Query 015704
Match_columns 402
No_of_seqs 543 out of 3193
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 08:47:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015704.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015704hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 5.9E-87 1.3E-91 649.3 26.4 387 7-397 114-506 (506)
2 PF03141 Methyltransf_29: Puta 100.0 1.4E-29 3E-34 247.8 8.4 195 185-399 34-262 (506)
3 PLN02336 phosphoethanolamine N 99.9 6.9E-25 1.5E-29 224.0 14.5 310 10-358 37-369 (475)
4 PRK10258 biotin biosynthesis p 99.7 2.3E-17 5E-22 154.6 10.1 165 10-200 42-209 (251)
5 PRK01544 bifunctional N5-gluta 99.7 9.8E-15 2.1E-19 149.3 21.3 101 10-112 138-269 (506)
6 COG2226 UbiE Methylase involve 99.7 7.8E-16 1.7E-20 141.0 11.4 102 10-113 51-157 (238)
7 PF01209 Ubie_methyltran: ubiE 99.6 8.7E-16 1.9E-20 141.7 10.6 104 9-113 46-154 (233)
8 PF08241 Methyltransf_11: Meth 99.6 3.8E-16 8.2E-21 123.0 5.0 89 259-356 1-95 (95)
9 KOG2940 Predicted methyltransf 99.6 4.8E-16 1E-20 137.5 2.8 180 8-201 70-253 (325)
10 PF08241 Methyltransf_11: Meth 99.6 3E-15 6.5E-20 117.8 6.0 90 15-110 1-95 (95)
11 COG2226 UbiE Methylase involve 99.5 5.1E-15 1.1E-19 135.6 6.0 95 257-358 54-156 (238)
12 COG2227 UbiG 2-polyprenyl-3-me 99.5 1.6E-14 3.4E-19 130.2 6.3 103 9-113 58-162 (243)
13 PLN02233 ubiquinone biosynthes 99.5 1.2E-13 2.6E-18 130.1 11.6 104 10-114 73-184 (261)
14 PLN02396 hexaprenyldihydroxybe 99.5 1.6E-13 3.6E-18 132.1 10.6 102 10-113 131-236 (322)
15 PLN02244 tocopherol O-methyltr 99.5 2.4E-13 5.3E-18 132.8 11.1 103 9-113 117-224 (340)
16 PRK11036 putative S-adenosyl-L 99.5 7.4E-14 1.6E-18 131.2 6.7 95 256-358 46-149 (255)
17 PF01209 Ubie_methyltran: ubiE 99.5 5.4E-14 1.2E-18 129.8 4.9 96 257-358 50-153 (233)
18 PRK15068 tRNA mo(5)U34 methylt 99.4 4.3E-13 9.3E-18 129.9 11.0 103 9-113 121-227 (322)
19 PTZ00098 phosphoethanolamine N 99.4 6.1E-14 1.3E-18 132.2 5.0 125 228-359 8-157 (263)
20 PLN02396 hexaprenyldihydroxybe 99.4 7.3E-14 1.6E-18 134.6 5.3 96 257-360 134-237 (322)
21 COG2227 UbiG 2-polyprenyl-3-me 99.4 1.3E-13 2.9E-18 124.3 5.5 94 258-360 63-163 (243)
22 PRK15451 tRNA cmo(5)U34 methyl 99.4 4.6E-13 9.9E-18 125.2 8.1 102 8-112 54-164 (247)
23 PRK01683 trans-aconitate 2-met 99.4 7.6E-13 1.6E-17 124.5 9.6 97 9-112 30-130 (258)
24 PF13489 Methyltransf_23: Meth 99.4 1.2E-13 2.6E-18 119.8 3.7 94 254-360 22-117 (161)
25 PLN02233 ubiquinone biosynthes 99.4 5.9E-13 1.3E-17 125.4 8.6 96 256-358 75-182 (261)
26 KOG1540 Ubiquinone biosynthesi 99.4 1.5E-12 3.3E-17 117.5 10.6 104 10-115 100-217 (296)
27 PF12847 Methyltransf_18: Meth 99.4 1.1E-12 2.4E-17 106.9 8.7 102 10-112 1-111 (112)
28 TIGR02072 BioC biotin biosynth 99.4 5.6E-13 1.2E-17 123.4 7.4 162 10-199 34-200 (240)
29 PF13847 Methyltransf_31: Meth 99.4 1.9E-12 4E-17 111.9 10.1 102 9-113 2-111 (152)
30 PRK10258 biotin biosynthesis p 99.4 1.6E-12 3.4E-17 121.9 10.4 96 254-358 42-140 (251)
31 PF13489 Methyltransf_23: Meth 99.4 1.1E-12 2.4E-17 113.7 8.7 95 9-114 21-117 (161)
32 TIGR02752 MenG_heptapren 2-hep 99.4 4.4E-12 9.5E-17 117.3 12.9 102 10-113 45-152 (231)
33 PTZ00098 phosphoethanolamine N 99.4 1.2E-12 2.5E-17 123.5 9.0 103 9-113 51-157 (263)
34 PRK05785 hypothetical protein; 99.4 1.5E-12 3.2E-17 120.0 9.3 88 10-106 51-141 (226)
35 PRK14103 trans-aconitate 2-met 99.4 1.3E-12 2.8E-17 122.8 8.8 95 256-358 31-126 (255)
36 PRK11036 putative S-adenosyl-L 99.4 1.2E-12 2.6E-17 123.0 8.5 105 6-112 40-149 (255)
37 PRK11207 tellurite resistance 99.4 2.3E-12 5E-17 116.3 10.0 100 10-111 30-133 (197)
38 TIGR00477 tehB tellurite resis 99.4 2.1E-12 4.6E-17 116.3 9.7 100 10-111 30-132 (195)
39 PRK14103 trans-aconitate 2-met 99.4 2.2E-12 4.7E-17 121.3 8.9 96 9-113 28-127 (255)
40 PLN02244 tocopherol O-methyltr 99.3 2.4E-12 5.1E-17 125.9 9.2 96 254-358 118-223 (340)
41 PF03848 TehB: Tellurite resis 99.3 8E-12 1.7E-16 111.0 10.2 101 10-112 30-133 (192)
42 TIGR00740 methyltransferase, p 99.3 7.1E-12 1.5E-16 116.6 10.2 102 9-113 52-162 (239)
43 PF08242 Methyltransf_12: Meth 99.3 5.2E-13 1.1E-17 106.6 2.2 93 15-108 1-99 (99)
44 TIGR00452 methyltransferase, p 99.3 6.2E-12 1.3E-16 120.7 9.8 101 9-113 120-226 (314)
45 PLN02336 phosphoethanolamine N 99.3 8.3E-12 1.8E-16 127.7 10.8 103 9-113 265-370 (475)
46 PRK11207 tellurite resistance 99.3 1.9E-12 4.2E-17 116.8 5.3 95 256-357 32-133 (197)
47 PF13649 Methyltransf_25: Meth 99.3 1.6E-12 3.5E-17 104.2 4.3 92 14-106 1-101 (101)
48 KOG4300 Predicted methyltransf 99.3 1.4E-11 3.1E-16 107.9 10.4 101 12-113 78-183 (252)
49 PF02353 CMAS: Mycolic acid cy 99.3 1.9E-12 4.2E-17 122.2 5.4 109 241-357 51-165 (273)
50 PRK00107 gidB 16S rRNA methylt 99.3 5.3E-11 1.1E-15 106.2 14.1 114 256-380 47-167 (187)
51 PRK11873 arsM arsenite S-adeno 99.3 2.2E-11 4.7E-16 115.5 12.3 103 9-113 76-184 (272)
52 PRK11088 rrmA 23S rRNA methylt 99.3 1E-11 2.2E-16 117.8 9.4 102 9-124 84-192 (272)
53 TIGR00477 tehB tellurite resis 99.3 3.2E-12 7E-17 115.2 5.6 119 256-383 32-170 (195)
54 PLN02490 MPBQ/MSBQ methyltrans 99.3 2.6E-11 5.6E-16 117.4 12.2 100 9-112 112-215 (340)
55 PF08242 Methyltransf_12: Meth 99.3 1.5E-12 3.1E-17 104.0 2.9 90 259-354 1-99 (99)
56 PRK12335 tellurite resistance 99.3 7E-12 1.5E-16 119.8 8.0 116 257-382 123-259 (287)
57 PF12847 Methyltransf_18: Meth 99.3 2.8E-12 6.1E-17 104.5 4.4 97 257-358 4-111 (112)
58 PRK05785 hypothetical protein; 99.3 1.2E-11 2.7E-16 113.9 8.9 86 256-352 53-141 (226)
59 TIGR00452 methyltransferase, p 99.3 1.9E-11 4.1E-16 117.4 10.0 95 256-358 123-225 (314)
60 PRK15068 tRNA mo(5)U34 methylt 99.3 1.4E-11 3.1E-16 119.3 8.9 95 256-358 124-226 (322)
61 PRK12335 tellurite resistance 99.3 2.1E-11 4.5E-16 116.6 9.7 100 10-111 120-222 (287)
62 PRK00121 trmB tRNA (guanine-N( 99.3 3.2E-11 6.9E-16 109.3 10.3 104 7-112 37-156 (202)
63 KOG1270 Methyltransferases [Co 99.2 1E-11 2.2E-16 113.0 6.5 94 256-360 91-197 (282)
64 PF05175 MTS: Methyltransferas 99.2 3.9E-11 8.4E-16 105.7 10.0 102 10-113 31-141 (170)
65 PF03848 TehB: Tellurite resis 99.2 5.2E-12 1.1E-16 112.2 3.9 122 256-382 32-169 (192)
66 PRK06922 hypothetical protein; 99.2 2.8E-11 6E-16 124.3 9.4 102 10-112 418-537 (677)
67 PRK01683 trans-aconitate 2-met 99.2 6.6E-11 1.4E-15 111.3 10.6 117 255-378 32-154 (258)
68 PRK00107 gidB 16S rRNA methylt 99.2 1.1E-10 2.3E-15 104.2 11.4 97 10-113 45-146 (187)
69 TIGR02752 MenG_heptapren 2-hep 99.2 7.2E-11 1.6E-15 109.1 10.6 98 256-359 47-152 (231)
70 PF07021 MetW: Methionine bios 99.2 1.1E-11 2.4E-16 108.8 4.5 93 257-359 16-110 (193)
71 PF13847 Methyltransf_31: Meth 99.2 2.1E-11 4.6E-16 105.3 6.0 99 256-360 5-112 (152)
72 KOG1270 Methyltransferases [Co 99.2 1.8E-11 3.9E-16 111.3 5.6 99 11-113 90-196 (282)
73 smart00828 PKS_MT Methyltransf 99.2 1.8E-11 4E-16 112.6 5.4 118 257-381 2-143 (224)
74 KOG1540 Ubiquinone biosynthesi 99.2 4.6E-11 1E-15 108.0 7.7 117 256-376 102-233 (296)
75 PRK08317 hypothetical protein; 99.2 9.9E-11 2.1E-15 108.2 10.2 101 10-112 19-124 (241)
76 PRK09489 rsmC 16S ribosomal RN 99.2 9.7E-11 2.1E-15 114.2 10.1 100 11-113 197-304 (342)
77 PRK15001 SAM-dependent 23S rib 99.2 4.5E-09 9.8E-14 103.3 21.7 130 256-398 230-374 (378)
78 PF05401 NodS: Nodulation prot 99.2 2.4E-11 5.2E-16 106.9 4.9 138 249-395 38-192 (201)
79 smart00828 PKS_MT Methyltransf 99.2 1E-10 2.3E-15 107.5 9.0 99 12-113 1-105 (224)
80 TIGR00740 methyltransferase, p 99.2 3.4E-11 7.3E-16 112.1 5.8 99 256-359 55-162 (239)
81 TIGR00091 tRNA (guanine-N(7)-) 99.2 1.2E-10 2.6E-15 104.8 9.1 105 7-113 13-133 (194)
82 PRK15451 tRNA cmo(5)U34 methyl 99.2 2.9E-11 6.3E-16 113.0 5.2 98 256-359 58-165 (247)
83 COG4106 Tam Trans-aconitate me 99.2 5.4E-11 1.2E-15 105.1 6.3 97 10-113 30-130 (257)
84 PRK11705 cyclopropane fatty ac 99.1 8.7E-11 1.9E-15 116.4 8.4 93 257-358 170-267 (383)
85 TIGR03840 TMPT_Se_Te thiopurin 99.1 1.4E-10 3.1E-15 105.7 8.8 103 10-112 34-152 (213)
86 TIGR02072 BioC biotin biosynth 99.1 5.7E-11 1.2E-15 109.9 6.2 97 256-359 36-136 (240)
87 TIGR03587 Pse_Me-ase pseudamin 99.1 1.9E-10 4.1E-15 104.3 9.2 95 10-112 43-142 (204)
88 PF08003 Methyltransf_9: Prote 99.1 2.7E-10 5.9E-15 106.6 10.3 102 9-114 114-221 (315)
89 PF07021 MetW: Methionine bios 99.1 6.6E-11 1.4E-15 104.0 5.8 103 3-116 6-112 (193)
90 TIGR00138 gidB 16S rRNA methyl 99.1 4.8E-10 1E-14 99.7 11.4 96 10-112 42-142 (181)
91 PF02353 CMAS: Mycolic acid cy 99.1 1.6E-10 3.4E-15 109.2 8.7 100 9-112 61-166 (273)
92 PLN02490 MPBQ/MSBQ methyltrans 99.1 2E-10 4.3E-15 111.3 9.4 120 256-382 115-256 (340)
93 PF13649 Methyltransf_25: Meth 99.1 1.3E-11 2.9E-16 98.9 1.0 93 258-352 1-101 (101)
94 TIGR00537 hemK_rel_arch HemK-r 99.1 8.1E-10 1.7E-14 98.1 12.3 100 10-112 19-140 (179)
95 TIGR00406 prmA ribosomal prote 99.1 2.7E-10 5.8E-15 108.9 9.8 101 6-113 155-260 (288)
96 TIGR03587 Pse_Me-ase pseudamin 99.1 1.7E-10 3.7E-15 104.5 8.1 93 256-358 45-142 (204)
97 smart00138 MeTrc Methyltransfe 99.1 1.4E-10 3.1E-15 109.3 7.7 129 228-360 71-244 (264)
98 COG2230 Cfa Cyclopropane fatty 99.1 3.2E-10 6.8E-15 106.0 9.7 105 9-117 71-181 (283)
99 PF05401 NodS: Nodulation prot 99.1 2E-10 4.3E-15 101.2 7.3 101 10-113 43-147 (201)
100 KOG4300 Predicted methyltransf 99.1 1.3E-10 2.9E-15 101.8 5.7 96 257-359 79-183 (252)
101 TIGR00537 hemK_rel_arch HemK-r 99.1 1E-09 2.2E-14 97.4 11.4 132 256-397 21-177 (179)
102 TIGR00138 gidB 16S rRNA methyl 99.1 2.3E-10 4.9E-15 101.8 7.1 116 256-382 44-169 (181)
103 TIGR02021 BchM-ChlM magnesium 99.1 7.2E-10 1.6E-14 101.7 10.6 98 10-111 55-157 (219)
104 PRK11088 rrmA 23S rRNA methylt 99.1 3.8E-10 8.3E-15 107.0 8.8 95 255-360 86-183 (272)
105 PRK06922 hypothetical protein; 99.1 9.6E-11 2.1E-15 120.4 4.9 101 256-359 420-538 (677)
106 COG2230 Cfa Cyclopropane fatty 99.1 2.5E-10 5.4E-15 106.7 7.1 106 246-358 66-176 (283)
107 PRK14967 putative methyltransf 99.1 8.9E-10 1.9E-14 101.4 10.8 101 10-112 36-159 (223)
108 PRK15001 SAM-dependent 23S rib 99.1 7.3E-10 1.6E-14 108.9 10.6 100 11-112 229-340 (378)
109 TIGR02469 CbiT precorrin-6Y C5 99.1 1.1E-09 2.5E-14 90.4 10.2 98 10-112 19-122 (124)
110 PRK08317 hypothetical protein; 99.1 4.3E-10 9.3E-15 103.9 8.4 98 256-359 21-125 (241)
111 PRK09489 rsmC 16S ribosomal RN 99.1 6.5E-08 1.4E-12 94.4 23.9 130 257-398 199-337 (342)
112 COG2813 RsmC 16S RNA G1207 met 99.1 7.8E-10 1.7E-14 103.7 9.9 126 11-139 159-293 (300)
113 PRK11188 rrmJ 23S rRNA methylt 99.0 1.2E-09 2.6E-14 99.5 10.6 93 9-113 50-166 (209)
114 COG2264 PrmA Ribosomal protein 99.0 2.9E-10 6.3E-15 107.1 6.6 105 3-112 155-263 (300)
115 PRK14121 tRNA (guanine-N(7)-)- 99.0 9.6E-10 2.1E-14 107.7 10.5 101 10-112 122-235 (390)
116 PRK06202 hypothetical protein; 99.0 5E-10 1.1E-14 103.7 8.1 99 254-358 60-166 (232)
117 PRK11873 arsM arsenite S-adeno 99.0 2.6E-10 5.6E-15 108.2 6.1 95 257-358 80-183 (272)
118 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 1.3E-09 2.8E-14 99.7 10.4 101 10-113 39-144 (223)
119 PLN02585 magnesium protoporphy 99.0 1.1E-09 2.4E-14 105.4 10.1 160 10-188 144-312 (315)
120 smart00138 MeTrc Methyltransfe 99.0 5E-10 1.1E-14 105.6 7.6 103 10-112 99-242 (264)
121 PRK11705 cyclopropane fatty ac 99.0 8.1E-10 1.8E-14 109.5 9.1 99 9-113 166-268 (383)
122 PRK08287 cobalt-precorrin-6Y C 99.0 1.5E-09 3.3E-14 97.1 9.8 132 256-398 33-185 (187)
123 PRK00121 trmB tRNA (guanine-N( 99.0 4.6E-10 9.9E-15 101.7 6.4 123 256-381 42-180 (202)
124 PRK00216 ubiE ubiquinone/menaq 99.0 2.9E-09 6.4E-14 98.4 12.0 103 10-113 51-159 (239)
125 COG4976 Predicted methyltransf 99.0 6.7E-11 1.4E-15 105.3 0.6 123 250-380 121-263 (287)
126 PRK06202 hypothetical protein; 99.0 7E-10 1.5E-14 102.7 7.4 99 9-112 59-166 (232)
127 KOG1271 Methyltransferases [Ge 99.0 2E-09 4.3E-14 92.7 9.0 116 9-127 66-194 (227)
128 TIGR00438 rrmJ cell division p 99.0 1.8E-09 4E-14 96.6 9.3 136 256-397 34-187 (188)
129 TIGR00406 prmA ribosomal prote 99.0 1.2E-09 2.5E-14 104.5 8.3 116 256-382 161-283 (288)
130 PRK13255 thiopurine S-methyltr 99.0 1.5E-09 3.3E-14 99.3 8.6 98 10-111 37-154 (218)
131 PRK11188 rrmJ 23S rRNA methylt 99.0 2.5E-09 5.4E-14 97.3 9.9 134 256-397 53-206 (209)
132 PF08003 Methyltransf_9: Prote 99.0 1.5E-09 3.2E-14 101.8 8.3 135 200-357 78-218 (315)
133 PRK00517 prmA ribosomal protei 99.0 3.9E-09 8.4E-14 98.9 11.1 95 8-113 117-214 (250)
134 PRK13944 protein-L-isoaspartat 99.0 2.7E-09 5.9E-14 96.9 9.7 96 9-112 71-173 (205)
135 PRK07580 Mg-protoporphyrin IX 99.0 1.1E-09 2.4E-14 101.0 7.3 95 10-108 63-162 (230)
136 TIGR03840 TMPT_Se_Te thiopurin 99.0 9.7E-10 2.1E-14 100.2 6.7 120 256-382 36-187 (213)
137 PLN03075 nicotianamine synthas 99.0 2.5E-09 5.4E-14 101.1 9.4 102 10-112 123-233 (296)
138 TIGR01983 UbiG ubiquinone bios 99.0 2.9E-09 6.4E-14 97.8 9.5 102 10-113 45-150 (224)
139 PRK05134 bifunctional 3-demeth 99.0 3.1E-09 6.8E-14 98.3 9.7 102 10-113 48-152 (233)
140 PRK08287 cobalt-precorrin-6Y C 99.0 8.5E-09 1.8E-13 92.2 12.1 96 10-112 31-131 (187)
141 PF06325 PrmA: Ribosomal prote 98.9 1.2E-09 2.6E-14 103.8 6.5 104 3-113 154-260 (295)
142 COG4976 Predicted methyltransf 98.9 1.7E-10 3.7E-15 102.7 0.6 97 10-112 125-225 (287)
143 KOG3010 Methyltransferase [Gen 98.9 1.2E-09 2.6E-14 98.3 6.0 95 10-111 33-136 (261)
144 TIGR02021 BchM-ChlM magnesium 98.9 4E-09 8.6E-14 96.8 9.6 96 255-359 56-159 (219)
145 PRK14968 putative methyltransf 98.9 8.2E-09 1.8E-13 91.9 11.1 134 256-397 25-188 (188)
146 PF13659 Methyltransf_26: Meth 98.9 1.2E-09 2.5E-14 89.8 5.0 101 11-112 1-115 (117)
147 PRK04266 fibrillarin; Provisio 98.9 1.2E-08 2.6E-13 93.8 12.2 97 9-111 71-175 (226)
148 PRK13255 thiopurine S-methyltr 98.9 2.6E-09 5.7E-14 97.7 7.8 119 257-382 40-190 (218)
149 TIGR02081 metW methionine bios 98.9 8.2E-10 1.8E-14 99.4 4.4 87 257-351 16-105 (194)
150 PF05148 Methyltransf_8: Hypot 98.9 2.5E-08 5.3E-13 88.6 13.6 149 228-398 32-198 (219)
151 PRK00517 prmA ribosomal protei 98.9 7.7E-09 1.7E-13 96.9 11.0 114 256-383 121-239 (250)
152 COG4123 Predicted O-methyltran 98.9 8.7E-09 1.9E-13 94.7 10.9 102 11-113 45-171 (248)
153 PRK04266 fibrillarin; Provisio 98.9 1.2E-08 2.7E-13 93.7 11.9 142 246-397 66-225 (226)
154 TIGR01177 conserved hypothetic 98.9 8.5E-09 1.8E-13 100.5 11.4 104 9-113 181-295 (329)
155 PRK05134 bifunctional 3-demeth 98.9 1.6E-09 3.6E-14 100.2 6.1 96 256-359 50-152 (233)
156 PRK13942 protein-L-isoaspartat 98.9 5.7E-09 1.2E-13 95.3 9.3 96 9-112 75-176 (212)
157 KOG1541 Predicted protein carb 98.9 2.7E-09 5.8E-14 94.7 6.7 99 10-114 50-162 (270)
158 PRK11783 rlmL 23S rRNA m(2)G24 98.9 3.9E-08 8.4E-13 105.0 16.9 122 256-381 540-679 (702)
159 PRK14968 putative methyltransf 98.9 2.3E-08 5E-13 89.0 12.8 102 9-112 22-148 (188)
160 TIGR03534 RF_mod_PrmC protein- 98.9 1.2E-08 2.7E-13 95.2 11.1 102 9-112 86-217 (251)
161 COG4106 Tam Trans-aconitate me 98.9 4.3E-09 9.4E-14 93.2 7.3 120 250-381 26-156 (257)
162 TIGR03438 probable methyltrans 98.9 1E-08 2.3E-13 98.6 10.7 104 9-112 62-177 (301)
163 TIGR00080 pimt protein-L-isoas 98.9 9.5E-09 2.1E-13 94.0 9.9 96 9-112 76-177 (215)
164 TIGR01983 UbiG ubiquinone bios 98.9 2.7E-09 5.9E-14 98.0 6.3 96 256-359 47-150 (224)
165 TIGR01934 MenG_MenH_UbiE ubiqu 98.9 3.8E-09 8.3E-14 96.6 6.8 97 256-358 41-143 (223)
166 TIGR02081 metW methionine bios 98.9 5.2E-09 1.1E-13 94.2 7.5 92 9-111 12-108 (194)
167 cd02440 AdoMet_MTases S-adenos 98.9 1.4E-08 3E-13 79.9 9.0 98 13-111 1-103 (107)
168 TIGR02716 C20_methyl_CrtF C-20 98.9 9.9E-09 2.1E-13 99.1 9.5 100 10-113 149-255 (306)
169 KOG1975 mRNA cap methyltransfe 98.9 5.1E-09 1.1E-13 97.8 7.1 111 3-113 110-238 (389)
170 TIGR02716 C20_methyl_CrtF C-20 98.9 3.7E-09 8E-14 102.0 6.4 101 253-359 148-255 (306)
171 COG2264 PrmA Ribosomal protein 98.8 1.6E-08 3.4E-13 95.5 10.2 129 254-397 162-298 (300)
172 TIGR02469 CbiT precorrin-6Y C5 98.8 1.6E-08 3.5E-13 83.5 9.3 92 257-357 22-121 (124)
173 TIGR03533 L3_gln_methyl protei 98.8 4.8E-08 1E-12 93.2 13.2 101 10-112 121-251 (284)
174 TIGR00091 tRNA (guanine-N(7)-) 98.8 9.2E-09 2E-13 92.6 7.7 120 256-378 18-154 (194)
175 PRK00216 ubiE ubiquinone/menaq 98.8 9.1E-09 2E-13 95.1 7.7 97 256-358 53-158 (239)
176 PRK00377 cbiT cobalt-precorrin 98.8 2.5E-08 5.4E-13 90.1 10.2 98 10-112 40-145 (198)
177 PRK14121 tRNA (guanine-N(7)-)- 98.8 2E-08 4.2E-13 98.6 10.1 120 257-379 125-258 (390)
178 PRK07580 Mg-protoporphyrin IX 98.8 6.9E-09 1.5E-13 95.7 6.7 97 256-358 65-166 (230)
179 PTZ00146 fibrillarin; Provisio 98.8 3.7E-08 8.1E-13 92.9 11.6 102 249-357 129-236 (293)
180 TIGR00438 rrmJ cell division p 98.8 3.9E-08 8.5E-13 88.0 11.0 94 9-113 31-147 (188)
181 KOG2361 Predicted methyltransf 98.8 8.2E-09 1.8E-13 93.0 6.1 145 11-167 72-231 (264)
182 PLN03075 nicotianamine synthas 98.8 5E-08 1.1E-12 92.4 11.7 134 254-398 123-275 (296)
183 PRK14966 unknown domain/N5-glu 98.8 4.1E-08 8.8E-13 96.9 11.3 102 10-112 251-381 (423)
184 PRK07402 precorrin-6B methylas 98.8 3.8E-08 8.2E-13 88.7 10.2 97 10-112 40-142 (196)
185 PHA03411 putative methyltransf 98.8 3.8E-08 8.2E-13 91.9 10.3 96 10-111 64-182 (279)
186 PTZ00146 fibrillarin; Provisio 98.8 7.4E-08 1.6E-12 90.9 12.2 98 9-111 131-236 (293)
187 KOG3010 Methyltransferase [Gen 98.8 9.3E-09 2E-13 92.7 5.5 114 254-376 33-158 (261)
188 PRK00312 pcm protein-L-isoaspa 98.8 4.6E-08 9.9E-13 89.3 9.8 96 9-112 77-175 (212)
189 PF06325 PrmA: Ribosomal prote 98.7 2.9E-08 6.3E-13 94.4 8.7 130 256-398 163-295 (295)
190 PRK13256 thiopurine S-methyltr 98.7 5.9E-08 1.3E-12 88.8 10.3 104 10-113 43-164 (226)
191 TIGR00536 hemK_fam HemK family 98.7 5.9E-08 1.3E-12 92.6 10.8 134 256-398 116-283 (284)
192 TIGR00536 hemK_fam HemK family 98.7 7.9E-08 1.7E-12 91.8 11.7 99 12-112 116-244 (284)
193 PRK00377 cbiT cobalt-precorrin 98.7 4E-08 8.6E-13 88.7 8.6 114 257-379 43-167 (198)
194 PRK10901 16S rRNA methyltransf 98.7 6.9E-08 1.5E-12 97.4 11.2 104 9-113 243-373 (427)
195 PRK11805 N5-glutamine S-adenos 98.7 5E-08 1.1E-12 93.9 9.7 99 12-112 135-263 (307)
196 PF03291 Pox_MCEL: mRNA cappin 98.7 1.9E-08 4E-13 97.5 6.6 104 10-113 62-187 (331)
197 PRK09328 N5-glutamine S-adenos 98.7 1.2E-07 2.6E-12 89.9 11.9 102 10-112 108-238 (275)
198 PLN02232 ubiquinone biosynthes 98.7 5.2E-08 1.1E-12 84.9 8.3 80 34-114 1-83 (160)
199 COG2890 HemK Methylase of poly 98.7 1.8E-07 3.9E-12 88.9 12.2 110 13-127 113-251 (280)
200 PRK09328 N5-glutamine S-adenos 98.7 1.3E-07 2.8E-12 89.7 11.1 134 256-397 110-275 (275)
201 TIGR03438 probable methyltrans 98.7 2.9E-08 6.4E-13 95.5 6.7 99 256-357 65-176 (301)
202 TIGR03534 RF_mod_PrmC protein- 98.7 7.2E-08 1.6E-12 90.0 9.1 120 256-380 89-239 (251)
203 PRK00811 spermidine synthase; 98.7 2.1E-07 4.5E-12 88.7 12.1 103 9-112 75-191 (283)
204 PF05148 Methyltransf_8: Hypot 98.7 6.3E-08 1.4E-12 86.1 7.9 85 11-112 73-158 (219)
205 KOG3045 Predicted RNA methylas 98.7 4.2E-07 9.1E-12 82.7 13.2 136 228-384 140-293 (325)
206 PRK13944 protein-L-isoaspartat 98.7 6.3E-08 1.4E-12 87.9 7.5 92 257-359 75-174 (205)
207 cd02440 AdoMet_MTases S-adenos 98.6 5.9E-08 1.3E-12 76.2 6.3 95 257-357 1-103 (107)
208 PRK14966 unknown domain/N5-glu 98.6 1.4E-07 3E-12 93.2 10.0 135 257-397 254-418 (423)
209 PRK14967 putative methyltransf 98.6 1.9E-07 4.1E-12 85.9 10.0 117 256-379 38-181 (223)
210 PLN02585 magnesium protoporphy 98.6 6.5E-08 1.4E-12 93.2 6.8 93 256-355 146-247 (315)
211 PF02390 Methyltransf_4: Putat 98.6 9.9E-08 2.2E-12 85.8 7.6 104 7-112 14-133 (195)
212 TIGR03704 PrmC_rel_meth putati 98.6 3.7E-07 8E-12 85.5 11.4 100 11-113 87-217 (251)
213 TIGR00080 pimt protein-L-isoas 98.6 9.4E-08 2E-12 87.4 7.2 91 257-358 80-177 (215)
214 PRK07402 precorrin-6B methylas 98.6 3E-07 6.4E-12 82.9 10.2 107 257-373 43-158 (196)
215 TIGR00563 rsmB ribosomal RNA s 98.6 2.8E-07 6E-12 93.1 10.7 104 9-113 237-369 (426)
216 PF05219 DREV: DREV methyltran 98.6 1.7E-07 3.8E-12 86.0 8.2 93 10-112 94-188 (265)
217 smart00650 rADc Ribosomal RNA 98.6 1.8E-07 3.9E-12 82.3 7.7 96 10-111 13-112 (169)
218 TIGR00446 nop2p NOL1/NOP2/sun 98.6 3.4E-07 7.4E-12 86.4 10.0 104 9-113 70-200 (264)
219 PF05219 DREV: DREV methyltran 98.6 2E-07 4.2E-12 85.7 7.9 92 254-357 94-187 (265)
220 PRK14904 16S rRNA methyltransf 98.6 2.2E-07 4.8E-12 94.2 9.2 103 9-113 249-378 (445)
221 TIGR03533 L3_gln_methyl protei 98.6 3.5E-07 7.5E-12 87.3 10.0 121 256-382 123-274 (284)
222 KOG1541 Predicted protein carb 98.6 7E-07 1.5E-11 79.5 11.0 109 245-358 41-160 (270)
223 PRK14901 16S rRNA methyltransf 98.6 3.7E-07 8.1E-12 92.3 10.6 104 9-113 251-385 (434)
224 PRK14903 16S rRNA methyltransf 98.5 4.5E-07 9.7E-12 91.5 10.9 104 9-113 236-367 (431)
225 PRK04457 spermidine synthase; 98.5 3.2E-07 7E-12 86.4 9.3 104 9-112 65-177 (262)
226 COG2813 RsmC 16S RNA G1207 met 98.5 1.1E-05 2.3E-10 76.2 19.1 129 257-398 161-300 (300)
227 PF05891 Methyltransf_PK: AdoM 98.5 1.4E-07 3.1E-12 84.6 6.3 103 10-112 55-161 (218)
228 PHA03412 putative methyltransf 98.5 3.1E-07 6.8E-12 83.9 8.6 91 11-107 50-158 (241)
229 TIGR01177 conserved hypothetic 98.5 2.5E-07 5.5E-12 90.2 8.5 111 257-375 185-309 (329)
230 PLN02232 ubiquinone biosynthes 98.5 8.1E-08 1.8E-12 83.7 4.3 71 286-360 2-83 (160)
231 PF01135 PCMT: Protein-L-isoas 98.5 1.9E-07 4.1E-12 84.8 6.7 96 9-112 71-172 (209)
232 PF05175 MTS: Methyltransferas 98.5 1.4E-07 3.1E-12 83.0 5.8 118 255-382 32-162 (170)
233 PRK13943 protein-L-isoaspartat 98.5 4.4E-07 9.5E-12 87.7 9.6 95 10-112 80-180 (322)
234 PRK11805 N5-glutamine S-adenos 98.5 3.6E-07 7.9E-12 88.0 9.0 113 256-374 135-278 (307)
235 PF00891 Methyltransf_2: O-met 98.5 2E-07 4.4E-12 86.7 6.7 102 250-359 96-200 (241)
236 COG2518 Pcm Protein-L-isoaspar 98.5 5.6E-07 1.2E-11 80.5 9.0 95 9-112 71-169 (209)
237 PF05891 Methyltransf_PK: AdoM 98.5 5.2E-07 1.1E-11 81.1 8.8 129 253-385 54-204 (218)
238 COG0220 Predicted S-adenosylme 98.5 4.6E-07 9.9E-12 83.1 8.6 99 12-112 50-164 (227)
239 PRK13942 protein-L-isoaspartat 98.5 3.4E-07 7.5E-12 83.5 7.7 92 256-359 78-177 (212)
240 KOG3045 Predicted RNA methylas 98.5 4.8E-07 1E-11 82.3 7.8 84 11-112 181-264 (325)
241 COG2890 HemK Methylase of poly 98.5 1.4E-06 3.1E-11 82.7 11.1 130 257-397 113-276 (280)
242 KOG2361 Predicted methyltransf 98.4 3.9E-07 8.6E-12 82.3 6.8 110 247-358 64-183 (264)
243 PRK15128 23S rRNA m(5)C1962 me 98.4 1.1E-06 2.3E-11 87.5 10.6 113 10-123 220-350 (396)
244 TIGR00417 speE spermidine synt 98.4 1.7E-06 3.6E-11 82.0 11.3 103 9-112 71-186 (270)
245 PRK14902 16S rRNA methyltransf 98.4 9.4E-07 2E-11 89.7 9.6 103 9-113 249-380 (444)
246 PRK01581 speE spermidine synth 98.4 1.5E-06 3.3E-11 84.3 10.4 103 9-112 149-268 (374)
247 TIGR03704 PrmC_rel_meth putati 98.4 1.1E-06 2.4E-11 82.3 9.3 124 256-383 88-241 (251)
248 COG4123 Predicted O-methyltran 98.4 2.2E-06 4.7E-11 79.0 10.4 127 255-384 45-196 (248)
249 PF13659 Methyltransf_26: Meth 98.4 8.5E-08 1.8E-12 78.6 1.0 97 257-358 3-115 (117)
250 PF01728 FtsJ: FtsJ-like methy 98.4 1.3E-06 2.9E-11 77.6 8.3 143 250-397 19-180 (181)
251 PRK00312 pcm protein-L-isoaspa 98.4 7.9E-07 1.7E-11 81.1 7.0 88 256-359 80-176 (212)
252 PLN02366 spermidine synthase 98.4 2.9E-06 6.2E-11 81.6 11.0 103 9-112 90-206 (308)
253 COG2242 CobL Precorrin-6B meth 98.4 4.7E-06 1E-10 73.1 11.2 97 9-112 33-135 (187)
254 PRK04457 spermidine synthase; 98.4 1.9E-06 4E-11 81.3 9.2 100 254-357 66-176 (262)
255 PF06080 DUF938: Protein of un 98.3 1.4E-06 3E-11 77.9 7.6 100 12-113 27-142 (204)
256 COG2519 GCD14 tRNA(1-methylade 98.3 4.1E-06 8.9E-11 76.7 10.7 96 9-112 93-195 (256)
257 PRK03612 spermidine synthase; 98.3 2.6E-06 5.6E-11 88.1 10.5 103 9-112 296-415 (521)
258 KOG2899 Predicted methyltransf 98.3 2.2E-06 4.8E-11 77.4 8.4 102 10-111 58-208 (288)
259 PF05724 TPMT: Thiopurine S-me 98.3 1.5E-06 3.3E-11 79.4 7.4 98 10-111 37-154 (218)
260 PF02390 Methyltransf_4: Putat 98.3 1.1E-06 2.3E-11 79.1 6.1 123 257-379 20-157 (195)
261 PRK13168 rumA 23S rRNA m(5)U19 98.3 2.5E-06 5.5E-11 86.6 9.4 99 10-114 297-402 (443)
262 COG2242 CobL Precorrin-6B meth 98.3 1.5E-05 3.3E-10 69.9 12.7 119 249-380 31-159 (187)
263 PRK11783 rlmL 23S rRNA m(2)G24 98.3 2.3E-06 5.1E-11 91.5 8.9 103 10-113 538-657 (702)
264 PRK00811 spermidine synthase; 98.3 1.6E-06 3.5E-11 82.6 6.6 101 254-357 76-190 (283)
265 PLN02781 Probable caffeoyl-CoA 98.3 4E-06 8.6E-11 77.7 8.9 97 10-111 68-177 (234)
266 PF00891 Methyltransf_2: O-met 98.3 3E-06 6.5E-11 78.8 8.1 93 10-112 100-199 (241)
267 PRK10909 rsmD 16S rRNA m(2)G96 98.2 3.4E-06 7.3E-11 76.0 7.9 101 10-113 53-160 (199)
268 PF01739 CheR: CheR methyltran 98.2 1.1E-06 2.3E-11 79.0 4.6 103 10-112 31-175 (196)
269 PRK13256 thiopurine S-methyltr 98.2 3.2E-06 6.9E-11 77.4 7.3 94 256-357 45-162 (226)
270 KOG1271 Methyltransferases [Ge 98.2 4.2E-06 9.1E-11 72.5 7.4 115 257-375 70-198 (227)
271 PRK10611 chemotaxis methyltran 98.2 1.9E-06 4.2E-11 81.7 6.0 102 11-112 116-262 (287)
272 PF10294 Methyltransf_16: Puta 98.2 5.3E-06 1.1E-10 73.2 8.3 102 9-113 44-157 (173)
273 PRK14903 16S rRNA methyltransf 98.2 3.3E-06 7.2E-11 85.2 7.9 113 257-371 240-383 (431)
274 PRK01581 speE spermidine synth 98.2 8.7E-06 1.9E-10 79.1 10.3 103 253-359 149-269 (374)
275 PRK03522 rumB 23S rRNA methylu 98.2 5.7E-06 1.2E-10 80.2 8.7 100 10-114 173-276 (315)
276 PRK01544 bifunctional N5-gluta 98.2 4.8E-06 1E-10 85.6 8.5 103 8-112 345-462 (506)
277 PRK14901 16S rRNA methyltransf 98.2 4.6E-06 1E-10 84.4 8.2 119 257-377 255-408 (434)
278 KOG2904 Predicted methyltransf 98.2 1.6E-05 3.6E-10 73.1 10.8 115 11-127 149-299 (328)
279 PRK14904 16S rRNA methyltransf 98.2 2.5E-06 5.4E-11 86.6 6.1 113 256-372 252-395 (445)
280 PRK10901 16S rRNA methyltransf 98.2 3.3E-06 7.1E-11 85.3 6.9 114 256-372 246-390 (427)
281 PLN02672 methionine S-methyltr 98.2 1.3E-05 2.7E-10 88.1 11.6 100 11-112 119-278 (1082)
282 PF01739 CheR: CheR methyltran 98.2 3.2E-06 7E-11 75.9 5.9 128 230-360 5-177 (196)
283 TIGR00446 nop2p NOL1/NOP2/sun 98.1 6E-06 1.3E-10 78.0 7.3 100 257-358 74-199 (264)
284 PRK13943 protein-L-isoaspartat 98.1 7.7E-06 1.7E-10 79.1 8.1 101 246-359 74-181 (322)
285 TIGR00563 rsmB ribosomal RNA s 98.1 8.7E-06 1.9E-10 82.2 8.7 100 256-358 240-368 (426)
286 KOG1499 Protein arginine N-met 98.1 8.2E-06 1.8E-10 77.9 7.2 100 10-111 60-166 (346)
287 KOG1269 SAM-dependent methyltr 98.1 3.4E-06 7.5E-11 82.5 4.7 92 257-358 113-215 (364)
288 PRK11727 23S rRNA mA1618 methy 98.1 2.2E-05 4.7E-10 75.8 10.2 78 10-88 114-203 (321)
289 PF06080 DUF938: Protein of un 98.1 7.1E-06 1.5E-10 73.4 6.3 134 257-397 28-204 (204)
290 PRK14902 16S rRNA methyltransf 98.1 1.1E-05 2.4E-10 81.9 8.2 120 256-377 252-403 (444)
291 COG0220 Predicted S-adenosylme 98.0 9.6E-06 2.1E-10 74.4 6.6 103 256-360 50-166 (227)
292 PHA03411 putative methyltransf 98.0 8.2E-06 1.8E-10 76.4 5.7 96 256-357 66-182 (279)
293 PF08704 GCD14: tRNA methyltra 98.0 4.3E-05 9.3E-10 71.0 10.2 97 9-112 39-146 (247)
294 TIGR00478 tly hemolysin TlyA f 98.0 7.9E-06 1.7E-10 75.1 5.1 87 10-111 75-170 (228)
295 TIGR00417 speE spermidine synt 98.0 4.8E-05 1E-09 72.1 10.6 100 255-358 73-186 (270)
296 TIGR00479 rumA 23S rRNA (uraci 98.0 2.1E-05 4.5E-10 79.6 8.6 99 10-113 292-397 (431)
297 COG4122 Predicted O-methyltran 98.0 2.2E-05 4.7E-10 71.3 7.6 98 10-112 59-166 (219)
298 KOG3191 Predicted N6-DNA-methy 98.0 0.0001 2.2E-09 64.0 11.0 111 10-123 43-178 (209)
299 PLN02781 Probable caffeoyl-CoA 97.9 3.5E-05 7.6E-10 71.4 8.6 96 254-357 68-177 (234)
300 COG1041 Predicted DNA modifica 97.9 3E-05 6.5E-10 74.5 8.1 104 9-113 196-311 (347)
301 TIGR00478 tly hemolysin TlyA f 97.9 1.8E-05 3.9E-10 72.7 6.3 109 256-382 77-217 (228)
302 KOG2940 Predicted methyltransf 97.9 6.5E-06 1.4E-10 73.8 3.0 98 253-357 71-173 (325)
303 COG2263 Predicted RNA methylas 97.9 5.1E-05 1.1E-09 66.5 8.4 89 10-102 45-137 (198)
304 TIGR02085 meth_trns_rumB 23S r 97.9 3.4E-05 7.5E-10 76.5 8.2 99 10-113 233-335 (374)
305 PRK03612 spermidine synthase; 97.9 2.9E-05 6.3E-10 80.3 7.9 119 254-375 297-437 (521)
306 PRK13168 rumA 23S rRNA m(5)U19 97.9 0.00015 3.2E-09 73.7 12.1 115 256-382 299-424 (443)
307 COG0500 SmtA SAM-dependent met 97.8 0.00012 2.6E-09 61.3 9.7 97 14-113 52-156 (257)
308 PLN02366 spermidine synthase 97.8 2.3E-05 5E-10 75.4 5.7 102 254-357 91-205 (308)
309 PRK10611 chemotaxis methyltran 97.8 2E-05 4.4E-10 74.8 5.3 43 317-360 222-264 (287)
310 PF01596 Methyltransf_3: O-met 97.8 3.5E-05 7.6E-10 69.8 6.5 97 10-111 45-154 (205)
311 TIGR00479 rumA 23S rRNA (uraci 97.8 6.5E-05 1.4E-09 76.1 9.2 113 257-381 295-419 (431)
312 PLN02476 O-methyltransferase 97.8 5.5E-05 1.2E-09 71.4 8.0 97 10-111 118-227 (278)
313 KOG1331 Predicted methyltransf 97.8 1.1E-05 2.4E-10 74.8 3.2 97 11-113 46-144 (293)
314 COG2521 Predicted archaeal met 97.8 2.6E-05 5.6E-10 70.3 5.2 103 9-112 133-245 (287)
315 PF12147 Methyltransf_20: Puta 97.8 0.00023 4.9E-09 66.6 11.5 146 9-167 134-292 (311)
316 PRK03522 rumB 23S rRNA methylu 97.8 7.4E-05 1.6E-09 72.4 8.5 112 256-381 175-295 (315)
317 COG3963 Phospholipid N-methylt 97.8 7.8E-05 1.7E-09 63.9 7.1 98 10-112 48-156 (194)
318 KOG1499 Protein arginine N-met 97.8 3.6E-05 7.9E-10 73.6 5.7 97 256-357 62-166 (346)
319 COG2521 Predicted archaeal met 97.8 0.00012 2.5E-09 66.2 8.5 132 256-398 136-287 (287)
320 PRK14896 ksgA 16S ribosomal RN 97.8 5E-05 1.1E-09 71.5 6.4 70 10-83 29-100 (258)
321 smart00650 rADc Ribosomal RNA 97.8 6.6E-05 1.4E-09 65.9 6.7 93 257-359 16-114 (169)
322 COG1352 CheR Methylase of chem 97.8 5.1E-05 1.1E-09 71.2 6.2 103 10-112 96-241 (268)
323 PRK00274 ksgA 16S ribosomal RN 97.7 4.2E-05 9.1E-10 72.6 5.7 72 9-83 41-114 (272)
324 PF05185 PRMT5: PRMT5 arginine 97.7 7.9E-05 1.7E-09 75.3 7.8 96 11-109 187-294 (448)
325 PF03291 Pox_MCEL: mRNA cappin 97.7 3.9E-05 8.5E-10 74.5 5.3 124 231-360 38-188 (331)
326 PLN02476 O-methyltransferase 97.7 8.9E-05 1.9E-09 70.0 7.5 130 254-398 118-278 (278)
327 KOG1975 mRNA cap methyltransfe 97.7 7.3E-05 1.6E-09 70.4 6.5 63 315-378 192-258 (389)
328 PF07942 N2227: N2227-like pro 97.7 0.00013 2.7E-09 68.5 8.0 135 9-144 55-241 (270)
329 COG0500 SmtA SAM-dependent met 97.7 0.0001 2.2E-09 61.6 6.8 94 258-360 52-157 (257)
330 PHA03412 putative methyltransf 97.7 0.0001 2.2E-09 67.6 7.0 98 256-357 51-161 (241)
331 TIGR00755 ksgA dimethyladenosi 97.7 0.00016 3.5E-09 67.8 8.6 73 10-87 29-106 (253)
332 PRK04148 hypothetical protein; 97.7 0.00011 2.4E-09 61.4 6.6 63 256-325 18-84 (134)
333 PRK11933 yebU rRNA (cytosine-C 97.7 0.00041 8.8E-09 70.5 11.9 103 9-112 112-242 (470)
334 PLN02823 spermine synthase 97.7 0.00025 5.4E-09 69.0 10.0 103 9-112 102-220 (336)
335 KOG1269 SAM-dependent methyltr 97.7 5.4E-05 1.2E-09 74.2 5.3 102 9-112 109-215 (364)
336 PRK00536 speE spermidine synth 97.7 0.00068 1.5E-08 63.5 12.3 96 9-112 71-171 (262)
337 KOG1331 Predicted methyltransf 97.7 2E-05 4.3E-10 73.2 2.0 92 258-357 49-142 (293)
338 COG0421 SpeE Spermidine syntha 97.7 0.0003 6.6E-09 66.6 10.0 98 10-113 76-191 (282)
339 PF02527 GidB: rRNA small subu 97.6 0.00054 1.2E-08 60.9 10.5 110 6-124 44-158 (184)
340 TIGR00095 RNA methyltransferas 97.6 0.00057 1.2E-08 61.2 10.0 100 10-112 49-159 (189)
341 TIGR02085 meth_trns_rumB 23S r 97.6 0.00039 8.4E-09 69.0 9.8 113 256-382 235-356 (374)
342 PF05724 TPMT: Thiopurine S-me 97.6 8.6E-05 1.9E-09 67.9 4.7 119 256-381 39-189 (218)
343 PTZ00338 dimethyladenosine tra 97.6 0.00014 3.1E-09 69.5 6.4 76 10-88 36-114 (294)
344 PF05185 PRMT5: PRMT5 arginine 97.6 0.00013 2.8E-09 73.8 6.3 129 227-357 153-296 (448)
345 COG2519 GCD14 tRNA(1-methylade 97.6 0.0004 8.7E-09 63.8 8.8 113 248-375 90-213 (256)
346 PRK15128 23S rRNA m(5)C1962 me 97.5 0.00016 3.4E-09 72.1 6.6 120 256-380 222-367 (396)
347 PF11968 DUF3321: Putative met 97.5 0.0002 4.4E-09 64.3 6.6 86 12-113 53-150 (219)
348 PF01170 UPF0020: Putative RNA 97.5 0.00026 5.6E-09 62.8 7.2 101 10-111 28-150 (179)
349 PF02527 GidB: rRNA small subu 97.5 0.0007 1.5E-08 60.2 9.9 140 232-381 26-174 (184)
350 PRK04338 N(2),N(2)-dimethylgua 97.5 0.00025 5.4E-09 70.4 7.8 96 11-112 58-158 (382)
351 KOG1661 Protein-L-isoaspartate 97.5 0.0002 4.4E-09 63.6 5.9 97 8-111 80-192 (237)
352 COG1352 CheR Methylase of chem 97.5 0.00043 9.3E-09 65.0 8.4 107 254-362 96-245 (268)
353 PF10294 Methyltransf_16: Puta 97.5 0.00011 2.3E-09 64.9 4.0 99 253-359 44-157 (173)
354 PLN02589 caffeoyl-CoA O-methyl 97.5 0.00025 5.4E-09 66.0 6.4 97 10-111 79-189 (247)
355 PF01135 PCMT: Protein-L-isoas 97.4 0.00013 2.9E-09 66.2 4.2 102 243-359 63-173 (209)
356 PRK04148 hypothetical protein; 97.4 0.00048 1E-08 57.6 7.1 91 10-113 16-110 (134)
357 PRK11760 putative 23S rRNA C24 97.4 0.086 1.9E-06 51.1 23.3 90 256-357 213-304 (357)
358 PF07942 N2227: N2227-like pro 97.4 0.0021 4.5E-08 60.4 12.1 63 317-382 164-242 (270)
359 KOG2352 Predicted spermine/spe 97.4 0.00034 7.3E-09 69.8 7.1 106 7-113 44-162 (482)
360 COG4122 Predicted O-methyltran 97.4 0.00025 5.3E-09 64.5 5.7 135 254-398 59-218 (219)
361 KOG3987 Uncharacterized conser 97.4 7E-05 1.5E-09 66.2 1.9 97 5-111 107-206 (288)
362 KOG3178 Hydroxyindole-O-methyl 97.4 0.00045 9.7E-09 66.3 7.4 95 11-113 178-276 (342)
363 COG2518 Pcm Protein-L-isoaspar 97.4 0.00051 1.1E-08 61.7 7.0 99 243-359 63-170 (209)
364 COG4627 Uncharacterized protei 97.4 2.6E-05 5.5E-10 65.8 -1.3 46 313-359 41-87 (185)
365 PF01564 Spermine_synth: Sperm 97.3 0.001 2.2E-08 62.1 9.1 103 9-112 75-191 (246)
366 PLN02672 methionine S-methyltr 97.3 0.00051 1.1E-08 75.8 8.0 120 256-378 120-299 (1082)
367 PF01596 Methyltransf_3: O-met 97.3 0.00017 3.8E-09 65.2 3.7 133 254-398 45-205 (205)
368 KOG2904 Predicted methyltransf 97.3 0.0019 4.1E-08 59.8 10.2 97 257-359 151-286 (328)
369 KOG2899 Predicted methyltransf 97.3 0.00062 1.3E-08 61.9 6.8 42 317-358 165-209 (288)
370 PRK10909 rsmD 16S rRNA m(2)G96 97.3 0.00038 8.3E-09 62.7 5.2 124 257-397 56-190 (199)
371 PF12147 Methyltransf_20: Puta 97.3 0.00095 2.1E-08 62.6 7.7 126 253-379 134-276 (311)
372 KOG1500 Protein arginine N-met 97.2 0.00086 1.9E-08 63.6 6.9 99 10-111 177-281 (517)
373 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.2 0.00066 1.4E-08 63.3 6.2 39 74-112 158-199 (256)
374 COG1092 Predicted SAM-dependen 97.2 0.0028 6E-08 62.8 10.7 109 11-120 218-344 (393)
375 KOG3420 Predicted RNA methylas 97.2 0.00037 8.1E-09 58.3 3.8 73 10-83 48-123 (185)
376 PF02475 Met_10: Met-10+ like- 97.2 0.00056 1.2E-08 61.6 5.2 94 9-109 100-199 (200)
377 TIGR02143 trmA_only tRNA (urac 97.2 0.00089 1.9E-08 65.9 7.0 96 12-114 199-313 (353)
378 PF01728 FtsJ: FtsJ-like methy 97.2 0.0011 2.3E-08 58.8 6.8 104 10-118 23-145 (181)
379 PRK05031 tRNA (uracil-5-)-meth 97.2 0.001 2.2E-08 65.7 7.3 96 12-114 208-322 (362)
380 TIGR03439 methyl_EasF probable 97.1 0.0025 5.4E-08 61.6 9.4 115 10-126 76-210 (319)
381 PF03602 Cons_hypoth95: Conser 97.1 0.00073 1.6E-08 60.1 5.2 103 9-113 41-154 (183)
382 PF11968 DUF3321: Putative met 97.1 0.0042 9E-08 56.0 9.5 113 257-382 54-181 (219)
383 COG0357 GidB Predicted S-adeno 97.0 0.0095 2.1E-07 54.1 11.7 151 233-395 46-209 (215)
384 KOG3178 Hydroxyindole-O-methyl 97.0 0.0036 7.8E-08 60.2 9.3 99 253-359 176-276 (342)
385 PF02384 N6_Mtase: N-6 DNA Met 97.0 0.0013 2.8E-08 63.6 6.1 103 10-113 46-184 (311)
386 PF10672 Methyltrans_SAM: S-ad 96.9 0.0029 6.2E-08 60.2 7.6 103 10-113 123-239 (286)
387 PF09243 Rsm22: Mitochondrial 96.9 0.0041 9E-08 59.0 8.6 99 10-113 33-140 (274)
388 COG0293 FtsJ 23S rRNA methylas 96.9 0.016 3.5E-07 52.0 11.3 99 9-118 44-165 (205)
389 TIGR02987 met_A_Alw26 type II 96.8 0.0039 8.6E-08 64.8 8.5 77 10-86 31-124 (524)
390 PRK11760 putative 23S rRNA C24 96.8 0.031 6.7E-07 54.1 13.8 110 9-131 210-325 (357)
391 PF09243 Rsm22: Mitochondrial 96.8 0.0054 1.2E-07 58.2 8.7 122 254-381 33-167 (274)
392 COG1189 Predicted rRNA methyla 96.8 0.014 3E-07 53.4 10.7 117 256-382 81-224 (245)
393 COG3897 Predicted methyltransf 96.8 0.0035 7.6E-08 55.3 6.4 102 10-117 79-183 (218)
394 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.8 0.0075 1.6E-07 56.3 9.0 82 316-397 156-256 (256)
395 PRK11933 yebU rRNA (cytosine-C 96.7 0.004 8.8E-08 63.4 7.3 100 257-358 116-242 (470)
396 PLN02823 spermine synthase 96.7 0.01 2.2E-07 57.9 9.8 100 254-357 103-219 (336)
397 KOG1663 O-methyltransferase [S 96.7 0.0085 1.8E-07 54.3 8.5 97 10-111 73-182 (237)
398 PRK14896 ksgA 16S ribosomal RN 96.7 0.0024 5.1E-08 60.1 5.3 62 256-325 31-98 (258)
399 PRK00274 ksgA 16S ribosomal RN 96.6 0.0026 5.6E-08 60.4 5.0 64 256-325 44-112 (272)
400 COG0742 N6-adenine-specific me 96.6 0.0095 2.1E-07 52.7 8.1 103 10-113 43-155 (187)
401 TIGR02143 trmA_only tRNA (urac 96.6 0.012 2.5E-07 58.0 9.7 110 257-382 200-334 (353)
402 PF08704 GCD14: tRNA methyltra 96.6 0.0037 8E-08 58.1 5.8 120 248-377 36-166 (247)
403 PF01269 Fibrillarin: Fibrilla 96.6 0.011 2.3E-07 53.6 8.4 120 257-383 76-213 (229)
404 COG0030 KsgA Dimethyladenosine 96.6 0.0039 8.5E-08 58.1 5.8 76 10-88 30-108 (259)
405 COG2265 TrmA SAM-dependent met 96.5 0.0085 1.8E-07 60.4 8.2 99 10-113 293-397 (432)
406 KOG0820 Ribosomal RNA adenine 96.5 0.0047 1E-07 57.2 5.7 74 9-88 57-136 (315)
407 COG0144 Sun tRNA and rRNA cyto 96.5 0.017 3.6E-07 56.9 9.9 105 8-113 154-289 (355)
408 PF02475 Met_10: Met-10+ like- 96.5 0.0014 3E-08 59.1 2.0 91 257-355 104-199 (200)
409 TIGR00755 ksgA dimethyladenosi 96.5 0.0096 2.1E-07 55.8 7.8 39 255-298 30-69 (253)
410 KOG1500 Protein arginine N-met 96.5 0.0038 8.3E-08 59.3 4.7 115 256-376 179-307 (517)
411 KOG1709 Guanidinoacetate methy 96.4 0.01 2.2E-07 53.3 6.8 102 9-112 100-206 (271)
412 PF01269 Fibrillarin: Fibrilla 96.4 0.011 2.5E-07 53.5 7.2 98 9-112 72-178 (229)
413 COG0293 FtsJ 23S rRNA methylas 96.4 0.011 2.4E-07 53.1 6.9 131 257-397 48-200 (205)
414 COG4627 Uncharacterized protei 96.3 0.0011 2.5E-08 56.0 0.3 49 65-113 38-87 (185)
415 KOG1663 O-methyltransferase [S 96.3 0.0056 1.2E-07 55.5 4.6 97 255-358 74-183 (237)
416 PRK00536 speE spermidine synth 96.3 0.017 3.6E-07 54.3 7.9 91 252-358 70-171 (262)
417 PLN02589 caffeoyl-CoA O-methyl 96.2 0.0056 1.2E-07 57.1 4.5 96 254-357 79-189 (247)
418 KOG3191 Predicted N6-DNA-methy 96.1 0.061 1.3E-06 47.1 10.0 127 255-383 44-194 (209)
419 COG0357 GidB Predicted S-adeno 96.1 0.027 5.8E-07 51.2 8.2 94 11-111 68-167 (215)
420 PF08123 DOT1: Histone methyla 96.1 0.0063 1.4E-07 55.1 3.9 99 10-110 42-156 (205)
421 COG0116 Predicted N6-adenine-s 96.0 0.036 7.8E-07 54.4 9.1 80 33-113 257-345 (381)
422 PRK04338 N(2),N(2)-dimethylgua 96.0 0.0077 1.7E-07 59.9 4.6 92 257-358 60-158 (382)
423 COG1092 Predicted SAM-dependen 96.0 0.022 4.8E-07 56.5 7.7 113 257-373 220-357 (393)
424 COG2520 Predicted methyltransf 96.0 0.021 4.5E-07 55.5 7.2 99 9-113 187-290 (341)
425 KOG3987 Uncharacterized conser 96.0 0.0015 3.2E-08 58.0 -0.7 91 255-357 113-206 (288)
426 TIGR00308 TRM1 tRNA(guanine-26 95.9 0.023 5E-07 56.2 7.5 94 12-111 46-146 (374)
427 COG2263 Predicted RNA methylas 95.9 0.012 2.5E-07 51.9 4.7 68 257-328 48-118 (198)
428 PF03269 DUF268: Caenorhabditi 95.9 0.0056 1.2E-07 52.4 2.6 66 314-379 59-144 (177)
429 KOG1709 Guanidinoacetate methy 95.9 0.027 5.9E-07 50.5 6.8 115 235-358 84-206 (271)
430 PRK05031 tRNA (uracil-5-)-meth 95.9 0.037 8.1E-07 54.7 8.7 110 257-382 209-343 (362)
431 PF13679 Methyltransf_32: Meth 95.8 0.059 1.3E-06 45.6 8.7 94 9-111 24-130 (141)
432 PTZ00338 dimethyladenosine tra 95.8 0.0058 1.2E-07 58.6 2.6 61 257-325 39-108 (294)
433 KOG3115 Methyltransferase-like 95.7 0.02 4.3E-07 50.9 5.4 102 257-360 63-185 (249)
434 COG1041 Predicted DNA modifica 95.7 0.063 1.4E-06 52.0 9.0 121 257-382 200-334 (347)
435 PLN02668 indole-3-acetate carb 95.7 0.051 1.1E-06 53.7 8.6 78 11-89 64-176 (386)
436 KOG2798 Putative trehalase [Ca 95.6 0.057 1.2E-06 51.2 8.3 143 230-381 124-336 (369)
437 PF05958 tRNA_U5-meth_tr: tRNA 95.6 0.015 3.3E-07 57.2 4.8 97 10-113 196-311 (352)
438 TIGR00095 RNA methyltransferas 95.6 0.018 3.9E-07 51.5 4.7 96 257-360 52-161 (189)
439 COG0421 SpeE Spermidine syntha 95.6 0.027 5.8E-07 53.5 6.1 116 252-376 74-213 (282)
440 COG1189 Predicted rRNA methyla 95.5 0.14 3E-06 46.9 10.3 94 9-112 78-178 (245)
441 PRK11727 23S rRNA mA1618 methy 95.5 0.048 1E-06 52.8 7.7 24 252-275 112-135 (321)
442 COG4798 Predicted methyltransf 95.5 0.066 1.4E-06 47.4 7.6 103 9-113 47-167 (238)
443 COG4798 Predicted methyltransf 95.4 0.048 1E-06 48.2 6.7 107 249-358 45-166 (238)
444 KOG3201 Uncharacterized conser 95.2 0.016 3.5E-07 49.6 2.9 105 11-118 30-146 (201)
445 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.2 0.027 5.9E-07 53.7 4.8 103 9-113 84-220 (283)
446 PF01170 UPF0020: Putative RNA 95.1 0.04 8.7E-07 48.8 5.5 121 257-381 31-170 (179)
447 PRK00050 16S rRNA m(4)C1402 me 95.1 0.015 3.2E-07 55.6 2.8 38 9-46 18-60 (296)
448 PF09445 Methyltransf_15: RNA 95.1 0.037 8.1E-07 48.1 4.9 70 12-82 1-77 (163)
449 COG3963 Phospholipid N-methylt 95.0 0.061 1.3E-06 46.5 5.7 97 257-357 51-155 (194)
450 PF06859 Bin3: Bicoid-interact 94.9 0.013 2.9E-07 46.9 1.6 58 319-376 2-70 (110)
451 PF03059 NAS: Nicotianamine sy 94.9 0.15 3.2E-06 48.2 8.7 102 10-112 120-230 (276)
452 KOG2915 tRNA(1-methyladenosine 94.8 0.17 3.6E-06 47.3 8.7 96 9-111 104-208 (314)
453 KOG2352 Predicted spermine/spe 94.8 0.066 1.4E-06 53.8 6.6 98 257-359 51-162 (482)
454 PF03492 Methyltransf_7: SAM d 94.8 0.084 1.8E-06 51.6 7.2 78 10-88 16-120 (334)
455 KOG3201 Uncharacterized conser 94.8 0.025 5.5E-07 48.5 3.1 121 256-380 31-164 (201)
456 PRK00050 16S rRNA m(4)C1402 me 94.8 0.022 4.8E-07 54.4 3.0 77 247-327 14-99 (296)
457 TIGR03439 methyl_EasF probable 94.8 0.086 1.9E-06 51.0 7.1 97 257-357 79-196 (319)
458 COG5459 Predicted rRNA methyla 94.7 0.028 6E-07 54.0 3.5 99 257-359 116-226 (484)
459 COG4076 Predicted RNA methylas 94.7 0.029 6.2E-07 49.3 3.3 92 12-110 34-133 (252)
460 PLN02668 indole-3-acetate carb 94.7 0.16 3.4E-06 50.4 8.8 18 315-332 158-176 (386)
461 KOG1122 tRNA and rRNA cytosine 94.7 0.21 4.5E-06 49.4 9.4 112 8-121 239-380 (460)
462 PF06962 rRNA_methylase: Putat 94.7 0.26 5.7E-06 41.6 8.8 85 33-118 2-98 (140)
463 KOG4589 Cell division protein 94.5 0.17 3.8E-06 44.5 7.6 132 257-397 72-225 (232)
464 KOG3115 Methyltransferase-like 94.5 0.074 1.6E-06 47.4 5.4 29 12-40 62-94 (249)
465 KOG1661 Protein-L-isoaspartate 94.5 0.067 1.4E-06 48.0 5.0 89 258-359 86-194 (237)
466 PF13578 Methyltransf_24: Meth 94.4 0.014 3E-07 46.7 0.6 93 15-111 1-104 (106)
467 KOG2798 Putative trehalase [Ca 94.3 0.093 2E-06 49.8 5.9 69 73-142 258-334 (369)
468 COG1064 AdhP Zn-dependent alco 94.0 0.21 4.6E-06 48.5 7.9 93 9-114 165-261 (339)
469 PF00398 RrnaAD: Ribosomal RNA 94.0 0.11 2.4E-06 48.9 5.8 86 10-104 30-123 (262)
470 PF01564 Spermine_synth: Sperm 93.9 0.16 3.6E-06 47.3 6.8 127 254-382 76-220 (246)
471 KOG4589 Cell division protein 93.9 0.12 2.5E-06 45.6 5.3 94 9-113 68-185 (232)
472 PF04816 DUF633: Family of unk 93.8 0.26 5.7E-06 44.6 7.7 113 14-142 1-121 (205)
473 PF05958 tRNA_U5-meth_tr: tRNA 93.8 0.41 9E-06 47.1 9.7 110 257-381 199-332 (352)
474 KOG2187 tRNA uracil-5-methyltr 93.8 0.26 5.5E-06 50.0 8.1 100 10-113 383-491 (534)
475 COG1889 NOP1 Fibrillarin-like 93.6 0.43 9.3E-06 42.7 8.3 97 9-111 75-179 (231)
476 COG5459 Predicted rRNA methyla 93.6 0.31 6.6E-06 47.1 7.8 103 10-113 113-226 (484)
477 PRK13699 putative methylase; P 93.6 0.12 2.7E-06 47.5 5.2 65 312-376 13-90 (227)
478 COG1889 NOP1 Fibrillarin-like 93.5 1 2.2E-05 40.3 10.5 134 257-397 79-228 (231)
479 PF05971 Methyltransf_10: Prot 93.5 0.12 2.6E-06 49.4 5.0 78 11-88 103-191 (299)
480 COG2265 TrmA SAM-dependent met 93.4 0.45 9.7E-06 48.1 9.3 115 257-378 296-416 (432)
481 PF06859 Bin3: Bicoid-interact 93.2 0.065 1.4E-06 43.0 2.3 39 74-112 1-44 (110)
482 PF02384 N6_Mtase: N-6 DNA Met 92.7 0.48 1E-05 45.6 8.2 141 256-398 48-233 (311)
483 PF09445 Methyltransf_15: RNA 92.6 0.039 8.5E-07 47.9 0.4 88 256-348 1-112 (163)
484 PF04672 Methyltransf_19: S-ad 92.6 0.37 8.1E-06 45.2 6.8 101 11-113 69-191 (267)
485 COG4262 Predicted spermidine s 92.6 0.62 1.3E-05 45.3 8.3 100 10-112 289-407 (508)
486 COG3897 Predicted methyltransf 92.5 0.31 6.8E-06 43.3 5.8 109 243-359 69-180 (218)
487 TIGR00308 TRM1 tRNA(guanine-26 92.3 0.13 2.7E-06 51.1 3.6 90 257-357 47-146 (374)
488 PF06962 rRNA_methylase: Putat 92.3 0.36 7.8E-06 40.7 5.8 94 302-397 28-140 (140)
489 TIGR01444 fkbM_fam methyltrans 91.8 0.25 5.4E-06 41.5 4.4 35 13-47 1-39 (143)
490 TIGR02987 met_A_Alw26 type II 91.7 0.42 9.1E-06 49.7 6.8 43 255-297 32-80 (524)
491 KOG2793 Putative N2,N2-dimethy 91.7 0.93 2E-05 42.1 8.2 38 75-113 163-200 (248)
492 COG0144 Sun tRNA and rRNA cyto 91.6 0.57 1.2E-05 46.2 7.3 108 247-357 151-287 (355)
493 PF10672 Methyltrans_SAM: S-ad 91.6 0.19 4E-06 47.9 3.7 113 256-374 125-260 (286)
494 PF13679 Methyltransf_32: Meth 91.0 0.44 9.6E-06 40.2 5.1 22 253-274 24-45 (141)
495 TIGR01444 fkbM_fam methyltrans 90.2 0.3 6.6E-06 40.9 3.5 32 257-288 1-32 (143)
496 COG1064 AdhP Zn-dependent alco 89.8 0.73 1.6E-05 44.8 6.0 93 250-358 164-259 (339)
497 PF07757 AdoMet_MTase: Predict 89.8 0.25 5.4E-06 39.5 2.3 27 10-36 58-84 (112)
498 PF13578 Methyltransf_24: Meth 89.4 0.045 9.7E-07 43.7 -2.2 96 259-358 1-105 (106)
499 PF01861 DUF43: Protein of unk 89.2 12 0.00025 34.7 13.0 172 9-193 43-220 (243)
500 PF03602 Cons_hypoth95: Conser 89.2 0.25 5.5E-06 43.8 2.2 97 257-360 45-155 (183)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=5.9e-87 Score=649.32 Aligned_cols=387 Identities=57% Similarity=1.072 Sum_probs=364.5
Q ss_pred cCCCCCeEEEECCccchhHHHHccCCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 7 WIRLLRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 7 ~~~~~~~VLDiGcG~G~~~~~L~~~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
.++..+.+||+|||+|+|+.+|.+++|+.+.+++.+.++++.++|.++|++..+.......|||++++||+|+|+.+...
T Consensus 114 ~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~ 193 (506)
T PF03141_consen 114 WGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIP 193 (506)
T ss_pred cCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhccccccc
Confidence 44566789999999999999999999999999999999999999999999888777667899999999999999999999
Q ss_pred cccChHHHHHHHHHhcCCCeEEEEEeCCCC-CChHHHHHHHHHHHhhhhhcceeeeeccceEEEeecCCChhhhhhhhcC
Q 015704 87 WTRDDGILLLEVNRMLRAGGYFAWAAQPVY-KHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAG 165 (402)
Q Consensus 87 ~~~d~~~~l~e~~r~LkpgG~li~~~~~~~-~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 165 (402)
|..+...+|-++.|+|||||+|+++.+|.+ .+..++.+.|..++++++.+||+.+.+.+.+.+|+||..+.|+..++.+
T Consensus 194 W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~ 273 (506)
T PF03141_consen 194 WHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPG 273 (506)
T ss_pred chhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHheeeCCEEEEeccCCchhhhhccCC
Confidence 998878899999999999999999998888 6777899999999999999999999999999999999999999998888
Q ss_pred CCCCCCCCCCCCCCcccccccceeecCCCC---CCCCCCCCCCcccCCCCcccccccccccccchhhhHHhhHHHHHHHH
Q 015704 166 TIPPLCDPDDNPDNVWYVDLKACITRLPEN---GYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIE 242 (402)
Q Consensus 166 f~~~~~~~~~~~~~~~y~~~~~~l~~l~~~---ga~~~~~~Wp~rl~~~~~rl~~~~~~~~~~~~~~~~~~~~~w~~~~~ 242 (402)
-.|++|...++++..||.++++||+.++.. .++.++.+||+||..+|+|++...... .+.+.|.+|+++|+.+++
T Consensus 274 ~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~WP~RL~~~P~rl~~~~~~g--~~~e~F~~Dt~~Wk~~V~ 351 (506)
T PF03141_consen 274 KSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPKWPERLNAVPPRLSSGSIPG--ISPEEFKEDTKHWKKRVS 351 (506)
T ss_pred CCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCCChhhhccCchhhhcCCcCC--CCHHHHHHHHHHHHHHHH
Confidence 899999988999999999999999999875 466789999999999999999855332 356999999999999999
Q ss_pred HHHHhcc--cCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcCcccccccCCCCCCCCCCccc
Q 015704 243 SYVRALH--WKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYD 320 (402)
Q Consensus 243 ~y~~~~~--~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg~~~~~~~~~~~~~~~~~sfD 320 (402)
.|++.++ +.++++||||||++|+|||||+|.++ +||||||+|...++++.++++|||||++|+|||+|+|||+|||
T Consensus 352 ~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~--~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYD 429 (506)
T PF03141_consen 352 HYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDD--PVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYD 429 (506)
T ss_pred HHHHhhcccccccceeeeeeecccccHHHHHhccC--CceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchh
Confidence 9998877 78999999999999999999999998 4799999999999999999999999999999999999999999
Q ss_pred EEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEe
Q 015704 321 LLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 397 (402)
Q Consensus 321 ~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 397 (402)
+||++++|+++.++|+++++|.||||||||||++||||..+++.++++++++|||++.++++|+++.++||+|+|+|
T Consensus 430 LlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 430 LLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred heehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.96 E-value=1.4e-29 Score=247.76 Aligned_cols=195 Identities=17% Similarity=0.336 Sum_probs=154.3
Q ss_pred ccceeecCCCCCCCCCCCCCCcccCC------CCcccccccccccccchhhhHHhhHH---------HHHHHHHHHHhc-
Q 015704 185 LKACITRLPENGYGANVSLWPERLRT------SPDRLQSIQLDAFIARKELFKAESKY---------WNEIIESYVRAL- 248 (402)
Q Consensus 185 ~~~~l~~l~~~ga~~~~~~Wp~rl~~------~~~rl~~~~~~~~~~~~~~~~~~~~~---------w~~~~~~y~~~~- 248 (402)
...|+-+.+.... ...+||++++. +++++...+..+ +|++.++++ |...++.|.+.+
T Consensus 34 ~~~CLVp~P~gYk--~P~~WP~SRd~iW~~Nvph~~L~~~K~~q-----nWv~~~gd~~~FPgggt~F~~Ga~~Yid~i~ 106 (506)
T PF03141_consen 34 RLRCLVPPPKGYK--TPIPWPKSRDYIWYANVPHTKLAEEKADQ-----NWVRVEGDKFRFPGGGTMFPHGADHYIDQIA 106 (506)
T ss_pred CCccccCCCccCC--CCCCCCcccceeeecccCchHHhhhcccc-----cceeecCCEEEeCCCCccccCCHHHHHHHHH
Confidence 3456666553222 46899999864 888888888776 787766665 445667776444
Q ss_pred ---cc--CCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCCC-CCChhhHHhcCcccccccC-CCCCCCCC-Cccc
Q 015704 249 ---HW--KKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGLIGVMHDW-CEPFDTYP-RTYD 320 (402)
Q Consensus 249 ---~~--~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~-~~~~~~~~~rg~~~~~~~~-~~~~~~~~-~sfD 320 (402)
+. ..+.+|.+||+|||+|+||++|.++| |.+|++.|.+. ++++|+|.|||+..++... ... .||| ++||
T Consensus 107 ~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~--V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~r-LPfp~~~fD 183 (506)
T PF03141_consen 107 EMIPLIKWGGGIRTALDVGCGVASFGAYLLERN--VTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQR-LPFPSNAFD 183 (506)
T ss_pred HHhhccccCCceEEEEeccceeehhHHHHhhCC--ceEEEcccccCCchhhhhhhhcCcchhhhhhcccc-ccCCccchh
Confidence 44 56899999999999999999999995 69999999984 7899999999995554433 233 5677 9999
Q ss_pred EEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC----------hhhHHHHHHHHHhcCceEEEeecCCCCCCce
Q 015704 321 LLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS----------IDVMDELQEIGKAMGWHVTLRETAEGPHASY 390 (402)
Q Consensus 321 ~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~----------~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 390 (402)
+|||+..+..+.... ..+|.|++|||||||||++|.+ .++++.|+.++++|||+...++.+
T Consensus 184 mvHcsrc~i~W~~~~--g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~~~~------- 254 (506)
T PF03141_consen 184 MVHCSRCLIPWHPND--GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAEKGD------- 254 (506)
T ss_pred hhhcccccccchhcc--cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHheeeCC-------
Confidence 999999888776443 4799999999999999999954 367899999999999999988875
Q ss_pred EEEEEEecC
Q 015704 391 RILTADKRL 399 (402)
Q Consensus 391 ~~l~~~k~~ 399 (402)
+.+-||+.
T Consensus 255 -~aIwqKp~ 262 (506)
T PF03141_consen 255 -TAIWQKPT 262 (506)
T ss_pred -EEEEeccC
Confidence 78888864
No 3
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.92 E-value=6.9e-25 Score=223.96 Aligned_cols=310 Identities=18% Similarity=0.222 Sum_probs=163.5
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEecccc--CCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR--RLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~--~lp~~~~sfDlI~s~~~~~ 85 (402)
++.+|||+|||+|.++..+++. .++++|+++.++..+.. .........+...|+. .+|+++++||+|+|+.+++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~--~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES--INGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLM 114 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH--HhccCCceEEEEecccccccCCCCCCEEEEehhhhHH
Confidence 4569999999999999998875 78999999877754321 1111112345555653 4678889999999988766
Q ss_pred ccccC-hHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHHHHHhhhhhcceeeeeccceEEEeecCCChhhhhhhhc
Q 015704 86 NWTRD-DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREA 164 (402)
Q Consensus 86 ~~~~d-~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 164 (402)
|+.++ ...+++++.++|||||++++........ ..+.. ......|.. ......++.++
T Consensus 115 ~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~-~~~~~-------------------~~~~~~~~~-~~~~~~~f~~~ 173 (475)
T PLN02336 115 YLSDKEVENLAERMVKWLKVGGYIFFRESCFHQS-GDSKR-------------------KNNPTHYRE-PRFYTKVFKEC 173 (475)
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC-Ccccc-------------------cCCCCeecC-hHHHHHHHHHh
Confidence 66533 4789999999999999999974211110 00000 000011111 11222233344
Q ss_pred CCCCCCCCCCCCCCCcccccccceeecCCCCCCCCCCCCCCcc-cCCC-Ccccccccc-ccc----ccchhhhHHhhHHH
Q 015704 165 GTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGANVSLWPER-LRTS-PDRLQSIQL-DAF----IARKELFKAESKYW 237 (402)
Q Consensus 165 Gf~~~~~~~~~~~~~~~y~~~~~~l~~l~~~ga~~~~~~Wp~r-l~~~-~~rl~~~~~-~~~----~~~~~~~~~~~~~w 237 (402)
||...... .......+|..+....- + ..+-++..++.+ ++.. ..++...-. -+| +...+.|-...-.+
T Consensus 174 ~~~~~~~~-~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~f~g~~~~v 248 (475)
T PLN02336 174 HTRDEDGN-SFELSLVGCKCIGAYVK--N--KKNQNQICWLWQKVSSTNDKGFQRFLDNVQYKSSGILRYERVFGEGFVS 248 (475)
T ss_pred eeccCCCC-EEEEEEEEeechhhhhh--c--cCCcceEEEEEEeecCCcchhHHHHhhhhccccccHHHHHHHhCCCCCC
Confidence 44211000 00000011111100000 0 000011111110 0000 000000000 000 00011111111111
Q ss_pred HHHHH---HHHHhcccCCCCcceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc--Cc---cccccc
Q 015704 238 NEIIE---SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR--GL---IGVMHD 307 (402)
Q Consensus 238 ~~~~~---~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r--g~---~~~~~~ 307 (402)
...+. ...+.+.. +.-.+|||+|||+|.++..|++. ++ .|+++| ++.++..+.++ ++ +...+.
