 (530)
T PLN02933 309 AKDISFVNYAGP-----------------AKHQAVALRSGSDHSAFYRCEFDGYQDTLYVH---SAKQFYRECDIYG 365 (530)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEEeEEEecccccccC---CCceEEEeeEEec
Confidence 999999975321 234566665 5788889999999888777652 2334455555553
No 64
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=90.36 E-value=1 Score=48.75 Aligned_cols=144 Identities=15% Similarity=0.194 Sum_probs=86.5
Q ss_pred CCCEEEEEeeeeEEeeCc------eE----Ee-ecCeeEeecCCce-EEeCCceEEEEeeecEEEEeeEEeecccCCCcc
Q 015702 118 DEPLWIIFARDMVITLKE------EL----IM-NSFKTIDGRGASV-HIAGGPCITVQYVTNIIIHGINIHDCKRGGNAN 185 (402)
Q Consensus 118 ~~P~~IvF~~~g~I~L~~------~L----~v-~snkTI~G~ga~~-~I~~G~~i~i~~a~NVIIrnl~i~~~~~g~~~~ 185 (402)
..|+.|.|...-.+.+.. ++ .+ -+|.||.+..-+. ++.+--+|.+..++||.|.+.+|.. +++++
T Consensus 236 ~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fdt---gDD~I 312 (542)
T COG5434 236 VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFDT---GDDCI 312 (542)
T ss_pred cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCCCCCccccccceeEEEeccEEec---CCceE
Confidence 478999998766555431 11 11 4555555543221 0101125778899999999999973 33333
Q ss_pred cccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeEeee---CCceEEEEcceecccCeeeecCCCCcccCC
Q 015702 186 VRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAIH---GSTAITISNNYMTHHNKVMLLGHSDTFTQD 261 (402)
Q Consensus 186 i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliDv~~---~s~~VTISnn~f~~H~k~~LiG~sd~~~~d 261 (402)
..-+- ...|+-... -+++|||-||.|+.++-+++.-.+ +-.+|++-+|.|.+-+.+..|...+.-. -
T Consensus 313 ~iksg--------~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~g-G 383 (542)
T COG5434 313 AIKSG--------AGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRG-G 383 (542)
T ss_pred Eeecc--------cCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCcceeeeeeecccc-e
Confidence 21110 111211122 268899999999998888876333 4579999999999988887776554322 1
Q ss_pred CcceEEEEceee
Q 015702 262 KNMQVTIAFNHF 273 (402)
Q Consensus 262 ~~~~vTihhN~f 273 (402)
..-+++|+-|.-
T Consensus 384 ~v~nI~~~~~~~ 395 (542)
T COG5434 384 GVRNIVFEDNKM 395 (542)
T ss_pred eEEEEEEecccc
Confidence 123455555544
No 65
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=90.13 E-value=4.7 Score=44.10 Aligned_cols=99 Identities=19% Similarity=0.277 Sum_probs=64.0
Q ss_pred hHHHhhhc-------CCCEEEEEeeeeEEeeCceEEe---ecCeeEeecCCceE-Ee------CCc------eEEEEeee
Q 015702 110 TLRYAVIQ-------DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IA------GGP------CITVQYVT 166 (402)
Q Consensus 110 tLr~av~~-------~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~-I~------~G~------~i~i~~a~ 166 (402)
|+.+||.. ...+++|+-+.|+-+ +.|.| .+|+||.|.|...+ |. +|. .+.+ .++
T Consensus 264 TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SaT~~v-~~~ 340 (566)