T Consensus 249 ~~~v~~te~l~~~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~-----~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~ 321 (475)
T PLN02336 249 TGGLETTKEFVDKLDL--KPGQKVLDVGCGIGGGDFYMAENFDV-----HVVGIDLSVNMISFALERAIGRKCSVEFEVA 321 (475)
T ss_pred CchHHHHHHHHHhcCC--CCCCEEEEEeccCCHHHHHHHHhcCC-----EEEEEECCHHHHHHHHHHhhcCCCceEEEEc
Confidence 11111 12222222 23346999999999999999876 33 566666 56777777554 22 333332
Q ss_pred CCCCCCCCC-CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 308 WCEPFDTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 308 ~~~~~~~~~-~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
-... .++| ++||+|+|..++.|+.+ ++.+|.|+.|+|||||.+++++
T Consensus 322 d~~~-~~~~~~~fD~I~s~~~l~h~~d---~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 322 DCTK-KTYPDNSFDVIYSRDTILHIQD---KPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred Cccc-CCCCCCCEEEEEECCcccccCC---HHHHHHHHHHHcCCCeEEEEEE
Confidence 2222 3466 79999999999999875 5899999999999999999986
No 4
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.71 E-value=2.3e-17 Score=154.59 Aligned_cols=165 Identities=20% Similarity=0.288 Sum_probs=122.5
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
++.+|||+|||+|.++..+... .++++|+++.++ +.++++.....+...|++.+|+++++||+|+|+.+ +||
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l-----~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~-l~~ 115 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPML-----AQARQKDAADHYLAGDIESLPLATATFDLAWSNLA-VQW 115 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHH-----HHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECch-hhh
Confidence 4679999999999998888765 788999887655 44444433334667788889999899999998765 788
Q ss_pred ccChHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHHHHHhhhhhcceeeeeccceEEEeecC-CChhhhhhhhcCC
Q 015704 88 TRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKP-TNNSCYLNREAGT 166 (402)
Q Consensus 88 ~~d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~aGf 166 (402)
..++..++.++.++|+|||.++++++ ...+..++.+.|..+..... ..+.. ..+...++++.++
T Consensus 116 ~~d~~~~l~~~~~~Lk~gG~l~~~~~-~~~~~~el~~~~~~~~~~~~--------------~~~~~~~~~l~~~l~~~~~ 180 (251)
T PRK10258 116 CGNLSTALRELYRVVRPGGVVAFTTL-VQGSLPELHQAWQAVDERPH--------------ANRFLPPDAIEQALNGWRY 180 (251)
T ss_pred cCCHHHHHHHHHHHcCCCeEEEEEeC-CCCchHHHHHHHHHhccCCc--------------cccCCCHHHHHHHHHhCCc
Confidence 88999999999999999999999974 56778888888865532111 11111 1223345555555
Q ss_pred CCCCCCCCCCCCCcccccccceeecCCCCCCCCC
Q 015704 167 IPPLCDPDDNPDNVWYVDLKACITRLPENGYGAN 200 (402)
Q Consensus 167 ~~~~~~~~~~~~~~~y~~~~~~l~~l~~~ga~~~ 200 (402)
. .+.+..+.+|+++.++++++|.+|+++.
T Consensus 181 ~-----~~~~~~~~~f~~~~~~l~~lk~~G~~~~ 209 (251)
T PRK10258 181 Q-----HHIQPITLWFDDALSAMRSLKGIGATHL 209 (251)
T ss_pred e-----eeeeEEEEECCCHHHHHHHHHHhCCCCC
Confidence 3 2456778899999999999999988764
No 5
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.65 E-value=9.8e-15 Score=149.31 Aligned_cols=101 Identities=18% Similarity=0.201 Sum_probs=68.1
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
++.+|||+|||+|.++..++.. .++++|+++.++..+. +.+...+.. ..+...|... +++.++||+|+||..
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~-~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPP 215 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAK-SNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPP 215 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHH-HHHHHcCCccceeeeecchhh-hCcCCCccEEEECCC
Confidence 3468999999999988877642 7999999988776665 334444442 2344445322 234568999999764
Q ss_pred cccccc---------------------C----hHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTR---------------------D----DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~---------------------d----~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.+.... + ...+++++.++|+|||.+++..
T Consensus 216 Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 216 YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 332111 1 1246778889999999999974
No 6
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=7.8e-16 Score=140.95 Aligned_cols=102 Identities=21% Similarity=0.312 Sum_probs=84.8
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
++.+|||+|||||.++..+++. .++++|+++.|+..+. +.+.+.+.. ..+..+|++.|||++++||+|.++..
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~-~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg- 128 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAR-EKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG- 128 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHH-HHhhccCccceEEEEechhhCCCCCCccCEEEeeeh-
Confidence 6889999999999999888865 7999999999887766 333333332 45778899999999999999999887
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++...|.+++|+|++|+|||||.+++..+
T Consensus 129 lrnv~d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 129 LRNVTDIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred hhcCCCHHHHHHHHHHhhcCCeEEEEEEc
Confidence 45555999999999999999999888754
No 7
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.64 E-value=8.7e-16 Score=141.72 Aligned_cols=104 Identities=25% Similarity=0.365 Sum_probs=74.8
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||||.++..++++ .|+++|+++.|+..+..+.......+..+.++|++++|+++++||.|+|+..
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fg 125 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFG 125 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhh
Confidence 46779999999999999888764 6899999999987776444432223456788899999999999999999887
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+.++. |+.++++|++|+|||||.+++..+
T Consensus 126 lrn~~-d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 126 LRNFP-DRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp GGG-S-SHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHhhC-CHHHHHHHHHHHcCCCeEEEEeec
Confidence 55554 899999999999999999998754
No 8
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.62 E-value=3.8e-16 Score=123.03 Aligned_cols=89 Identities=25% Similarity=0.424 Sum_probs=68.8
Q ss_pred EeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhcCc---ccccccCCCCCCCCC-CcccEEEEcccccccc
Q 015704 259 LDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRGL---IGVMHDWCEPFDTYP-RTYDLLHAAGLFSVES 332 (402)
Q Consensus 259 LD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~rg~---~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~ 332 (402)
||+|||+|.++..|+++ +. +|+++| ++.+++.+.++.. +...+...+.+ +|| +|||+|++.++++|+.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~-----~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l-~~~~~sfD~v~~~~~~~~~~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGA-----SVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDL-PFPDNSFDVVFSNSVLHHLE 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTC-----EEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSS-SS-TT-EEEEEEESHGGGSS
T ss_pred CEecCcCCHHHHHHHhccCC-----EEEEEeCCHHHHHHHHhcccccCchheeehHHhC-ccccccccccccccceeecc
Confidence 89999999999999999 65 666666 4567777777644 22444445665 567 8999999999999994
Q ss_pred ccCCHHHHHHHhhhhccCCcEEEE
Q 015704 333 KRCNMSTIMLEMDRMLRPGGHVYI 356 (402)
Q Consensus 333 ~~~~~~~~l~e~~RvLrpgG~~~~ 356 (402)
++..++.|+.|+|||||+++|
T Consensus 75 ---~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 ---DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ---HHHHHHHHHHHHEEEEEEEEE
T ss_pred ---CHHHHHHHHHHHcCcCeEEeC
Confidence 568999999999999999986
No 9
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.59 E-value=4.8e-16 Score=137.51 Aligned_cols=180 Identities=15% Similarity=0.066 Sum_probs=132.8
Q ss_pred CCCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 8 IRLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 8 ~~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
.+....++|||||-|.+..++... .++-+|.+..|+..+ +.++..++.......|-+.++|.+++||+|+++ ..
T Consensus 70 kk~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~--~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisS-ls 146 (325)
T KOG2940|consen 70 KKSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSC--RDAQDPSIETSYFVGDEEFLDFKENSVDLIISS-LS 146 (325)
T ss_pred hhhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHh--hccCCCceEEEEEecchhcccccccchhhhhhh-hh
Confidence 456678999999999999999877 566677776655322 222223334446677889999999999999976 45
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHHHHHhhhhhcceeeeeccceEEEeecCCC-hhhhhhhh
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTN-NSCYLNRE 163 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ 163 (402)
+||.+|++..+.++...|||+|.|+-+. .+.+++.|++-+..-.+.. +.-+ -..++.++... +...++.+
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~Fiasm-lggdTLyELR~slqLAelE-R~GG-------iSphiSPf~qvrDiG~LL~r 217 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIASM-LGGDTLYELRCSLQLAELE-REGG-------ISPHISPFTQVRDIGNLLTR 217 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchhHH-hccccHHHHHHHhhHHHHH-hccC-------CCCCcChhhhhhhhhhHHhh
Confidence 9999999999999999999999999985 4788999998775322211 1111 11233333333 35569999
Q ss_pred cCCCCCCCCCCCCCCCcccccccceeecCCCCCCCCCC
Q 015704 164 AGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGANV 201 (402)
Q Consensus 164 aGf~~~~~~~~~~~~~~~y~~~~~~l~~l~~~ga~~~~ 201 (402)
|||. +...+.+...+-|+.+.++|.+|+++|.++..
T Consensus 218 AGF~--m~tvDtDEi~v~Yp~mfeLm~dLq~MgEsn~~ 253 (325)
T KOG2940|consen 218 AGFS--MLTVDTDEIVVGYPRMFELMEDLQGMGESNAA 253 (325)
T ss_pred cCcc--cceecccceeecCchHHHHHHHHHhhcccchh
Confidence 9995 56667888889999999999999988877643
No 10
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.57 E-value=3e-15 Score=117.84 Aligned_cols=90 Identities=27% Similarity=0.454 Sum_probs=69.4
Q ss_pred EEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecCccccccc
Q 015704 15 MDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR 89 (402)
Q Consensus 15 LDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~~~ 89 (402)
||+|||+|..+..+++. .++++|+++.++ +.++++.. ...+...+.+.+|+++++||+|+++.+++|+ +
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~-----~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEML-----EQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-E 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHH-----HHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-S
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHH-----HHHHhcccccCchheeehHHhCccccccccccccccceeec-c
Confidence 89999999999888876 688888887655 44444322 2237777899999999999999998876665 6
Q ss_pred ChHHHHHHHHHhcCCCeEEEE
Q 015704 90 DDGILLLEVNRMLRAGGYFAW 110 (402)
Q Consensus 90 d~~~~l~e~~r~LkpgG~li~ 110 (402)
++..+++++.|+|||||+++|
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 889999999999999999986
No 11
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.55 E-value=5.1e-15 Score=135.58 Aligned_cols=95 Identities=22% Similarity=0.335 Sum_probs=82.0
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc------ccccccCCCCCCCCC-CcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL------IGVMHDWCEPFDTYP-RTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~------~~~~~~~~~~~~~~~-~sfD~v~~~~~~ 328 (402)
+|||+|||+|-++..+++.. -...|+.+| +++||..+.+|-. +..++...|.+| || +|||+|.++..|
T Consensus 54 ~vLDva~GTGd~a~~~~k~~---g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-f~D~sFD~vt~~fgl 129 (238)
T COG2226 54 KVLDVACGTGDMALLLAKSV---GTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-FPDNSFDAVTISFGL 129 (238)
T ss_pred EEEEecCCccHHHHHHHHhc---CCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-CCCCccCEEEeeehh
Confidence 49999999999999999884 145788888 7899999998854 445677778877 88 899999999999
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
.++.| ++.+|+||.|||||||.+++-|
T Consensus 130 rnv~d---~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 130 RNVTD---IDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred hcCCC---HHHHHHHHHHhhcCCeEEEEEE
Confidence 99774 6999999999999999999886
No 12
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.51 E-value=1.6e-14 Score=130.25 Aligned_cols=103 Identities=19% Similarity=0.271 Sum_probs=86.9
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
-++.+|||+|||.|.++..+++. .|+++|+++..+..++ ..+.+.+....+....++++....++||+|+|..+++|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAK-LHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHH-HhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 36789999999999999999987 8999999998887776 55666666655555566777666689999999999888
Q ss_pred cccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 87 WTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 87 ~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.. |+..+++.+.+++||||.+++||.
T Consensus 137 v~-dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 137 VP-DPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred cC-CHHHHHHHHHHHcCCCcEEEEecc
Confidence 76 999999999999999999999984
No 13
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.50 E-value=1.2e-13 Score=130.11 Aligned_cols=104 Identities=17% Similarity=0.177 Sum_probs=81.8
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHH--HcCC-CcEEEeccccCCCCCCCCeeEEEec
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFAL--ERGA-PAMVAAFATRRLPYPSQAFDLIHCS 81 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~--~~~~-~~~~~~~d~~~lp~~~~sfDlI~s~ 81 (402)
++.+|||+|||+|.++..+++. .++++|+++.|+..+..+... .... ...+...|++.+|+++++||+|+++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 5679999999999988877643 689999999888666532211 1112 3446778889999999999999998
Q ss_pred CcccccccChHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 82 RCRINWTRDDGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 82 ~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
.+++++ +++..++++++|+|||||.+++..+.
T Consensus 153 ~~l~~~-~d~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 153 YGLRNV-VDRLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred cccccC-CCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 775554 58999999999999999999998653
No 14
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.48 E-value=1.6e-13 Score=132.15 Aligned_cols=102 Identities=13% Similarity=0.099 Sum_probs=81.6
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
++.+|||||||+|.++..+++. .|+++|+++.++..+... +...+. ...+...+++++++++++||+|+|..+++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~-~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLH-ADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 4569999999999999888765 799999998877655522 222221 34466677788888888999999998866
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+. ++..+++++.++|||||.+++++.
T Consensus 210 Hv~-d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 210 HVA-NPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred hcC-CHHHHHHHHHHHcCCCcEEEEEEC
Confidence 665 899999999999999999999974
No 15
>PLN02244 tocopherol O-methyltransferase
Probab=99.47 E-value=2.4e-13 Score=132.83 Aligned_cols=103 Identities=19% Similarity=0.374 Sum_probs=84.2
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..+++. .|+++|+++.++..+. +.+.+.+. ...+...|...+|+++++||+|+|..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~-~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARAN-ALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHH-HHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 35679999999999999888764 7899999988776554 34444444 245677788889999999999999888
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++|+. +...++++++|+|||||.+++.+.
T Consensus 196 ~~h~~-d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 196 GEHMP-DKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred hhccC-CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 77765 889999999999999999999863
No 16
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.46 E-value=7.4e-14 Score=131.19 Aligned_cols=95 Identities=19% Similarity=0.233 Sum_probs=73.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~~~ 326 (402)
.+|||+|||+|.++..|+++|. +|+.+| ++.+++.+.++ |+ +..++...+.+++++ ++||+|+|+.
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~-----~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGH-----QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 4799999999999999999987 566666 56777666554 43 233333333444455 8999999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+|+|+.+ +..+|.++.|+|||||++++..
T Consensus 121 vl~~~~~---~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 121 VLEWVAD---PKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred HHHhhCC---HHHHHHHHHHHcCCCeEEEEEE
Confidence 9999874 5899999999999999999864
No 17
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.45 E-value=5.4e-14 Score=129.82 Aligned_cols=96 Identities=26% Similarity=0.344 Sum_probs=70.2
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCC-CcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP-RTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~-~sfD~v~~~~~~ 328 (402)
.|||+|||+|-++..|+++.. ....|+++| +++|++.+.+| +. +..+...++.+| || +|||+|.|+..|
T Consensus 50 ~vLDv~~GtG~~~~~l~~~~~--~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp-~~d~sfD~v~~~fgl 126 (233)
T PF01209_consen 50 RVLDVACGTGDVTRELARRVG--PNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP-FPDNSFDAVTCSFGL 126 (233)
T ss_dssp EEEEET-TTSHHHHHHGGGSS-----EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB---S-TT-EEEEEEES-G
T ss_pred EEEEeCCChHHHHHHHHHHCC--CccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc-CCCCceeEEEHHhhH
Confidence 599999999999999987621 334788888 78999988876 22 455556667754 77 899999999999
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
.++++ +..+|.||.|||||||.+++-|
T Consensus 127 rn~~d---~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 127 RNFPD---RERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp GG-SS---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhCC---HHHHHHHHHHHcCCCeEEEEee
Confidence 88775 6899999999999999999986
No 18
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.45 E-value=4.3e-13 Score=129.87 Aligned_cols=103 Identities=19% Similarity=0.175 Sum_probs=78.5
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHH-cCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALE-RGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~-~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
..+.+|||||||+|.++..++.. .|+|+|.++.++.......... ......+...+++.+|+ +++||+|+|..++
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 35689999999999999888765 5999999987664332111111 12234566678888888 7899999998876
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+|. .++..+++++++.|+|||.+++.+.
T Consensus 200 ~H~-~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 200 YHR-RSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred hcc-CCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 665 5899999999999999999999863
No 19
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.45 E-value=6.1e-14 Score=132.24 Aligned_cols=125 Identities=19% Similarity=0.229 Sum_probs=89.9
Q ss_pred hhhHHhhHHHHHHHHHHHHhccc---CC---------------CCcceEEeccccchHHHHHHhhc-CCCceEEEeccCC
Q 015704 228 ELFKAESKYWNEIIESYVRALHW---KK---------------MKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS 288 (402)
Q Consensus 228 ~~~~~~~~~w~~~~~~y~~~~~~---~~---------------~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~ 288 (402)
..|.++++|-...+..|...++. .+ ..-..|||+|||+|..+..|+.. ++ .|+.+|
T Consensus 8 ~~~~~~~~y~~~~~~~~e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~-----~v~giD 82 (263)
T PTZ00098 8 ITYLENNQYSDEGIKAYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGA-----HVHGVD 82 (263)
T ss_pred hhhhhccccccccchhHHHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCC-----EEEEEE
Confidence 56777777777777777776651 11 12245999999999999999765 33 566666
Q ss_pred -CCCChhhHHhcCc----ccccccCCCCCCCCC-CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 289 -GFNTLPVIYDRGL----IGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 289 -~~~~~~~~~~rg~----~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
++++++.+.++.. +.....-.+. .+|| ++||+|++..++.|+.. .++..+|.|+.|+|||||+++++|.
T Consensus 83 ~s~~~~~~a~~~~~~~~~i~~~~~D~~~-~~~~~~~FD~V~s~~~l~h~~~-~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 83 ICEKMVNIAKLRNSDKNKIEFEANDILK-KDFPENTFDMIYSRDAILHLSY-ADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CCHHHHHHHHHHcCcCCceEEEECCccc-CCCCCCCeEEEEEhhhHHhCCH-HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 5677777776532 3333322222 3467 79999999999999762 3568999999999999999999974
No 20
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.44 E-value=7.3e-14 Score=134.57 Aligned_cols=96 Identities=13% Similarity=0.143 Sum_probs=75.7
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC----c---ccccccCCCCCCCCCCcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----L---IGVMHDWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg----~---~~~~~~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
+|||+|||.|.++..|+..|+ +|+++| ++.+++.+..+. + +..++...+.++..+++||+|.|..||
T Consensus 134 ~ILDIGCG~G~~s~~La~~g~-----~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLARMGA-----TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred EEEEeeCCCCHHHHHHHHcCC-----EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 699999999999999999886 677777 567777776542 1 334444445544323799999999999
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
+|+.+ +..+|.|+.|+|||||.+++++.+
T Consensus 209 eHv~d---~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 209 EHVAN---PAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred HhcCC---HHHHHHHHHHHcCCCcEEEEEECC
Confidence 99885 689999999999999999999643
No 21
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.43 E-value=1.3e-13 Score=124.33 Aligned_cols=94 Identities=16% Similarity=0.262 Sum_probs=75.9
Q ss_pred EEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-----ccccccCCCCCCCCC-CcccEEEEcccccc
Q 015704 258 VLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-----IGVMHDWCEPFDTYP-RTYDLLHAAGLFSV 330 (402)
Q Consensus 258 vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-----~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~ 330 (402)
|||+|||-|.++..||..|+ +|+++| ++.+++.|..+.. +.......|++. .. .+||+|.|..|++|
T Consensus 63 vLDvGCGgG~Lse~mAr~Ga-----~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~-~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 63 VLDVGCGGGILSEPLARLGA-----SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLA-SAGGQFDVVTCMEVLEH 136 (243)
T ss_pred EEEecCCccHhhHHHHHCCC-----eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHH-hcCCCccEEEEhhHHHc
Confidence 99999999999999999998 889988 6778877775544 222223333333 23 69999999999999
Q ss_pred ccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 331 ESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 331 ~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
+++ +..++++..+.+||||.+++|..+
T Consensus 137 v~d---p~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 137 VPD---PESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred cCC---HHHHHHHHHHHcCCCcEEEEeccc
Confidence 885 689999999999999999999754
No 22
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.41 E-value=4.6e-13 Score=125.21 Aligned_cols=102 Identities=15% Similarity=0.158 Sum_probs=76.7
Q ss_pred CCCCCeEEEECCccchhHHHHcc------CCceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEE
Q 015704 8 IRLLRVVMDAGCGVASFGAYLLP------RNVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIH 79 (402)
Q Consensus 8 ~~~~~~VLDiGcG~G~~~~~L~~------~~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~ 79 (402)
..++.+|||+|||+|..+..+++ ..++++|+++.++..+...... .+. ...+...++..+|++ .+|+|+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~-~~~~~~v~~~~~d~~~~~~~--~~D~vv 130 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA-YKAPTPVDVIEGDIRDIAIE--NASMVV 130 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCCeEEEeCChhhCCCC--CCCEEe
Confidence 34667999999999998876654 2799999999888777644433 232 344666777777764 589999
Q ss_pred ecCcccccccC-hHHHHHHHHHhcCCCeEEEEEe
Q 015704 80 CSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 80 s~~~~~~~~~d-~~~~l~e~~r~LkpgG~li~~~ 112 (402)
++.+++++..+ ...++++++++|||||.++++.
T Consensus 131 ~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 131 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 88775555432 3689999999999999999985
No 23
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.41 E-value=7.6e-13 Score=124.50 Aligned_cols=97 Identities=25% Similarity=0.358 Sum_probs=75.0
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++ +.++++.....+...|+..++ ++++||+|+|+.+
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i-----~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~- 102 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAML-----AEARSRLPDCQFVEADIASWQ-PPQALDLIFANAS- 102 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHH-----HHHHHhCCCCeEEECchhccC-CCCCccEEEEccC-
Confidence 35679999999999998888753 689999987665 444444333445666766554 4469999999876
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+||..+...+++++.++|||||.+++..
T Consensus 103 l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 103 LQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred hhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 6667788999999999999999999985
No 24
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.41 E-value=1.2e-13 Score=119.83 Aligned_cols=94 Identities=26% Similarity=0.426 Sum_probs=70.0
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCCCCC-CcccEEEEccccccc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHAAGLFSVE 331 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~ 331 (402)
.-.+|||+|||+|.++..|++.|+ .++.+| ++.++.. +......+. ...+.+| ++||+|+|.++|+|+
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~-----~~~g~D~~~~~~~~---~~~~~~~~~--~~~~~~~~~~fD~i~~~~~l~~~ 91 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGF-----EVTGVDISPQMIEK---RNVVFDNFD--AQDPPFPDGSFDLIICNDVLEHL 91 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTS-----EEEEEESSHHHHHH---TTSEEEEEE--CHTHHCHSSSEEEEEEESSGGGS
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC-----EEEEEECCHHHHhh---hhhhhhhhh--hhhhhccccchhhHhhHHHHhhc
Confidence 344699999999999999999987 555555 3333333 222222221 1123345 899999999999999
Q ss_pred cccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 332 SKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 332 ~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
++ +..+|.+|.|+|||||++++++..
T Consensus 92 ~d---~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 92 PD---PEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp SH---HHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred cc---HHHHHHHHHHhcCCCCEEEEEEcC
Confidence 85 689999999999999999999875
No 25
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.40 E-value=5.9e-13 Score=125.38 Aligned_cols=96 Identities=25% Similarity=0.263 Sum_probs=75.0
Q ss_pred ceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhcC-------c--ccccccCCCCCCCCC-CcccEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRG-------L--IGVMHDWCEPFDTYP-RTYDLLH 323 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~rg-------~--~~~~~~~~~~~~~~~-~sfD~v~ 323 (402)
.+|||+|||+|.++..|+++ +. ..+|+++| +++|++.+.+|. . +..+....+.+ +|| ++||+|+
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~---~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p~~~~sfD~V~ 150 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGS---DGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-PFDDCYFDAIT 150 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-CCCCCCEeEEE
Confidence 35999999999999999876 31 12677877 678998887652 1 33344444554 477 7999999
Q ss_pred EccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 324 AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
++.+++|+++ +..+|.|+.|+|||||++++.|
T Consensus 151 ~~~~l~~~~d---~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 151 MGYGLRNVVD---RLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred EecccccCCC---HHHHHHHHHHHcCcCcEEEEEE
Confidence 9999999874 6899999999999999999986
No 26
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.40 E-value=1.5e-12 Score=117.50 Aligned_cols=104 Identities=22% Similarity=0.213 Sum_probs=84.7
Q ss_pred CCCeEEEECCccchhHHHHccC----------CceEEeCCccchHHHHHHHHHHcCCC----cEEEeccccCCCCCCCCe
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----------NVITMSIAPKDVHENQIQFALERGAP----AMVAAFATRRLPYPSQAF 75 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----------~v~~vdi~~~~~~~a~~~~a~~~~~~----~~~~~~d~~~lp~~~~sf 75 (402)
.+.++||++||||.++..+.+. +|+..|+++.++..+. +.+.++++. ..+..+|+++|||++++|
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgk-qRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGK-QRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHH-HHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 5579999999999888766542 6899999999998776 444444432 357778999999999999
Q ss_pred eEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEeCCC
Q 015704 76 DLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPV 115 (402)
Q Consensus 76 DlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~~ 115 (402)
|.....+..-.+. ++++.++|++|+|||||.|.+-.++-
T Consensus 179 D~yTiafGIRN~t-h~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 179 DAYTIAFGIRNVT-HIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred eeEEEecceecCC-CHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 9999887766665 99999999999999999999876543
No 27
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.40 E-value=1.1e-12 Score=106.92 Aligned_cols=102 Identities=21% Similarity=0.268 Sum_probs=75.1
Q ss_pred CCCeEEEECCccchhHHHHcc--C--CceEEeCCccchHHHHHHHHHHcC-CCcEEEeccc-cCCCCCCCCeeEEEecC-
Q 015704 10 LLRVVMDAGCGVASFGAYLLP--R--NVITMSIAPKDVHENQIQFALERG-APAMVAAFAT-RRLPYPSQAFDLIHCSR- 82 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~--~--~v~~vdi~~~~~~~a~~~~a~~~~-~~~~~~~~d~-~~lp~~~~sfDlI~s~~- 82 (402)
++.+|||+|||+|.++..+++ . +++++|+++.++..++........ ....+...|+ ..... .+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 467999999999999988887 3 899999999888777644423222 2344666676 22332 35699999987
Q ss_pred cccccc--cChHHHHHHHHHhcCCCeEEEEEe
Q 015704 83 CRINWT--RDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 83 ~~~~~~--~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
...++. ++...+++++.+.|+|||++++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 333232 345789999999999999999985
No 28
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.39 E-value=5.6e-13 Score=123.37 Aligned_cols=162 Identities=19% Similarity=0.272 Sum_probs=109.2
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCC-CcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
.+.+|||+|||+|.++..+++. .++++|+++.++..+ +++.. ...+...|....++++++||+|+++.+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~-----~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~- 107 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQA-----KTKLSENVQFICGDAEKLPLEDSSFDLIVSNLA- 107 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHH-----HHhcCCCCeEEecchhhCCCCCCceeEEEEhhh-
Confidence 3468999999999998888764 568888887655333 32221 234566788888888899999999876
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHHHHHhhhhhcceeeeeccceEEEeecCCChhhhhhhhc
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREA 164 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 164 (402)
+|+..++..++.++.++|+|||.++++++ ......++...+... .. .+ .+......++..+
T Consensus 108 l~~~~~~~~~l~~~~~~L~~~G~l~~~~~-~~~~~~~~~~~~~~~-----~~-----------~~--~~~~~~~~~l~~~ 168 (240)
T TIGR02072 108 LQWCDDLSQALSELARVLKPGGLLAFSTF-GPGTLHELRQSFGQH-----GL-----------RY--LSLDELKALLKNS 168 (240)
T ss_pred hhhccCHHHHHHHHHHHcCCCcEEEEEeC-CccCHHHHHHHHHHh-----cc-----------CC--CCHHHHHHHHHHh
Confidence 56666899999999999999999999963 445555444443210 00 00 0112334455555
Q ss_pred CCCCCCCCCCCCCCCcccccccceeecCCCCCCCC
Q 015704 165 GTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGA 199 (402)
Q Consensus 165 Gf~~~~~~~~~~~~~~~y~~~~~~l~~l~~~ga~~ 199 (402)
|.. ..........+|.+...+++.++.+|+++
T Consensus 169 -f~~--~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 200 (240)
T TIGR02072 169 -FEL--LTLEEELITLSFDDPLDVLRHLKKTGANG 200 (240)
T ss_pred -cCC--cEEEEEEEEEeCCCHHHHHHHHHHhccCc
Confidence 643 22234455667888888999888777654
No 29
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.39 E-value=1.9e-12 Score=111.93 Aligned_cols=102 Identities=21% Similarity=0.313 Sum_probs=81.5
Q ss_pred CCCCeEEEECCccchhHHHHcc-----CCceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCC--CCCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP--YPSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~-----~~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp--~~~~sfDlI~s 80 (402)
.++.+|||+|||+|.++..+++ ..++++|+++.++..+. +.+++.+.+ ..+...|+.+++ ++ +.||+|++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~-~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~ 79 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAK-KRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIIS 79 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHH-HHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhh-cccccccccccceEEeehhccccccC-CCeeEEEE
Confidence 3567999999999999988883 27999999998887666 444555555 457778888877 66 89999999
Q ss_pred cCcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 81 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+.++ ++..++..+++++.+.|++||.+++...
T Consensus 80 ~~~l-~~~~~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 80 NGVL-HHFPDPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp ESTG-GGTSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCch-hhccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 8775 5555888999999999999999999863
No 30
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.39 E-value=1.6e-12 Score=121.87 Aligned_cols=96 Identities=24% Similarity=0.256 Sum_probs=75.0
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-ccccccCCCCCCCCC-CcccEEEEcccccc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYP-RTYDLLHAAGLFSV 330 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~ 330 (402)
...+|||+|||+|.++..|++.+. .|+.+| ++.+++.+.++.. ...+..-.+.+ +|+ ++||+|+|+.++++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-----~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~-~~~~~~fD~V~s~~~l~~ 115 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS-----QVTALDLSPPMLAQARQKDAADHYLAGDIESL-PLATATFDLAWSNLAVQW 115 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC-----eEEEEECCHHHHHHHHhhCCCCCEEEcCcccC-cCCCCcEEEEEECchhhh
Confidence 456799999999999999998876 566666 5678888877653 22233333443 366 79999999988887
Q ss_pred ccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 331 ESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 331 ~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
.. ++..+|.|+.|+|||||+++++.
T Consensus 116 ~~---d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 116 CG---NLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred cC---CHHHHHHHHHHHcCCCeEEEEEe
Confidence 65 46899999999999999999985
No 31
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.39 E-value=1.1e-12 Score=113.71 Aligned_cols=95 Identities=29% Similarity=0.561 Sum_probs=73.8
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
.++.+|||+|||+|.++..+.+. +++++|+++.++.. ........+....+.++++||+|+|+.+++|
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~ 90 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----------RNVVFDNFDAQDPPFPDGSFDLIICNDVLEH 90 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----------TTSEEEEEECHTHHCHSSSEEEEEEESSGGG
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----------hhhhhhhhhhhhhhccccchhhHhhHHHHhh
Confidence 56789999999999999999776 78899998765533 1122222222344556789999999988666
Q ss_pred cccChHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 87 WTRDDGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 87 ~~~d~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
.. ++..+++++.++|||||+++++++.
T Consensus 91 ~~-d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 91 LP-DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp SS-HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred cc-cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 55 8999999999999999999999753
No 32
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.38 E-value=4.4e-12 Score=117.27 Aligned_cols=102 Identities=18% Similarity=0.266 Sum_probs=79.2
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
++.+|||+|||+|.++..+++. .++++|+++.++..+.... ...+.. ..+...|...+++++++||+|+++.+
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 123 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKV-KDAGLHNVELVHGNAMELPFDDNSFDYVTIGFG 123 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HhcCCCceEEEEechhcCCCCCCCccEEEEecc
Confidence 4679999999999988877642 7899999987776555333 233333 34566677788888899999998766
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++.+++..+++++.++|+|||.+++...
T Consensus 124 -l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 124 -LRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred -cccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 55556889999999999999999998754
No 33
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.38 E-value=1.2e-12 Score=123.49 Aligned_cols=103 Identities=17% Similarity=0.250 Sum_probs=79.7
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
.++.+|||+|||+|..+..++.. .++++|+++.++..+..... . .....+...|+...|+++++||+|++..+++
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~-~-~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~ 128 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNS-D-KNKIEFEANDILKKDFPENTFDMIYSRDAIL 128 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcC-c-CCceEEEECCcccCCCCCCCeEEEEEhhhHH
Confidence 35679999999999988887653 78999998876654442211 1 1234466678778889889999999987777
Q ss_pred cccc-ChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTR-DDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~-d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+.. ++..++++++++|||||.++++..
T Consensus 129 h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 129 HLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 7753 678999999999999999999854
No 34
>PRK05785 hypothetical protein; Provisional
Probab=99.38 E-value=1.5e-12 Score=120.03 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=71.0
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
++.+|||+|||||.++..+.+. .++++|+++.|+..+ +++. .....+.+.+|+++++||+|+++.++ |
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a-----~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l-~ 121 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMN-----LVAD---DKVVGSFEALPFRDKSFDVVMSSFAL-H 121 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHH-----Hhcc---ceEEechhhCCCCCCCEEEEEecChh-h
Confidence 4679999999999999888765 788999988777544 3321 23566888999999999999998875 5
Q ss_pred cccChHHHHHHHHHhcCCCe
Q 015704 87 WTRDDGILLLEVNRMLRAGG 106 (402)
Q Consensus 87 ~~~d~~~~l~e~~r~LkpgG 106 (402)
+.+|+..++++++|+|||.+
T Consensus 122 ~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 122 ASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred ccCCHHHHHHHHHHHhcCce
Confidence 55689999999999999953
No 35
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.37 E-value=1.3e-12 Score=122.80 Aligned_cols=95 Identities=13% Similarity=0.184 Sum_probs=74.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCCCCCCcccEEEEcccccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKR 334 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~~~~ 334 (402)
..|||+|||+|.++..|+++.. ...|+++| ++.|++.+.++++ ..++.-.+.++ .+.+||+|+|+.+|+|+++
T Consensus 31 ~~vLDlGcG~G~~~~~l~~~~p---~~~v~gvD~s~~~~~~a~~~~~-~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d- 104 (255)
T PRK14103 31 RRVVDLGCGPGNLTRYLARRWP---GAVIEALDSSPEMVAAARERGV-DARTGDVRDWK-PKPDTDVVVSNAALQWVPE- 104 (255)
T ss_pred CEEEEEcCCCCHHHHHHHHHCC---CCEEEEEECCHHHHHHHHhcCC-cEEEcChhhCC-CCCCceEEEEehhhhhCCC-
Confidence 5699999999999999998731 12577777 5789998888775 23332233332 2379999999999999874
Q ss_pred CCHHHHHHHhhhhccCCcEEEEEe
Q 015704 335 CNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 335 ~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+..+|.++.|+|||||++++..
T Consensus 105 --~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 105 --HADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred --HHHHHHHHHHhCCCCcEEEEEc
Confidence 5899999999999999999974
No 36
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.37 E-value=1.2e-12 Score=122.99 Aligned_cols=105 Identities=21% Similarity=0.257 Sum_probs=81.2
Q ss_pred ccCCCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCC-CCCCCeeEEEe
Q 015704 6 TWIRLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLP-YPSQAFDLIHC 80 (402)
Q Consensus 6 ~~~~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp-~~~~sfDlI~s 80 (402)
.++.++.+|||+|||+|.++..+++. .|+++|+++.++..+. +.+.+.+.. ..+...++.+++ +++++||+|+|
T Consensus 40 ~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~-~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~ 118 (255)
T PRK11036 40 ELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAK-QAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILF 118 (255)
T ss_pred hcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHH-HHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEe
Confidence 34456679999999999999988876 7999999998887665 334444432 345666666553 56789999999
Q ss_pred cCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 81 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
..+ +++..++..+++++.++|||||.+++..
T Consensus 119 ~~v-l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 119 HAV-LEWVADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred hhH-HHhhCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 877 4555588999999999999999999874
No 37
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.37 E-value=2.3e-12 Score=116.29 Aligned_cols=100 Identities=17% Similarity=0.254 Sum_probs=75.8
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
++.+|||+|||+|.++..|+++ .|+++|+++.++..+. +.+...+.. ......|...++++ ++||+|+|+.++++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~-~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 107 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLE-RIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMF 107 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHH-HHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhh
Confidence 4579999999999999999876 7899999998876665 334444443 34555676666664 67999999877554
Q ss_pred ccc-ChHHHHHHHHHhcCCCeEEEEE
Q 015704 87 WTR-DDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 87 ~~~-d~~~~l~e~~r~LkpgG~li~~ 111 (402)
+.. +...+++++.++|||||++++.
T Consensus 108 ~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 108 LEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 442 3578999999999999996554
No 38
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.37 E-value=2.1e-12 Score=116.34 Aligned_cols=100 Identities=16% Similarity=0.238 Sum_probs=75.8
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
++.+|||+|||+|.++..++++ .|+++|+++.++..+. +.+...+........|....+++ ++||+|+|+.+++++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~ 107 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVL-DMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFL 107 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHHHhCCCceeEeccchhcccc-CCCCEEEEecccccC
Confidence 4579999999999999999876 7999999998776655 34445555544555565555554 579999998776655
Q ss_pred cc-ChHHHHHHHHHhcCCCeEEEEE
Q 015704 88 TR-DDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 88 ~~-d~~~~l~e~~r~LkpgG~li~~ 111 (402)
.. +...++++++++|+|||++++.
T Consensus 108 ~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 108 QAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 42 3578999999999999996554
No 39
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.35 E-value=2.2e-12 Score=121.26 Aligned_cols=96 Identities=25% Similarity=0.396 Sum_probs=75.2
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++ +.+++++ ..+...|++.++ ++++||+|+|+.+
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~-----~~a~~~~--~~~~~~d~~~~~-~~~~fD~v~~~~~- 98 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMV-----AAARERG--VDARTGDVRDWK-PKPDTDVVVSNAA- 98 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHH-----HHHHhcC--CcEEEcChhhCC-CCCCceEEEEehh-
Confidence 35679999999999999888754 689999987665 4444443 345566776664 4579999999876
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+||.+++..++++++++|||||.+++..+
T Consensus 99 l~~~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 99 LQWVPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred hhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 55666899999999999999999999853
No 40
>PLN02244 tocopherol O-methyltransferase
Probab=99.35 E-value=2.4e-12 Score=125.86 Aligned_cols=96 Identities=18% Similarity=0.261 Sum_probs=71.5
Q ss_pred CcceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHh----cCc---ccccccCCCCCCCCC-CcccEEE
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYD----RGL---IGVMHDWCEPFDTYP-RTYDLLH 323 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~----rg~---~~~~~~~~~~~~~~~-~sfD~v~ 323 (402)
.-.+|||+|||+|.++..|+++ ++ +|+++| ++.+++.+.+ +|+ +..+..-.+.+ +|+ ++||+|+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~-----~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~~FD~V~ 191 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGA-----NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-PFEDGQFDLVW 191 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCC-----EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-CCCCCCccEEE
Confidence 3456999999999999999986 55 555555 4555654433 344 33333333333 466 8999999
Q ss_pred EccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 324 AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
|..+++|+.+ ...+|.|+.|+|||||.+++.+
T Consensus 192 s~~~~~h~~d---~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 192 SMESGEHMPD---KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred ECCchhccCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 9999999875 5799999999999999999975
No 41
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.32 E-value=8e-12 Score=111.02 Aligned_cols=101 Identities=20% Similarity=0.357 Sum_probs=79.5
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
++.++||+|||.|+.+.+|+++ .|+++|.++..+.... +.+.+.+++......|+....++ +.||+|+|..++.++
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~-~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL 107 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQ-RLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFL 107 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHH-HHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccC
Confidence 4679999999999999999998 7999999998876653 67777888877777788777775 689999987666666
Q ss_pred ccC-hHHHHHHHHHhcCCCeEEEEEe
Q 015704 88 TRD-DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 88 ~~d-~~~~l~e~~r~LkpgG~li~~~ 112 (402)
..+ .+..++.+...++|||++++.+
T Consensus 108 ~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 108 QRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp -GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 544 3688999999999999998864
No 42
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.32 E-value=7.1e-12 Score=116.61 Aligned_cols=102 Identities=13% Similarity=0.090 Sum_probs=76.2
Q ss_pred CCCCeEEEECCccchhHHHHccC------CceEEeCCccchHHHHHHHHHHcC--CCcEEEeccccCCCCCCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFALERG--APAMVAAFATRRLPYPSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~------~v~~vdi~~~~~~~a~~~~a~~~~--~~~~~~~~d~~~lp~~~~sfDlI~s 80 (402)
.++.+|||+|||+|.++..+++. +++++|+++.++..+.... ...+ ....+...|+..++++ .+|+|++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~ 128 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHI-AAYHSEIPVEILCNDIRHVEIK--NASMVIL 128 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHH-HhcCCCCCeEEEECChhhCCCC--CCCEEee
Confidence 46679999999999988777542 6999999998886665333 2222 2345667788777765 5899998
Q ss_pred cCccccccc-ChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 81 SRCRINWTR-DDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 81 ~~~~~~~~~-d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+.+++++.. +...++++++++|+|||.++++..
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 877555542 357899999999999999999953
No 43
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.32 E-value=5.2e-13 Score=106.64 Aligned_cols=93 Identities=25% Similarity=0.403 Sum_probs=54.9
Q ss_pred EEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-CC-CCCCeeEEEecCcccccc
Q 015704 15 MDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-PY-PSQAFDLIHCSRCRINWT 88 (402)
Q Consensus 15 LDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~l-p~-~~~sfDlI~s~~~~~~~~ 88 (402)
||+|||+|.++..+.+. +++++|+++.++..+..+.................+. .. ..++||+|+++.+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999988877654 7899999999985555344332222222222222221 11 22599999999886666
Q ss_pred cChHHHHHHHHHhcCCCeEE
Q 015704 89 RDDGILLLEVNRMLRAGGYF 108 (402)
Q Consensus 89 ~d~~~~l~e~~r~LkpgG~l 108 (402)
+++..++++++++|||||.|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 78999999999999999986
No 44
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.32 E-value=6.2e-12 Score=120.74 Aligned_cols=101 Identities=14% Similarity=0.136 Sum_probs=76.2
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHH---cCCCcEEEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALE---RGAPAMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~---~~~~~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
.++++|||+|||+|.++..++.. .++|+|.++.++..+. .++. ......+...+++++|.. .+||+|+|+.
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~--~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~g 196 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFE--AVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMG 196 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHH--HHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcc
Confidence 35689999999999988777654 5899999987765432 1111 112234555677777754 4899999998
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++|+ .++..++++++++|||||.|++.+.
T Consensus 197 vL~H~-~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 197 VLYHR-KSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred hhhcc-CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 86665 4899999999999999999999864
No 45
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.31 E-value=8.3e-12 Score=127.75 Aligned_cols=103 Identities=18% Similarity=0.307 Sum_probs=80.2
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
.++.+|||+|||+|..+..++.. .++++|+++.++..+.. .+........+...|...+++++++||+|+|..+++
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~-~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALE-RAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTIL 343 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HhhcCCCceEEEEcCcccCCCCCCCEEEEEECCccc
Confidence 35679999999999888777754 68999999877655442 222222234566778888888888999999988866
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+. ++..++++++++|||||.++++.+
T Consensus 344 h~~-d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 344 HIQ-DKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred ccC-CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 664 899999999999999999999864
No 46
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.31 E-value=1.9e-12 Score=116.82 Aligned_cols=95 Identities=19% Similarity=0.305 Sum_probs=67.8
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHH----hcCcccccccCCCCCC--CCCCcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIY----DRGLIGVMHDWCEPFD--TYPRTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~----~rg~~~~~~~~~~~~~--~~~~sfD~v~~~~~~ 328 (402)
.+|||+|||.|.++..|+++|. +|+++| ++.+++.+. .+++ ..++..+.++. +++.+||+|+|..++
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~-----~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~fD~I~~~~~~ 105 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGF-----DVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTFDGEYDFILSTVVL 105 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCC-----EEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCcCCCcCEEEEecch
Confidence 4599999999999999999987 566666 455554433 3344 11211112222 235789999999999
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
.|++ ..+...++.++.|+|||||++++-
T Consensus 106 ~~~~-~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 106 MFLE-AKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred hhCC-HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 8876 345789999999999999996553
No 47
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.31 E-value=1.6e-12 Score=104.25 Aligned_cols=92 Identities=28% Similarity=0.485 Sum_probs=69.3
Q ss_pred EEEECCccchhHHHHcc-------CCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCc-cc
Q 015704 14 VMDAGCGVASFGAYLLP-------RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC-RI 85 (402)
Q Consensus 14 VLDiGcG~G~~~~~L~~-------~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~-~~ 85 (402)
|||+|||+|..+..+.+ ..++++|+++.++..+. +...+.+....+.+.|..++++.+++||+|+|+.. +.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~-~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAK-KRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHH-HHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHH-HhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 79999999988887763 37889999988886665 33333456777888899999988899999999555 55
Q ss_pred ccccC-hHHHHHHHHHhcCCCe
Q 015704 86 NWTRD-DGILLLEVNRMLRAGG 106 (402)
Q Consensus 86 ~~~~d-~~~~l~e~~r~LkpgG 106 (402)
|+.++ ...+++++.++|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 54433 4789999999999998
No 48
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.31 E-value=1.4e-11 Score=107.87 Aligned_cols=101 Identities=20% Similarity=0.275 Sum_probs=78.8
Q ss_pred CeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCCC-CCCCCeeEEEecCcccc
Q 015704 12 RVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLP-YPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~~lp-~~~~sfDlI~s~~~~~~ 86 (402)
..||++|||||..-....-. +|+++|.++.|-+-+....+..+..... +..++.+++| ++++|+|.|+|..++..
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCS 157 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCS 157 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEec
Confidence 36799999999877666532 8999999988765555444444333443 6777889998 88999999999877444
Q ss_pred cccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 87 WTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 87 ~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.+++.+.|+++.|+|||||.+++-.+
T Consensus 158 -ve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 158 -VEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred -cCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 45899999999999999999999854
No 49
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.30 E-value=1.9e-12 Score=122.18 Aligned_cols=109 Identities=21% Similarity=0.397 Sum_probs=72.7
Q ss_pred HHHHHHhcccCCCCcceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChh----hHHhcCcccccccCCCCCCC
Q 015704 241 IESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLP----VIYDRGLIGVMHDWCEPFDT 314 (402)
Q Consensus 241 ~~~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~----~~~~rg~~~~~~~~~~~~~~ 314 (402)
++.+.+.+.+.+|. +|||+|||.|+++.+++++ |+ +|++++ +.++.. .+.++|+...+.-.+.++..
T Consensus 51 ~~~~~~~~~l~~G~--~vLDiGcGwG~~~~~~a~~~g~-----~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~ 123 (273)
T PF02353_consen 51 LDLLCEKLGLKPGD--RVLDIGCGWGGLAIYAAERYGC-----HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD 123 (273)
T ss_dssp HHHHHTTTT--TT---EEEEES-TTSHHHHHHHHHH-------EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG
T ss_pred HHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCc-----EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc
Confidence 34556666677664 5999999999999999999 65 455554 445554 44566763222222334445
Q ss_pred CCCcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 315 YPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 315 ~~~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
++.+||-|+|-.+|+|+.. .+....+.++.|+|||||.+++.
T Consensus 124 ~~~~fD~IvSi~~~Ehvg~-~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 124 LPGKFDRIVSIEMFEHVGR-KNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp ---S-SEEEEESEGGGTCG-GGHHHHHHHHHHHSETTEEEEEE
T ss_pred cCCCCCEEEEEechhhcCh-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 5679999999999999974 46789999999999999999987
No 50
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.30 E-value=5.3e-11 Score=106.19 Aligned_cols=114 Identities=24% Similarity=0.342 Sum_probs=84.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc--ccccccCCCCCCCCCCcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMHDWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
.+|||+|||+|.++..++... ....|+++| ++.+++.+.+ .|+ +..++...+.+.. +++||+|+|..+
T Consensus 47 ~~VLDiGcGtG~~al~la~~~---~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~- 121 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIAR---PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV- 121 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHC---CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc-
Confidence 459999999999999888642 123677777 4566654443 344 4445544444443 569999999741
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEe
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLR 380 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 380 (402)
.+++.++.++.|+|||||++++-+..-....+.++...+.|.+..+
T Consensus 122 ------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 122 ------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEV 167 (187)
T ss_pred ------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeee
Confidence 3568999999999999999999988878888999999999997665
No 51
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.30 E-value=2.2e-11 Score=115.54 Aligned_cols=103 Identities=23% Similarity=0.272 Sum_probs=78.8
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
.++.+|||+|||+|..+..++.. .++++|+++.++..+.. .....+.. ..+...+++.+|+++++||+|+++.
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~-~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARA-NARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHH-HHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 35779999999999766544432 58999999887766553 33334443 3456678888898888999999876
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+ +|+..+...+++++.++|||||.++++..
T Consensus 155 v-~~~~~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 155 V-INLSPDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred c-ccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 5 55666888999999999999999999864
No 52
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.29 E-value=1e-11 Score=117.85 Aligned_cols=102 Identities=20% Similarity=0.322 Sum_probs=75.9
Q ss_pred CCCCeEEEECCccchhHHHHccC-------CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEec
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-------NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCS 81 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-------~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~ 81 (402)
.+..+|||+|||+|.++..+.+. .++++|+++.++ +.++++.....+...|...+|+++++||+|++.
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l-----~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~ 158 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAI-----KYAAKRYPQVTFCVASSHRLPFADQSLDAIIRI 158 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHH-----HHHHHhCCCCeEEEeecccCCCcCCceeEEEEe
Confidence 35578999999999988877643 368888887655 444444444556777888899999999999975
Q ss_pred CcccccccChHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHH
Q 015704 82 RCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 124 (402)
Q Consensus 82 ~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~ 124 (402)
.. ...++++.|+|||||++++.+ |....+.+++.
T Consensus 159 ~~--------~~~~~e~~rvLkpgG~li~~~-p~~~~l~el~~ 192 (272)
T PRK11088 159 YA--------PCKAEELARVVKPGGIVITVT-PGPRHLFELKG 192 (272)
T ss_pred cC--------CCCHHHHHhhccCCCEEEEEe-CCCcchHHHHH
Confidence 32 134689999999999999996 45555555543
No 53
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.29 E-value=3.2e-12 Score=115.16 Aligned_cols=119 Identities=18% Similarity=0.238 Sum_probs=79.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHH----hcCc-ccccccCCCCCCCCCCcccEEEEccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIY----DRGL-IGVMHDWCEPFDTYPRTYDLLHAAGLFS 329 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~----~rg~-~~~~~~~~~~~~~~~~sfD~v~~~~~~~ 329 (402)
..|||+|||+|.++..|+++|. .|+++| ++.+++.+. +.|+ +.....-... .+++.+||+|+|+.+|+
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~-----~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~I~~~~~~~ 105 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGY-----DVRAWDHNPASIASVLDMKARENLPLRTDAYDINA-AALNEDYDFIFSTVVFM 105 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCC-----eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchh-ccccCCCCEEEEecccc
Confidence 3699999999999999999987 555555 455665443 3344 1111111111 23457899999999999
Q ss_pred cccccCCHHHHHHHhhhhccCCcEEEEEeC--------------hhhHHHHHHHHHhcCceEEEeecC
Q 015704 330 VESKRCNMSTIMLEMDRMLRPGGHVYIRDS--------------IDVMDELQEIGKAMGWHVTLRETA 383 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~--------------~~~~~~~~~~~~~~~w~~~~~~~~ 383 (402)
|+.. .+...++.++.|+|||||++++-+- ......+...+.. |++...++.
T Consensus 106 ~~~~-~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~~--~~~~~~~e~ 170 (195)
T TIGR00477 106 FLQA-GRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYAD--WELLKYNEA 170 (195)
T ss_pred cCCH-HHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhCC--CeEEEeecc
Confidence 8863 3568999999999999999554310 0224556666654 877766643
No 54
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.29 E-value=2.6e-11 Score=117.43 Aligned_cols=100 Identities=18% Similarity=0.213 Sum_probs=77.3
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+..... .....+...|.+.+++++++||+|+++.++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L 188 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCCCCceeEEEEcChh
Confidence 35679999999999988777542 68899998877655442211 112345667888889988999999998776
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+++. ++...++++.++|||||.+++..
T Consensus 189 ~~~~-d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 189 EYWP-DPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred hhCC-CHHHHHHHHHHhcCCCcEEEEEE
Confidence 5554 78899999999999999998874
No 55
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.28 E-value=1.5e-12 Score=104.03 Aligned_cols=90 Identities=24% Similarity=0.367 Sum_probs=52.8
Q ss_pred EeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCC-CCCCC-CcccEEEEccccc
Q 015704 259 LDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEP-FDTYP-RTYDLLHAAGLFS 329 (402)
Q Consensus 259 LD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~-~~~~~-~sfD~v~~~~~~~ 329 (402)
||+|||+|.++..++++. ....++.+| ++.+++.+.+| +. ...+.-...+ +...+ ++||+|++.+||+
T Consensus 1 LdiGcG~G~~~~~l~~~~---~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL---PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC----EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhC---CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 899999999999999883 344666766 56666444443 21 1112211122 22223 5999999999999
Q ss_pred cccccCCHHHHHHHhhhhccCCcEE
Q 015704 330 VESKRCNMSTIMLEMDRMLRPGGHV 354 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpgG~~ 354 (402)
|+. ++..+|..+.++|||||.+
T Consensus 78 ~l~---~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLE---DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S----HHHHHHHHTTT-TSS-EE
T ss_pred hhh---hHHHHHHHHHHHcCCCCCC
Confidence 994 5789999999999999986
No 56
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.28 E-value=7e-12 Score=119.81 Aligned_cols=116 Identities=18% Similarity=0.257 Sum_probs=80.7
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhH----HhcCcccccccCCCCCC--CCCCcccEEEEccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVI----YDRGLIGVMHDWCEPFD--TYPRTYDLLHAAGLFS 329 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~----~~rg~~~~~~~~~~~~~--~~~~sfD~v~~~~~~~ 329 (402)
+|||+|||+|.++..|+++|+ .|+++| ++.+++.+ .+.++ .+...+.++. .++++||+|+|..+|+
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~-----~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~fD~I~~~~vl~ 195 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGF-----DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEEYDFILSTVVLM 195 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCCccEEEEcchhh
Confidence 599999999999999999987 556666 44555433 34455 1111111222 2357999999999999
Q ss_pred cccccCCHHHHHHHhhhhccCCcEEEEEe---Ch-----------hhHHHHHHHHHhcCceEEEeec
Q 015704 330 VESKRCNMSTIMLEMDRMLRPGGHVYIRD---SI-----------DVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpgG~~~~~~---~~-----------~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
|+.. .++..++.+|.|+|||||++++-. .. .....+++.+.. |++....+
T Consensus 196 ~l~~-~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~e 259 (287)
T PRK12335 196 FLNR-ERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYNE 259 (287)
T ss_pred hCCH-HHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEec
Confidence 9873 467899999999999999966532 10 225567777766 99887643
No 57
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.28 E-value=2.8e-12 Score=104.52 Aligned_cols=97 Identities=25% Similarity=0.369 Sum_probs=69.5
Q ss_pred eEEeccccchHHHHHHhh--cCCCceEEEeccCC-CCCChhhHHhcC----c---ccccccCCCCCCCCCCcccEEEEcc
Q 015704 257 NVLDMRAGFGGFAAALIE--QKFDCWVMNVVPVS-GFNTLPVIYDRG----L---IGVMHDWCEPFDTYPRTYDLLHAAG 326 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~--~~~~~~~~~v~~~~-~~~~~~~~~~rg----~---~~~~~~~~~~~~~~~~sfD~v~~~~ 326 (402)
+|||+|||+|.++..|++ .++ .|+++| ++.+++.+.++- . +..++.-......++..||+|++..
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGA-----RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG 78 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTS-----EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred EEEEEcCcCCHHHHHHHhcCCCC-----EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence 599999999999999999 666 566666 456776665553 3 4444432211134456899999999
Q ss_pred -ccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 327 -LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 327 -~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
.+.++.+..+...+|.++.+.|||||++++++
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 44444332356799999999999999999985
No 58
>PRK05785 hypothetical protein; Provisional
Probab=99.27 E-value=1.2e-11 Score=113.90 Aligned_cols=86 Identities=20% Similarity=0.303 Sum_probs=70.1
Q ss_pred ceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCCCCC-CcccEEEEcccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHAAGLFSVES 332 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~ 332 (402)
.+|||+|||+|.++..|+++ +. +|+++| +++|++.+.++.- .++...+.+ +|+ +|||+|+|+.+++|..
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~~~-----~v~gvD~S~~Ml~~a~~~~~--~~~~d~~~l-p~~d~sfD~v~~~~~l~~~~ 124 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVFKY-----YVVALDYAENMLKMNLVADD--KVVGSFEAL-PFRDKSFDVVMSSFALHASD 124 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhcCC-----EEEEECCCHHHHHHHHhccc--eEEechhhC-CCCCCCEEEEEecChhhccC
Confidence 46999999999999999988 33 788888 7899999887642 344445664 477 8999999999998866
Q ss_pred ccCCHHHHHHHhhhhccCCc
Q 015704 333 KRCNMSTIMLEMDRMLRPGG 352 (402)
Q Consensus 333 ~~~~~~~~l~e~~RvLrpgG 352 (402)
+++.+|.||.|+|||.+
T Consensus 125 ---d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 125 ---NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred ---CHHHHHHHHHHHhcCce
Confidence 46899999999999954
No 59
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.26 E-value=1.9e-11 Score=117.39 Aligned_cols=95 Identities=13% Similarity=0.115 Sum_probs=66.1
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhh---HHh----cCcccccccCCCCCCCCCCcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPV---IYD----RGLIGVMHDWCEPFDTYPRTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~---~~~----rg~~~~~~~~~~~~~~~~~sfD~v~~~~~ 327 (402)
+.|||+|||+|.++..++..|+. .|+++| +..++.. +.. .+.+.......+.++ ++.+||+|+|.++
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~----~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp-~~~~FD~V~s~gv 197 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAK----SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLH-ELYAFDTVFSMGV 197 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC----EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCC-CCCCcCEEEEcch
Confidence 46999999999999999988752 345555 3444432 111 111222222223333 2369999999999
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+.|.. ++..+|.|+.|+|||||.+++.+
T Consensus 198 L~H~~---dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 198 LYHRK---SPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred hhccC---CHHHHHHHHHHhcCCCCEEEEEE
Confidence 99976 57899999999999999999873
No 60
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.26 E-value=1.4e-11 Score=119.27 Aligned_cols=95 Identities=18% Similarity=0.231 Sum_probs=67.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhh--HHhc--C---cccccccCCCCCCCCCCcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPV--IYDR--G---LIGVMHDWCEPFDTYPRTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~--~~~r--g---~~~~~~~~~~~~~~~~~sfD~v~~~~~ 327 (402)
+.|||+|||+|.++..|+..|+. .|+++| ++.++.. +..+ + -+..+..-.+.++. +++||+|+|..+
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~----~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~v 198 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAK----LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGV 198 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC----EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECCh
Confidence 46999999999999999998752 255555 3333321 1111 1 13333333344443 689999999999
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
++|.. ++..+|.++.|+|||||.+++.+
T Consensus 199 l~H~~---dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 199 LYHRR---SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred hhccC---CHHHHHHHHHHhcCCCcEEEEEE
Confidence 99965 57899999999999999999873
No 61
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.26 E-value=2.1e-11 Score=116.55 Aligned_cols=100 Identities=16% Similarity=0.247 Sum_probs=76.1
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
++.+|||+|||+|.++..++.. .|+++|+++.++..+. +.+...+....+...|....++ +++||+|+++.++++.
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 3469999999999999988876 7999999988876554 4555556655555556655554 5789999998775554
Q ss_pred cc-ChHHHHHHHHHhcCCCeEEEEE
Q 015704 88 TR-DDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 88 ~~-d~~~~l~e~~r~LkpgG~li~~ 111 (402)
.. +...+++++.++|+|||++++.
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 42 3578999999999999997664
No 62
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.25 E-value=3.2e-11 Score=109.30 Aligned_cols=104 Identities=18% Similarity=0.222 Sum_probs=77.5
Q ss_pred cCCCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccc-cCCC--CCCCCeeEE
Q 015704 7 WIRLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFAT-RRLP--YPSQAFDLI 78 (402)
Q Consensus 7 ~~~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~-~~lp--~~~~sfDlI 78 (402)
+..+..+|||+|||+|.++..+++. .++++|+++.++..+... +...+.. ..+...|+ +.++ +++++||+|
T Consensus 37 ~~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~-~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V 115 (202)
T PRK00121 37 FGNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKK-IEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRI 115 (202)
T ss_pred cCCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHH-HHHcCCCCEEEEecCHHHHHHHHcCccccceE
Confidence 3456789999999999988877653 699999999888666533 3333433 34666676 6666 777899999
Q ss_pred EecCccccccc--------ChHHHHHHHHHhcCCCeEEEEEe
Q 015704 79 HCSRCRINWTR--------DDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 79 ~s~~~~~~~~~--------d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+++.. .+|.. ....+++++.++|||||.+++++
T Consensus 116 ~~~~~-~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 116 YLNFP-DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred EEECC-CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 98654 33322 13678999999999999999986
No 63
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.24 E-value=1e-11 Score=112.98 Aligned_cols=94 Identities=13% Similarity=0.206 Sum_probs=74.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc------------ccccccCCCCCCCCCCcccEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL------------IGVMHDWCEPFDTYPRTYDLL 322 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~------------~~~~~~~~~~~~~~~~sfD~v 322 (402)
++|||+|||.|-.+..|+..|+ +|+++| +..+++.|.+..- +...+.-. ...-..||.|
T Consensus 91 ~~ilDvGCGgGLLSepLArlga-----~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~---E~~~~~fDaV 162 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGA-----QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDV---EGLTGKFDAV 162 (282)
T ss_pred ceEEEeccCccccchhhHhhCC-----eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcch---hhccccccee
Confidence 4599999999999999999998 888888 6788888877621 11222222 2233469999
Q ss_pred EEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 323 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
.|+.|++|..+ +...+.-+.+.|||||.++|++-+
T Consensus 163 vcsevleHV~d---p~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 163 VCSEVLEHVKD---PQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred eeHHHHHHHhC---HHHHHHHHHHHhCCCCceEeeehh
Confidence 99999999774 689999999999999999999643
No 64
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.24 E-value=3.9e-11 Score=105.72 Aligned_cols=102 Identities=23% Similarity=0.253 Sum_probs=71.9
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
...+|||+|||+|.++..++.. .++++|+++..+..+. +.+...+.. ..+...|... +.++++||+|+||..+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~-~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~ 108 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAK-RNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPF 108 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHH-HHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---S
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH-HHHHhcCccccccccccccc-cccccceeEEEEccch
Confidence 5679999999999999888875 4899999987776554 444455555 4445555322 2346899999999774
Q ss_pred cccccC----hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 85 INWTRD----DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~~~d----~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+.-..+ ...++++..+.|+|||.+++...
T Consensus 109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 109 HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 433321 36789999999999999987743
No 65
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.23 E-value=5.2e-12 Score=112.23 Aligned_cols=122 Identities=23% Similarity=0.321 Sum_probs=80.8
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcCcccccccCCCCCCC--CCCcccEEEEccccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDT--YPRTYDLLHAAGLFSVESK 333 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg~~~~~~~~~~~~~~--~~~sfD~v~~~~~~~~~~~ 333 (402)
..+||+|||.|.-+.+||++|++|..+++.+..-....++|.++++- ++..+.++.. +++.||+|+|..||.|++
T Consensus 32 g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~fL~- 108 (192)
T PF03848_consen 32 GKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVSTVVFMFLQ- 108 (192)
T ss_dssp SEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEESSGGGS--
T ss_pred CcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEEEEeccCC-
Confidence 46999999999999999999995444444443323344667677771 2222233333 457999999999999999
Q ss_pred cCCHHHHHHHhhhhccCCcEEEEEe---Ch-----------hhHHHHHHHHHhcCceEEEeec
Q 015704 334 RCNMSTIMLEMDRMLRPGGHVYIRD---SI-----------DVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 334 ~~~~~~~l~e~~RvLrpgG~~~~~~---~~-----------~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
+..+..++..|..-+||||++++-. .. .....++..+. .|++....+
T Consensus 109 ~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y~E 169 (192)
T PF03848_consen 109 RELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKYNE 169 (192)
T ss_dssp GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEEEE
T ss_pred HHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEEEc
Confidence 5578899999999999999988842 11 11235556555 499876543
No 66
>PRK06922 hypothetical protein; Provisional
Probab=99.23 E-value=2.8e-11 Score=124.30 Aligned_cols=102 Identities=14% Similarity=0.098 Sum_probs=78.0
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC--CCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--YPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp--~~~~sfDlI~s~~~ 83 (402)
++.+|||+|||+|.++..+++. .++|+|+++.++..+... ....+....+..+|...+| +++++||+|+++.+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Arar-l~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKK-KQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-hhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 4679999999999888777643 799999999888666533 2223334445666777777 78899999999877
Q ss_pred ccccc------------cChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWT------------RDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~------------~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
++++. .+...++++++++|||||.+++..
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 66552 245789999999999999999985
No 67
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.21 E-value=6.6e-11 Score=111.33 Aligned_cols=117 Identities=16% Similarity=0.206 Sum_probs=80.2
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-ccccccCCCCCCCCCCcccEEEEcccccccc
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYPRTYDLLHAAGLFSVES 332 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~~ 332 (402)
-.+|||+|||+|.++..|+++.. ..+|+++| ++.+++.+.++-- +..+..-.+.+. .+++||+|+|+.+|+|+.
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~ 107 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERWP---AARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQWLP 107 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChhhCC
Confidence 35699999999999999998731 12566766 5677777766531 222222222221 237999999999999987
Q ss_pred ccCCHHHHHHHhhhhccCCcEEEEEeCh----hhHHHHHHHHHhcCceEE
Q 015704 333 KRCNMSTIMLEMDRMLRPGGHVYIRDSI----DVMDELQEIGKAMGWHVT 378 (402)
Q Consensus 333 ~~~~~~~~l~e~~RvLrpgG~~~~~~~~----~~~~~~~~~~~~~~w~~~ 378 (402)
+ +..+|.++.|+|||||++++..+. .....++++.....|...
T Consensus 108 d---~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 154 (258)
T PRK01683 108 D---HLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQN 154 (258)
T ss_pred C---HHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHH
Confidence 4 589999999999999999997422 122345555555556543
No 68
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.21 E-value=1.1e-10 Score=104.21 Aligned_cols=97 Identities=20% Similarity=0.144 Sum_probs=75.4
Q ss_pred CCCeEEEECCccchhHHHHcc----CCceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~----~~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
++.+|||+|||+|..+..++. ..|+++|.++.++..+. +.+++.+.+ ..+...+...++. .++||+|+|+.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~-~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~-- 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLR-EVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA-- 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHH-HHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc--
Confidence 478999999999988877764 27999999998887665 444445554 4466667777766 67999999863
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
..+...++++++++|||||.+++...
T Consensus 121 ---~~~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 121 ---VASLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred ---ccCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 23678899999999999999999853
No 69
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.21 E-value=7.2e-11 Score=109.14 Aligned_cols=98 Identities=21% Similarity=0.311 Sum_probs=70.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCC-CcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
.+|||+|||+|.++..|++... ...+|+.+| ++++++.+.++ ++ +..++...+.+ ++| ++||+|++..+
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~~ 123 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVG--PEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL-PFDDNSFDYVTIGFG 123 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC-CCCCCCccEEEEecc
Confidence 4699999999999999987621 112566666 45666555543 22 33344333443 366 79999999999
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
++|+.+ +..+|.|+.|+|||||++++.+.
T Consensus 124 l~~~~~---~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 124 LRNVPD---YMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred cccCCC---HHHHHHHHHHHcCcCeEEEEEEC
Confidence 988764 57999999999999999998763
No 70
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.21 E-value=1.1e-11 Score=108.84 Aligned_cols=93 Identities=20% Similarity=0.287 Sum_probs=73.3
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCCCCC-CcccEEEEcccccccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESKR 334 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~~~ 334 (402)
+|||+|||.|.+.++|.+.. +|. +.+++ .+..+..+.+||+--...+.-+.+..|| +|||.|+++++++++.+
T Consensus 16 rVLDLGCGdG~LL~~L~~~k-~v~---g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~- 90 (193)
T PF07021_consen 16 RVLDLGCGDGELLAYLKDEK-QVD---GYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRR- 90 (193)
T ss_pred EEEecCCCchHHHHHHHHhc-CCe---EEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhH-
Confidence 49999999999999999852 333 33444 3556888899999434446667778899 89999999999999874
Q ss_pred CCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 335 CNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 335 ~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
|+.+|.||.|| |...|++=+
T Consensus 91 --P~~vL~EmlRV---gr~~IVsFP 110 (193)
T PF07021_consen 91 --PDEVLEEMLRV---GRRAIVSFP 110 (193)
T ss_pred --HHHHHHHHHHh---cCeEEEEec
Confidence 68999999877 678888843
No 71
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.20 E-value=2.1e-11 Score=105.31 Aligned_cols=99 Identities=20% Similarity=0.368 Sum_probs=73.3
Q ss_pred ceEEeccccchHHHHHHhh-cCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCC-CCCcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIE-QKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDT-YPRTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~-~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~-~~~sfD~v~~~~ 326 (402)
.+|||+|||+|.++..|++ .+. ...++.+| ++.+++.+..+ ++ +..++...+.++. |++.||+|++..
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~---~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNP---GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTT---TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CEEEEecCcCcHHHHHHHHhcCC---CCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 3599999999999999994 321 12577777 57788777663 44 3444433333221 458999999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
++.|..+ +..+|.++.|.|||||.+++++..
T Consensus 82 ~l~~~~~---~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPD---PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTSH---HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccC---HHHHHHHHHHHcCCCcEEEEEECC
Confidence 9988764 579999999999999999999876
No 72
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.20 E-value=1.8e-11 Score=111.34 Aligned_cols=99 Identities=16% Similarity=0.182 Sum_probs=73.4
Q ss_pred CCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCc----E--EEeccccCCCCCCCCeeEEEecC
Q 015704 11 LRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA----M--VAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~----~--~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
+.+|||+|||+|.++..|++. .|+|+|++..++..+....+...-... . +.+.+.+.+ .+.||.|+|+.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeHH
Confidence 467999999999999999876 899999998877666543111110011 1 222233333 34599999999
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++|.. |++.++..+.+.|||||.+++++.
T Consensus 167 vleHV~-dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 167 VLEHVK-DPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred HHHHHh-CHHHHHHHHHHHhCCCCceEeeeh
Confidence 977765 999999999999999999999973
No 73
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.19 E-value=1.8e-11 Score=112.56 Aligned_cols=118 Identities=23% Similarity=0.297 Sum_probs=81.7
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCCCcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
.|||+|||.|.++..+++...++ +|+++| ++++++.+.++ |+ +..+..-.+.. +++.+||+|++.+++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~---~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~~~~~fD~I~~~~~l 77 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHL---QLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-PFPDTYDLVFGFEVI 77 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-CCCCCCCEeehHHHH
Confidence 59999999999999998874222 444554 45666555543 44 23333222221 356799999999999
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeChh----------------hHHHHHHHHHhcCceEEEee
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID----------------VMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~----------------~~~~~~~~~~~~~w~~~~~~ 381 (402)
+|+.+ ...+|.++.|+|||||++++.+... ....+..++.+-.+++....
T Consensus 78 ~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 78 HHIKD---KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred HhCCC---HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 99875 5899999999999999999986421 13456666777777765543
No 74
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.19 E-value=4.6e-11 Score=108.04 Aligned_cols=117 Identities=19% Similarity=0.219 Sum_probs=83.3
Q ss_pred ceEEeccccchHHHHHHhhcCCCc---eEEEeccCC-CCCChhhHHhcC----c-----ccccccCCCCCCCCC-CcccE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDC---WVMNVVPVS-GFNTLPVIYDRG----L-----IGVMHDWCEPFDTYP-RTYDL 321 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~---~~~~v~~~~-~~~~~~~~~~rg----~-----~~~~~~~~~~~~~~~-~sfD~ 321 (402)
-++||++||+|-+|-.+.+.-.+. ...+|+-.| ++.||..+..|. + +..+-..+|.+| || ++||+
T Consensus 102 m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp-Fdd~s~D~ 180 (296)
T KOG1540|consen 102 MKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP-FDDDSFDA 180 (296)
T ss_pred CeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-CCCCccee
Confidence 569999999998888887662210 114666666 678886666554 4 222333457766 99 89999
Q ss_pred EEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeChhhH-HHHHHHHHhcCce
Q 015704 322 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVM-DELQEIGKAMGWH 376 (402)
Q Consensus 322 v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~-~~~~~~~~~~~w~ 376 (402)
...+.-+.... +++.+|+|++|||||||.|.+-+=..+. ..++.++..--.+
T Consensus 181 yTiafGIRN~t---h~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~ 233 (296)
T KOG1540|consen 181 YTIAFGIRNVT---HIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFD 233 (296)
T ss_pred EEEecceecCC---CHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhh
Confidence 99998777765 4699999999999999999998755444 5666665544333
No 75
>PRK08317 hypothetical protein; Provisional
Probab=99.19 E-value=9.9e-11 Score=108.17 Aligned_cols=101 Identities=24% Similarity=0.320 Sum_probs=76.9
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
++.+|||+|||+|.++..+++. .++++|+++..+..+... .........+...|...+++++++||+|++..++
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVL 97 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhCCCCceEEEecccccCCCCCCCceEEEEechh
Confidence 5679999999999988877643 688999988666444322 1111223445666777788888999999998775
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.++. ++..+++++.++|+|||.+++..
T Consensus 98 ~~~~-~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 98 QHLE-DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred hccC-CHHHHHHHHHHHhcCCcEEEEEe
Confidence 5554 89999999999999999999985
No 76
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.18 E-value=9.7e-11 Score=114.16 Aligned_cols=100 Identities=19% Similarity=0.207 Sum_probs=73.7
Q ss_pred CCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 11 LRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
..+|||+|||+|.++..++++ .++++|+++.++..+.. .....+....+...|... ..+++||+|+|+..+++
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~-nl~~n~l~~~~~~~D~~~--~~~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRA-TLAANGLEGEVFASNVFS--DIKGRFDMIISNPPFHD 273 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCEEEEccccc--ccCCCccEEEECCCccC
Confidence 458999999999999888764 68999999888876653 334455555555445432 23578999999887554
Q ss_pred ccc----ChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 87 WTR----DDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 87 ~~~----d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
... ....+++++.+.|||||.+++...
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 221 236899999999999999999864
No 77
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.17 E-value=4.5e-09 Score=103.33 Aligned_cols=130 Identities=16% Similarity=0.155 Sum_probs=81.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-----ccccccCCCCCCCCC-CcccEEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-----IGVMHDWCEPFDTYP-RTYDLLHA 324 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-----~~~~~~~~~~~~~~~-~sfD~v~~ 324 (402)
..|||+|||+|.++..+++++. ...|+.+| ++.+++.+.+. +. +..+.+. .+..++ .+||+|+|
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P---~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D--~l~~~~~~~fDlIls 304 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNP---QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINN--ALSGVEPFRFNAVLC 304 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcc--ccccCCCCCEEEEEE
Confidence 4699999999999999998852 23566666 44566555432 11 2233221 123344 69999999
Q ss_pred cccccccccc--CCHHHHHHHhhhhccCCcEEEEEeCh--hhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEec
Q 015704 325 AGLFSVESKR--CNMSTIMLEMDRMLRPGGHVYIRDSI--DVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADKR 398 (402)
Q Consensus 325 ~~~~~~~~~~--~~~~~~l~e~~RvLrpgG~~~~~~~~--~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 398 (402)
.--|+..... .....++.+..|+|||||.+++--+. .....+++++. ++.... +..+.+|+-++|.
T Consensus 305 NPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg----~~~~va----~~~kf~vl~a~k~ 374 (378)
T PRK15001 305 NPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG----NCTTIA----TNNKFVVLKAVKL 374 (378)
T ss_pred CcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcC----CceEEc----cCCCEEEEEEEeC
Confidence 7666433211 12357899999999999999998432 33455555443 222222 2347889988883
No 78
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.17 E-value=2.4e-11 Score=106.92 Aligned_cols=138 Identities=15% Similarity=0.200 Sum_probs=92.4
Q ss_pred ccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc----ccccccCCCCCCC-CC-CcccE
Q 015704 249 HWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL----IGVMHDWCEPFDT-YP-RTYDL 321 (402)
Q Consensus 249 ~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~----~~~~~~~~~~~~~-~~-~sfD~ 321 (402)
.++..+++++||+|||.|.|++.|+.+.- .++.+| ++..++.|.+|-- |..++ -.++. .| .+||+
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd-----~LlavDis~~Al~~Ar~Rl~~~~~V~~~~---~dvp~~~P~~~FDL 109 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRCD-----RLLAVDISPRALARARERLAGLPHVEWIQ---ADVPEFWPEGRFDL 109 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGEE-----EEEEEES-HHHHHHHHHHTTT-SSEEEEE---S-TTT---SS-EEE
T ss_pred hcCccccceeEecCCCccHHHHHHHHhhC-----ceEEEeCCHHHHHHHHHhcCCCCCeEEEE---CcCCCCCCCCCeeE
Confidence 47888999999999999999999999953 677776 5677888877733 32232 12233 36 89999
Q ss_pred EEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh----------hhHHHHHHHHHhcCceEEEeecCCCCCCceE
Q 015704 322 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI----------DVMDELQEIGKAMGWHVTLRETAEGPHASYR 391 (402)
Q Consensus 322 v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~----------~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 391 (402)
|+++.|+.|+.+..++..++..+...|+|||.+|+-.-. .-.+.|.+++.+.-=++.-..-..++ ..|-
T Consensus 110 IV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~-~~~~ 188 (201)
T PF05401_consen 110 IVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGGS-PNED 188 (201)
T ss_dssp EEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SS-TTSE
T ss_pred EEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCCC-CCCc
Confidence 999999999987667788999999999999999997432 12456666666655555544443322 3444
Q ss_pred EEEE
Q 015704 392 ILTA 395 (402)
Q Consensus 392 ~l~~ 395 (402)
-|.+
T Consensus 189 ~~~~ 192 (201)
T PF05401_consen 189 CLLA 192 (201)
T ss_dssp EEEE
T ss_pred eEee
Confidence 4444
No 79
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.16 E-value=1e-10 Score=107.52 Aligned_cols=99 Identities=22% Similarity=0.312 Sum_probs=73.7
Q ss_pred CeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 12 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
++|||+|||+|.++..+++. .++++|+++.++..+.. .....+.. ..+...|....|++ ++||+|++..+++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~-~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~ 78 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRE-RIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIH 78 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHH
Confidence 47999999999988877653 68899998776655542 33333332 24555666555654 5899999887766
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|. .+...+++++.++|||||.+++...
T Consensus 79 ~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 79 HI-KDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred hC-CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 65 4789999999999999999999863
No 80
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.16 E-value=3.4e-11 Score=112.05 Aligned_cols=99 Identities=7% Similarity=0.095 Sum_probs=72.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~~~ 326 (402)
.+|||+|||+|.++..|+++.. -...+++++| +++++..+.++ +. +..++. ++..+| ..+|+|+|+.
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~-~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~d~v~~~~ 130 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNIN-QPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCN---DIRHVEIKNASMVILNF 130 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcC-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEEC---ChhhCCCCCCCEEeeec
Confidence 3599999999999999987521 0123677777 57788777654 21 223332 223344 5799999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
+++|+.+. +...+|.++.|+|||||.++++|.
T Consensus 131 ~l~~~~~~-~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 131 TLQFLPPE-DRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred chhhCCHH-HHHHHHHHHHHhcCCCeEEEEeec
Confidence 99998742 467999999999999999999975
No 81
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.16 E-value=1.2e-10 Score=104.83 Aligned_cols=105 Identities=17% Similarity=0.261 Sum_probs=76.6
Q ss_pred cCCCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCC---CCCCCeeEE
Q 015704 7 WIRLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP---YPSQAFDLI 78 (402)
Q Consensus 7 ~~~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp---~~~~sfDlI 78 (402)
++....+|||||||+|.++..++.+ .++++|++..++..+. +.+...+.. ..+...|+..++ ++++++|.|
T Consensus 13 f~~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~-~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v 91 (194)
T TIGR00091 13 FGNKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAAN-NKANKLGLKNLHVLCGDANELLDKFFPDGSLSKV 91 (194)
T ss_pred hCCCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHH-HHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEE
Confidence 3445679999999999998888764 7899999988776665 333444444 345666765443 456799999
Q ss_pred EecCcccccccCh--------HHHHHHHHHhcCCCeEEEEEeC
Q 015704 79 HCSRCRINWTRDD--------GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 79 ~s~~~~~~~~~d~--------~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++.. .+|.... ..++++++++|||||.+++.+.
T Consensus 92 ~~~~p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 92 FLNFP-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred EEECC-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 97654 4554321 5789999999999999999963
No 82
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.16 E-value=2.9e-11 Score=113.04 Aligned_cols=98 Identities=8% Similarity=0.160 Sum_probs=71.9
Q ss_pred ceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~~ 325 (402)
.+|||+|||+|..+..|+.. .. ....|+.+| ++.|++.+.++ |+ +..+.. ++..+| ..||+|++.
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~--~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~---d~~~~~~~~~D~vv~~ 132 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHH--DNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEG---DIRDIAIENASMVVLN 132 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeC---ChhhCCCCCCCEEehh
Confidence 35999999999999888762 00 123677777 57888777665 22 333322 223344 579999999
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
.+++|+.+ .+...++.||.|+|||||.++++|.
T Consensus 133 ~~l~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 133 FTLQFLEP-SERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hHHHhCCH-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 99999874 3467999999999999999999973
No 83
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.15 E-value=5.4e-11 Score=105.07 Aligned_cols=97 Identities=26% Similarity=0.337 Sum_probs=80.0
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
+..+|.|+|||+|..+..|+++ .++|+|.|+.|+ ..|+++..+..+..+|+.... ++..+|++++|. .+
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Ml-----a~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNA-vl 102 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAML-----AKAAQRLPDATFEEADLRTWK-PEQPTDLLFANA-VL 102 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHH-----HHHHHhCCCCceecccHhhcC-CCCccchhhhhh-hh
Confidence 5679999999999999988876 677777776555 556677777778788876664 457899999765 59
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
||.+|-..+|.++...|.|||.+.+..+
T Consensus 103 qWlpdH~~ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 103 QWLPDHPELLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred hhccccHHHHHHHHHhhCCCceEEEECC
Confidence 9999999999999999999999999954
No 84
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.15 E-value=8.7e-11 Score=116.38 Aligned_cols=93 Identities=24% Similarity=0.406 Sum_probs=71.3
Q ss_pred eEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhcC--c-ccccccCCCCCCCCCCcccEEEEccccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRG--L-IGVMHDWCEPFDTYPRTYDLLHAAGLFSVE 331 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~rg--~-~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~ 331 (402)
+|||+|||+|+++..++++ |+ .|+++| ++.+++.+.++. + +... ..+....+.+||.|++..+|+|+
T Consensus 170 rVLDIGcG~G~~a~~la~~~g~-----~V~giDlS~~~l~~A~~~~~~l~v~~~---~~D~~~l~~~fD~Ivs~~~~ehv 241 (383)
T PRK11705 170 RVLDIGCGWGGLARYAAEHYGV-----SVVGVTISAEQQKLAQERCAGLPVEIR---LQDYRDLNGQFDRIVSVGMFEHV 241 (383)
T ss_pred EEEEeCCCccHHHHHHHHHCCC-----EEEEEeCCHHHHHHHHHHhccCeEEEE---ECchhhcCCCCCEEEEeCchhhC
Confidence 5999999999999999976 44 677777 577888777653 2 1111 12222335799999999999998
Q ss_pred cccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 332 SKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 332 ~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
.+ .++..++.++.|+|||||++++.+
T Consensus 242 g~-~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 242 GP-KNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred Ch-HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 64 356799999999999999999974
No 85
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.14 E-value=1.4e-10 Score=105.66 Aligned_cols=103 Identities=14% Similarity=0.025 Sum_probs=75.5
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHH------------HcCCCcEEEeccccCCCCC-CCC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFAL------------ERGAPAMVAAFATRRLPYP-SQA 74 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~------------~~~~~~~~~~~d~~~lp~~-~~s 74 (402)
++.+|||+|||.|..+..|+++ .|+|+|+|+..+..++.+... .++....+.++|...++.. .+.
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~ 113 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP 113 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence 5579999999999999999988 899999999877643211100 0122334567777666532 357
Q ss_pred eeEEEecCcccccccCh-HHHHHHHHHhcCCCeEEEEEe
Q 015704 75 FDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 75 fDlI~s~~~~~~~~~d~-~~~l~e~~r~LkpgG~li~~~ 112 (402)
||.|+...+++|+.++. ...++.+.++|||||.+++.+
T Consensus 114 fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 114 VDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred cCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 99999877777776554 679999999999999866664
No 86
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.14 E-value=5.7e-11 Score=109.88 Aligned_cols=97 Identities=19% Similarity=0.284 Sum_probs=72.0
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc--ccccccCCCCCCCCC-CcccEEEEccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL--IGVMHDWCEPFDTYP-RTYDLLHAAGLFSVE 331 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~--~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~ 331 (402)
..|||+|||+|.++..|++.+..+ .++.+| ++.+++.+.++.. +..+..-.+.++ ++ ++||+|+|+.+++|.
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~---~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~vi~~~~l~~~ 111 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQA---EFIALDISAGMLAQAKTKLSENVQFICGDAEKLP-LEDSSFDLIVSNLALQWC 111 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCC---cEEEEeChHHHHHHHHHhcCCCCeEEecchhhCC-CCCCceeEEEEhhhhhhc
Confidence 569999999999999999986432 355555 4566666655532 223333233433 45 899999999999997
Q ss_pred cccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 332 SKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 332 ~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
.+ +..+|.++.|+|||||++++.+.
T Consensus 112 ~~---~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 112 DD---LSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred cC---HHHHHHHHHHHcCCCcEEEEEeC
Confidence 64 68999999999999999999863
No 87
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.13 E-value=1.9e-10 Score=104.28 Aligned_cols=95 Identities=17% Similarity=0.117 Sum_probs=70.7
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
++.+|||+|||+|.++..+.+. .++|+|+++.++. .++++.....+...++.. |+++++||+|+++.+++
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~-----~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~ 116 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVE-----KAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLI 116 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHH-----HHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhh
Confidence 5678999999999988877653 6888988876664 343332233455566666 88889999999998877
Q ss_pred ccccC-hHHHHHHHHHhcCCCeEEEEEe
Q 015704 86 NWTRD-DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 86 ~~~~d-~~~~l~e~~r~LkpgG~li~~~ 112 (402)
|+.++ ...+++++.|++ ++++++..
T Consensus 117 hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 117 HINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred hCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 87533 478999999998 46777764
No 88
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.13 E-value=2.7e-10 Score=106.61 Aligned_cols=102 Identities=21% Similarity=0.228 Sum_probs=77.4
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHc-CCCc-E-EEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALER-GAPA-M-VAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~-~~~~-~-~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
-.+++|||||||+|.++..++.+ .|+|+|.+..... +...+++. +... . .....++.+|. .++||+|+|..
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~--QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MG 190 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYL--QFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMG 190 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHH--HHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEee
Confidence 46789999999999999888766 6889988765432 22333322 2222 2 22246788887 78999999998
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
++.|.. +|-..|.+++..|+|||.+++.|..
T Consensus 191 VLYHrr-~Pl~~L~~Lk~~L~~gGeLvLETlv 221 (315)
T PF08003_consen 191 VLYHRR-SPLDHLKQLKDSLRPGGELVLETLV 221 (315)
T ss_pred ehhccC-CHHHHHHHHHHhhCCCCEEEEEEee
Confidence 877755 9999999999999999999998753
No 89
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.13 E-value=6.6e-11 Score=103.96 Aligned_cols=103 Identities=26% Similarity=0.446 Sum_probs=75.8
Q ss_pred cccccCCCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-CCCCCCeeEE
Q 015704 3 QINTWIRLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-PYPSQAFDLI 78 (402)
Q Consensus 3 li~~~~~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~l-p~~~~sfDlI 78 (402)
.|..+-.++.+|||+|||.|.+..+|.+. ...|+|+++ +.+..+.++|++......+ +.+ .|++++||.|
T Consensus 6 ~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~-----~~v~~cv~rGv~Viq~Dld-~gL~~f~d~sFD~V 79 (193)
T PF07021_consen 6 IIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDP-----DNVAACVARGVSVIQGDLD-EGLADFPDQSFDYV 79 (193)
T ss_pred HHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCH-----HHHHHHHHcCCCEEECCHH-HhHhhCCCCCccEE
Confidence 46667778899999999999999999874 456677665 3446677788775444433 344 3899999999
Q ss_pred EecCcccccccChHHHHHHHHHhcCCCeEEEEEeCCCC
Q 015704 79 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVY 116 (402)
Q Consensus 79 ~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~~~ 116 (402)
+.+.+ ++...+|..+|+|+.|+ |...+++ +|+.
T Consensus 80 Ilsqt-LQ~~~~P~~vL~EmlRV---gr~~IVs-FPNF 112 (193)
T PF07021_consen 80 ILSQT-LQAVRRPDEVLEEMLRV---GRRAIVS-FPNF 112 (193)
T ss_pred ehHhH-HHhHhHHHHHHHHHHHh---cCeEEEE-ecCh
Confidence 99887 44455899999999777 5566666 5544
No 90
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.13 E-value=4.8e-10 Score=99.68 Aligned_cols=96 Identities=21% Similarity=0.227 Sum_probs=71.5
Q ss_pred CCCeEEEECCccchhHHHHcc----CCceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~----~~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
++.+|||+|||+|.++..++. ..++++|.++.++..+. +.+++.+.. ..+...|++.++ ..++||+|+|+.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~-~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-- 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLR-EVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-- 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHH-HHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh--
Confidence 467999999999988777653 26999999998775554 334444543 446667777664 357899999764
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
. .+...+++.+.++|+|||.+++..
T Consensus 118 ~---~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 118 L---ASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred h---hCHHHHHHHHHHhcCCCCEEEEEc
Confidence 2 256678899999999999999884
No 91
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.13 E-value=1.6e-10 Score=109.24 Aligned_cols=100 Identities=22% Similarity=0.334 Sum_probs=70.8
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
+++.+|||||||.|.++..++++ .|+++.+|......+. +.+++.++. ..+...|..+++ .+||.|+|..+
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~-~~~~~~gl~~~v~v~~~D~~~~~---~~fD~IvSi~~ 136 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYAR-ERIREAGLEDRVEVRLQDYRDLP---GKFDRIVSIEM 136 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHH-HHHHCSTSSSTEEEEES-GGG------S-SEEEEESE
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHH-HHHHhcCCCCceEEEEeeccccC---CCCCEEEEEec
Confidence 46789999999999999999887 7888888765554433 344455654 335555655554 38999999999
Q ss_pred cccccc-ChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTR-DDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~-d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+.|... +...+++++.++|||||.+++.+
T Consensus 137 ~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 137 FEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp GGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred hhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 888853 46899999999999999999875
No 92
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.12 E-value=2e-10 Score=111.26 Aligned_cols=120 Identities=17% Similarity=0.166 Sum_probs=85.3
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc---ccccccCCCCCCCCC-CcccEEEEcccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL---IGVMHDWCEPFDTYP-RTYDLLHAAGLFSV 330 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~---~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~ 330 (402)
.+|||+|||+|.++..+++... ..+|+.+| ++++++.+.++.- +..++...+.+ +|+ ++||+|++.++++|
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~---~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~l-p~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVD---AKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDL-PFPTDYADRYVSAGSIEY 190 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhC-CCCCCceeEEEEcChhhh
Confidence 3699999999999988877521 12566666 5677877766521 33344333443 356 79999999999999
Q ss_pred ccccCCHHHHHHHhhhhccCCcEEEEEeChh-----------------hHHHHHHHHHhcCceEEEeec
Q 015704 331 ESKRCNMSTIMLEMDRMLRPGGHVYIRDSID-----------------VMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 331 ~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~-----------------~~~~~~~~~~~~~w~~~~~~~ 382 (402)
+.+ +..+|.|+.|+|||||.+++.+... ..+.+.+.+++..++.....+
T Consensus 191 ~~d---~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 191 WPD---PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred CCC---HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 775 5789999999999999998875321 235666777777787554433
No 93
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.12 E-value=1.3e-11 Score=98.90 Aligned_cols=93 Identities=20% Similarity=0.280 Sum_probs=65.6
Q ss_pred EEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC----c-ccccccCCCCCCCCC-CcccEEEEc-cccc
Q 015704 258 VLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----L-IGVMHDWCEPFDTYP-RTYDLLHAA-GLFS 329 (402)
Q Consensus 258 vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg----~-~~~~~~~~~~~~~~~-~sfD~v~~~-~~~~ 329 (402)
|||+|||+|..+..+++.........++++| +++++..+.++. . +..++.-.+.++ ++ ++||+|+|+ .++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~-~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLP-FSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHH-HHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCc-ccCCCeeEEEEcCCccC
Confidence 7999999999999999773100124788888 678888887776 3 344444344433 33 699999995 5599
Q ss_pred cccccCCHHHHHHHhhhhccCCc
Q 015704 330 VESKRCNMSTIMLEMDRMLRPGG 352 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpgG 352 (402)
|+.+ ...+.+|.++.++|||||
T Consensus 80 ~~~~-~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSP-EELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSH-HHHHHHHHHHHHTEEEEE
T ss_pred CCCH-HHHHHHHHHHHHHhCCCC
Confidence 9774 467899999999999998
No 94
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.12 E-value=8.1e-10 Score=98.12 Aligned_cols=100 Identities=19% Similarity=0.153 Sum_probs=73.5
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
++.+|||+|||+|.++..++.. .++++|+++.++..+.... ...+....+...|....+ .++||+|+++..+++.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENA-KLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPL 95 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHH-HHcCCceEEEEccccccc--CCcccEEEECCCCCCC
Confidence 4578999999999999888876 5899999998876665333 334444445555654433 4589999998776554
Q ss_pred ccC--------------------hHHHHHHHHHhcCCCeEEEEEe
Q 015704 88 TRD--------------------DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 88 ~~d--------------------~~~~l~e~~r~LkpgG~li~~~ 112 (402)
..+ ...+++++.++|+|||.+++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 321 2467999999999999999985
No 95
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.12 E-value=2.7e-10 Score=108.94 Aligned_cols=101 Identities=18% Similarity=0.174 Sum_probs=71.7
Q ss_pred ccCCCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcE--EEeccccCCCCCCCCeeEEEe
Q 015704 6 TWIRLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAM--VAAFATRRLPYPSQAFDLIHC 80 (402)
Q Consensus 6 ~~~~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~--~~~~d~~~lp~~~~sfDlI~s 80 (402)
.+..++.+|||+|||+|.++..++.. .++++|+++.++..+. +.+..++.... ....+ ..+..+++||+|++
T Consensus 155 ~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~-~n~~~n~~~~~~~~~~~~--~~~~~~~~fDlVva 231 (288)
T TIGR00406 155 DLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESAR-KNAELNQVSDRLQVKLIY--LEQPIEGKADVIVA 231 (288)
T ss_pred hhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHH-HHHHHcCCCcceEEEecc--cccccCCCceEEEE
Confidence 34456789999999999888776643 6899999998886665 33444444332 22222 23344678999998
Q ss_pred cCcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 81 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+.. . .....++.++.++|||||+++++..
T Consensus 232 n~~-~---~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 232 NIL-A---EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred ecC-H---HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 754 2 1346789999999999999999963
No 96
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.11 E-value=1.7e-10 Score=104.54 Aligned_cols=93 Identities=18% Similarity=0.162 Sum_probs=71.0
Q ss_pred ceEEeccccchHHHHHHhhc--CCCceEEEeccCC-CCCChhhHHhcCc-ccccccCCCCCCCCC-CcccEEEEcccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYP-RTYDLLHAAGLFSV 330 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~--~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~ 330 (402)
..|||+|||+|.++..|++. +. +++++| ++++++.+.++.- +..++.... .+++ ++||+|+|..+|+|
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~~-----~v~giDiS~~~l~~A~~~~~~~~~~~~d~~--~~~~~~sfD~V~~~~vL~h 117 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFK-----HIYGVEINEYAVEKAKAYLPNINIIQGSLF--DPFKDNFFDLVLTKGVLIH 117 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCCC-----eEEEEECCHHHHHHHHhhCCCCcEEEeecc--CCCCCCCEEEEEECChhhh
Confidence 45999999999999999886 33 677777 6788888877422 223332222 2566 79999999999999
Q ss_pred ccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 331 ESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 331 ~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+. +.++..++.||.|++ ++++++.+
T Consensus 118 l~-p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 118 IN-PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred CC-HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 96 456789999999998 57888875
No 97
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.11 E-value=1.4e-10 Score=109.33 Aligned_cols=129 Identities=16% Similarity=0.234 Sum_probs=84.1
Q ss_pred hhhHHhhHHHHHHHHHHHHhc-c-cCCCCcceEEeccccchH----HHHHHhhcCCC--ceEEEeccCC-CCCChhhHHh
Q 015704 228 ELFKAESKYWNEIIESYVRAL-H-WKKMKLRNVLDMRAGFGG----FAAALIEQKFD--CWVMNVVPVS-GFNTLPVIYD 298 (402)
Q Consensus 228 ~~~~~~~~~w~~~~~~y~~~~-~-~~~~~~~~vLD~g~g~G~----~~~~l~~~~~~--~~~~~v~~~~-~~~~~~~~~~ 298 (402)
..|-++...|....+.....+ . ...++--+|+|+|||+|. +|..|++.+.. -+...|+++| ++.+++.|.+
T Consensus 71 T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~ 150 (264)
T smart00138 71 TRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARA 150 (264)
T ss_pred CcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHc
Confidence 445555566665555433221 1 112233469999999995 56566654321 1345788888 6788887765
Q ss_pred cCc----------------------------------ccc-cccCCCCCCCCC-CcccEEEEccccccccccCCHHHHHH
Q 015704 299 RGL----------------------------------IGV-MHDWCEPFDTYP-RTYDLLHAAGLFSVESKRCNMSTIML 342 (402)
Q Consensus 299 rg~----------------------------------~~~-~~~~~~~~~~~~-~sfD~v~~~~~~~~~~~~~~~~~~l~ 342 (402)
. . +.. .|+..+ +++| ++||+|+|.+||.|+++ .+...++.
T Consensus 151 ~-~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~--~~~~~~~fD~I~crnvl~yf~~-~~~~~~l~ 226 (264)
T smart00138 151 G-IYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLA--ESPPLGDFDLIFCRNVLIYFDE-PTQRKLLN 226 (264)
T ss_pred C-CCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCC--CCCccCCCCEEEechhHHhCCH-HHHHHHHH
Confidence 2 1 111 223222 2345 79999999999999974 34568999
Q ss_pred HhhhhccCCcEEEEEeCh
Q 015704 343 EMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 343 e~~RvLrpgG~~~~~~~~ 360 (402)
++.|+|||||++++-...
T Consensus 227 ~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 227 RFAEALKPGGYLFLGHSE 244 (264)
T ss_pred HHHHHhCCCeEEEEECcc
Confidence 999999999999998655
No 98
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.11 E-value=3.2e-10 Score=106.03 Aligned_cols=105 Identities=16% Similarity=0.235 Sum_probs=80.4
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
+++.+|||||||.|.++.+++++ .|+|+++|......+. +.+++.+.. ..+...|..++ .+.||-|+|..+
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~-~r~~~~gl~~~v~v~l~d~rd~---~e~fDrIvSvgm 146 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAE-KRIAARGLEDNVEVRLQDYRDF---EEPFDRIVSVGM 146 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHH-HHHHHcCCCcccEEEecccccc---ccccceeeehhh
Confidence 47889999999999999999876 7889999887766555 444456665 23334444444 345999999999
Q ss_pred ccccccC-hHHHHHHHHHhcCCCeEEEEEeCCCCC
Q 015704 84 RINWTRD-DGILLLEVNRMLRAGGYFAWAAQPVYK 117 (402)
Q Consensus 84 ~~~~~~d-~~~~l~e~~r~LkpgG~li~~~~~~~~ 117 (402)
+.|+... ...+|+.+.++|+|||.+++-+.....
T Consensus 147 fEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 147 FEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred HHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 8888754 589999999999999999998654444
No 99
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.10 E-value=2e-10 Score=101.17 Aligned_cols=101 Identities=20% Similarity=0.311 Sum_probs=68.8
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
...++||+|||.|.++..|+.+ .++++|+++..+..+..+.+. .....+...++... .|+++||+|+++.+++++
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL 119 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG--LPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYL 119 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT----SS-EEEEEEES-GGGS
T ss_pred ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCC-CCCCCeeEEEEehHhHcC
Confidence 3468999999999999999988 889999987665444322211 12234566665443 467899999999987776
Q ss_pred cc--ChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 88 TR--DDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 88 ~~--d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.+ +...++..+...|+|||.+++.+.
T Consensus 120 ~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 120 DDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp SSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 53 346789999999999999999863
No 100
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.09 E-value=1.3e-10 Score=101.85 Aligned_cols=96 Identities=17% Similarity=0.224 Sum_probs=70.9
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC-----c-cc-ccccCCCCCCCCC-CcccEEEEccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG-----L-IG-VMHDWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg-----~-~~-~~~~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
.||.+|||+|.---++-... ...|+.+| +++|-+++..+- + +. .++...|.++..+ .|+|.|+|.-+
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p----~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKP----INSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred ceEEecccCCCCcccccCCC----CceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 38999999998776665331 12555555 356665544331 1 33 6777788888888 79999999888
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
|--.. +++.+|+|+.|+|||||.+++-+-
T Consensus 155 LCSve---~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 155 LCSVE---DPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred EeccC---CHHHHHHHHHHhcCCCcEEEEEec
Confidence 75533 579999999999999999999864
No 101
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.08 E-value=1e-09 Score=97.45 Aligned_cols=132 Identities=14% Similarity=0.127 Sum_probs=89.6
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-ccccccCCCCCCCCCCcccEEEEccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEPFDTYPRTYDLLHAAGLFS 329 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~~~~~~~~~~~~sfD~v~~~~~~~ 329 (402)
.+|||+|||+|.++..++..+. .|+.+| ++.+++.+.++ ++ +..++.-.. ...+.+||+|++...+.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~--~~~~~~fD~Vi~n~p~~ 93 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK-----CILTTDINPFAVKELRENAKLNNVGLDVVMTDLF--KGVRGKFDVILFNPPYL 93 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC-----EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccc--cccCCcccEEEECCCCC
Confidence 3599999999999999999874 566666 45566544442 22 222322111 11237999999998776
Q ss_pred cccccC------------------CHHHHHHHhhhhccCCcEEEEEeChhh-HHHHHHHHHhcCceEEEeecCCCCCCce
Q 015704 330 VESKRC------------------NMSTIMLEMDRMLRPGGHVYIRDSIDV-MDELQEIGKAMGWHVTLRETAEGPHASY 390 (402)
Q Consensus 330 ~~~~~~------------------~~~~~l~e~~RvLrpgG~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 390 (402)
+..+.. .+..+|.++.|+|||||.+++.+.... ...+.+.+++..|+........ -+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~---~~~ 170 (179)
T TIGR00537 94 PLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERG---LFF 170 (179)
T ss_pred CCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEee---cCc
Confidence 654310 145789999999999999999876544 6677788888888888776532 244
Q ss_pred EEEEEEe
Q 015704 391 RILTADK 397 (402)
Q Consensus 391 ~~l~~~k 397 (402)
.-|++-|
T Consensus 171 ~~~~~~~ 177 (179)
T TIGR00537 171 EELFAIK 177 (179)
T ss_pred eEEEEEE
Confidence 4555555
No 102
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.08 E-value=2.3e-10 Score=101.79 Aligned_cols=116 Identities=15% Similarity=0.298 Sum_probs=77.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHH----hcCc--ccccccCCCCCCCCCCcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIY----DRGL--IGVMHDWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~----~rg~--~~~~~~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
.+|||+|||+|.++..|+..+. ...|+++| ++++++.+. +.|+ +..++...+.++ .+++||+|+|.. +
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~---~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~ 118 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARP---ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L 118 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCC---CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h
Confidence 3699999999999998876542 12566666 455554332 2344 444444344432 247999999975 2
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHh---cCceEEEeec
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKA---MGWHVTLRET 382 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~---~~w~~~~~~~ 382 (402)
.++..++.++.|+|||||.+++.........+..+.++ ..-+....+.
T Consensus 119 ------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 169 (181)
T TIGR00138 119 ------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPP 169 (181)
T ss_pred ------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccc
Confidence 23568899999999999999999877666666666666 3344444443
No 103
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.08 E-value=7.2e-10 Score=101.70 Aligned_cols=98 Identities=21% Similarity=0.269 Sum_probs=73.3
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
++.+|||+|||+|.++..++.. .++++|+++.++..+..+. ...+. ...+...|+..++ ++||+|+++.+++
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~-~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~ 130 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRA-QGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLI 130 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-HhcCCCCceEEEECChhhCC---CCcCEEEEhhHHH
Confidence 4679999999999999988865 7899999988876665333 22332 3345666666654 7899999988877
Q ss_pred cccc-ChHHHHHHHHHhcCCCeEEEEE
Q 015704 86 NWTR-DDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 86 ~~~~-d~~~~l~e~~r~LkpgG~li~~ 111 (402)
|+.. +...+++++.+++++++++.+.
T Consensus 131 ~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 131 HYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 7753 3578899999999987766654
No 104
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.07 E-value=3.8e-10 Score=107.02 Aligned_cols=95 Identities=16% Similarity=0.179 Sum_probs=67.6
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-ccccccCCCCCCCCC-CcccEEEEccccccc
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYP-RTYDLLHAAGLFSVE 331 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~ 331 (402)
..+|||+|||+|.++..|++...+.....|+++| ++++++.+.++.- +..+....+.+ +|+ ++||+|++...
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~l-p~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRL-PFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccC-CCcCCceeEEEEecC----
Confidence 3569999999999999998763221123678888 6788888877642 33333223343 466 79999998521
Q ss_pred cccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 332 SKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 332 ~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
...+.|+.|+|||||++++..+.
T Consensus 161 ------~~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 161 ------PCKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred ------CCCHHHHHhhccCCCEEEEEeCC
Confidence 13468999999999999998765
No 105
>PRK06922 hypothetical protein; Provisional
Probab=99.07 E-value=9.6e-11 Score=120.37 Aligned_cols=101 Identities=15% Similarity=0.222 Sum_probs=73.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC----c-ccccccCCCCCCC-CC-CcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----L-IGVMHDWCEPFDT-YP-RTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg----~-~~~~~~~~~~~~~-~~-~sfD~v~~~~~ 327 (402)
.+|||+|||+|.++..|+++. ...+|+++| ++.|++.+.++. . +..+...+..++. |+ ++||+|+++.+
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~---P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEET---EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhC---CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 469999999999999998763 234777777 567787776542 1 2223333334442 56 89999999988
Q ss_pred ccccc----------ccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 328 FSVES----------KRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 328 ~~~~~----------~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
++|+. +..++..+|.++.|+|||||.+++.|.
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 87652 123568999999999999999999974
No 106
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.07 E-value=2.5e-10 Score=106.70 Aligned_cols=106 Identities=25% Similarity=0.414 Sum_probs=78.9
Q ss_pred HhcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChh----hHHhcCcccccccCCCCCCCCCCccc
Q 015704 246 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLP----VIYDRGLIGVMHDWCEPFDTYPRTYD 320 (402)
Q Consensus 246 ~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~----~~~~rg~~~~~~~~~~~~~~~~~sfD 320 (402)
+.+.+.+|. +|||||||.|+++.++|++. +| +|++++ |.++.. .+.++|+-..++-..++..+++..||
T Consensus 66 ~kl~L~~G~--~lLDiGCGWG~l~~~aA~~y-~v---~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fD 139 (283)
T COG2230 66 EKLGLKPGM--TLLDIGCGWGGLAIYAAEEY-GV---TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFD 139 (283)
T ss_pred HhcCCCCCC--EEEEeCCChhHHHHHHHHHc-CC---EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccc
Confidence 445666664 39999999999999999983 23 555555 445553 45566884344333344456666699
Q ss_pred EEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 321 LLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 321 ~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
-|+|-.+|+|+.. .+....+.-++++|+|||.+++-.
T Consensus 140 rIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 140 RIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred eeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEEE
Confidence 9999999999984 578899999999999999999863
No 107
>PRK14967 putative methyltransferase; Provisional
Probab=99.07 E-value=8.9e-10 Score=101.41 Aligned_cols=101 Identities=19% Similarity=0.147 Sum_probs=70.8
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
++.+|||+|||+|.++..++.. .++++|+++.++..+. +.+...+....+...|... .+++++||+|+++..+..
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~-~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSAR-LNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHH-HHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCC
Confidence 4579999999999988877653 6899999987775554 3333344444455556543 345678999999854332
Q ss_pred cccC--------------------hHHHHHHHHHhcCCCeEEEEEe
Q 015704 87 WTRD--------------------DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 87 ~~~d--------------------~~~~l~e~~r~LkpgG~li~~~ 112 (402)
-... ...+++++.++|||||.+++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~ 159 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ 159 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2110 2457888999999999999874
No 108
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.07 E-value=7.3e-10 Score=108.89 Aligned_cols=100 Identities=17% Similarity=0.217 Sum_probs=69.8
Q ss_pred CCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC----cEEEeccccCCCCCCCCeeEEEecC
Q 015704 11 LRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP----AMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~----~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
..+|||+|||+|.++..++++ .++++|+++.++..++... ...+.. ..+...|... .+++++||+|+||.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~-~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNP 306 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNV-ETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNP 306 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCcccCceEEEEEccccc-cCCCCCEEEEEECc
Confidence 359999999999999888764 7999999987776655333 233321 2333334321 13446899999987
Q ss_pred cccccc--cC--hHHHHHHHHHhcCCCeEEEEEe
Q 015704 83 CRINWT--RD--DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 83 ~~~~~~--~d--~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.++.-. .+ ..++++++.++|+|||.+++..
T Consensus 307 Pfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 307 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 754321 11 2578999999999999999995
No 109
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.06 E-value=1.1e-09 Score=90.42 Aligned_cols=98 Identities=18% Similarity=0.105 Sum_probs=69.3
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccC-CCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRR-LPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~-lp~~~~sfDlI~s~~~ 83 (402)
++.+|||+|||+|.++..+++. .++++|+++..+..+.. .+...+.. ..+...+... ++...++||.|++...
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIER-NARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHH-HHHHhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence 4569999999999998888764 68999999877765553 33333333 3344444433 3333468999998643
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
. .....+++++.+.|+|||.+++..
T Consensus 98 ~----~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 98 G----GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred c----hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 1 134689999999999999999874
No 110
>PRK08317 hypothetical protein; Provisional
Probab=99.06 E-value=4.3e-10 Score=103.87 Aligned_cols=98 Identities=24% Similarity=0.382 Sum_probs=71.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc--Cc---ccccccCCCCCCCCC-CcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR--GL---IGVMHDWCEPFDTYP-RTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r--g~---~~~~~~~~~~~~~~~-~sfD~v~~~~~~ 328 (402)
.+|||+|||.|.++..+++... ...+++.+| ++.+++.+..+ +. +.....-.+.+ +++ .+||+|++.+++
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~--~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVG--PEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGL-PFPDGSFDAVRSDRVL 97 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcC--CCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccC-CCCCCCceEEEEechh
Confidence 4699999999999999987631 112566666 56667777665 11 22222222222 355 799999999999
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
+|+.+ +..++.++.++|||||++++.+.
T Consensus 98 ~~~~~---~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 98 QHLED---PARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred hccCC---HHHHHHHHHHHhcCCcEEEEEec
Confidence 99875 68999999999999999998763
No 111
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.06 E-value=6.5e-08 Score=94.43 Aligned_cols=130 Identities=19% Similarity=0.226 Sum_probs=81.5
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCcccccccCCCCCCCCCCcccEEEEccccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVE 331 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~ 331 (402)
+|||+|||+|.++..+++++.. ..|+.+| +..+++.+.+ .++-..+.. ...+...+++||+|+|.--|++.
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~---~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~-~D~~~~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPK---IRLTLSDVSAAALESSRATLAANGLEGEVFA-SNVFSDIKGRFDMIISNPPFHDG 274 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCC---CEEEEEECCHHHHHHHHHHHHHcCCCCEEEE-cccccccCCCccEEEECCCccCC
Confidence 5999999999999999988532 2455665 4455554433 243222211 11122234799999998877653
Q ss_pred cc--cCCHHHHHHHhhhhccCCcEEEEEeCh--hhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEec
Q 015704 332 SK--RCNMSTIMLEMDRMLRPGGHVYIRDSI--DVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADKR 398 (402)
Q Consensus 332 ~~--~~~~~~~l~e~~RvLrpgG~~~~~~~~--~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 398 (402)
.+ ....+.++.++.|.|||||.++|-.+. --...+++.... .++...+ .+.+|+-++|.
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~--~~~la~~------~~f~v~~a~~~ 337 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGS--HEVLAQT------GRFKVYRAIMT 337 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCC--eEEEEeC------CCEEEEEEEcc
Confidence 21 123578999999999999999987643 113344444432 2444322 36889888873
No 112
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=7.8e-10 Score=103.70 Aligned_cols=126 Identities=19% Similarity=0.191 Sum_probs=84.1
Q ss_pred CCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCCCCCeeEEEecCccc
Q 015704 11 LRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
..+|||+|||.|.++..+++. .++-+|++...+..++ .....++... .+...+ ...+..+ +||+|+||..++
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar-~Nl~~N~~~~~~v~~s~-~~~~v~~-kfd~IisNPPfh 235 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESAR-KNLAANGVENTEVWASN-LYEPVEG-KFDLIISNPPFH 235 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHH-HhHHHcCCCccEEEEec-ccccccc-cccEEEeCCCcc
Confidence 348999999999999988875 6777888876665554 3444455555 333333 2233333 999999998866
Q ss_pred ccccCh----HHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHHHHHhhhhhccee
Q 015704 86 NWTRDD----GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWE 139 (402)
Q Consensus 86 ~~~~d~----~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~~~~~~~~~~~~~ 139 (402)
.-..-. .+++.+..+.|++||.|.+...........+.+.|...+.+++.-+|.
T Consensus 236 ~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg~v~~la~~~gf~ 293 (300)
T COG2813 236 AGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFGNVEVLAKNGGFK 293 (300)
T ss_pred CCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcCCEEEEEeCCCEE
Confidence 543222 388999999999999999997533344455566665555444444443
No 113
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.05 E-value=1.2e-09 Score=99.46 Aligned_cols=93 Identities=16% Similarity=0.133 Sum_probs=67.9
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC--------CCCCCe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--------YPSQAF 75 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp--------~~~~sf 75 (402)
.++.+|||+|||+|.++..+++. .|+++|+++. . ......+..+|+...+ +.+++|
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-~----------~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-D----------PIVGVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-c----------CCCCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 45679999999999998887664 6899999871 1 1112446666766642 567899
Q ss_pred eEEEecCcccccccCh-----------HHHHHHHHHhcCCCeEEEEEeC
Q 015704 76 DLIHCSRCRINWTRDD-----------GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 76 DlI~s~~~~~~~~~d~-----------~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+|+|+.+ .++..++ ..+++++.++|||||.|++..+
T Consensus 119 D~V~S~~~-~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 119 QVVMSDMA-PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CEEecCCC-CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99998643 4444332 3588999999999999999864
No 114
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=2.9e-10 Score=107.14 Aligned_cols=105 Identities=22% Similarity=0.318 Sum_probs=74.7
Q ss_pred cccccCCCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCC-CCeeEE
Q 015704 3 QINTWIRLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPS-QAFDLI 78 (402)
Q Consensus 3 li~~~~~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~-~sfDlI 78 (402)
.+..+.+++.+|||+|||+|-++...+.. .++|+|+++..+..++ +.++.++............+..+. ++||+|
T Consensus 155 ~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~-eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvI 233 (300)
T COG2264 155 ALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAAR-ENARLNGVELLVQAKGFLLLEVPENGPFDVI 233 (300)
T ss_pred HHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHH-HHHHHcCCchhhhcccccchhhcccCcccEE
Confidence 34556678999999999999877666543 7999999998886665 666666665311111111222233 589999
Q ss_pred EecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 79 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 79 ~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
++|-.+. -...+..++.+.|||||++++|.
T Consensus 234 VANILA~----vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 234 VANILAE----VLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred EehhhHH----HHHHHHHHHHHHcCCCceEEEEe
Confidence 9985321 23688899999999999999996
No 115
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.05 E-value=9.6e-10 Score=107.67 Aligned_cols=101 Identities=17% Similarity=0.273 Sum_probs=78.0
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCC--CCCCCCeeEEEecC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRL--PYPSQAFDLIHCSR 82 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~~l--p~~~~sfDlI~s~~ 82 (402)
.+..+||||||+|.++..++.+ .++|+|++..++..+. +.+...++.+. +...|+..+ .++++++|.|+++.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~-~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVL-KQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHH-HHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 4568999999999999888864 7999999998887666 44455565543 566665443 47789999999865
Q ss_pred cccccccCh------HHHHHHHHHhcCCCeEEEEEe
Q 015704 83 CRINWTRDD------GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 83 ~~~~~~~d~------~~~l~e~~r~LkpgG~li~~~ 112 (402)
. .+|.... ..++.+++|+|+|||.+.+.|
T Consensus 201 P-dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 201 P-VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred C-CCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 4 5565332 578999999999999999997
No 116
>PRK06202 hypothetical protein; Provisional
Probab=99.04 E-value=5e-10 Score=103.69 Aligned_cols=99 Identities=11% Similarity=0.163 Sum_probs=70.6
Q ss_pred CcceEEeccccchHHHHHHhhc----CCCceEEEeccCC-CCCChhhHHhcCc---ccccccCCCCCCCCCCcccEEEEc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQ----KFDCWVMNVVPVS-GFNTLPVIYDRGL---IGVMHDWCEPFDTYPRTYDLLHAA 325 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~----~~~~~~~~v~~~~-~~~~~~~~~~rg~---~~~~~~~~~~~~~~~~sfD~v~~~ 325 (402)
+-.+|||+|||+|.++..|++. | ...+|+++| ++++++.+.++.. +......++.++.-+++||+|+|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDG---LRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCC---CCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEEC
Confidence 4457999999999998888752 3 234788888 6888988877632 122222223333323799999999
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
.+|+|+.+. +...+|.||.|++| |.+++.|
T Consensus 137 ~~lhh~~d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 137 HFLHHLDDA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred CeeecCChH-HHHHHHHHHHHhcC--eeEEEec
Confidence 999999863 35689999999999 5555554
No 117
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.04 E-value=2.6e-10 Score=108.19 Aligned_cols=95 Identities=20% Similarity=0.234 Sum_probs=68.0
Q ss_pred eEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCC-CcccEEEEccc
Q 015704 257 NVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
+|||+|||.|..+..++.. +. ...|+.+| ++.+++.+.++ |+ +..++...+.+ +++ ++||+|++..+
T Consensus 80 ~VLDiG~G~G~~~~~~a~~~g~---~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l-~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 80 TVLDLGSGGGFDCFLAARRVGP---TGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL-PVADNSVDVIISNCV 155 (272)
T ss_pred EEEEeCCCCCHHHHHHHHHhCC---CCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC-CCCCCceeEEEEcCc
Confidence 6999999999877665543 32 12466666 46777776654 32 22233223333 366 79999999999
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
++|..+ ...++.|+.|+|||||++++++
T Consensus 156 ~~~~~d---~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 156 INLSPD---KERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred ccCCCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 988764 5799999999999999999975
No 118
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.03 E-value=1.3e-09 Score=99.74 Aligned_cols=101 Identities=17% Similarity=0.203 Sum_probs=74.9
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
++.+|||+|||+|.++..+++. .++++|+++..+..+..... ......+...++..+++++++||+|+++..+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence 5679999999999988877653 57888888755543332211 1122345666777788777899999987764
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+...++..+++++.+.|+|||.+++...
T Consensus 117 -~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 117 -RNVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred -CCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 4455889999999999999999998754
No 119
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.03 E-value=1.1e-09 Score=105.42 Aligned_cols=160 Identities=17% Similarity=0.159 Sum_probs=92.1
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHc------CCCcEEEeccccCCCCCCCCeeEEEec
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALER------GAPAMVAAFATRRLPYPSQAFDLIHCS 81 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~------~~~~~~~~~d~~~lp~~~~sfDlI~s~ 81 (402)
++.+|||+|||+|.++..+++. .|+++|+++.++..+..+. ... .....+...|.+.+ +++||+|+|.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~-~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRA-KEALAALPPEVLPKFEANDLESL---SGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-HhcccccccccceEEEEcchhhc---CCCcCEEEEc
Confidence 4679999999999999888876 6999999998887666433 222 11223445554433 4789999999
Q ss_pred CcccccccCh-HHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHHHHHhhhhhcceeeeeccceEEEeecCCChhhhh
Q 015704 82 RCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYL 160 (402)
Q Consensus 82 ~~~~~~~~d~-~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
.+++|+..+. ..+++.+.+ +.+||. +++..+... . ...++.+... |. ........|..+..+...+
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~~p~~~-~---~~~l~~~g~~-----~~--g~~~~~r~y~~s~eel~~l 286 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLAS-LAEKRL-IISFAPKTL-Y---YDILKRIGEL-----FP--GPSKATRAYLHAEADVERA 286 (315)
T ss_pred CEEEecCHHHHHHHHHHHHh-hcCCEE-EEEeCCcch-H---HHHHHHHHhh-----cC--CCCcCceeeeCCHHHHHHH
Confidence 8888876543 345666665 455555 445333211 1 1111111110 10 0011122343344567778
Q ss_pred hhhcCCCCCCCCCCCCCCCcccccccce
Q 015704 161 NREAGTIPPLCDPDDNPDNVWYVDLKAC 188 (402)
Q Consensus 161 l~~aGf~~~~~~~~~~~~~~~y~~~~~~ 188 (402)
++++||.+..+. ......||.-+.+|
T Consensus 287 L~~AGf~v~~~~--~~~~~~y~~~l~~~ 312 (315)
T PLN02585 287 LKKAGWKVARRE--MTATQFYFSRLLEA 312 (315)
T ss_pred HHHCCCEEEEEE--EeecceeHHhhhhh
Confidence 999999754332 33334445544443
No 120
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.03 E-value=5e-10 Score=105.58 Aligned_cols=103 Identities=19% Similarity=0.272 Sum_probs=72.8
Q ss_pred CCCeEEEECCccch----hHHHHcc---------CCceEEeCCccchHHHHHHHH---HHcCC-----------------
Q 015704 10 LLRVVMDAGCGVAS----FGAYLLP---------RNVITMSIAPKDVHENQIQFA---LERGA----------------- 56 (402)
Q Consensus 10 ~~~~VLDiGcG~G~----~~~~L~~---------~~v~~vdi~~~~~~~a~~~~a---~~~~~----------------- 56 (402)
++.+|+|+|||+|. ++..+.+ ..++|+|+++.++..+....- .-++.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999995 3433332 268899999887765543110 00000
Q ss_pred -------CcEEEeccccCCCCCCCCeeEEEecCccccccc-ChHHHHHHHHHhcCCCeEEEEEe
Q 015704 57 -------PAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR-DDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 57 -------~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~~~-d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
...+...|+...+++.++||+|+|.++++|+.. +...++++++++|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 234556677777777889999999988777753 23689999999999999999984
No 121
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.02 E-value=8.1e-10 Score=109.50 Aligned_cols=99 Identities=21% Similarity=0.276 Sum_probs=72.1
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
.++.+|||||||+|.++..+++. .|+++|+++.++..+... + .+....+...|...+ +++||.|++..++.
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~-~--~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~e 239 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQER-C--AGLPVEIRLQDYRDL---NGQFDRIVSVGMFE 239 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-h--ccCeEEEEECchhhc---CCCCCEEEEeCchh
Confidence 35679999999999999888764 688899887666444322 1 123333444454443 47899999987766
Q ss_pred cccc-ChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTR-DDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~-d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|... +...+++++.++|||||.+++.+.
T Consensus 240 hvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 240 HVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred hCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 6542 357899999999999999999863
No 122
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.02 E-value=1.5e-09 Score=97.08 Aligned_cols=132 Identities=17% Similarity=0.205 Sum_probs=84.8
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCCCcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
.+|||+|||+|.++..++.++.+ ..|+.+| ++.+++.+.++ ++ +..+.... ...++.+||+|++....
T Consensus 33 ~~vLDiG~G~G~~~~~la~~~~~---~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~--~~~~~~~~D~v~~~~~~ 107 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQFPS---LQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEA--PIELPGKADAIFIGGSG 107 (187)
T ss_pred CEEEEECCcCCHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCc--hhhcCcCCCEEEECCCc
Confidence 36999999999999999887421 2566665 34555555432 32 22222211 12345789999998654
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEe-ChhhHHHHHHHHHhcCceE-EEee------------cCCCCCCceEEEE
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRD-SIDVMDELQEIGKAMGWHV-TLRE------------TAEGPHASYRILT 394 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~-~~~~~~~~~~~~~~~~w~~-~~~~------------~~~~~~~~~~~l~ 394 (402)
. .+..++.++.|+|||||++++.. .......+.+++++..|+. ..+. .-+++..|.-+++
T Consensus 108 ~------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (187)
T PRK08287 108 G------NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDCVQLQVSSLTPLGAGHYFKPNNPTFIIS 181 (187)
T ss_pred c------CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceEEEEEEEeeeEcCcceeeccCCCEEEEE
Confidence 3 34678999999999999999976 3444666777787777752 2111 1133555666667
Q ss_pred EEec
Q 015704 395 ADKR 398 (402)
Q Consensus 395 ~~k~ 398 (402)
++|+
T Consensus 182 ~~~~ 185 (187)
T PRK08287 182 CQKE 185 (187)
T ss_pred EEcC
Confidence 7763
No 123
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.01 E-value=4.6e-10 Score=101.72 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=80.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCC-CCCCC-CC-CcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWC-EPFDT-YP-RTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~-~~~~~-~~-~sfD~v~~~ 325 (402)
.+|||+|||+|.++..|+++.. ..+|+++| ++.+++.+.++ ++ +..++... +.++. ++ .+||+|++.
T Consensus 42 ~~VLDiGcGtG~~~~~la~~~p---~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEMAKANP---DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CeEEEEccCCCHHHHHHHHHCC---CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 5699999999999999988632 12566766 56666655442 33 33344333 33332 55 799999986
Q ss_pred ccccc-----ccccCCHHHHHHHhhhhccCCcEEEEEe-ChhhHHHHHHHHHhcCceEEEee
Q 015704 326 GLFSV-----ESKRCNMSTIMLEMDRMLRPGGHVYIRD-SIDVMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 326 ~~~~~-----~~~~~~~~~~l~e~~RvLrpgG~~~~~~-~~~~~~~~~~~~~~~~w~~~~~~ 381 (402)
..... -..+.....+|.++.|+|||||++++.. .......+.+.+.+-.|.+...+
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~~~ 180 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVSEA 180 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccccccc
Confidence 43221 1111224789999999999999999975 44555566666666677777443
No 124
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.01 E-value=2.9e-09 Score=98.44 Aligned_cols=103 Identities=18% Similarity=0.236 Sum_probs=76.0
Q ss_pred CCCeEEEECCccchhHHHHcc-----CCceEEeCCccchHHHHHHHHHHc-CCCcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALER-GAPAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~-----~~v~~vdi~~~~~~~a~~~~a~~~-~~~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
++.+|||+|||+|.++..++. ..++++|+++..+..+........ .....+...|...++++.++||+|+++.+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 457999999999998877654 368899998876655543322211 12234566677777777789999998876
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++ ..++...+.++.++|+|||.+++...
T Consensus 131 l~~-~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 131 LRN-VPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred ccc-CCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 444 45889999999999999999988753
No 125
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.01 E-value=6.7e-11 Score=105.28 Aligned_cols=123 Identities=20% Similarity=0.208 Sum_probs=93.8
Q ss_pred cCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCccccc-ccCCCCCCC-C-CCcccEEEEc
Q 015704 250 WKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVM-HDWCEPFDT-Y-PRTYDLLHAA 325 (402)
Q Consensus 250 ~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~-~~~~~~~~~-~-~~sfD~v~~~ 325 (402)
...+.++.+||+|||+|-++..|.+.-. .++++| |.||+..|.++|+...+ +.-...|.. . ++.||+|.+.
T Consensus 121 ~~~g~F~~~lDLGCGTGL~G~~lR~~a~-----~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~Aa 195 (287)
T COG4976 121 ADLGPFRRMLDLGCGTGLTGEALRDMAD-----RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAA 195 (287)
T ss_pred ccCCccceeeecccCcCcccHhHHHHHh-----hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhh
Confidence 3456699999999999999999988754 788999 89999999999993222 111122332 2 3799999999
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEeCh----------------hhHHHHHHHHHhcCceEEEe
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI----------------DVMDELQEIGKAMGWHVTLR 380 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~----------------~~~~~~~~~~~~~~w~~~~~ 380 (402)
.||.|+.+ ++.++.=..+.|.|||.|++|... -....++..+.+-..++...
T Consensus 196 DVl~YlG~---Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~ 263 (287)
T COG4976 196 DVLPYLGA---LEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAI 263 (287)
T ss_pred hHHHhhcc---hhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEe
Confidence 99999885 588999999999999999999421 11446677777777776554
No 126
>PRK06202 hypothetical protein; Provisional
Probab=99.01 E-value=7e-10 Score=102.71 Aligned_cols=99 Identities=15% Similarity=0.185 Sum_probs=68.5
Q ss_pred CCCCeEEEECCccchhHHHHcc--------CCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP--------RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~--------~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s 80 (402)
.++.+|||+|||+|.++..|++ ..++++|+++.++..+... ....+ ..+...+.+.++.++++||+|+|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~-~~~~~--~~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARAN-PRRPG--VTFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhc-cccCC--CeEEEEecccccccCCCccEEEE
Confidence 3567999999999998877753 1688999988776544322 11112 23334455566667789999999
Q ss_pred cCcccccccC-hHHHHHHHHHhcCCCeEEEEEe
Q 015704 81 SRCRINWTRD-DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 81 ~~~~~~~~~d-~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+.+++|+.++ ...+++++.|+++ |.+++..
T Consensus 136 ~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 136 NHFLHHLDDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred CCeeecCChHHHHHHHHHHHHhcC--eeEEEec
Confidence 9887776532 3579999999998 5555553
No 127
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.99 E-value=2e-09 Score=92.72 Aligned_cols=116 Identities=20% Similarity=0.236 Sum_probs=84.4
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
....+|||+|||+|.+...|++. ..+|+|.++..+.-|+ ..|+..+.+ ..+.+.|+..-.+..+.||+|+--.
T Consensus 66 ~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~-niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 66 KQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQ-NIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKG 144 (227)
T ss_pred ccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHH-HHHHhcCCCcceeEEEeeccCCcccccceeEEeecC
Confidence 34459999999999999999876 4778888887776554 667777766 4577778766566678888887422
Q ss_pred cc--cccccC-----hHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHH
Q 015704 83 CR--INWTRD-----DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWK 127 (402)
Q Consensus 83 ~~--~~~~~d-----~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~ 127 (402)
.+ +.++++ +...+..+.++|+|||+|+|++ +..+..|+.+.+.
T Consensus 145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS--CN~T~dELv~~f~ 194 (227)
T KOG1271|consen 145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS--CNFTKDELVEEFE 194 (227)
T ss_pred ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe--cCccHHHHHHHHh
Confidence 21 112222 2457889999999999999995 7788888877653
No 128
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.99 E-value=1.8e-09 Score=96.63 Aligned_cols=136 Identities=14% Similarity=0.134 Sum_probs=75.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcCcccccc-cCCCCC------CCCC-CcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMH-DWCEPF------DTYP-RTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg~~~~~~-~~~~~~------~~~~-~sfD~v~~~~~ 327 (402)
.+|||+|||+|+++..++++... ...|..+|...+. ...++ ..+. +..+.- ..++ ++||+|++...
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~--~~~v~~vDis~~~---~~~~i-~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~ 107 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGG--KGRVIAVDLQPMK---PIENV-DFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAA 107 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCC--CceEEEEeccccc---cCCCc-eEEEeeCCChhHHHHHHHHhCCCCccEEEcCCC
Confidence 35999999999999998876321 1123444421111 11122 1121 221110 1245 68999998543
Q ss_pred --------cccccccCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcCceEEEeecCCC-CCCceEEEEEEe
Q 015704 328 --------FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTLRETAEG-PHASYRILTADK 397 (402)
Q Consensus 328 --------~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~l~~~k 397 (402)
+.|....++.+.+|.++.|+|||||++++.... .....+-..++..=|.+...+.-.+ ....|++++|+.
T Consensus 108 ~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (188)
T TIGR00438 108 PNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAKR 187 (188)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhceEEEeCCCCCCcccceEEEEEec
Confidence 222221223468999999999999999995321 1122222222222366666655444 444599999963
No 129
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.99 E-value=1.2e-09 Score=104.53 Aligned_cols=116 Identities=15% Similarity=0.176 Sum_probs=77.3
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----CcccccccCCCCCCCCC-CcccEEEEccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GLIGVMHDWCEPFDTYP-RTYDLLHAAGLFS 329 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~ 329 (402)
.+|||+|||+|.++..+++.|. ..|.++| ++.+++.+.++ ++-..+.........++ .+||+|+|..+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~----~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA----AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC----CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH
Confidence 4699999999999999888764 1566666 45666655543 22111111111123344 7999999974432
Q ss_pred cccccCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcCceEEEeec
Q 015704 330 VESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
+ +..++.++.|+|||||+++++.-. +..+.+.+.+++. |++....+
T Consensus 237 ~------l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~~~ 283 (288)
T TIGR00406 237 V------IKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEIRQ 283 (288)
T ss_pred H------HHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeEec
Confidence 2 357899999999999999999743 3455666766766 87765544
No 130
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.98 E-value=1.5e-09 Score=99.26 Aligned_cols=98 Identities=14% Similarity=0.055 Sum_probs=73.0
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCC----------------CcEEEeccccCCCCC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA----------------PAMVAAFATRRLPYP 71 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~----------------~~~~~~~d~~~lp~~ 71 (402)
++.+|||+|||.|..+..|+++ .|+|+|+++..+..++ ++++. ...+.++|+..++..
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~----~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFF----AENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHH----HHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 4569999999999999999987 8999999987775443 22222 233556676666432
Q ss_pred -CCCeeEEEecCcccccccCh-HHHHHHHHHhcCCCeEEEEE
Q 015704 72 -SQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 72 -~~sfDlI~s~~~~~~~~~d~-~~~l~e~~r~LkpgG~li~~ 111 (402)
.+.||+|+...+++++..+. ..+++.+.++|+|||.+++.
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 35899999877777776543 68999999999999975554
No 131
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.98 E-value=2.5e-09 Score=97.34 Aligned_cols=134 Identities=12% Similarity=0.115 Sum_probs=76.3
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcCcccccccCCCCCC-------CCC-CcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFD-------TYP-RTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg~~~~~~~~~~~~~-------~~~-~sfD~v~~~~~ 327 (402)
..|||+|||+|.++..++++..+ ...|+++|-..+... .++ ..++.-.+... .++ .+||+|+|.-.
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~--~~~V~aVDi~~~~~~---~~v-~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~ 126 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGD--KGRVIACDILPMDPI---VGV-DFLQGDFRDELVLKALLERVGDSKVQVVMSDMA 126 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCC--CceEEEEecccccCC---CCc-EEEecCCCChHHHHHHHHHhCCCCCCEEecCCC
Confidence 36999999999999999887311 113444442112111 122 22322222211 244 79999999755
Q ss_pred cccccccC-C-------HHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhc--CceEEEeecCCC--CCCceEEEEE
Q 015704 328 FSVESKRC-N-------MSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAM--GWHVTLRETAEG--PHASYRILTA 395 (402)
Q Consensus 328 ~~~~~~~~-~-------~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~--~w~~~~~~~~~~--~~~~~~~l~~ 395 (402)
.....+.. + .+.+|.++.|+|||||.|++..-. -+.+.+++..+ +|+......... +.-.|.+++|
T Consensus 127 ~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~--~~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~ 204 (209)
T PRK11188 127 PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ--GEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVA 204 (209)
T ss_pred CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec--CcCHHHHHHHHHhCceEEEEECCccccccCceeEEEe
Confidence 44432210 1 246899999999999999997533 22333344443 555443332222 3345999998
Q ss_pred Ee
Q 015704 396 DK 397 (402)
Q Consensus 396 ~k 397 (402)
+.
T Consensus 205 ~~ 206 (209)
T PRK11188 205 TG 206 (209)
T ss_pred ec
Confidence 64
No 132
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.98 E-value=1.5e-09 Score=101.76 Aligned_cols=135 Identities=18% Similarity=0.288 Sum_probs=85.4
Q ss_pred CCCCCCcccCCCCcccccccccccccchhhhHHhhHHHHHHHHHHHHhcccCCCCcceEEeccccchHHHHHHhhcCCCc
Q 015704 200 NVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDC 279 (402)
Q Consensus 200 ~~~~Wp~rl~~~~~rl~~~~~~~~~~~~~~~~~~~~~w~~~~~~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~ 279 (402)
.+.||-+ -|=.+-.+.++. || +..-+|+....++. .-.| +.|||||||.|.+.-.|+.+|+.
T Consensus 78 ~l~PWRK----GPf~l~gi~IDt-----EW--rSd~KW~rl~p~l~----~L~g--k~VLDIGC~nGY~~frM~~~GA~- 139 (315)
T PF08003_consen 78 ALMPWRK----GPFSLFGIHIDT-----EW--RSDWKWDRLLPHLP----DLKG--KRVLDIGCNNGYYSFRMLGRGAK- 139 (315)
T ss_pred hhCCccc----CCcccCCEeecc-----cc--cccchHHHHHhhhC----CcCC--CEEEEecCCCcHHHHHHhhcCCC-
Confidence 3567733 334454455543 65 23335555444442 2234 35999999999999999999873
Q ss_pred eEEEeccCCCCCChhhHHhcCccc------ccccCCCCCCCCCCcccEEEEccccccccccCCHHHHHHHhhhhccCCcE
Q 015704 280 WVMNVVPVSGFNTLPVIYDRGLIG------VMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGH 353 (402)
Q Consensus 280 ~~~~v~~~~~~~~~~~~~~rg~~~------~~~~~~~~~~~~~~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~ 353 (402)
.|+.+.|..- -.+|+.+-+.+++ .+--.-|.++. .++||+|+|.+||-|.. +|...|.++...|||||.
T Consensus 140 ~ViGiDP~~l-f~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr---~Pl~~L~~Lk~~L~~gGe 214 (315)
T PF08003_consen 140 SVIGIDPSPL-FYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYHRR---SPLDHLKQLKDSLRPGGE 214 (315)
T ss_pred EEEEECCChH-HHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehhccC---CHHHHHHHHHHhhCCCCE
Confidence 4555555432 1223222222211 11112244444 58999999999999955 579999999999999999
Q ss_pred EEEE
Q 015704 354 VYIR 357 (402)
Q Consensus 354 ~~~~ 357 (402)
+|+-
T Consensus 215 LvLE 218 (315)
T PF08003_consen 215 LVLE 218 (315)
T ss_pred EEEE
Confidence 9987
No 133
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.97 E-value=3.9e-09 Score=98.89 Aligned_cols=95 Identities=22% Similarity=0.284 Sum_probs=66.4
Q ss_pred CCCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 8 IRLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 8 ~~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
..++.+|||+|||+|.++..+... .++++|+++.++..+. +.+..++....+. ++..+.+||+|+++..
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~-~n~~~~~~~~~~~------~~~~~~~fD~Vvani~- 188 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAAR-ENAELNGVELNVY------LPQGDLKADVIVANIL- 188 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHH-HHHHHcCCCceEE------EccCCCCcCEEEEcCc-
Confidence 356789999999999888776654 4899999998876665 3333444321111 1111227999998743
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
. .....++.++.++|||||.++++..
T Consensus 189 ~---~~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 189 A---NPLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred H---HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 1 1246789999999999999999953
No 134
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.97 E-value=2.7e-09 Score=96.90 Aligned_cols=96 Identities=19% Similarity=0.081 Sum_probs=67.9
Q ss_pred CCCCeEEEECCccchhHHHHcc-----CCceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEec
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCS 81 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~-----~~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~ 81 (402)
.++.+|||+|||+|..+..+++ ..++++|+++.+...+. +.....+.. ..+...|........++||.|+++
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~-~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 149 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAA-QNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVT 149 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCCcEEEEECCcccCCccCCCccEEEEc
Confidence 3567999999999998877654 26899999987776554 333344443 345556655543345789999987
Q ss_pred CcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 82 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 82 ~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
....+. ..++.+.|+|||.+++..
T Consensus 150 ~~~~~~-------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 150 AAASTI-------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCcchh-------hHHHHHhcCcCcEEEEEE
Confidence 664333 257889999999998874
No 135
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.97 E-value=1.1e-09 Score=100.98 Aligned_cols=95 Identities=25% Similarity=0.370 Sum_probs=67.1
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
++.+|||+|||+|.++..+++. .++++|+++.++..+..... ..+. ...+...| ++..+++||+|+++.+++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~-~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAP-EAGLAGNITFEVGD---LESLLGRFDTVVCLDVLI 138 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH-hcCCccCcEEEEcC---chhccCCcCEEEEcchhh
Confidence 4679999999999999888765 78999999888766654332 2333 23344444 444568899999988877
Q ss_pred ccccC-hHHHHHHHHHhcCCCeEE
Q 015704 86 NWTRD-DGILLLEVNRMLRAGGYF 108 (402)
Q Consensus 86 ~~~~d-~~~~l~e~~r~LkpgG~l 108 (402)
|+..+ ....++++.+.+++++.+
T Consensus 139 ~~~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 139 HYPQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred cCCHHHHHHHHHHHHhhcCCeEEE
Confidence 76633 467888888877544443
No 136
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.97 E-value=9.7e-10 Score=100.22 Aligned_cols=120 Identities=16% Similarity=0.097 Sum_probs=75.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhH-HhcCccc--------------ccccCCCCCCCCC---
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVI-YDRGLIG--------------VMHDWCEPFDTYP--- 316 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~-~~rg~~~--------------~~~~~~~~~~~~~--- 316 (402)
++|||+|||.|..+.+||++|+ +|+++| ++..++.+ .+.|+.. .+.-.+.++..++
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~-----~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGH-----RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCC-----eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 3699999999999999999999 455555 34444432 2333210 0111122222222
Q ss_pred -CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEE---eC-------h--hhHHHHHHHHHhcCceEEEeec
Q 015704 317 -RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR---DS-------I--DVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 317 -~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~---~~-------~--~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
..||.|+...+|.|++ ......++..|.|+|||||++++- .. . ...+.+.+.+. -+|++..-+.
T Consensus 111 ~~~fD~i~D~~~~~~l~-~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~-~~~~i~~~~~ 187 (213)
T TIGR03840 111 LGPVDAVYDRAALIALP-EEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYG-GHYEIELLES 187 (213)
T ss_pred CCCcCEEEechhhccCC-HHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhc-CCceEEEEee
Confidence 4799999999999997 345578999999999999974443 11 1 12344555443 3677776554
No 137
>PLN03075 nicotianamine synthase; Provisional
Probab=98.96 E-value=2.5e-09 Score=101.12 Aligned_cols=102 Identities=8% Similarity=0.149 Sum_probs=74.5
Q ss_pred CCCeEEEECCccchhHHHHcc------CCceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEec
Q 015704 10 LLRVVMDAGCGVASFGAYLLP------RNVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCS 81 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~------~~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~ 81 (402)
++++|+|||||.|.++..+.. ..++++|+++.++..++....+..++. ..+...|+.+.+-..+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 678999999998855433322 158899999988776663332334432 346666665543234789999988
Q ss_pred Ccccccc-cChHHHHHHHHHhcCCCeEEEEEe
Q 015704 82 RCRINWT-RDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 82 ~~~~~~~-~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
++++|. .+..++++++++.|+|||.+++.+
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 777774 578999999999999999999985
No 138
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.96 E-value=2.9e-09 Score=97.78 Aligned_cols=102 Identities=17% Similarity=0.305 Sum_probs=75.1
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCC-CcEEEeccccCCCCC-CCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLPYP-SQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~-~~~~~~~d~~~lp~~-~~sfDlI~s~~~~~ 85 (402)
.+.+|||+|||+|.++..+++. .++++|+++.++..+... ....+. ...+...+....+.+ +++||+|+++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLH-AKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHH-HHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 4679999999999988877654 688999988776555432 223333 244555565555543 37899999887644
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+ ..++..+++++.++|+|||.+++++.
T Consensus 124 ~-~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 124 H-VPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred h-CCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 4 45889999999999999999999853
No 139
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.96 E-value=3.1e-09 Score=98.33 Aligned_cols=102 Identities=16% Similarity=0.317 Sum_probs=74.6
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC-CCCCCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP-YPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp-~~~~sfDlI~s~~~~~~ 86 (402)
++.+|||+|||+|.++..+.+. .++++|+++..+..+.... ...+....+...+....+ ..+++||+|+++.++.+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHA-LESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHH-HHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 5679999999999998877765 6888999877665444222 222333344445555443 34578999999877555
Q ss_pred cccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 87 WTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 87 ~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
. .++..+++.+.+.|+|||.++++.+
T Consensus 127 ~-~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 127 V-PDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred c-CCHHHHHHHHHHHcCCCcEEEEEec
Confidence 4 4888999999999999999999864
No 140
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.95 E-value=8.5e-09 Score=92.21 Aligned_cols=96 Identities=13% Similarity=0.091 Sum_probs=68.3
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
++.+|||+|||+|.++..+++. .++++|+++.++..+. +.+...+.. ..+...+.. .++ .++||+|++....
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~-~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~~ 107 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIK-ENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGGSG 107 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECCCc
Confidence 5679999999999998877653 7899999988776655 333333333 234444432 233 3589999986532
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.....++.++.+.|+|||.+++..
T Consensus 108 ----~~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 108 ----GNLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred ----cCHHHHHHHHHHhcCCCeEEEEEE
Confidence 235678999999999999999874
No 141
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.94 E-value=1.2e-09 Score=103.82 Aligned_cols=104 Identities=18% Similarity=0.286 Sum_probs=72.3
Q ss_pred cccccCCCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEE
Q 015704 3 QINTWIRLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIH 79 (402)
Q Consensus 3 li~~~~~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~ 79 (402)
++..+..++.+|||+|||||-++...+.. .|+++|+++..+..+. +.+..++....+...... ....+.||+|+
T Consensus 154 ~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~-~N~~~N~~~~~~~v~~~~--~~~~~~~dlvv 230 (295)
T PF06325_consen 154 LLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAR-ENAELNGVEDRIEVSLSE--DLVEGKFDLVV 230 (295)
T ss_dssp HHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHH-HHHHHTT-TTCEEESCTS--CTCCS-EEEEE
T ss_pred HHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHH-HHHHHcCCCeeEEEEEec--ccccccCCEEE
Confidence 45566677889999999999776555443 7999999998776665 556666665544332222 23348999999
Q ss_pred ecCcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 80 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 80 s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+|.... -....+..+.++|+|||++++|..
T Consensus 231 ANI~~~----vL~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 231 ANILAD----VLLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp EES-HH----HHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred ECCCHH----HHHHHHHHHHHhhCCCCEEEEccc
Confidence 875411 236788889999999999999964
No 142
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.94 E-value=1.7e-10 Score=102.69 Aligned_cols=97 Identities=24% Similarity=0.345 Sum_probs=73.6
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEecccc-CCC-CCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR-RLP-YPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~-~lp-~~~~sfDlI~s~~~~~ 85 (402)
+..++||+|||||..+..|... +++|+|+|. +|+..+.+++.-....+.+.. .++ ..++.||+|++..+ +
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~-----nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV-l 198 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMADRLTGVDISE-----NMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV-L 198 (287)
T ss_pred ccceeeecccCcCcccHhHHHHHhhccCCchhH-----HHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhH-H
Confidence 4789999999999998888765 666666664 555777787765444444332 222 45678999998887 4
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.+..+++.++.-+...|+|||.|.||.
T Consensus 199 ~YlG~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 199 PYLGALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred HhhcchhhHHHHHHHhcCCCceEEEEe
Confidence 445589999999999999999999995
No 143
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.94 E-value=1.2e-09 Score=98.29 Aligned_cols=95 Identities=20% Similarity=0.241 Sum_probs=67.1
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCc------EEEeccccCCCCCCCCeeEEEec
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA------MVAAFATRRLPYPSQAFDLIHCS 81 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~------~~~~~d~~~lp~~~~sfDlI~s~ 81 (402)
..+.++|+|||+|..++.++.. +|+++|+++.|+ +.+.+..... .....+...|--.++|.|+|+|.
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL-----~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAML-----KVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhhhhheeecCCHHHH-----HHhhcCCCcccccCCccccccccccccCCCcceeeehhh
Confidence 3348999999999777777765 899999887655 4554432111 11222233333348999999988
Q ss_pred CcccccccChHHHHHHHHHhcCCCe-EEEEE
Q 015704 82 RCRINWTRDDGILLLEVNRMLRAGG-YFAWA 111 (402)
Q Consensus 82 ~~~~~~~~d~~~~l~e~~r~LkpgG-~li~~ 111 (402)
.+ .||. |.++++++++|+||+.| .+.+-
T Consensus 108 qa-~HWF-dle~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 108 QA-VHWF-DLERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred hh-HHhh-chHHHHHHHHHHcCCCCCEEEEE
Confidence 76 8898 89999999999999877 54443
No 144
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.94 E-value=4e-09 Score=96.77 Aligned_cols=96 Identities=11% Similarity=0.124 Sum_probs=72.1
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-------ccccccCCCCCCCCCCcccEEEEcc
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-------IGVMHDWCEPFDTYPRTYDLLHAAG 326 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-------~~~~~~~~~~~~~~~~sfD~v~~~~ 326 (402)
-.+|||+|||.|.++..|++++. .|+++| +++++..+.++.. +...+. ++...+++||+|.+..
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~-----~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~~~~~fD~ii~~~ 127 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGA-----IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVN---DLLSLCGEFDIVVCMD 127 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC---ChhhCCCCcCEEEEhh
Confidence 45699999999999999998875 566666 5677777766521 222322 2233348999999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
++.|.+. .++..++.++.|+++||+++.+...
T Consensus 128 ~l~~~~~-~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 128 VLIHYPA-SDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred HHHhCCH-HHHHHHHHHHHHHhCCCEEEEECCC
Confidence 9999863 4578999999999999988887643
No 145
>PRK14968 putative methyltransferase; Provisional
Probab=98.93 E-value=8.2e-09 Score=91.93 Aligned_cols=134 Identities=19% Similarity=0.273 Sum_probs=85.6
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc----ccc-cccCCCCCCCCC-CcccEEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL----IGV-MHDWCEPFDTYP-RTYDLLHA 324 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~----~~~-~~~~~~~~~~~~-~sfD~v~~ 324 (402)
.+|||+|||.|.++..|+.++. +|+.+| +++++..+.++ ++ +.. ..++. ..++ .+||+|.+
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~-----~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~d~vi~ 96 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGK-----KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLF---EPFRGDKFDVILF 96 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcc-----eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccc---ccccccCceEEEE
Confidence 3699999999999999999876 556655 45555554322 22 112 22333 3345 58999998
Q ss_pred ccccccccc------------------cCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcCceEEEeecCCC
Q 015704 325 AGLFSVESK------------------RCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTLRETAEG 385 (402)
Q Consensus 325 ~~~~~~~~~------------------~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~ 385 (402)
...+.+..+ ...+..++.++.|+|||||.+++-.+. .....+...+.+..|++.......-
T Consensus 97 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 176 (188)
T PRK14968 97 NPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEKF 176 (188)
T ss_pred CCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeeccc
Confidence 755433110 112457899999999999998886543 2356788888888998766544333
Q ss_pred CCCceEEEEEEe
Q 015704 386 PHASYRILTADK 397 (402)
Q Consensus 386 ~~~~~~~l~~~k 397 (402)
..+.-.++..+|
T Consensus 177 ~~~~~~~~~~~~ 188 (188)
T PRK14968 177 PFEELIVLELVK 188 (188)
T ss_pred CCceEEEEEEeC
Confidence 333444444443
No 146
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.92 E-value=1.2e-09 Score=89.76 Aligned_cols=101 Identities=27% Similarity=0.379 Sum_probs=70.5
Q ss_pred CCeEEEECCccchhHHHHcc---CCceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCC--CCCCCeeEEEecCc
Q 015704 11 LRVVMDAGCGVASFGAYLLP---RNVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLP--YPSQAFDLIHCSRC 83 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~---~~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp--~~~~sfDlI~s~~~ 83 (402)
+.+|||+|||+|.++..+++ ..++++|+++.....+..... ..+. ...+...|....+ +++++||+|+++..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLP-RNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCH-HCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHH-HccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 45899999999988877664 478999999876654443322 2332 3456667765554 67899999999877
Q ss_pred ccccccC-------hHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTRD-------DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~d-------~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+.....+ ...+++++.++|||||.+++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 6543211 2578999999999999999875
No 147
>PRK04266 fibrillarin; Provisional
Probab=98.92 E-value=1.2e-08 Score=93.82 Aligned_cols=97 Identities=19% Similarity=0.191 Sum_probs=67.2
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccC----CCCCCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR----LPYPSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~----lp~~~~sfDlI~s 80 (402)
.++.+|||+|||+|.++..+++. .|+++|+++.++.... +.++++ .+......|... .+++ ++||+|++
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~D~i~~ 147 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER-KNIIPILADARKPERYAHVV-EKVDVIYQ 147 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc-CCcEEEECCCCCcchhhhcc-ccCCEEEE
Confidence 35679999999999999888765 5999999998776544 444433 223444555443 1223 56999996
Q ss_pred cCcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 81 SRCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
... . ......+++++.++|||||.++++
T Consensus 148 d~~-~--p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 148 DVA-Q--PNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CCC-C--hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 422 1 111245689999999999999996
No 148
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.92 E-value=2.6e-09 Score=97.73 Aligned_cols=119 Identities=15% Similarity=0.086 Sum_probs=77.4
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhh-HHhcCccc--------------ccccCCCCCCCC---C-
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPV-IYDRGLIG--------------VMHDWCEPFDTY---P- 316 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~-~~~rg~~~--------------~~~~~~~~~~~~---~- 316 (402)
+|||+|||.|..+.+||++|+ +|+++| ++..++. +.++|+.. .+.-++.++..+ +
T Consensus 40 rvL~~gCG~G~da~~LA~~G~-----~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAEQGH-----EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred eEEEeCCCChHhHHHHHhCCC-----eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 699999999999999999998 566665 4444443 23445411 111112222222 3
Q ss_pred CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEE-Ee---Ch--------hhHHHHHHHHHhcCceEEEeec
Q 015704 317 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYI-RD---SI--------DVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 317 ~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~-~~---~~--------~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
.+||.|+-+.+|.|++ ......++..|.++|||||++++ +- +. ...+.+.+.+. -+|++.....
T Consensus 115 ~~fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~-~~~~i~~~~~ 190 (218)
T PRK13255 115 ADVDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYA-GCFEIELLER 190 (218)
T ss_pred CCeeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhc-CCceEEEeee
Confidence 5899999999999997 34567999999999999996443 31 11 12445555553 3388776543
No 149
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.92 E-value=8.2e-10 Score=99.39 Aligned_cols=87 Identities=23% Similarity=0.335 Sum_probs=62.9
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCcccccc-cCCCCCCCCC-CcccEEEEccccccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMH-DWCEPFDTYP-RTYDLLHAAGLFSVESK 333 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~-~~~~~~~~~~-~sfD~v~~~~~~~~~~~ 333 (402)
+|||+|||+|.++..|++.+. + +++++| ++.++..+..+++- .++ +..+.+++++ ++||+|+|+.+|+|+.+
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~-~---~~~giD~s~~~i~~a~~~~~~-~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQ-V---RGYGIEIDQDGVLACVARGVN-VIQGDLDEGLEAFPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccC-C---cEEEEeCCHHHHHHHHHcCCe-EEEEEhhhcccccCCCCcCEEEEhhHhHcCcC
Confidence 599999999999999986531 1 345555 46677777777652 222 2222244566 79999999999999875
Q ss_pred cCCHHHHHHHhhhhccCC
Q 015704 334 RCNMSTIMLEMDRMLRPG 351 (402)
Q Consensus 334 ~~~~~~~l~e~~RvLrpg 351 (402)
+..+|.||.|+++++
T Consensus 91 ---~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 91 ---PEEILDEMLRVGRHA 105 (194)
T ss_pred ---HHHHHHHHHHhCCeE
Confidence 689999998887753
No 150
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.92 E-value=2.5e-08 Score=88.65 Aligned_cols=149 Identities=15% Similarity=0.254 Sum_probs=90.0
Q ss_pred hhhHHhhHHHHHHHHHHHHhcc-cCC-------------CCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCCh
Q 015704 228 ELFKAESKYWNEIIESYVRALH-WKK-------------MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTL 293 (402)
Q Consensus 228 ~~~~~~~~~w~~~~~~y~~~~~-~~~-------------~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~ 293 (402)
+.|+++-+.|..+-+.|.+... |+. ..--.|-|+|||.+.+|..+... ..|.-.++++.... +
T Consensus 32 ~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~-~~V~SfDLva~n~~--V 108 (219)
T PF05148_consen 32 KLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK-HKVHSFDLVAPNPR--V 108 (219)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S----EEEEESS-SSTT--E
T ss_pred HHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC-ceEEEeeccCCCCC--E
Confidence 6788899999999999987643 221 12235999999999999887533 34566666665421 0
Q ss_pred hhHHhcCcccccccCCCCCCCCC-CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeChhh---HHHHHHH
Q 015704 294 PVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDV---MDELQEI 369 (402)
Q Consensus 294 ~~~~~rg~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~---~~~~~~~ 369 (402)
- ..++ .. .|.+ .|.|++++...|+- .+..+.|.|..|||||||.++|.|-... .+..-+.
T Consensus 109 t-------acdi----a~-vPL~~~svDv~VfcLSLMG----Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~ 172 (219)
T PF05148_consen 109 T-------ACDI----AN-VPLEDESVDVAVFCLSLMG----TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKA 172 (219)
T ss_dssp E-------ES-T----TS--S--TT-EEEEEEES---S----S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHH
T ss_pred E-------EecC----cc-CcCCCCceeEEEEEhhhhC----CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHH
Confidence 0 0111 11 2345 79999999855544 3568999999999999999999985533 4455567
Q ss_pred HHhcCceEEEeecCCCCCCceEEEEEEec
Q 015704 370 GKAMGWHVTLRETAEGPHASYRILTADKR 398 (402)
Q Consensus 370 ~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 398 (402)
++++..+....|..+. -..++..+|.
T Consensus 173 ~~~~GF~~~~~d~~n~---~F~~f~F~K~ 198 (219)
T PF05148_consen 173 LKKLGFKLKSKDESNK---HFVLFEFKKI 198 (219)
T ss_dssp HHCTTEEEEEEE--ST---TEEEEEEEE-
T ss_pred HHHCCCeEEecccCCC---eEEEEEEEEc
Confidence 8899999999876532 4555555553
No 151
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.92 E-value=7.7e-09 Score=96.87 Aligned_cols=114 Identities=19% Similarity=0.269 Sum_probs=77.4
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCCCCC---CcccEEEEccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYP---RTYDLLHAAGLFSVE 331 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~~~~---~sfD~v~~~~~~~~~ 331 (402)
.+|||+|||+|..+..+++.|+. .|+++| ++.+++.+.++.-...+. .. ..++ .+||+|+|....+
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~----~v~giDis~~~l~~A~~n~~~~~~~---~~-~~~~~~~~~fD~Vvani~~~-- 190 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAK----KVLAVDIDPQAVEAARENAELNGVE---LN-VYLPQGDLKADVIVANILAN-- 190 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCC----eEEEEECCHHHHHHHHHHHHHcCCC---ce-EEEccCCCCcCEEEEcCcHH--
Confidence 45999999999999998888752 356666 456666655542111110 00 1122 2799999973221
Q ss_pred cccCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcCceEEEeecC
Q 015704 332 SKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTLRETA 383 (402)
Q Consensus 332 ~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~ 383 (402)
.+..++.++.|+|||||++++++-. +....+...+++..+++....++
T Consensus 191 ----~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~ 239 (250)
T PRK00517 191 ----PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLER 239 (250)
T ss_pred ----HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEe
Confidence 2457899999999999999999743 34667777888888988766553
No 152
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.92 E-value=8.7e-09 Score=94.74 Aligned_cols=102 Identities=22% Similarity=0.323 Sum_probs=74.0
Q ss_pred CCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCC--CCCCCeeEEEecC
Q 015704 11 LRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLP--YPSQAFDLIHCSR 82 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp--~~~~sfDlI~s~~ 82 (402)
..+|||+|||+|.++..++++ .++++|+.+.+...+....+. +.+. ..+...|+..+. ....+||+|+||.