T PLN02713 264 TINDAVAAAPNNTDGSNGYFVIYVTAGVYE--EYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAV-VGQ 340 (566)
T ss_pred CHHHHHHhhhcccCCCCceEEEEEcCcEEE--EEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccceeEEE-ECC
Confidence 67777743 122566666667643 55555 67899999986543 32 231 2333 679
Q ss_pred cEEEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeE
Q 015702 167 NIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLID 228 (402)
Q Consensus 167 NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliD 228 (402)
+++.+||.|++-.+. ..+-|+-+. .++..-+.+|.|....|=|.+
T Consensus 341 ~F~a~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~ 386 (566)
T PLN02713 341 NFVAVNITFRNTAGP-----------------AKHQAVALRSGADLSTFYSCSFEAYQDTLYT 386 (566)
T ss_pred CeEEEeeEEEeCCCC-----------------CCCceEEEEecCCcEEEEeeeeccCCcceEE
Confidence 999999999975321 234556655 567777999999887776654
No 66
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=89.93 E-value=2.7 Score=42.16 Aligned_cols=123 Identities=15% Similarity=0.263 Sum_probs=68.7
Q ss_pred hHHHhhhc----CCCEEEEEeeeeEEeeCceEEe---ecCeeEeecCCceEEeCC-------------ceEEEEeeecEE
Q 015702 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHIAGG-------------PCITVQYVTNII 169 (402)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~snkTI~G~ga~~~I~~G-------------~~i~i~~a~NVI 169 (402)
|+.+||.. ...+++||-..|+-+ +.|.| .+++||.|.|...+|.-+ +.+.+ .+++++
T Consensus 14 TIq~Aida~p~~~~~~~~I~I~~G~Y~--E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v-~a~~f~ 90 (298)
T PF01095_consen 14 TIQAAIDAAPDNNTSRYTIFIKPGTYR--EKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSV-NADDFT 90 (298)
T ss_dssp SHHHHHHHS-SSSSS-EEEEE-SEEEE----EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-E
T ss_pred CHHHHHHhchhcCCceEEEEEeCeeEc--cccEeccccceEEEEecCCCceEEEEeccccccccccccccccc-ccccee
Confidence 57777753 334566776677544 56666 379999999876543211 11223 589999
Q ss_pred EEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEeCCceEEEEeeEecCCCCCeeEeeeCCceEEEEcceecccCee
Q 015702 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKV 249 (402)
Q Consensus 170 Irnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~gs~nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~f~~H~k~ 249 (402)
++||.|++.... .....-||.+. ++++.+.+|.|....|-|.. .....-+.+|++..+-.
T Consensus 91 ~~nit~~Nt~g~---------------~~~qAvAl~~~-~d~~~f~~c~~~g~QDTL~~---~~~r~y~~~c~IeG~vD- 150 (298)
T PF01095_consen 91 AENITFENTAGP---------------SGGQAVALRVS-GDRAAFYNCRFLGYQDTLYA---NGGRQYFKNCYIEGNVD- 150 (298)
T ss_dssp EEEEEEEEHCSG---------------SG----SEEET--TSEEEEEEEEE-STT-EEE----SSEEEEES-EEEESEE-
T ss_pred eeeeEEecCCCC---------------cccceeeeeec-CCcEEEEEeEEccccceeee---ccceeEEEeeEEEecCc-
Confidence 999999985311 01233566654 57788999999999998875 23456667888765321
Q ss_pred eecCCC
Q 015702 250 MLLGHS 255 (402)
Q Consensus 250 ~LiG~s 255 (402)
.++|..