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l-n~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL-NPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh-CcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 679999999999999999876 688888888776665544433 2222 235566765553 3345799999987
Q ss_pred ccccccc-----------------ChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRINWTR-----------------DDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~~~-----------------d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.++.-.. +.+.+++...++|||||.+.+..+
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 6554322 235778889999999999999964
No 153
>PRK04266 fibrillarin; Provisional
Probab=98.92 E-value=1.2e-08 Score=93.73 Aligned_cols=142 Identities=17% Similarity=0.133 Sum_probs=79.0
Q ss_pred HhcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChh----hHHhcCcccccc-cCCCC--CCCCCC
Q 015704 246 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLP----VIYDRGLIGVMH-DWCEP--FDTYPR 317 (402)
Q Consensus 246 ~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~----~~~~rg~~~~~~-~~~~~--~~~~~~ 317 (402)
+.+.+..+. .|||+|||+|.++..|++... ...|.++| ++.|++ .+.++.-+..+. +..++ ...++.
T Consensus 66 ~~l~i~~g~--~VlD~G~G~G~~~~~la~~v~---~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~ 140 (226)
T PRK04266 66 KNFPIKKGS--KVLYLGAASGTTVSHVSDIVE---EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVE 140 (226)
T ss_pred hhCCCCCCC--EEEEEccCCCHHHHHHHHhcC---CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccc
Confidence 345555553 599999999999999998721 11455555 344544 333332222222 22211 112356
Q ss_pred cccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEE------eCh----hhHHHHHHHHHhcCceEEEeecCCCCC
Q 015704 318 TYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR------DSI----DVMDELQEIGKAMGWHVTLRETAEGPH 387 (402)
Q Consensus 318 sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~------~~~----~~~~~~~~~~~~~~w~~~~~~~~~~~~ 387 (402)
+||+|++.. .+......+|.|+.|+|||||+++|+ |.. .......+.+++-..+.....+-..-.
T Consensus 141 ~~D~i~~d~-----~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p~~ 215 (226)
T PRK04266 141 KVDVIYQDV-----AQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEPYH 215 (226)
T ss_pred cCCEEEECC-----CChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCc
Confidence 899998651 11111235689999999999999993 321 112223355555566665544422112
Q ss_pred CceEEEEEEe
Q 015704 388 ASYRILTADK 397 (402)
Q Consensus 388 ~~~~~l~~~k 397 (402)
..+..++++|
T Consensus 216 ~~h~~~v~~~ 225 (226)
T PRK04266 216 KDHAAVVARK 225 (226)
T ss_pred CCeEEEEEEc
Confidence 2455666665
No 154
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.91 E-value=8.5e-09 Score=100.51 Aligned_cols=104 Identities=22% Similarity=0.168 Sum_probs=76.5
Q ss_pred CCCCeEEEECCccchhHHHHcc--CCceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCCCCCeeEEEecCccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP--RNVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~--~~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
.++.+|||+|||+|.++...+. ..++++|+++.++..+.. .++..+... .+...|+.++|+++++||+|+++..+.
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~-nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg 259 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARI-NLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYG 259 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHH-HHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCc
Confidence 3567999999999988765543 378999999988766553 334444443 466778888888888999999875421
Q ss_pred cc-------ccC-hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NW-------TRD-DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~-------~~d-~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.. ..+ ...+++++.++|+|||++++..+
T Consensus 260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 11 101 36889999999999999999864
No 155
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.91 E-value=1.6e-09 Score=100.20 Aligned_cols=96 Identities=17% Similarity=0.303 Sum_probs=69.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-ccccccCCCCCCCCC-CcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEPFDTYP-RTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~~~~~~~~~~~-~sfD~v~~~~~~ 328 (402)
..|||+|||.|.++..+++.++ +++.+| ++.++..+.++ +. +...+...+.++..+ .+||+|++++++
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~~-----~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLGA-----DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcCC-----eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 3599999999999999998876 466665 45555555443 32 222222222333233 799999999999
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
+|..+ +..+|.++.|+|+|||+++++..
T Consensus 125 ~~~~~---~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 125 EHVPD---PASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hccCC---HHHHHHHHHHHcCCCcEEEEEec
Confidence 99874 57899999999999999999864
No 156
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.90 E-value=5.7e-09 Score=95.30 Aligned_cols=96 Identities=15% Similarity=0.103 Sum_probs=67.9
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
.++.+|||+|||+|.++..+++. .++++|+++.+...+.. ..+..+.. ..+...|......+.++||+|++..
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~-~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKK-TLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC
Confidence 36689999999999988766542 78999999877766553 33334443 4466667655555567899999865
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
...+ ....+.+.|||||.+++..
T Consensus 154 ~~~~-------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 154 AGPD-------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred Cccc-------chHHHHHhhCCCcEEEEEE
Confidence 4322 2346677899999998873
No 157
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.90 E-value=2.7e-09 Score=94.65 Aligned_cols=99 Identities=18% Similarity=0.298 Sum_probs=73.9
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
.+.-|||||||+|..+..|.+. ..+++|+|+.|++.++. +.+.. ...+.--+.+||++++||-+++.. +++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~-----~e~egdlil~DMG~GlpfrpGtFDg~ISIS-AvQ 123 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE-----RELEGDLILCDMGEGLPFRPGTFDGVISIS-AVQ 123 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH-----hhhhcCeeeeecCCCCCCCCCccceEEEee-eee
Confidence 4568999999999888888776 68899999998876653 21221 222222388999999999999754 467
Q ss_pred cccC-------h----HHHHHHHHHhcCCCeEEEEEeCC
Q 015704 87 WTRD-------D----GILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 87 ~~~d-------~----~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
|.-+ | ..++..++.+|++|+..++...|
T Consensus 124 WLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 124 WLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred eecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 7432 2 35788899999999999999543
No 158
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.90 E-value=3.9e-08 Score=104.98 Aligned_cols=122 Identities=17% Similarity=0.215 Sum_probs=75.8
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc----ccccccCC-CCCCCCCCcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL----IGVMHDWC-EPFDTYPRTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~----~~~~~~~~-~~~~~~~~sfD~v~~~ 325 (402)
++|||+|||+|+|+.+++..|+. .|+.+| ++.+++.+.+. |+ +..++.-+ +.+..++++||+|++.
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~----~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK----STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC----EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 46999999999999999998762 466666 45556544432 33 12222111 1111124689999985
Q ss_pred c-ccccc-------cccCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEee
Q 015704 326 G-LFSVE-------SKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 326 ~-~~~~~-------~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 381 (402)
- .|... ....+...++....|+|+|||.++++............+..-.+++....
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEIT 679 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEe
Confidence 1 11100 00113467888889999999999987655444444666666677777654
No 159
>PRK14968 putative methyltransferase; Provisional
Probab=98.90 E-value=2.3e-08 Score=89.02 Aligned_cols=102 Identities=20% Similarity=0.197 Sum_probs=70.5
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC---cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~---~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..++.. .++++|+++.++..+... ....+.. ..+...|... ++.+++||+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~-~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCN-AKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHH-HHHcCCCCcceEEEeccccc-cccccCceEEEECCC
Confidence 35678999999999998888765 889999998777655433 3333332 3344445333 344558999998765
Q ss_pred cccccc--------------------ChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTR--------------------DDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~--------------------d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+.+..+ ....+++++.++|||||.+++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 433110 12467999999999999998875
No 160
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.89 E-value=1.2e-08 Score=95.24 Aligned_cols=102 Identities=21% Similarity=0.279 Sum_probs=72.2
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
..+.+|||+|||+|.++..++.. .++++|+++.++..+. ..+...+.. ..+...|... ++++++||+|+|+..
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~-~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npP 163 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVAR-KNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPP 163 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCC
Confidence 34569999999999998888764 7899999988776555 333444444 3455556543 456789999999765
Q ss_pred ccccc------cC-------------------hHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWT------RD-------------------DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~------~d-------------------~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+.... .+ ...+++++.++|+|||.+++..
T Consensus 164 y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 164 YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 33211 00 1357889999999999999985
No 161
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.88 E-value=4.3e-09 Score=93.17 Aligned_cols=120 Identities=17% Similarity=0.178 Sum_probs=98.8
Q ss_pred cCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-----ccccccCCCCCCCCC-CcccEE
Q 015704 250 WKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-----IGVMHDWCEPFDTYP-RTYDLL 322 (402)
Q Consensus 250 ~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-----~~~~~~~~~~~~~~~-~sfD~v 322 (402)
++.-+.+.|.|+|||+|.-++.|+.+= ....|+++| +..|+..|..|.. .+++++|+ | +.+|++
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTelL~~Rw---P~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~------p~~~~dll 96 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTELLARRW---PDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK------PEQPTDLL 96 (257)
T ss_pred CCccccceeeecCCCCCHHHHHHHHhC---CCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC------CCCccchh
Confidence 556678889999999999999999982 234788899 5899999998877 58888887 4 788999
Q ss_pred EEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh----hhHHHHHHHHHhcCceEEEee
Q 015704 323 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI----DVMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~----~~~~~~~~~~~~~~w~~~~~~ 381 (402)
++.-||+-+++ ...+|.-.---|.|||++.+.-+. .....|++.+++.-|......
T Consensus 97 faNAvlqWlpd---H~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~ 156 (257)
T COG4106 97 FANAVLQWLPD---HPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGG 156 (257)
T ss_pred hhhhhhhhccc---cHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCc
Confidence 99999999885 478999999999999999998432 346788999998888765543
No 162
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.88 E-value=1e-08 Score=98.58 Aligned_cols=104 Identities=14% Similarity=0.139 Sum_probs=70.4
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHc-CCCcEEEeccccC-CCCCCC----CeeE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALER-GAPAMVAAFATRR-LPYPSQ----AFDL 77 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~-~~~~~~~~~d~~~-lp~~~~----sfDl 77 (402)
+++.+|||+|||+|..+..|++. .++++|+|+.++..++.+..... +.......+|+.+ ++++.. ...+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 35678999999999988877644 68999999998877765544322 2333445667554 344332 2334
Q ss_pred EEecCccccccc-ChHHHHHHHHHhcCCCeEEEEEe
Q 015704 78 IHCSRCRINWTR-DDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 78 I~s~~~~~~~~~-d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+++..++.++.+ +...+|++++++|+|||.|++..
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 444444444442 24679999999999999999985
No 163
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.88 E-value=9.5e-09 Score=94.02 Aligned_cols=96 Identities=16% Similarity=0.130 Sum_probs=68.2
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
.++.+|||+|||+|.++..+++. .|+++|+++..+..+. +...+.+.. ..+...|........++||+|++..
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~-~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~ 154 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAE-RRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTA 154 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcC
Confidence 35679999999999999887754 3899999987776555 344444543 3455556554433456899999765
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.. ......+.+.|+|||++++..
T Consensus 155 ~~-------~~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 155 AG-------PKIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred Cc-------ccccHHHHHhcCcCcEEEEEE
Confidence 42 233456789999999999874
No 164
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.88 E-value=2.7e-09 Score=98.01 Aligned_cols=96 Identities=18% Similarity=0.270 Sum_probs=68.6
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCC-CCcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTY-PRTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~-~~sfD~v~~~~~ 327 (402)
.+|||+|||+|.++..+++.++ .++.+| ++.++..+.++ ++ +.......+.++.. +.+||+|++.++
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~~~-----~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARLGA-----NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CeEEEECCCCCHHHHHHHhcCC-----eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 4699999999999999998876 355555 34555554442 22 22222222222222 379999999999
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
++|.. ++..+|.++.++|+|||.+++++.
T Consensus 122 l~~~~---~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 122 LEHVP---DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred HHhCC---CHHHHHHHHHHhcCCCcEEEEEec
Confidence 99976 468999999999999999999864
No 165
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.87 E-value=3.8e-09 Score=96.62 Aligned_cols=97 Identities=25% Similarity=0.358 Sum_probs=69.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc----ccccccCCCCCCCCC-CcccEEEEccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL----IGVMHDWCEPFDTYP-RTYDLLHAAGLFS 329 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~----~~~~~~~~~~~~~~~-~sfD~v~~~~~~~ 329 (402)
.+|||+|||.|.++..+++.+.+ ..+++.+| ++.++..+.++.- +..++......+ ++ .+||+|+++.+++
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~~--~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAPD--RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALP-FEDNSFDAVTIAFGLR 117 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcCC--CceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCC-CCCCcEEEEEEeeeeC
Confidence 46999999999999999887531 12455555 3455655555431 233332223323 45 7999999999988
Q ss_pred cccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 330 VESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
|.. ++..+|+++.++|||||++++.+
T Consensus 118 ~~~---~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 118 NVT---DIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred Ccc---cHHHHHHHHHHHcCCCcEEEEEE
Confidence 866 46899999999999999999875
No 166
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.87 E-value=5.2e-09 Score=94.20 Aligned_cols=92 Identities=25% Similarity=0.265 Sum_probs=64.5
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccC-C-CCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-L-PYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~-l-p~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++ +.+++++. .+...++.. + ++++++||+|+|+.+
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i-----~~a~~~~~--~~~~~d~~~~l~~~~~~sfD~Vi~~~~ 84 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGV-----LACVARGV--NVIQGDLDEGLEAFPDKSFDYVILSQT 84 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHH-----HHHHHcCC--eEEEEEhhhcccccCCCCcCEEEEhhH
Confidence 45679999999999999888654 567888876544 34444443 234445443 4 467789999999877
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
++| ..++..+++++.|.++ ..+++
T Consensus 85 l~~-~~d~~~~l~e~~r~~~---~~ii~ 108 (194)
T TIGR02081 85 LQA-TRNPEEILDEMLRVGR---HAIVS 108 (194)
T ss_pred hHc-CcCHHHHHHHHHHhCC---eEEEE
Confidence 554 5588999999988765 34555
No 167
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.86 E-value=1.4e-08 Score=79.86 Aligned_cols=98 Identities=23% Similarity=0.310 Sum_probs=68.3
Q ss_pred eEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcC-CCcEEEeccccCCCC-CCCCeeEEEecCccccc
Q 015704 13 VVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERG-APAMVAAFATRRLPY-PSQAFDLIHCSRCRINW 87 (402)
Q Consensus 13 ~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~-~~~~~~~~d~~~lp~-~~~sfDlI~s~~~~~~~ 87 (402)
+|+|+|||+|.++..+... .++++|+++.....+.. ...... ....+...+..+... ..++||+|+++.++.++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARK-AAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-HHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 5899999999998888762 78888988765543331 111111 123344555544442 45789999998774443
Q ss_pred ccChHHHHHHHHHhcCCCeEEEEE
Q 015704 88 TRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 88 ~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
.......++.+.+.|+|||.++++
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 556789999999999999999876
No 168
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.86 E-value=9.9e-09 Score=99.06 Aligned_cols=100 Identities=18% Similarity=0.263 Sum_probs=71.6
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
+..+|||+|||+|.++..++++ +++++|+ +..+..+. +.+.+.+.. ..+...|....+++ .+|+|+++.+
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~gl~~rv~~~~~d~~~~~~~--~~D~v~~~~~ 224 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVN-ENAAEKGVADRMRGIAVDIYKESYP--EADAVLFCRI 224 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHH-HHHHhCCccceEEEEecCccCCCCC--CCCEEEeEhh
Confidence 4579999999999998888765 5778886 44443333 344444543 23556676555554 3699988887
Q ss_pred ccccccCh-HHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~-~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++|.++. ..+++++++.|+|||.+++...
T Consensus 225 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 225 LYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 77776443 6799999999999999999854
No 169
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.85 E-value=5.1e-09 Score=97.78 Aligned_cols=111 Identities=21% Similarity=0.242 Sum_probs=79.0
Q ss_pred cccccCCCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHc------CCCcEEEecc------ccC
Q 015704 3 QINTWIRLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALER------GAPAMVAAFA------TRR 67 (402)
Q Consensus 3 li~~~~~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~------~~~~~~~~~d------~~~ 67 (402)
||..+.+++..++|+|||-|.-+..+... .++++||+...+.+++.+.-.-. -.+..+..+| .+.
T Consensus 110 LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~ 189 (389)
T KOG1975|consen 110 LINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDL 189 (389)
T ss_pred HHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHh
Confidence 57778888999999999998665555443 78999999888877765433211 1234455554 233
Q ss_pred CCCCCCCeeEEEecCcccccccC---hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 68 LPYPSQAFDLIHCSRCRINWTRD---DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 68 lp~~~~sfDlI~s~~~~~~~~~d---~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++++.+||+|-|.+++|+--.+ ...+|+++.+.|+|||+||-+.|
T Consensus 190 ~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 190 LEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred ccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 55666679999998775443333 35789999999999999999853
No 170
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.85 E-value=3.7e-09 Score=102.03 Aligned_cols=101 Identities=14% Similarity=0.248 Sum_probs=68.9
Q ss_pred CCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHH----hcCc---ccccccCCCCCCCCCCcccEEEEc
Q 015704 253 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIY----DRGL---IGVMHDWCEPFDTYPRTYDLLHAA 325 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~----~rg~---~~~~~~~~~~~~~~~~sfD~v~~~ 325 (402)
...+.|||+|||+|.++..++++..++ +++..|.+.+++.+. +.|+ +..+..-... .++| .+|+|+++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~---~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~-~~~~-~~D~v~~~ 222 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPEL---DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYK-ESYP-EADAVLFC 222 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCC---EEEEEecHHHHHHHHHHHHhCCccceEEEEecCccC-CCCC-CCCEEEeE
Confidence 445679999999999999999885322 444445445555443 3354 2223221111 1244 47999999
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
++++++.+ .....+|+++.|.|||||.+++-|.
T Consensus 223 ~~lh~~~~-~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 223 RILYSANE-QLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhhcCCh-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 99888764 2346899999999999999999863
No 171
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=1.6e-08 Score=95.49 Aligned_cols=129 Identities=19% Similarity=0.265 Sum_probs=85.8
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----CcccccccCCCCCCCCC-C-cccEEEEcc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GLIGVMHDWCEPFDTYP-R-TYDLLHAAG 326 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~~~~~~~~~~~~~~~~-~-sfD~v~~~~ 326 (402)
.-++|||+|||+|.++-+.++.|+. .|.++| .+..++.+++. |+-...+...-..+..+ + .||+|+|.-
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~----~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI 237 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAK----KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI 237 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCc----eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh
Confidence 4567999999999999999999884 344444 24445444443 33211222222224455 4 999999983
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEe
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 397 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 397 (402)
| .+ -+..+..++.|.|||||++|+|-=. +..+.+...+.+-.|.+..+... .|++.+.-|
T Consensus 238 -L---A~--vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~-----~eW~~i~~k 298 (300)
T COG2264 238 -L---AE--VLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER-----EEWVAIVGK 298 (300)
T ss_pred -h---HH--HHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEec-----CCEEEEEEE
Confidence 2 21 1347788899999999999999632 33667777888889998888775 355555443
No 172
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.85 E-value=1.6e-08 Score=83.46 Aligned_cols=92 Identities=20% Similarity=0.208 Sum_probs=61.5
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc--ccccccCCCCCCCC-CCcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMHDWCEPFDTY-PRTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~~~~~~~~~~-~~sfD~v~~~~~~ 328 (402)
.|||+|||+|.++..++++... ..|+++| ++.+++.+.. .++ +..+....+...++ +.+||.|++....
T Consensus 22 ~vldlG~G~G~~~~~l~~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~ 98 (124)
T TIGR02469 22 VLWDIGAGSGSITIEAARLVPN---GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSG 98 (124)
T ss_pred EEEEeCCCCCHHHHHHHHHCCC---ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcc
Confidence 6999999999999999987321 3566666 4555554432 233 22222211111222 3799999998644
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
.+ ...++.++.|+|||||++++.
T Consensus 99 ~~------~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 99 GL------LQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred hh------HHHHHHHHHHHcCCCCEEEEE
Confidence 33 358999999999999999986
No 173
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.83 E-value=4.8e-08 Score=93.16 Aligned_cols=101 Identities=14% Similarity=0.159 Sum_probs=71.0
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
++.+|||+|||+|.++..++.. .++++|+++.++..+. +.++..+.. ..+...|... ++++++||+|+|+..
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~-~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAE-INIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPP 198 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCC
Confidence 4568999999999998888754 6999999998876665 444445543 3455556422 234568999999754
Q ss_pred ccccc----------cC--------------hHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWT----------RD--------------DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~----------~d--------------~~~~l~e~~r~LkpgG~li~~~ 112 (402)
..... .+ ...+++++.++|+|||.+++..
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 32110 01 1456888999999999999985
No 174
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.83 E-value=9.2e-09 Score=92.60 Aligned_cols=120 Identities=14% Similarity=0.207 Sum_probs=73.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc--ccccccCCCCCC--CCC-CcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMHDWCEPFD--TYP-RTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~~~~~~~~--~~~-~sfD~v~~~ 325 (402)
+.|||+|||.|.++..|+.+..+ .+++++| +..++..+.. .|+ +..++.....++ .+| .+||.|+++
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~---~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPD---KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCC---CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 46999999999999999988532 3566666 4556554433 343 333333222222 255 599999987
Q ss_pred cccc-----cccccCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHH-HHhcCceEE
Q 015704 326 GLFS-----VESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEI-GKAMGWHVT 378 (402)
Q Consensus 326 ~~~~-----~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~-~~~~~w~~~ 378 (402)
.-.. |...+.....+|.++.|+|||||.+++.... .....+.+. ...-+|+..
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENT 154 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEec
Confidence 3221 2122223368999999999999999987544 334444444 333346654
No 175
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.82 E-value=9.1e-09 Score=95.14 Aligned_cols=97 Identities=26% Similarity=0.359 Sum_probs=68.8
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC----c---ccccccCCCCCCCCC-CcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----L---IGVMHDWCEPFDTYP-RTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg----~---~~~~~~~~~~~~~~~-~sfD~v~~~~ 326 (402)
..|||+|||.|.++..++..+. ....++.+| ++.+++.+.++- + +..++...+.++ ++ .+||+|+++.
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~I~~~~ 129 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVG--KTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP-FPDNSFDAVTIAF 129 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC-CCCCCccEEEEec
Confidence 4699999999999999988751 123566666 455655554441 1 233332223322 44 7999999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
++.|.. ++..+|.++.++|+|||.+++.+
T Consensus 130 ~l~~~~---~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 130 GLRNVP---DIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ccccCC---CHHHHHHHHHHhccCCcEEEEEE
Confidence 988866 46899999999999999999865
No 176
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.82 E-value=2.5e-08 Score=90.07 Aligned_cols=98 Identities=16% Similarity=0.177 Sum_probs=69.4
Q ss_pred CCCeEEEECCccchhHHHHcc-----CCceEEeCCccchHHHHHHHHHHcCC-C-cEEEeccccC-CCCCCCCeeEEEec
Q 015704 10 LLRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGA-P-AMVAAFATRR-LPYPSQAFDLIHCS 81 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~-----~~v~~vdi~~~~~~~a~~~~a~~~~~-~-~~~~~~d~~~-lp~~~~sfDlI~s~ 81 (402)
++.+|||+|||+|.++..++. .+++++|+++.++..++ +.++..+. . ..+...|..+ ++...++||.|++.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~-~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~ 118 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTR-RNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG 118 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence 567999999999998876543 26899999998776555 33444442 2 3344455443 33334689999975
Q ss_pred CcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 82 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 82 ~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.. ..++..+++++.++|+|||.+++..
T Consensus 119 ~~----~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 119 GG----SEKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred CC----cccHHHHHHHHHHHcCCCcEEEEEe
Confidence 32 2356889999999999999999864
No 177
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.82 E-value=2e-08 Score=98.55 Aligned_cols=120 Identities=14% Similarity=0.131 Sum_probs=73.2
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCCh----hhHHhcCc--ccccccCCCC-CCCCC-CcccEEEEccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTL----PVIYDRGL--IGVMHDWCEP-FDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~----~~~~~rg~--~~~~~~~~~~-~~~~~-~sfD~v~~~~~ 327 (402)
.+||+|||.|.|+..+|.+..+ .+++++| ...++ ..+..+|+ +..++.-... +..+| ++||.|+++--
T Consensus 125 ~vLEIGcGsG~~ll~lA~~~P~---~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 125 ILIEIGFGSGRHLLYQAKNNPN---KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred eEEEEcCcccHHHHHHHHhCCC---CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 5999999999999999998532 3566666 33444 33444455 3333322222 23467 89999998732
Q ss_pred ccccccc---CCHHHHHHHhhhhccCCcEEEEE-eChhhHHH-HHHHHHhcCceEEE
Q 015704 328 FSVESKR---CNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDE-LQEIGKAMGWHVTL 379 (402)
Q Consensus 328 ~~~~~~~---~~~~~~l~e~~RvLrpgG~~~~~-~~~~~~~~-~~~~~~~~~w~~~~ 379 (402)
..+-..+ -.-...|.|+.|+|||||.+.++ |....... ++.+...-+++...
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~~~ 258 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKIEI 258 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCceeec
Confidence 2211111 01258999999999999999996 44333333 44444444555533
No 178
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.82 E-value=6.9e-09 Score=95.67 Aligned_cols=97 Identities=13% Similarity=0.196 Sum_probs=67.6
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----CcccccccCCCCCCCCCCcccEEEEcccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GLIGVMHDWCEPFDTYPRTYDLLHAAGLFSV 330 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~~~~~~~~~~~~~~~~~sfD~v~~~~~~~~ 330 (402)
.+|||+|||+|.++..|++.+. .|+.+| ++++++.+.++ ++-..++-...+++..+.+||+|+|.++++|
T Consensus 65 ~~vLDvGcG~G~~~~~l~~~~~-----~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 65 LRILDAGCGVGSLSIPLARRGA-----KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CEEEEEeCCCCHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 4699999999999999999875 466766 56777766654 2201111111222322379999999999999
Q ss_pred ccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 331 ESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 331 ~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+++. +...++.++.|++++|+.+.+..
T Consensus 140 ~~~~-~~~~~l~~l~~~~~~~~~i~~~~ 166 (230)
T PRK07580 140 YPQE-DAARMLAHLASLTRGSLIFTFAP 166 (230)
T ss_pred CCHH-HHHHHHHHHHhhcCCeEEEEECC
Confidence 7743 56789999999887666655443
No 179
>PTZ00146 fibrillarin; Provisional
Probab=98.81 E-value=3.7e-08 Score=92.89 Aligned_cols=102 Identities=18% Similarity=0.202 Sum_probs=63.4
Q ss_pred ccCCCCcceEEeccccchHHHHHHhhcC-C--CceEEEeccCCCCCChhhHHhc-CcccccccCCCCC--CCCCCcccEE
Q 015704 249 HWKKMKLRNVLDMRAGFGGFAAALIEQK-F--DCWVMNVVPVSGFNTLPVIYDR-GLIGVMHDWCEPF--DTYPRTYDLL 322 (402)
Q Consensus 249 ~~~~~~~~~vLD~g~g~G~~~~~l~~~~-~--~~~~~~v~~~~~~~~~~~~~~r-g~~~~~~~~~~~~--~~~~~sfD~v 322 (402)
.+..+ .+|||+|||+|+++.++++.. . .|+.+++.+....+++..+..| .++..+.+...+. .....+||+|
T Consensus 129 ~IkpG--~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV 206 (293)
T PTZ00146 129 PIKPG--SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVI 206 (293)
T ss_pred ccCCC--CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEE
Confidence 34444 359999999999999999872 1 1333333321112456666554 4444443432221 1112689999
Q ss_pred EEccccccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 323 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
++... .++ ....++.|+.|+|||||+|+|.
T Consensus 207 ~~Dva---~pd--q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 207 FADVA---QPD--QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEeCC---Ccc--hHHHHHHHHHHhccCCCEEEEE
Confidence 99853 121 3356778999999999999995
No 180
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.81 E-value=3.9e-08 Score=87.99 Aligned_cols=94 Identities=14% Similarity=0.159 Sum_probs=63.7
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC--------CCCCCe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--------YPSQAF 75 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp--------~~~~sf 75 (402)
.++.+|||+|||+|.++..++.. .++++|+++.. ... ...+...|..+.+ ++.++|
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~--~i~~~~~d~~~~~~~~~l~~~~~~~~~ 99 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIE--NVDFIRGDFTDEEVLNKIRERVGDDKV 99 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCC--CceEEEeeCCChhHHHHHHHHhCCCCc
Confidence 35679999999999988777543 48999999743 111 2234444544332 456789
Q ss_pred eEEEecCccc---ccccC-------hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 76 DLIHCSRCRI---NWTRD-------DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 76 DlI~s~~~~~---~~~~d-------~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+|+++.+.. +|..+ ...++.++.++|+|||.+++..+
T Consensus 100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 100 DVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred cEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 9999854311 12111 25789999999999999999753
No 181
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.79 E-value=8.2e-09 Score=92.98 Aligned_cols=145 Identities=14% Similarity=0.198 Sum_probs=96.1
Q ss_pred CCeEEEECCccchhHHHHccC------CceEEeCCccchHHHHHHHHHHcC------CCcEEEecccc--CCCCCCCCee
Q 015704 11 LRVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFALERG------APAMVAAFATR--RLPYPSQAFD 76 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~------~v~~vdi~~~~~~~a~~~~a~~~~------~~~~~~~~d~~--~lp~~~~sfD 76 (402)
..+||++|||.|.....+++. .+.+.|.++..+ +..+++. ....+...+.+ .-|...+++|
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai-----~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD 146 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAI-----ELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVD 146 (264)
T ss_pred hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHH-----HHHHhccccchhhhcccceeccchhccCCCCcCccc
Confidence 348999999999877766653 577888887554 3222221 11112222222 2356678999
Q ss_pred EEEecCcccccccC-hHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHHHHHhhhhhcceeeeeccceEEEeecCCC
Q 015704 77 LIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTN 155 (402)
Q Consensus 77 lI~s~~~~~~~~~d-~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (402)
.|++.+++....++ ...++.+++++|||||.+++.....++-.. ++ +. ..+-+....+.++..+++|-++..
T Consensus 147 ~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dlaq-lR--F~----~~~~i~~nfYVRgDGT~~YfF~~e 219 (264)
T KOG2361|consen 147 IITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQ-LR--FK----KGQCISENFYVRGDGTRAYFFTEE 219 (264)
T ss_pred eEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHH-Hh--cc----CCceeecceEEccCCceeeeccHH
Confidence 99998877776655 478999999999999999999643222211 11 11 122234445667788899999988
Q ss_pred hhhhhhhhcCCC
Q 015704 156 NSCYLNREAGTI 167 (402)
Q Consensus 156 ~~~~~l~~aGf~ 167 (402)
....++.+|||.
T Consensus 220 eL~~~f~~agf~ 231 (264)
T KOG2361|consen 220 ELDELFTKAGFE 231 (264)
T ss_pred HHHHHHHhcccc
Confidence 877788899994
No 182
>PLN03075 nicotianamine synthase; Provisional
Probab=98.79 E-value=5e-08 Score=92.39 Aligned_cols=134 Identities=11% Similarity=0.088 Sum_probs=82.1
Q ss_pred CcceEEeccccchHHHHHHhh--cCCCceEEEeccCC-CCCChhhHHh-----cCc---ccccc-cCCCCCCCCCCcccE
Q 015704 254 KLRNVLDMRAGFGGFAAALIE--QKFDCWVMNVVPVS-GFNTLPVIYD-----RGL---IGVMH-DWCEPFDTYPRTYDL 321 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~--~~~~~~~~~v~~~~-~~~~~~~~~~-----rg~---~~~~~-~~~~~~~~~~~sfD~ 321 (402)
.-++|+|+|||.|++++.+.. ...+ ..++.+| ++.+.+.|.. .|+ +.+.. +..+ ..+....||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~---~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~-~~~~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPT---TSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD-VTESLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCC---CEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhh-cccccCCcCE
Confidence 557799999999988776544 2222 2344444 2333332222 344 22222 2222 1111268999
Q ss_pred EEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHh-------cCceEEEeecCCCCCCceEEEE
Q 015704 322 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKA-------MGWHVTLRETAEGPHASYRILT 394 (402)
Q Consensus 322 v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~-------~~w~~~~~~~~~~~~~~~~~l~ 394 (402)
|+|. ++.+.. +.+...+|..+.|.|||||+++++-.. .++.++.. -.|++...-+..++ .-..+.|
T Consensus 199 VF~~-ALi~~d-k~~k~~vL~~l~~~LkPGG~Lvlr~~~----G~r~~LYp~v~~~~~~gf~~~~~~~P~~~-v~Nsvi~ 271 (296)
T PLN03075 199 VFLA-ALVGMD-KEEKVKVIEHLGKHMAPGALLMLRSAH----GARAFLYPVVDPCDLRGFEVLSVFHPTDE-VINSVII 271 (296)
T ss_pred EEEe-cccccc-cccHHHHHHHHHHhcCCCcEEEEeccc----chHhhcCCCCChhhCCCeEEEEEECCCCC-ceeeEEE
Confidence 9999 887775 346799999999999999999999521 11111111 08998887775432 4466788
Q ss_pred EEec
Q 015704 395 ADKR 398 (402)
Q Consensus 395 ~~k~ 398 (402)
++|.
T Consensus 272 ~r~~ 275 (296)
T PLN03075 272 ARKP 275 (296)
T ss_pred EEee
Confidence 8885
No 183
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.79 E-value=4.1e-08 Score=96.95 Aligned_cols=102 Identities=19% Similarity=0.135 Sum_probs=70.6
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC-CCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY-PSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~-~~~sfDlI~s~~~~ 84 (402)
++.+|||+|||+|.++..++.. .++++|+++.++..++ +.++..+....+...|.....+ ..++||+|+||...
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~Ar-eNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETAR-KNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence 3469999999999998877642 7899999998887665 3444445445566666543322 24579999998754
Q ss_pred ccccc--------------------C----hHHHHHHHHHhcCCCeEEEEEe
Q 015704 85 INWTR--------------------D----DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 85 ~~~~~--------------------d----~~~~l~e~~r~LkpgG~li~~~ 112 (402)
..-.. + ...+++++.+.|+|||.+++..
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 32110 1 1256677788999999999875
No 184
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.78 E-value=3.8e-08 Score=88.70 Aligned_cols=97 Identities=20% Similarity=0.107 Sum_probs=66.3
Q ss_pred CCCeEEEECCccchhHHHHcc----CCceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccC-CCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRR-LPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~----~~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~-lp~~~~sfDlI~s~~~ 83 (402)
++.+|||+|||+|.++..++. ..++++|+++.++..++ +.+.+.+.. ..+...|+.. ++.....+|.++...
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~-~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~- 117 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIR-RNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG- 117 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC-
Confidence 567999999999999887753 27999999998776655 333344443 3344455432 222223457665321
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
..+...+++++.++|+|||.+++.+
T Consensus 118 ----~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 118 ----GRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred ----CcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 2345789999999999999999996
No 185
>PHA03411 putative methyltransferase; Provisional
Probab=98.78 E-value=3.8e-08 Score=91.89 Aligned_cols=96 Identities=14% Similarity=0.161 Sum_probs=66.8
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
...+|||+|||+|.++..++.+ .++++|+++.++ +.++++.....+...|+..+. .+.+||+|+++..++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al-----~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~ 137 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFA-----RIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFG 137 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHH-----HHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCcc
Confidence 4569999999999888777542 688999987655 334333223456666766554 346899999998877
Q ss_pred ccccC-------------------hHHHHHHHHHhcCCCeEEEEE
Q 015704 86 NWTRD-------------------DGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 86 ~~~~d-------------------~~~~l~e~~r~LkpgG~li~~ 111 (402)
+.... ...++.....+|+|+|.+.+.
T Consensus 138 ~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 138 KINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred ccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 64321 134567778888999977666
No 186
>PTZ00146 fibrillarin; Provisional
Probab=98.77 E-value=7.4e-08 Score=90.87 Aligned_cols=98 Identities=14% Similarity=0.133 Sum_probs=67.1
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccC---CCCCCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR---LPYPSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~---lp~~~~sfDlI~s 80 (402)
.++.+|||+|||+|.++..+++. .|+++|+++.+.. .++..+..+ .+......|+.. .+...++||+|++
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~-dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGR-DLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHH-HHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEE
Confidence 46679999999999999888865 5999999965442 333444433 223444455432 2223458999998
Q ss_pred cCcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 81 SRCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
... .+++...++.++.+.|||||.|++.
T Consensus 209 Dva---~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 209 DVA---QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred eCC---CcchHHHHHHHHHHhccCCCEEEEE
Confidence 643 1323456677899999999999996
No 187
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.77 E-value=9.3e-09 Score=92.68 Aligned_cols=114 Identities=18% Similarity=0.132 Sum_probs=75.7
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCcccccccC-------CCCCCCCCCcccEEEEc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDW-------CEPFDTYPRTYDLLHAA 325 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~-------~~~~~~~~~sfD~v~~~ 325 (402)
..|.++|+|||+|--+..++.... +|+++| ++.||+++...--+...|.- .++|..=++|.|+|.|.
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~k-----~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHYK-----EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhhh-----hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhh
Confidence 345799999999955555666655 888888 78899988776544333321 12222225899999999
Q ss_pred cccccccccCCHHHHHHHhhhhccCCc-EEEE---EeChhhHHHHHHHHHhcCce
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGG-HVYI---RDSIDVMDELQEIGKAMGWH 376 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG-~~~~---~~~~~~~~~~~~~~~~~~w~ 376 (402)
+.++ +++.+....++.|||||.| .+.+ +|.....-+.-.+..+++|+
T Consensus 108 qa~H----WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 108 QAVH----WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hhHH----hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 7775 4678999999999999999 2222 33322333444444455553
No 188
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.75 E-value=4.6e-08 Score=89.27 Aligned_cols=96 Identities=16% Similarity=0.055 Sum_probs=65.1
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
.++.+|||+|||+|.++..++.. .++++|+++.++..+. +...+.+.. ..+...|......+.++||+|++.....
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~-~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~ 155 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAK-RRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAP 155 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHH-HHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCch
Confidence 35679999999999988766654 6899999977665554 333333443 3345555433222347899999865422
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
....++.+.|+|||.+++..
T Consensus 156 -------~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 156 -------EIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred -------hhhHHHHHhcCCCcEEEEEE
Confidence 22456789999999999985
No 189
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.75 E-value=2.9e-08 Score=94.42 Aligned_cols=130 Identities=19% Similarity=0.240 Sum_probs=78.4
Q ss_pred ceEEeccccchHHHHHHhhcCCC-ceEEEeccCCCCCChhhHHhcCcccccccCCCCCCCCC-CcccEEEEccccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFD-CWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESK 333 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~-~~~~~v~~~~~~~~~~~~~~rg~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~~ 333 (402)
.+|||+|||+|..+-+-++.|+. |..+++.|..-..+.+-+...|+-..+.- . .....+ ..||+|.|.-+..-
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v-~-~~~~~~~~~~dlvvANI~~~v--- 237 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEV-S-LSEDLVEGKFDLVVANILADV--- 237 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE-S-CTSCTCCS-EEEEEEES-HHH---
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE-E-EecccccccCCEEEECCCHHH---
Confidence 36999999999999888888873 34444444332333334444455222210 0 112344 79999999833222
Q ss_pred cCCHHHHHHHhhhhccCCcEEEEEeC-hhhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEec
Q 015704 334 RCNMSTIMLEMDRMLRPGGHVYIRDS-IDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADKR 398 (402)
Q Consensus 334 ~~~~~~~l~e~~RvLrpgG~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 398 (402)
+..++..+.+.|||||++|+|-= .+..+.+.+.+++ .|++.....++ .=..|.++|+
T Consensus 238 ---L~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~~----~W~~l~~~Kk 295 (295)
T PF06325_consen 238 ---LLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREEG----EWVALVFKKK 295 (295)
T ss_dssp ---HHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEET----TEEEEEEEE-
T ss_pred ---HHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEEC----CEEEEEEEeC
Confidence 24677788999999999999952 2335666777777 88887776652 2334555553
No 190
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.75 E-value=5.9e-08 Score=88.77 Aligned_cols=104 Identities=16% Similarity=0.080 Sum_probs=78.7
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHH------------HHHcCCCcEEEeccccCCCCC---C
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQF------------ALERGAPAMVAAFATRRLPYP---S 72 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~------------a~~~~~~~~~~~~d~~~lp~~---~ 72 (402)
++.+||+.|||.|.-+..|+++ .|+|+|+|+..+.....+. ...++....+.++|..+++.. .
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 4579999999999999999987 8999999987765543211 011233456777887777632 2
Q ss_pred CCeeEEEecCcccccccCh-HHHHHHHHHhcCCCeEEEEEeC
Q 015704 73 QAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 73 ~sfDlI~s~~~~~~~~~d~-~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+.||+|+-..++++++++. .+..+.+.++|+|||.+++.++
T Consensus 123 ~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 123 PVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred CCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 6899999777777877664 6899999999999999888754
No 191
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.75 E-value=5.9e-08 Score=92.63 Aligned_cols=134 Identities=17% Similarity=0.239 Sum_probs=89.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccc-cCCCCCCCCC-CcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMH-DWCEPFDTYP-RTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~-~~~~~~~~~~-~sfD~v~~~ 325 (402)
.+|||+|||+|.++..|+....+ ..|+++| ++.+++.+.+. |+ +..++ ++. .+++ ..||+|+|.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~---~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~---~~~~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPN---AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLF---EPLAGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchh---ccCcCCCccEEEEC
Confidence 36999999999999999987421 2566666 45666655543 33 22332 333 2345 489999995
Q ss_pred -------------cccccccccC---------CHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHH-hcCce-EEEee
Q 015704 326 -------------GLFSVESKRC---------NMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGK-AMGWH-VTLRE 381 (402)
Q Consensus 326 -------------~~~~~~~~~~---------~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~-~~~w~-~~~~~ 381 (402)
.++.|.+..+ .+..++.+..+.|+|||++++.-.......+++++. ...|. +....
T Consensus 190 PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~ 269 (284)
T TIGR00536 190 PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGR 269 (284)
T ss_pred CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEec
Confidence 2333432111 245788999999999999999887777778888766 45664 44544
Q ss_pred cCCCCCCceEEEEEEec
Q 015704 382 TAEGPHASYRILTADKR 398 (402)
Q Consensus 382 ~~~~~~~~~~~l~~~k~ 398 (402)
+.. +.+++++++++
T Consensus 270 D~~---g~~R~~~~~~~ 283 (284)
T TIGR00536 270 DLN---GKERVVLGFYH 283 (284)
T ss_pred CCC---CCceEEEEEec
Confidence 432 47888888764
No 192
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.75 E-value=7.9e-08 Score=91.78 Aligned_cols=99 Identities=16% Similarity=0.176 Sum_probs=69.3
Q ss_pred CeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 12 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
.+|||+|||+|.++..++.. .++++|+++..+..+. +.++..+.. ..+...|... +++.++||+|+|+....
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~-~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAE-ENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 68999999999988888753 7999999988776655 344444443 3455556433 34445899999974332
Q ss_pred ccc------------c------------ChHHHHHHHHHhcCCCeEEEEEe
Q 015704 86 NWT------------R------------DDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 86 ~~~------------~------------d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.-. + ....++.++.+.|+|||++++..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 110 0 12467888999999999999985
No 193
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.73 E-value=4e-08 Score=88.74 Aligned_cols=114 Identities=14% Similarity=0.235 Sum_probs=73.3
Q ss_pred eEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCC-CCCCcccEEEEcc
Q 015704 257 NVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFD-TYPRTYDLLHAAG 326 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~-~~~~sfD~v~~~~ 326 (402)
.|||+|||+|.++..++.. +. ...|+.+| ++.+++.+.++ |+ +..+......+. ..+.+||.|++..
T Consensus 43 ~vlDlG~GtG~~s~~~a~~~~~---~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 43 MILDIGCGTGSVTVEASLLVGE---TGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred EEEEeCCcCCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 5999999999999988754 21 12566666 45566554332 42 222222122212 2236899999853
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEe-ChhhHHHHHHHHHhcCceEEE
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD-SIDVMDELQEIGKAMGWHVTL 379 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~-~~~~~~~~~~~~~~~~w~~~~ 379 (402)
. ..++..+|.++.|+|||||++++.. ..+...++...++...++..+
T Consensus 120 ---~---~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~~~ 167 (198)
T PRK00377 120 ---G---SEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFNLEI 167 (198)
T ss_pred ---C---cccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCeEE
Confidence 1 2356899999999999999999843 334556666677776766544
No 194
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.73 E-value=6.9e-08 Score=97.42 Aligned_cols=104 Identities=21% Similarity=0.245 Sum_probs=74.1
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC--CCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--YPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp--~~~~sfDlI~s~~ 82 (402)
.++.+|||+|||+|..+..+++. .++++|+++.++..++ +.+...+....+...|...++ ++.++||.|++..
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~-~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVR-ENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 35679999999999988877653 6899999998876655 444555555556666766543 3457899999643
Q ss_pred ccc-----------ccccC----------hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRI-----------NWTRD----------DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~-----------~~~~d----------~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
... .|... ...++.++.++|||||.++++|-
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 211 12111 13689999999999999999973
No 195
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.73 E-value=5e-08 Score=93.93 Aligned_cols=99 Identities=15% Similarity=0.155 Sum_probs=69.9
Q ss_pred CeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 12 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
.+|||+|||+|.++..++.. .++++|+++.++..+. +.++..+.. ..+...|... ++++++||+|+|+....
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~-~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAE-INIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 68999999999998888754 7999999998886665 444444543 3455556432 23456899999975432
Q ss_pred cc------------cc--------C----hHHHHHHHHHhcCCCeEEEEEe
Q 015704 86 NW------------TR--------D----DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 86 ~~------------~~--------d----~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.. .+ + ...+++++.+.|+|||.+++..
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 11 00 0 1467899999999999999985
No 196
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.72 E-value=1.9e-08 Score=97.54 Aligned_cols=104 Identities=20% Similarity=0.264 Sum_probs=68.4
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHc----------CCCcEEEeccccC------CCC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALER----------GAPAMVAAFATRR------LPY 70 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~----------~~~~~~~~~d~~~------lp~ 70 (402)
++.+|||+|||-|.-...+... .++|+|++...+.++..+...-. .....+...|... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6789999999987655544433 78999999988887776552111 1223344444221 222
Q ss_pred CCCCeeEEEecCcccccccCh---HHHHHHHHHhcCCCeEEEEEeC
Q 015704 71 PSQAFDLIHCSRCRINWTRDD---GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 71 ~~~sfDlI~s~~~~~~~~~d~---~~~l~e~~r~LkpgG~li~~~~ 113 (402)
....||+|-|..++|+...+. ..+|+.+.+.|+|||+|+.+++
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 235999999988866665554 4689999999999999999974
No 197
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.72 E-value=1.2e-07 Score=89.93 Aligned_cols=102 Identities=21% Similarity=0.214 Sum_probs=67.9
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
++.+|||+|||+|.++..++.. .++++|+++..+..+.............+...|... ++++++||+|+|+....
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYI 186 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcC
Confidence 5578999999999988877653 689999998777555433221111223455555422 23357899999975433
Q ss_pred ccc------c-------------------ChHHHHHHHHHhcCCCeEEEEEe
Q 015704 86 NWT------R-------------------DDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 86 ~~~------~-------------------d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
... . ....+++++.++|+|||++++..
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 210 0 01457788889999999999974
No 198
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.71 E-value=5.2e-08 Score=84.94 Aligned_cols=80 Identities=13% Similarity=0.086 Sum_probs=60.3
Q ss_pred eEEeCCccchHHHHHHHHHHc---CCCcEEEeccccCCCCCCCCeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEE
Q 015704 34 ITMSIAPKDVHENQIQFALER---GAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAW 110 (402)
Q Consensus 34 ~~vdi~~~~~~~a~~~~a~~~---~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~ 110 (402)
+|+|+++.|+..+..+..... .....+..+|++++|+++++||+|+++.++ |+..|+..++++++|+|||||.+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l-~~~~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGL-RNVVDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchh-hcCCCHHHHHHHHHHHcCcCeEEEE
Confidence 378999888866543222111 112457778899999999999999988764 4445899999999999999999998
Q ss_pred EeCC
Q 015704 111 AAQP 114 (402)
Q Consensus 111 ~~~~ 114 (402)
..+.
T Consensus 80 ~d~~ 83 (160)
T PLN02232 80 LDFN 83 (160)
T ss_pred EECC
Confidence 8643
No 199
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=1.8e-07 Score=88.89 Aligned_cols=110 Identities=21% Similarity=0.251 Sum_probs=75.0
Q ss_pred eEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCCCCCCCCeeEEEecCccccc
Q 015704 13 VVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 13 ~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
+|||+|||||.++..++.. .|+++|+++..+.-+. +.+...+.... +...| -++--.++||+|+||...+.-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~-~Na~~~~l~~~~~~~~d--lf~~~~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAR-ENAERNGLVRVLVVQSD--LFEPLRGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHH-HHHHHcCCccEEEEeee--cccccCCceeEEEeCCCCCCC
Confidence 7999999999999888765 7999999998776665 55556665332 22222 122122489999998766554
Q ss_pred c----------cCh--------------HHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHH
Q 015704 88 T----------RDD--------------GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWK 127 (402)
Q Consensus 88 ~----------~d~--------------~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~ 127 (402)
. .+| ..++.++.+.|+|||.+++.. ..+....+.+.+.
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~--g~~q~~~v~~~~~ 251 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI--GLTQGEAVKALFE 251 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE--CCCcHHHHHHHHH
Confidence 3 011 256788999999999999985 4455454444443
No 200
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.69 E-value=1.3e-07 Score=89.69 Aligned_cols=134 Identities=23% Similarity=0.345 Sum_probs=83.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc---Cc---ccccccCCCCCCCCC-CcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR---GL---IGVMHDWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r---g~---~~~~~~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
.+|||+|||+|.++..++.... ...++.+| ++.+++.+.+. +. +..++.- .+.+++ .+||+|+|.--
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~---~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d--~~~~~~~~~fD~Iv~npP 184 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERP---DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGD--WFEPLPGGRFDLIVSNPP 184 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEcc--ccCcCCCCceeEEEECCC
Confidence 3599999999999999998742 23566666 45566555543 22 2223211 123344 79999998421
Q ss_pred c------c--------cccc---------cCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCce-EEEeecC
Q 015704 328 F------S--------VESK---------RCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWH-VTLRETA 383 (402)
Q Consensus 328 ~------~--------~~~~---------~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~-~~~~~~~ 383 (402)
+ . |.+. ......++.++.++|||||++++.-.......++.++.+..|. +....+
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d- 263 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKD- 263 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecC-
Confidence 1 1 1100 0113478888999999999999976555566788888777775 333332
Q ss_pred CCCCCceEEEEEEe
Q 015704 384 EGPHASYRILTADK 397 (402)
Q Consensus 384 ~~~~~~~~~l~~~k 397 (402)
. .+..++++++|
T Consensus 264 ~--~~~~r~~~~~~ 275 (275)
T PRK09328 264 L--AGRDRVVLGRR 275 (275)
T ss_pred C--CCCceEEEEEC
Confidence 2 25788888764
No 201
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.68 E-value=2.9e-08 Score=95.48 Aligned_cols=99 Identities=12% Similarity=0.110 Sum_probs=67.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc------Cc-ccccccCCCCCCCCCC-----cccEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR------GL-IGVMHDWCEPFDTYPR-----TYDLL 322 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r------g~-~~~~~~~~~~~~~~~~-----sfD~v 322 (402)
.+|||+|||+|.++..|++... ...+++++| ++.|++.+.++ ++ +..+..-.....+++. ...++
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~--~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALR--QPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhc--cCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 4599999999999999988731 124788988 78888877665 12 2112221122122332 23456
Q ss_pred EEccccccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 323 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
++.+.+.|+. +.+...+|.++.+.|+|||.|+|.
T Consensus 143 ~~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 143 FPGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 6667788876 445678999999999999999986
No 202
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.68 E-value=7.2e-08 Score=90.03 Aligned_cols=120 Identities=23% Similarity=0.346 Sum_probs=78.1
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc--ccccccCCCCCCCCC-CcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMHDWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
.+|||+|||+|.++..+++... ..+++.+| ++.+++.+.. .|+ +..++... +.+++ ++||+|+|.--
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~--~~~~~~~~fD~Vi~npP 163 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERP---DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDW--FEPLPGGKFDLIVSNPP 163 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch--hccCcCCceeEEEECCC
Confidence 3699999999999999998732 12566666 4555554433 243 23333211 23455 79999999432
Q ss_pred cc------ccccc-----------------CCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEe
Q 015704 328 FS------VESKR-----------------CNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLR 380 (402)
Q Consensus 328 ~~------~~~~~-----------------~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 380 (402)
+. ++... .....++.++.|+|||||.+++.........+++++++-.|+....
T Consensus 164 y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 164 YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADVET 239 (251)
T ss_pred CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCceEE
Confidence 21 11110 0023678999999999999999877666778888888888865443
No 203
>PRK00811 spermidine synthase; Provisional
Probab=98.68 E-value=2.1e-07 Score=88.75 Aligned_cols=103 Identities=13% Similarity=0.066 Sum_probs=69.3
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHc-----CCCcEEEeccccC-CCCCCCCeeEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER-----GAPAMVAAFATRR-LPYPSQAFDLI 78 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~-----~~~~~~~~~d~~~-lp~~~~sfDlI 78 (402)
.++++||++|||+|..+..+++. +++++|+++..+..+...+..-. .....+...|... ++...++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 35789999999999999888765 68899999877755543322111 1122344555332 23345789999
Q ss_pred EecCcccccccC----hHHHHHHHHHhcCCCeEEEEEe
Q 015704 79 HCSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 79 ~s~~~~~~~~~d----~~~~l~e~~r~LkpgG~li~~~ 112 (402)
++... .++... ...+++.+.+.|+|||.+++..
T Consensus 155 i~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 97532 333222 1577899999999999999864
No 204
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.67 E-value=6.3e-08 Score=86.08 Aligned_cols=85 Identities=21% Similarity=0.308 Sum_probs=56.4
Q ss_pred CCeEEEECCccchhHHHHccC-CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccccccc
Q 015704 11 LRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR 89 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~-~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~~~ 89 (402)
...|.|+|||.+.++..+... .|...|+... ...+..+|+..+|++++++|++++..++ ...
T Consensus 73 ~~viaD~GCGdA~la~~~~~~~~V~SfDLva~---------------n~~Vtacdia~vPL~~~svDv~VfcLSL--MGT 135 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAP---------------NPRVTACDIANVPLEDESVDVAVFCLSL--MGT 135 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S---EEEEESS-S---------------STTEEES-TTS-S--TT-EEEEEEES-----SS
T ss_pred CEEEEECCCchHHHHHhcccCceEEEeeccCC---------------CCCEEEecCccCcCCCCceeEEEEEhhh--hCC
Confidence 358999999999999887654 6788887653 1235667899999999999999976442 234
Q ss_pred ChHHHHHHHHHhcCCCeEEEEEe
Q 015704 90 DDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 90 d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
|...++.|+.|+|||||.|.|+.
T Consensus 136 n~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 136 NWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcHHHHHHHHheeccCcEEEEEE
Confidence 78999999999999999999985
No 205
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.67 E-value=4.2e-07 Score=82.68 Aligned_cols=136 Identities=16% Similarity=0.293 Sum_probs=92.8
Q ss_pred hhhHHhhHHHHHHHHHHHHhc-ccCCCC-------------cceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCCh
Q 015704 228 ELFKAESKYWNEIIESYVRAL-HWKKMK-------------LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTL 293 (402)
Q Consensus 228 ~~~~~~~~~w~~~~~~y~~~~-~~~~~~-------------~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~ 293 (402)
+-|+++-..+..+-+.|.... .|+.+- -..|-|+|||-+-+|.. ....|..+++++..+.
T Consensus 140 ~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~~---~~~kV~SfDL~a~~~~--- 213 (325)
T KOG3045|consen 140 DLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIASS---ERHKVHSFDLVAVNER--- 213 (325)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhhc---cccceeeeeeecCCCc---
Confidence 567888888888888776443 333221 12399999999988872 2224788888887643
Q ss_pred hhHHhcCcccccccCCCCCCCCC-CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeChh---hHHHHHHH
Q 015704 294 PVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID---VMDELQEI 369 (402)
Q Consensus 294 ~~~~~rg~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~---~~~~~~~~ 369 (402)
=..-++ .. .|.+ +|.|++++-..|+- .++.+.++|..|||||||.++|.+-.. .....-+.
T Consensus 214 ------V~~cDm----~~-vPl~d~svDvaV~CLSLMg----tn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~ 278 (325)
T KOG3045|consen 214 ------VIACDM----RN-VPLEDESVDVAVFCLSLMG----TNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRA 278 (325)
T ss_pred ------eeeccc----cC-CcCccCcccEEEeeHhhhc----ccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHH
Confidence 111111 11 2344 89999888744432 467899999999999999999997442 24456667
Q ss_pred HHhcCceEEEeecCC
Q 015704 370 GKAMGWHVTLRETAE 384 (402)
Q Consensus 370 ~~~~~w~~~~~~~~~ 384 (402)
+.+|.+.+...+..+
T Consensus 279 l~~lGF~~~~~d~~n 293 (325)
T KOG3045|consen 279 LTKLGFDVKHKDVSN 293 (325)
T ss_pred HHHcCCeeeehhhhc
Confidence 889999988877654
No 206
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.65 E-value=6.3e-08 Score=87.94 Aligned_cols=92 Identities=20% Similarity=0.089 Sum_probs=58.9
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc---ccccccCCCCCCCCCCcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL---IGVMHDWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~---~~~~~~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
.|||+|||+|.+++.|++.-. ....|+.+| ++++++.+.+ .|+ +..++.-.....+...+||+|++...+
T Consensus 75 ~VLDiG~GsG~~~~~la~~~~--~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 152 (205)
T PRK13944 75 KILEVGTGSGYQAAVCAEAIE--RRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAA 152 (205)
T ss_pred EEEEECcCccHHHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccCc
Confidence 599999999999988886510 011455555 3455544443 243 333432222212212699999999777
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
.|++ .|+.|+|||||++++...
T Consensus 153 ~~~~---------~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 153 STIP---------SALVRQLKDGGVLVIPVE 174 (205)
T ss_pred chhh---------HHHHHhcCcCcEEEEEEc
Confidence 6644 478899999999999643
No 207
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.65 E-value=5.9e-08 Score=76.22 Aligned_cols=95 Identities=22% Similarity=0.308 Sum_probs=63.5
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHH---hcCc---ccccccCCCCCCCCC-CcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIY---DRGL---IGVMHDWCEPFDTYP-RTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~---~rg~---~~~~~~~~~~~~~~~-~sfD~v~~~~~~ 328 (402)
+|||+|||.|.++..+++.+ ...+..+| +++.+..+. ..+. +..++.........+ .+||+|++..++
T Consensus 1 ~ildig~G~G~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALASGP----GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC----CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccce
Confidence 38999999999999998731 12455555 333443333 1111 333333223323223 799999999999
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
++. ......++..+.+.|||||+++++
T Consensus 77 ~~~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHL--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeh--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 884 224689999999999999999987
No 208
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.64 E-value=1.4e-07 Score=93.18 Aligned_cols=135 Identities=13% Similarity=0.147 Sum_probs=85.7
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-ccccc-cCCCCCCCCCCcccEEEEccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMH-DWCEPFDTYPRTYDLLHAAGLFS 329 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~-~~~~~~~~~~~sfD~v~~~~~~~ 329 (402)
+|||+|||+|.++..|+.... ..+|+++| ++.+++.+.++ |. +..++ ++.+...+...+||+|+|.-=..
T Consensus 254 rVLDLGcGSG~IaiaLA~~~p---~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALERP---DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred EEEEEeChhhHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 699999999999999886521 12566776 56677665543 33 33333 22222111125899999953110
Q ss_pred -----ccc-------------c-cC---CHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEE-EeecCCCC
Q 015704 330 -----VES-------------K-RC---NMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVT-LRETAEGP 386 (402)
Q Consensus 330 -----~~~-------------~-~~---~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~~~ 386 (402)
++. . .. .+..++.+..+.|||||++++--..+..+.+++++++..|+.. ...+..
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~-- 408 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLA-- 408 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCC--
Confidence 000 0 00 0236677778899999999997777778899999988888643 444332
Q ss_pred CCceEEEEEEe
Q 015704 387 HASYRILTADK 397 (402)
Q Consensus 387 ~~~~~~l~~~k 397 (402)
+.++++++++
T Consensus 409 -G~dR~v~~~~ 418 (423)
T PRK14966 409 -GLDRVTLGKY 418 (423)
T ss_pred -CCcEEEEEEE
Confidence 4788888775
No 209
>PRK14967 putative methyltransferase; Provisional
Probab=98.63 E-value=1.9e-07 Score=85.91 Aligned_cols=117 Identities=20% Similarity=0.288 Sum_probs=70.0
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc-ccccc-cCCCCCCCCC-CcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL-IGVMH-DWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~-~~~~~-~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
..|||+|||+|.++..++..++ ..|+.+| ++.++..+.+ .|+ +..++ ++. ..++ ++||+|++.--
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~----~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~---~~~~~~~fD~Vi~npP 110 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA----GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWA---RAVEFRPFDVVVSNPP 110 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC----CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchh---hhccCCCeeEEEECCC
Confidence 3599999999999999998753 1455555 4455554433 243 22222 222 1245 79999999743
Q ss_pred cccccc------------------cCCHHHHHHHhhhhccCCcEEEEEeChh-hHHHHHHHHHhcCceEEE
Q 015704 328 FSVESK------------------RCNMSTIMLEMDRMLRPGGHVYIRDSID-VMDELQEIGKAMGWHVTL 379 (402)
Q Consensus 328 ~~~~~~------------------~~~~~~~l~e~~RvLrpgG~~~~~~~~~-~~~~~~~~~~~~~w~~~~ 379 (402)
+..-.. ...+..++.++.|+|||||.+++..+.. ....+...+++-.|++..
T Consensus 111 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 181 (223)
T PRK14967 111 YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEV 181 (223)
T ss_pred CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEE
Confidence 221110 0114568889999999999999853321 233444445555555444
No 210
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.62 E-value=6.5e-08 Score=93.17 Aligned_cols=93 Identities=11% Similarity=0.135 Sum_probs=63.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCccc------ccc-cC-CCCCCCCCCcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIG------VMH-DW-CEPFDTYPRTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~------~~~-~~-~~~~~~~~~sfD~v~~~~ 326 (402)
.+|||+|||+|.++..|+++|+ +|+++| +++|++.+.++.--. ... .+ +.++..++++||+|.|..
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~-----~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~ 220 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGA-----IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLD 220 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcC
Confidence 3699999999999999999986 677877 678887777663100 000 00 112233457999999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEE
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVY 355 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~ 355 (402)
++.|+++. ....++..+.++ .|||.++
T Consensus 221 vL~H~p~~-~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 221 VLIHYPQD-KADGMIAHLASL-AEKRLII 247 (315)
T ss_pred EEEecCHH-HHHHHHHHHHhh-cCCEEEE
Confidence 99998752 334566667654 5655544
No 211
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.61 E-value=9.9e-08 Score=85.81 Aligned_cols=104 Identities=25% Similarity=0.356 Sum_probs=71.8
Q ss_pred cCCCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcE-EEeccccC-CC--CCCCCeeEE
Q 015704 7 WIRLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRR-LP--YPSQAFDLI 78 (402)
Q Consensus 7 ~~~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~~-lp--~~~~sfDlI 78 (402)
++.....+||||||.|.+...++.. .++|+|+...-+..+. +.+.+.++.+. +...|+.. ++ ++++++|.|
T Consensus 14 f~~~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~-~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i 92 (195)
T PF02390_consen 14 FGNDNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKAL-RKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRI 92 (195)
T ss_dssp HTSCCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHH-HHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEE
T ss_pred cCCCCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHH-HHHHhhcccceEEEEccHHHHHhhcccCCchheE
Confidence 3444458999999999998888754 7999999987776665 44445566654 55556544 22 457899999
Q ss_pred EecCcccccccCh--------HHHHHHHHHhcCCCeEEEEEe
Q 015704 79 HCSRCRINWTRDD--------GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 79 ~s~~~~~~~~~d~--------~~~l~e~~r~LkpgG~li~~~ 112 (402)
+.+.. -.|+... ..++..++++|+|||.+.+.|
T Consensus 93 ~i~FP-DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 93 YINFP-DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp EEES------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCC-CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 97654 5554321 589999999999999999997
No 212
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.61 E-value=3.7e-07 Score=85.50 Aligned_cols=100 Identities=20% Similarity=0.212 Sum_probs=67.5
Q ss_pred CCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccC-CCC-CCCCeeEEEecCcc
Q 015704 11 LRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-LPY-PSQAFDLIHCSRCR 84 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~-lp~-~~~sfDlI~s~~~~ 84 (402)
+.+|||+|||+|.++..++.. .++++|+++.++..++ +.+...+. .+...|..+ ++. ..++||+|+++...
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~-~N~~~~~~--~~~~~D~~~~l~~~~~~~fDlVv~NPPy 163 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCAR-RNLADAGG--TVHEGDLYDALPTALRGRVDILAANAPY 163 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCC--EEEEeechhhcchhcCCCEeEEEECCCC
Confidence 358999999999998877643 6899999988776655 33333332 345555432 221 13579999998754
Q ss_pred cccc---------------------cC----hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 85 INWT---------------------RD----DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~~---------------------~d----~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.... .+ ...++..+.++|+|||.+++.+.
T Consensus 164 ~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 164 VPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred CCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 4211 01 13667778899999999999863
No 213
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.60 E-value=9.4e-08 Score=87.44 Aligned_cols=91 Identities=22% Similarity=0.057 Sum_probs=57.9
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCCCcccEEEEccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYPRTYDLLHAAGLFS 329 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~~sfD~v~~~~~~~ 329 (402)
.|||+|||+|.+++.|++... ....|+++| ++.+++.+.++ |+ +..++.......+-...||+|++.....
T Consensus 80 ~VLDiG~GsG~~a~~la~~~~--~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~ 157 (215)
T TIGR00080 80 KVLEIGTGSGYQAAVLAEIVG--RDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAGP 157 (215)
T ss_pred EEEEECCCccHHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCCcc
Confidence 599999999999999998742 112355555 45556555433 43 3333322221111126899999885443
Q ss_pred cccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 330 VESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+ +..++.+.|||||++++.-
T Consensus 158 ~---------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 158 K---------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred c---------ccHHHHHhcCcCcEEEEEE
Confidence 3 4456889999999999863
No 214
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.60 E-value=3e-07 Score=82.87 Aligned_cols=107 Identities=16% Similarity=0.173 Sum_probs=65.5
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc--ccccccCCCC-CCCCCCcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMHDWCEP-FDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~~~~~~-~~~~~~sfD~v~~~~~~ 328 (402)
.|||+|||+|.++..++.... ...|+.+| ++.+++.+.+ .|+ +..++...+. +......+|.++...
T Consensus 43 ~VLDiG~G~G~~~~~la~~~~---~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~-- 117 (196)
T PRK07402 43 VLWDIGAGTGTIPVEAGLLCP---KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG-- 117 (196)
T ss_pred EEEEeCCCCCHHHHHHHHHCC---CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC--
Confidence 599999999999999876431 12566666 4556655443 243 2333322211 111223467665531
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhc
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAM 373 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~ 373 (402)
...+..++.++.|+|||||++++.... +....+.+.++.+
T Consensus 118 -----~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~ 158 (196)
T PRK07402 118 -----GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQL 158 (196)
T ss_pred -----CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhc
Confidence 224679999999999999999998765 2334455555554
No 215
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.58 E-value=2.8e-07 Score=93.06 Aligned_cols=104 Identities=16% Similarity=0.163 Sum_probs=70.8
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEE--EeccccCCCC--CCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMV--AAFATRRLPY--PSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~--~~~d~~~lp~--~~~sfDlI~s 80 (402)
.++.+|||+|||+|..+..+++. .++++|+++..+..+. +.++..+....+ ...|....++ +.++||.|++
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~-~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVY-ENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 35679999999999888776653 7999999998776655 444445555333 3444443333 4578999995
Q ss_pred c----C-cccccccC----------------hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 81 S----R-CRINWTRD----------------DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 81 ~----~-~~~~~~~d----------------~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
. . ..++-.++ ...+|.++.++|||||.++++|-
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 2 1 11111111 24689999999999999999974
No 216
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.58 E-value=1.7e-07 Score=86.03 Aligned_cols=93 Identities=19% Similarity=0.276 Sum_probs=71.0
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
...++||||+|.|..+..++.. .|.+.++|..| ....+++|.... +..+..-.+.+||+|.|.++ +.-
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~M-----r~rL~~kg~~vl----~~~~w~~~~~~fDvIscLNv-LDR 163 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPM-----RWRLSKKGFTVL----DIDDWQQTDFKFDVISCLNV-LDR 163 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHH-----HHHHHhCCCeEE----ehhhhhccCCceEEEeehhh-hhc
Confidence 4568999999999999999875 78888888655 355556765432 21223223468999999877 555
Q ss_pred ccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 88 TRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 88 ~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+.+|..+|+++++.|+|+|.++++.
T Consensus 164 c~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 164 CDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred cCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 6689999999999999999999984
No 217
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.56 E-value=1.8e-07 Score=82.25 Aligned_cols=96 Identities=16% Similarity=0.111 Sum_probs=65.6
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
++.+|||+|||+|.++..++++ .++++|+++.++........ . .....+...|+..+++++.+||.|+++.. ++.
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~-~-~~~v~ii~~D~~~~~~~~~~~d~vi~n~P-y~~ 89 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFA-A-ADNLTVIHGDALKFDLPKLQPYKVVGNLP-YNI 89 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhc-c-CCCEEEEECchhcCCccccCCCEEEECCC-ccc
Confidence 4569999999999999999876 78999999866644432221 1 12344667788888877778999998755 443
Q ss_pred ccChHHHHHHHHHh--cCCCeEEEEE
Q 015704 88 TRDDGILLLEVNRM--LRAGGYFAWA 111 (402)
Q Consensus 88 ~~d~~~~l~e~~r~--LkpgG~li~~ 111 (402)
. ...+..+.+. +.++|.+++.
T Consensus 90 ~---~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 90 S---TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred H---HHHHHHHHhcCCCcceEEEEEE
Confidence 2 2333333322 4588888887
No 218
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.56 E-value=3.4e-07 Score=86.42 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=71.5
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
.++.+|||+|||+|..+..+++. .++++|+++..+.... +.++..+... .+...|...++...++||.|++..
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~-~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLI-ANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHH-HHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 46679999999999988776542 6999999988776555 3444445443 355556655555556799999632
Q ss_pred ccc-------------cccc--------ChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRI-------------NWTR--------DDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~-------------~~~~--------d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
... .+.. ....+|.++.+.|||||+++.+|-
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 111 0111 113588999999999999999974
No 219
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.56 E-value=2e-07 Score=85.70 Aligned_cols=92 Identities=18% Similarity=0.302 Sum_probs=71.9
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-ccccccCCCCCCCCCCcccEEEEccccccc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYPRTYDLLHAAGLFSVE 331 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~ 331 (402)
+..++||+|||-|+.+..|+..=. .|.+.+ +..|...-.+||. +-...+|.+ -+..||+|-|-|||-.-
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~-----~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~----~~~~fDvIscLNvLDRc 164 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK-----EVYATEASPPMRWRLSKKGFTVLDIDDWQQ----TDFKFDVISCLNVLDRC 164 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc-----eEEeecCCHHHHHHHHhCCCeEEehhhhhc----cCCceEEEeehhhhhcc
Confidence 566799999999999999987643 566666 5678877778898 323334432 13689999999988663
Q ss_pred cccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 332 SKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 332 ~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
. .|..+|.+|++.|||+|.+++.
T Consensus 165 ~---~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 165 D---RPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred C---CHHHHHHHHHHHhCCCCEEEEE
Confidence 3 4789999999999999999998
No 220
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.56 E-value=2.2e-07 Score=94.25 Aligned_cols=103 Identities=16% Similarity=0.245 Sum_probs=71.8
Q ss_pred CCCCeEEEECCccchhHHHHcc-----CCceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCCCCCeeEEEec-
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCS- 81 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~-----~~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~lp~~~~sfDlI~s~- 81 (402)
.++.+|||+|||+|..+..+++ ..++++|+++.++..+. +.+++.+... .+...|+..++ ++++||.|++.
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~-~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~ 326 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIR-SHASALGITIIETIEGDARSFS-PEEQPDAILLDA 326 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-HHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcC
Confidence 3567999999999987766653 26999999998886665 4455556543 45566666554 45789999952
Q ss_pred ---Cccc-------ccccC----------hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 82 ---RCRI-------NWTRD----------DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 82 ---~~~~-------~~~~d----------~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.... .|..+ ...+|.++.+.|||||.++++|.
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 1100 11111 13589999999999999999974
No 221
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.56 E-value=3.5e-07 Score=87.26 Aligned_cols=121 Identities=21% Similarity=0.213 Sum_probs=77.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEEc-
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAA- 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~~- 325 (402)
.+|||+|||+|.++..++.+.. ...|+++| ++.+++.+.+. |+ +..++.-. +.++| .+||+|+|.
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~---~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~--~~~~~~~~fD~Iv~NP 197 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFP---EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL--FAALPGRKYDLIVSNP 197 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch--hhccCCCCccEEEECC
Confidence 4699999999999999998742 12566666 45666655443 44 33333211 12345 589999995
Q ss_pred -----ccccccc-------cc---------CCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEeec
Q 015704 326 -----GLFSVES-------KR---------CNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 326 -----~~~~~~~-------~~---------~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
..+.++. .. .....++.++.++|||||++++.-..+. ..+++++....|.....++
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~~~~~ 274 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWLEFEN 274 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCceeeecC
Confidence 1111111 00 0124778999999999999999766544 6788888776665554443
No 222
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.55 E-value=7e-07 Score=79.52 Aligned_cols=109 Identities=18% Similarity=0.162 Sum_probs=76.3
Q ss_pred HHhcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCccccc--ccCCCCCCCCCCcccE
Q 015704 245 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVM--HDWCEPFDTYPRTYDL 321 (402)
Q Consensus 245 ~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~--~~~~~~~~~~~~sfD~ 321 (402)
.+++..+.+.-+-|||||||+|.-++.|.+.|. ..+++| ++.||+.|.+|-+-|.+ .+--|.+|+=|.|||-
T Consensus 41 LELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh-----~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg 115 (270)
T KOG1541|consen 41 LELLALPGPKSGLILDIGCGSGLSGSVLSDSGH-----QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDG 115 (270)
T ss_pred HHHhhCCCCCCcEEEEeccCCCcchheeccCCc-----eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccce
Confidence 345556654555699999999999999999996 455666 67899999987553222 2445665644599999
Q ss_pred EEEccccccc---cccCC-HH----HHHHHhhhhccCCcEEEEEe
Q 015704 322 LHAAGLFSVE---SKRCN-MS----TIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 322 v~~~~~~~~~---~~~~~-~~----~~l~e~~RvLrpgG~~~~~~ 358 (402)
|++-..+.-+ ...++ |. ..+.-+..+|++|+..++.=
T Consensus 116 ~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 116 VISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred EEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 9887655432 22222 22 34666889999999999983
No 223
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.55 E-value=3.7e-07 Score=92.31 Aligned_cols=104 Identities=18% Similarity=0.184 Sum_probs=73.0
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCC----CCCCCeeEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP----YPSQAFDLI 78 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~lp----~~~~sfDlI 78 (402)
.++.+|||+|||+|..+..+++. .++++|++..++.... +.++..+... .+...|...++ +..++||.|
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~-~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQ-ENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHH-HHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 35679999999999888777653 6999999988776655 4445556543 45566766655 445789999
Q ss_pred EecCc-----ccccccC----------------hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 79 HCSRC-----RINWTRD----------------DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 79 ~s~~~-----~~~~~~d----------------~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++... .++-.++ ...++.++.+.|||||.++.+|-
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 96321 1111111 24679999999999999999974
No 224
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.55 E-value=4.5e-07 Score=91.46 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=72.6
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCC-CCCCCeeEEEec
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP-YPSQAFDLIHCS 81 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~lp-~~~~sfDlI~s~ 81 (402)
.++.+|||+|||+|..+.+++.. .++++|+++..+.... +.+.+.+... .+...|...++ +.+++||.|++.
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~-~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVE-KHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 35679999999999877766542 7999999998886665 4445556543 45566766655 446789999963
Q ss_pred Ccc---cccccC------------------hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 82 RCR---INWTRD------------------DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 82 ~~~---~~~~~d------------------~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
... -.+..+ ..++|.++.+.|||||.++++|-
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 367 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC 367 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 221 111111 14568899999999999999973
No 225
>PRK04457 spermidine synthase; Provisional
Probab=98.54 E-value=3.2e-07 Score=86.41 Aligned_cols=104 Identities=13% Similarity=0.154 Sum_probs=66.7
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcC-CCcEEEeccccC-CCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG-APAMVAAFATRR-LPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~-~~~~~~~~d~~~-lp~~~~sfDlI~s~~ 82 (402)
.++.+|||||||+|.++..++.. .++++|+++..+..+...+..... ....+...|... ++-..++||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 45679999999999998877654 688999988766444322211111 122345555322 222246899999753
Q ss_pred cc-ccccc--ChHHHHHHHHHhcCCCeEEEEEe
Q 015704 83 CR-INWTR--DDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 83 ~~-~~~~~--d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.- ..... ....+++++.+.|+|||.+++..
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 11 11111 12689999999999999999963
No 226
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=1.1e-05 Score=76.15 Aligned_cols=129 Identities=19% Similarity=0.319 Sum_probs=78.5
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCccc--ccccCCCCCCCCCCcccEEEEccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGLIG--VMHDWCEPFDTYPRTYDLLHAAGLFS 329 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~~~--~~~~~~~~~~~~~~sfD~v~~~~~~~ 329 (402)
+|||+|||+|-++..|++++. ...|+-+| +...++.+.+ .++-+ ++++. -+.+-+.+||+|+|.-=|+
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p---~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~--~~~~v~~kfd~IisNPPfh 235 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSP---QAKLTLVDVNARAVESARKNLAANGVENTEVWASN--LYEPVEGKFDLIISNPPFH 235 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCC---CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEec--ccccccccccEEEeCCCcc
Confidence 799999999999999999963 23444444 2333333322 23322 23321 1122235999999986665
Q ss_pred cccccC--CHHHHHHHhhhhccCCcEEEEEeCh--hhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEec
Q 015704 330 VESKRC--NMSTIMLEMDRMLRPGGHVYIRDSI--DVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADKR 398 (402)
Q Consensus 330 ~~~~~~--~~~~~l~e~~RvLrpgG~~~~~~~~--~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 398 (402)
--.+.. --..++.+-.+-|+|||.++|--+- .....|++... ++..-... ++.+||-++|.
T Consensus 236 ~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v~~la~~----~gf~Vl~a~k~ 300 (300)
T COG2813 236 AGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NVEVLAKN----GGFKVLRAKKA 300 (300)
T ss_pred CCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CEEEEEeC----CCEEEEEEecC
Confidence 433210 0137888889999999999887542 33556666555 33333322 36888888873
No 227
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.54 E-value=1.4e-07 Score=84.64 Aligned_cols=103 Identities=15% Similarity=0.157 Sum_probs=63.0
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
...++||.|+|.|+++..++.. .|-.+|..+..+..+.............+.+..+++...+.++||+|++..++.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 4568999999999999988765 4444455444333332111111111123444455555444579999999999999
Q ss_pred cccC-hHHHHHHHHHhcCCCeEEEEEe
Q 015704 87 WTRD-DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 87 ~~~d-~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+.++ ...+|+++...|+|+|++++-.
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 8854 5799999999999999999974
No 228
>PHA03412 putative methyltransferase; Provisional
Probab=98.54 E-value=3.1e-07 Score=83.89 Aligned_cols=91 Identities=9% Similarity=0.119 Sum_probs=62.1
Q ss_pred CCeEEEECCccchhHHHHccC-------CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 11 LRVVMDAGCGVASFGAYLLPR-------NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~-------~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
+.+|||+|||+|.++..++.+ .++++|+++.++ +.+++......+...|+...++ +++||+|++|..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al-----~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPP 123 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYY-----KLGKRIVPEATWINADALTTEF-DTLFDMAISNPP 123 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHH-----HHHHhhccCCEEEEcchhcccc-cCCccEEEECCC
Confidence 579999999999988766532 688888887654 4444433334566667655554 468999999977
Q ss_pred cccccc----------C-hHHHHHHHHHhcCCCeE
Q 015704 84 RINWTR----------D-DGILLLEVNRMLRAGGY 107 (402)
Q Consensus 84 ~~~~~~----------d-~~~~l~e~~r~LkpgG~ 107 (402)
+..... . ...++..+.+++++|+.
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 663221 1 24578888887777775
No 229
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.53 E-value=2.5e-07 Score=90.16 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=71.6
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCC-CcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP-RTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~-~sfD~v~~~~~~ 328 (402)
.|||.|||+|++...++..+. .+.++| ++.+++.+..+ |+ +..++.-...++ ++ ++||+|++.-=+
T Consensus 185 ~vLDp~cGtG~~lieaa~~~~-----~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~-~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 185 RVLDPFCGTGGFLIEAGLMGA-----KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP-LSSESVDAIATDPPY 258 (329)
T ss_pred EEEECCCCCCHHHHHHHHhCC-----eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC-cccCCCCEEEECCCC
Confidence 599999999999988877776 556666 45555543322 43 223333333333 34 799999995211
Q ss_pred c---ccc---ccCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCc
Q 015704 329 S---VES---KRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGW 375 (402)
Q Consensus 329 ~---~~~---~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w 375 (402)
. ... .......+|.|+.|+|||||++++--+.. ..+++.+++-.|
T Consensus 259 g~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 259 GRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred cCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 1 111 01124689999999999999998876652 245567777777
No 230
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.52 E-value=8.1e-08 Score=83.70 Aligned_cols=71 Identities=21% Similarity=0.172 Sum_probs=53.9
Q ss_pred cCC-CCCChhhHHhcCc---------ccccccCCCCCCCCC-CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEE
Q 015704 286 PVS-GFNTLPVIYDRGL---------IGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHV 354 (402)
Q Consensus 286 ~~~-~~~~~~~~~~rg~---------~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~ 354 (402)
++| +++|++.|.+|.- +..+..-.+.++ |+ ++||+|.+..++.|+.+ +..+|.|+.|+|||||.+
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~v~~~~~l~~~~d---~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP-FDDCEFDAVTMGYGLRNVVD---RLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC-CCCCCeeEEEecchhhcCCC---HHHHHHHHHHHcCcCeEE
Confidence 345 5778887755411 445555556654 66 79999999999998864 589999999999999999
Q ss_pred EEEeCh
Q 015704 355 YIRDSI 360 (402)
Q Consensus 355 ~~~~~~ 360 (402)
++.|-.
T Consensus 78 ~i~d~~ 83 (160)
T PLN02232 78 SILDFN 83 (160)
T ss_pred EEEECC
Confidence 988743
No 231
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.52 E-value=1.9e-07 Score=84.76 Aligned_cols=96 Identities=17% Similarity=0.111 Sum_probs=60.6
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
+++.+|||||||+|+++..++.. .|+++|..+.....+..... ..+.. ..+..+|...-.-+...||.|+++.
T Consensus 71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~-~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~ 149 (209)
T PF01135_consen 71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLA-RLGIDNVEVVVGDGSEGWPEEAPFDRIIVTA 149 (209)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHH-HHTTHSEEEEES-GGGTTGGG-SEEEEEESS
T ss_pred CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHH-HhccCceeEEEcchhhccccCCCcCEEEEee
Confidence 46789999999999988777643 47899998865555543333 33443 4456666433222346899999875
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
..- +. -..+.+.|++||++++-.
T Consensus 150 a~~----~i---p~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 150 AVP----EI---PEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp BBS----S-----HHHHHTEEEEEEEEEEE
T ss_pred ccc----hH---HHHHHHhcCCCcEEEEEE
Confidence 532 21 244677799999999974
No 232
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.52 E-value=1.4e-07 Score=83.02 Aligned_cols=118 Identities=23% Similarity=0.366 Sum_probs=68.1
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc--ccccc-cCCCCCCCCC-CcccEEEEc
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMH-DWCEPFDTYP-RTYDLLHAA 325 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~-~~~~~~~~~~-~sfD~v~~~ 325 (402)
-.+|||+|||+|.++..++.++.+. .|+.+| ++.+++.+.+ .++ +..++ ++. ...+ ..||+|+|.
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~---~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~---~~~~~~~fD~Iv~N 105 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDA---KVTAVDINPDALELAKRNAERNGLENVEVVQSDLF---EALPDGKFDLIVSN 105 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCE---EEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTT---TTCCTTCEEEEEE-
T ss_pred CCeEEEecCChHHHHHHHHHhCCCC---EEEEEcCCHHHHHHHHHHHHhcCcccccccccccc---ccccccceeEEEEc
Confidence 3459999999999999999987642 255555 3445544433 233 22333 433 3344 899999998
Q ss_pred cccccccc--cCCHHHHHHHhhhhccCCcEEEEE--eChhhHHHHHHHHHhcCceEEEeec
Q 015704 326 GLFSVESK--RCNMSTIMLEMDRMLRPGGHVYIR--DSIDVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 326 ~~~~~~~~--~~~~~~~l~e~~RvLrpgG~~~~~--~~~~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
-=+.--.+ ......++.+..+.|||||.+++- ........+++... ++.....
T Consensus 106 PP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~----~~~~~~~ 162 (170)
T PF05175_consen 106 PPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG----DVEVVAK 162 (170)
T ss_dssp --SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS------EEEEE
T ss_pred cchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC----CEEEEEE
Confidence 44332221 112468899999999999988543 33333333444333 5554443
No 233
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.52 E-value=4.4e-07 Score=87.70 Aligned_cols=95 Identities=13% Similarity=-0.007 Sum_probs=66.1
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
++.+|||+|||+|.++..+++. .|+++|+++.++..+. +.++..+... .+...|....+.+.++||+|++...
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar-~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g 158 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK-RNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVG 158 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEeCChhhcccccCCccEEEECCc
Confidence 5679999999999998888753 3899999987776554 3344445443 3455565544444568999997643
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.. .....+.+.|+|||.+++..
T Consensus 159 ~~-------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 159 VD-------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hH-------HhHHHHHHhcCCCCEEEEEe
Confidence 22 22345678999999998863
No 234
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.52 E-value=3.6e-07 Score=88.00 Aligned_cols=113 Identities=22% Similarity=0.211 Sum_probs=71.8
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~~~ 326 (402)
.+|||+|||+|.++..|+.... ...|+++| ++.+++.+.+. |+ +..++.-. +..+| ++||+|+|.-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p---~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~--~~~l~~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP---DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDL--FAALPGRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC---CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECch--hhhCCCCCccEEEECC
Confidence 4699999999999999998732 23566777 56666555443 43 33343211 12345 6899999961
Q ss_pred ------cc-------cccccc---------CCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcC
Q 015704 327 ------LF-------SVESKR---------CNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMG 374 (402)
Q Consensus 327 ------~~-------~~~~~~---------~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~ 374 (402)
-+ .|.+.. .....++.+..++|||||++++.-..+ ...++.++....
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~~ 278 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDVP 278 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhCC
Confidence 11 121110 012478899999999999999975544 345777766543
No 235
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.50 E-value=2e-07 Score=86.69 Aligned_cols=102 Identities=19% Similarity=0.251 Sum_probs=72.3
Q ss_pred cCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcCccccc-ccCCCCCCCCCCcccEEEEcccc
Q 015704 250 WKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVM-HDWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 250 ~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg~~~~~-~~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
..+++.+.|+|+|+|.|.++..++++..++. ++-.|-+..++.+.+..-+..+ ++.. .++|. +|+++..+||
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~---~~v~Dlp~v~~~~~~~~rv~~~~gd~f---~~~P~-~D~~~l~~vL 168 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAYPNLR---ATVFDLPEVIEQAKEADRVEFVPGDFF---DPLPV-ADVYLLRHVL 168 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHSTTSE---EEEEE-HHHHCCHHHTTTEEEEES-TT---TCCSS-ESEEEEESSG
T ss_pred ccccCccEEEeccCcchHHHHHHHHHCCCCc---ceeeccHhhhhccccccccccccccHH---hhhcc-ccceeeehhh
Confidence 3466788999999999999999998865443 3333434444444443223222 2322 45778 9999999999
Q ss_pred ccccccCCHHHHHHHhhhhccCC--cEEEEEeC
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPG--GHVYIRDS 359 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpg--G~~~~~~~ 359 (402)
+++.+. +...+|+.+.+.|+|| |.++|-|.
T Consensus 169 h~~~d~-~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 169 HDWSDE-DCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp GGS-HH-HHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hhcchH-HHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 999863 5689999999999999 99999974
No 236
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=5.6e-07 Score=80.52 Aligned_cols=95 Identities=15% Similarity=0.134 Sum_probs=63.9
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCC-CCCeeEEEecCcc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYP-SQAFDLIHCSRCR 84 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~-~~sfDlI~s~~~~ 84 (402)
+++.+|||||||+|+.+..|++. +|+.+|..+.-...+. +.....+.. ..+.++|.. ..++ ...||.|+.+...
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~-~~L~~lg~~nV~v~~gDG~-~G~~~~aPyD~I~Vtaaa 148 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQAR-RNLETLGYENVTVRHGDGS-KGWPEEAPYDRIIVTAAA 148 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHH-HHHHHcCCCceEEEECCcc-cCCCCCCCcCEEEEeecc
Confidence 46789999999999999888775 7888888775443333 223344553 345555532 2233 4789999987553
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
-..+ ..+.+.||+||.+++-.
T Consensus 149 ~~vP-------~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 149 PEVP-------EALLDQLKPGGRLVIPV 169 (209)
T ss_pred CCCC-------HHHHHhcccCCEEEEEE
Confidence 3322 34567799999999874
No 237
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.50 E-value=5.2e-07 Score=81.05 Aligned_cols=129 Identities=18% Similarity=0.274 Sum_probs=82.7
Q ss_pred CCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHh-----cCccc-ccccCCCCCCCCCCcccEEEEcc
Q 015704 253 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYD-----RGLIG-VMHDWCEPFDTYPRTYDLLHAAG 326 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~-----rg~~~-~~~~~~~~~~~~~~sfD~v~~~~ 326 (402)
......||.|||.|..+..|...-+ ..++++.. .+..++.|.+ .+-++ .+..-.+.+.|-+..||+|++.=
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f--~~VDlVEp-~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW 130 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVF--DEVDLVEP-VEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQW 130 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC---SEEEEEES--HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES
T ss_pred CCcceEEecccccchhHHHHHHHhc--CEeEEecc-CHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehH
Confidence 3567799999999999999876644 33344333 2344555542 22223 33333445444447999999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeCh----------------hhHHHHHHHHHhcCceEEEeecCCC
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI----------------DVMDELQEIGKAMGWHVTLRETAEG 385 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~----------------~~~~~~~~~~~~~~w~~~~~~~~~~ 385 (402)
++.||.|. +....|+--..-|||||.+++.|+. -..+.++.+.++=..++...+...+
T Consensus 131 ~lghLTD~-dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~ 204 (218)
T PF05891_consen 131 CLGHLTDE-DLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKG 204 (218)
T ss_dssp -GGGS-HH-HHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT
T ss_pred hhccCCHH-HHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccC
Confidence 99999975 7889999999999999999999753 1167888899999999888766544
No 238
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.50 E-value=4.6e-07 Score=83.05 Aligned_cols=99 Identities=19% Similarity=0.264 Sum_probs=77.1
Q ss_pred CeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCC-CcEEEeccccCC---CCCCCCeeEEEecCc
Q 015704 12 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRL---PYPSQAFDLIHCSRC 83 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~-~~~~~~~d~~~l---p~~~~sfDlI~s~~~ 83 (402)
..+||||||.|.+...++++ .++|+|+...-+..+. +.+.+.++ +..+.+.|+..+ -+++++.|-|+.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l-~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKAL-KKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHH-HHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 58999999999999888876 7999999987765554 66777788 566776664332 245569999997655
Q ss_pred ccccccCh--------HHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTRDD--------GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~d~--------~~~l~e~~r~LkpgG~li~~~ 112 (402)
-.|+... ..+++.+.++|+|||.|.+.|
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 6665432 478999999999999999997
No 239
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.49 E-value=3.4e-07 Score=83.54 Aligned_cols=92 Identities=20% Similarity=0.086 Sum_probs=57.8
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCC-CcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
.+|||+|||+|.+++.|+.... ....|+.+| ++++++.+.++ |+ +..++..... ...+ ..||+|++...
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~--~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~-~~~~~~~fD~I~~~~~ 154 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVG--KSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTL-GYEENAPYDRIYVTAA 154 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc-CCCcCCCcCEEEECCC
Confidence 3599999999999998887621 112455555 34566555443 33 3333332221 1123 69999999865
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
+.+ +..++.+.|||||.+++-..
T Consensus 155 ~~~---------~~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 155 GPD---------IPKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred ccc---------chHHHHHhhCCCcEEEEEEc
Confidence 543 23466779999999999643
No 240
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.47 E-value=4.8e-07 Score=82.34 Aligned_cols=84 Identities=23% Similarity=0.309 Sum_probs=65.2
Q ss_pred CCeEEEECCccchhHHHHccCCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccccccC
Q 015704 11 LRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRD 90 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~~~d 90 (402)
...|.|+|||.+.++..- ...|...|+... ...+..+|+.++|+++++.|++++.. --...|
T Consensus 181 ~~vIaD~GCGEakiA~~~-~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDvaV~CL--SLMgtn 242 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIASSE-RHKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDVAVFCL--SLMGTN 242 (325)
T ss_pred ceEEEecccchhhhhhcc-ccceeeeeeecC---------------CCceeeccccCCcCccCcccEEEeeH--hhhccc
Confidence 457999999999877511 126777777643 22356678999999999999999643 334458
Q ss_pred hHHHHHHHHHhcCCCeEEEEEe
Q 015704 91 DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 91 ~~~~l~e~~r~LkpgG~li~~~ 112 (402)
...++.|++|+|++||.+.+..
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEe
Confidence 8999999999999999999984
No 241
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=1.4e-06 Score=82.69 Aligned_cols=130 Identities=20% Similarity=0.334 Sum_probs=84.5
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCccc--ccc-cCCCCCCCCCCcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGLIG--VMH-DWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~~~--~~~-~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
+|||+|||+|..|.+|+..+. ..+|+++| ++..+..|.+ .|+.. .++ +|. ...+..||+|+|.=
T Consensus 113 ~ilDlGTGSG~iai~la~~~~---~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf---~~~~~~fDlIVsNP-- 184 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP---DAEVIAVDISPDALALARENAERNGLVRVLVVQSDLF---EPLRGKFDLIVSNP-- 184 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc---CCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecc---cccCCceeEEEeCC--
Confidence 799999999999999999864 24566666 5555554433 35411 111 333 33445999999952
Q ss_pred cccccc----------CC--------------HHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCc-e-EEEeec
Q 015704 329 SVESKR----------CN--------------MSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGW-H-VTLRET 382 (402)
Q Consensus 329 ~~~~~~----------~~--------------~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w-~-~~~~~~ 382 (402)
-|++.. -+ ...++.+..++|+|||.+++.-.-.....+++++....+ . +..+..
T Consensus 185 PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~~~~v~~~~d 264 (280)
T COG2890 185 PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGFFEIVETLKD 264 (280)
T ss_pred CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCCceEEEEEec
Confidence 111111 01 237888899999999999999886678888999888884 3 233332
Q ss_pred CCCCCCceEEEEEEe
Q 015704 383 AEGPHASYRILTADK 397 (402)
Q Consensus 383 ~~~~~~~~~~l~~~k 397 (402)
-.+.+++..+++
T Consensus 265 ---~~g~~rv~~~~~ 276 (280)
T COG2890 265 ---LFGRDRVVLAKL 276 (280)
T ss_pred ---CCCceEEEEEEe
Confidence 224666666654
No 242
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.45 E-value=3.9e-07 Score=82.26 Aligned_cols=110 Identities=15% Similarity=0.256 Sum_probs=78.4
Q ss_pred hcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc------ccccccCCCCCCCC---C
Q 015704 247 ALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL------IGVMHDWCEPFDTY---P 316 (402)
Q Consensus 247 ~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~------~~~~~~~~~~~~~~---~ 316 (402)
+++........||.+|||.|...--|.+...+ ...-|-+.| +++.+.+..++-- -..+++.+.+-... +
T Consensus 64 l~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n-~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~ 142 (264)
T KOG2361|consen 64 LLPVDEKSAETILEVGCGVGNTVFPLLKTSPN-NRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEE 142 (264)
T ss_pred hhCccccChhhheeeccCCCcccchhhhcCCC-CCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCc
Confidence 33433333337999999999988888777543 224555666 6666665555422 34555555443222 3
Q ss_pred CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 317 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 317 ~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
.|+|+|.+--||+.+++ ..+..++..+.|+|||||.+++||
T Consensus 143 ~svD~it~IFvLSAi~p-ek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 143 GSVDIITLIFVLSAIHP-EKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred CccceEEEEEEEeccCh-HHHHHHHHHHHHHhCCCcEEEEee
Confidence 79999999999999884 467899999999999999999997
No 243
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.45 E-value=1.1e-06 Score=87.54 Aligned_cols=113 Identities=12% Similarity=0.040 Sum_probs=73.0
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC---cEEEeccccCC----CCCCCCeeEEE
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRRL----PYPSQAFDLIH 79 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~---~~~~~~d~~~l----p~~~~sfDlI~ 79 (402)
++.+|||+|||+|.++...+.. .++++|+++..+..+. +.+..++.. ..+..+|+... ....++||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~-~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIAR-QNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4679999999999987664432 7899999998886665 444445543 34556664332 11246899999
Q ss_pred ecCccccccc--------ChHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHH
Q 015704 80 CSRCRINWTR--------DDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQE 123 (402)
Q Consensus 80 s~~~~~~~~~--------d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~ 123 (402)
++...+.-.. +...++..+.++|+|||.++.++-...-+..++.
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~ 350 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQ 350 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHH
Confidence 9866432211 1234556678999999999987533333333333
No 244
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.44 E-value=1.7e-06 Score=82.02 Aligned_cols=103 Identities=14% Similarity=0.074 Sum_probs=65.7
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcC----CCcEEEeccccC-CCCCCCCeeEEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG----APAMVAAFATRR-LPYPSQAFDLIH 79 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~----~~~~~~~~d~~~-lp~~~~sfDlI~ 79 (402)
.++++||++|||+|.++..+++. .++++|+++..+..+...+....+ ....+...|... +....++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 35669999999999988877654 588899988766544432222111 112233333211 222247899999
Q ss_pred ecCcccccccC----hHHHHHHHHHhcCCCeEEEEEe
Q 015704 80 CSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 80 s~~~~~~~~~d----~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+... .+.... ...+++.+.+.|+|||.+++..
T Consensus 151 ~D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 151 VDST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EeCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 7543 222212 2578899999999999999874
No 245
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.42 E-value=9.4e-07 Score=89.71 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=70.7
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCC--CCCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP--YPSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~lp--~~~~sfDlI~s 80 (402)
.++.+|||+|||+|..+..+++. .++++|+++..+..+. +.+...+... .+...|...++ ++ ++||+|++
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~-~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~ 326 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIE-ENAKRLGLTNIETKALDARKVHEKFA-EKFDKILV 326 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEE
Confidence 35679999999999988777653 6999999987775554 4444555543 45556665543 33 68999997
Q ss_pred cCcccc-----------cccC----------hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 81 SRCRIN-----------WTRD----------DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 81 ~~~~~~-----------~~~d----------~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
...... |... ...++.++.++|||||.++.+|.
T Consensus 327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 532110 1101 13578999999999999999863
No 246
>PRK01581 speE spermidine synthase; Validated
Probab=98.42 E-value=1.5e-06 Score=84.27 Aligned_cols=103 Identities=16% Similarity=0.096 Sum_probs=65.6
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHH--HH--HHc---CCCcEEEeccccC-CCCCCCCee
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQ--FA--LER---GAPAMVAAFATRR-LPYPSQAFD 76 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~--~a--~~~---~~~~~~~~~d~~~-lp~~~~sfD 76 (402)
.++.+||++|||+|..++.+++. .++++|+++.++..+... .. ... .....+...|... ++...++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 45689999999999888877764 688888887666444310 00 000 1122344455332 333457899
Q ss_pred EEEecCccccccc---C--hHHHHHHHHHhcCCCeEEEEEe
Q 015704 77 LIHCSRCRINWTR---D--DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 77 lI~s~~~~~~~~~---d--~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+|++... ..... . -..+++.+.+.|+|||.++...
T Consensus 229 VIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9997632 21110 1 1568999999999999998874
No 247
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.42 E-value=1.1e-06 Score=82.31 Aligned_cols=124 Identities=19% Similarity=0.213 Sum_probs=76.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Ccccccc-cCCCCCCC-CCCcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GLIGVMH-DWCEPFDT-YPRTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~~~~~~-~~~~~~~~-~~~sfD~v~~~~~~ 328 (402)
.+|||+|||+|.++..+++... ...|+.+| ++.+++.+.+. |. ..+. ++.+.++. +..+||+|++.-=+
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~---~~~v~~vDis~~al~~A~~N~~~~~~-~~~~~D~~~~l~~~~~~~fDlVv~NPPy 163 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALD---GIELHAADIDPAAVRCARRNLADAGG-TVHEGDLYDALPTALRGRVDILAANAPY 163 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHcCC-EEEEeechhhcchhcCCCEeEEEECCCC
Confidence 3699999999999999987521 12455665 45555544432 32 2222 22222221 23579999986311
Q ss_pred ------ccccc-------c------CC----HHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEeecC
Q 015704 329 ------SVESK-------R------CN----MSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETA 383 (402)
Q Consensus 329 ------~~~~~-------~------~~----~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 383 (402)
..+++ . .+ +..++....++|||||++++.-..+....+...+++..|+..+..++
T Consensus 164 ~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~ 241 (251)
T TIGR03704 164 VPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSE 241 (251)
T ss_pred CCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEcc
Confidence 11110 0 00 23677777899999999999876666778888888777776666554
No 248
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.40 E-value=2.2e-06 Score=79.04 Aligned_cols=127 Identities=17% Similarity=0.240 Sum_probs=86.7
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc---ccccccCCCCCCC-CC-CcccEEEE
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL---IGVMHDWCEPFDT-YP-RTYDLLHA 324 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~---~~~~~~~~~~~~~-~~-~sfD~v~~ 324 (402)
.+.|||+|||.|..+-.|+++--+ ..|++++ .+.+.+.|.+ .++ +.++|+-...+.. .+ .+||+|+|
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~---a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEK---AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCC---CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 677999999999999999998322 3455544 2333333322 122 4555433222222 34 57999999
Q ss_pred cccc---------------ccccccCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEeecCC
Q 015704 325 AGLF---------------SVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAE 384 (402)
Q Consensus 325 ~~~~---------------~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 384 (402)
.-=+ .|..-.|+.+++++=-.++|||||++.+--+.+....+-..+++.+|......-.+
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~i~~V~ 196 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRIQFVY 196 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceEEEEec
Confidence 5221 12233467789999999999999999999999999999999999999977654433
No 249
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.39 E-value=8.5e-08 Score=78.56 Aligned_cols=97 Identities=24% Similarity=0.350 Sum_probs=59.9
Q ss_pred eEEeccccchHHHHHHhhcC-CCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCC-CCC-CcccEEEEc
Q 015704 257 NVLDMRAGFGGFAAALIEQK-FDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFD-TYP-RTYDLLHAA 325 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~-~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~-~~~-~sfD~v~~~ 325 (402)
+|||+|||.|.++.++++.+ . +++.+| .+..++.+..+ ++ +..++.....+. .++ ++||+|+++
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~~~-----~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRGAA-----RVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHCTC-----EEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred EEEEcCcchHHHHHHHHHHCCC-----eEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEEC
Confidence 59999999999999999987 5 444444 23334333332 22 222221111222 355 899999998
Q ss_pred ccccccc-c----cCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 326 GLFSVES-K----RCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 326 ~~~~~~~-~----~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
--+.... . ......++.++.|+|||||.+++--
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 7776421 1 1134588999999999999998754
No 250
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.38 E-value=1.3e-06 Score=77.56 Aligned_cols=143 Identities=19% Similarity=0.220 Sum_probs=72.7
Q ss_pred cCCCCcceEEeccccchHHHHHHhhcC---CCceEEEeccCCCCCChhhHHhcCccc---ccccCCCCCCCCCCcccEEE
Q 015704 250 WKKMKLRNVLDMRAGFGGFAAALIEQK---FDCWVMNVVPVSGFNTLPVIYDRGLIG---VMHDWCEPFDTYPRTYDLLH 323 (402)
Q Consensus 250 ~~~~~~~~vLD~g~g~G~~~~~l~~~~---~~~~~~~v~~~~~~~~~~~~~~rg~~~---~~~~~~~~~~~~~~sfD~v~ 323 (402)
...+.-.+|||+||++|+|+..+.+++ ..|+.+++.+.+....+... +|-+. ......+.+..-...||+|.
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceec
Confidence 445566789999999999999999997 43444454444211111111 11110 01011111111115899999
Q ss_pred Ecccccccccc--------CCHHHHHHHhhhhccCCcEEEEEe-----ChhhHHHHHHHHHhcCceEEEeecCCCCCCce
Q 015704 324 AAGLFSVESKR--------CNMSTIMLEMDRMLRPGGHVYIRD-----SIDVMDELQEIGKAMGWHVTLRETAEGPHASY 390 (402)
Q Consensus 324 ~~~~~~~~~~~--------~~~~~~l~e~~RvLrpgG~~~~~~-----~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 390 (402)
|........++ ......|.=+.+.|||||.+++.- ..+....++...+.+++- .+.. ..+...|
T Consensus 97 ~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~--Kp~~-sr~~s~E 173 (181)
T PF01728_consen 97 SDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIV--KPPS-SRSESSE 173 (181)
T ss_dssp E-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEE--E-TT-SBTTCBE
T ss_pred cccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEE--ECcC-CCCCccE
Confidence 98643322110 011244444457899999999862 234555666655554332 2221 2355679
Q ss_pred EEEEEEe
Q 015704 391 RILTADK 397 (402)
Q Consensus 391 ~~l~~~k 397 (402)
.+|+|+.
T Consensus 174 ~Ylv~~~ 180 (181)
T PF01728_consen 174 EYLVCRG 180 (181)
T ss_dssp EEEESEE
T ss_pred EEEEEcC
Confidence 9999874
No 251
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.37 E-value=7.9e-07 Score=81.08 Aligned_cols=88 Identities=22% Similarity=0.185 Sum_probs=58.4
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCC--CcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP--RTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~--~sfD~v~~~~ 326 (402)
.+|||+|||+|.++..|+..+. .|..+| ++++++.+.++ |+ +...+.-. ...++ .+||+|++..
T Consensus 80 ~~VLeiG~GsG~~t~~la~~~~-----~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~--~~~~~~~~~fD~I~~~~ 152 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHLVR-----RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDG--WKGWPAYAPFDRILVTA 152 (212)
T ss_pred CEEEEECCCccHHHHHHHHHhC-----EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCc--ccCCCcCCCcCEEEEcc
Confidence 3599999999999998887753 455555 35555555443 33 33333211 12233 6899999986
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
.+.++ ..++.+.|||||.+++.-.
T Consensus 153 ~~~~~---------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 153 AAPEI---------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred Cchhh---------hHHHHHhcCCCcEEEEEEc
Confidence 55443 4567899999999998744
No 252
>PLN02366 spermidine synthase
Probab=98.37 E-value=2.9e-06 Score=81.62 Aligned_cols=103 Identities=16% Similarity=0.083 Sum_probs=65.8
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHc----CCCcEEEeccccC-CC-CCCCCeeEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER----GAPAMVAAFATRR-LP-YPSQAFDLI 78 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~----~~~~~~~~~d~~~-lp-~~~~sfDlI 78 (402)
.++++||+||||.|..+..+++. +++.+|+++..+..+...+.... .....+...|... +. .++++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 45789999999999999888765 57778888765544432222111 1122344555321 11 235689999
Q ss_pred EecCcccccccC----hHHHHHHHHHhcCCCeEEEEEe
Q 015704 79 HCSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 79 ~s~~~~~~~~~d----~~~~l~e~~r~LkpgG~li~~~ 112 (402)
++... .++... ...+++.+.+.|+|||.++...
T Consensus 170 i~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 97532 332221 1468999999999999998753
No 253
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.36 E-value=4.7e-06 Score=73.06 Aligned_cols=97 Identities=20% Similarity=0.142 Sum_probs=70.7
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcE-EEeccc-cCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM-VAAFAT-RRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~-~~lp~~~~sfDlI~s~~ 82 (402)
.++.+++|+|||||+++..++.. +++++|-++..+.... +.+++.+.++. +..+++ +.++ ...+||.|+...
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~-~N~~~fg~~n~~vv~g~Ap~~L~-~~~~~daiFIGG 110 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIE-RNAARFGVDNLEVVEGDAPEALP-DLPSPDAIFIGG 110 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHH-HHHHHhCCCcEEEEeccchHhhc-CCCCCCEEEECC
Confidence 46789999999999999887722 8999998887665444 45555566655 344443 2233 112799999654
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
. .+.+..++.+...|||||.++...
T Consensus 111 g-----~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 111 G-----GNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred C-----CCHHHHHHHHHHHcCcCCeEEEEe
Confidence 3 356899999999999999999984
No 254
>PRK04457 spermidine synthase; Provisional
Probab=98.36 E-value=1.9e-06 Score=81.28 Aligned_cols=100 Identities=15% Similarity=0.165 Sum_probs=64.1
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc-Cc------ccccccC-CCCCCCCCCcccEEEE
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR-GL------IGVMHDW-CEPFDTYPRTYDLLHA 324 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r-g~------~~~~~~~-~~~~~~~~~sfD~v~~ 324 (402)
..++|||+|||.|.++..++.... ...|+.+| .+.+++.+.+. ++ +..++.- .+-+...+.+||+|++
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p---~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLP---DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCC---CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 345799999999999999987632 23566666 46677766654 21 2222221 1112334578999998
Q ss_pred ccccccc--cccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 325 AGLFSVE--SKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 325 ~~~~~~~--~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
.. +... +....-...+.++.++|+|||.+++-
T Consensus 143 D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 143 DG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred eC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 52 3211 11111269999999999999999983
No 255
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.34 E-value=1.4e-06 Score=77.86 Aligned_cols=100 Identities=17% Similarity=0.269 Sum_probs=61.9
Q ss_pred CeEEEECCccchhHHHHccC--C--ceEEeCCccchHHHHHHHHHHcCCCcEE--EeccccC--CCC------CCCCeeE
Q 015704 12 RVVMDAGCGVASFGAYLLPR--N--VITMSIAPKDVHENQIQFALERGAPAMV--AAFATRR--LPY------PSQAFDL 77 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~--~--v~~vdi~~~~~~~a~~~~a~~~~~~~~~--~~~d~~~--lp~------~~~sfDl 77 (402)
.+|||||||||..+.++++. . ..-.|...... ........+.+.+++. ...|+.. .|. ..++||.
T Consensus 27 ~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~-~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 27 TRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLR-PSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred ceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHH-hhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 36999999999888888776 2 21223332211 1112333444443321 1123222 222 3568999
Q ss_pred EEecCcccccccC--hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 78 IHCSRCRINWTRD--DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 78 I~s~~~~~~~~~d--~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+|.++ +|+.+- ...+|+.+.++|++||.|++..+
T Consensus 106 i~~~N~-lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 106 IFCINM-LHISPWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred eeehhH-HHhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 999877 666533 36899999999999999999853
No 256
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=4.1e-06 Score=76.72 Aligned_cols=96 Identities=21% Similarity=0.184 Sum_probs=70.9
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCc--EEEeccccCCCCCCCCeeEEEec
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRLPYPSQAFDLIHCS 81 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~--~~~~~d~~~lp~~~~sfDlI~s~ 81 (402)
.++.+|||.|.|+|.++.+|+.. .++..|+.......|..+.. +.++.. .+...|+.+.-+++ .||.|+.-
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~-~~~l~d~v~~~~~Dv~~~~~~~-~vDav~LD 170 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLS-EFGLGDRVTLKLGDVREGIDEE-DVDAVFLD 170 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHH-HhccccceEEEecccccccccc-ccCEEEEc
Confidence 36789999999999999999843 78888888766655543333 334433 34445655554444 89999953
Q ss_pred CcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 82 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 82 ~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
. ++|..++..+.+.|+|||.+++-.
T Consensus 171 -----m-p~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 171 -----L-PDPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred -----C-CChHHHHHHHHHHhCCCcEEEEEc
Confidence 2 388999999999999999999985
No 257
>PRK03612 spermidine synthase; Provisional
Probab=98.33 E-value=2.6e-06 Score=88.06 Aligned_cols=103 Identities=15% Similarity=0.029 Sum_probs=66.8
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHH--HHHHc-----CCCcEEEeccccC-CCCCCCCee
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQ--FALER-----GAPAMVAAFATRR-LPYPSQAFD 76 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~--~a~~~-----~~~~~~~~~d~~~-lp~~~~sfD 76 (402)
.++++|||+|||+|..+..+.+. +++.+|+++..+..++.. ...-+ +....+...|... +...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 45689999999999998887754 688888887666444321 10000 1122344555433 222347899
Q ss_pred EEEecCcccccccCh-----HHHHHHHHHhcCCCeEEEEEe
Q 015704 77 LIHCSRCRINWTRDD-----GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 77 lI~s~~~~~~~~~d~-----~~~l~e~~r~LkpgG~li~~~ 112 (402)
+|+++.. .+..... ..+++.+.+.|||||.+++..
T Consensus 376 vIi~D~~-~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLP-DPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCC-CCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 9998643 3322211 468899999999999999975
No 258
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.32 E-value=2.2e-06 Score=77.45 Aligned_cols=102 Identities=16% Similarity=0.326 Sum_probs=65.2
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHH---HcC-CC------------------------
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFAL---ERG-AP------------------------ 57 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~---~~~-~~------------------------ 57 (402)
.+..+|||||.+|.++..+++. .+.|+||++.-+..|...... ..+ ..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 4568999999999988888764 799999998766544321100 000 00
Q ss_pred ------cE------EEeccccCCCCCCCCeeEEEecC----cccccccC-hHHHHHHHHHhcCCCeEEEEE
Q 015704 58 ------AM------VAAFATRRLPYPSQAFDLIHCSR----CRINWTRD-DGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 58 ------~~------~~~~d~~~lp~~~~sfDlI~s~~----~~~~~~~d-~~~~l~e~~r~LkpgG~li~~ 111 (402)
+. +.....+-+.+....||+|+|-. +.+.|.++ ...+|+.+.++|.|||+|++.
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 00 00000011223456799999843 23445544 478999999999999999998
No 259
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.32 E-value=1.5e-06 Score=79.45 Aligned_cols=98 Identities=17% Similarity=0.177 Sum_probs=68.3
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCC----------------CcEEEeccccCCCCC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA----------------PAMVAAFATRRLPYP 71 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~----------------~~~~~~~d~~~lp~~ 71 (402)
++.+||..|||.|.-...|+++ .|+|+|+++..+..+. .+++. ...+.++|.-.++..
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~----~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAF----EENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHH----HHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHH----HHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 4569999999999999999988 7999999986554332 22221 123456676665533
Q ss_pred C-CCeeEEEecCcccccccCh-HHHHHHHHHhcCCCeEEEEE
Q 015704 72 S-QAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 72 ~-~sfDlI~s~~~~~~~~~d~-~~~l~e~~r~LkpgG~li~~ 111 (402)
. ++||+|+=..++..++++. .+..+.+.++|+|||.+++.
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 3 5799999766656665553 78999999999999995444
No 260
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.30 E-value=1.1e-06 Score=79.11 Aligned_cols=123 Identities=17% Similarity=0.233 Sum_probs=73.3
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCCC--CCChhhHHhcCc--ccccccCCCC-CCC-CC-CcccEEEEcccc-
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG--FNTLPVIYDRGL--IGVMHDWCEP-FDT-YP-RTYDLLHAAGLF- 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~--~~~~~~~~~rg~--~~~~~~~~~~-~~~-~~-~sfD~v~~~~~~- 328 (402)
.+||||||.|.|...+|.+..+...+.|..... ......+..+|+ +..++.-+.. +.. ++ +|+|-|+..-==
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 699999999999999999876544444433321 233455555566 4444432222 111 34 899998875100
Q ss_pred ----ccccccCCHHHHHHHhhhhccCCcEEEEEeC-hhhHHHHHHHHHh--cCceEEE
Q 015704 329 ----SVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-IDVMDELQEIGKA--MGWHVTL 379 (402)
Q Consensus 329 ----~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~-~~~~~~~~~~~~~--~~w~~~~ 379 (402)
.|...|=--...|.++.|+|||||.+.+... ....+.+.+.+.. -.++...
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE-
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEcc
Confidence 1222111114899999999999999999754 4445555555555 4666554
No 261
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.30 E-value=2.5e-06 Score=86.55 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=70.0
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccC----CCCCCCCeeEEEecC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRR----LPYPSQAFDLIHCSR 82 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~----lp~~~~sfDlI~s~~ 82 (402)
++.+|||+|||+|.++..++.. .++++|+++.++..+. +.+...+.. ..+...|+.. +++.+++||+|+++.
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~-~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dP 375 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERAR-ENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDP 375 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECc
Confidence 4579999999999999888865 7899999998887665 444444543 3455666432 335567899999875
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
... .....+..+.+ ++|++.++++..|
T Consensus 376 Pr~----g~~~~~~~l~~-~~~~~ivyvSCnp 402 (443)
T PRK13168 376 PRA----GAAEVMQALAK-LGPKRIVYVSCNP 402 (443)
T ss_pred CCc----ChHHHHHHHHh-cCCCeEEEEEeCh
Confidence 422 13355555555 6999999999743
No 262
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.29 E-value=1.5e-05 Score=69.92 Aligned_cols=119 Identities=18% Similarity=0.251 Sum_probs=78.1
Q ss_pred ccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCCC-CCChhhH---Hhc-Cc--ccccccC-CCCCCCCCCccc
Q 015704 249 HWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVI---YDR-GL--IGVMHDW-CEPFDTYPRTYD 320 (402)
Q Consensus 249 ~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~-~~~~~~~---~~r-g~--~~~~~~~-~~~~~~~~~sfD 320 (402)
.+.++. .++|+|||+|+.+..++..+ ....|.++|. +..++.+ .+| |+ +..+..+ .+.++..| +||
T Consensus 31 ~~~~g~--~l~DIGaGtGsi~iE~a~~~---p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~d 104 (187)
T COG2242 31 RPRPGD--RLWDIGAGTGSITIEWALAG---PSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPD 104 (187)
T ss_pred CCCCCC--EEEEeCCCccHHHHHHHHhC---CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCC
Confidence 444454 49999999999999998444 3345666652 3333322 222 33 3333333 33344444 899
Q ss_pred EEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEe-ChhhHHHHHHHHHhcCc-eEEEe
Q 015704 321 LLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD-SIDVMDELQEIGKAMGW-HVTLR 380 (402)
Q Consensus 321 ~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~-~~~~~~~~~~~~~~~~w-~~~~~ 380 (402)
.|+-..- -+++.+|......|||||.++..- ..+.....-+.++++.+ ++.-.
T Consensus 105 aiFIGGg-------~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~~v 159 (187)
T COG2242 105 AIFIGGG-------GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIVQV 159 (187)
T ss_pred EEEECCC-------CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEEEE
Confidence 9999853 246799999999999999999985 34556667777888888 54443
No 263
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.28 E-value=2.3e-06 Score=91.45 Aligned_cols=103 Identities=15% Similarity=0.129 Sum_probs=72.5
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC---cEEEeccccC-CCCCCCCeeEEEecC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRR-LPYPSQAFDLIHCSR 82 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~---~~~~~~d~~~-lp~~~~sfDlI~s~~ 82 (402)
++.+|||+|||+|.++..++.. .|+++|+++..+..+. +.+..++.. ..+...|+.+ +.-..++||+|+++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~-~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAE-RNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 4679999999999999888864 5999999998887666 344444443 3455666432 111146899999976
Q ss_pred cccccc----------cChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRINWT----------RDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~~----------~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
..+.-. .+...++..+.++|+|||.+++++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 543211 1235678888999999999999863
No 264
>PRK00811 spermidine synthase; Provisional
Probab=98.26 E-value=1.6e-06 Score=82.61 Aligned_cols=101 Identities=15% Similarity=0.150 Sum_probs=60.6
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc------Cc-----ccccccCCCCCCCCC-Cccc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR------GL-----IGVMHDWCEPFDTYP-RTYD 320 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r------g~-----~~~~~~~~~~~~~~~-~sfD 320 (402)
..++|||+|||.|+++..++++. .+.+|+.+| .+.+++.+.+. +. +..++.-...+...+ ++||
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~---~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP---SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC---CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 45679999999999999998862 122455555 34566555442 11 222222111111123 7999
Q ss_pred EEEEccccccccccC-CHHHHHHHhhhhccCCcEEEEE
Q 015704 321 LLHAAGLFSVESKRC-NMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 321 ~v~~~~~~~~~~~~~-~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
+|++...-.+..... --...+.++.|.|+|||.+++.
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999863222111100 0146788999999999999986
No 265
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.26 E-value=4e-06 Score=77.71 Aligned_cols=97 Identities=11% Similarity=0.116 Sum_probs=65.7
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC-CC-----CCCCCee
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LP-----YPSQAFD 76 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~-lp-----~~~~sfD 76 (402)
++++|||+|||+|..+..++.. .++++|+++.....+. +...+.+.. ..+..+|+.+ ++ .+.++||
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~-~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGL-EFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 5779999999999766555432 7999999987665555 333444543 2344555332 12 1246899
Q ss_pred EEEecCcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 77 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 77 lI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
+|+.... .+....++..+.+.|+|||.+++.
T Consensus 147 ~VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 147 FAFVDAD----KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred EEEECCC----HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 9996422 223467899999999999999886
No 266
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.26 E-value=3e-06 Score=78.85 Aligned_cols=93 Identities=19% Similarity=0.252 Sum_probs=66.1
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
+..+|+|||+|+|.++..++++ +++..|+-. .++.+++ .....+..+|.. -++|. +|+++...++|
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~------v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh 169 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPE------VIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLH 169 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HH------HHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGG
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeeccHh------hhhcccc-ccccccccccHH-hhhcc--ccceeeehhhh
Confidence 4568999999999999888765 556666522 2233333 233456667765 55664 99999999999
Q ss_pred ccccCh-HHHHHHHHHhcCCC--eEEEEEe
Q 015704 86 NWTRDD-GILLLEVNRMLRAG--GYFAWAA 112 (402)
Q Consensus 86 ~~~~d~-~~~l~e~~r~Lkpg--G~li~~~ 112 (402)
.|.++. ..+|+++++.|+|| |.+++..
T Consensus 170 ~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 170 DWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp GS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred hcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 998553 68999999999999 9999974
No 267
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.24 E-value=3.4e-06 Score=76.03 Aligned_cols=101 Identities=11% Similarity=0.019 Sum_probs=64.9
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccC-CCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRR-LPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~-lp~~~~sfDlI~s~~~~ 84 (402)
++.+|||+|||+|.++..++.+ .++++|.++.....+. +.++..+.. ..+...|... ++...++||+|+++..+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~-~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLI-KNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHH-HHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 4579999999999999754332 7899999886665444 333334443 3355555433 22234579999998663
Q ss_pred cccccChHHHHHHHHH--hcCCCeEEEEEeC
Q 015704 85 INWTRDDGILLLEVNR--MLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r--~LkpgG~li~~~~ 113 (402)
.. .-...++..+.. +|+|+|++++++.
T Consensus 132 ~~--g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 132 RK--GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred CC--ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 22 113455555554 4899999999953
No 268
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.24 E-value=1.1e-06 Score=78.99 Aligned_cols=103 Identities=23% Similarity=0.374 Sum_probs=59.4
Q ss_pred CCCeEEEECCccc----hhHHHHcc------C---CceEEeCCccchHHHHHH------------HHHHc------C--C
Q 015704 10 LLRVVMDAGCGVA----SFGAYLLP------R---NVITMSIAPKDVHENQIQ------------FALER------G--A 56 (402)
Q Consensus 10 ~~~~VLDiGcG~G----~~~~~L~~------~---~v~~vdi~~~~~~~a~~~------------~a~~~------~--~ 56 (402)
+.-+|+.+||++| +++..+.+ . .+.|+|+++..+..|... ...++ + .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4569999999999 44444444 1 678888887666554320 00000 0 0
Q ss_pred --------CcEEEeccccCCCCCCCCeeEEEecCcccccccCh-HHHHHHHHHhcCCCeEEEEEe
Q 015704 57 --------PAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 57 --------~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~~~d~-~~~l~e~~r~LkpgG~li~~~ 112 (402)
...+...+..+.+.+.+.||+|+|.++++++..+. .++++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 11244445444334457899999999988887553 689999999999999999984
No 269
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.22 E-value=3.2e-06 Score=77.42 Aligned_cols=94 Identities=9% Similarity=0.069 Sum_probs=66.0
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHh-----------------cCc-ccccccCCCCCCCCC-
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYD-----------------RGL-IGVMHDWCEPFDTYP- 316 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~-----------------rg~-~~~~~~~~~~~~~~~- 316 (402)
..||+.|||.|.=+.+|+++|++|..+++.+. .++.+++ +|. +..+ +.++-.++
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~----Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~---~gD~f~l~~ 117 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGVKVIGIELSEK----AVLSFFSQNTINYEVIHGNDYKLYKGDDIEIY---VADIFNLPK 117 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCCcEEEEecCHH----HHHHHHHHcCCCcceecccccceeccCceEEE---EccCcCCCc
Confidence 36999999999999999999995555444443 3332222 222 2222 12222221
Q ss_pred -----CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 317 -----RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 317 -----~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
..||+|+=...|.+++. ..-..+..-|.++|||||.+++-
T Consensus 118 ~~~~~~~fD~VyDra~~~Alpp-~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 118 IANNLPVFDIWYDRGAYIALPN-DLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred cccccCCcCeeeeehhHhcCCH-HHHHHHHHHHHHHhCCCcEEEEE
Confidence 47999999999999974 45679999999999999998775
No 270
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.22 E-value=4.2e-06 Score=72.49 Aligned_cols=115 Identities=22% Similarity=0.343 Sum_probs=77.4
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCCh----hhHHhcCc---ccccc-cCCCCCCCCCCcccEEEEccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTL----PVIYDRGL---IGVMH-DWCEPFDTYPRTYDLLHAAGL 327 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~----~~~~~rg~---~~~~~-~~~~~~~~~~~sfD~v~~~~~ 327 (402)
+|||+|||-|.+-..|++.|+. -.++++| ++..+ ++|..+|+ |.+.. +...+ -.++..||+|+=-..
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~---~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQ---SKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGT 145 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCC---CCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCc
Confidence 6999999999999999999863 2377777 65555 34555565 21111 22221 123489999997766
Q ss_pred cccc---cc--cCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCc
Q 015704 328 FSVE---SK--RCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGW 375 (402)
Q Consensus 328 ~~~~---~~--~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w 375 (402)
+-.+ ++ ...+..++--+.++|+|||.|+|+.=+-..+.+-+....-..
T Consensus 146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~f 198 (227)
T KOG1271|consen 146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFNF 198 (227)
T ss_pred eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCCe
Confidence 6442 11 112357888899999999999999887667777666555543
No 271
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.22 E-value=1.9e-06 Score=81.70 Aligned_cols=102 Identities=16% Similarity=0.184 Sum_probs=67.8
Q ss_pred CCeEEEECCccc----hhHHHHccC--------CceEEeCCccchHHHHHHH----H--------HHcCC----------
Q 015704 11 LRVVMDAGCGVA----SFGAYLLPR--------NVITMSIAPKDVHENQIQF----A--------LERGA---------- 56 (402)
Q Consensus 11 ~~~VLDiGcG~G----~~~~~L~~~--------~v~~vdi~~~~~~~a~~~~----a--------~~~~~---------- 56 (402)
.-+|+..||.|| +++..+.+. .|+|+|++...+..+.... . +++..
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999 344444331 5888999887776554310 0 00000
Q ss_pred ---------CcEEEeccccCCCCC-CCCeeEEEecCcccccccC-hHHHHHHHHHhcCCCeEEEEEe
Q 015704 57 ---------PAMVAAFATRRLPYP-SQAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 57 ---------~~~~~~~d~~~lp~~-~~sfDlI~s~~~~~~~~~d-~~~~l~e~~r~LkpgG~li~~~ 112 (402)
...+...+....+++ .+.||+|+|.++++|+..+ ..++++++++.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 012333444443333 5789999999998888644 4789999999999999998884
No 272
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.21 E-value=5.3e-06 Score=73.22 Aligned_cols=102 Identities=19% Similarity=0.107 Sum_probs=60.0
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcC----CCcEEEeccccC-C---CCCCCCee
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG----APAMVAAFATRR-L---PYPSQAFD 76 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~----~~~~~~~~d~~~-l---p~~~~sfD 76 (402)
.++.+|||+|||+|..+..++.. .|+..|..+ ..+.....++.++ ....+...+-.. . .....+||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S---HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch--hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 46789999999999666555543 788889877 3333334444332 112233322111 1 12346899
Q ss_pred EEEecCcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 77 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 77 lI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+|+++.+++ .....+.+++-+.++|+|+|.++++..
T Consensus 122 ~IlasDv~Y-~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 122 VILASDVLY-DEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEEecccc-hHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 999998844 454568899999999999999888853
No 273
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.21 E-value=3.3e-06 Score=85.19 Aligned_cols=113 Identities=17% Similarity=0.183 Sum_probs=67.4
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCC-CcccEEEEcc--
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP-RTYDLLHAAG-- 326 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~-~sfD~v~~~~-- 326 (402)
+|||+|||+|+.+.++++.-. -...|+++| ++.+++.+.++ |+ +..++.-...++.+. ++||.|++.-
T Consensus 240 ~VLD~cagpGgkt~~la~~~~--~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPC 317 (431)
T PRK14903 240 RVLDTCAAPGGKTTAIAELMK--DQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPC 317 (431)
T ss_pred EEEEeCCCccHHHHHHHHHcC--CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCC
Confidence 599999999999999887510 112577777 45666554433 44 233332222333343 7899999731
Q ss_pred -ccccccccCC----------------HHHHHHHhhhhccCCcEEEEEe----ChhhHHHHHHHHH
Q 015704 327 -LFSVESKRCN----------------MSTIMLEMDRMLRPGGHVYIRD----SIDVMDELQEIGK 371 (402)
Q Consensus 327 -~~~~~~~~~~----------------~~~~l~e~~RvLrpgG~~~~~~----~~~~~~~~~~~~~ 371 (402)
-+..+....+ -..+|.+..+.|||||+++.+. +.+-.+.++.+++
T Consensus 318 sg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~ 383 (431)
T PRK14903 318 TSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY 383 (431)
T ss_pred CCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH
Confidence 1111111000 1367999999999999999984 2233445555554
No 274
>PRK01581 speE spermidine synthase; Validated
Probab=98.21 E-value=8.7e-06 Score=79.09 Aligned_cols=103 Identities=13% Similarity=0.126 Sum_probs=63.3
Q ss_pred CCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc--------C-c----ccccccCCCC-CCCCCC
Q 015704 253 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR--------G-L----IGVMHDWCEP-FDTYPR 317 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r--------g-~----~~~~~~~~~~-~~~~~~ 317 (402)
...++||++|||.|+.++.+.+.+ .+..|+.+| .+.+++.|.+. + + +..+++-... +..-++
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~---~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~ 225 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYE---TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSS 225 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcC---CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCC
Confidence 345689999999999998888764 233556665 46677777751 1 1 2122211111 111236
Q ss_pred cccEEEEcccccccc---ccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 318 TYDLLHAAGLFSVES---KRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 318 sfD~v~~~~~~~~~~---~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
+||+|++.-. .... ..---...+..+.|.|+|||.+++...
T Consensus 226 ~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 226 LYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred CccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 8999999821 1000 000014688999999999999988753
No 275
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.19 E-value=5.7e-06 Score=80.19 Aligned_cols=100 Identities=18% Similarity=0.174 Sum_probs=69.0
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCC-CCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPY-PSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~-~~~sfDlI~s~~~~~ 85 (402)
++.+|||+|||+|.++..++.. .++++|+++.++..+. +.++..+.. ..+...|+..+.. ..++||+|+++...-
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~-~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK-QSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 4579999999999999988876 7999999998887665 445555554 4466667655432 235799999875411
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
.....+.++...++|++.+++++.|
T Consensus 252 ----G~~~~~~~~l~~~~~~~ivyvsc~p 276 (315)
T PRK03522 252 ----GIGKELCDYLSQMAPRFILYSSCNA 276 (315)
T ss_pred ----CccHHHHHHHHHcCCCeEEEEECCc
Confidence 1222333444447889999998643
No 276
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.18 E-value=4.8e-06 Score=85.65 Aligned_cols=103 Identities=15% Similarity=0.144 Sum_probs=76.2
Q ss_pred CCCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCC--CCCCCCeeEEEe
Q 015704 8 IRLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRL--PYPSQAFDLIHC 80 (402)
Q Consensus 8 ~~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~~l--p~~~~sfDlI~s 80 (402)
+.....+||||||.|.++..++.. .++|+|+...-+..+. +.+.+.++.+. +...++..+ -++++++|.|+.
T Consensus 345 ~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~-~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 345 NEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVL-KLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHH-HHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence 445678999999999998888765 7999999986665554 44455666555 344444322 267889999997
Q ss_pred cCcccccccCh--------HHHHHHHHHhcCCCeEEEEEe
Q 015704 81 SRCRINWTRDD--------GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 81 ~~~~~~~~~d~--------~~~l~e~~r~LkpgG~li~~~ 112 (402)
++. -.|+... ..++..++++|+|||.+.+.|
T Consensus 424 ~FP-DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 424 LFP-DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred ECC-CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 755 6665432 588999999999999999997
No 277
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.18 E-value=4.6e-06 Score=84.41 Aligned_cols=119 Identities=15% Similarity=0.226 Sum_probs=71.0
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCC---C-CCcccEEEEc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDT---Y-PRTYDLLHAA 325 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~---~-~~sfD~v~~~ 325 (402)
.|||+|||+|+.+.+|++... ....|+++| +..+++.+.++ |+ +..++.-...++. + +++||.|++.
T Consensus 255 ~VLDl~ag~G~kt~~la~~~~--~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~D 332 (434)
T PRK14901 255 VILDACAAPGGKTTHIAELMG--DQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLD 332 (434)
T ss_pred EEEEeCCCCchhHHHHHHHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEe
Confidence 599999999999999987621 112566666 45555444332 44 3333322222221 2 3799999963
Q ss_pred ------ccccccccc------CC-------HHHHHHHhhhhccCCcEEEEEe----ChhhHHHHHHHHHhc-CceE
Q 015704 326 ------GLFSVESKR------CN-------MSTIMLEMDRMLRPGGHVYIRD----SIDVMDELQEIGKAM-GWHV 377 (402)
Q Consensus 326 ------~~~~~~~~~------~~-------~~~~l~e~~RvLrpgG~~~~~~----~~~~~~~~~~~~~~~-~w~~ 377 (402)
+++.+-++. .+ -..+|.++.|+|||||+++.++ +.+-...++.++++- .|++
T Consensus 333 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~ 408 (434)
T PRK14901 333 APCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKL 408 (434)
T ss_pred CCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEe
Confidence 344332210 01 2478999999999999999874 223355666666553 3553
No 278
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.18 E-value=1.6e-05 Score=73.13 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=73.2
Q ss_pred CCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcE--EEe----cc-ccCCCCCCCCeeEEE
Q 015704 11 LRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM--VAA----FA-TRRLPYPSQAFDLIH 79 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~--~~~----~d-~~~lp~~~~sfDlI~ 79 (402)
+..|||+|||+|.++..++.. .++++|.+...+.-+. +.++...+... +.. .+ ....+...+.+|+++
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~-eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK-ENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHH-HHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 347999999999888777654 7899999987765554 44444443332 121 12 233345578999999
Q ss_pred ecCcccccccC-------------------------hHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHH
Q 015704 80 CSRCRINWTRD-------------------------DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWK 127 (402)
Q Consensus 80 s~~~~~~~~~d-------------------------~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~ 127 (402)
||.....-.+. ...++.-+.|.|+|||++.+... .......+.+.|.
T Consensus 228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~-~~~~~~~lv~~~m 299 (328)
T KOG2904|consen 228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV-ERKEHSYLVRIWM 299 (328)
T ss_pred cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec-ccccCcHHHHHHH
Confidence 98654432110 11345667899999999999963 2233455566664
No 279
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.17 E-value=2.5e-06 Score=86.64 Aligned_cols=113 Identities=18% Similarity=0.220 Sum_probs=65.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc--ccccccCCCCCCCCC-CcccEEEEc--
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMHDWCEPFDTYP-RTYDLLHAA-- 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~~~~~~~~~~~-~sfD~v~~~-- 325 (402)
..|||+|||+|+.+.++++... ....|+++| ++.+++.+.+ .|+ +..+..-...++ + .+||.|++.
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~--~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~--~~~~fD~Vl~D~P 327 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQ--NRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS--PEEQPDAILLDAP 327 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhC--CCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc--cCCCCCEEEEcCC
Confidence 3599999999999988876411 112566666 4555544433 354 222322222221 3 689999952
Q ss_pred ----ccccccc------ccCC-------HHHHHHHhhhhccCCcEEEEEeC----hhhHHHHHHHHHh
Q 015704 326 ----GLFSVES------KRCN-------MSTIMLEMDRMLRPGGHVYIRDS----IDVMDELQEIGKA 372 (402)
Q Consensus 326 ----~~~~~~~------~~~~-------~~~~l~e~~RvLrpgG~~~~~~~----~~~~~~~~~~~~~ 372 (402)
.++.+-+ ...+ -..+|.++.++|||||+++++.- .+-...++.++++
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 2222110 0001 12689999999999999999962 2224445555554
No 280
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.17 E-value=3.3e-06 Score=85.28 Aligned_cols=114 Identities=18% Similarity=0.260 Sum_probs=67.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-ccccccCCCCCCC-CC-CcccEEEE---
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEPFDT-YP-RTYDLLHA--- 324 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~~~~~~~~~-~~-~sfD~v~~--- 324 (402)
..|||+|||+|+.+..+++++.. ..|+++| ++.+++.+.++ |+ +..+..-...++. ++ .+||.|++
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~~---~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAPQ---AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcCC---CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 35999999999999999987421 3566666 45555544333 33 2222222222222 34 68999994
Q ss_pred -cc--cccccc------ccCC-------HHHHHHHhhhhccCCcEEEEEeC----hhhHHHHHHHHHh
Q 015704 325 -AG--LFSVES------KRCN-------MSTIMLEMDRMLRPGGHVYIRDS----IDVMDELQEIGKA 372 (402)
Q Consensus 325 -~~--~~~~~~------~~~~-------~~~~l~e~~RvLrpgG~~~~~~~----~~~~~~~~~~~~~ 372 (402)
+. ++.+-+ ...+ ...+|.+..++|||||+++++.- .+-.+.++.++++
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence 32 222111 0001 13689999999999999998852 2223445555543
No 281
>PLN02672 methionine S-methyltransferase
Probab=98.16 E-value=1.3e-05 Score=88.13 Aligned_cols=100 Identities=14% Similarity=0.112 Sum_probs=68.2
Q ss_pred CCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCC-----------------CcEEEeccccCCC
Q 015704 11 LRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA-----------------PAMVAAFATRRLP 69 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~-----------------~~~~~~~d~~~lp 69 (402)
+.+|||+|||+|.++..++.. .++++|+++.++..+..+. +.++. ...+...|....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na-~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~- 196 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINL-YLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY- 196 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHcCcccccccccccccccccccEEEEECchhhh-
Confidence 458999999999998888753 6999999998887666433 33211 134555564332
Q ss_pred CCC--CCeeEEEecCcccccc---------------------------------cCh----HHHHHHHHHhcCCCeEEEE
Q 015704 70 YPS--QAFDLIHCSRCRINWT---------------------------------RDD----GILLLEVNRMLRAGGYFAW 110 (402)
Q Consensus 70 ~~~--~sfDlI~s~~~~~~~~---------------------------------~d~----~~~l~e~~r~LkpgG~li~ 110 (402)
+.+ ..||+|+||...+.-. .|. .+++.+..++|+|||.+++
T Consensus 197 ~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 197 CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 222 3699999986533210 110 4677888899999999999
Q ss_pred Ee
Q 015704 111 AA 112 (402)
Q Consensus 111 ~~ 112 (402)
..
T Consensus 277 Ei 278 (1082)
T PLN02672 277 NM 278 (1082)
T ss_pred EE
Confidence 85
No 282
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.16 E-value=3.2e-06 Score=75.91 Aligned_cols=128 Identities=15% Similarity=0.240 Sum_probs=69.5
Q ss_pred hHHhhHHHHHHHHHHH-Hhcc-cCCCCcceEEeccccchH----HHHHHhh--cCCCceEEEeccCC-CCCChhhHHhcC
Q 015704 230 FKAESKYWNEIIESYV-RALH-WKKMKLRNVLDMRAGFGG----FAAALIE--QKFDCWVMNVVPVS-GFNTLPVIYDRG 300 (402)
Q Consensus 230 ~~~~~~~w~~~~~~y~-~~~~-~~~~~~~~vLD~g~g~G~----~~~~l~~--~~~~~~~~~v~~~~-~~~~~~~~~~rg 300 (402)
|-++...|....+... ..+. ...++.-+|+.+||++|. .|..|.+ .+..-+.+.|.++| ++..++.|.. |
T Consensus 5 FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~-G 83 (196)
T PF01739_consen 5 FFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA-G 83 (196)
T ss_dssp TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH-T
T ss_pred ccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh-C
Confidence 4445555555555444 2222 122344459999999994 5555555 22122567888887 5566655432 3
Q ss_pred c------------------------------------ccccccCCCCCCCCCCcccEEEEccccccccccCCHHHHHHHh
Q 015704 301 L------------------------------------IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEM 344 (402)
Q Consensus 301 ~------------------------------------~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~~~~~~~~~~l~e~ 344 (402)
. .-..|+..+ ..+.+..||+|+|.|||-|.... .-..++.-+
T Consensus 84 ~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~~-~~~~vl~~l 161 (196)
T PF01739_consen 84 IYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDPE-TQQRVLRRL 161 (196)
T ss_dssp EEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS-HH-HHHHHHHHH
T ss_pred CCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeCHH-HHHHHHHHH
Confidence 3 011244444 12223799999999999999743 457999999
Q ss_pred hhhccCCcEEEEEeCh
Q 015704 345 DRMLRPGGHVYIRDSI 360 (402)
Q Consensus 345 ~RvLrpgG~~~~~~~~ 360 (402)
.+.|+|||++++-...
T Consensus 162 ~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 162 HRSLKPGGYLFLGHSE 177 (196)
T ss_dssp GGGEEEEEEEEE-TT-
T ss_pred HHHcCCCCEEEEecCc
Confidence 9999999999998654
No 283
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.13 E-value=6e-06 Score=77.98 Aligned_cols=100 Identities=19% Similarity=0.221 Sum_probs=59.7
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCCCcccEEEEc----
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYPRTYDLLHAA---- 325 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~~sfD~v~~~---- 325 (402)
.|||+|||+|+.+..|++.-. ....|+++| ++.+++.+.++ |+ +..++.-...++....+||.|++.
T Consensus 74 ~VLDl~ag~G~kt~~la~~~~--~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcs 151 (264)
T TIGR00446 74 RVLDMAAAPGGKTTQISALMK--NEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCS 151 (264)
T ss_pred EEEEECCCchHHHHHHHHHcC--CCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCC
Confidence 499999999999999887521 011466666 44555443332 43 333332222222222579999863
Q ss_pred --ccccccccc------CC-------HHHHHHHhhhhccCCcEEEEEe
Q 015704 326 --GLFSVESKR------CN-------MSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 326 --~~~~~~~~~------~~-------~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
.++.+-++. .+ -..+|.+..++|||||+++.+.
T Consensus 152 g~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 152 GEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred CCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 222221110 01 1368999999999999999984
No 284
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.12 E-value=7.7e-06 Score=79.11 Aligned_cols=101 Identities=17% Similarity=0.012 Sum_probs=59.7
Q ss_pred HhcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc--ccccccCCCCCCCCCCc
Q 015704 246 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMHDWCEPFDTYPRT 318 (402)
Q Consensus 246 ~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~~~~~~~~~~~~s 318 (402)
+.+....+ .+|||+|||+|.+++.+++... ....|+.+| ++.+++.+.+ .|+ +..++.-.....+...+
T Consensus 74 ~~L~i~~g--~~VLDIG~GtG~~a~~LA~~~~--~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 74 EWVGLDKG--MRVLEIGGGTGYNAAVMSRVVG--EKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HhcCCCCC--CEEEEEeCCccHHHHHHHHhcC--CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence 33444433 3599999999999999987531 001355555 4556655544 243 22333221111111268
Q ss_pred ccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 319 YDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 319 fD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
||+|++...+.+ +...+.+.|||||.+++-..
T Consensus 150 fD~Ii~~~g~~~---------ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 150 YDVIFVTVGVDE---------VPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred ccEEEECCchHH---------hHHHHHHhcCCCCEEEEEeC
Confidence 999999743332 33456789999999988643
No 285
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.12 E-value=8.7e-06 Score=82.21 Aligned_cols=100 Identities=19% Similarity=0.257 Sum_probs=61.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Ccc-cc--cccCCCCCCCC-C-CcccEEEE-
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GLI-GV--MHDWCEPFDTY-P-RTYDLLHA- 324 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~~-~~--~~~~~~~~~~~-~-~sfD~v~~- 324 (402)
.+|||+|||+|+.+.++++... ...|+++| ++.+++.+.++ |+- .. ........+.+ + .+||.|++
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~---~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAP---QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcC---CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 4699999999999999987621 12566666 45555444332 441 11 11111111221 4 68999995
Q ss_pred -----cccccccccc---CC----------HHHHHHHhhhhccCCcEEEEEe
Q 015704 325 -----AGLFSVESKR---CN----------MSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 325 -----~~~~~~~~~~---~~----------~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
.+++.+-++. -. -..+|.+..|+|||||+++++.
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 2455443320 01 1479999999999999999983
No 286
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.08 E-value=8.2e-06 Score=77.92 Aligned_cols=100 Identities=15% Similarity=0.231 Sum_probs=68.0
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcE--EEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAM--VAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~--~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
+++.|||+|||+|-++...++. .|.++|.+... .-..+..+.++...+ +..+.++++.+|.++.|+|+|-..-
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia--~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA--DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH--HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 5689999999999887766654 88999988643 333466666776654 4445566666667899999975432
Q ss_pred cccc-cC-hHHHHHHHHHhcCCCeEEEEE
Q 015704 85 INWT-RD-DGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 85 ~~~~-~d-~~~~l~e~~r~LkpgG~li~~ 111 (402)
.... +. ....+-.=.+.|+|||.++=+
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence 2211 11 345566667899999987543
No 287
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.08 E-value=3.4e-06 Score=82.49 Aligned_cols=92 Identities=22% Similarity=0.311 Sum_probs=63.5
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChh----hHHhcCc-----ccccccCCCCCCCCC-CcccEEEEc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLP----VIYDRGL-----IGVMHDWCEPFDTYP-RTYDLLHAA 325 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~----~~~~rg~-----~~~~~~~~~~~~~~~-~sfD~v~~~ 325 (402)
.++|+|||+|+...+++.-+. .++...+ +...+. .+...++ + .+++ +- ..+|+ ++||.|.+.
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~----~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~-~~~~-~~-~~~fedn~fd~v~~l 185 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKK----AGVVGLDNNAYEAFRANELAKKAYLDNKCNF-VVAD-FG-KMPFEDNTFDGVRFL 185 (364)
T ss_pred cccccCcCcCchhHHHHHhcc----CCccCCCcCHHHHHHHHHHHHHHHhhhhcce-ehhh-hh-cCCCCccccCcEEEE
Confidence 589999999999999887632 2444443 221221 1111122 2 2221 11 13577 899999999
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
.+..|.++ ...++.|+.|+++|||+++..+
T Consensus 186 d~~~~~~~---~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 186 EVVCHAPD---LEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred eecccCCc---HHHHHHHHhcccCCCceEEeHH
Confidence 99999885 6899999999999999999875
No 288
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.08 E-value=2.2e-05 Score=75.75 Aligned_cols=78 Identities=14% Similarity=0.171 Sum_probs=50.9
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHc-CCCcE--EE-eccccCC----CCCCCCeeE
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER-GAPAM--VA-AFATRRL----PYPSQAFDL 77 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~-~~~~~--~~-~~d~~~l----p~~~~sfDl 77 (402)
...++||||||+|.+...++.+ .++++|+++..+..++.... .+ ++... +. +.+...+ ..+.+.||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~-~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIIS-ANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHH-hccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 4579999999999777666543 78999999988877764443 34 34322 21 2222221 124578999
Q ss_pred EEecCcccccc
Q 015704 78 IHCSRCRINWT 88 (402)
Q Consensus 78 I~s~~~~~~~~ 88 (402)
|+||..++.-.
T Consensus 193 ivcNPPf~~s~ 203 (321)
T PRK11727 193 TLCNPPFHASA 203 (321)
T ss_pred EEeCCCCcCcc
Confidence 99998755533
No 289
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.08 E-value=7.1e-06 Score=73.38 Aligned_cols=134 Identities=19% Similarity=0.308 Sum_probs=84.4
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCCC-CCCh----hhHHhcCcc----cccccCCCC-------CCCCCCccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTL----PVIYDRGLI----GVMHDWCEP-------FDTYPRTYD 320 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~-~~~~----~~~~~rg~~----~~~~~~~~~-------~~~~~~sfD 320 (402)
.||.||||+|..+++++..= ..+.--|.|- .+.+ ..+.+.|+- ...-|.+.+ .+.++++||
T Consensus 28 ~vLEiaSGtGqHa~~FA~~l---P~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D 104 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQAL---PHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFD 104 (204)
T ss_pred eEEEEcCCccHHHHHHHHHC---CCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcc
Confidence 69999999999999999873 2235556662 2222 233444551 111111111 111347999
Q ss_pred EEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC-----------h----------------hhHHHHHHHHHhc
Q 015704 321 LLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-----------I----------------DVMDELQEIGKAM 373 (402)
Q Consensus 321 ~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~-----------~----------------~~~~~~~~~~~~~ 373 (402)
.|+|.|+++-.+. ...+.++.+..|+|+|||.+++=-+ + --++.+..++.+-
T Consensus 105 ~i~~~N~lHI~p~-~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~ 183 (204)
T PF06080_consen 105 AIFCINMLHISPW-SAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAH 183 (204)
T ss_pred eeeehhHHHhcCH-HHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHC
Confidence 9999999877764 4468999999999999999998721 1 1145677777776
Q ss_pred CceEEEeecCCCCCCceEEEEEEe
Q 015704 374 GWHVTLRETAEGPHASYRILTADK 397 (402)
Q Consensus 374 ~w~~~~~~~~~~~~~~~~~l~~~k 397 (402)
.++.....+- | ..-++||.+|
T Consensus 184 GL~l~~~~~M--P-ANN~~Lvfrk 204 (204)
T PF06080_consen 184 GLELEEDIDM--P-ANNLLLVFRK 204 (204)
T ss_pred CCccCccccc--C-CCCeEEEEeC
Confidence 6665433221 1 2356676665
No 290
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.06 E-value=1.1e-05 Score=81.87 Aligned_cols=120 Identities=17% Similarity=0.213 Sum_probs=69.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc--ccccccCCCCC-CCCCCcccEEEEc--
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMHDWCEPF-DTYPRTYDLLHAA-- 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~~~~~~~-~~~~~sfD~v~~~-- 325 (402)
.+|||+|||+|+++.++++.-. ....|+++| ++++++.+.+ .|+ +..++.-...+ ..++++||+|++.
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~--~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~P 329 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLK--NTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAP 329 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCC
Confidence 4599999999999999987510 112566666 4555544433 244 33333222222 2345799999974
Q ss_pred ----ccccccccc------CCH-------HHHHHHhhhhccCCcEEEEEeC----hhhHHHHHHHHHhc-CceE
Q 015704 326 ----GLFSVESKR------CNM-------STIMLEMDRMLRPGGHVYIRDS----IDVMDELQEIGKAM-GWHV 377 (402)
Q Consensus 326 ----~~~~~~~~~------~~~-------~~~l~e~~RvLrpgG~~~~~~~----~~~~~~~~~~~~~~-~w~~ 377 (402)
+++.|-++. .++ ..+|.+..|+|||||.++.+.- .+-...++.++++- .|+.
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~ 403 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFEL 403 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEE
Confidence 222221100 011 3589999999999999997631 12234555555553 2443
No 291
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.04 E-value=9.6e-06 Score=74.37 Aligned_cols=103 Identities=18% Similarity=0.276 Sum_probs=68.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCC--CCChhhHHhcCc--ccccccCCCC-CCCC-CC-cccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG--FNTLPVIYDRGL--IGVMHDWCEP-FDTY-PR-TYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~--~~~~~~~~~rg~--~~~~~~~~~~-~~~~-~~-sfD~v~~~~~~ 328 (402)
..+|+||||.|.|...+|+++.++-.+.|..... ...++.+.+.|+ +..+..-+.. +..+ |. |.|-|+-. |
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~--F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN--F 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE--C
Confidence 3599999999999999999987654445544432 455567777777 4444322222 2223 44 99988875 2
Q ss_pred c-------cccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 329 S-------VESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 329 ~-------~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
. |-..|=--...|.++.|+|||||.+.+....
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 2 2121211248999999999999999997554
No 292
>PHA03411 putative methyltransferase; Provisional
Probab=98.02 E-value=8.2e-06 Score=76.38 Aligned_cols=96 Identities=13% Similarity=0.144 Sum_probs=64.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-ccccccCCCCCCCCC--CcccEEEEccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYP--RTYDLLHAAGLFSVE 331 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~~~~~~~~~~~~~~--~sfD~v~~~~~~~~~ 331 (402)
.+|||+|||+|.++..++.+.. ..+|+.+| ++.+++.+.++-- +..++. ++..++ ++||+|++.--|.|+
T Consensus 66 grVLDLGcGsGilsl~la~r~~---~~~V~gVDisp~al~~Ar~n~~~v~~v~~---D~~e~~~~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCK---PEKIVCVELNPEFARIGKRLLPEAEWITS---DVFEFESNEKFDVVISNPPFGKI 139 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHhCcCCEEEEC---chhhhcccCCCcEEEEcCCcccc
Confidence 3699999999999998877621 12677777 5678877766421 222222 223333 689999998878775
Q ss_pred ccc--CC---------------HHHHHHHhhhhccCCcEEEEE
Q 015704 332 SKR--CN---------------MSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 332 ~~~--~~---------------~~~~l~e~~RvLrpgG~~~~~ 357 (402)
... .+ +...+....++|+|+|.+++-
T Consensus 140 ~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 140 NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 321 11 356778888999999988765
No 293
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.00 E-value=4.3e-05 Score=70.97 Aligned_cols=97 Identities=20% Similarity=0.237 Sum_probs=66.1
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC-c-EEEeccccCCCCC---CCCeeEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-A-MVAAFATRRLPYP---SQAFDLI 78 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~-~-~~~~~d~~~lp~~---~~sfDlI 78 (402)
.++.+|||.|.|+|.++..|+.. .|...|+.......+..++. ..++. + .+...|+..-.|+ +..+|.|
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~-~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav 117 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFE-RHGLDDNVTVHHRDVCEEGFDEELESDFDAV 117 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH-HTTCCTTEEEEES-GGCG--STT-TTSEEEE
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHH-HcCCCCCceeEecceecccccccccCcccEE
Confidence 47889999999999999888753 68888888766655554433 44553 3 3556676443342 3679999
Q ss_pred EecCcccccccChHHHHHHHHHhc-CCCeEEEEEe
Q 015704 79 HCSRCRINWTRDDGILLLEVNRML-RAGGYFAWAA 112 (402)
Q Consensus 79 ~s~~~~~~~~~d~~~~l~e~~r~L-kpgG~li~~~ 112 (402)
+.- ++ +|..++..+.+.| ||||.+++-.
T Consensus 118 fLD-----lp-~Pw~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 118 FLD-----LP-DPWEAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp EEE-----SS-SGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred EEe-----CC-CHHHHHHHHHHHHhcCCceEEEEC
Confidence 843 23 7788999999999 8999998875
No 294
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.99 E-value=7.9e-06 Score=75.10 Aligned_cols=87 Identities=17% Similarity=0.222 Sum_probs=56.1
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcE-EEecccc-----CCCCCCCCeeEEEe
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATR-----RLPYPSQAFDLIHC 80 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~-----~lp~~~~sfDlI~s 80 (402)
++.+|||+|||+|.++..+++. .++++|+++.++.....+ ..... +...++. ..+..-..+|++++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~-----~~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsfi 149 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQ-----DERVKVLERTNIRYVTPADIFPDFATFDVSFI 149 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhc-----CCCeeEeecCCcccCCHhHcCCCceeeeEEEe
Confidence 5678999999999999999876 699999998766442211 11111 1111222 22222246887776
Q ss_pred cCcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 81 SRCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
+.. ..+..+.+.|+| |.+++-
T Consensus 150 S~~---------~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 150 SLI---------SILPELDLLLNP-NDLTLL 170 (228)
T ss_pred ehH---------hHHHHHHHHhCc-CeEEEE
Confidence 532 348889999999 877765
No 295
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.99 E-value=4.8e-05 Score=72.09 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=60.1
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc-----Cc-----cccccc-CCCCCCCCCCcccEE
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR-----GL-----IGVMHD-WCEPFDTYPRTYDLL 322 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r-----g~-----~~~~~~-~~~~~~~~~~sfD~v 322 (402)
-++||++|||.|+++..+++.+ .+.+++.+| ++++++.+.+. +. +..++. ..+-+...+++||+|
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~---~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHK---SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCC---CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 4479999999999999998774 122445544 34455554442 10 111111 111111124799999
Q ss_pred EEccccccccccCC--HHHHHHHhhhhccCCcEEEEEe
Q 015704 323 HAAGLFSVESKRCN--MSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 323 ~~~~~~~~~~~~~~--~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
++........ ... -...+..+.|+|+|||.+++..
T Consensus 150 i~D~~~~~~~-~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 150 IVDSTDPVGP-AETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EEeCCCCCCc-ccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 9875422211 111 2578899999999999999863
No 296
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.99 E-value=2.1e-05 Score=79.64 Aligned_cols=99 Identities=22% Similarity=0.243 Sum_probs=67.9
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccC----CCCCCCCeeEEEecC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR----LPYPSQAFDLIHCSR 82 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~----lp~~~~sfDlI~s~~ 82 (402)
++.+|||+|||+|.++..+++. .++++|+++.++..+. +.+...+..+ .+...|... +++.+++||+|+...
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~-~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQ-QNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHH-HHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 4579999999999999988865 7999999998876665 4444445443 455666543 223456799999764
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.... -...+++.+.+ ++|++.++++..
T Consensus 371 Pr~G---~~~~~l~~l~~-l~~~~ivyvsc~ 397 (431)
T TIGR00479 371 PRKG---CAAEVLRTIIE-LKPERIVYVSCN 397 (431)
T ss_pred CCCC---CCHHHHHHHHh-cCCCEEEEEcCC
Confidence 4211 12556666554 899998888853
No 297
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.98 E-value=2.2e-05 Score=71.33 Aligned_cols=98 Identities=15% Similarity=0.146 Sum_probs=70.1
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcE--EEe-ccc-cCCC-CCCCCeeEEE
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAM--VAA-FAT-RRLP-YPSQAFDLIH 79 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~--~~~-~d~-~~lp-~~~~sfDlI~ 79 (402)
++++|||||++.|.-+..++.. +++++|+++.....++..++ +.+.... ... +|. +.+. ...++||+|+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~-~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLA-EAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHH-HcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 6789999999999888887754 58999999877766664443 4455442 223 231 2222 3468999999
Q ss_pred ecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 80 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 80 s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
. -+...+.+.++..+.++|+|||.+++-.