T Consensus 151 FIfG~~ 156 (298)
T PF01095_consen 151 FIFGNG 156 (298)
T ss_dssp EEEESS
T ss_pred EEECCe
Confidence 345543
No 67
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=88.34 E-value=12 Score=39.62 Aligned_cols=52 Identities=10% Similarity=0.200 Sum_probs=36.6
Q ss_pred eeecEEEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEe-CCceEEEEeeEecCCCCCeeE
Q 015702 164 YVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLID 228 (402)
Q Consensus 164 ~a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~-gs~nVWIDHcs~s~~~DgliD 228 (402)
.+++++.+||.|++-.+... ....+-|+-+. .++.+-+.+|.|--..|=|.+
T Consensus 204 ~ad~F~a~NLTf~Ntag~~~-------------~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~ 256 (422)
T PRK10531 204 QNNGLQLQNLTIENTLGDSV-------------DAGNHPAVALRTDGDKVQIENVNILGRQDTFFV 256 (422)
T ss_pred ECCCEEEEeeEEEeCCCCCC-------------CCCcceeEEEEEcCCcEEEEeeEEecccceeee
Confidence 67999999999998643110 01234455555 467888999999988888775
No 68
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=88.29 E-value=5.6 Score=40.39 Aligned_cols=115 Identities=16% Similarity=0.203 Sum_probs=73.6
Q ss_pred CCCcEEEeCCceEEEEeeEecCCC-----CCeeEeeeCCceEEEEcceecccCeeeecCCCCccc--CCCcceEEEEcee
Q 015702 200 DGDGVSIFGGSHVWVDHCSLSNCN-----DGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFT--QDKNMQVTIAFNH 272 (402)
Q Consensus 200 ~gDaI~i~gs~nVWIDHcs~s~~~-----DgliDv~~~s~~VTISnn~f~~H~k~~LiG~sd~~~--~d~~~~vTihhN~ 272 (402)
-+-++.|+.+.||+|-..+|.... +-.|.+..++.+|-|-+|-|..|....=--+.|... ......|||-+|+
T Consensus 115 ~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~ 194 (345)
T COG3866 115 VGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNK 194 (345)
T ss_pred EeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeee
Confidence 356788899999999999999876 345666678999999999999865431111112111 1123579999999
Q ss_pred ecCCCcC--------CCccccCce--EEEEcCeeeCCcc----eeeccCCCceEEEEccEEec
Q 015702 273 FGEGLVQ--------RMPRCRHGY--FHVVNNDYTHWEM----YALGGSASPTINSQGNRFVA 321 (402)
Q Consensus 273 f~~~~~~--------R~Pr~R~G~--~Hv~NN~y~~~~~----yaigg~~~~~i~~egN~F~~ 321 (402)
|.++-.+ -++. -|+ +-+-+|||+|-.. +=+| ++.+-+|||+.
T Consensus 195 fhdh~Kssl~G~sD~~~~~--~~~~kvT~hhNyFkn~~qR~PriRfG-----~vHvyNNYy~~ 250 (345)
T COG3866 195 FHDHDKSSLLGSSDSSNYD--DGKYKVTIHHNYFKNLYQRGPRIRFG-----MVHVYNNYYEG 250 (345)
T ss_pred eecCCeeeeeccCCccccc--CCceeEEEeccccccccccCCceEee-----EEEEecccccc
Confidence 9654221 1121 233 4456899887422 1122 46778999983
No 69
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=87.60 E-value=8.2 Score=36.57 Aligned_cols=88 Identities=23% Similarity=0.277 Sum_probs=57.6
Q ss_pred ceEEEEcceecccC--eeeecCCCCcccCCCcceEEEEceeecCCCcCCCccccC--c-----e--EEEEcCeeeCCc--
Q 015702 234 TAITISNNYMTHHN--KVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRH--G-----Y--FHVVNNDYTHWE-- 300 (402)
Q Consensus 234 ~~VTISnn~f~~H~--k~~LiG~sd~~~~d~~~~vTihhN~f~~~~~~R~Pr~R~--G-----~--~Hv~NN~y~~~~-- 300 (402)
++|-|=+|.+.+-. -.-|+|...+++.+....|-+|||.|.. ...+|.... | + .-+.||+|+.-.
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~--tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~a 79 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYD--TGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHA 79 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeec--CCcCCCCceeeeEEeccccccEEEeeeecccccc
Confidence 46778888888754 3447888666766666689999999953 556665553 3 2 358899998643
Q ss_pred ----ceeec----cCCCceEEEEccEEecCC
Q 015702 301 ----MYALG----GSASPTINSQGNRFVAPN 323 (402)
Q Consensus 301 ----~yaig----g~~~~~i~~egN~F~~~~ 323 (402)
||..+ .+.+-+..+.+|.+.+..