T Consensus 138 I----DadK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 138 I----DADKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred E----eCChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 4 3334456899999999999999999973
No 298
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=0.0001 Score=64.00 Aligned_cols=111 Identities=14% Similarity=0.182 Sum_probs=72.6
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
.+.-+||||||+|..+..|++. .+.++|+++..... ..+.|+.++......+.|... ....++.|+++.|..+
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~-Tl~TA~~n~~~~~~V~tdl~~-~l~~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEA-TLETARCNRVHIDVVRTDLLS-GLRNESVDVLVFNPPY 120 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHH-HHHHHHhcCCccceeehhHHh-hhccCCccEEEECCCc
Confidence 4667999999999888888765 37789999976643 336666555544444444221 1234899999987654
Q ss_pred cccccC--------------------hHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHH
Q 015704 85 INWTRD--------------------DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQE 123 (402)
Q Consensus 85 ~~~~~d--------------------~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~ 123 (402)
..-.++ ..+++.++-.+|.|.|.+++.+. ..+..+|+-
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~-~~N~p~ei~ 178 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL-RANKPKEIL 178 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh-hhcCHHHHH
Confidence 432211 13567778889999999999863 333344443
No 299
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.95 E-value=3.5e-05 Score=71.40 Aligned_cols=96 Identities=13% Similarity=0.155 Sum_probs=56.9
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc---ccccccCC-CCCCC----CC-Ccc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL---IGVMHDWC-EPFDT----YP-RTY 319 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~---~~~~~~~~-~~~~~----~~-~sf 319 (402)
+-++|||+|||+|.-+-.|+..-. ....|+.+| ++.+++.|.+ .|+ +..++.-. +.++. .+ .+|
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~--~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALP--EDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 345799999999986666654310 112455555 3344443332 344 33333211 11111 12 589
Q ss_pred cEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 320 DLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 320 D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
|+|+... ++.....++.++.|.|||||.+++.
T Consensus 146 D~VfiDa------~k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 146 DFAFVDA------DKPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CEEEECC------CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 9999862 2234568899999999999999975
No 300
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.93 E-value=3e-05 Score=74.49 Aligned_cols=104 Identities=19% Similarity=0.213 Sum_probs=71.4
Q ss_pred CCCCeEEEECCccchhHHHHc--cCCceEEeCCccchHHHHHHHHHHcCCCcE--EEeccccCCCCCCCCeeEEEecCcc
Q 015704 9 RLLRVVMDAGCGVASFGAYLL--PRNVITMSIAPKDVHENQIQFALERGAPAM--VAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~--~~~v~~vdi~~~~~~~a~~~~a~~~~~~~~--~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
+++..|||-=||||.+..... ...++|.|++..++..+..+.. ..++... ....|+..+|+++++||.|++-...
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~-~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPY 274 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLE-YYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPY 274 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhh-hhCcCceeEEEecccccCCCCCCccceEEecCCC
Confidence 466799999999998865443 3377888887776655543332 2233322 3334899999998899999974321
Q ss_pred ccc-----c--cC-hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 85 INW-----T--RD-DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~-----~--~d-~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
--- . ++ ...+|..+.++|++||+++|.++
T Consensus 275 Grst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 275 GRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 110 0 11 25789999999999999999964
No 301
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.93 E-value=1.8e-05 Score=72.71 Aligned_cols=109 Identities=18% Similarity=0.249 Sum_probs=67.4
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc------ccccc--cCCCCCCCCC-CcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL------IGVMH--DWCEPFDTYP-RTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~------~~~~~--~~~~~~~~~~-~sfD~v~~~ 325 (402)
..|||+|||+|+|+..|+++|+ -.|+++| +++|+........ ..++. +| +.+. .+ ..||++++|
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga----~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~-~~~~-~d~~~~DvsfiS 150 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGA----KEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTP-ADIF-PDFATFDVSFIS 150 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCC----CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCH-hHcC-CCceeeeEEEee
Confidence 3599999999999999999975 2466666 3445543222211 11221 22 1222 13 489999888
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEE-------------------eC---hhhHHHHHHHHHhcCceEEEeec
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR-------------------DS---IDVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~-------------------~~---~~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
. ..+|..|.+.|+| |.+++- |+ ..+++.+...+.+..|++.....
T Consensus 151 --------~---~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T TIGR00478 151 --------L---ISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKIIF 217 (228)
T ss_pred --------h---HhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeEEE
Confidence 2 3467888888888 777655 21 13355666667778888765544
No 302
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.92 E-value=6.5e-06 Score=73.77 Aligned_cols=98 Identities=12% Similarity=0.210 Sum_probs=72.2
Q ss_pred CCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc---CcccccccCCCCCCCCC-CcccEEEEccc
Q 015704 253 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR---GLIGVMHDWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r---g~~~~~~~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
..+..++|+||+.|....+|...|. -.++-.| +..|++-+... ++...+....|.+.+|. +|||+|+++..
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~v----ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSls 146 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGV----EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLS 146 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcch----hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhh
Confidence 3456799999999999999999863 2344444 45566555443 55444444457778887 89999999965
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
++-.. +++.-+....-.|||+|.||-+
T Consensus 147 lHW~N---dLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 147 LHWTN---DLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhc---cCchHHHHHHHhcCCCccchhH
Confidence 54433 4578999999999999999987
No 303
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=5.1e-05 Score=66.51 Aligned_cols=89 Identities=16% Similarity=0.112 Sum_probs=59.8
Q ss_pred CCCeEEEECCccchhHHHHc--c-CCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLL--P-RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~--~-~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
.+++|+|+|||||.++...+ . ..|+++|+++..+..+. +.+.+......+...|+.+.. ..||.++.|..+--
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r-~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIAR-ANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHH-HHHHhhCCceEEEEcchhhcC---CccceEEECCCCcc
Confidence 56789999999997764433 3 48999999997775544 555554445667777777654 67899998876555
Q ss_pred cccCh-HHHHHHHHHhc
Q 015704 87 WTRDD-GILLLEVNRML 102 (402)
Q Consensus 87 ~~~d~-~~~l~e~~r~L 102 (402)
+.... ..++....+.-
T Consensus 121 ~~rhaDr~Fl~~Ale~s 137 (198)
T COG2263 121 QRRHADRPFLLKALEIS 137 (198)
T ss_pred ccccCCHHHHHHHHHhh
Confidence 54332 34555555553
No 304
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.90 E-value=3.4e-05 Score=76.50 Aligned_cols=99 Identities=17% Similarity=0.112 Sum_probs=67.9
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCC-CCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP-YPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp-~~~~sfDlI~s~~~~~ 85 (402)
++.+|||+|||+|.++..++.. .++++|+++..+..+. +.++..+.. ..+...|+.... ...++||+|+++...-
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~-~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQ-QSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHH-HHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 4579999999999999888865 7999999998776555 445555553 345666654422 1124699999876532
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
. -...++..+. .++|++.++++..
T Consensus 312 G---~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 312 G---IGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred C---CcHHHHHHHH-hcCCCeEEEEEeC
Confidence 1 1245555554 4799999999964
No 305
>PRK03612 spermidine synthase; Provisional
Probab=97.90 E-value=2.9e-05 Score=80.28 Aligned_cols=119 Identities=14% Similarity=0.130 Sum_probs=70.1
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC-------------cccccccCCCC-CCCCCCc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG-------------LIGVMHDWCEP-FDTYPRT 318 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg-------------~~~~~~~~~~~-~~~~~~s 318 (402)
+-++|||+|||.|..+..+++++ ++ ..|+.+| ++++++.+.+.- -+..++.-... +...+++
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~-~v--~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~ 373 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYP-DV--EQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEK 373 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCC-Cc--CeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCC
Confidence 45679999999999999998774 12 2455555 455666666521 12222221111 1223479
Q ss_pred ccEEEEccccccccc--cCCHHHHHHHhhhhccCCcEEEEEeC-----hhhHHHHHHHHHhcCc
Q 015704 319 YDLLHAAGLFSVESK--RCNMSTIMLEMDRMLRPGGHVYIRDS-----IDVMDELQEIGKAMGW 375 (402)
Q Consensus 319 fD~v~~~~~~~~~~~--~~~~~~~l~e~~RvLrpgG~~~~~~~-----~~~~~~~~~~~~~~~w 375 (402)
||+|++.-.....+. .---+..+.++.|.|||||.+++... .+....+.+.+++...
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 999999732211110 00013678899999999999999532 2334455555666545
No 306
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.85 E-value=0.00015 Score=73.67 Aligned_cols=115 Identities=21% Similarity=0.320 Sum_probs=72.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccc-cCCCCCCC--CC-CcccEEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMH-DWCEPFDT--YP-RTYDLLHA 324 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~-~~~~~~~~--~~-~sfD~v~~ 324 (402)
..|||+|||+|.++..|++.+. .|+++| ++.+++.+.+. |+ +..+. +..+.+.. ++ ++||+|++
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~~-----~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~ 373 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQAA-----EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL 373 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhCC-----EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE
Confidence 3599999999999999998865 566666 45666655443 33 22322 22222222 44 68999988
Q ss_pred ccccccccccCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEeec
Q 015704 325 AGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
. +++......+..+.+ ++|++.+++|=+...+.+--..+.+-.|++...+-
T Consensus 374 d------PPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~~gY~l~~i~~ 424 (443)
T PRK13168 374 D------PPRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVEAGYRLKRAGM 424 (443)
T ss_pred C------cCCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhhCCcEEEEEEE
Confidence 7 334445666766666 69999999995554444333344344588776543
No 307
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.85 E-value=0.00012 Score=61.26 Aligned_cols=97 Identities=24% Similarity=0.343 Sum_probs=64.5
Q ss_pred EEEECCccchh--HHHHccC--CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccC--CCCCC-CCeeEEEecCccc
Q 015704 14 VMDAGCGVASF--GAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRR--LPYPS-QAFDLIHCSRCRI 85 (402)
Q Consensus 14 VLDiGcG~G~~--~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~--lp~~~-~sfDlI~s~~~~~ 85 (402)
++|+|||+|.. ...+... .++++|++..++......... .... ..+...+... +++.. ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 99999999984 3444332 567778887666542211111 2211 2344445443 77776 489999 565656
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++.. ....+.++.+.|+|+|.+++...
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEec
Confidence 6654 78999999999999999999864
No 308
>PLN02366 spermidine synthase
Probab=97.85 E-value=2.3e-05 Score=75.36 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=59.5
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhc------Cc----ccccccCC-CCCCCCC-CcccE
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR------GL----IGVMHDWC-EPFDTYP-RTYDL 321 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~r------g~----~~~~~~~~-~~~~~~~-~sfD~ 321 (402)
..++||++|||.|+.+..+++.. ++..+.++.+| +.+++.+.+. ++ +..++.-+ +-+...+ +.||+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD-~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHS-SVEQIDICEID-KMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECC-HHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 45679999999999999999874 33333343433 3344444332 11 22222211 1112234 68999
Q ss_pred EEEccccccccccC-CHHHHHHHhhhhccCCcEEEEE
Q 015704 322 LHAAGLFSVESKRC-NMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 322 v~~~~~~~~~~~~~-~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
|++...-.+..... --...+..+.|.|+|||.++..
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 99863222211100 0136789999999999999874
No 309
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.85 E-value=2e-05 Score=74.81 Aligned_cols=43 Identities=16% Similarity=0.309 Sum_probs=38.0
Q ss_pred CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 317 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 317 ~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
..||+|+|.|||.|..+ .....++..+.+.|+|||++++-.+.
T Consensus 222 ~~fD~I~cRNvliyF~~-~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 222 GPFDAIFCRNVMIYFDK-TTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred CCcceeeHhhHHhcCCH-HHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 79999999999999974 35689999999999999999987654
No 310
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.84 E-value=3.5e-05 Score=69.76 Aligned_cols=97 Identities=18% Similarity=0.169 Sum_probs=66.5
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC-CC-----CCCCCee
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LP-----YPSQAFD 76 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~-lp-----~~~~sfD 76 (402)
++++||||||++|..+..++.. .++.+|+++.....+. +..++.+.. ..+..++..+ ++ .+.++||
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~-~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIAR-ENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHH-HHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHH-HHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 5789999999999888888753 7899999886665444 444444543 2344444321 22 1135899
Q ss_pred EEEecCcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 77 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 77 lI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
+|+.-. ...+....+..+.++|+|||.+++-
T Consensus 124 ~VFiDa----~K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 124 FVFIDA----DKRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp EEEEES----TGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEcc----cccchhhHHHHHhhhccCCeEEEEc
Confidence 999532 2334578899999999999999997
No 311
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.84 E-value=6.5e-05 Score=76.08 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=71.3
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc--ccccccCCCC-CCC--CC-CcccEEEEc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMHDWCEP-FDT--YP-RTYDLLHAA 325 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~~~~~~-~~~--~~-~sfD~v~~~ 325 (402)
.|||+|||+|.++..|++... .|+++| ++.+++.+.+ .|+ +..++...+. ++. ++ .+||+|++.
T Consensus 295 ~vLDl~cG~G~~sl~la~~~~-----~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 295 LVVDAYCGVGTFTLPLAKQAK-----SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred EEEEcCCCcCHHHHHHHHhCC-----EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 599999999999999998865 455555 3455554443 243 3334332222 222 22 589999976
Q ss_pred cccccccccCC-HHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEee
Q 015704 326 GLFSVESKRCN-MSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 326 ~~~~~~~~~~~-~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 381 (402)
+++.+ ...++.++.+ |+|+|.++++-+.....+.-..+.+-.|++....
T Consensus 370 ------PPr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~~~~ 419 (431)
T TIGR00479 370 ------PPRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGITWVQ 419 (431)
T ss_pred ------cCCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEEEEE
Confidence 22323 3566676665 8999999999666555555555555567765543
No 312
>PLN02476 O-methyltransferase
Probab=97.84 E-value=5.5e-05 Score=71.40 Aligned_cols=97 Identities=9% Similarity=0.055 Sum_probs=67.1
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccc-cCCC-C----CCCCee
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFAT-RRLP-Y----PSQAFD 76 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~-~~lp-~----~~~sfD 76 (402)
++++|||+|+++|..+..++.. .++++|.++.....+. +..++.+.. ..+..+++ +.++ + ..++||
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar-~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAK-RYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 5689999999999988877753 5889999987665554 333445554 23444443 2222 1 136899
Q ss_pred EEEecCcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 77 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 77 lI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
+|+.-. ...+...++..+.++|+|||.+++-
T Consensus 197 ~VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 197 FAFVDA----DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EEEECC----CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 999532 2334578899999999999999886
No 313
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.83 E-value=1.1e-05 Score=74.84 Aligned_cols=97 Identities=21% Similarity=0.207 Sum_probs=69.5
Q ss_pred CCeEEEECCccchhHHHHccCCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccccccC
Q 015704 11 LRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRD 90 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~~~d 90 (402)
+..++|+|||.|-.+..-....+++.|++..- ...++..+.. .....|+..+|+.+.+||.+++..+.+|+...
T Consensus 46 gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l-----~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGL-----LGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cceeeecccCCcccCcCCCcceeeecchhhhh-----ccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 66899999999965432222245666665432 2444444432 45566889999999999999998888887754
Q ss_pred h--HHHHHHHHHhcCCCeEEEEEeC
Q 015704 91 D--GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 91 ~--~~~l~e~~r~LkpgG~li~~~~ 113 (402)
. ..+++++.|+|+|||...+...
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEe
Confidence 3 6799999999999999777643
No 314
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.82 E-value=2.6e-05 Score=70.28 Aligned_cols=103 Identities=18% Similarity=0.215 Sum_probs=68.4
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCC---CcEEEeccccCC--CCCCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA---PAMVAAFATRRL--PYPSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~---~~~~~~~d~~~l--p~~~~sfDlI~s 80 (402)
+.+.+|||.+.|-|+.+...+++ .|+.++.++.-+.-+.++- -.+++ ...+..+|+.++ .|++++||+|+-
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNP-wSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNP-WSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCC-CCccccccccEEecccHHHHHhcCCccccceEee
Confidence 35789999999999999887776 6777888776553332110 00111 123444554332 377899999996
Q ss_pred cCcccccccCh--HHHHHHHHHhcCCCeEEEEEe
Q 015704 81 SRCRINWTRDD--GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 81 ~~~~~~~~~d~--~~~l~e~~r~LkpgG~li~~~ 112 (402)
-..-+.....+ ..+.+|++|+|||||.++-.+
T Consensus 212 DPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 212 DPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred CCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 44433333332 678999999999999998774
No 315
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.82 E-value=0.00023 Score=66.63 Aligned_cols=146 Identities=18% Similarity=0.205 Sum_probs=89.1
Q ss_pred CCCCeEEEECCccchhHHHHccC------CceEEeCCccchHHHHHHHHHHcCCCcE--EEeccccC---CCCCCCCeeE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFALERGAPAM--VAAFATRR---LPYPSQAFDL 77 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~------~v~~vdi~~~~~~~a~~~~a~~~~~~~~--~~~~d~~~---lp~~~~sfDl 77 (402)
+.+-+||||.||.|+...-.... .+.-.|.++..+.... +..+++++..+ +...|+.+ +.--+...++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~-~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR-ALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH-HHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 35669999999999765433322 5667788887775554 66667777653 55555322 2212345689
Q ss_pred EEecCcccccccCh--HHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHHHHHhhhhhcceeeeeccceEEEeecCCC
Q 015704 78 IHCSRCRINWTRDD--GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTN 155 (402)
Q Consensus 78 I~s~~~~~~~~~d~--~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (402)
++.+..+..+.++. ...+..+.+.+.|||+++.+..|-...+.-+......- .....|-.. .++..
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsH---r~g~~WvMR---------rRsq~ 280 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSH---RDGKAWVMR---------RRSQA 280 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcc---cCCCceEEE---------ecCHH
Confidence 98887766665432 56799999999999999999765433333222221110 011234332 23334
Q ss_pred hhhhhhhhcCCC
Q 015704 156 NSCYLNREAGTI 167 (402)
Q Consensus 156 ~~~~~l~~aGf~ 167 (402)
++-.+...|||.
T Consensus 281 EmD~Lv~~aGF~ 292 (311)
T PF12147_consen 281 EMDQLVEAAGFE 292 (311)
T ss_pred HHHHHHHHcCCc
Confidence 455578889995
No 316
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.80 E-value=7.4e-05 Score=72.43 Aligned_cols=112 Identities=16% Similarity=0.248 Sum_probs=70.4
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc--ccccccCCCCCCC-CCCcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMHDWCEPFDT-YPRTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~~~~~~~~~-~~~sfD~v~~~~~ 327 (402)
..|||+|||+|.|+..|++++. .|+++| ++.+++.+.+ .|+ +..+..-.+.+.. .+..||+|++.
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~-----~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d-- 247 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGM-----QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN-- 247 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCC-----EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC--
Confidence 4699999999999999999876 566666 4556654433 344 2233222222221 22579999988
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEeChhhH-HHHHHHHHhcCceEEEee
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVM-DELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~ 381 (402)
+++......+.++..-++|++.++++-+.... +.++.+ -.|++..-.
T Consensus 248 ----PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l---~~y~~~~~~ 295 (315)
T PRK03522 248 ----PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL---PGYRIERVQ 295 (315)
T ss_pred ----CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc---cCcEEEEEE
Confidence 44555555555666668999999999655443 333333 257766543
No 317
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.78 E-value=7.8e-05 Score=63.87 Aligned_cols=98 Identities=16% Similarity=0.105 Sum_probs=69.3
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC-----CCCCCeeEEE
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP-----YPSQAFDLIH 79 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp-----~~~~sfDlI~ 79 (402)
++.-|||+|.|||-++..++++ .+++++.++. ......+......+..+|+..+. +++..||.|+
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~d-----F~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~vi 122 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPD-----FVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVI 122 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHH-----HHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEE
Confidence 4568999999999999999887 4566666653 22333333333335555544443 4567899999
Q ss_pred ecCcccccccCh-HHHHHHHHHhcCCCeEEEEEe
Q 015704 80 CSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 80 s~~~~~~~~~d~-~~~l~e~~r~LkpgG~li~~~ 112 (402)
|...++.++... .+.++++...|.+||.++--+
T Consensus 123 S~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 123 SGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred eccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 987777766543 578999999999999988764
No 318
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.78 E-value=3.6e-05 Score=73.57 Aligned_cols=97 Identities=22% Similarity=0.298 Sum_probs=69.0
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCC-CCChhhHHhcCc---ccccccCCCCCCCCC-CcccEEEEcc---c
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL---IGVMHDWCEPFDTYP-RTYDLLHAAG---L 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~-~~~~~~~~~rg~---~~~~~~~~~~~~~~~-~sfD~v~~~~---~ 327 (402)
+.|||+|||+|.++..-|+.|+ ..|..|...+. .-..+++...|+ |.++...-|.+ ..| ...|+|.+-- .
T Consensus 62 K~VlDVGcGtGILS~F~akAGA-~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi-~LP~eKVDiIvSEWMGy~ 139 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGA-RKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDI-ELPVEKVDIIVSEWMGYF 139 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCc-ceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEE-ecCccceeEEeehhhhHH
Confidence 3499999999999999999986 56666666552 333466667776 66677666776 577 8999999841 1
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
+.| ...+..+|.-=+|.|+|||.++=+
T Consensus 140 Ll~---EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 140 LLY---ESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred HHH---hhhhhhhhhhhhhccCCCceEccc
Confidence 111 113457788888999999987644
No 319
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.77 E-value=0.00012 Score=66.16 Aligned_cols=132 Identities=22% Similarity=0.298 Sum_probs=83.7
Q ss_pred ceEEeccccchHHHHHHhhcCC-CceEEEeccCCCCCChhhHH----hcCc----ccccc-cCCCCCCCCC-CcccEEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKF-DCWVMNVVPVSGFNTLPVIY----DRGL----IGVMH-DWCEPFDTYP-RTYDLLHA 324 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~-~~~~~~v~~~~~~~~~~~~~----~rg~----~~~~~-~~~~~~~~~~-~sfD~v~~ 324 (402)
.+|||.=.|.|.+|..-+++|+ .|..+.+.| +.++.|. .|++ +..++ +..+.+.+|+ .|||+|+-
T Consensus 136 ~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp----~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 136 ERVLDTCTGLGYTAIEALERGAIHVITVEKDP----NVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred CEeeeeccCccHHHHHHHHcCCcEEEEEeeCC----CeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 3599999999999999999998 333333333 2232221 2232 23333 3345567788 79997754
Q ss_pred c-cccccccccCCHHHHHHHhhhhccCCcEEEEEeC--------hhhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEE
Q 015704 325 A-GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS--------IDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTA 395 (402)
Q Consensus 325 ~-~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~--------~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~ 395 (402)
. -=|++....- -+..-.|+.|||||||.++==.. .+....+.+.+.+..+.+.....+.. -++|
T Consensus 212 DPPRfS~AgeLY-seefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~~~------gv~A 284 (287)
T COG2521 212 DPPRFSLAGELY-SEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVREAL------GVVA 284 (287)
T ss_pred CCCccchhhhHh-HHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehhcc------ceEE
Confidence 2 2233322100 15788999999999999875432 25678888889999998776665432 2566
Q ss_pred Eec
Q 015704 396 DKR 398 (402)
Q Consensus 396 ~k~ 398 (402)
+|+
T Consensus 285 ~k~ 287 (287)
T COG2521 285 VKP 287 (287)
T ss_pred ecC
Confidence 663
No 320
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.76 E-value=5e-05 Score=71.47 Aligned_cols=70 Identities=13% Similarity=0.134 Sum_probs=50.7
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
++.+|||+|||+|.++..+++. .++++|+++.++..+.... .. .....+..+|...++++ .||.|++|..
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~-~~-~~~v~ii~~D~~~~~~~--~~d~Vv~NlP 100 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDE-IA-AGNVEIIEGDALKVDLP--EFNKVVSNLP 100 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHh-cc-CCCEEEEEeccccCCch--hceEEEEcCC
Confidence 5679999999999999999876 7899999987665443222 11 12344666777777665 4899998865
No 321
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=97.75 E-value=6.6e-05 Score=65.89 Aligned_cols=93 Identities=16% Similarity=0.167 Sum_probs=56.6
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC----cccccccCCCCCCCCC-CcccEEEEcccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----LIGVMHDWCEPFDTYP-RTYDLLHAAGLFSV 330 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg----~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~ 330 (402)
.|||+|||+|.++..|++++. .|+++| ++.+++.+.++- -+..++.-...++ ++ .+||.|++.--+ |
T Consensus 16 ~vLEiG~G~G~lt~~l~~~~~-----~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~-~~~~~~d~vi~n~Py-~ 88 (169)
T smart00650 16 TVLEIGPGKGALTEELLERAA-----RVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD-LPKLQPYKVVGNLPY-N 88 (169)
T ss_pred EEEEECCCccHHHHHHHhcCC-----eEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC-ccccCCCEEEECCCc-c
Confidence 599999999999999999865 555555 345665554441 1334444333322 44 469999886333 2
Q ss_pred ccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 331 ESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 331 ~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
.. ...+..++.+. .+.++|++++...
T Consensus 89 ~~-~~~i~~~l~~~--~~~~~~~l~~q~e 114 (169)
T smart00650 89 IS-TPILFKLLEEP--PAFRDAVLMVQKE 114 (169)
T ss_pred cH-HHHHHHHHhcC--CCcceEEEEEEHH
Confidence 22 11233333322 2569999999853
No 322
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.75 E-value=5.1e-05 Score=71.22 Aligned_cols=103 Identities=18% Similarity=0.235 Sum_probs=66.4
Q ss_pred CCCeEEEECCccc----hhHHHHccC---------CceEEeCCccchHHHHHH----HHHHcCC-------------C--
Q 015704 10 LLRVVMDAGCGVA----SFGAYLLPR---------NVITMSIAPKDVHENQIQ----FALERGA-------------P-- 57 (402)
Q Consensus 10 ~~~~VLDiGcG~G----~~~~~L~~~---------~v~~vdi~~~~~~~a~~~----~a~~~~~-------------~-- 57 (402)
.+-+|+-+||+|| +++..|.+. +|.|+|++...+..|..- ....+++ .
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3669999999999 333333321 678888887766555431 0110111 0
Q ss_pred ----------cEEEeccccCCCCCCCCeeEEEecCcccccccCh-HHHHHHHHHhcCCCeEEEEEe
Q 015704 58 ----------AMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 58 ----------~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~~~d~-~~~l~e~~r~LkpgG~li~~~ 112 (402)
..+...+...-++..+.||+|+|-+++.++.... .++++.++..|+|||+|++..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 0122223222222446799999999988887553 689999999999999999984
No 323
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.75 E-value=4.2e-05 Score=72.56 Aligned_cols=72 Identities=14% Similarity=0.050 Sum_probs=51.1
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..++++ .++++|+++.++..+..... .....+..+|+..+++++-.+|.|++|..
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKVDLSELQPLKVVANLP 114 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcCCHHHcCcceEEEeCC
Confidence 35679999999999999988876 78999999877655432211 12345667787777765433588988754
No 324
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.74 E-value=7.9e-05 Score=75.32 Aligned_cols=96 Identities=21% Similarity=0.274 Sum_probs=61.2
Q ss_pred CCeEEEECCccchhHHHHcc--------CCceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEe
Q 015704 11 LRVVMDAGCGVASFGAYLLP--------RNVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHC 80 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~--------~~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s 80 (402)
...|||+|||+|.+....++ ..|.+++-++......+ +..+..+. ...+...|++....+ .++|+|||
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANGWGDKVTVIHGDMREVELP-EKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEE
Confidence 56899999999987654432 27899998875543322 33234443 345777888888766 48999997
Q ss_pred cCcccccccC--hHHHHHHHHHhcCCCeEEE
Q 015704 81 SRCRINWTRD--DGILLLEVNRMLRAGGYFA 109 (402)
Q Consensus 81 ~~~~~~~~~d--~~~~l~e~~r~LkpgG~li 109 (402)
-.+ -.+..+ ....|....|.|||||.++
T Consensus 265 ElL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 ELL-GSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ecc-CCccccccCHHHHHHHHhhcCCCCEEe
Confidence 433 333322 2567888899999999865
No 325
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.73 E-value=3.9e-05 Score=74.49 Aligned_cols=124 Identities=16% Similarity=0.279 Sum_probs=67.5
Q ss_pred HHhhHHHH--HHHHHHHHhcccCCCCcceEEeccccchH-HHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC------
Q 015704 231 KAESKYWN--EIIESYVRALHWKKMKLRNVLDMRAGFGG-FAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG------ 300 (402)
Q Consensus 231 ~~~~~~w~--~~~~~y~~~~~~~~~~~~~vLD~g~g~G~-~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg------ 300 (402)
.+.-..|- .+|..|........ .-..|||+|||-|| ..-+...+- -.++++| +...++.|.+|=
T Consensus 38 lR~fNNwvKs~LI~~~~~~~~~~~-~~~~VLDl~CGkGGDL~Kw~~~~i-----~~~vg~Dis~~si~ea~~Ry~~~~~~ 111 (331)
T PF03291_consen 38 LRNFNNWVKSVLIQKYAKKVKQNR-PGLTVLDLCCGKGGDLQKWQKAKI-----KHYVGIDISEESIEEARERYKQLKKR 111 (331)
T ss_dssp HHHHHHHHHHHHHHHHCHCCCCTT-TT-EEEEET-TTTTTHHHHHHTT------SEEEEEES-HHHHHHHHHHHHHHHTS
T ss_pred HHHHhHHHHHHHHHHHHHhhhccC-CCCeEEEecCCCchhHHHHHhcCC-----CEEEEEeCCHHHHHHHHHHHHHhccc
Confidence 33444464 33446654332221 44569999999998 444444332 2455555 344455454442
Q ss_pred ---------c-ccccccCC--CCCC-CCC---CcccEEEEccccccc-cccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 301 ---------L-IGVMHDWC--EPFD-TYP---RTYDLLHAAGLFSVE-SKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 301 ---------~-~~~~~~~~--~~~~-~~~---~sfD~v~~~~~~~~~-~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
. ...++.-| +.+. .++ ..||+|=|.-.|+|. .........|.-+...|||||+||.+-+.
T Consensus 112 ~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 112 NNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp TT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 1 11122111 1111 133 499999999888884 22333457999999999999999999655
No 326
>PLN02476 O-methyltransferase
Probab=97.73 E-value=8.9e-05 Score=69.99 Aligned_cols=130 Identities=14% Similarity=0.169 Sum_probs=76.7
Q ss_pred CcceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhH----HhcCc---ccccccC-CCCCCCC-----CCc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVI----YDRGL---IGVMHDW-CEPFDTY-----PRT 318 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~----~~rg~---~~~~~~~-~~~~~~~-----~~s 318 (402)
+.++||++|+++|..+.+|+.. +.+. .|+.+| .+...+.| .+.|+ +..++.- .+.++.+ +.+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G---~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESG---CLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 4567999999999999998863 1111 244444 23333333 33455 3333221 1112222 258
Q ss_pred ccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC------------hhhHHHHHHHHH----hcCceEEEeec
Q 015704 319 YDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS------------IDVMDELQEIGK----AMGWHVTLRET 382 (402)
Q Consensus 319 fD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~------------~~~~~~~~~~~~----~~~w~~~~~~~ 382 (402)
||+|+... ++.+...++....+.|||||.+++.+- ......|+++.+ .=++...+--.
T Consensus 195 FD~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPi 268 (278)
T PLN02476 195 YDFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPI 268 (278)
T ss_pred CCEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEe
Confidence 99999882 244567899999999999999998731 111224555444 44566666544
Q ss_pred CCCCCCceEEEEEEec
Q 015704 383 AEGPHASYRILTADKR 398 (402)
Q Consensus 383 ~~~~~~~~~~l~~~k~ 398 (402)
.+ .+++++|.
T Consensus 269 gD------Gl~i~~K~ 278 (278)
T PLN02476 269 GD------GMTICRKR 278 (278)
T ss_pred CC------eeEEEEEC
Confidence 33 37777773
No 327
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.71 E-value=7.3e-05 Score=70.44 Aligned_cols=63 Identities=11% Similarity=0.182 Sum_probs=44.5
Q ss_pred CC-CcccEEEEccccccc-cccCCHHHHHHHhhhhccCCcEEEEEeCh--hhHHHHHHHHHhcCceEE
Q 015704 315 YP-RTYDLLHAAGLFSVE-SKRCNMSTIMLEMDRMLRPGGHVYIRDSI--DVMDELQEIGKAMGWHVT 378 (402)
Q Consensus 315 ~~-~sfD~v~~~~~~~~~-~~~~~~~~~l~e~~RvLrpgG~~~~~~~~--~~~~~~~~~~~~~~w~~~ 378 (402)
++ .+||+|-|.-+|+|. ..-....-+|+-+.+.|||||+||=|-++ .++.+++.. ...+|--.
T Consensus 192 ~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~-e~~~~gNd 258 (389)
T KOG1975|consen 192 FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG-EVERFGND 258 (389)
T ss_pred CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc-cchhhcce
Confidence 45 459999998777763 22223357899999999999999999554 566777766 33455433
No 328
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.70 E-value=0.00013 Score=68.53 Aligned_cols=135 Identities=18% Similarity=0.208 Sum_probs=86.6
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHH--HHHHHcC--------------------C-----C--
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQI--QFALERG--------------------A-----P-- 57 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~--~~a~~~~--------------------~-----~-- 57 (402)
+...+||--|||.|+++-.++.+ .+.+.|+|..|+-.... ....+.+ + +
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 34579999999999999999987 67778888777533221 1100000 0 0
Q ss_pred -----------cEEEeccccCCCCCC---CCeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEeCCCCCChHH--
Q 015704 58 -----------AMVAAFATRRLPYPS---QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEA-- 121 (402)
Q Consensus 58 -----------~~~~~~d~~~lp~~~---~sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~e-- 121 (402)
.....+|...+..++ ++||.|++. .++.-..+.-..+..+.++|||||+.|=..|..++....
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~-FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~ 213 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC-FFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSI 213 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEE-EEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCC
Confidence 001112222222223 689999865 345555567889999999999999887776544544432
Q ss_pred -----HHHHHHHHHhhhhhcceeeeecc
Q 015704 122 -----QEEHWKEMLDLTTRLCWELVKKE 144 (402)
Q Consensus 122 -----l~~~~~~~~~~~~~~~~~~~~~~ 144 (402)
+.-.|.++..+.+..+|+.+.+.
T Consensus 214 ~~~~sveLs~eEi~~l~~~~GF~~~~~~ 241 (270)
T PF07942_consen 214 PNEMSVELSLEEIKELIEKLGFEIEKEE 241 (270)
T ss_pred CCCcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 45567888888888888877633
No 329
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.69 E-value=0.0001 Score=61.62 Aligned_cols=94 Identities=24% Similarity=0.307 Sum_probs=55.8
Q ss_pred EEeccccchHH--HHHHhhcCCCceEEEeccCC-CCCChhhHHhcC----c--ccccccCCCC-CCCCCC--cccEEEEc
Q 015704 258 VLDMRAGFGGF--AAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----L--IGVMHDWCEP-FDTYPR--TYDLLHAA 325 (402)
Q Consensus 258 vLD~g~g~G~~--~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg----~--~~~~~~~~~~-~~~~~~--sfD~v~~~ 325 (402)
+||+|||.|.. ...+...++ .++++| +..++..+..+. . +..+...... ..+++. +||++ +.
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~ 125 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGA-----YVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-IS 125 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCc-----eEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-ee
Confidence 99999999984 444443322 233343 333333322222 1 1222221111 234443 89999 66
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
....|..+ +...+.++.|+|+|+|.+++.+..
T Consensus 126 ~~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 126 LLVLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred eeehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 55555443 689999999999999999999754
No 330
>PHA03412 putative methyltransferase; Provisional
Probab=97.69 E-value=0.0001 Score=67.58 Aligned_cols=98 Identities=15% Similarity=0.136 Sum_probs=58.3
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-ccccccCCCCCCCC--CCcccEEEEccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTY--PRTYDLLHAAGLFSVE 331 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~~~~~~~~~~~~~--~~sfD~v~~~~~~~~~ 331 (402)
.+|||+|||+|.++..++.+.......+|+++| .+.+++.+...-. +..++ .++..+ +.+||+|+|.==+.-+
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~---~D~~~~~~~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWIN---ADALTTEFDTLFDMAISNPPFGKI 127 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEE---cchhcccccCCccEEEECCCCCCc
Confidence 369999999999999988642100123677776 5667776664321 22232 222223 3699999996333211
Q ss_pred c-----c---cCC-HHHHHHHhhhhccCCcEEEEE
Q 015704 332 S-----K---RCN-MSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 332 ~-----~---~~~-~~~~l~e~~RvLrpgG~~~~~ 357 (402)
. . ... ...++....|+++||+. |+=
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP 161 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF-IIP 161 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEE-EeC
Confidence 1 0 111 33578888898888886 543
No 331
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.69 E-value=0.00016 Score=67.77 Aligned_cols=73 Identities=19% Similarity=0.161 Sum_probs=49.7
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCee---EEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFD---LIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfD---lI~s~~~~ 84 (402)
++.+|||+|||+|.++..++++ .++++|+++.++..+.... .. .....+...|+..++++ +|| +|+++..
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~-~~-~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlP- 103 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLL-SL-YERLEVIEGDALKVDLP--DFPKQLKVVSNLP- 103 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHh-Cc-CCcEEEEECchhcCChh--HcCCcceEEEcCC-
Confidence 5679999999999999999876 7899999886664433211 11 12334566677777654 566 8887644
Q ss_pred ccc
Q 015704 85 INW 87 (402)
Q Consensus 85 ~~~ 87 (402)
+++
T Consensus 104 y~i 106 (253)
T TIGR00755 104 YNI 106 (253)
T ss_pred hhh
Confidence 443
No 332
>PRK04148 hypothetical protein; Provisional
Probab=97.68 E-value=0.00011 Score=61.42 Aligned_cols=63 Identities=17% Similarity=0.284 Sum_probs=46.0
Q ss_pred ceEEeccccchH-HHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCCCCC--CcccEEEEc
Q 015704 256 RNVLDMRAGFGG-FAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYP--RTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~-~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~~~~--~sfD~v~~~ 325 (402)
..|||+|||+|. ++..|++.|. +|+++| ++..++.+.++++-...-|..+ +++. ..+|+|.+.
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G~-----~ViaIDi~~~aV~~a~~~~~~~v~dDlf~--p~~~~y~~a~liysi 84 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESGF-----DVIVIDINEKAVEKAKKLGLNAFVDDLFN--PNLEIYKNAKLIYSI 84 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCCC-----EEEEEECCHHHHHHHHHhCCeEEECcCCC--CCHHHHhcCCEEEEe
Confidence 569999999996 9999999998 566666 4556777888887444444443 2233 689999988
No 333
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.68 E-value=0.00041 Score=70.53 Aligned_cols=103 Identities=17% Similarity=0.268 Sum_probs=68.1
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCCC-CCCCCeeEEE--
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLP-YPSQAFDLIH-- 79 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~~lp-~~~~sfDlI~-- 79 (402)
.++.+|||++||.|.=+.++++. .+++.|++..-+.... +...+.+..+. +...|...++ ...+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~-~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLH-ANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 57789999999999766666543 6889999886554333 44455566553 4445554442 2236799999
Q ss_pred --ecCcc---------cccccC--------hHHHHHHHHHhcCCCeEEEEEe
Q 015704 80 --CSRCR---------INWTRD--------DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 80 --s~~~~---------~~~~~d--------~~~~l~e~~r~LkpgG~li~~~ 112 (402)
|+..- ..|..+ ...+|..+.+.|||||.++.+|
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 44221 112111 1367888999999999999997
No 334
>PLN02823 spermine synthase
Probab=97.68 E-value=0.00025 Score=69.04 Aligned_cols=103 Identities=19% Similarity=0.159 Sum_probs=63.8
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHc----CCCcEEEecccc-CCCCCCCCeeEEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER----GAPAMVAAFATR-RLPYPSQAFDLIH 79 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~----~~~~~~~~~d~~-~lp~~~~sfDlI~ 79 (402)
..+++||.+|+|.|..+..+++. .++.+|+++..+..+...+.... .....+...|.. -+....++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 35679999999999998877764 57888888765543332211110 112224444422 2233457899999
Q ss_pred ecCcccccccC------hHHHHH-HHHHhcCCCeEEEEEe
Q 015704 80 CSRCRINWTRD------DGILLL-EVNRMLRAGGYFAWAA 112 (402)
Q Consensus 80 s~~~~~~~~~d------~~~~l~-e~~r~LkpgG~li~~~ 112 (402)
+- +.-.+... -..+++ .+.+.|+|||.+++..
T Consensus 182 ~D-~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 182 GD-LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ec-CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 64 22222111 146777 8999999999998763
No 335
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.67 E-value=5.4e-05 Score=74.20 Aligned_cols=102 Identities=17% Similarity=0.209 Sum_probs=74.9
Q ss_pred CCCCeEEEECCccchhHHHHcc---CCceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP---RNVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~---~~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++..++|+|||.|....+... .++++++.++..+........ ...+. ..+...+.-..|++++.||.+.+..+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~-~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAK-KAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHH-HHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence 3455899999999987766654 377777777665544442222 22221 22466678888999999999999887
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
..|.. ++..+++|++|+++|||+++...
T Consensus 188 ~~~~~-~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 188 VCHAP-DLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred cccCC-cHHHHHHHHhcccCCCceEEeHH
Confidence 55544 89999999999999999998873
No 336
>PRK00536 speE spermidine synthase; Provisional
Probab=97.67 E-value=0.00068 Score=63.55 Aligned_cols=96 Identities=19% Similarity=0.135 Sum_probs=62.3
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHH---HHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQI---QFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~---~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++++||=+|.|.|..++.+++. +|+-+|+++..+..+.. ..+.....+..-...... .-..++||+|+.-..
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~--~~~~~~fDVIIvDs~ 148 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLL--DLDIKKYDLIICLQE 148 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhh--hccCCcCCEEEEcCC
Confidence 46789999999999999999886 68888888755533321 011101111111111111 112368999996432
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
....+.+.+++.|+|||.++..+
T Consensus 149 ------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 149 ------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred ------CChHHHHHHHHhcCCCcEEEECC
Confidence 34678899999999999999974
No 337
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.66 E-value=2e-05 Score=73.22 Aligned_cols=92 Identities=20% Similarity=0.183 Sum_probs=59.1
Q ss_pred EEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCCCCC-CcccEEEEccccccccccC
Q 015704 258 VLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESKRC 335 (402)
Q Consensus 258 vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~~~~ 335 (402)
+||+|||.|-. +... .-..+.+.| ...-+..+...|-....-..+.. .+++ .+||.+.+..|++|+..++
T Consensus 49 ~~d~gCGngky---~~~~----p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~-~p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 49 GLDVGCGNGKY---LGVN----PLCLIIGCDLCTGLLGGAKRSGGDNVCRADALK-LPFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred eeecccCCccc---CcCC----CcceeeecchhhhhccccccCCCceeehhhhhc-CCCCCCccccchhhhhhhhhhhHH
Confidence 99999999932 2111 111233333 23333344333331111111222 3355 7999999999999999888
Q ss_pred CHHHHHHHhhhhccCCcEEEEE
Q 015704 336 NMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 336 ~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
.-..+|.|+.|+|||||...+.
T Consensus 121 RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 121 RRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred HHHHHHHHHHHHhcCCCceEEE
Confidence 8899999999999999996665
No 338
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.66 E-value=0.0003 Score=66.65 Aligned_cols=98 Identities=17% Similarity=0.124 Sum_probs=63.8
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCC--------C-cEEEeccc-cCCCCCCCCe
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA--------P-AMVAAFAT-RRLPYPSQAF 75 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~--------~-~~~~~~d~-~~lp~~~~sf 75 (402)
++++||-||-|.|..++.+.+. +++.+|+++.-+ +.+++... + ..+...|. +-+.-..++|
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi-----~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~f 150 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVI-----ELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKF 150 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHH-----HHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcC
Confidence 3469999999999999999876 678888876544 44444311 1 12333332 2222223489
Q ss_pred eEEEecCcccccccC----hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 76 DLIHCSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 76 DlI~s~~~~~~~~~d----~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+|++-.. -...+. -..+++.+++.|+++|+++..+.
T Consensus 151 DvIi~D~t-dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~ 191 (282)
T COG0421 151 DVIIVDST-DPVGPAEALFTEEFYEGCRRALKEDGIFVAQAG 191 (282)
T ss_pred CEEEEcCC-CCCCcccccCCHHHHHHHHHhcCCCcEEEEecC
Confidence 99996432 221110 16899999999999999999853
No 339
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.62 E-value=0.00054 Score=60.89 Aligned_cols=110 Identities=22% Similarity=0.168 Sum_probs=67.2
Q ss_pred ccCCCCCeEEEECCccchhHHHH----ccCCceEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCCCCCCCCeeEEEe
Q 015704 6 TWIRLLRVVMDAGCGVASFGAYL----LPRNVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLPYPSQAFDLIHC 80 (402)
Q Consensus 6 ~~~~~~~~VLDiGcG~G~~~~~L----~~~~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~~lp~~~~sfDlI~s 80 (402)
.+.....+++|+|+|.|.-+..| .+.+++-+|....-.. .....+++-++.+. +....++. +....+||+|++
T Consensus 44 ~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~-FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~a 121 (184)
T PF02527_consen 44 FLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVA-FLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTA 121 (184)
T ss_dssp CS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHH-HHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEE
T ss_pred hhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHH-HHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEe
Confidence 33344448999999999443333 3347788887764321 11233445567644 55555666 555689999997
Q ss_pred cCcccccccChHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHH
Q 015704 81 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 124 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~ 124 (402)
-.+ .+...++.-+.+.+++||.+++-- +.....|+.+
T Consensus 122 RAv-----~~l~~l~~~~~~~l~~~G~~l~~K--G~~~~~El~~ 158 (184)
T PF02527_consen 122 RAV-----APLDKLLELARPLLKPGGRLLAYK--GPDAEEELEE 158 (184)
T ss_dssp ESS-----SSHHHHHHHHGGGEEEEEEEEEEE--SS--HHHHHT
T ss_pred ehh-----cCHHHHHHHHHHhcCCCCEEEEEc--CCChHHHHHH
Confidence 543 256788999999999999998874 3444444443
No 340
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.57 E-value=0.00057 Score=61.16 Aligned_cols=100 Identities=14% Similarity=-0.045 Sum_probs=63.4
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC-CC-C-C-CCCeeEEEe
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LP-Y-P-SQAFDLIHC 80 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~-lp-~-~-~~sfDlI~s 80 (402)
.+.+|||++||+|.++..++.+ .++++|.++..+.... +.+...+.. ..+...|+.. +. + . ...||+|+.
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~-~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLK-ENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 4679999999999999988876 6889999987665444 333334443 2355555422 22 1 1 224788886
Q ss_pred cCcccccccChHHHHHHHH--HhcCCCeEEEEEe
Q 015704 81 SRCRINWTRDDGILLLEVN--RMLRAGGYFAWAA 112 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~--r~LkpgG~li~~~ 112 (402)
... +.. ......+..+. .+|+++|.+++..
T Consensus 128 DPP-y~~-~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 128 DPP-FFN-GALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred CcC-CCC-CcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 544 221 12345555443 4799999998885
No 341
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.57 E-value=0.00039 Score=69.02 Aligned_cols=113 Identities=13% Similarity=0.156 Sum_probs=68.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCC-CCCcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDT-YPRTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~-~~~sfD~v~~~~~ 327 (402)
++|||++||+|.|+..++.++. .|+++| ++.+++.+.+. |+ +..+....+.+.. ...+||+|++.
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~-----~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D-- 307 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDT-----QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN-- 307 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCC-----eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC--
Confidence 4699999999999999998876 455555 34455444332 33 2223222122111 11469999998
Q ss_pred cccccccCCH-HHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEeec
Q 015704 328 FSVESKRCNM-STIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 328 ~~~~~~~~~~-~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
+++... ..++..+ .-++|++.++++-+.....+--..+ -.|++...+-
T Consensus 308 ----PPr~G~~~~~l~~l-~~~~p~~ivyvsc~p~TlaRDl~~L--~gy~l~~~~~ 356 (374)
T TIGR02085 308 ----PPRRGIGKELCDYL-SQMAPKFILYSSCNAQTMAKDIAEL--SGYQIERVQL 356 (374)
T ss_pred ----CCCCCCcHHHHHHH-HhcCCCeEEEEEeCHHHHHHHHHHh--cCceEEEEEE
Confidence 444443 3444444 4589999999997765544444444 3588776543
No 342
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.57 E-value=8.6e-05 Score=67.94 Aligned_cols=119 Identities=20% Similarity=0.270 Sum_probs=77.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHH-hcCccccc--------------ccCCCCCCCCC---
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIY-DRGLIGVM--------------HDWCEPFDTYP--- 316 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~-~rg~~~~~--------------~~~~~~~~~~~--- 316 (402)
.+||+-|||.|.-+..|+++|+ +|+++| ++..++.++ ++++-... .-++.+|-.++
T Consensus 39 ~rvLvPgCG~g~D~~~La~~G~-----~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 39 GRVLVPGCGKGYDMLWLAEQGH-----DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp EEEEETTTTTSCHHHHHHHTTE-----EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CeEEEeCCCChHHHHHHHHCCC-----eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 4599999999999999999998 566666 444555543 34431110 11122333332
Q ss_pred -CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEE-E-e--------Ch--hhHHHHHHHHHhcCceEEEee
Q 015704 317 -RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYI-R-D--------SI--DVMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 317 -~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~-~-~--------~~--~~~~~~~~~~~~~~w~~~~~~ 381 (402)
..||+|+=...|.-++ ...-.....-|.++|||||.+++ + + +. -..+.+++++. -.|++..-.
T Consensus 114 ~g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp HHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEE
T ss_pred cCCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEe
Confidence 3699999999998887 45678999999999999999433 3 1 11 12566777766 788876643
No 343
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.56 E-value=0.00014 Score=69.53 Aligned_cols=76 Identities=20% Similarity=0.235 Sum_probs=52.4
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHc-CCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALER-GAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~-~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
++.+|||||||+|.++..+++. .++++|+++.++..+........ .....+...|+...++ ..||.|++|.. ++
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~~d~VvaNlP-Y~ 112 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PYFDVCVANVP-YQ 112 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cccCEEEecCC-cc
Confidence 5679999999999999988865 79999999877765543333211 1233466667655544 36899998754 55
Q ss_pred cc
Q 015704 87 WT 88 (402)
Q Consensus 87 ~~ 88 (402)
+.
T Consensus 113 Is 114 (294)
T PTZ00338 113 IS 114 (294)
T ss_pred cC
Confidence 44
No 344
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.56 E-value=0.00013 Score=73.78 Aligned_cols=129 Identities=21% Similarity=0.246 Sum_probs=70.1
Q ss_pred hhhhHHhhHHHHHHHHHHHHhcc--cCCC----CcceEEeccccchHHHHHHhhcCCC-ceEEEeccCCC-CCChh----
Q 015704 227 KELFKAESKYWNEIIESYVRALH--WKKM----KLRNVLDMRAGFGGFAAALIEQKFD-CWVMNVVPVSG-FNTLP---- 294 (402)
Q Consensus 227 ~~~~~~~~~~w~~~~~~y~~~~~--~~~~----~~~~vLD~g~g~G~~~~~l~~~~~~-~~~~~v~~~~~-~~~~~---- 294 (402)
.+.|+.|.-+...+-+.-.+.+. .... +-..|||+|||.|......++.++. .....|.+++. +++..
T Consensus 153 Ye~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~ 232 (448)
T PF05185_consen 153 YEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQK 232 (448)
T ss_dssp HHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHH
T ss_pred HhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHH
Confidence 37787777766544442222221 1111 2356999999999987554433210 02234555542 22221
Q ss_pred hHHhcCc---ccccccCCCCCCCCCCcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 295 VIYDRGL---IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 295 ~~~~rg~---~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
.+...|. |..++...+.+. .|.-.|+|++--.=+.+ +.+.+...|.-.+|.|||||.+|=+
T Consensus 233 ~v~~n~w~~~V~vi~~d~r~v~-lpekvDIIVSElLGsfg-~nEl~pE~Lda~~rfLkp~Gi~IP~ 296 (448)
T PF05185_consen 233 RVNANGWGDKVTVIHGDMREVE-LPEKVDIIVSELLGSFG-DNELSPECLDAADRFLKPDGIMIPS 296 (448)
T ss_dssp HHHHTTTTTTEEEEES-TTTSC-HSS-EEEEEE---BTTB-TTTSHHHHHHHGGGGEEEEEEEESS
T ss_pred HHHhcCCCCeEEEEeCcccCCC-CCCceeEEEEeccCCcc-ccccCHHHHHHHHhhcCCCCEEeCc
Confidence 2233343 788887665543 36899999985322222 3445677899999999999988743
No 345
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.0004 Score=63.84 Aligned_cols=113 Identities=18% Similarity=0.164 Sum_probs=68.3
Q ss_pred cccCCCCcceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc----Cccccc----ccCCCCCCCCCC
Q 015704 248 LHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----GLIGVM----HDWCEPFDTYPR 317 (402)
Q Consensus 248 ~~~~~~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r----g~~~~~----~~~~~~~~~~~~ 317 (402)
.++..|. .|||+|.|+|.++++|+.. |. ...|+..+ -+...+.|.+. |+...+ -|.++. .+++
T Consensus 90 ~gi~pg~--rVlEAGtGSG~lt~~La~~vg~---~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~--~~~~ 162 (256)
T COG2519 90 LGISPGS--RVLEAGTGSGALTAYLARAVGP---EGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREG--IDEE 162 (256)
T ss_pred cCCCCCC--EEEEcccCchHHHHHHHHhhCC---CceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccc--cccc
Confidence 3455443 3999999999999999942 21 11344443 23333333322 442211 122221 1347
Q ss_pred cccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcCc
Q 015704 318 TYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGW 375 (402)
Q Consensus 318 sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~w 375 (402)
.||.|+.. -.+|-.+|..++.+|||||.+++=.+. ++.++.-+.++..+|
T Consensus 163 ~vDav~LD--------mp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 163 DVDAVFLD--------LPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred ccCEEEEc--------CCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 99999988 557889999999999999999997664 333333333344455
No 346
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.54 E-value=0.00016 Score=72.15 Aligned_cols=120 Identities=18% Similarity=0.216 Sum_probs=67.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc----cccccc-CCCCCCCC---CCcccEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL----IGVMHD-WCEPFDTY---PRTYDLL 322 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~----~~~~~~-~~~~~~~~---~~sfD~v 322 (402)
++|||+|||+|+|+.+.+..|+ ..|+.+| ++.+++.+.+ .|+ +..++. ..+.+..+ ..+||+|
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga----~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGC----SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCC----CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 4699999999999988766654 1455555 3455544332 233 112221 11111112 2489999
Q ss_pred EEcccccccccc-------CCHHHHHHHhhhhccCCcEEEEEeC------hhhHHHHHHHHHhcCceEEEe
Q 015704 323 HAAGLFSVESKR-------CNMSTIMLEMDRMLRPGGHVYIRDS------IDVMDELQEIGKAMGWHVTLR 380 (402)
Q Consensus 323 ~~~~~~~~~~~~-------~~~~~~l~e~~RvLrpgG~~~~~~~------~~~~~~~~~~~~~~~w~~~~~ 380 (402)
++.-=.- ...+ .+...++.-..++|||||.+++... .+..+.+.+.+..-..++.+.
T Consensus 298 ilDPP~f-~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l 367 (396)
T PRK15128 298 VMDPPKF-VENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_pred EECCCCC-CCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 9872110 0001 1234556667899999999997532 234555555555555555443
No 347
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.54 E-value=0.0002 Score=64.32 Aligned_cols=86 Identities=16% Similarity=0.233 Sum_probs=59.5
Q ss_pred CeEEEECCccchhHHHHccC-CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC---CCCCeeEEEecCccccc
Q 015704 12 RVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY---PSQAFDLIHCSRCRINW 87 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~-~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~---~~~sfDlI~s~~~~~~~ 87 (402)
-++|||||=+......-... .|+.+|+.+... .+...|.-..|. +.++||+|.++.+ +.+
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~~~---------------~I~qqDFm~rplp~~~~e~FdvIs~SLV-LNf 116 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQHP---------------GILQQDFMERPLPKNESEKFDVISLSLV-LNF 116 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCCCCC---------------CceeeccccCCCCCCcccceeEEEEEEE-Eee
Confidence 58999998866433222221 577888776321 133345445554 3678999999866 777
Q ss_pred ccCh---HHHHHHHHHhcCCCeE-----EEEEeC
Q 015704 88 TRDD---GILLLEVNRMLRAGGY-----FAWAAQ 113 (402)
Q Consensus 88 ~~d~---~~~l~e~~r~LkpgG~-----li~~~~ 113 (402)
.+++ ...++.+.+.|+|+|. |++..|
T Consensus 117 VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP 150 (219)
T PF11968_consen 117 VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLP 150 (219)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeC
Confidence 7676 4789999999999999 888864
No 348
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.53 E-value=0.00026 Score=62.84 Aligned_cols=101 Identities=22% Similarity=0.224 Sum_probs=64.1
Q ss_pred CCCeEEEECCccchhHHHHcc--C--C---------ceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCC
Q 015704 10 LLRVVMDAGCGVASFGAYLLP--R--N---------VITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQA 74 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~--~--~---------v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~s 74 (402)
++..+||.-||+|.+....+. . . +.|.|+++..+..+. +.+...+.. ..+...|...+++.+++
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~-~N~~~ag~~~~i~~~~~D~~~l~~~~~~ 106 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAR-ENLKAAGVEDYIDFIQWDARELPLPDGS 106 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHH-HHHHHTT-CGGEEEEE--GGGGGGTTSB
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHH-HHHHhcccCCceEEEecchhhcccccCC
Confidence 567999999999987744322 2 3 559999998886665 444455543 34566688889977889
Q ss_pred eeEEEecCcccccccC---h----HHHHHHHHHhcCCCeEEEEE
Q 015704 75 FDLIHCSRCRINWTRD---D----GILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 75 fDlI~s~~~~~~~~~d---~----~~~l~e~~r~LkpgG~li~~ 111 (402)
+|.|+++..+-.-..+ . ..+++++.++|++...++++
T Consensus 107 ~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 107 VDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp SCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred CCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 9999998553322211 1 36788999999994444444
No 349
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.53 E-value=0.0007 Score=60.19 Aligned_cols=140 Identities=21% Similarity=0.323 Sum_probs=81.7
Q ss_pred HhhHHHHHHHHHHHHhcccCCCCcceEEeccccchH--HHHHHhhcCCCceEEEeccCCC-CCChh-hHHhcCc--cccc
Q 015704 232 AESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGG--FAAALIEQKFDCWVMNVVPVSG-FNTLP-VIYDRGL--IGVM 305 (402)
Q Consensus 232 ~~~~~w~~~~~~y~~~~~~~~~~~~~vLD~g~g~G~--~~~~l~~~~~~~~~~~v~~~~~-~~~~~-~~~~rg~--~~~~ 305 (402)
...+.|.+++..-...+..-.....+++|+|+|-|- +.-+++.. +..+.=|.+... -+.++ .+.+=|+ +..+
T Consensus 26 ~~~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p--~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~ 103 (184)
T PF02527_consen 26 DPEEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARP--DLQVTLVESVGKKVAFLKEVVRELGLSNVEVI 103 (184)
T ss_dssp SHHHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-T--TSEEEEEESSHHHHHHHHHHHHHHT-SSEEEE
T ss_pred CHHHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCC--CCcEEEEeCCchHHHHHHHHHHHhCCCCEEEE
Confidence 344566555553333333222211169999999984 33333333 223333333331 22333 3334466 6677
Q ss_pred ccCCCCCCCCCCcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC---hhhHHHHHHHHHhcCceEEEee
Q 015704 306 HDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS---IDVMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 306 ~~~~~~~~~~~~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~---~~~~~~~~~~~~~~~w~~~~~~ 381 (402)
|...|. ..++.+||+|.|.- ...+..++.-..+.|||||.+++--. .+.....+...+.+.++.....
T Consensus 104 ~~R~E~-~~~~~~fd~v~aRA-------v~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~v~ 174 (184)
T PF02527_consen 104 NGRAEE-PEYRESFDVVTARA-------VAPLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLSVP 174 (184)
T ss_dssp ES-HHH-TTTTT-EEEEEEES-------SSSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEEEE
T ss_pred Eeeecc-cccCCCccEEEeeh-------hcCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEeeec
Confidence 777777 44568999999983 34567888888899999999988743 3456666777777777766544
No 350
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.53 E-value=0.00025 Score=70.38 Aligned_cols=96 Identities=19% Similarity=0.142 Sum_probs=67.5
Q ss_pred CCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCCCCCCCCeeEEEecCccc
Q 015704 11 LRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
..+|||++||+|.++..++.. .|+++|+++..+..+. +.++.++.... +...|+..+....+.||+|+....
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~-~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIK-KNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC--
Confidence 358999999999999887643 5899999987765544 44444455433 555565443211457999997531
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
..+..++....+.+++||+++++.
T Consensus 135 ---Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 ---GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred ---CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 245678888788899999999983
No 351
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0002 Score=63.63 Aligned_cols=97 Identities=15% Similarity=0.143 Sum_probs=61.4
Q ss_pred CCCCCeEEEECCccchhHHHHccC----Cc--eEEeCCccchHHHHHHHHHHc----------CCCcEEEeccccCCCCC
Q 015704 8 IRLLRVVMDAGCGVASFGAYLLPR----NV--ITMSIAPKDVHENQIQFALER----------GAPAMVAAFATRRLPYP 71 (402)
Q Consensus 8 ~~~~~~VLDiGcG~G~~~~~L~~~----~v--~~vdi~~~~~~~a~~~~a~~~----------~~~~~~~~~d~~~lp~~ 71 (402)
-.++.+.||+|+|+|.++..++.. .. .|+|..+.-+..+....-+.- .....+..+|....--+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 457889999999999888766532 22 666666543322221111110 01223455665555556
Q ss_pred CCCeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 72 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 72 ~~sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
...||.|++.. ......+++...|++||.+++-
T Consensus 160 ~a~YDaIhvGA-------aa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 160 QAPYDAIHVGA-------AASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred cCCcceEEEcc-------CccccHHHHHHhhccCCeEEEe
Confidence 67899999863 3455667888899999999886
No 352
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.49 E-value=0.00043 Score=65.04 Aligned_cols=107 Identities=16% Similarity=0.267 Sum_probs=71.0
Q ss_pred CcceEEeccccch----HHHHHHhhcCCC--ceEEEeccCC-CCCChhhHH---------hcCc----------------
Q 015704 254 KLRNVLDMRAGFG----GFAAALIEQKFD--CWVMNVVPVS-GFNTLPVIY---------DRGL---------------- 301 (402)
Q Consensus 254 ~~~~vLD~g~g~G----~~~~~l~~~~~~--~~~~~v~~~~-~~~~~~~~~---------~rg~---------------- 301 (402)
+.=+|.-+||++| +.|-.|.+.+.. -+.+.|.++| +...++.|. .+|+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3445999999999 466666655421 2467788877 444443331 1233
Q ss_pred -----------ccccccCCCCCCCCCCcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeChhh
Q 015704 302 -----------IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDV 362 (402)
Q Consensus 302 -----------~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~ 362 (402)
.--.|+...+-+ ++.-||+|+|.||+-+.... .-..++..+...|+|||++++=.+..+
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYFd~~-~q~~il~~f~~~L~~gG~LflG~sE~~ 245 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYFDEE-TQERILRRFADSLKPGGLLFLGHSETI 245 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEeeCHH-HHHHHHHHHHHHhCCCCEEEEccCccc
Confidence 011244433322 56889999999999998742 346999999999999999999765533
No 353
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.48 E-value=0.00011 Score=64.89 Aligned_cols=99 Identities=21% Similarity=0.295 Sum_probs=57.0
Q ss_pred CCcceEEeccccchHHHHHHhhc--CCCceEEEeccCCCCCChh---hHHhc-C-----c-ccccccCCCCCC-C-CC-C
Q 015704 253 MKLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSGFNTLP---VIYDR-G-----L-IGVMHDWCEPFD-T-YP-R 317 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~~--~~~~~~~~v~~~~~~~~~~---~~~~r-g-----~-~~~~~~~~~~~~-~-~~-~ 317 (402)
.+-++||++|||.|-.+-.++.. +. .|+..|.+..++ ...++ + - .-...+|.++.. . .+ +
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~-----~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~ 118 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAA-----RVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPH 118 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-S-----EEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-S
T ss_pred cCCceEEEECCccchhHHHHHhccCCc-----eEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccc
Confidence 34457999999999777777766 44 444444222222 11111 1 1 223347766431 1 23 6
Q ss_pred cccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 318 TYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 318 sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
.||+|+++.++-.- ...+.++.=+.++|+|+|.+++..+
T Consensus 119 ~~D~IlasDv~Y~~---~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 119 SFDVILASDVLYDE---ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp SBSEEEEES--S-G---GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred cCCEEEEecccchH---HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 89999999998763 3467888889999999999888854
No 354
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.46 E-value=0.00025 Score=66.02 Aligned_cols=97 Identities=11% Similarity=0.061 Sum_probs=63.9
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccc-cCCCC------CCCCe
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFAT-RRLPY------PSQAF 75 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~-~~lp~------~~~sf 75 (402)
++++|||||+++|.-+..++.. .++++|.++.....+. +.-.+.+.. ..+..++. +.++- ..++|
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar-~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGL-PVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH-HHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 5679999999999887777643 6889999875554444 233334433 22344442 22221 13689
Q ss_pred eEEEecCcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 76 DLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 76 DlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
|+|+.- +........+..+.++|+|||.+++-
T Consensus 158 D~iFiD----adK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 158 DFIFVD----ADKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred cEEEec----CCHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 999953 22334467888889999999999886
No 355
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.44 E-value=0.00013 Score=66.17 Aligned_cols=102 Identities=20% Similarity=0.196 Sum_probs=57.0
Q ss_pred HHHHhcccCCCCcceEEeccccchHHHHHHhhc-CCCceEEEeccCCCCCChhhHHhc----Cc--ccccccCCCCCCCC
Q 015704 243 SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSGFNTLPVIYDR----GL--IGVMHDWCEPFDTY 315 (402)
Q Consensus 243 ~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~~~~~~~~~~~r----g~--~~~~~~~~~~~~~~ 315 (402)
...+.+.+..+. +|||+|||+|-+++-|+.. |....|+.|...+ ...+.|.++ |+ +..++.-.. ..+
T Consensus 63 ~~l~~L~l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~--~l~~~A~~~l~~~~~~nv~~~~gdg~--~g~ 136 (209)
T PF01135_consen 63 RMLEALDLKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVVSVERDP--ELAERARRNLARLGIDNVEVVVGDGS--EGW 136 (209)
T ss_dssp HHHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBH--HHHHHHHHHHHHHTTHSEEEEES-GG--GTT
T ss_pred HHHHHHhcCCCC--EEEEecCCCcHHHHHHHHhcCccceEEEECccH--HHHHHHHHHHHHhccCceeEEEcchh--hcc
Confidence 344455555553 5999999999999999876 3211344444332 233333332 33 334442221 234
Q ss_pred C--CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 316 P--RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 316 ~--~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
| ..||.|++.......+ .++.+.|||||.+++--.
T Consensus 137 ~~~apfD~I~v~~a~~~ip---------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 137 PEEAPFDRIIVTAAVPEIP---------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GGG-SEEEEEESSBBSS-----------HHHHHTEEEEEEEEEEES
T ss_pred ccCCCcCEEEEeeccchHH---------HHHHHhcCCCcEEEEEEc
Confidence 4 5899999985554332 345667999999998543
No 356
>PRK04148 hypothetical protein; Provisional
Probab=97.44 E-value=0.00048 Score=57.62 Aligned_cols=91 Identities=18% Similarity=0.117 Sum_probs=59.6
Q ss_pred CCCeEEEECCccch-hHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCC-CCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVAS-FGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP-SQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~-~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~-~~sfDlI~s~~~~~ 85 (402)
++.+|||+|||+|. ++..|.+. .|+++|+++.. .+.+++.+. .....|..+-++. -+.+|+|++...
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~a-----V~~a~~~~~--~~v~dDlf~p~~~~y~~a~liysirp-- 86 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKA-----VEKAKKLGL--NAFVDDLFNPNLEIYKNAKLIYSIRP-- 86 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHH-----HHHHHHhCC--eEEECcCCCCCHHHHhcCCEEEEeCC--
Confidence 45789999999995 88888775 78899988753 345555543 3444454333322 357999998654
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+.+....+.++++.+ |.-+++.+.
T Consensus 87 --p~el~~~~~~la~~~--~~~~~i~~l 110 (134)
T PRK04148 87 --PRDLQPFILELAKKI--NVPLIIKPL 110 (134)
T ss_pred --CHHHHHHHHHHHHHc--CCCEEEEcC
Confidence 335566677777665 455777643
No 357
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.43 E-value=0.086 Score=51.07 Aligned_cols=90 Identities=17% Similarity=0.155 Sum_probs=59.1
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcCcccccccCCCCCCCCCCcccEEEEccccccccccC
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRC 335 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg~~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~~~~~ 335 (402)
..+||+||++|||+-.|+++|. .|+++|...+-+...+.+.|..+-...-.+.+-++.+|+|+|.- .+
T Consensus 213 ~~vlDLGAsPGGWT~~L~~rG~-----~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDm-------ve 280 (357)
T PRK11760 213 MRAVDLGAAPGGWTYQLVRRGM-----FVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDM-------VE 280 (357)
T ss_pred CEEEEeCCCCcHHHHHHHHcCC-----EEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEec-------cc
Confidence 3599999999999999999997 45555533333333444443333221111111136899999983 35
Q ss_pred CHHHHHHHhhhhccCC--cEEEEE
Q 015704 336 NMSTIMLEMDRMLRPG--GHVYIR 357 (402)
Q Consensus 336 ~~~~~l~e~~RvLrpg--G~~~~~ 357 (402)
.|..++.=|.+.|..| ..+|+.
T Consensus 281 ~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 281 KPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred CHHHHHHHHHHHHhcCcccEEEEE
Confidence 5778888889999887 467777
No 358
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.43 E-value=0.0021 Score=60.42 Aligned_cols=63 Identities=16% Similarity=0.397 Sum_probs=47.9
Q ss_pred CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEE--------eC-------hh-hHHHHHHHHHhcCceEEEe
Q 015704 317 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR--------DS-------ID-VMDELQEIGKAMGWHVTLR 380 (402)
Q Consensus 317 ~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~--------~~-------~~-~~~~~~~~~~~~~w~~~~~ 380 (402)
++||+|.+.-++--. .++.+.|..|.++|||||++|=- +. .+ ..+.+..+++++.|++...
T Consensus 164 ~~~d~VvT~FFIDTA---~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~ 240 (270)
T PF07942_consen 164 GSFDVVVTCFFIDTA---ENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKE 240 (270)
T ss_pred CcccEEEEEEEeech---HHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEE
Confidence 389999888554443 36889999999999999976633 21 11 2789999999999999865
Q ss_pred ec
Q 015704 381 ET 382 (402)
Q Consensus 381 ~~ 382 (402)
+.
T Consensus 241 ~~ 242 (270)
T PF07942_consen 241 ES 242 (270)
T ss_pred EE
Confidence 54
No 359
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.43 E-value=0.00034 Score=69.81 Aligned_cols=106 Identities=18% Similarity=0.301 Sum_probs=78.4
Q ss_pred cCCCCC-eEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecC
Q 015704 7 WIRLLR-VVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 7 ~~~~~~-~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
+-.+.. ++|-+|||.-.+...+.+. .++.+|+|+..+.......+++ .....+...|+..+.|++++||+|+.-.
T Consensus 44 ~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~-~~~~~~~~~d~~~l~fedESFdiVIdkG 122 (482)
T KOG2352|consen 44 YLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE-RPEMQMVEMDMDQLVFEDESFDIVIDKG 122 (482)
T ss_pred hhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC-CcceEEEEecchhccCCCcceeEEEecC
Confidence 334445 8999999999998888765 7888899987775554444422 2233466678899999999999999876
Q ss_pred cccccccCh---------HHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRINWTRDD---------GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~~~d~---------~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.+.++..+. ...+.+++|+|++||.++..+.
T Consensus 123 tlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 123 TLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 656554442 3457899999999999888765
No 360
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.42 E-value=0.00025 Score=64.51 Aligned_cols=135 Identities=13% Similarity=0.169 Sum_probs=82.2
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHH----hcCc---ccccc--cCCCCCCCC-CCcccEE
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIY----DRGL---IGVMH--DWCEPFDTY-PRTYDLL 322 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~----~rg~---~~~~~--~~~~~~~~~-~~sfD~v 322 (402)
..++||.+|.+.|--+-.|+..=. ...-++.+| .+++.+.|. +-|+ +..+. ++.+.+... ..+||+|
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~--~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALP--DDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCC--CCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 566799999999977777765411 022456665 344444443 3355 22333 444444433 4899999
Q ss_pred EEccccccccccCCHHHHHHHhhhhccCCcEEEEEe---------C-----hhhHHHHHHHHHhcCceEEEeecCCCCCC
Q 015704 323 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD---------S-----IDVMDELQEIGKAMGWHVTLRETAEGPHA 388 (402)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~---------~-----~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 388 (402)
+.. .++.+.+..+.+..++|||||.+++.+ + ......++.+..-+.|+-...-.- -| .
T Consensus 137 FID------adK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~-lP-~ 208 (219)
T COG4122 137 FID------ADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVL-LP-L 208 (219)
T ss_pred EEe------CChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEE-Ee-c
Confidence 987 335566899999999999999999873 1 123444666666666653222110 01 1
Q ss_pred ceEEEEEEec
Q 015704 389 SYRILTADKR 398 (402)
Q Consensus 389 ~~~~l~~~k~ 398 (402)
+..++++.|.
T Consensus 209 gDGl~v~~k~ 218 (219)
T COG4122 209 GDGLLLSRKR 218 (219)
T ss_pred CCceEEEeec
Confidence 2558888874
No 361
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.40 E-value=7e-05 Score=66.22 Aligned_cols=97 Identities=16% Similarity=0.202 Sum_probs=68.2
Q ss_pred cccCCCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecC
Q 015704 5 NTWIRLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 5 ~~~~~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
+.++..+.++||+|+|.|.++..++.. .|.+.++|. .|+...++.+....... +-.+ .+-+||+|.|.+
T Consensus 107 p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~-----tMr~rL~kk~ynVl~~~-ew~~---t~~k~dli~clN 177 (288)
T KOG3987|consen 107 PAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSW-----TMRDRLKKKNYNVLTEI-EWLQ---TDVKLDLILCLN 177 (288)
T ss_pred CccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhH-----HHHHHHhhcCCceeeeh-hhhh---cCceeehHHHHH
Confidence 345667789999999999999988876 566665554 44455555544332211 1111 234699999876
Q ss_pred cccccccChHHHHHHHHHhcCC-CeEEEEE
Q 015704 83 CRINWTRDDGILLLEVNRMLRA-GGYFAWA 111 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~Lkp-gG~li~~ 111 (402)
. +.-+.++-++++.++.+|+| +|..+++
T Consensus 178 l-LDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 178 L-LDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred H-HHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 5 55556889999999999999 8988887
No 362
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.40 E-value=0.00045 Score=66.30 Aligned_cols=95 Identities=20% Similarity=0.222 Sum_probs=65.9
Q ss_pred CCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccc-cCCCCCCCCeeEEEecCccccc
Q 015704 11 LRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT-RRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~-~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
....+|+|.|.|+.+..+... .+.++++....+.++....+ .+ .....+|. .+.| +-|+|+.-.+++||
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~g--V~~v~gdmfq~~P----~~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PG--VEHVAGDMFQDTP----KGDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CC--cceecccccccCC----CcCeEEEEeecccC
Confidence 468999999999999988875 56566665544333322221 22 22333342 3343 34699999999999
Q ss_pred ccC-hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 88 TRD-DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 88 ~~d-~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.++ ..++|++++..|+|||.+++...
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 854 47999999999999999999853
No 363
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00051 Score=61.68 Aligned_cols=99 Identities=22% Similarity=0.239 Sum_probs=62.3
Q ss_pred HHHHhcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCCC-CCChhhHHhc----Cc--ccccccCCCCCCCC
Q 015704 243 SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDTY 315 (402)
Q Consensus 243 ~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~-~~~~~~~~~r----g~--~~~~~~~~~~~~~~ 315 (402)
.+.+.+....+ -+||+||||+|-.+|-|++..- .|..++. +...+.|..+ |+ +.+.|.- --.-|
T Consensus 63 ~m~~~L~~~~g--~~VLEIGtGsGY~aAvla~l~~-----~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gD--G~~G~ 133 (209)
T COG2518 63 RMLQLLELKPG--DRVLEIGTGSGYQAAVLARLVG-----RVVSIERIEELAEQARRNLETLGYENVTVRHGD--GSKGW 133 (209)
T ss_pred HHHHHhCCCCC--CeEEEECCCchHHHHHHHHHhC-----eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECC--cccCC
Confidence 55555565555 4599999999999999998854 4444442 2223333222 33 4444421 11336
Q ss_pred C--CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 316 P--RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 316 ~--~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
| .-||.|+..-....+++ . +.+-|||||.+++=..
T Consensus 134 ~~~aPyD~I~Vtaaa~~vP~------~---Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 134 PEEAPYDRIIVTAAAPEVPE------A---LLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCCcCEEEEeeccCCCCH------H---HHHhcccCCEEEEEEc
Confidence 6 58999999866666552 2 3457999999998644
No 364
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.36 E-value=2.6e-05 Score=65.84 Aligned_cols=46 Identities=22% Similarity=0.358 Sum_probs=39.9
Q ss_pred CCCC-CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 313 DTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 313 ~~~~-~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
++|. +|.|+|.|.+|++|+.-. .-..+|+|-.|+|||||++-|.-+
T Consensus 41 ~~F~dns~d~iyaeHvlEHlt~~-Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 41 SMFEDNSVDAIYAEHVLEHLTYD-EGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred ccCCCcchHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCcCcEEEEEcC
Confidence 5565 999999999999999854 346999999999999999999943
No 365
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.34 E-value=0.001 Score=62.06 Aligned_cols=103 Identities=17% Similarity=0.123 Sum_probs=64.1
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHc----CCCcEEEeccccC-CCCCCC-CeeEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER----GAPAMVAAFATRR-LPYPSQ-AFDLI 78 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~----~~~~~~~~~d~~~-lp~~~~-sfDlI 78 (402)
.++++||-||-|.|..+..+.+. .++.+|+++..+..+..-+.... .....+...|... +.-..+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 36889999999999999999875 58888888765544432222211 1123344444211 112234 89999
Q ss_pred EecCcccccccC----hHHHHHHHHHhcCCCeEEEEEe
Q 015704 79 HCSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 79 ~s~~~~~~~~~d----~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+.-.. -..... -..+++.+.+.|+|||.+++..
T Consensus 155 i~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 96432 222211 1689999999999999999975
No 366
>PLN02672 methionine S-methyltransferase
Probab=97.34 E-value=0.00051 Score=75.83 Aligned_cols=120 Identities=14% Similarity=0.151 Sum_probs=72.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc-------------------Cc---ccccc-cCCCC
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR-------------------GL---IGVMH-DWCEP 311 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r-------------------g~---~~~~~-~~~~~ 311 (402)
..|||+|||+|.++-.|+++... ..|+++| ++.+++.|.+. ++ +..++ ++.+.
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~---~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~ 196 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLP---SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY 196 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh
Confidence 35999999999999999987421 2566666 45555444221 11 23333 33322
Q ss_pred CCCCCCcccEEEEcc--------------cccccc--------ccCC-------------HHHHHHHhhhhccCCcEEEE
Q 015704 312 FDTYPRTYDLLHAAG--------------LFSVES--------KRCN-------------MSTIMLEMDRMLRPGGHVYI 356 (402)
Q Consensus 312 ~~~~~~sfD~v~~~~--------------~~~~~~--------~~~~-------------~~~~l~e~~RvLrpgG~~~~ 356 (402)
+......||+|+|.- |.+|-+ +.+. +..++.+..++|||||++++
T Consensus 197 ~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 197 CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 211012699999852 111110 0111 14788889999999999999
Q ss_pred EeChhhHHHHH-HHHHhcCceEE
Q 015704 357 RDSIDVMDELQ-EIGKAMGWHVT 378 (402)
Q Consensus 357 ~~~~~~~~~~~-~~~~~~~w~~~ 378 (402)
--....-+.+. +++++-.|+..
T Consensus 277 EiG~~q~~~v~~~l~~~~gf~~~ 299 (1082)
T PLN02672 277 NMGGRPGQAVCERLFERRGFRIT 299 (1082)
T ss_pred EECccHHHHHHHHHHHHCCCCee
Confidence 87666677777 57777666653
No 367
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.34 E-value=0.00017 Score=65.24 Aligned_cols=133 Identities=18% Similarity=0.161 Sum_probs=75.1
Q ss_pred CcceEEeccccchHHHHHHhhc-CCCceEEEeccCCC--CCChhhHHhcCc---ccccccCC-CCCCC----C-CCcccE
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG--FNTLPVIYDRGL---IGVMHDWC-EPFDT----Y-PRTYDL 321 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~~--~~~~~~~~~rg~---~~~~~~~~-~~~~~----~-~~sfD~ 321 (402)
+.++||++||++|.-+.+|+.. +.+..+..+..... ....+.....|+ |..++.-+ +.++. . +..||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 5667999999999988888853 11123333333221 112233344465 33443221 11121 2 257999
Q ss_pred EEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh------------hhHHHHHHHHH----hcCceEEEeecCCC
Q 015704 322 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI------------DVMDELQEIGK----AMGWHVTLRETAEG 385 (402)
Q Consensus 322 v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~------------~~~~~~~~~~~----~~~w~~~~~~~~~~ 385 (402)
|+... ++.+....+..+.+.|||||.+++.+-. .....|+++.+ .=+....+-...
T Consensus 125 VFiDa------~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpig-- 196 (205)
T PF01596_consen 125 VFIDA------DKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLPIG-- 196 (205)
T ss_dssp EEEES------TGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECST--
T ss_pred EEEcc------cccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEeC--
Confidence 99983 3445678899999999999999998421 11222444433 345555555443
Q ss_pred CCCceEEEEEEec
Q 015704 386 PHASYRILTADKR 398 (402)
Q Consensus 386 ~~~~~~~l~~~k~ 398 (402)
..+++++|.
T Consensus 197 ----dGl~l~~K~ 205 (205)
T PF01596_consen 197 ----DGLTLARKR 205 (205)
T ss_dssp ----TEEEEEEE-
T ss_pred ----CeeEEEEEC
Confidence 448888874
No 368
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.32 E-value=0.0019 Score=59.83 Aligned_cols=97 Identities=24% Similarity=0.350 Sum_probs=57.8
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc-------CcccccccC--CCCCCCCC---CcccEEE
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR-------GLIGVMHDW--CEPFDTYP---RTYDLLH 323 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r-------g~~~~~~~~--~~~~~~~~---~sfD~v~ 323 (402)
.+||+|||+|.++-.|+..=. ..-|+++| ++.+...|.+. |.+.++|.. .+.+.++| ..+|++.
T Consensus 151 ~ildlgtGSGaIslsll~~L~---~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLP---QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred eEEEecCCccHHHHHHHhcCC---CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 599999999999998876511 22445555 34444333332 446666542 23334454 6999999
Q ss_pred EccccccccccCCHH--------------------------HHHHHhhhhccCCcEEEEEeC
Q 015704 324 AAGLFSVESKRCNMS--------------------------TIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 324 ~~~~~~~~~~~~~~~--------------------------~~l~e~~RvLrpgG~~~~~~~ 359 (402)
|.- -|+.+. |++ .+..=.-|.|+|||.+.+.-.
T Consensus 228 sNP--PYI~~d-D~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 228 SNP--PYIRKD-DNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred cCC--Cccccc-chhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 862 111111 111 333344599999999999844
No 369
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.31 E-value=0.00062 Score=61.89 Aligned_cols=42 Identities=12% Similarity=0.309 Sum_probs=33.2
Q ss_pred CcccEEEEccccc--cccc-cCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 317 RTYDLLHAAGLFS--VESK-RCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 317 ~sfD~v~~~~~~~--~~~~-~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+-||+|.|-.+=. ||.+ ...+...+..+.|.|.|||++|+--
T Consensus 165 ~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 165 PEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred ccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 6899999976643 5532 2357899999999999999999974
No 370
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.28 E-value=0.00038 Score=62.75 Aligned_cols=124 Identities=13% Similarity=0.187 Sum_probs=64.3
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc--ccccccCCCCCCCCC-CcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMHDWCEPFDTYP-RTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~~~~~~~~~~~-~sfD~v~~~~~~ 328 (402)
+|||+|||+|.++..++.+++ ..|+.+| ++..+..+.+ .|+ +..++.-...+...+ .+||+|++.-=+
T Consensus 56 ~vLDl~~GsG~l~l~~lsr~a----~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 56 RCLDCFAGSGALGLEALSRYA----AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred EEEEcCCCccHHHHHHHHcCC----CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 599999999999987666653 1455555 2333332222 132 223322111111112 579999998322
Q ss_pred ccccccCC-HHHHHHHhh--hhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEe
Q 015704 329 SVESKRCN-MSTIMLEMD--RMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 397 (402)
Q Consensus 329 ~~~~~~~~-~~~~l~e~~--RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 397 (402)
+.. .+.++.-+. .+|+|+|.++++-.... .+..... .|+... ...+| .-++.+.+|
T Consensus 132 -----~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~--~~~~~~~--~~~~~~-~k~yG---~s~~~~~~~ 190 (199)
T PRK10909 132 -----RKGLLEETINLLEDNGWLADEALIYVESEVEN--GLPTVPA--NWQLHR-EKVAG---QVAYRLYIR 190 (199)
T ss_pred -----CCChHHHHHHHHHHCCCcCCCcEEEEEecCCC--CcccCCC--ccEEEE-EecCC---CEEEEEEEE
Confidence 122 234444333 35899999999865421 1111111 366543 33344 456666665
No 371
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.27 E-value=0.00095 Score=62.56 Aligned_cols=126 Identities=16% Similarity=0.224 Sum_probs=79.2
Q ss_pred CCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CC----CChhhHHhcCcc---cccccCCCCCCCCC---CcccE
Q 015704 253 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GF----NTLPVIYDRGLI---GVMHDWCEPFDTYP---RTYDL 321 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~----~~~~~~~~rg~~---~~~~~~~~~~~~~~---~sfD~ 321 (402)
++--+||||.||.|.+--........ -..+|.=.| ++ .-.+.+.+||+- .+.+..|-+...|. -..++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~-~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPE-RPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCC-CCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 44445999999999876665444221 122333333 32 233688899992 33333222222232 35799
Q ss_pred EEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh--hhHHHHHHHHHh----cCceEEE
Q 015704 322 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI--DVMDELQEIGKA----MGWHVTL 379 (402)
Q Consensus 322 v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~--~~~~~~~~~~~~----~~w~~~~ 379 (402)
++.+.+++..+|...+...|.=+.+.|.|||++|.+-.. -.++-|...+.+ -.|-..-
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRr 276 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRR 276 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEe
Confidence 999999999998766677899999999999999999632 124444444433 3565443
No 372
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.22 E-value=0.00086 Score=63.57 Aligned_cols=99 Identities=12% Similarity=0.156 Sum_probs=59.7
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCc--EEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~--~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
.++.|||+|||+|.++...++. .|.+++.+. |...+. +....+++.. .++.+.+++..+| ++.|+|++-.+-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~-~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYAR-KLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHH-HHHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 4678999999999776555443 788888764 332222 2222233322 2444567777766 689999976543
Q ss_pred cccccCh-HHHHHHHHHhcCCCeEEEEE
Q 015704 85 INWTRDD-GILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 85 ~~~~~d~-~~~l~e~~r~LkpgG~li~~ 111 (402)
.-+.++. -...-..++.|+|.|..+=+
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 3333221 12233456999999998654
No 373
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.22 E-value=0.00066 Score=63.32 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=33.7
Q ss_pred CeeEEEecCcccccccCh---HHHHHHHHHhcCCCeEEEEEe
Q 015704 74 AFDLIHCSRCRINWTRDD---GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 74 sfDlI~s~~~~~~~~~d~---~~~l~e~~r~LkpgG~li~~~ 112 (402)
.||+|++..++.....+. ..+++++.++|||||.|++..
T Consensus 158 ~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp SEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred chhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 599999999988887776 578999999999999999985
No 374
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.21 E-value=0.0028 Score=62.77 Aligned_cols=109 Identities=15% Similarity=0.067 Sum_probs=73.6
Q ss_pred CCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC---cEEEeccccC-C---CCCCCCeeEEEe
Q 015704 11 LRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRR-L---PYPSQAFDLIHC 80 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~---~~~~~~d~~~-l---p~~~~sfDlI~s 80 (402)
+++|||+-|=||.++.+.+.. .++.+|+|...+.-+. +...-+++. ..+.+.|+-. + .-...+||+|+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~-~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWAR-ENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHH-HHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 789999999999988777653 8999999987776555 333334443 2355555322 2 123458999997
Q ss_pred cCccccccc--------ChHHHHHHHHHhcCCCeEEEEEeCCCCCChH
Q 015704 81 SRCRINWTR--------DDGILLLEVNRMLRAGGYFAWAAQPVYKHEE 120 (402)
Q Consensus 81 ~~~~~~~~~--------d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~ 120 (402)
-...+.-.. +...++..+.++|+|||.+++++.....+..
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~ 344 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSD 344 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHH
Confidence 544333221 2346788899999999999999754444433
No 375
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.00037 Score=58.32 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=53.2
Q ss_pred CCCeEEEECCccchhHHHHc---cCCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLL---PRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~---~~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.+.+++|+|||.|.+..... ...++|+|+.+..+.-. .+.+.+..++..+.++++.++-+..+.||.++-+..
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf-~rNaeEfEvqidlLqcdildle~~~g~fDtaviNpp 123 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIF-TRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPP 123 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHH-hhchHHhhhhhheeeeeccchhccCCeEeeEEecCC
Confidence 67899999999997763332 23789999998766433 244555555556777788888777899999997755
No 376
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.19 E-value=0.00056 Score=61.57 Aligned_cols=94 Identities=17% Similarity=0.152 Sum_probs=61.2
Q ss_pred CCCCeEEEECCccchhHHHHcc--C--CceEEeCCccchHHHHHHHHHHcCCCc--EEEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP--R--NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~--~--~v~~vdi~~~~~~~a~~~~a~~~~~~~--~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
.++.+|+|+.||.|.++..++. . .|.++|++|...... .+.++.++... .....|...++. .+.||.|+++.
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L-~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l 177 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYL-KENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL 177 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHH-HHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHH-HHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC
Confidence 4678999999999999988876 3 699999999766443 35555555543 345667666554 68999999753
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEE
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFA 109 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li 109 (402)
. ..-..++..+.+++++||.+-
T Consensus 178 p-----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 P-----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp T-----SSGGGGHHHHHHHEEEEEEEE
T ss_pred h-----HHHHHHHHHHHHHhcCCcEEE
Confidence 2 233468888999999999875
No 377
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.18 E-value=0.00089 Score=65.92 Aligned_cols=96 Identities=16% Similarity=0.150 Sum_probs=62.1
Q ss_pred CeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCC-C-------C---C-----C
Q 015704 12 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRL-P-------Y---P-----S 72 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~l-p-------~---~-----~ 72 (402)
.+|||++||+|.++..+++. .++++|+++.++..+. +.+...+..+ .+...|+... + + . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~-~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ-YNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 47999999999999988765 7999999998886665 4455555543 3555554331 1 1 0 1
Q ss_pred CCeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 73 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 73 ~sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
..||+|+....--. -...+++.+. +|+++++++..|
T Consensus 278 ~~~d~v~lDPPR~G---~~~~~l~~l~---~~~~ivYvsC~p 313 (353)
T TIGR02143 278 YNCSTIFVDPPRAG---LDPDTCKLVQ---AYERILYISCNP 313 (353)
T ss_pred CCCCEEEECCCCCC---CcHHHHHHHH---cCCcEEEEEcCH
Confidence 23799997543111 1244555554 379999999643
No 378
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.16 E-value=0.0011 Score=58.80 Aligned_cols=104 Identities=23% Similarity=0.261 Sum_probs=56.0
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEe--ccccC-CCCCCCCeeEEEec
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAA--FATRR-LPYPSQAFDLIHCS 81 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~--~d~~~-lp~~~~sfDlI~s~ 81 (402)
.+.+|||+||++|.++..+.++ .++++|+.+...... ...-..+..... ..+.. ++-..+.||+|+|-
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~----~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D 98 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQN----VSFIQGDITNPENIKDIRKLLPESGEKFDLVLSD 98 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TT----EEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccccc----eeeeecccchhhHHHhhhhhccccccCcceeccc
Confidence 4579999999999999998876 588999987521100 000000011000 01111 11123689999974
Q ss_pred CcccccccC----h-------HHHHHHHHHhcCCCeEEEEEeCCCCCC
Q 015704 82 RCRINWTRD----D-------GILLLEVNRMLRAGGYFAWAAQPVYKH 118 (402)
Q Consensus 82 ~~~~~~~~d----~-------~~~l~e~~r~LkpgG~li~~~~~~~~~ 118 (402)
. ......+ . ...+.-+.+.|+|||.+++..+.....
T Consensus 99 ~-~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~ 145 (181)
T PF01728_consen 99 M-APNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI 145 (181)
T ss_dssp -------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS
T ss_pred c-ccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH
Confidence 3 2222221 1 234555667899999999987654443
No 379
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.16 E-value=0.001 Score=65.72 Aligned_cols=96 Identities=18% Similarity=0.190 Sum_probs=63.1
Q ss_pred CeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCC-C-CC--------------C
Q 015704 12 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRL-P-YP--------------S 72 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~l-p-~~--------------~ 72 (402)
.+|||++||+|.++..+++. .|+++|+++.++..+. +.+...+.. ..+...|+... + +. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~-~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQ-YNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHH-HHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 57999999999999988765 7999999998886655 445555554 33555554331 1 10 1
Q ss_pred CCeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 73 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 73 ~sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
.+||+|+..... ..-...+++.+.+ |+++++++..|
T Consensus 287 ~~~D~v~lDPPR---~G~~~~~l~~l~~---~~~ivyvSC~p 322 (362)
T PRK05031 287 YNFSTIFVDPPR---AGLDDETLKLVQA---YERILYISCNP 322 (362)
T ss_pred CCCCEEEECCCC---CCCcHHHHHHHHc---cCCEEEEEeCH
Confidence 258999976542 1112455555544 78999999754
No 380
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.13 E-value=0.0025 Score=61.61 Aligned_cols=115 Identities=11% Similarity=0.064 Sum_probs=67.5
Q ss_pred CCCeEEEECCccchhHHHHccC--------CceEEeCCccchHHHHHHHHHHcCCCcE-E--Eeccc----cCCCC--CC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--------NVITMSIAPKDVHENQIQFALERGAPAM-V--AAFAT----RRLPY--PS 72 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--------~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~--~~~d~----~~lp~--~~ 72 (402)
++..++|+|||+|.=+..|++. .++++|+|...+..+..+...+. .+.+ + ..+|. ..++- ..
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~-~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN-FSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc-CCCeEEEEEEecHHHHHhhccccccc
Confidence 4558999999999755544332 58899999988876665544222 2322 2 33332 11321 12
Q ss_pred CCeeEEEecC-cccccccC-hHHHHHHHHH-hcCCCeEEEEEeCCCCCChHHHHHHH
Q 015704 73 QAFDLIHCSR-CRINWTRD-DGILLLEVNR-MLRAGGYFAWAAQPVYKHEEAQEEHW 126 (402)
Q Consensus 73 ~sfDlI~s~~-~~~~~~~d-~~~~l~e~~r-~LkpgG~li~~~~~~~~~~~el~~~~ 126 (402)
....+++... ++-++.++ ...+|+++++ .|+|||.|++.. ........+..+|
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~-D~~k~~~~l~~AY 210 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL-DGCKDPDKVLRAY 210 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec-CCCCCHHHHHHHh
Confidence 3456666543 33333322 2578999999 999999999984 2333333344444
No 381
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.11 E-value=0.00073 Score=60.12 Aligned_cols=103 Identities=17% Similarity=0.083 Sum_probs=62.8
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCc--EEEecc-ccCCC---CCCCCeeEEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA--MVAAFA-TRRLP---YPSQAFDLIH 79 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~--~~~~~d-~~~lp---~~~~sfDlI~ 79 (402)
-.+.++||+-||+|.++...+++ .++.+|.+........ +....-+... .+...| ...++ ....+||+|+
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~-~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIK-KNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHH-HHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHH-HHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 35789999999999999887776 7888898876553332 3333334332 344444 22222 2467899999
Q ss_pred ecCcccccccChHHHHHHHH--HhcCCCeEEEEEeC
Q 015704 80 CSRCRINWTRDDGILLLEVN--RMLRAGGYFAWAAQ 113 (402)
Q Consensus 80 s~~~~~~~~~d~~~~l~e~~--r~LkpgG~li~~~~ 113 (402)
.-..+.. ......++..+. .+|+++|.+++.+.
T Consensus 120 lDPPY~~-~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 120 LDPPYAK-GLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp E--STTS-CHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred ECCCccc-chHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 8654222 211266777776 79999999999863
No 382
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.07 E-value=0.0042 Score=55.99 Aligned_cols=113 Identities=12% Similarity=0.205 Sum_probs=75.3
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcCc-ccccccCCCCCCCCC-CcccEEEEcccccccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGL-IGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESKR 334 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg~-~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~~~ 334 (402)
++|||||=....+ +...+ ..+|+++|-..+ +-|+ -.+... -++|.-+ +.||+|.||.||.++++.
T Consensus 54 rlLEVGals~~N~--~s~~~----~fdvt~IDLns~-----~~~I~qqDFm~--rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 54 RLLEVGALSTDNA--CSTSG----WFDVTRIDLNSQ-----HPGILQQDFME--RPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred eEEeecccCCCCc--ccccC----ceeeEEeecCCC-----CCCceeecccc--CCCCCCcccceeEEEEEEEEeeCCCH
Confidence 4999999754322 22222 235777773211 2222 111111 1233334 699999999999999987
Q ss_pred CCHHHHHHHhhhhccCCcE-----EEEEeC-------hhh-HHHHHHHHHhcCceEEEeec
Q 015704 335 CNMSTIMLEMDRMLRPGGH-----VYIRDS-------IDV-MDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 335 ~~~~~~l~e~~RvLrpgG~-----~~~~~~-------~~~-~~~~~~~~~~~~w~~~~~~~ 382 (402)
...-..|+-..+.|||+|. ++|--+ .+. .+.++.+..+|.+......+
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~ 181 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKK 181 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEe
Confidence 6667999999999999999 666533 233 56889999999999887654
No 383
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.05 E-value=0.0095 Score=54.10 Aligned_cols=151 Identities=20% Similarity=0.250 Sum_probs=85.8
Q ss_pred hhHHHHHHHHHHHHhcccCCCCcceEEeccccchHHHHHHh--hcCCCceEEEeccCCCC----CCh-hhHHhcCc--cc
Q 015704 233 ESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALI--EQKFDCWVMNVVPVSGF----NTL-PVIYDRGL--IG 303 (402)
Q Consensus 233 ~~~~w~~~~~~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~--~~~~~~~~~~v~~~~~~----~~~-~~~~~rg~--~~ 303 (402)
..+.|.+++-.-.......+....+++|+|+|.|-=+-=|| .... +|+-+|+. +.+ +.+.+=|+ +.
T Consensus 46 ~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~-----~vtLles~~Kk~~FL~~~~~eL~L~nv~ 120 (215)
T COG0357 46 PEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDL-----KVTLLESLGKKIAFLREVKKELGLENVE 120 (215)
T ss_pred HHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCC-----cEEEEccCchHHHHHHHHHHHhCCCCeE
Confidence 34566555543333333222214569999999995444433 3322 46666542 222 33444466 67
Q ss_pred ccccCCCCCCCCCCcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEE---EEeChhhHHHHHHHHHhcCceEEEe
Q 015704 304 VMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVY---IRDSIDVMDELQEIGKAMGWHVTLR 380 (402)
Q Consensus 304 ~~~~~~~~~~~~~~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~---~~~~~~~~~~~~~~~~~~~w~~~~~ 380 (402)
.+|...|.+..-+.-||+|.|.- .+.+..++.=....||+||.++ +.-..+.....+.......+.+..+
T Consensus 121 i~~~RaE~~~~~~~~~D~vtsRA-------va~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~ 193 (215)
T COG0357 121 IVHGRAEEFGQEKKQYDVVTSRA-------VASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKV 193 (215)
T ss_pred EehhhHhhcccccccCcEEEeeh-------ccchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEE
Confidence 77777776553221199999972 2333444444568999999874 3344566777888888888887776
Q ss_pred ecCCCC-CCceEEEEE
Q 015704 381 ETAEGP-HASYRILTA 395 (402)
Q Consensus 381 ~~~~~~-~~~~~~l~~ 395 (402)
..-.-+ ...++.|+.
T Consensus 194 ~~~~~p~~~~~r~l~i 209 (215)
T COG0357 194 FSLTVPELDGERHLVI 209 (215)
T ss_pred EEeecCCCCCceEEEE
Confidence 543322 223455543
No 384
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.03 E-value=0.0036 Score=60.22 Aligned_cols=99 Identities=16% Similarity=0.195 Sum_probs=66.6
Q ss_pred CCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHh--cCcccccccCCCCCCCCCCcccEEEEcccccc
Q 015704 253 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYD--RGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSV 330 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~--rg~~~~~~~~~~~~~~~~~sfD~v~~~~~~~~ 330 (402)
..+...+|+|.|.|.....+..+-..|..+|.... ..++.+.. -|+ -|--+.-|-.-| +=|+|++.-+++|
T Consensus 176 ~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp---~v~~~a~~~~~gV---~~v~gdmfq~~P-~~daI~mkWiLhd 248 (342)
T KOG3178|consen 176 KGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLP---FVLAAAPYLAPGV---EHVAGDMFQDTP-KGDAIWMKWILHD 248 (342)
T ss_pred ccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHH---HHHhhhhhhcCCc---ceecccccccCC-CcCeEEEEeeccc
Confidence 36778999999999999999885432223332222 12222211 332 222222222223 3369999999999
Q ss_pred ccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 331 ESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 331 ~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
+.|. +..++|+-...-|+|||.+++-|+
T Consensus 249 wtDe-dcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 249 WTDE-DCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred CChH-HHHHHHHHHHHhCCCCCEEEEEec
Confidence 9975 779999999999999999999976
No 385
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.99 E-value=0.0013 Score=63.59 Aligned_cols=103 Identities=18% Similarity=0.225 Sum_probs=60.4
Q ss_pred CCCeEEEECCccchhHHHHcc-----------CCceEEeCCccchHHHHHHHHHHcCC--C-cEEEeccccCCC-CC-CC
Q 015704 10 LLRVVMDAGCGVASFGAYLLP-----------RNVITMSIAPKDVHENQIQFALERGA--P-AMVAAFATRRLP-YP-SQ 73 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~-----------~~v~~vdi~~~~~~~a~~~~a~~~~~--~-~~~~~~d~~~lp-~~-~~ 73 (402)
++.+|+|.+||+|.+.....+ ..+.|+|+++....-+...... ++. . ..+...|.-..+ .. ..
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l-~~~~~~~~~i~~~d~l~~~~~~~~~ 124 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL-HGIDNSNINIIQGDSLENDKFIKNQ 124 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH-TTHHCBGCEEEES-TTTSHSCTST-
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh-hcccccccccccccccccccccccc
Confidence 455899999999988765543 2688899987665544433332 221 1 124444432222 22 47
Q ss_pred CeeEEEecCccccc--cc-----------------C-hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 74 AFDLIHCSRCRINW--TR-----------------D-DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 74 sfDlI~s~~~~~~~--~~-----------------d-~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.||+|+++..+-.. .. . .-.++..+.+.|++||.+++..+
T Consensus 125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 89999998665433 10 0 12578899999999999888754
No 386
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.92 E-value=0.0029 Score=60.16 Aligned_cols=103 Identities=17% Similarity=0.123 Sum_probs=65.0
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC---cEEEeccccC-CC--CCCCCeeEEEe
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRR-LP--YPSQAFDLIHC 80 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~---~~~~~~d~~~-lp--~~~~sfDlI~s 80 (402)
.+++|||+-|=||.++.+.+.. .++.+|.|...+..+..+ +.-++++ ..+...|+.. +. -..++||+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N-~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKEN-AALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHH-HHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4689999999999998876544 689999998877666643 3334432 2355555322 11 12468999998
Q ss_pred cCccccc-----ccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 81 SRCRINW-----TRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 81 ~~~~~~~-----~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
-...+.- ..+...++..+.++|+|||.+++++.
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 6543321 11235778889999999999998864
No 387
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.90 E-value=0.0041 Score=58.99 Aligned_cols=99 Identities=13% Similarity=0.075 Sum_probs=56.9
Q ss_pred CCCeEEEECCccchhHHHHcc-----CCceEEeCCccchHHHHHHHHHHcCC-CcE-EEec-cccCCCCCCCCeeEEEec
Q 015704 10 LLRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGA-PAM-VAAF-ATRRLPYPSQAFDLIHCS 81 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~-----~~v~~vdi~~~~~~~a~~~~a~~~~~-~~~-~~~~-d~~~lp~~~~sfDlI~s~ 81 (402)
.+.+|||+|||+|..+....+ ..++++|.++.++..+. ...+.... ... .... -.+..++. ..|+|+++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~-~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s 109 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAK-RLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIAS 109 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHH-HHHhcccccccchhhhhhhcccccCC--CCcEEEEe
Confidence 567999999999965544432 16778888877664433 22222111 111 0000 01122332 33999999
Q ss_pred CcccccccC-hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 82 RCRINWTRD-DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 82 ~~~~~~~~d-~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++..+... ...+++.+.+.+.+ .|++..+
T Consensus 110 ~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEp 140 (274)
T PF09243_consen 110 YVLNELPSAARAELVRSLWNKTAP--VLVLVEP 140 (274)
T ss_pred hhhhcCCchHHHHHHHHHHHhccC--cEEEEcC
Confidence 888877652 24566666666655 8887743
No 388
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.85 E-value=0.016 Score=52.05 Aligned_cols=99 Identities=14% Similarity=0.137 Sum_probs=63.6
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC--------CCCCCe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--------YPSQAF 75 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp--------~~~~sf 75 (402)
.++.+|+|+|+..|.+++.+++. .|+++|+.+.+.... ..+.+.|+..-+ +....+
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~-----------V~~iq~d~~~~~~~~~l~~~l~~~~~ 112 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPG-----------VIFLQGDITDEDTLEKLLEALGGAPV 112 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCC-----------ceEEeeeccCccHHHHHHHHcCCCCc
Confidence 45789999999999999988765 389999998654221 234444432221 234457
Q ss_pred eEEEecCc---ccccccCh-------HHHHHHHHHhcCCCeEEEEEeCCCCCC
Q 015704 76 DLIHCSRC---RINWTRDD-------GILLLEVNRMLRAGGYFAWAAQPVYKH 118 (402)
Q Consensus 76 DlI~s~~~---~~~~~~d~-------~~~l~e~~r~LkpgG~li~~~~~~~~~ 118 (402)
|+|+|-.. .-++..|. ..++.-+..+|+|||.+++..+-+...
T Consensus 113 DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~ 165 (205)
T COG0293 113 DVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDF 165 (205)
T ss_pred ceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCH
Confidence 99996321 12222221 245566778999999999997644433
No 389
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.83 E-value=0.0039 Score=64.76 Aligned_cols=77 Identities=17% Similarity=0.108 Sum_probs=39.9
Q ss_pred CCCeEEEECCccchhHHHHccC------------CceEEeCCccchHHHHHHHHHHcCCCcEEEecccc-C-C---CCCC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR------------NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR-R-L---PYPS 72 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~------------~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~-~-l---p~~~ 72 (402)
...+|||.|||+|.+...++.. .+.++|+++..+..+.............+...+.. . . +-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 3468999999999887666532 34555665544433322221111111122222211 0 0 1112
Q ss_pred CCeeEEEecCcccc
Q 015704 73 QAFDLIHCSRCRIN 86 (402)
Q Consensus 73 ~sfDlI~s~~~~~~ 86 (402)
+.||+|++|.....
T Consensus 111 ~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 111 DLFDIVITNPPYGR 124 (524)
T ss_pred CcccEEEeCCCccc
Confidence 57999999876553
No 390
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.83 E-value=0.031 Score=54.07 Aligned_cols=110 Identities=14% Similarity=0.117 Sum_probs=69.6
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEecc-ccCCCCCCCCeeEEEecCccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFA-TRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d-~~~lp~~~~sfDlI~s~~~~~ 85 (402)
.++.++||+||++|.++..+.++ .|+++|..+-+. ... ..........+ ....| +.+.+|.++|-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~------~L~-~~~~V~h~~~d~fr~~p-~~~~vDwvVcDmv-- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQ------SLM-DTGQVEHLRADGFKFRP-PRKNVDWLVCDMV-- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCH------hhh-CCCCEEEEeccCcccCC-CCCCCCEEEEecc--
Confidence 46789999999999999999987 689998554221 111 12223333333 33333 2578999997532
Q ss_pred ccccChHHHHHHHHHhcCCC--eEEEEEe-CCCCCChHHHHHHHHHHHh
Q 015704 86 NWTRDDGILLLEVNRMLRAG--GYFAWAA-QPVYKHEEAQEEHWKEMLD 131 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~Lkpg--G~li~~~-~~~~~~~~el~~~~~~~~~ 131 (402)
..|.+..+-+.+.|..| ..+++.- +|......+.++....+..
T Consensus 280 ---e~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~~ 325 (357)
T PRK11760 280 ---EKPARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIEE 325 (357)
T ss_pred ---cCHHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35778888888888766 3455542 4555555666666555544
No 391
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.83 E-value=0.0054 Score=58.23 Aligned_cols=122 Identities=17% Similarity=0.130 Sum_probs=75.9
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh--cCccccccc-CCCC----CCCCCCcccEEEEc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD--RGLIGVMHD-WCEP----FDTYPRTYDLLHAA 325 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~--rg~~~~~~~-~~~~----~~~~~~sfD~v~~~ 325 (402)
.-++|||+|||+|+-.-+..+. .+ ..-.++.+| +..+++++.. ++.....+. +... ..++ ...|+|.++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~-~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~DLvi~s 109 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREV-WP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF-PPDDLVIAS 109 (274)
T ss_pred CCceEEEecCChHHHHHHHHHH-hc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC-CCCcEEEEe
Confidence 4557999999999755544432 01 123555666 4555554322 111111111 1111 1122 234999999
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEeCh-----hhHHHHHHHHHhcCceEEEee
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-----DVMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-----~~~~~~~~~~~~~~w~~~~~~ 381 (402)
++|..+.+ .....++..+.+.+.+ ++||=|+- ..+..+++.+....+.+.++=
T Consensus 110 ~~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~APC 167 (274)
T PF09243_consen 110 YVLNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVVAPC 167 (274)
T ss_pred hhhhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceECCC
Confidence 99999987 6678888888887777 88888753 557788888877777777653
No 392
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.82 E-value=0.014 Score=53.36 Aligned_cols=117 Identities=21% Similarity=0.349 Sum_probs=78.0
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-cccc-ccCCCCCCC--CCCcccEEEEcccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVM-HDWCEPFDT--YPRTYDLLHAAGLFSV 330 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~~~-~~~~~~~~~--~~~sfD~v~~~~~~~~ 330 (402)
+.+||+|+-+|||+-.|.++|+. .|.++| ..+++.--..... +-.+ ......+.+ |..-.|++.|.-.|--
T Consensus 81 kv~LDiGsSTGGFTd~lLq~gAk----~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFIS 156 (245)
T COG1189 81 KVVLDIGSSTGGFTDVLLQRGAK----HVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSFIS 156 (245)
T ss_pred CEEEEecCCCccHHHHHHHcCCc----EEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEEEEeehhh
Confidence 34999999999999999999873 677777 5666654433333 1111 011111111 2235688888855543
Q ss_pred ccccCCHHHHHHHhhhhccCCcEEEEE-------------------eC---hhhHHHHHHHHHhcCceEEEeec
Q 015704 331 ESKRCNMSTIMLEMDRMLRPGGHVYIR-------------------DS---IDVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 331 ~~~~~~~~~~l~e~~RvLrpgG~~~~~-------------------~~---~~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
+ ..+|-.+..+|+|+|-+++- |+ ..++.++...+....|.+.--..
T Consensus 157 L------~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~ 224 (245)
T COG1189 157 L------KLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIK 224 (245)
T ss_pred H------HHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEc
Confidence 3 47899999999999988876 22 24577888899999999776443
No 393
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.78 E-value=0.0035 Score=55.33 Aligned_cols=102 Identities=19% Similarity=0.153 Sum_probs=62.5
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
.+++|||+|+|+|..+..-+.. .+++.|+.+.-. .+..-.+..++....+...|. + .++..||+++.+.+++.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~-~ai~lNa~angv~i~~~~~d~--~-g~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE-QAIRLNAAANGVSILFTHADL--I-GSPPAFDLLLAGDLFYN 154 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHH-HHhhcchhhccceeEEeeccc--c-CCCcceeEEEeeceecC
Confidence 5689999999999665444432 677888886433 333334445554444444332 2 25678999998876544
Q ss_pred cccChHHHHHHHHHhcCCCeEEEEEeCCCCC
Q 015704 87 WTRDDGILLLEVNRMLRAGGYFAWAAQPVYK 117 (402)
Q Consensus 87 ~~~d~~~~l~e~~r~LkpgG~li~~~~~~~~ 117 (402)
.. ...+++. +.+.|+..|..++..-|...
T Consensus 155 ~~-~a~~l~~-~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 155 HT-EADRLIP-WKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred ch-HHHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence 32 2355666 77777777766665434433
No 394
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.77 E-value=0.0075 Score=56.33 Aligned_cols=82 Identities=16% Similarity=0.220 Sum_probs=55.2
Q ss_pred CCcccEEEEccccccc-cccCCHHHHHHHhhhhccCCcEEEEEeC----------------hhhHHHHHHHHHhcCceEE
Q 015704 316 PRTYDLLHAAGLFSVE-SKRCNMSTIMLEMDRMLRPGGHVYIRDS----------------IDVMDELQEIGKAMGWHVT 378 (402)
Q Consensus 316 ~~sfD~v~~~~~~~~~-~~~~~~~~~l~e~~RvLrpgG~~~~~~~----------------~~~~~~~~~~~~~~~w~~~ 378 (402)
|..||+|.+.-.++.. .+......+|+.|-+.|||||++|+-.- .-..+-|++.+++-...+.
T Consensus 156 p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~ 235 (256)
T PF01234_consen 156 PPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIE 235 (256)
T ss_dssp -SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEE
T ss_pred ccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEE
Confidence 4569999999888874 3444556999999999999999999831 0114566677777777777
Q ss_pred EeecCCC--CCCceEEEEEEe
Q 015704 379 LRETAEG--PHASYRILTADK 397 (402)
Q Consensus 379 ~~~~~~~--~~~~~~~l~~~k 397 (402)
..+.... .....-+++|+|
T Consensus 236 ~~~~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 236 DLEKQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp EEEG-TTTB---EEEEEEEEE
T ss_pred ecccccCcCCCCcEEEEEEeC
Confidence 6664222 334466667776
No 395
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.72 E-value=0.004 Score=63.35 Aligned_cols=100 Identities=19% Similarity=0.245 Sum_probs=58.3
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCCh---hhHHhc-Cc--ccccccCCCCCC-CCCCcccEEE----E
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTL---PVIYDR-GL--IGVMHDWCEPFD-TYPRTYDLLH----A 324 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~---~~~~~r-g~--~~~~~~~~~~~~-~~~~sfD~v~----~ 324 (402)
.|||+.||+|+=+.+|++.-. -...|++.| +...+ ....+| |+ +...+.-...+. .+|.+||.|+ |
T Consensus 116 ~VLD~CAAPGgKTt~la~~l~--~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPC 193 (470)
T PRK11933 116 RVLDMAAAPGSKTTQIAALMN--NQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPC 193 (470)
T ss_pred EEEEeCCCccHHHHHHHHHcC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCC
Confidence 599999999998888887511 011455555 22333 333333 54 222222122222 3567899999 6
Q ss_pred ccc--cccccc------cCCH-------HHHHHHhhhhccCCcEEEEEe
Q 015704 325 AGL--FSVESK------RCNM-------STIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 325 ~~~--~~~~~~------~~~~-------~~~l~e~~RvLrpgG~~~~~~ 358 (402)
|.. |..-++ ..++ ..+|....+.|||||+++.+.
T Consensus 194 SG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 194 SGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred CCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 632 222110 0001 278888899999999999984
No 396
>PLN02823 spermine synthase
Probab=96.72 E-value=0.01 Score=57.91 Aligned_cols=100 Identities=14% Similarity=0.182 Sum_probs=56.6
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc----------ccccccCCCC-CCCCCCcccE
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL----------IGVMHDWCEP-FDTYPRTYDL 321 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~----------~~~~~~~~~~-~~~~~~sfD~ 321 (402)
..++||-+|+|.|+.+..+.+.. ++. .|+.+| .+..++.+.+.-- +..+.+-.-. +..-+++||+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~--~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVE--KVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCC--eEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccE
Confidence 45689999999999999888763 122 344444 3445555544310 1111110101 1111368999
Q ss_pred EEEcccccccc-ccCC---HHHHHH-HhhhhccCCcEEEEE
Q 015704 322 LHAAGLFSVES-KRCN---MSTIML-EMDRMLRPGGHVYIR 357 (402)
Q Consensus 322 v~~~~~~~~~~-~~~~---~~~~l~-e~~RvLrpgG~~~~~ 357 (402)
|++.. ..... ..+. -...+. .+.|.|+|||.+++.
T Consensus 180 Ii~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 180 IIGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EEecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 99872 11110 0000 025666 789999999999875
No 397
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.71 E-value=0.0085 Score=54.32 Aligned_cols=97 Identities=13% Similarity=0.077 Sum_probs=64.5
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcE--EEecc-ccCCC-----CCCCCee
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAM--VAAFA-TRRLP-----YPSQAFD 76 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~--~~~~d-~~~lp-----~~~~sfD 76 (402)
+++++||+|.=||.-+..++.. +|+++|++........ +..+..+.... +.... .+.++ .+.++||
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~-~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGL-ELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhH-HHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 5679999998888554444432 8999999886655442 33334443322 22222 22221 3468999
Q ss_pred EEEecCcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 77 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 77 lI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
+++. -+|..+-.....++.+++|+||.+++-
T Consensus 152 faFv----DadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 152 FAFV----DADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEEE----ccchHHHHHHHHHHHhhcccccEEEEe
Confidence 9994 556655578899999999999999987
No 398
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=96.71 E-value=0.0024 Score=60.10 Aligned_cols=62 Identities=13% Similarity=0.214 Sum_probs=41.1
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----CcccccccCCCCCCCCC-CcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GLIGVMHDWCEPFDTYP-RTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~~~~~~~~~~~~~~~~-~sfD~v~~~ 325 (402)
.+|||+|||+|.++..|++++. .|+++| ++.+++.+.++ +-+..++. ++..++ ..||.|+++
T Consensus 31 ~~VLEIG~G~G~lt~~L~~~~~-----~v~~vEid~~~~~~l~~~~~~~~~v~ii~~---D~~~~~~~~~d~Vv~N 98 (258)
T PRK14896 31 DPVLEIGPGKGALTDELAKRAK-----KVYAIELDPRLAEFLRDDEIAAGNVEIIEG---DALKVDLPEFNKVVSN 98 (258)
T ss_pred CeEEEEeCccCHHHHHHHHhCC-----EEEEEECCHHHHHHHHHHhccCCCEEEEEe---ccccCCchhceEEEEc
Confidence 4699999999999999999975 455555 34566555543 11333432 223344 468999887
No 399
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=96.64 E-value=0.0026 Score=60.36 Aligned_cols=64 Identities=17% Similarity=0.245 Sum_probs=41.3
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC---cccccccCCCCCCCCCC-cccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG---LIGVMHDWCEPFDTYPR-TYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg---~~~~~~~~~~~~~~~~~-sfD~v~~~ 325 (402)
..|||+|||+|.++..|++++. .|+++| ++.+++.+.++. -+..++.-...+ +++. .+|.|++.
T Consensus 44 ~~VLEiG~G~G~lt~~L~~~~~-----~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~-~~~~~~~~~vv~N 112 (272)
T PRK00274 44 DNVLEIGPGLGALTEPLLERAA-----KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKV-DLSELQPLKVVAN 112 (272)
T ss_pred CeEEEeCCCccHHHHHHHHhCC-----cEEEEECCHHHHHHHHHhhccCceEEEEChhhcC-CHHHcCcceEEEe
Confidence 3599999999999999999975 566666 466777766542 233333322222 2332 25778776
No 400
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.62 E-value=0.0095 Score=52.69 Aligned_cols=103 Identities=21% Similarity=0.155 Sum_probs=62.9
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcC--CCcEEEecccc-CCCCCC--CCeeEEEec
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERG--APAMVAAFATR-RLPYPS--QAFDLIHCS 81 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~--~~~~~~~~d~~-~lp~~~--~sfDlI~s~ 81 (402)
.+.++||+=+|+|.++...+++ .++.+|.+........ +..+.-+ ....+...|+. .++-.. ++||+|+.-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~-~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILK-ENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHH-HHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 5689999999999999888877 7888888875543332 2333333 23334444433 222222 259999976
Q ss_pred CcccccccChHHHHHH--HHHhcCCCeEEEEEeC
Q 015704 82 RCRINWTRDDGILLLE--VNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 82 ~~~~~~~~d~~~~l~e--~~r~LkpgG~li~~~~ 113 (402)
..+..-.-+....+.. -..+|+|+|.+++.+.
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 5533111112333333 4578999999999853
No 401
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.62 E-value=0.012 Score=58.03 Aligned_cols=110 Identities=13% Similarity=0.197 Sum_probs=63.9
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCC-------CC------
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDT-------YP------ 316 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~-------~~------ 316 (402)
.|||++||+|.|+-.|++... .|+++| ++.+++.+.+. |+ +..+....+.+.. ++
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~-----~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 274 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFR-----RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGID 274 (353)
T ss_pred cEEEEeccccHHHHHHHHhCC-----EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccc
Confidence 399999999999999988754 566665 45556544443 33 2222211111110 10
Q ss_pred ---CcccEEEEccccccccccCCH-HHHHHHhhhhccCCcEEEEEeChhh-HHHHHHHHHhcCceEEEeec
Q 015704 317 ---RTYDLLHAAGLFSVESKRCNM-STIMLEMDRMLRPGGHVYIRDSIDV-MDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 317 ---~sfD~v~~~~~~~~~~~~~~~-~~~l~e~~RvLrpgG~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~ 382 (402)
..||+|+.. +++.++ ..++.- +++|++.++++=+... .+-+..+.++ |++..-+-
T Consensus 275 ~~~~~~d~v~lD------PPR~G~~~~~l~~---l~~~~~ivYvsC~p~tlaRDl~~L~~~--Y~l~~v~~ 334 (353)
T TIGR02143 275 LKSYNCSTIFVD------PPRAGLDPDTCKL---VQAYERILYISCNPETLKANLEQLSET--HRVERFAL 334 (353)
T ss_pred cccCCCCEEEEC------CCCCCCcHHHHHH---HHcCCcEEEEEcCHHHHHHHHHHHhcC--cEEEEEEE
Confidence 127988887 445443 244443 4569999999965544 4445544444 88776543
No 402
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=96.62 E-value=0.0037 Score=58.14 Aligned_cols=120 Identities=21% Similarity=0.257 Sum_probs=67.0
Q ss_pred cccCCCCcceEEeccccchHHHHHHhhc-CCCceEEEeccCCC--CCChhhHHhcCc---ccccc-cCCCC-CC-CCCCc
Q 015704 248 LHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG--FNTLPVIYDRGL---IGVMH-DWCEP-FD-TYPRT 318 (402)
Q Consensus 248 ~~~~~~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~~--~~~~~~~~~rg~---~~~~~-~~~~~-~~-~~~~s 318 (402)
+.+..|.. ||+.|.|+|.++.+|+.. +....+....--+. ....+.....|+ +...| |.|+. |. ...+.
T Consensus 36 l~i~pG~~--VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~ 113 (247)
T PF08704_consen 36 LDIRPGSR--VLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESD 113 (247)
T ss_dssp TT--TT-E--EEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTS
T ss_pred cCCCCCCE--EEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCc
Confidence 34555543 999999999999999853 21123333222211 112222233355 44444 55532 21 12368
Q ss_pred ccEEEEccccccccccCCHHHHHHHhhhhc-cCCcEEEEEeCh-hhHHHHHHHHHhcCceE
Q 015704 319 YDLLHAAGLFSVESKRCNMSTIMLEMDRML-RPGGHVYIRDSI-DVMDELQEIGKAMGWHV 377 (402)
Q Consensus 319 fD~v~~~~~~~~~~~~~~~~~~l~e~~RvL-rpgG~~~~~~~~-~~~~~~~~~~~~~~w~~ 377 (402)
||.|+-. -.+|-.++..+.++| ||||.+.+=.+. ++..+.-..+++..|.-
T Consensus 114 ~DavfLD--------lp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~ 166 (247)
T PF08704_consen 114 FDAVFLD--------LPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTD 166 (247)
T ss_dssp EEEEEEE--------SSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEE
T ss_pred ccEEEEe--------CCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCee
Confidence 9999887 446779999999999 999999887664 33333344455556754
No 403
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.60 E-value=0.011 Score=53.63 Aligned_cols=120 Identities=21% Similarity=0.250 Sum_probs=74.6
Q ss_pred eEEeccccchHHHHHHhhc----CCCceEEEeccCCCCCChhhHHhcCc-ccccccCCCCCCCCC---CcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQ----KFDCWVMNVVPVSGFNTLPVIYDRGL-IGVMHDWCEPFDTYP---RTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~----~~~~~~~~v~~~~~~~~~~~~~~rg~-~~~~~~~~~~~~~~~---~sfD~v~~~~~~ 328 (402)
.||-+|+.+|+...++++- | -|+.+...|....+.+..|..|-- +..+-+-..+ ..|. ...|+|++.-
T Consensus 76 kVLYLGAasGTTVSHvSDIvg~~G-~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P-~~Y~~lv~~VDvI~~DV-- 151 (229)
T PF01269_consen 76 KVLYLGAASGTTVSHVSDIVGPDG-VVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHP-EKYRMLVEMVDVIFQDV-- 151 (229)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTTS-EEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSG-GGGTTTS--EEEEEEE---
T ss_pred EEEEecccCCCccchhhhccCCCC-cEEEEEecchhHHHHHHHhccCCceeeeeccCCCh-HHhhcccccccEEEecC--
Confidence 4999999999999998764 3 245555555444677788888854 6666554322 1132 5889999971
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeC----------hhhHHHHHHHHHhcCceEEEeecC
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDS----------IDVMDELQEIGKAMGWHVTLRETA 383 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~----------~~~~~~~~~~~~~~~w~~~~~~~~ 383 (402)
..+....-++.-...-|||||+++|.=+ .++...-.+.++.-..+...+-+.
T Consensus 152 ---aQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~L 213 (229)
T PF01269_consen 152 ---AQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITL 213 (229)
T ss_dssp ---SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-
T ss_pred ---CChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEecc
Confidence 1122345777888899999999999832 233333334455555666655443
No 404
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.60 E-value=0.0039 Score=58.11 Aligned_cols=76 Identities=16% Similarity=0.082 Sum_probs=51.8
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCC-CeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQ-AFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~-sfDlI~s~~~~~~ 86 (402)
++..|||||+|.|.+|..|+++ .|+++++++.....-. +... ......+..+|+...+++.- .++.|++|.. ++
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~-~~~~-~~~n~~vi~~DaLk~d~~~l~~~~~vVaNlP-Y~ 106 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLK-ERFA-PYDNLTVINGDALKFDFPSLAQPYKVVANLP-YN 106 (259)
T ss_pred CCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHH-Hhcc-cccceEEEeCchhcCcchhhcCCCEEEEcCC-Cc
Confidence 4679999999999999999987 7899999875442222 1111 12234466678777777643 6788998754 44
Q ss_pred cc
Q 015704 87 WT 88 (402)
Q Consensus 87 ~~ 88 (402)
..
T Consensus 107 Is 108 (259)
T COG0030 107 IS 108 (259)
T ss_pred cc
Confidence 44
No 405
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.54 E-value=0.0085 Score=60.38 Aligned_cols=99 Identities=22% Similarity=0.243 Sum_probs=69.0
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCCCCC---CCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLPYP---SQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~~lp~~---~~sfDlI~s~~~ 83 (402)
++.++||+=||.|.++..|+.+ .|+|+++++.++..+. +.|+.++..+. +..++.+..... ...+|.|+....
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~-~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPP 371 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQ-ENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPP 371 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHH-HHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCC
Confidence 4568999999999999999976 8999999998886665 66667776654 555665555422 357899995432
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
--- -...+++.+. .++|..++++|..
T Consensus 372 R~G---~~~~~lk~l~-~~~p~~IvYVSCN 397 (432)
T COG2265 372 RAG---ADREVLKQLA-KLKPKRIVYVSCN 397 (432)
T ss_pred CCC---CCHHHHHHHH-hcCCCcEEEEeCC
Confidence 100 0134555544 4578889999964
No 406
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.53 E-value=0.0047 Score=57.24 Aligned_cols=74 Identities=23% Similarity=0.292 Sum_probs=51.6
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC----cEEEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP----AMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~----~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
+++..|||+|.|||.++..|++. .|+++++++.++.+-... -+|.+ ..+..+|.-..++| .||.+++|.
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~kr---v~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsNl 131 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKR---VQGTPKSGKLQVLHGDFLKTDLP--RFDGCVSNL 131 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHH---hcCCCccceeeEEecccccCCCc--ccceeeccC
Confidence 46779999999999999999886 899999998776544321 12333 23555665555544 799999764
Q ss_pred cccccc
Q 015704 83 CRINWT 88 (402)
Q Consensus 83 ~~~~~~ 88 (402)
. .+..
T Consensus 132 P-yqIS 136 (315)
T KOG0820|consen 132 P-YQIS 136 (315)
T ss_pred C-cccc
Confidence 3 4444
No 407
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.51 E-value=0.017 Score=56.94 Aligned_cols=105 Identities=21% Similarity=0.276 Sum_probs=66.0
Q ss_pred CCCCCeEEEECCccchhHHHHccC------CceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCC---CCCCCeeE
Q 015704 8 IRLLRVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP---YPSQAFDL 77 (402)
Q Consensus 8 ~~~~~~VLDiGcG~G~~~~~L~~~------~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~lp---~~~~sfDl 77 (402)
..++.+|||+.++.|.=+.++++. .|+++|+++.-+... .+..++-|..+ .....|...++ ...+.||.
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l-~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRL-RENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHH-HHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence 356789999999999655555543 258999988655333 35555556665 34444444333 22235999
Q ss_pred EEe----cCc-ccc------cccC----------hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 78 IHC----SRC-RIN------WTRD----------DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 78 I~s----~~~-~~~------~~~d----------~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+. +.. .++ |... ...+|....+.|||||.++.+|-
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 995 211 111 1111 13678889999999999999973
No 408
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.50 E-value=0.0014 Score=59.08 Aligned_cols=91 Identities=19% Similarity=0.207 Sum_probs=52.8
Q ss_pred eEEeccccchHHHHHHhh--cCCCceEEEeccCCCCCChhhHHhcCc---ccccccCCCCCCCCCCcccEEEEccccccc
Q 015704 257 NVLDMRAGFGGFAAALIE--QKFDCWVMNVVPVSGFNTLPVIYDRGL---IGVMHDWCEPFDTYPRTYDLLHAAGLFSVE 331 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~--~~~~~~~~~v~~~~~~~~~~~~~~rg~---~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~ 331 (402)
.|+||-||.|.|+-.+++ +++.|+..++.|..-.-+.+-+...++ +..++.-+..+.+ ...||-|++. +
T Consensus 104 ~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~-----l 177 (200)
T PF02475_consen 104 VVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMN-----L 177 (200)
T ss_dssp EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE-------
T ss_pred EEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEEC-----C
Confidence 599999999999999998 666556666666542222222222233 4344443433333 4799977776 3
Q ss_pred cccCCHHHHHHHhhhhccCCcEEE
Q 015704 332 SKRCNMSTIMLEMDRMLRPGGHVY 355 (402)
Q Consensus 332 ~~~~~~~~~l~e~~RvLrpgG~~~ 355 (402)
+.. -...|.+..+++|+||.+-
T Consensus 178 p~~--~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 PES--SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp TSS--GGGGHHHHHHHEEEEEEEE
T ss_pred hHH--HHHHHHHHHHHhcCCcEEE
Confidence 322 2478889999999999863
No 409
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=96.49 E-value=0.0096 Score=55.78 Aligned_cols=39 Identities=15% Similarity=0.304 Sum_probs=28.6
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD 298 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~ 298 (402)
-..|||+|||+|.++..|++++. .|+.+| ++.+++.+.+
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~~-----~v~~iE~d~~~~~~l~~ 69 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRAK-----KVTAIEIDPRLAEILRK 69 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhCC-----cEEEEECCHHHHHHHHH
Confidence 35699999999999999999976 355555 3455555544
No 410
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.46 E-value=0.0038 Score=59.31 Aligned_cols=115 Identities=20% Similarity=0.228 Sum_probs=69.1
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHh----cCc---ccccccCCCCCCCCCCcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYD----RGL---IGVMHDWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~----rg~---~~~~~~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
+.|||+|||.|.....-+..|+. .|-+++.++|.+.|.. ..+ |.++...-|++. .|+..|++++--.=
T Consensus 179 kiVlDVGaGSGILS~FAaqAGA~----~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdie-LPEk~DviISEPMG 253 (517)
T KOG1500|consen 179 KIVLDVGAGSGILSFFAAQAGAK----KVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIE-LPEKVDVIISEPMG 253 (517)
T ss_pred cEEEEecCCccHHHHHHHHhCcc----eEEEEehhHHHHHHHHHHhcCCccceEEEccCcccccc-CchhccEEEeccch
Confidence 45999999999877776666652 4445554566655432 222 555655556643 78999999986322
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeC-------hhhHHHHHHHHHhcCce
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-------IDVMDELQEIGKAMGWH 376 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~-------~~~~~~~~~~~~~~~w~ 376 (402)
..|-+. .+...-...+|.|||.|..+=+-. .+..--++..-+..-|-
T Consensus 254 ~mL~NE-RMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWy 307 (517)
T KOG1500|consen 254 YMLVNE-RMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWY 307 (517)
T ss_pred hhhhhH-HHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhh
Confidence 222222 223333445699999999886632 12333455555666664
No 411
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.40 E-value=0.01 Score=53.25 Aligned_cols=102 Identities=15% Similarity=0.198 Sum_probs=62.5
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEecccc-CC-CCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR-RL-PYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~-~l-p~~~~sfDlI~s~~~ 83 (402)
.++.+||.+|-|-|.....+.++ .-.-++..+.-+ +.+...+-...-+.++..+.-+ -+ .++++.||-|+- ..
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~-krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~y-DT 177 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVL-KRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYY-DT 177 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHH-HHHHhcccccccceEEEecchHhhhccccccCcceeEe-ec
Confidence 46889999999999877666655 233456665322 2222222111111222222111 11 246788999994 44
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+-...+|...+.+.+.|+|||+|.+-+-.
T Consensus 178 y~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 178 YSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 44555678889999999999999987763
No 412
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.40 E-value=0.011 Score=53.46 Aligned_cols=98 Identities=15% Similarity=0.186 Sum_probs=63.1
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC----CCCCeeEEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY----PSQAFDLIH 79 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~----~~~sfDlI~ 79 (402)
+++.+||-+|..+|....++.+- .|.++++++... ......|+++. +..-...|+. .|. --+.+|+|+
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~-rdL~~la~~R~-NIiPIl~DAr-~P~~Y~~lv~~VDvI~ 148 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM-RDLLNLAKKRP-NIIPILEDAR-HPEKYRMLVEMVDVIF 148 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHST-TEEEEES-TT-SGGGGTTTS--EEEEE
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH-HHHHHHhccCC-ceeeeeccCC-ChHHhhcccccccEEE
Confidence 46789999999999877777642 688999998654 33446776663 2222333432 221 124899999
Q ss_pred ecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 80 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 80 s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+- + ..+++..-++.++...||+||.++++.
T Consensus 149 ~D-V--aQp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 149 QD-V--AQPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EE----SSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ec-C--CChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 75 3 223334667888889999999999984
No 413
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.36 E-value=0.011 Score=53.09 Aligned_cols=131 Identities=16% Similarity=0.227 Sum_probs=71.6
Q ss_pred eEEeccccchHHHHHHhhcCCC---ceEEEeccCCCCCChhhHHhcCccccccc--CCCCCCC-CC-CcccEEEEcccc-
Q 015704 257 NVLDMRAGFGGFAAALIEQKFD---CWVMNVVPVSGFNTLPVIYDRGLIGVMHD--WCEPFDT-YP-RTYDLLHAAGLF- 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~rg~~~~~~~--~~~~~~~-~~-~sfD~v~~~~~~- 328 (402)
.|+|+||-+|+.+..++++... |..+++.|.+....+... +| +++. ..+.+.. ++ ..+|+|.|...=
T Consensus 48 ~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~i--q~---d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~ 122 (205)
T COG0293 48 VVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFL--QG---DITDEDTLEKLLEALGGAPVDVVLSDMAPN 122 (205)
T ss_pred EEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEE--ee---eccCccHHHHHHHHcCCCCcceEEecCCCC
Confidence 4999999999999988877333 677888888743222111 11 2211 0001111 33 346999864211
Q ss_pred -------ccccccCCHHHHHHHhh-hhccCCcEEEEEe-----ChhhHHHHHHHHHhcCceEEEeecCCC-CCCceEEEE
Q 015704 329 -------SVESKRCNMSTIMLEMD-RMLRPGGHVYIRD-----SIDVMDELQEIGKAMGWHVTLRETAEG-PHASYRILT 394 (402)
Q Consensus 329 -------~~~~~~~~~~~~l~e~~-RvLrpgG~~~~~~-----~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~l~ 394 (402)
.|..-- .+.....||. ++|+|||.|++.. .++.+..++..+++ +.+...... +..+|-+++
T Consensus 123 ~~g~~~~Dh~r~~-~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~----v~~~KP~aSR~~S~E~y~v 197 (205)
T COG0293 123 TSGNRSVDHARSM-YLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRK----VKIFKPKASRKRSREIYLV 197 (205)
T ss_pred cCCCccccHHHHH-HHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhce----eEEecCccccCCCceEEEE
Confidence 121110 1124444444 6999999999984 34445555555444 333332211 233588888
Q ss_pred EEe
Q 015704 395 ADK 397 (402)
Q Consensus 395 ~~k 397 (402)
|.+
T Consensus 198 ~~~ 200 (205)
T COG0293 198 AKG 200 (205)
T ss_pred Eec
Confidence 875
No 414
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.30 E-value=0.0011 Score=56.05 Aligned_cols=49 Identities=24% Similarity=0.296 Sum_probs=41.7
Q ss_pred ccCCCCCCCCeeEEEecCcccccccC-hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 65 TRRLPYPSQAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 65 ~~~lp~~~~sfDlI~s~~~~~~~~~d-~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
....+|.++|.|+|++..+..|+..+ ...++++++|.|||||++-++.+
T Consensus 38 s~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 38 SNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred hhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 35567899999999999888888755 36789999999999999999953
No 415
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.28 E-value=0.0056 Score=55.49 Aligned_cols=97 Identities=20% Similarity=0.281 Sum_probs=62.9
Q ss_pred cceEEeccc--cchHHHHHH--hhcCCCceEEEeccCCCCCChhhHHhcCc---ccccccCC-CC----CCCCC-CcccE
Q 015704 255 LRNVLDMRA--GFGGFAAAL--IEQKFDCWVMNVVPVSGFNTLPVIYDRGL---IGVMHDWC-EP----FDTYP-RTYDL 321 (402)
Q Consensus 255 ~~~vLD~g~--g~G~~~~~l--~~~~~~~~~~~v~~~~~~~~~~~~~~rg~---~~~~~~~~-~~----~~~~~-~sfD~ 321 (402)
.++.||+|. ||+.++.+| -+.| .|.++++.+..-.-..++....|+ |..++..+ +. +..++ ++||+
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dG-rv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDG-RVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCc-eEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 345999995 555555444 3455 355666665543334566666677 55555332 22 22245 89999
Q ss_pred EEEccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 322 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 322 v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
++.. | ++.+......+.-|+|||||.+++..
T Consensus 153 aFvD----a--dK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 153 AFVD----A--DKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEEc----c--chHHHHHHHHHHHhhcccccEEEEec
Confidence 9987 3 34456689999999999999999874
No 416
>PRK00536 speE spermidine synthase; Provisional
Probab=96.25 E-value=0.017 Score=54.25 Aligned_cols=91 Identities=16% Similarity=0.047 Sum_probs=58.4
Q ss_pred CCCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhc------Cc----ccccccCCCCCCC-CCCccc
Q 015704 252 KMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR------GL----IGVMHDWCEPFDT-YPRTYD 320 (402)
Q Consensus 252 ~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~r------g~----~~~~~~~~~~~~~-~~~sfD 320 (402)
-+..++||=+|.|-|+.++.+.+..- .+..+.+| +..++.+.+- ++ +..+. + +.. .+++||
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID-~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~---~~~~~~~~fD 141 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYDT---HVDFVQAD-EKILDSFISFFPHFHEVKNNKNFTHAK-Q---LLDLDIKKYD 141 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECC-HHHHHHHHHHCHHHHHhhcCCCEEEee-h---hhhccCCcCC
Confidence 35678899999999999999999852 22333333 2333333331 12 11111 1 111 137899
Q ss_pred EEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 321 LLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 321 ~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+|+....+ .+.....+.|.|+|||.++...
T Consensus 142 VIIvDs~~--------~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 142 LIICLQEP--------DIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred EEEEcCCC--------ChHHHHHHHHhcCCCcEEEECC
Confidence 99998532 2466788999999999999964
No 417
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=96.22 E-value=0.0056 Score=57.05 Aligned_cols=96 Identities=16% Similarity=0.160 Sum_probs=57.1
Q ss_pred CcceEEeccccchHHHHHHhhc-CCCceEEEeccCCCCCChh----hHHhcCc---ccccccCC-CCCCC------CCCc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSGFNTLP----VIYDRGL---IGVMHDWC-EPFDT------YPRT 318 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~~~~~~~----~~~~rg~---~~~~~~~~-~~~~~------~~~s 318 (402)
+.++||++|+++|--+-+|+.. +.+..++.+... +...+ .....|+ |..++.-+ +-++. ++.+
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~--~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDIN--RENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCC--HHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 4567999999999877777653 111233333332 22232 3334465 33333211 11111 2368
Q ss_pred ccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 319 YDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 319 fD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
||+|+... ++......+....+.|||||.+++-
T Consensus 157 fD~iFiDa------dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 157 FDFIFVDA------DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred ccEEEecC------CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 99999982 2445567888888999999998876
No 418
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.14 E-value=0.061 Score=47.10 Aligned_cols=127 Identities=17% Similarity=0.176 Sum_probs=69.5
Q ss_pred cceEEeccccchHHHHHHhhc-CCCc--eEEEeccCCCCCChhhHHhcCc-cccc-ccCCCCCCCCCCcccEEEEccccc
Q 015704 255 LRNVLDMRAGFGGFAAALIEQ-KFDC--WVMNVVPVSGFNTLPVIYDRGL-IGVM-HDWCEPFDTYPRTYDLLHAAGLFS 329 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~-~~~~--~~~~v~~~~~~~~~~~~~~rg~-~~~~-~~~~~~~~~~~~sfD~v~~~~~~~ 329 (402)
...+|++|||+|-.++.|++. +.++ ..++++|..-..++..|.-.+. +..+ .+....+. +++.|++...-=+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~--~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLR--NESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhc--cCCccEEEECCCcC
Confidence 334999999999999999887 2122 3444444433344444444433 1111 11111111 26666665542221
Q ss_pred cccccC------------------CHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcCceEEEeecC
Q 015704 330 VESKRC------------------NMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTLRETA 383 (402)
Q Consensus 330 ~~~~~~------------------~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~ 383 (402)
--.+.| -+..+|.-+.-+|-|-|.|++---. -....+-++.++-.|.+.+....
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~~~R 194 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIAMQR 194 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEEEEE
Confidence 111111 1235666777888999999886321 12444555778888887776554
No 419
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.13 E-value=0.027 Score=51.19 Aligned_cols=94 Identities=18% Similarity=0.208 Sum_probs=59.7
Q ss_pred CCeEEEECCccchhHHHHc----cCCceEEeCCccchHHHHH-HHHHHcCCCc-EEEeccccCCCCCCCCeeEEEecCcc
Q 015704 11 LRVVMDAGCGVASFGAYLL----PRNVITMSIAPKDVHENQI-QFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~----~~~v~~vdi~~~~~~~a~~-~~a~~~~~~~-~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
+.+++|||+|.|.=+..|+ +.+++-+|....-. +.. ....+-++++ .+....++.+.-...-||+|.|-.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~--~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKI--AFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHH--HHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc-
Confidence 6899999999995554433 33676666655322 122 3344557774 4555566666532111999997533
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
.+...++.-+...+|+||.++.-
T Consensus 145 ----a~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 145 ----ASLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred ----cchHHHHHHHHHhcccCCcchhh
Confidence 25567888889999999987544
No 420
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.07 E-value=0.0063 Score=55.09 Aligned_cols=99 Identities=14% Similarity=0.067 Sum_probs=50.5
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHH--HHHH----HcCC---CcEEEeccccCCCCC---CC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQI--QFAL----ERGA---PAMVAAFATRRLPYP---SQ 73 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~--~~a~----~~~~---~~~~~~~d~~~lp~~---~~ 73 (402)
+....+|+|||.|......+.. ..+|+++.+.-...+.. +..+ ..+. +..+..+|..+.++. -.
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s 121 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWS 121 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGH
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhc
Confidence 5679999999999765444322 48899998754332221 1111 1122 112334443222211 13
Q ss_pred CeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEE
Q 015704 74 AFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAW 110 (402)
Q Consensus 74 sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~ 110 (402)
..|+|++++.. +.++....+.+....||+|-.++-
T Consensus 122 ~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 122 DADVVFVNNTC--FDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp C-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred CCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEE
Confidence 46999998653 444566778888889998877654
No 421
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.02 E-value=0.036 Score=54.35 Aligned_cols=80 Identities=10% Similarity=0.133 Sum_probs=54.7
Q ss_pred ceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCcccccccCh-------HHHHHHHHHhcC
Q 015704 33 VITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDD-------GILLLEVNRMLR 103 (402)
Q Consensus 33 v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~~~d~-------~~~l~e~~r~Lk 103 (402)
+.|+|+++.++..|. ..|+..|.. ..+.+.|+..++-+.+.+|+|+||...-.-..+. ..+.+.+.+.++
T Consensus 257 ~~G~Did~r~i~~Ak-~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~ 335 (381)
T COG0116 257 IYGSDIDPRHIEGAK-ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLA 335 (381)
T ss_pred EEEecCCHHHHHHHH-HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhc
Confidence 569999998887665 667777765 3467778777765547899999986532211121 234556678888
Q ss_pred CCeEEEEEeC
Q 015704 104 AGGYFAWAAQ 113 (402)
Q Consensus 104 pgG~li~~~~ 113 (402)
--+.++|++.
T Consensus 336 ~ws~~v~tt~ 345 (381)
T COG0116 336 GWSRYVFTTS 345 (381)
T ss_pred CCceEEEEcc
Confidence 8888988863
No 422
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.01 E-value=0.0077 Score=59.86 Aligned_cols=92 Identities=17% Similarity=0.181 Sum_probs=54.6
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc--ccccccCCCCCCCCCCcccEEEEccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMHDWCEPFDTYPRTYDLLHAAGLFS 329 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~~~~~~~~~~~~sfD~v~~~~~~~ 329 (402)
.|||++||+|.++..++.... +..|+.+| +++.++.+.+ .|+ +..++.-.+.+..-...||+|...- +
T Consensus 60 ~vLDl~aGsG~~~l~~a~~~~---~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~- 134 (382)
T PRK04338 60 SVLDALSASGIRGIRYALETG---VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F- 134 (382)
T ss_pred EEEECCCcccHHHHHHHHHCC---CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C-
Confidence 599999999999999976521 11344554 3334433322 233 1122222111111135799999972 1
Q ss_pred cccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 330 VESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
-.+..+|....+.+||||.+.+|-
T Consensus 135 -----Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 -----GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred -----CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 123567777678899999999993
No 423
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.00 E-value=0.022 Score=56.47 Aligned_cols=113 Identities=19% Similarity=0.222 Sum_probs=67.5
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----CcccccccCCC-----CCCCCC---CcccEEE
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GLIGVMHDWCE-----PFDTYP---RTYDLLH 323 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~~~~~~~~~~-----~~~~~~---~sfD~v~ 323 (402)
.|||+=|-+|+|+.+.+..|+. .|+.+| +...++.+.+. |+-..-|.|-. -+..+. ..||+|+
T Consensus 220 rvLNlFsYTGgfSv~Aa~gGA~----~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 220 RVLNLFSYTGGFSVHAALGGAS----EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred eEEEecccCcHHHHHHHhcCCC----ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 4999999999999999999983 455555 34455444433 44222222211 111122 3999999
Q ss_pred Ecc-ccccc-----cccCCHHHHHHHhhhhccCCcEEEEEeCh------hhHHHHHHHHHhc
Q 015704 324 AAG-LFSVE-----SKRCNMSTIMLEMDRMLRPGGHVYIRDSI------DVMDELQEIGKAM 373 (402)
Q Consensus 324 ~~~-~~~~~-----~~~~~~~~~l~e~~RvLrpgG~~~~~~~~------~~~~~~~~~~~~~ 373 (402)
..- .|.-- .-..+...++....++|+|||.++++... +..+.+.+-+...
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~ 357 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAA 357 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhc
Confidence 840 01110 00113458889999999999999999642 3344444544444
No 424
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=95.96 E-value=0.021 Score=55.46 Aligned_cols=99 Identities=16% Similarity=0.119 Sum_probs=74.2
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcE--EEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAM--VAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~--~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
..+.+|||+=||.|.++..++.. .|.++|++|..+.... +.++-++.... ...+|....+..-+.||-|+.+..
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~-eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLK-ENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHH-HHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 45889999999999999887765 4899999997764443 55555555443 566777666655588999996532
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.+...++....+.+++||.+.+-.+
T Consensus 266 -----~~a~~fl~~A~~~~k~~g~iHyy~~ 290 (341)
T COG2520 266 -----KSAHEFLPLALELLKDGGIIHYYEF 290 (341)
T ss_pred -----CcchhhHHHHHHHhhcCcEEEEEec
Confidence 2446788889999999999988754
No 425
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=95.96 E-value=0.0015 Score=58.05 Aligned_cols=91 Identities=15% Similarity=0.257 Sum_probs=59.3
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-ccccccCCCCCCCCCCcccEEEEcccccccc
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYPRTYDLLHAAGLFSVES 332 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~~ 332 (402)
-.++||+|+|-|.++..++..- -.|-+.+ +..|...-..++. +-...+|.+. .=.||+|.|-+++.--
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f-----eevyATElS~tMr~rL~kk~ynVl~~~ew~~t----~~k~dli~clNlLDRc- 182 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF-----EEVYATELSWTMRDRLKKKNYNVLTEIEWLQT----DVKLDLILCLNLLDRC- 182 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH-----HHHHHHHhhHHHHHHHhhcCCceeeehhhhhc----CceeehHHHHHHHHhh-
Confidence 3569999999999998887541 1244444 3334433333333 2223344311 1259999999877532
Q ss_pred ccCCHHHHHHHhhhhccC-CcEEEEE
Q 015704 333 KRCNMSTIMLEMDRMLRP-GGHVYIR 357 (402)
Q Consensus 333 ~~~~~~~~l~e~~RvLrp-gG~~~~~ 357 (402)
-++-.+|..++-+|+| .|.+|+.
T Consensus 183 --~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 183 --FDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred --cChHHHHHHHHHHhccCCCcEEEE
Confidence 2367999999999999 9999998
No 426
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.92 E-value=0.023 Score=56.25 Aligned_cols=94 Identities=13% Similarity=0.076 Sum_probs=65.9
Q ss_pred CeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCC-CCCCCCeeEEEecCcc
Q 015704 12 RVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRL-PYPSQAFDLIHCSRCR 84 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~l-p~~~~sfDlI~s~~~~ 84 (402)
.+|||+.||+|..+...+.+ .|+++|+++....... +.++.++.. ..+...|...+ ......||+|....
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~-~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIK-NNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence 48999999999988877754 5899999987665443 444444443 33444454332 11235799998642
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
. ..+..++..+.+.+++||.+.++
T Consensus 123 f---Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 123 F---GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C---CCcHHHHHHHHHhcccCCEEEEE
Confidence 1 24568999999999999999998
No 427
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.92 E-value=0.012 Score=51.92 Aligned_cols=68 Identities=21% Similarity=0.166 Sum_probs=40.6
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhH---HhcCcccccccCCCCCCCCCCcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVI---YDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~---~~rg~~~~~~~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
.|+|+|||+|.++-..+-.|+. .|..|... +.+++++ .++++ +.+--.+.++..|..-||.|+..-=|
T Consensus 48 ~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD--~~a~ei~r~N~~~l~-g~v~f~~~dv~~~~~~~dtvimNPPF 118 (198)
T COG2263 48 TVLDLGAGTGILAIGAALLGAS-RVLAVDID--PEALEIARANAEELL-GDVEFVVADVSDFRGKFDTVIMNPPF 118 (198)
T ss_pred EEEEcCCCcCHHHHHHHhcCCc-EEEEEecC--HHHHHHHHHHHHhhC-CceEEEEcchhhcCCccceEEECCCC
Confidence 3999999999998888888752 33333333 2333332 23322 22222234556677889988886444
No 428
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=95.91 E-value=0.0056 Score=52.38 Aligned_cols=66 Identities=15% Similarity=0.245 Sum_probs=48.9
Q ss_pred CCCCcccEEEEccccccc-----cccCCH---HHHHHHhhhhccCCcEEEEEeCh------------hhHHHHHHHHHhc
Q 015704 314 TYPRTYDLLHAAGLFSVE-----SKRCNM---STIMLEMDRMLRPGGHVYIRDSI------------DVMDELQEIGKAM 373 (402)
Q Consensus 314 ~~~~sfD~v~~~~~~~~~-----~~~~~~---~~~l~e~~RvLrpgG~~~~~~~~------------~~~~~~~~~~~~~ 373 (402)
.|+++||.+-|-++++|. .|+-++ ...+.++.|+|||||.+++.-+. +-..++-.++.+.
T Consensus 59 ~y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gf 138 (177)
T PF03269_consen 59 KYAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGF 138 (177)
T ss_pred HhhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCc
Confidence 377899999999999994 222222 47788889999999999999543 3355667777777
Q ss_pred CceEEE
Q 015704 374 GWHVTL 379 (402)
Q Consensus 374 ~w~~~~ 379 (402)
.|=-..
T Consensus 139 e~i~tf 144 (177)
T PF03269_consen 139 EWIDTF 144 (177)
T ss_pred EEEeee
Confidence 776553
No 429
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.86 E-value=0.027 Score=50.51 Aligned_cols=115 Identities=18% Similarity=0.234 Sum_probs=72.1
Q ss_pred HHH-HHHHHHHHHhcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcCc------cccccc
Q 015704 235 KYW-NEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGL------IGVMHD 307 (402)
Q Consensus 235 ~~w-~~~~~~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg~------~~~~~~ 307 (402)
-+| ..++..-.+.+.. +=++||.+|-|.|..+..+.+++. ..-.-+.+ .+..++.-.+-|- +-.-..
T Consensus 84 m~WEtpiMha~A~ai~t---kggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~--hp~V~krmr~~gw~ek~nViil~g~ 157 (271)
T KOG1709|consen 84 MRWETPIMHALAEAIST---KGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEA--HPDVLKRMRDWGWREKENVIILEGR 157 (271)
T ss_pred hhhhhHHHHHHHHHHhh---CCceEEEeccchHHHHHHHhhcCC-cceEEEec--CHHHHHHHHhcccccccceEEEecc
Confidence 356 3455544444332 334599999999999999888863 22222222 2334444444333 323335
Q ss_pred CCCCCCCCC-CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 308 WCEPFDTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 308 ~~~~~~~~~-~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
|-..+++.| .+||-|+-.-.=+|.++ +-..-..+-|+|||||.|..=.
T Consensus 158 WeDvl~~L~d~~FDGI~yDTy~e~yEd---l~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 158 WEDVLNTLPDKHFDGIYYDTYSELYED---LRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hHhhhccccccCcceeEeechhhHHHH---HHHHHHHHhhhcCCCceEEEec
Confidence 655667888 79999988744356553 4567778889999999998763
No 430
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=95.86 E-value=0.037 Score=54.69 Aligned_cols=110 Identities=14% Similarity=0.235 Sum_probs=63.4
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCC-CCC-------------
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPF-DTY------------- 315 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~-~~~------------- 315 (402)
.|||++||+|+|+..|++... .|+++| ++.+++.+.+. |+ +..+..-.+.+ ..+
T Consensus 209 ~vLDl~~G~G~~sl~la~~~~-----~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~ 283 (362)
T PRK05031 209 DLLELYCGNGNFTLALARNFR-----RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGID 283 (362)
T ss_pred eEEEEeccccHHHHHHHhhCC-----EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccc
Confidence 499999999999999987754 455555 34555444432 43 22222111111 001
Q ss_pred --CCcccEEEEccccccccccCCH-HHHHHHhhhhccCCcEEEEEeChhh-HHHHHHHHHhcCceEEEeec
Q 015704 316 --PRTYDLLHAAGLFSVESKRCNM-STIMLEMDRMLRPGGHVYIRDSIDV-MDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 316 --~~sfD~v~~~~~~~~~~~~~~~-~~~l~e~~RvLrpgG~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~ 382 (402)
...||+|+.. +++.++ +.++.- +.+|++.++++=+... .+.+..+.+ .|++...+-
T Consensus 284 ~~~~~~D~v~lD------PPR~G~~~~~l~~---l~~~~~ivyvSC~p~tlarDl~~L~~--gY~l~~v~~ 343 (362)
T PRK05031 284 LKSYNFSTIFVD------PPRAGLDDETLKL---VQAYERILYISCNPETLCENLETLSQ--THKVERFAL 343 (362)
T ss_pred ccCCCCCEEEEC------CCCCCCcHHHHHH---HHccCCEEEEEeCHHHHHHHHHHHcC--CcEEEEEEE
Confidence 1158999987 444332 344433 3458999999965544 444555543 688776543
No 431
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.83 E-value=0.059 Score=45.64 Aligned_cols=94 Identities=17% Similarity=0.074 Sum_probs=55.7
Q ss_pred CCCCeEEEECCccchhHHHHcc-----C---CceEEeCCccchHHHHHHHHHHcC--C-C-cEEEeccccCCCCCCCCee
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP-----R---NVITMSIAPKDVHENQIQFALERG--A-P-AMVAAFATRRLPYPSQAFD 76 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~-----~---~v~~vdi~~~~~~~a~~~~a~~~~--~-~-~~~~~~d~~~lp~~~~sfD 76 (402)
.+..+|+|+|||.|.++..|+. . .|+++|..+.....+. ..+++.+ . . ..+...+....+ .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQ-KRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHH-HHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 4567999999999999988887 3 7899999886654443 4443333 1 1 112222222111 134566
Q ss_pred EEEecCcccccccCh-HHHHHHHHHhcCCCeEEEEE
Q 015704 77 LIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 77 lI~s~~~~~~~~~d~-~~~l~e~~r~LkpgG~li~~ 111 (402)
+++. +|-..++ ..+++...+ ++-.+++.