T Consensus 80 ai~~~y~~~~~sp~gsgyttivRNNII~NT~ 110 (198)
T PF08480_consen 80 AIAQMYPDYDLSPKGSGYTTIVRNNIIVNTR 110 (198)
T ss_pred eEEEEecccccCCCCCceEEEEEcceEeeee
Confidence 33333 123445667788886654
No 70
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes.; GO: 0030570 pectate lyase activity
Probab=85.70 E-value=0.62 Score=35.69 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=15.7
Q ss_pred CCCCChHHHHHHHHhhhh
Q 015702 22 SPVQDPELVVEEVHKSIN 39 (402)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~ 39 (402)
.-.|||++|+++||+.|+
T Consensus 23 aY~pdP~~Vt~~FN~~V~ 40 (56)
T PF04431_consen 23 AYVPDPENVTNEFNRHVH 40 (56)
T ss_pred hcCCCHHHHHHHHHHHHH
Confidence 347999999999999886
No 71
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=80.64 E-value=24 Score=32.09 Aligned_cols=30 Identities=13% Similarity=0.181 Sum_probs=22.5
Q ss_pred CCcEEEeCCceEEEEeeEecCCCCCeeEee
Q 015702 201 GDGVSIFGGSHVWVDHCSLSNCNDGLIDAI 230 (402)
Q Consensus 201 gDaI~i~gs~nVWIDHcs~s~~~DgliDv~ 230 (402)
.++|.+..+++++|++|++..+..-.+.+.
T Consensus 112 ~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~ 141 (225)
T PF12708_consen 112 NNGIRFNSSQNVSISNVRIENSGGDGIYFN 141 (225)
T ss_dssp EEEEEETTEEEEEEEEEEEES-SS-SEEEE
T ss_pred ceEEEEEeCCeEEEEeEEEEccCccEEEEE
Confidence 578888889999999999998755555543
No 72
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=66.59 E-value=9.6 Score=26.68 Aligned_cols=41 Identities=24% Similarity=0.273 Sum_probs=27.8
Q ss_pred cEEEeCCceEEEEeeEecCCCCCeeEeeeCCceEEEEcceecc
Q 015702 203 GVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTH 245 (402)
Q Consensus 203 aI~i~gs~nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~f~~ 245 (402)
||.++.+++..|..+.++...||.. + ..+.+-+|..|.|.+
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~-~-~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIY-L-TDSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEE-E-EeCCCCEeECCEEEc
Confidence 5677777777788888888888543 2 345666777776654
No 73
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=63.11 E-value=1.4e+02 Score=28.57 Aligned_cols=71 Identities=14% Similarity=0.125 Sum_probs=43.0
Q ss_pred CceEEEEeeEecCC-CCCeeEee-----eCCceEEEEcceecccCeeeec--CCCCcccC-CCcceEEEEceeecCCCcC
Q 015702 209 GSHVWVDHCSLSNC-NDGLIDAI-----HGSTAITISNNYMTHHNKVMLL--GHSDTFTQ-DKNMQVTIAFNHFGEGLVQ 279 (402)
Q Consensus 209 s~nVWIDHcs~s~~-~DgliDv~-----~~s~~VTISnn~f~~H~k~~Li--G~sd~~~~-d~~~~vTihhN~f~~~~~~ 279 (402)
+++|+|.|+.|..+ ....++.. .+-.+..|-||.|+.-..+.+. -....... ..+...++..|.+ .++.+
T Consensus 33 a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII-~NT~~ 111 (198)
T PF08480_consen 33 AKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNII-VNTRK 111 (198)
T ss_pred cccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceE-eeeee
Confidence 57999999999985 33334422 3445678999999853322222 11111222 2356677788888 46776
Q ss_pred C
Q 015702 280 R 280 (402)
Q Consensus 280 R 280 (402)
|
T Consensus 112 r 112 (198)
T PF08480_consen 112 R 112 (198)
T ss_pred c
Confidence 6
No 74
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=61.89 E-value=34 Score=33.64 Aligned_cols=90 Identities=18% Similarity=0.160 Sum_probs=51.1
Q ss_pred ecCeeEeecCCceE-EeCCceEEEEeeecEEEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEeCC------ceE
Q 015702 140 NSFKTIDGRGASVH-IAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGG------SHV 212 (402)
Q Consensus 140 ~snkTI~G~ga~~~-I~~G~~i~i~~a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~gs------~nV 212 (402)
.++.+|.|.+-... +..|.+|.+..+ +..|+|.+|+++. .+||.+.+. .++
T Consensus 96 ~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~~~---------------------~~GI~v~g~~~~~~i~~~ 153 (246)
T PF07602_consen 96 ANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTNNG---------------------REGIFVTGTSANPGINGN 153 (246)
T ss_pred cCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEECCc---------------------cccEEEEeeecCCcccce
Confidence 55666666522111 123567888655 8999999998642 344544432 344
Q ss_pred EEEeeEecCCCCCeeEee-eCCceEEEEcceecccCeeee
Q 015702 213 WVDHCSLSNCNDGLIDAI-HGSTAITISNNYMTHHNKVML 251 (402)
Q Consensus 213 WIDHcs~s~~~DgliDv~-~~s~~VTISnn~f~~H~k~~L 251 (402)
.|.-+++....-|..-.. ...-...|.||+|++-..++.
T Consensus 154 vI~GN~~~~~~~Gi~i~~~~~~~~n~I~NN~I~~N~~Gi~ 193 (246)
T PF07602_consen 154 VISGNSIYFNKTGISISDNAAPVENKIENNIIENNNIGIV 193 (246)
T ss_pred EeecceEEecCcCeEEEcccCCccceeeccEEEeCCcCeE
Confidence 566666666655543211 111224789999998655543
No 75
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=58.82 E-value=59 Score=31.44 Aligned_cols=53 Identities=21% Similarity=0.242 Sum_probs=34.8
Q ss_pred ccccCCCcEEEeCCc-eEEEEeeEecCCCCCeeEeeeCCceEEEEcceecccCee
Q 015702 196 RTISDGDGVSIFGGS-HVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKV 249 (402)
Q Consensus 196 ~~~~~gDaI~i~gs~-nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~f~~H~k~ 249 (402)
+..-..||+++.+.. .+.|.-..+..+.|-.|-. .+...++|++-+..++.|.
T Consensus 91 wedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~-Ng~Gtv~I~nF~a~d~GKl 144 (215)
T PF03211_consen 91 WEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQH-NGGGTVTIKNFYAEDFGKL 144 (215)
T ss_dssp ESS-SSESEEEESSEEEEEEESTEEEEEEEEEEEE--SSEEEEEEEEEEEEEEEE
T ss_pred ecccceeeeEEcCCCceEEEeCCcccCCCccEEEe-cCceeEEEEeEEEcCCCEE
Confidence 334567888888766 7888888888888877763 3555677777555555443
No 76
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=56.71 E-value=2.4e+02 Score=29.56 Aligned_cols=120 Identities=18% Similarity=0.289 Sum_probs=63.0
Q ss_pred CceEEEEeeecEEEEeeEEee---cccCCCcccccCCCCC--CCc---cccCCCcEEEeCCceEEEEeeEecCCCCCeeE
Q 015702 157 GPCITVQYVTNIIIHGINIHD---CKRGGNANVRDSPSHY--GWR---TISDGDGVSIFGGSHVWVDHCSLSNCNDGLID 228 (402)
Q Consensus 157 G~~i~i~~a~NVIIrnl~i~~---~~~g~~~~i~~s~~~~--g~~---~~~~gDaI~i~gs~nVWIDHcs~s~~~DgliD 228 (402)
|--+++ .+-++||++|++|+ ..|.-++-|-..++.- .-| -....=||.++++.++||.-+++.--.|.-+.
T Consensus 69 G~~vtv-~aP~~~v~Gl~vr~sg~~lp~m~agI~v~~~at~A~Vr~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~~r~~ 147 (408)
T COG3420 69 GSYVTV-AAPDVIVEGLTVRGSGRSLPAMDAGIFVGRTATGAVVRHNDLIGNSFGIYLHGSADVRIEGNTIQGLADLRVA 147 (408)
T ss_pred ccEEEE-eCCCceeeeEEEecCCCCcccccceEEeccCcccceEEcccccccceEEEEeccCceEEEeeEEeeccccchh
Confidence 334555 58899999999983 3332111110001000 000 01234567777888888888887754443321
Q ss_pred eeeCCceEEEEcceecccCeeeecCCCCcccCCCcceEEEEceeecCCCcCCCccccCc
Q 015702 229 AIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHG 287 (402)
Q Consensus 229 v~~~s~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTihhN~f~~~~~~R~Pr~R~G 287 (402)
...+.|+|=| ...+...|..-++..|...--|=+||-| + ..|+--+|||
T Consensus 148 --~rGnGI~vyN-----a~~a~V~~ndisy~rDgIy~~~S~~~~~-~--gnr~~~~Ryg 196 (408)
T COG3420 148 --ERGNGIYVYN-----APGALVVGNDISYGRDGIYSDTSQHNVF-K--GNRFRDLRYG 196 (408)
T ss_pred --hccCceEEEc-----CCCcEEEcCccccccceEEEccccccee-c--ccchhheeee
Confidence 2233444422 2344455555556666655566677777 3 3355566766
No 77
>PF07822 Toxin_13: Neurotoxin B-IV-like protein; InterPro: IPR012497 The members of this family resemble neurotoxin B-IV (P01525 from SWISSPROT), which is a crustacean-selective neurotoxin produced by the marine worm Cerebratulus lacteus. This highly cationic peptide is approximately 55 residues and is arranged to form two antiparallel helices connected by a well-defined loop in a hairpin structure. The branches of the hairpin are linked by four disulphide bonds. Three residues identified as being important for activity, namely Arg-17, -25 and -34, are found on the same face of the molecule, while another residue important for activity, Trp30, is on the opposite side. The protein's mode of action is not entirely understood, but it may act on voltage-gated sodium channels, possibly by binding to an as yet uncharacterised site on these proteins. Its site of interaction may also be less specific, for example it may interact with negatively charged membrane lipids []. ; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1VIB_A.
Probab=53.32 E-value=2 Score=31.86 Aligned_cols=20 Identities=45% Similarity=0.951 Sum_probs=13.9
Q ss_pred cccccccCcccccccccccc
Q 015702 56 IDDCWRCDPKWEENRQQLAD 75 (402)
Q Consensus 56 id~cwr~~~~w~~~r~~la~ 75 (402)
-|+|.||+..|+..|-.-|.
T Consensus 20 yd~ci~cqgkwagkrgkcaa 39 (55)
T PF07822_consen 20 YDDCIRCQGKWAGKRGKCAA 39 (55)
T ss_dssp HHHH--TTGGGTT-HHHHHH
T ss_pred hhHHheecceeccccCcchh
Confidence 69999999999988866544
No 78
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=48.76 E-value=32 Score=35.01 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=32.3
Q ss_pred EeeecEEEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEeCCceEEEEeeEecCCCCCee
Q 015702 163 QYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLI 227 (402)
Q Consensus 163 ~~a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~gs~nVWIDHcs~s~~~Dgli 227 (402)
.+.+..||||++-+++.|.- .....-|.-.+.|+|++|..||...+-++.--||
T Consensus 265 engkhfvirnvkaknitpdf-----------skkagidnatvaiygcdnfvidni~mvnsagmli 318 (464)
T PRK10123 265 ENGKHFVIRNIKAKNITPDF-----------SKKAGIDNATVAIYGCDNFVIDNIEMINSAGMLI 318 (464)
T ss_pred cCCcEEEEEeeeccccCCCc-----------hhhcCCCcceEEEEcccceEEeccccccccccEE
Confidence 35566777777776665531 1111124445777888888888877766554443
No 79
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=42.42 E-value=52 Score=22.84 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=30.8
Q ss_pred EEEEeeecEEEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEeCCceEEEEeeEecCC
Q 015702 160 ITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNC 222 (402)
Q Consensus 160 i~i~~a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~gs~nVWIDHcs~s~~ 222 (402)
|.+..+++..|++-+|.+ ..|||.+..+++--|..+.++..
T Consensus 2 I~l~~s~~~~i~~N~i~~----------------------~~~GI~~~~s~~n~i~~N~~~~n 42 (44)
T TIGR03804 2 IYLESSSNNTLENNTASN----------------------NSYGIYLTDSSNNTLSNNTASSN 42 (44)
T ss_pred EEEEecCCCEEECcEEeC----------------------CCCEEEEEeCCCCEeECCEEEcC
Confidence 566677777788888763 35699999988888888887653
No 80
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=34.16 E-value=5.2e+02 Score=27.26 Aligned_cols=97 Identities=18% Similarity=0.236 Sum_probs=53.5
Q ss_pred EEEEeeecEEEEeeEEeecccCCCcccccCCCCCCCcc---ccCCCcEEEeCCceEEEEeeEecCCCCCeeEeeeCCceE
Q 015702 160 ITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRT---ISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAI 236 (402)
Q Consensus 160 i~i~~a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~---~~~gDaI~i~gs~nVWIDHcs~s~~~DgliDv~~~s~~V 236 (402)
+-+....+++||+-.|.++... . ++... ....|+ ..-.-||.-.+...+=|-||.|..|.=|.+. ....
T Consensus 139 ~~f~~~t~~~~hgC~F~gf~g~--c-l~~~~-~~~VrGC~F~~C~~gi~~~~~~~lsVk~C~FekC~igi~s----~G~~ 210 (386)
T PF01696_consen 139 VVFHANTNTLFHGCSFFGFHGT--C-LESWA-GGEVRGCTFYGCWKGIVSRGKSKLSVKKCVFEKCVIGIVS----EGPA 210 (386)
T ss_pred eEEEecceEEEEeeEEecCcce--e-EEEcC-CcEEeeeEEEEEEEEeecCCcceEEeeheeeeheEEEEEe----cCCe
Confidence 3345678888888888764311 0 00000 000000 0011233333455666788888877655532 4577
Q ss_pred EEEcceecccCeeeecCCCCcccCCCcceEEEEceeec
Q 015702 237 TISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFG 274 (402)
Q Consensus 237 TISnn~f~~H~k~~LiG~sd~~~~d~~~~vTihhN~f~ 274 (402)
+|++|-|.+-.-..|++. .-++.||.|-
T Consensus 211 ~i~hn~~~ec~Cf~l~~g----------~g~i~~N~v~ 238 (386)
T PF01696_consen 211 RIRHNCASECGCFVLMKG----------TGSIKHNMVC 238 (386)
T ss_pred EEecceecccceEEEEcc----------cEEEeccEEe
Confidence 888888888665555554 4578888884
No 81
>PF10880 DUF2673: Protein of unknown function (DUF2673); InterPro: IPR024247 This family of proteins with unknown function appears to be restricted to Rickettsiae spp.
Probab=30.52 E-value=32 Score=26.57 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=18.3
Q ss_pred HHHHHhhcccccCCCCCChHHHHHHH
Q 015702 9 LLLCLLAPTFISSSPVQDPELVVEEV 34 (402)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (402)
++|.+..+.|+.+-+.|||..|+-.-
T Consensus 9 lilafa~pvfassmq~p~pasvtttq 34 (65)
T PF10880_consen 9 LILAFASPVFASSMQMPDPASVTTTQ 34 (65)
T ss_pred HHHHHhhhHhhhcccCCCCcceeHHH
Confidence 34455667777777899999986543
No 82
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=30.44 E-value=77 Score=31.75 Aligned_cols=13 Identities=0% Similarity=0.015 Sum_probs=7.6
Q ss_pred eeecEEEEeeEEe
Q 015702 164 YVTNIIIHGINIH 176 (402)
Q Consensus 164 ~a~NVIIrnl~i~ 176 (402)
+++|..|.|.+|.
T Consensus 17 ~~~d~~l~~~~f~ 29 (277)
T PF12541_consen 17 GSHDLRLENCTFA 29 (277)
T ss_pred ccCCCEEEeeEEe
Confidence 4556666666665
No 83
>PF06355 Aegerolysin: Aegerolysin; InterPro: IPR009413 This family consists of several bacterial and eukaryotic Aegerolysin-like proteins. Aegerolysin and ostreolysin are expressed during formation of primordia and fruiting bodies, and these haemolysins may play an important role in initial phase of fungal fruiting. The bacterial members of this family are expressed during sporulation []. Ostreolysin was found cytolytic to various erythrocytes and tumour cells []. It forms transmembrane pores 4 nm in diameter. Its activity is inhibited by total membrane lipids, and modulated by lysophosphatides.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0030582 fruiting body development
Probab=29.21 E-value=3.1e+02 Score=24.35 Aligned_cols=71 Identities=21% Similarity=0.274 Sum_probs=45.3
Q ss_pred eecEEEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEEeCCceEEEEeeEecC---CCCCeeEeeeCCceE-EEEc
Q 015702 165 VTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSN---CNDGLIDAIHGSTAI-TISN 240 (402)
Q Consensus 165 a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i~gs~nVWIDHcs~s~---~~DgliDv~~~s~~V-TISn 240 (402)
..++-|+|.++.-.+.-..+. ++. .. ...+-|.+.|......+|-=|.-++ +..|.||+..+.+.| ||.|
T Consensus 14 ~~~l~i~Na~L~~GKfy~~~~-kd~--ei---s~~~v~~~~i~~~~~~~i~scGr~~~~sGTEGsfdl~dg~~kI~~lyW 87 (131)
T PF06355_consen 14 SGDLKIKNAQLSWGKFYRDGN-KDD--EI---SPDDVNGIVIPPGGSYSICSCGREGSPSGTEGSFDLYDGDTKICTLYW 87 (131)
T ss_pred CccEEEEccEeccCccccCCC-cCC--Ee---CccccCceEecCCCeEEEEEecCCCCCcCceEEEEEEeCCEEEEEEEE
Confidence 347888888887655421110 000 00 1245678888877778888887755 588999988776666 6655
Q ss_pred c
Q 015702 241 N 241 (402)
Q Consensus 241 n 241 (402)
.
T Consensus 88 d 88 (131)
T PF06355_consen 88 D 88 (131)
T ss_pred e
Confidence 3
No 84
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=20.22 E-value=9e+02 Score=24.39 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=21.5
Q ss_pred eEEEEceeecCCCcCCCccccCceEEEEcCeeeC
Q 015702 265 QVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTH 298 (402)
Q Consensus 265 ~vTihhN~f~~~~~~R~Pr~R~G~~Hv~NN~y~~ 298 (402)
++|+.++.. .+ -.|.|---.+.+.|.-+.+
T Consensus 195 NltliNC~I-~g---~QpLCY~~~L~l~nC~~~~ 224 (277)
T PF12541_consen 195 NLTLINCTI-EG---TQPLCYCDNLVLENCTMID 224 (277)
T ss_pred CeEEEEeEE-ec---cCccEeecceEEeCcEeec
Confidence 789999988 33 4687755566777887764
Done!