T Consensus 102 ~~vg----LHaCG~Ls~~~l~~~~~---~~~~~l~~ 130 (141)
T PF13679_consen 102 ILVG----LHACGDLSDRALRLFIR---PNARFLVL 130 (141)
T ss_pred EEEE----eecccchHHHHHHHHHH---cCCCEEEE
Confidence 6663 6777776 455665555 55555444
No 432
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=95.81 E-value=0.0058 Score=58.56 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=40.0
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEEc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAA 325 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~~ 325 (402)
.|||+|||.|.++..|++++. .|+++| ++.+++.+.++ ++ +..++. ++..++ ..||+|+++
T Consensus 39 ~VLEIG~G~G~LT~~Ll~~~~-----~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~---Dal~~~~~~~d~VvaN 108 (294)
T PTZ00338 39 TVLEIGPGTGNLTEKLLQLAK-----KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEG---DALKTEFPYFDVCVAN 108 (294)
T ss_pred EEEEecCchHHHHHHHHHhCC-----cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEEC---CHhhhcccccCEEEec
Confidence 599999999999999999875 455555 34555544432 22 334443 223344 578998876
No 433
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.74 E-value=0.02 Score=50.94 Aligned_cols=102 Identities=21% Similarity=0.318 Sum_probs=56.6
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChh--hHHhc-----Cc---ccccccCCCCCCCCCCcccEEEEc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLP--VIYDR-----GL---IGVMHDWCEPFDTYPRTYDLLHAA 325 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~--~~~~r-----g~---~~~~~~~~~~~~~~~~sfD~v~~~ 325 (402)
.+-|||||||++...|+....+...+...-.+ .++.++ +-..| |- +++++..+--+ .|+-|-.-..+
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~--lpn~f~kgqLs 140 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF--LPNFFEKGQLS 140 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh--ccchhhhcccc
Confidence 48999999999999999887655444444433 133332 11111 11 45555544222 23444433332
Q ss_pred cccccccccC---------CH-HHHHHHhhhhccCCcEEEEEeCh
Q 015704 326 GLFSVESKRC---------NM-STIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 326 ~~~~~~~~~~---------~~-~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
-.|--.+|.. -+ ...|.|..=+||+||.++.....
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 2222211110 00 27888999999999999876543
No 434
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=95.66 E-value=0.063 Score=51.98 Aligned_cols=121 Identities=18% Similarity=0.141 Sum_probs=71.7
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cccc--ccccCCCCCCCCC-CcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GLIG--VMHDWCEPFDTYP-RTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~~~--~~~~~~~~~~~~~-~sfD~v~~~~~~ 328 (402)
+|||==||+|+|.-...-.|+ ++.+.| ...|+.-|... |+-. .+..+.-...+++ ++||.|.|.-=.
T Consensus 200 ~vlDPFcGTGgiLiEagl~G~-----~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPY 274 (347)
T COG1041 200 LVLDPFCGTGGILIEAGLMGA-----RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPY 274 (347)
T ss_pred EeecCcCCccHHHHhhhhcCc-----eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCC
Confidence 399999999999988877777 677766 34555433211 2211 1112111224478 679999995211
Q ss_pred ccc--cccC----CHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEeec
Q 015704 329 SVE--SKRC----NMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 329 ~~~--~~~~----~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
--. .... ...++|.++.++|||||++++--+....+...+.-.++.-++....|
T Consensus 275 Grst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~~~~~~f~v~~~~~~~~H 334 (347)
T COG1041 275 GRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHELEELGFKVLGRFTMRVH 334 (347)
T ss_pred CcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcchhhHhhcCceEEEEEEEeec
Confidence 100 0111 24588999999999999999988854455544444333333333443
No 435
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.65 E-value=0.051 Score=53.74 Aligned_cols=78 Identities=17% Similarity=0.263 Sum_probs=43.6
Q ss_pred CCeEEEECCccchhHHHHccC-------------------CceEEeCCccchHHHHHHHHHH-------------cCCCc
Q 015704 11 LRVVMDAGCGVASFGAYLLPR-------------------NVITMSIAPKDVHENQIQFALE-------------RGAPA 58 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~-------------------~v~~vdi~~~~~~~a~~~~a~~-------------~~~~~ 58 (402)
..+|+|+|||+|.++..+... ++.--|+-..|........... .+...
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 558999999999666443211 3444566666665444332210 01111
Q ss_pred EEEec---cccCCCCCCCCeeEEEecCccccccc
Q 015704 59 MVAAF---ATRRLPYPSQAFDLIHCSRCRINWTR 89 (402)
Q Consensus 59 ~~~~~---d~~~lp~~~~sfDlI~s~~~~~~~~~ 89 (402)
.+..+ ..-.--||.++.++++|+.+ +||..
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~s-lHWLS 176 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFS-LHWLS 176 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeecc-ceecc
Confidence 22221 12222378999999998765 78865
No 436
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=95.62 E-value=0.057 Score=51.20 Aligned_cols=143 Identities=22% Similarity=0.369 Sum_probs=86.7
Q ss_pred hHHhhHHHHHHHHHHHHhcccC---CCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCCh------------
Q 015704 230 FKAESKYWNEIIESYVRALHWK---KMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTL------------ 293 (402)
Q Consensus 230 ~~~~~~~w~~~~~~y~~~~~~~---~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~------------ 293 (402)
..+.....+..++.-...++.. ..+++ ||==|||.|+.+-.|+..|+.+. +.+ +--|+
T Consensus 124 ~~ERd~~ykpii~~l~~lfp~~~~~r~ki~-iLvPGaGlGRLa~dla~~G~~~q-----GNEfSy~Mli~S~FiLN~~~~ 197 (369)
T KOG2798|consen 124 QRERDQLYKPIIEELNSLFPSRGKERTKIR-ILVPGAGLGRLAYDLACLGFKCQ-----GNEFSYFMLICSSFILNYCKQ 197 (369)
T ss_pred chhhhhhhhhHHHHHHhhCCCccccccCce-EEecCCCchhHHHHHHHhccccc-----ccHHHHHHHHHHHHHHHhhcc
Confidence 3455555666666666555532 12332 89999999999999998886332 111 11111
Q ss_pred ---------------hhHHhcCc----ccccccC------------CCCCCC-CC-C----cccEEEEccccccccccCC
Q 015704 294 ---------------PVIYDRGL----IGVMHDW------------CEPFDT-YP-R----TYDLLHAAGLFSVESKRCN 336 (402)
Q Consensus 294 ---------------~~~~~rg~----~~~~~~~------------~~~~~~-~~-~----sfD~v~~~~~~~~~~~~~~ 336 (402)
+..++-+| +..+|.+ +-+|.. |+ . +||+|..--++-. ..+
T Consensus 198 ~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT---a~N 274 (369)
T KOG2798|consen 198 ENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT---AHN 274 (369)
T ss_pred CCcEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec---hHH
Confidence 11122222 3333333 122222 34 2 6998887744433 336
Q ss_pred HHHHHHHhhhhccCCcEEEEE--------eC--------hh-hHHHHHHHHHhcCceEEEee
Q 015704 337 MSTIMLEMDRMLRPGGHVYIR--------DS--------ID-VMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 337 ~~~~l~e~~RvLrpgG~~~~~--------~~--------~~-~~~~~~~~~~~~~w~~~~~~ 381 (402)
+-+.|.-|..+|||||++|=- |. .+ ..+.+..+++.+.|.+....
T Consensus 275 ileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 275 ILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred HHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 789999999999999998844 21 11 26788889999999998765
No 437
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.60 E-value=0.015 Score=57.20 Aligned_cols=97 Identities=18% Similarity=0.184 Sum_probs=55.0
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCC----------------CC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRL----------------PY 70 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~~l----------------p~ 70 (402)
.+.+|||+-||.|.++..|++. .|+|+|+++.++..+. ..++.+++.+. +...+.+++ ..
T Consensus 196 ~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~-~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~ 274 (352)
T PF05958_consen 196 SKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDAR-ENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDL 274 (352)
T ss_dssp -TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHH-HHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-G
T ss_pred CCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHH-HHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhh
Confidence 3348999999999999999886 8999999998876665 66666676654 443332221 11
Q ss_pred CCCCeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 71 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 71 ~~~sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
....+|+|+.-..---.. ..++..+. ++.=++++|+.
T Consensus 275 ~~~~~d~vilDPPR~G~~---~~~~~~~~---~~~~ivYvSCn 311 (352)
T PF05958_consen 275 KSFKFDAVILDPPRAGLD---EKVIELIK---KLKRIVYVSCN 311 (352)
T ss_dssp GCTTESEEEE---TT-SC---HHHHHHHH---HSSEEEEEES-
T ss_pred hhcCCCEEEEcCCCCCch---HHHHHHHh---cCCeEEEEECC
Confidence 233689988532211111 23444443 34567777753
No 438
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=95.57 E-value=0.018 Score=51.47 Aligned_cols=96 Identities=8% Similarity=0.056 Sum_probs=53.5
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc---ccccccCC-CCCCCC--C-CcccEEEE
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL---IGVMHDWC-EPFDTY--P-RTYDLLHA 324 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~---~~~~~~~~-~~~~~~--~-~sfD~v~~ 324 (402)
.|||++||+|.++-.++++|+. .|+.+| ++..++.+.+ -|+ +..+..-. +.+..+ . ..||+|+.
T Consensus 52 ~vLDLfaGsG~lglea~srga~----~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 52 HLLDVFAGSGLLGEEALSRGAK----VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred EEEEecCCCcHHHHHHHhCCCC----EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 5999999999999999999863 345554 2333332222 122 11222111 111112 1 24899888
Q ss_pred ccccccccccCCHHHHHHHh--hhhccCCcEEEEEeCh
Q 015704 325 AGLFSVESKRCNMSTIMLEM--DRMLRPGGHVYIRDSI 360 (402)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~e~--~RvLrpgG~~~~~~~~ 360 (402)
.-=+.. .....++.-+ ..+|++||.+++....
T Consensus 128 DPPy~~----~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFN----GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CcCCCC----CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 644432 1123333333 4589999999997554
No 439
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=95.56 E-value=0.027 Score=53.49 Aligned_cols=116 Identities=9% Similarity=0.047 Sum_probs=69.8
Q ss_pred CCCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcCcccccccCC-------------CCCCCCCCc
Q 015704 252 KMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWC-------------EPFDTYPRT 318 (402)
Q Consensus 252 ~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg~~~~~~~~~-------------~~~~~~~~s 318 (402)
.+..++||=+|-|.|+.++.+.+.+ ++.-+-++.+| +..+..+++. .+..+..+ +-+..++++
T Consensus 74 h~~pk~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID-~~Vi~~ar~~--l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~ 149 (282)
T COG0421 74 HPNPKRVLIIGGGDGGTLREVLKHL-PVERITMVEID-PAVIELARKY--LPEPSGGADDPRVEIIIDDGVEFLRDCEEK 149 (282)
T ss_pred CCCCCeEEEECCCccHHHHHHHhcC-CcceEEEEEcC-HHHHHHHHHh--ccCcccccCCCceEEEeccHHHHHHhCCCc
Confidence 4455799999999999999999986 24333333333 3344444332 11121111 111224569
Q ss_pred ccEEEEccccccccccCCH------HHHHHHhhhhccCCcEEEEEeCh-----hhHHHHHHHHHhcCce
Q 015704 319 YDLLHAAGLFSVESKRCNM------STIMLEMDRMLRPGGHVYIRDSI-----DVMDELQEIGKAMGWH 376 (402)
Q Consensus 319 fD~v~~~~~~~~~~~~~~~------~~~l~e~~RvLrpgG~~~~~~~~-----~~~~~~~~~~~~~~w~ 376 (402)
||+|++... |...+ ........|.|+|+|.++..... +....+.+..+++.+.
T Consensus 150 fDvIi~D~t-----dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~ 213 (282)
T COG0421 150 FDVIIVDST-----DPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSI 213 (282)
T ss_pred CCEEEEcCC-----CCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhccc
Confidence 999999821 11122 58889999999999999998211 2344555556666333
No 440
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.54 E-value=0.14 Score=46.89 Aligned_cols=94 Identities=22% Similarity=0.293 Sum_probs=63.8
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEE-eccccCCC---CCCCCeeEEEec
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVA-AFATRRLP---YPSQAFDLIHCS 81 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~-~~d~~~lp---~~~~sfDlI~s~ 81 (402)
-++..+||+|+-||.|+..++++ .|.++|+.-..++... +........ ..++..+. +. +..|+++|-
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kL-----R~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~D 151 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKL-----RNDPRVIVLERTNVRYLTPEDFT-EKPDLIVID 151 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhH-----hcCCcEEEEecCChhhCCHHHcc-cCCCeEEEE
Confidence 46789999999999999999877 7999998876553322 222222221 12222221 22 367899975
Q ss_pred CcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 82 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 82 ~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
-++. .....|..+..+++|+|.++.-.
T Consensus 152 vSFI----SL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 152 VSFI----SLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred eehh----hHHHHHHHHHHhcCCCceEEEEe
Confidence 4322 45789999999999999988764
No 441
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=95.50 E-value=0.048 Score=52.77 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=19.3
Q ss_pred CCCcceEEeccccchHHHHHHhhc
Q 015704 252 KMKLRNVLDMRAGFGGFAAALIEQ 275 (402)
Q Consensus 252 ~~~~~~vLD~g~g~G~~~~~l~~~ 275 (402)
.+.-.+|||||||.|.+...|+.+
T Consensus 112 ~~~~~~vLDIGtGag~I~~lLa~~ 135 (321)
T PRK11727 112 RGANVRVLDIGVGANCIYPLIGVH 135 (321)
T ss_pred CCCCceEEEecCCccHHHHHHHhh
Confidence 344456999999999998888776
No 442
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.47 E-value=0.066 Score=47.38 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=54.9
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccch-------HHHHHHHHHHcCCCcE-EEeccccCCCCCCCCeeE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDV-------HENQIQFALERGAPAM-VAAFATRRLPYPSQAFDL 77 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~-------~~a~~~~a~~~~~~~~-~~~~d~~~lp~~~~sfDl 77 (402)
+++.+|+|+=.|.|.+++.+... .-......+.++ ...+...+++....+. ......-.++ +.+..|+
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d~ 125 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLDL 125 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCcccc
Confidence 46789999999999999988764 111222233222 1111122222221111 1111222222 3344555
Q ss_pred EEecCc-------ccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 78 IHCSRC-------RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 78 I~s~~~-------~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++.+.. .+| .....++..++++.|||||.+.+..+
T Consensus 126 ~~~~~~yhdmh~k~i~-~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 126 VPTAQNYHDMHNKNIH-PATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred cccchhhhhhhccccC-cchHHHHHHHHHHhcCCCcEEEEEec
Confidence 553221 122 22347889999999999999999854
No 443
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.45 E-value=0.048 Score=48.21 Aligned_cols=107 Identities=19% Similarity=0.212 Sum_probs=65.9
Q ss_pred ccCCCCcceEEeccccchHHHHHHhhc-CCCceEEEeccCCC--CCCh------hhHHhcCc--ccccccCCCCCCCCCC
Q 015704 249 HWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG--FNTL------PVIYDRGL--IGVMHDWCEPFDTYPR 317 (402)
Q Consensus 249 ~~~~~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~~--~~~~------~~~~~rg~--~~~~~~~~~~~~~~~~ 317 (402)
++..+. +|.|+=-|.|-|++-|+.. |....|.++.|.+. .... ..+++.+. +..+..-.-++. -|+
T Consensus 45 Glkpg~--tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq 121 (238)
T COG4798 45 GLKPGA--TVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQ 121 (238)
T ss_pred ccCCCC--EEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCC
Confidence 344443 3999999999999998765 44448899999874 2111 23333332 222221111212 236
Q ss_pred cccEEEEccccccccc----cCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 318 TYDLLHAAGLFSVESK----RCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 318 sfD~v~~~~~~~~~~~----~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
-.|++..+++.+-++. .....++-.++.+.|||||.+.+-|
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 6777766544433221 2345689999999999999999986
No 444
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.21 E-value=0.016 Score=49.64 Aligned_cols=105 Identities=12% Similarity=0.221 Sum_probs=58.2
Q ss_pred CCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCC-CcEEEec----c--ccCCCCCCCCeeEE
Q 015704 11 LRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGA-PAMVAAF----A--TRRLPYPSQAFDLI 78 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~-~~~~~~~----d--~~~lp~~~~sfDlI 78 (402)
+.+||++|.|--.++..+... .|...|-+...+ ...+..+..+. .....+. . ..........||.|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~sv--rnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiI 107 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESV--RNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDII 107 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHH--HHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEE
Confidence 468999999965555444433 344444433222 22222222210 0001110 0 11112234689999
Q ss_pred EecCcccccccChHHHHHHHHHhcCCCeEEEEEeCCCCCC
Q 015704 79 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKH 118 (402)
Q Consensus 79 ~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~~~~~ 118 (402)
+|+.+ ..+.+....+.+.+.++|+|.|..++..|-...+
T Consensus 108 laADC-lFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~s 146 (201)
T KOG3201|consen 108 LAADC-LFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQS 146 (201)
T ss_pred Eeccc-hhHHHHHHHHHHHHHHHhCcccceeEecCcccch
Confidence 99988 4455445788999999999999988875433333
No 445
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.18 E-value=0.027 Score=53.70 Aligned_cols=103 Identities=18% Similarity=0.269 Sum_probs=65.2
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEe-ccccCC-C-CCCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAA-FATRRL-P-YPSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~-~d~~~l-p-~~~~sfDlI~s 80 (402)
.++.+|||++++.|.=+.++++. .+++.|++..-+.... ...++.|....... .|.... + .....||.|+.
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~-~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLK-ENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHH-HHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHH-HHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 46779999999999766555542 6889999886553333 44555566555333 443333 1 22346999995
Q ss_pred ----cCcccccccC------------------hHHHHHHHHHhc----CCCeEEEEEeC
Q 015704 81 ----SRCRINWTRD------------------DGILLLEVNRML----RAGGYFAWAAQ 113 (402)
Q Consensus 81 ----~~~~~~~~~d------------------~~~~l~e~~r~L----kpgG~li~~~~ 113 (402)
+.. -.+..+ ..+.|+.+.+.+ ||||+++.+|-
T Consensus 163 DaPCSg~-G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 163 DAPCSGL-GTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp ECSCCCG-GGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred CCCccch-hhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 211 111111 136788999999 99999999973
No 446
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=95.14 E-value=0.04 Score=48.77 Aligned_cols=121 Identities=12% Similarity=0.097 Sum_probs=61.3
Q ss_pred eEEeccccchHHHHHHhhcCCCce------EEEeccCC-CCCChhhHHh----cCc---ccccccCCCCCCCCCCcccEE
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCW------VMNVVPVS-GFNTLPVIYD----RGL---IGVMHDWCEPFDTYPRTYDLL 322 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~------~~~v~~~~-~~~~~~~~~~----rg~---~~~~~~~~~~~~~~~~sfD~v 322 (402)
.|||-=||+|++.-.-+..+.++. ...+.+.| .+++++.+.+ .|+ +.....-...++..+.++|.|
T Consensus 31 ~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d~I 110 (179)
T PF01170_consen 31 VVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVDAI 110 (179)
T ss_dssp -EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSCEE
T ss_pred EEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCCEE
Confidence 499999999999855443333222 01133444 3344433322 244 222322223334223799999
Q ss_pred EEcccccc-ccc----cCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEee
Q 015704 323 HAAGLFSV-ESK----RCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 323 ~~~~~~~~-~~~----~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 381 (402)
+|.-=+-. +.. ..-...++.|+.|+|+|...++++..... ++.+..-.|+.....
T Consensus 111 vtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~~----~~~~~~~~~~~~~~~ 170 (179)
T PF01170_consen 111 VTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNREL----EKALGLKGWRKRKLY 170 (179)
T ss_dssp EEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCCH----HHHHTSTTSEEEEEE
T ss_pred EECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH----HHHhcchhhceEEEE
Confidence 99722211 010 01123778999999999666666665533 344444466665443
No 447
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=95.11 E-value=0.015 Score=55.63 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=30.6
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHH
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHEN 46 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a 46 (402)
.++..++|.+||.|..+..+++. .|+|+|.++.++..+
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~a 60 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAA 60 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHH
Confidence 45679999999999999888765 589999988766444
No 448
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=95.06 E-value=0.037 Score=48.05 Aligned_cols=70 Identities=24% Similarity=0.265 Sum_probs=42.5
Q ss_pred CeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCC-C-CCCCC-eeEEEecC
Q 015704 12 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRL-P-YPSQA-FDLIHCSR 82 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~l-p-~~~~s-fDlI~s~~ 82 (402)
..|+|+.||.|..+.+++.. .|+++|+++.-+.-++ ..++-.|.. ..+..+|..++ + +.... ||+|+++.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~-hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAK-HNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHH-HHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 36999999999999999987 7999999987665444 556556643 34566664332 1 12222 89999763
No 449
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=94.95 E-value=0.061 Score=46.47 Aligned_cols=97 Identities=11% Similarity=0.116 Sum_probs=63.8
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc--CcccccccCCCC----CCCCC-CcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR--GLIGVMHDWCEP----FDTYP-RTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r--g~~~~~~~~~~~----~~~~~-~sfD~v~~~~~~ 328 (402)
.||.+|.|+|-|+.++.++|. ..-+++.++ +++....-.++ | +.++...... +..++ .-||.|+|.-=+
T Consensus 51 pVlElGPGTGV~TkaIL~~gv--~~~~L~~iE~~~dF~~~L~~~~p~-~~ii~gda~~l~~~l~e~~gq~~D~viS~lPl 127 (194)
T COG3963 51 PVLELGPGTGVITKAILSRGV--RPESLTAIEYSPDFVCHLNQLYPG-VNIINGDAFDLRTTLGEHKGQFFDSVISGLPL 127 (194)
T ss_pred eeEEEcCCccHhHHHHHhcCC--CccceEEEEeCHHHHHHHHHhCCC-ccccccchhhHHHHHhhcCCCeeeeEEecccc
Confidence 499999999999999999974 666777776 33333222211 1 2122222222 23456 799999998655
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
..++-. --..+|.+..--|++||-++.=
T Consensus 128 l~~P~~-~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 128 LNFPMH-RRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred ccCcHH-HHHHHHHHHHHhcCCCCeEEEE
Confidence 544421 2258899999999999998854
No 450
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=94.95 E-value=0.013 Score=46.93 Aligned_cols=58 Identities=17% Similarity=0.298 Sum_probs=37.1
Q ss_pred ccEEEEccccc--ccccc-CCHHHHHHHhhhhccCCcEEEEEeC--------hhhHHHHHHHHHhcCce
Q 015704 319 YDLLHAAGLFS--VESKR-CNMSTIMLEMDRMLRPGGHVYIRDS--------IDVMDELQEIGKAMGWH 376 (402)
Q Consensus 319 fD~v~~~~~~~--~~~~~-~~~~~~l~e~~RvLrpgG~~~~~~~--------~~~~~~~~~~~~~~~w~ 376 (402)
||+|.|-+|-. ||..- +.+...+..|.+.|||||.||+--. ......+.+-+++|.++
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lr 70 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLR 70 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEC
Confidence 89999988764 54321 3567899999999999999999832 12245566666666665
No 451
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=94.87 E-value=0.15 Score=48.19 Aligned_cols=102 Identities=11% Similarity=0.125 Sum_probs=54.7
Q ss_pred CCCeEEEECCccchhHHHHcc-C-----CceEEeCCccchHHHHHHHHH-Hc--CCCcEEEeccccCCCCCCCCeeEEEe
Q 015704 10 LLRVVMDAGCGVASFGAYLLP-R-----NVITMSIAPKDVHENQIQFAL-ER--GAPAMVAAFATRRLPYPSQAFDLIHC 80 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~-~-----~v~~vdi~~~~~~~a~~~~a~-~~--~~~~~~~~~d~~~lp~~~~sfDlI~s 80 (402)
.+.+|+=||||.=-++..+.. . .+.++|+++.....+. +... .. +....+...|....+..-..||+|+.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~-~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELAR-RLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHH-HHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-HHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 456999999998765554443 2 4678899887665543 2222 11 22334666666555555568999996
Q ss_pred cCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 81 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
....-.-..+..+.+.++.+.++||..+++.+
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 54322222255899999999999999999985
No 452
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=94.85 E-value=0.17 Score=47.25 Aligned_cols=96 Identities=16% Similarity=0.154 Sum_probs=62.1
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCC--CCCCeeEEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPY--PSQAFDLIH 79 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~--~~~sfDlI~ 79 (402)
.++.+|+|-|.|+|+++.++++. ++...|+...-...+..++ ++.++. ..+...|+....| .+..+|.|+
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeF-r~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVF 182 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEF-REHGIGDNVTVTHRDVCGSGFLIKSLKADAVF 182 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHH-HHhCCCcceEEEEeecccCCccccccccceEE
Confidence 47789999999999988877764 6777777554333333222 233432 2244445444443 356799998
Q ss_pred ecCcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 80 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 80 s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
.- ++ .|-.++..++.+||.+|.-+++
T Consensus 183 LD-----lP-aPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 183 LD-----LP-APWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred Ec-----CC-ChhhhhhhhHHHhhhcCceEEe
Confidence 43 22 5677888888899998865555
No 453
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=94.84 E-value=0.066 Score=53.82 Aligned_cols=98 Identities=14% Similarity=0.266 Sum_probs=66.9
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC-----cccccccCCCCCCCCC-CcccEEEEccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG-----LIGVMHDWCEPFDTYP-RTYDLLHAAGLFS 329 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg-----~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~ 329 (402)
.+|=+|||--.+..+|-+.|+. +|+-+| ++-.+.....++ ...+...- -.-..|+ +|||+|..-+.+.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~----dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d-~~~l~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFE----DITNIDSSSVVVAAMQVRNAKERPEMQMVEMD-MDQLVFEDESFDIVIDKGTLD 125 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCC----CceeccccHHHHHHHHhccccCCcceEEEEec-chhccCCCcceeEEEecCccc
Confidence 6999999999999999999873 666666 344444444443 22111111 1125588 8999999998888
Q ss_pred cccccC-------CHHHHHHHhhhhccCCcEEEEEeC
Q 015704 330 VESKRC-------NMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 330 ~~~~~~-------~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
++.... .....+.|+.|+|+|||.++.=.-
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 864221 123678999999999999776543
No 454
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.82 E-value=0.084 Score=51.57 Aligned_cols=78 Identities=13% Similarity=0.153 Sum_probs=38.3
Q ss_pred CCCeEEEECCccchhHHHHccC--------------------CceEEeCCccchHHHHHHHHHHc----CCCcEEEe---
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--------------------NVITMSIAPKDVHENQIQFALER----GAPAMVAA--- 62 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--------------------~v~~vdi~~~~~~~a~~~~a~~~----~~~~~~~~--- 62 (402)
..-+|+|+||.+|..+..+.+. ++.--|+-..|.+.-........ .....+..
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 3458999999999776544321 34455777777654443222110 12233322
Q ss_pred ccccCCCCCCCCeeEEEecCcccccc
Q 015704 63 FATRRLPYPSQAFDLIHCSRCRINWT 88 (402)
Q Consensus 63 ~d~~~lp~~~~sfDlI~s~~~~~~~~ 88 (402)
+..-.--||+++.|+++|+.+ +||.
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~a-lHWL 120 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYA-LHWL 120 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES--TTB-
T ss_pred chhhhccCCCCceEEEEEech-hhhc
Confidence 222333378999999998765 7774
No 455
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.82 E-value=0.025 Score=48.47 Aligned_cols=121 Identities=17% Similarity=0.312 Sum_probs=72.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC--CCCChhhHHhcCc--------ccccccCCCCCCCCC-CcccEEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS--GFNTLPVIYDRGL--------IGVMHDWCEPFDTYP-RTYDLLHA 324 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~--~~~~~~~~~~rg~--------~~~~~~~~~~~~~~~-~sfD~v~~ 324 (402)
+.||.+|.|+=+.+--|....+++..+-++.-. +-..++-+..+.. +--.|.| .+.+... ++||+|.|
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~-~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIW-GAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHh-hhHHHHhhCcccEEEe
Confidence 669999999999998887775544333333221 1123333333332 1011122 1223234 69999999
Q ss_pred ccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh--hhHHHHHHHHHhcCceEEEe
Q 015704 325 AGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI--DVMDELQEIGKAMGWHVTLR 380 (402)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~--~~~~~~~~~~~~~~w~~~~~ 380 (402)
+.-+=.-+. .++++.-|.+.|||-|..++..|. +.+.+....+......+...
T Consensus 110 ADClFfdE~---h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v~l~ 164 (201)
T KOG3201|consen 110 ADCLFFDEH---HESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTVCLE 164 (201)
T ss_pred ccchhHHHH---HHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEEEec
Confidence 954433222 268888999999999999998764 45666666666665555544
No 456
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=94.78 E-value=0.022 Score=54.43 Aligned_cols=77 Identities=17% Similarity=0.065 Sum_probs=49.9
Q ss_pred hcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC----cccccccCCCCCCCCC-C---
Q 015704 247 ALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----LIGVMHDWCEPFDTYP-R--- 317 (402)
Q Consensus 247 ~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg----~~~~~~~~~~~~~~~~-~--- 317 (402)
.+....+. .++|.+||.|+++..+++... ....|.++| .+.+++.+.++- -+..+|+....+..+. .
T Consensus 14 ~L~~~pg~--~vlD~TlG~GGhS~~il~~~~--~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~ 89 (296)
T PRK00050 14 ALAIKPDG--IYVDGTFGGGGHSRAILERLG--PKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLG 89 (296)
T ss_pred hhCCCCCC--EEEEeCcCChHHHHHHHHhCC--CCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCC
Confidence 33444443 599999999999999998731 123677777 577777776542 2555665554443332 3
Q ss_pred cccEEEEccc
Q 015704 318 TYDLLHAAGL 327 (402)
Q Consensus 318 sfD~v~~~~~ 327 (402)
+||.|++..-
T Consensus 90 ~vDgIl~DLG 99 (296)
T PRK00050 90 KVDGILLDLG 99 (296)
T ss_pred ccCEEEECCC
Confidence 7998887543
No 457
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=94.77 E-value=0.086 Score=51.01 Aligned_cols=97 Identities=13% Similarity=0.083 Sum_probs=58.9
Q ss_pred eEEeccccchHHHHHHhh----cCCCceEEEeccCC-CCCChhhHHhcC------------cccccccCCCCCCC--CCC
Q 015704 257 NVLDMRAGFGGFAAALIE----QKFDCWVMNVVPVS-GFNTLPVIYDRG------------LIGVMHDWCEPFDT--YPR 317 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~----~~~~~~~~~v~~~~-~~~~~~~~~~rg------------~~~~~~~~~~~~~~--~~~ 317 (402)
.++|+|||.|.=...|.+ .+ .....+|+| +...|+.+..+- +.+.+.+-.+-++. .+.
T Consensus 79 ~lIELGsG~~~Kt~~LL~aL~~~~---~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 79 MLVELGSGNLRKVGILLEALERQK---KSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred EEEEECCCchHHHHHHHHHHHhcC---CCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 599999999986654433 32 124678888 556676554431 12222221111111 123
Q ss_pred cccEEEE-ccccccccccCCHHHHHHHhhh-hccCCcEEEEE
Q 015704 318 TYDLLHA-AGLFSVESKRCNMSTIMLEMDR-MLRPGGHVYIR 357 (402)
Q Consensus 318 sfD~v~~-~~~~~~~~~~~~~~~~l~e~~R-vLrpgG~~~~~ 357 (402)
...++.. .+.|-+..+ ......|.+|.+ .|+|||.++|.
T Consensus 156 ~~r~~~flGSsiGNf~~-~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSR-PEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred CccEEEEeCccccCCCH-HHHHHHHHHHHHhhCCCCCEEEEe
Confidence 3455444 457777663 345689999999 99999999997
No 458
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.75 E-value=0.028 Score=54.00 Aligned_cols=99 Identities=22% Similarity=0.291 Sum_probs=57.7
Q ss_pred eEEeccccchHHHHHHhhcCCCceE--EEeccCCCCCChh---hHHhcCcccccccCC-----CCCCCCC--CcccEEEE
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWV--MNVVPVSGFNTLP---VIYDRGLIGVMHDWC-----EPFDTYP--RTYDLLHA 324 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~--~~v~~~~~~~~~~---~~~~rg~~~~~~~~~-----~~~~~~~--~sfD~v~~ 324 (402)
.|||+|.|+|+-+-++-+ +|- -+++-++.+..+. ...++.+...-.+|. ++-+++| .+|++++.
T Consensus 116 siLDvG~GPgtgl~A~n~----i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~ 191 (484)
T COG5459 116 SILDVGAGPGTGLWALND----IWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIV 191 (484)
T ss_pred hhhccCCCCchhhhhhcc----cCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhh
Confidence 399999999976665532 230 1111122122221 111222211112221 2234566 69999998
Q ss_pred ccccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 325 AGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
.+=|.|-...-.+...+.-..-++.|||.++|-++
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 88777755443455678888899999999999875
No 459
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=94.74 E-value=0.029 Score=49.30 Aligned_cols=92 Identities=18% Similarity=0.212 Sum_probs=59.7
Q ss_pred CeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHc----CCCc-EEEeccccCCCCCCCCeeEEEecCcc
Q 015704 12 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALER----GAPA-MVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~----~~~~-~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
..+.|+|+|+|.++...+.. +|++++.++.-. ..+.++ +..+ .+..+|+....| +..|+|+|-..=
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a-----~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlD 106 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRA-----RLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLD 106 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHH-----HHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhh
Confidence 57899999999876555443 899999887532 333333 3223 356667777666 568999985321
Q ss_pred cccc-cChHHHHHHHHHhcCCCeEEEE
Q 015704 85 INWT-RDDGILLLEVNRMLRAGGYFAW 110 (402)
Q Consensus 85 ~~~~-~d~~~~l~e~~r~LkpgG~li~ 110 (402)
-.+. +.....++.+...||-++.++=
T Consensus 107 TaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HHhhcccccHHHHHHHHHhhcCCcccc
Confidence 1112 1235678888888898887754
No 460
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.73 E-value=0.16 Score=50.38 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=15.6
Q ss_pred CC-CcccEEEEcccccccc
Q 015704 315 YP-RTYDLLHAAGLFSVES 332 (402)
Q Consensus 315 ~~-~sfD~v~~~~~~~~~~ 332 (402)
|| +|.+++|++..++-+.
T Consensus 158 fP~~Slh~~~Ss~slHWLS 176 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLS 176 (386)
T ss_pred cCCCceEEEEeeccceecc
Confidence 78 8999999999887654
No 461
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=94.72 E-value=0.21 Score=49.38 Aligned_cols=112 Identities=13% Similarity=0.220 Sum_probs=67.5
Q ss_pred CCCCCeEEEECCccchhHHHHcc----C-CceEEeCCccchHHHHHHHHHHcCCCcEEE-eccccCCC---CCCCCeeEE
Q 015704 8 IRLLRVVMDAGCGVASFGAYLLP----R-NVITMSIAPKDVHENQIQFALERGAPAMVA-AFATRRLP---YPSQAFDLI 78 (402)
Q Consensus 8 ~~~~~~VLDiGcG~G~~~~~L~~----~-~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~-~~d~~~lp---~~~~sfDlI 78 (402)
++++.||||+.+..|.=+.+++. . .+.+.|.+..-+. .....+.+-|..+.+. ..|...+| ++. +||-|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~-~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLK-SLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHH-HHHHHHHHhCCCceEEEccCcccccccccCc-cccee
Confidence 45788999999999954433332 3 5667776654442 2235555667666543 34555544 444 89999
Q ss_pred Ee----cCcccc-------cccC----------hHHHHHHHHHhcCCCeEEEEEeCCCCCChHH
Q 015704 79 HC----SRCRIN-------WTRD----------DGILLLEVNRMLRAGGYFAWAAQPVYKHEEA 121 (402)
Q Consensus 79 ~s----~~~~~~-------~~~d----------~~~~l~e~~r~LkpgG~li~~~~~~~~~~~e 121 (402)
+. +..-.- +... ..++|.....++++||+|+.||-.......|
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE 380 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENE 380 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhH
Confidence 83 331111 1110 1367788889999999999997433333333
No 462
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=94.66 E-value=0.26 Score=41.57 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=48.1
Q ss_pred ceEEeCCccchHHHHHHHHHHcCC-C-cEEEeccccCCC--CCCCCeeEEEecCcccccccC-----h---HHHHHHHHH
Q 015704 33 VITMSIAPKDVHENQIQFALERGA-P-AMVAAFATRRLP--YPSQAFDLIHCSRCRINWTRD-----D---GILLLEVNR 100 (402)
Q Consensus 33 v~~vdi~~~~~~~a~~~~a~~~~~-~-~~~~~~d~~~lp--~~~~sfDlI~s~~~~~~~~~d-----~---~~~l~e~~r 100 (402)
|.+.|+....+......... .+. . ..+...+-+.+. .+.+++|+++.|...+.-.+. + -.+++.+.+
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~-~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEE-AGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHH-TT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHh-cCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 67888888777655533333 333 2 233443333333 233589999988665554321 1 367899999
Q ss_pred hcCCCeEEEEEeCCCCCC
Q 015704 101 MLRAGGYFAWAAQPVYKH 118 (402)
Q Consensus 101 ~LkpgG~li~~~~~~~~~ 118 (402)
+|+|||.+.+..-++...
T Consensus 81 lL~~gG~i~iv~Y~GH~g 98 (140)
T PF06962_consen 81 LLKPGGIITIVVYPGHPG 98 (140)
T ss_dssp HEEEEEEEEEEE--STCH
T ss_pred hhccCCEEEEEEeCCCCC
Confidence 999999999997555444
No 463
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=94.54 E-value=0.17 Score=44.52 Aligned_cols=132 Identities=14% Similarity=0.162 Sum_probs=66.9
Q ss_pred eEEeccccchHHHHHHhhcC-CC--ceEEEeccCCCCCChhhHHhcCc--ccccccCCCCCCCCC-CcccEEEEccc---
Q 015704 257 NVLDMRAGFGGFAAALIEQK-FD--CWVMNVVPVSGFNTLPVIYDRGL--IGVMHDWCEPFDTYP-RTYDLLHAAGL--- 327 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~-~~--~~~~~v~~~~~~~~~~~~~~rg~--~~~~~~~~~~~~~~~-~sfD~v~~~~~--- 327 (402)
+|||+||.+|+...--.++- .+ |..+++.++....-..+....-+ ...+....|+ .| +-.|+|.+.-.
T Consensus 72 ~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~---lp~r~VdvVlSDMapna 148 (232)
T KOG4589|consen 72 TVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEA---LPNRPVDVVLSDMAPNA 148 (232)
T ss_pred EEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHh---CCCCcccEEEeccCCCC
Confidence 49999999999887766651 11 24444444432211111100000 0011111233 35 78899988621
Q ss_pred -----ccccc--ccCCHHHHHHHhhhhccCCcEEEEE-----eChhhHHHHHHHHHhcCceEEEeecC-CCCCCceEEEE
Q 015704 328 -----FSVES--KRCNMSTIMLEMDRMLRPGGHVYIR-----DSIDVMDELQEIGKAMGWHVTLRETA-EGPHASYRILT 394 (402)
Q Consensus 328 -----~~~~~--~~~~~~~~l~e~~RvLrpgG~~~~~-----~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~l~ 394 (402)
..|.. +.| ..+|.=---.++|+|.|++. +.......|+..+..++ ..+.+ .-..-.|.+|+
T Consensus 149 TGvr~~Dh~~~i~LC--~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk----~vKP~Asr~eS~E~y~v 222 (232)
T KOG4589|consen 149 TGVRIRDHYRSIELC--DSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNVK----KVKPDASRDESAETYLV 222 (232)
T ss_pred cCcchhhHHHHHHHH--HHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhcE----eeCCccccccccceeee
Confidence 11211 122 13333334567899999998 34455666666655443 11111 11223589999
Q ss_pred EEe
Q 015704 395 ADK 397 (402)
Q Consensus 395 ~~k 397 (402)
|.+
T Consensus 223 ~~~ 225 (232)
T KOG4589|consen 223 CLN 225 (232)
T ss_pred eee
Confidence 976
No 464
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=94.53 E-value=0.074 Score=47.38 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=23.1
Q ss_pred CeEEEECCccchhHHHHccC----CceEEeCCc
Q 015704 12 RVVMDAGCGVASFGAYLLPR----NVITMSIAP 40 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~ 40 (402)
..+.|||||.|.+...|... .+.|++|--
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~ 94 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRD 94 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhH
Confidence 46899999999998888765 577777644
No 465
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.067 Score=47.95 Aligned_cols=89 Identities=22% Similarity=0.290 Sum_probs=53.4
Q ss_pred EEeccccchHHHHHHhhc-CCCceEEEeccCCC-CCChhhH----------------HhcCcccccccCCCCCCCCC--C
Q 015704 258 VLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVI----------------YDRGLIGVMHDWCEPFDTYP--R 317 (402)
Q Consensus 258 vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~~-~~~~~~~----------------~~rg~~~~~~~~~~~~~~~~--~ 317 (402)
.||+|.|+|..++.++-. |. ...+..+++- ++.++.+ +++|-+..+-.-|- --|+ +
T Consensus 86 ~LdvGsGSGYLt~~~~~mvg~--~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr--~g~~e~a 161 (237)
T KOG1661|consen 86 FLDVGSGSGYLTACFARMVGA--TGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGR--KGYAEQA 161 (237)
T ss_pred eeecCCCccHHHHHHHHHhcC--CCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcc--ccCCccC
Confidence 999999999888777622 22 2223355552 3333222 23333222222221 1144 6
Q ss_pred cccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 318 TYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 318 sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
-||.|||- .....+.+|+--.|+|||.+++---
T Consensus 162 ~YDaIhvG---------Aaa~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 162 PYDAIHVG---------AAASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred CcceEEEc---------cCccccHHHHHHhhccCCeEEEeec
Confidence 99999998 1235777888889999999998643
No 466
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=94.43 E-value=0.014 Score=46.67 Aligned_cols=93 Identities=16% Similarity=0.138 Sum_probs=36.2
Q ss_pred EEECCccchhHHHHccC-------CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccC-CC-CCCCCeeEEEecCc
Q 015704 15 MDAGCGVASFGAYLLPR-------NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRR-LP-YPSQAFDLIHCSRC 83 (402)
Q Consensus 15 LDiGcG~G~~~~~L~~~-------~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~-lp-~~~~sfDlI~s~~~ 83 (402)
||+|+..|..+..+++. .++++|..+. .+...+..++.+. ...+...+... ++ ++.++||+|+.- .
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~--~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iD-g 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG--DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFID-G 77 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEE-S
T ss_pred CccccccccccccccccccccccCCEEEEECCCc--ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEEC-C
Confidence 68999999877766653 4788888774 1111122322222 23344444221 21 235789999954 3
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
-|-.+.....+..+.+.|+|||.+++-
T Consensus 78 -~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 78 -DHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred -CCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 232234567889999999999999874
No 467
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=94.33 E-value=0.093 Score=49.80 Aligned_cols=69 Identities=14% Similarity=0.266 Sum_probs=42.2
Q ss_pred CCeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEeCCCCCChH--------HHHHHHHHHHhhhhhcceeeee
Q 015704 73 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEE--------AQEEHWKEMLDLTTRLCWELVK 142 (402)
Q Consensus 73 ~sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~--------el~~~~~~~~~~~~~~~~~~~~ 142 (402)
++||+|+.. .++.-..+.-..+..+..+|||||+++=..|..++... .+.-...++..+.+..+|....
T Consensus 258 ~~~d~VvTc-fFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~k 334 (369)
T KOG2798|consen 258 GSYDVVVTC-FFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEK 334 (369)
T ss_pred CccceEEEE-EEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEE
Confidence 469999864 23444445678999999999999998876543322211 2222344455555555555554
No 468
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.04 E-value=0.21 Score=48.52 Aligned_cols=93 Identities=18% Similarity=0.231 Sum_probs=62.1
Q ss_pred CCCCeEEEECCc-cchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 9 RLLRVVMDAGCG-VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 9 ~~~~~VLDiGcG-~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
+++++|+=+|+| .|..+..+++. +|+++|.++ ...+.+++-+....+...+.+..+--.+.||+|+.. +
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~-----~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~t-v- 237 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSE-----EKLELAKKLGADHVINSSDSDALEAVKEIADAIIDT-V- 237 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCCh-----HHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEEC-C-
Confidence 467899999888 33566666653 788888775 344677777665554432222222112349999954 2
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
. ...+....+.||+||.+++...+
T Consensus 238 -----~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 -----G-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -----C-hhhHHHHHHHHhcCCEEEEECCC
Confidence 2 56788899999999999999655
No 469
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=93.97 E-value=0.11 Score=48.92 Aligned_cols=86 Identities=20% Similarity=0.137 Sum_probs=54.6
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHc---CCCcEEEeccccCCCCCC---CCeeEEEec
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALER---GAPAMVAAFATRRLPYPS---QAFDLIHCS 81 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~---~~~~~~~~~d~~~lp~~~---~sfDlI~s~ 81 (402)
++..|||+|+|+|.++..|++. .++++|+++... +..++. .....+...|...+..+. +.-..|++|
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~-----~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~N 104 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLA-----KHLKERFASNPNVEVINGDFLKWDLYDLLKNQPLLVVGN 104 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHH-----HHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSEEEEEEE
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHH-----HHHHHHhhhcccceeeecchhccccHHhhcCCceEEEEE
Confidence 5679999999999999999865 789999987433 333332 233456667777766554 456677776
Q ss_pred CcccccccChHHHHHHHHHhcCC
Q 015704 82 RCRINWTRDDGILLLEVNRMLRA 104 (402)
Q Consensus 82 ~~~~~~~~d~~~~l~e~~r~Lkp 104 (402)
.. .+. ...++.++...-+.
T Consensus 105 lP-y~i---s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 105 LP-YNI---SSPILRKLLELYRF 123 (262)
T ss_dssp ET-GTG---HHHHHHHHHHHGGG
T ss_pred ec-ccc---hHHHHHHHhhcccc
Confidence 43 222 24566666553333
No 470
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=93.94 E-value=0.16 Score=47.31 Aligned_cols=127 Identities=13% Similarity=0.133 Sum_probs=71.5
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhc------C----cccccccCC-CCCCCCCC-cccE
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR------G----LIGVMHDWC-EPFDTYPR-TYDL 321 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~r------g----~~~~~~~~~-~~~~~~~~-sfD~ 321 (402)
..++||=+|-|.|+.+..+.+.. ++..+.++.+| +..++.+.+- + -+..+++-+ .-+...++ .||+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD-~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEID-PEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES--HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecC-hHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 67789999999999999999875 23333444443 3344443221 1 112222111 11122455 9999
Q ss_pred EEEcccccccccc-CCHHHHHHHhhhhccCCcEEEEEe-----ChhhHHHHHHHHHhcCceEEEeec
Q 015704 322 LHAAGLFSVESKR-CNMSTIMLEMDRMLRPGGHVYIRD-----SIDVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 322 v~~~~~~~~~~~~-~~~~~~l~e~~RvLrpgG~~~~~~-----~~~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
|+....=...... ---...+..+.|.|+|||.+++.- ..+....+...+++..-.+.....
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~ 220 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTA 220 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEE
Confidence 9986322111100 001488899999999999999873 234455666667777666655443
No 471
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=93.92 E-value=0.12 Score=45.56 Aligned_cols=94 Identities=20% Similarity=0.227 Sum_probs=54.3
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC--------CCCCCCe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL--------PYPSQAF 75 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~l--------p~~~~sf 75 (402)
+++.+|||+||..|++++...++ -+.++|+-....- .|... +...|+.+. ..|+...
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~---------~Ga~~-i~~~dvtdp~~~~ki~e~lp~r~V 137 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPP---------EGATI-IQGNDVTDPETYRKIFEALPNRPV 137 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCC---------CCccc-ccccccCCHHHHHHHHHhCCCCcc
Confidence 46789999999999999877665 4778887553221 11111 111111110 1356789
Q ss_pred eEEEecCccccccc----ChH-------HHHHHHHHhcCCCeEEEEEeC
Q 015704 76 DLIHCSRCRINWTR----DDG-------ILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 76 DlI~s~~~~~~~~~----d~~-------~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+|+|- ++..-.. |.. .++.-....++|+|.|++-..
T Consensus 138 dvVlSD-MapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w 185 (232)
T KOG4589|consen 138 DVVLSD-MAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLW 185 (232)
T ss_pred cEEEec-cCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEe
Confidence 999963 3232211 111 233344566889999999854
No 472
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=93.84 E-value=0.26 Score=44.60 Aligned_cols=113 Identities=17% Similarity=0.111 Sum_probs=64.4
Q ss_pred EEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcE--EEecc-ccCCCCCCC-CeeEEEecCccc
Q 015704 14 VMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM--VAAFA-TRRLPYPSQ-AFDLIHCSRCRI 85 (402)
Q Consensus 14 VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~--~~~~d-~~~lp~~~~-sfDlI~s~~~~~ 85 (402)
|.|+||--|.+..+|.++ .++++|+++..+..+..... ..++... +..+| .+.+ +++ ..|.|+-..+--
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~-~~~l~~~i~~rlgdGL~~l--~~~e~~d~ivIAGMGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIA-KYGLEDRIEVRLGDGLEVL--KPGEDVDTIVIAGMGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHH-HTT-TTTEEEEE-SGGGG----GGG---EEEEEEE-H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCcccEEEEECCccccc--CCCCCCCEEEEecCCH
Confidence 689999999999999987 68999999988877765444 4454332 33333 3333 333 378888544311
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHHHHHhhhhhcceeeee
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVK 142 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~ 142 (402)
. -....+.+....++..-.|++.. . .....+|+. ....+|..+.
T Consensus 78 ~---lI~~ILe~~~~~~~~~~~lILqP--~-~~~~~LR~~-------L~~~gf~I~~ 121 (205)
T PF04816_consen 78 E---LIIEILEAGPEKLSSAKRLILQP--N-THAYELRRW-------LYENGFEIID 121 (205)
T ss_dssp H---HHHHHHHHTGGGGTT--EEEEEE--S-S-HHHHHHH-------HHHTTEEEEE
T ss_pred H---HHHHHHHhhHHHhccCCeEEEeC--C-CChHHHHHH-------HHHCCCEEEE
Confidence 1 12566777777777777888883 2 333444433 3345666655
No 473
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=93.83 E-value=0.41 Score=47.11 Aligned_cols=110 Identities=18% Similarity=0.265 Sum_probs=57.9
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChh----hHHhcCc--ccccccCCCCCCC---------------
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLP----VIYDRGL--IGVMHDWCEPFDT--------------- 314 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~----~~~~rg~--~~~~~~~~~~~~~--------------- 314 (402)
.|||+=||.|+|+-.|++... .|.+++ .+++++ -+...|+ +..++..++.+..
T Consensus 199 ~vlDlycG~G~fsl~la~~~~-----~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~ 273 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAK-----KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGID 273 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSS-----EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-
T ss_pred cEEEEeecCCHHHHHHHhhCC-----eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhh
Confidence 599999999999999999976 344443 233333 3333344 2333222222211
Q ss_pred CC-CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeChhh-HHHHHHHHHhcCceEEEee
Q 015704 315 YP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDV-MDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 315 ~~-~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~ 381 (402)
.. ..+|+|+.. ++|.++...+.+.- .++.=.+++|=+... .+-++. +.+ .|++....
T Consensus 274 ~~~~~~d~vilD------PPR~G~~~~~~~~~--~~~~~ivYvSCnP~tlaRDl~~-L~~-~y~~~~v~ 332 (352)
T PF05958_consen 274 LKSFKFDAVILD------PPRAGLDEKVIELI--KKLKRIVYVSCNPATLARDLKI-LKE-GYKLEKVQ 332 (352)
T ss_dssp GGCTTESEEEE---------TT-SCHHHHHHH--HHSSEEEEEES-HHHHHHHHHH-HHC-CEEEEEEE
T ss_pred hhhcCCCEEEEc------CCCCCchHHHHHHH--hcCCeEEEEECCHHHHHHHHHH-Hhh-cCEEEEEE
Confidence 11 257888776 55666555444433 366778888855544 444444 444 68876543
No 474
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=93.78 E-value=0.26 Score=49.97 Aligned_cols=100 Identities=16% Similarity=0.182 Sum_probs=62.2
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCC-C--CC--CCCeeE-EEe
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRL-P--YP--SQAFDL-IHC 80 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~~l-p--~~--~~sfDl-I~s 80 (402)
.+..+||+.||||.++..+++. .|+|+++++.++..|. ..|..+++.+. ++++.++++ + +. .++=++ ++.
T Consensus 383 ~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~-~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v~ii 461 (534)
T KOG2187|consen 383 ADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAE-KNAQINGISNATFIVGQAEDLFPSLLTPCCDSETLVAII 461 (534)
T ss_pred CCcEEEEEeecCCceehhhhccccceeeeecChhhcchhh-hcchhcCccceeeeecchhhccchhcccCCCCCceEEEE
Confidence 3468999999999999999887 8999999998886665 66667777654 555533332 1 00 012232 221
Q ss_pred cCcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 81 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
...--- =...+++.+.+.-++--.++++..
T Consensus 462 DPpR~G---lh~~~ik~l~~~~~~~rlvyvSCn 491 (534)
T KOG2187|consen 462 DPPRKG---LHMKVIKALRAYKNPRRLVYVSCN 491 (534)
T ss_pred CCCccc---ccHHHHHHHHhccCccceEEEEcC
Confidence 111000 014666777666667777777753
No 475
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.61 E-value=0.43 Score=42.67 Aligned_cols=97 Identities=18% Similarity=0.184 Sum_probs=63.8
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC----CCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY----PSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~----~~~sfDlI~s 80 (402)
+++.+||=+|+.+|....++.+- .+.++++++....+- +..+.++... .-...|+ ..|. --+..|+|++
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reL-l~~a~~R~Ni-~PIL~DA-~~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMREL-LDVAEKRPNI-IPILEDA-RKPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHH-HHHHHhCCCc-eeeeccc-CCcHHhhhhcccccEEEE
Confidence 46789999999999877777653 588999999766444 4666665321 1122232 2231 1246899996
Q ss_pred cCcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 81 SRCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
--. -++...-+..++..-||+||+++++
T Consensus 152 DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 152 DVA---QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred ecC---CchHHHHHHHHHHHhcccCCeEEEE
Confidence 421 1222356778899999999987776
No 476
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.58 E-value=0.31 Score=47.10 Aligned_cols=103 Identities=13% Similarity=0.131 Sum_probs=53.5
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC---cEEEeccccCCCCC-CCCeeEEEe
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRRLPYP-SQAFDLIHC 80 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~---~~~~~~d~~~lp~~-~~sfDlI~s 80 (402)
.+++|||+|.|.|.-..++..- .++-++.++. +.+.....+..-... ........+.++++ ...|++|+.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~-lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~ 191 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPA-LRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIV 191 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHH-HHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhh
Confidence 4568999999998655444332 2222333331 111111122211111 00111112344443 356888886
Q ss_pred cCcccccccC--hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 81 SRCRINWTRD--DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 81 ~~~~~~~~~d--~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
..-+++.... ....++.+..++.|||.|++...
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 5444443322 24578899999999999999953
No 477
>PRK13699 putative methylase; Provisional
Probab=93.57 E-value=0.12 Score=47.54 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=37.3
Q ss_pred CCCCC-CcccEEEEcc---c-ccccccc--------CCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCce
Q 015704 312 FDTYP-RTYDLLHAAG---L-FSVESKR--------CNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWH 376 (402)
Q Consensus 312 ~~~~~-~sfD~v~~~~---~-~~~~~~~--------~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~ 376 (402)
+..+| +|+|+|+++- + +.+...+ .-...++.|+.|||||||.+++--.-.....+...+++..|.
T Consensus 13 l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~~~~~~al~~~GF~ 90 (227)
T PRK13699 13 MARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFS 90 (227)
T ss_pred HHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHHHCCCE
Confidence 34577 7999998871 1 1110000 113578999999999999998632221123334444554443
No 478
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.52 E-value=1 Score=40.32 Aligned_cols=134 Identities=19% Similarity=0.202 Sum_probs=82.2
Q ss_pred eEEeccccchHHHHHHhhc---CCCceEEEeccCCCCCChhhHHhcCc-ccccccCCCC--CCCCCCcccEEEEcccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSGFNTLPVIYDRGL-IGVMHDWCEP--FDTYPRTYDLLHAAGLFSV 330 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~---~~~~~~~~v~~~~~~~~~~~~~~rg~-~~~~~~~~~~--~~~~~~sfD~v~~~~~~~~ 330 (402)
.||=+|+..|+...+.++- |. ++.+...|-...+.+..+.+|-- +..+-|-.-+ ...+=...|+|++.
T Consensus 79 ~VLYLGAasGTTvSHVSDIv~~G~-iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D----- 152 (231)
T COG1889 79 KVLYLGAASGTTVSHVSDIVGEGR-IYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQD----- 152 (231)
T ss_pred EEEEeeccCCCcHhHHHhccCCCc-EEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEe-----
Confidence 4999999999999988765 32 46666666655677788888854 5555442211 01111456888776
Q ss_pred ccccCCHHHHHHHhhhhccCCcEEEEE----------eChhhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEe
Q 015704 331 ESKRCNMSTIMLEMDRMLRPGGHVYIR----------DSIDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 397 (402)
Q Consensus 331 ~~~~~~~~~~l~e~~RvLrpgG~~~~~----------~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 397 (402)
...+...+-+..-++.-||+||++++. |+.++...--+.+..-..++..+-+.+ |.++.-+++..|
T Consensus 153 VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~Le-Pye~DH~~i~~~ 228 (231)
T COG1889 153 VAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLE-PYEKDHALIVAK 228 (231)
T ss_pred cCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccC-CcccceEEEEEe
Confidence 222333456778889999999988887 233444433334455556666655432 444555555544
No 479
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=93.49 E-value=0.12 Score=49.38 Aligned_cols=78 Identities=14% Similarity=0.183 Sum_probs=38.1
Q ss_pred CCeEEEECCccchhHHHHcc----CCceEEeCCccchHHHHHHHHHHcCCCcE--EE-eccc----cCCCCCCCCeeEEE
Q 015704 11 LRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAPAM--VA-AFAT----RRLPYPSQAFDLIH 79 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~----~~v~~vdi~~~~~~~a~~~~a~~~~~~~~--~~-~~d~----~~lp~~~~sfDlI~ 79 (402)
..++||||||...+-..|.. -.++|.|+++..+..|.....+..++... +. +.+. ..+..+++.||+..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 45899999998855444433 38899999998887776444433244432 21 1111 11222346899999
Q ss_pred ecCcccccc
Q 015704 80 CSRCRINWT 88 (402)
Q Consensus 80 s~~~~~~~~ 88 (402)
||..++.-.
T Consensus 183 CNPPFy~s~ 191 (299)
T PF05971_consen 183 CNPPFYSSQ 191 (299)
T ss_dssp E-----SS-
T ss_pred cCCccccCh
Confidence 998755433
No 480
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.42 E-value=0.45 Score=48.12 Aligned_cols=115 Identities=17% Similarity=0.252 Sum_probs=76.9
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcCc--ccccccCCCCCCCCC---CcccEEEEccccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGL--IGVMHDWCEPFDTYP---RTYDLLHAAGLFSVE 331 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg~--~~~~~~~~~~~~~~~---~sfD~v~~~~~~~~~ 331 (402)
.|||+=||.|+|+-.|+++...|..+.+++..-..+.+-|...|+ +.+.-...|.+..=. ..||.|+..
T Consensus 296 ~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvD------ 369 (432)
T COG2265 296 RVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVD------ 369 (432)
T ss_pred EEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEEC------
Confidence 499999999999999998877555555555433334444444455 222223333333321 478999988
Q ss_pred cccCCHH-HHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEE
Q 015704 332 SKRCNMS-TIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVT 378 (402)
Q Consensus 332 ~~~~~~~-~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~ 378 (402)
++|+... .+++++.+ ++|-..+.+|=+.....+--..+.+-++++.
T Consensus 370 PPR~G~~~~~lk~l~~-~~p~~IvYVSCNP~TlaRDl~~L~~~gy~i~ 416 (432)
T COG2265 370 PPRAGADREVLKQLAK-LKPKRIVYVSCNPATLARDLAILASTGYEIE 416 (432)
T ss_pred CCCCCCCHHHHHHHHh-cCCCcEEEEeCCHHHHHHHHHHHHhCCeEEE
Confidence 6777777 66666655 6888999999888777766666777666543
No 481
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=93.21 E-value=0.065 Score=43.04 Aligned_cols=39 Identities=23% Similarity=0.564 Sum_probs=28.1
Q ss_pred CeeEEEecCcc----cccccC-hHHHHHHHHHhcCCCeEEEEEe
Q 015704 74 AFDLIHCSRCR----INWTRD-DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 74 sfDlI~s~~~~----~~~~~d-~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.||+|+|..+. ++|.++ ...+++.+++.|+|||.|++..
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 48999986542 223322 3679999999999999999994
No 482
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=92.69 E-value=0.48 Score=45.60 Aligned_cols=141 Identities=16% Similarity=0.283 Sum_probs=67.8
Q ss_pred ceEEeccccchHHHHHHhhcC----CCceEEEeccCC-CCCChhhHHh----cCc-cc---ccccCCCCCCC--CC--Cc
Q 015704 256 RNVLDMRAGFGGFAAALIEQK----FDCWVMNVVPVS-GFNTLPVIYD----RGL-IG---VMHDWCEPFDT--YP--RT 318 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~----~~~~~~~v~~~~-~~~~~~~~~~----rg~-~~---~~~~~~~~~~~--~~--~s 318 (402)
..|||-.||+|+|..+..++= ......++.+.| .+.++.++.- +|. .. ..+. ..+.. +. ..
T Consensus 48 ~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~--d~l~~~~~~~~~~ 125 (311)
T PF02384_consen 48 DSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQG--DSLENDKFIKNQK 125 (311)
T ss_dssp EEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES---TTTSHSCTST--
T ss_pred ceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccc--ccccccccccccc
Confidence 359999999999988876520 000123555555 3344444332 233 11 1111 11211 22 58
Q ss_pred ccEEEEccccccc-------c----------ccCCH-HHHHHHhhhhccCCcEEEEEeChhh------HHHHHHHHHhcC
Q 015704 319 YDLLHAAGLFSVE-------S----------KRCNM-STIMLEMDRMLRPGGHVYIRDSIDV------MDELQEIGKAMG 374 (402)
Q Consensus 319 fD~v~~~~~~~~~-------~----------~~~~~-~~~l~e~~RvLrpgG~~~~~~~~~~------~~~~~~~~~~~~ 374 (402)
||+|++.-=|... . ..... ...+..+.+.|||||.+++--+... ...+++.+-.-+
T Consensus 126 ~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll~~~ 205 (311)
T PF02384_consen 126 FDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLLENG 205 (311)
T ss_dssp EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHHHHE
T ss_pred cccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHHHhhc
Confidence 9999996443322 0 00011 1467779999999998655544322 345665443333
Q ss_pred c-eEEEeecC---CCCCCceEEEEEEec
Q 015704 375 W-HVTLRETA---EGPHASYRILTADKR 398 (402)
Q Consensus 375 w-~~~~~~~~---~~~~~~~~~l~~~k~ 398 (402)
+ +..+.-.. .+...+--+|+.+|.
T Consensus 206 ~i~aVI~Lp~~~F~~t~v~t~ilil~k~ 233 (311)
T PF02384_consen 206 YIEAVISLPSNLFKPTGVPTSILILNKK 233 (311)
T ss_dssp EEEEEEE--TTSSSSSSS-EEEEEEEES
T ss_pred hhhEEeecccceecccCcCceEEEEeec
Confidence 3 22222211 114455778888774
No 483
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=92.61 E-value=0.039 Score=47.91 Aligned_cols=88 Identities=17% Similarity=0.330 Sum_probs=42.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccc-cCCCCCCCCC-C-cccEEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMH-DWCEPFDTYP-R-TYDLLHA 324 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~-~~~~~~~~~~-~-sfD~v~~ 324 (402)
+.|+|+-||.||-+-++|.... .|.++| .+..++.+... |+ |..++ ++.+.+..+. + .||+|++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~-----~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD-----RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT------EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred CEEEEeccCcCHHHHHHHHhCC-----eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 3699999999999999999976 455554 23334333222 43 33444 2222222333 2 2899998
Q ss_pred cc-----------cccc--ccccCCHHHHHHHhhhhc
Q 015704 325 AG-----------LFSV--ESKRCNMSTIMLEMDRML 348 (402)
Q Consensus 325 ~~-----------~~~~--~~~~~~~~~~l~e~~RvL 348 (402)
+- +|.- .....+..+++..+.++-
T Consensus 76 SPPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t 112 (163)
T PF09445_consen 76 SPPWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKIT 112 (163)
T ss_dssp ---BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-
T ss_pred CCCCCCccccccCccCHHHccCCCCHHHHHHHHHhhC
Confidence 52 3322 111224556776666664
No 484
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=92.57 E-value=0.37 Score=45.15 Aligned_cols=101 Identities=14% Similarity=0.175 Sum_probs=49.1
Q ss_pred CCeEEEECCccc--hhHHHH----cc-CCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-------------CC
Q 015704 11 LRVVMDAGCGVA--SFGAYL----LP-RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-------------PY 70 (402)
Q Consensus 11 ~~~VLDiGcG~G--~~~~~L----~~-~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~l-------------p~ 70 (402)
....||||||-- ...-.+ .. .+|+-+|..+.-+..+..-..........+..+|+.+. .+
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 468999999943 222233 22 27888899886553332211111111133555553321 12
Q ss_pred CCCCeeEEEecCccccccc--ChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 71 PSQAFDLIHCSRCRINWTR--DDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 71 ~~~sfDlI~s~~~~~~~~~--d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+..+-+++ ..++++..+ ++..+++.+...|.||.+|+++..
T Consensus 149 -~rPVavll-~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 149 -DRPVAVLL-VAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp -TS--EEEE-CT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred -CCCeeeee-eeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 24455555 445444443 368999999999999999999964
No 485
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=92.56 E-value=0.62 Score=45.32 Aligned_cols=100 Identities=17% Similarity=0.104 Sum_probs=62.5
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHc---C-C-Cc--EEEeccccC-CCCCCCCeeE
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER---G-A-PA--MVAAFATRR-LPYPSQAFDL 77 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~---~-~-~~--~~~~~d~~~-lp~~~~sfDl 77 (402)
..++||-+|.|.|.-++.+.+. +++-+|++|.+++-+........ + . +. .+...|+-+ +.-..+.||.
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 4568999999999988888875 67888888877755442221111 1 1 11 233333221 2223468999
Q ss_pred EEecCcccccccCh-------HHHHHHHHHhcCCCeEEEEEe
Q 015704 78 IHCSRCRINWTRDD-------GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 78 I~s~~~~~~~~~d~-------~~~l~e~~r~LkpgG~li~~~ 112 (402)
|+.-.. -+.++ ..+..-+.|.|+++|.+++..
T Consensus 369 vIVDl~---DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 369 VIVDLP---DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred EEEeCC---CCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 995321 11111 356777889999999999974
No 486
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=92.52 E-value=0.31 Score=43.29 Aligned_cols=109 Identities=23% Similarity=0.240 Sum_probs=63.1
Q ss_pred HHHHhcccCCCCcceEEeccccchHHHHHHhhcCC-CceEEEeccCCCCCChhhHHhcCc-ccccccCCCCCCCCCCccc
Q 015704 243 SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKF-DCWVMNVVPVSGFNTLPVIYDRGL-IGVMHDWCEPFDTYPRTYD 320 (402)
Q Consensus 243 ~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~-~~~~~~v~~~~~~~~~~~~~~rg~-~~~~~~~~~~~~~~~~sfD 320 (402)
+|...- ...-+=++|||+|+|+|--+-+-+..|+ .|+..++.|....+.---+...|+ +...|..+ ..-|..||
T Consensus 69 R~i~~~-PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~---~g~~~~~D 144 (218)
T COG3897 69 RYIDDH-PETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADL---IGSPPAFD 144 (218)
T ss_pred HHHhcC-ccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccc---cCCCccee
Confidence 675432 2333456799999999976655555543 223444444332222222233354 66666533 33248999
Q ss_pred EEEEccccc-cccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 321 LLHAAGLFS-VESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 321 ~v~~~~~~~-~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
+|.++.+|- |-. -..++.=.+|+...|-.+++=|+
T Consensus 145 l~LagDlfy~~~~----a~~l~~~~~~l~~~g~~vlvgdp 180 (218)
T COG3897 145 LLLAGDLFYNHTE----ADRLIPWKDRLAEAGAAVLVGDP 180 (218)
T ss_pred EEEeeceecCchH----HHHHHHHHHHHHhCCCEEEEeCC
Confidence 999998884 322 24666656667777777777664
No 487
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=92.34 E-value=0.13 Score=51.09 Aligned_cols=90 Identities=13% Similarity=0.132 Sum_probs=56.9
Q ss_pred eEEeccccchHHHHHHhhc--CCCceEEEeccCC-CCCChhhHHh----cCc--ccccccCCCCCCCC-CCcccEEEEcc
Q 015704 257 NVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMHDWCEPFDTY-PRTYDLLHAAG 326 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~--~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~~~~~~~~~~-~~sfD~v~~~~ 326 (402)
+|||+-||+|.++-.++.+ |+ -.|+.+| ++..++.+.+ .++ +..++.-...+... ...||+|...-
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga----~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP 122 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGV----REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP 122 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCC----CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC
Confidence 4999999999999999987 32 1445555 3334433322 122 22333222111111 25799999973
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
+ -.+...|...-+.+++||++.++
T Consensus 123 -f------Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 123 -F------GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred -C------CCcHHHHHHHHHhcccCCEEEEE
Confidence 2 12358899999999999999999
No 488
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=92.30 E-value=0.36 Score=40.75 Aligned_cols=94 Identities=14% Similarity=0.163 Sum_probs=59.6
Q ss_pred ccccccCCCCCCCCC-C-cccEEEEcccccccccc--C---CH---HHHHHHhhhhccCCcEEEEEe------ChhhHHH
Q 015704 302 IGVMHDWCEPFDTYP-R-TYDLLHAAGLFSVESKR--C---NM---STIMLEMDRMLRPGGHVYIRD------SIDVMDE 365 (402)
Q Consensus 302 ~~~~~~~~~~~~~~~-~-sfD~v~~~~~~~~~~~~--~---~~---~~~l~e~~RvLrpgG~~~~~~------~~~~~~~ 365 (402)
+..+|+.=|.+..|- . .+|++... |-||+.. . .+ ..+|....++|+|||.+++.- ..+..+.
T Consensus 28 v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~a 105 (140)
T PF06962_consen 28 VTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEA 105 (140)
T ss_dssp EEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHH
T ss_pred EEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHH
Confidence 444555545556653 4 89998887 5666521 1 11 278888899999999999982 3466777
Q ss_pred HHHHHHhc---CceEEEeecCCCCCCceEEEEEEe
Q 015704 366 LQEIGKAM---GWHVTLRETAEGPHASYRILTADK 397 (402)
Q Consensus 366 ~~~~~~~~---~w~~~~~~~~~~~~~~~~~l~~~k 397 (402)
+.+.+.++ .|++...+-.+-...|..+++.+|
T Consensus 106 v~~~~~~L~~~~~~V~~~~~~N~~~~pp~l~~ieK 140 (140)
T PF06962_consen 106 VEEFLASLDQKEFNVLKYQFINQKNNPPLLVIIEK 140 (140)
T ss_dssp HHHHHHTS-TTTEEEEEEEESS-SS---EEEEEEE
T ss_pred HHHHHHhCCcceEEEEEEEccCCCCCCCEEEEEEC
Confidence 77777665 678888877776667777777665
No 489
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=91.84 E-value=0.25 Score=41.46 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=27.9
Q ss_pred eEEEECCccchhHHHHccC----CceEEeCCccchHHHH
Q 015704 13 VVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQ 47 (402)
Q Consensus 13 ~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~ 47 (402)
+++|+|||.|.++..++.. .++++|.++......+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~ 39 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILE 39 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHH
Confidence 4899999999988877754 5899999987765444
No 490
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=91.71 E-value=0.42 Score=49.74 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=28.2
Q ss_pred cceEEeccccchHHHHHHhhcCCC-----ceEEEeccCC-CCCChhhHH
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFD-----CWVMNVVPVS-GFNTLPVIY 297 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~-----~~~~~v~~~~-~~~~~~~~~ 297 (402)
..+|||.+||+|+|...++++... ....++...| .+..+..+.
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~ 80 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAK 80 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHH
Confidence 346999999999999998765311 1235666666 344554443
No 491
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=91.66 E-value=0.93 Score=42.13 Aligned_cols=38 Identities=24% Similarity=0.176 Sum_probs=30.9
Q ss_pred eeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 75 FDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 75 fDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
||+|+++.++++ ...+..+..-++..|..+|.+++.++
T Consensus 163 ~DlilasDvvy~-~~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 163 FDLILASDVVYE-EESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred ccEEEEeeeeec-CCcchhHHHHHHHHHhcCCeEEEEEe
Confidence 999999988554 33678899999999999997777764
No 492
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=91.60 E-value=0.57 Score=46.18 Aligned_cols=108 Identities=23% Similarity=0.239 Sum_probs=61.4
Q ss_pred hcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCCh---hhHHhc-Ccc--cccccCCCCCCC-CC-C
Q 015704 247 ALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTL---PVIYDR-GLI--GVMHDWCEPFDT-YP-R 317 (402)
Q Consensus 247 ~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~---~~~~~r-g~~--~~~~~~~~~~~~-~~-~ 317 (402)
.+....| -.|||+-+++|+=+.+|++...+ ....|++.| +..-+ .....| |+. ...+.-...++. ++ .
T Consensus 151 ~L~p~pg--e~VlD~cAAPGGKTthla~~~~~-~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~ 227 (355)
T COG0144 151 VLDPKPG--ERVLDLCAAPGGKTTHLAELMEN-EGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGG 227 (355)
T ss_pred HcCCCCc--CEEEEECCCCCCHHHHHHHhcCC-CCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccccc
Confidence 3445555 45999999999988888877431 122367777 33333 333333 542 222211112222 23 2
Q ss_pred -cccEEEEc------ccccc---ccc---cCCH-------HHHHHHhhhhccCCcEEEEE
Q 015704 318 -TYDLLHAA------GLFSV---ESK---RCNM-------STIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 318 -sfD~v~~~------~~~~~---~~~---~~~~-------~~~l~e~~RvLrpgG~~~~~ 357 (402)
.||-|... +++.- ... ..++ ..+|....++|||||.++.+
T Consensus 228 ~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYS 287 (355)
T COG0144 228 EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYS 287 (355)
T ss_pred CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 49999862 33311 000 0011 17888899999999999999
No 493
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=91.57 E-value=0.19 Score=47.91 Aligned_cols=113 Identities=17% Similarity=0.230 Sum_probs=60.6
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhc----Ccc-cccccCCCCCCCC------CCcccEEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR----GLI-GVMHDWCEPFDTY------PRTYDLLHA 324 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~r----g~~-~~~~~~~~~~~~~------~~sfD~v~~ 324 (402)
++|||+=|-+|+|+.+.+..|+. .|++|.. +...++.+.+. |+- ..+.-.+++...| ...||+|++
T Consensus 125 krvLnlFsYTGgfsv~Aa~gGA~-~v~~VD~--S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAAGGAK-EVVSVDS--SKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CEEEEET-TTTHHHHHHHHTTES-EEEEEES---HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CceEEecCCCCHHHHHHHHCCCC-EEEEEeC--CHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 46999999999999998888862 3344433 33444433332 431 1111111111111 258999988
Q ss_pred c------cccccccccCCHHHHHHHhhhhccCCcEEEEEeC------hhhHHHHHHHHHhcC
Q 015704 325 A------GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS------IDVMDELQEIGKAMG 374 (402)
Q Consensus 325 ~------~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~------~~~~~~~~~~~~~~~ 374 (402)
. +-+.- . .+...++.-..++|+|||.+++... ....+.++.....+.
T Consensus 202 DPPsF~k~~~~~-~--~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a~~~~ 260 (286)
T PF10672_consen 202 DPPSFAKSKFDL-E--RDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAAREVE 260 (286)
T ss_dssp --SSEESSTCEH-H--HHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHHHHCE
T ss_pred CCCCCCCCHHHH-H--HHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhCccce
Confidence 4 11111 1 1345778888899999999987743 233445555554433
No 494
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=91.01 E-value=0.44 Score=40.25 Aligned_cols=22 Identities=27% Similarity=0.381 Sum_probs=19.7
Q ss_pred CCcceEEeccccchHHHHHHhh
Q 015704 253 MKLRNVLDMRAGFGGFAAALIE 274 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~ 274 (402)
.+...|+|+|||-|.++..|+.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHH
Confidence 4567799999999999999998
No 495
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=90.25 E-value=0.3 Score=40.92 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=25.0
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS 288 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~ 288 (402)
+|||+|||.|.++..++..+....+..+.|..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~ 32 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLP 32 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCH
Confidence 38999999999999999887643456666654
No 496
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=89.78 E-value=0.73 Score=44.82 Aligned_cols=93 Identities=16% Similarity=0.187 Sum_probs=62.7
Q ss_pred cCCCCcceEEeccccchHHHHHHhh-cCCCceEEEeccCC-CCCChhhHHhcCcccccccCC-CCCCCCCCcccEEEEcc
Q 015704 250 WKKMKLRNVLDMRAGFGGFAAALIE-QKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWC-EPFDTYPRTYDLLHAAG 326 (402)
Q Consensus 250 ~~~~~~~~vLD~g~g~G~~~~~l~~-~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~-~~~~~~~~sfD~v~~~~ 326 (402)
...|.-=.|.=+| |.|..+..+++ .|+ .|++++ +++.++.+.+-|.--.+.... +........||+|+.-
T Consensus 164 ~~pG~~V~I~G~G-GlGh~avQ~Aka~ga-----~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~t- 236 (339)
T COG1064 164 VKPGKWVAVVGAG-GLGHMAVQYAKAMGA-----EVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDT- 236 (339)
T ss_pred CCCCCEEEEECCc-HHHHHHHHHHHHcCC-----eEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEEC-
Confidence 4445444466666 78888888888 566 777777 567788888877733333221 1112223459998877
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
. . ...+...-+.||+||.+++--
T Consensus 237 -------v-~-~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 237 -------V-G-PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred -------C-C-hhhHHHHHHHHhcCCEEEEEC
Confidence 2 2 578888999999999999974
No 497
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=89.77 E-value=0.25 Score=39.52 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=20.9
Q ss_pred CCCeEEEECCccchhHHHHccCCceEE
Q 015704 10 LLRVVMDAGCGVASFGAYLLPRNVITM 36 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~~v~~v 36 (402)
+....+|+|||+|.+.-.|.+.++.|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~ 84 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPGW 84 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCcc
Confidence 456899999999998877777654443
No 498
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=89.42 E-value=0.045 Score=43.69 Aligned_cols=96 Identities=19% Similarity=0.200 Sum_probs=33.2
Q ss_pred EeccccchHHHHHHhhc---CCCceEEEeccCCC-CCChhhHHhcCc---ccccccCC-CCCCCCC-CcccEEEEccccc
Q 015704 259 LDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYDRGL---IGVMHDWC-EPFDTYP-RTYDLLHAAGLFS 329 (402)
Q Consensus 259 LD~g~g~G~~~~~l~~~---~~~~~~~~v~~~~~-~~~~~~~~~rg~---~~~~~~~~-~~~~~~~-~sfD~v~~~~~~~ 329 (402)
|++|+..|..+..|++. +....+..|.+... +...+...+.++ +..+.... +.++.++ .+||+++-.. .
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg--~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG--D 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC--C
Confidence 57899999888777653 11012334444331 122333333333 33333222 1233456 7999999873 3
Q ss_pred cccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 330 VESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
|.. .....-+..+.+.|+|||.+++-|
T Consensus 79 H~~--~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSY--EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --H--HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCH--HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 322 123467777889999999999865
No 499
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=89.17 E-value=12 Score=34.67 Aligned_cols=172 Identities=12% Similarity=0.121 Sum_probs=73.1
Q ss_pred CCCCeEEEECCccc-hhHHHHcc--CCceEEeCCccchHHHHHHHHHHcCCCcEEEeccc-cCCCCC-CCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVA-SFGAYLLP--RNVITMSIAPKDVHENQIQFALERGAPAMVAAFAT-RRLPYP-SQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G-~~~~~L~~--~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~-~~lp~~-~~sfDlI~s~~~ 83 (402)
-.+++||-+|=..- +++..+.. .+++.+|++...+ ....+.|++.+++......|. ..+|-. .++||++++...
T Consensus 43 L~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll-~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 43 LEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLL-DFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHH-HHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---
T ss_pred ccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHH-HHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC
Confidence 36789999985543 34444433 3788999987554 333467778888866666563 233321 378999997543
Q ss_pred ccccccChHHHHHHHHHhcCCCe-EEEEEeCCCCCChHHHHHHHHHHHhhhhhcceeeeeccceEEEeecCCChhhhhhh
Q 015704 84 RINWTRDDGILLLEVNRMLRAGG-YFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNR 162 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG-~li~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 162 (402)
.. .+...-++.+....||..| ..+++......+ ...|.++......+++..-.--.....|.- .+...-.
T Consensus 122 -yT-~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s----~~~~~~~Q~~l~~~gl~i~dii~~Fn~Y~g--a~~i~~~- 192 (243)
T PF01861_consen 122 -YT-PEGLKLFLSRGIEALKGEGCAGYFGFTHKEAS----PDKWLEVQRFLLEMGLVITDIIPDFNRYEG--AEIIGNT- 192 (243)
T ss_dssp -SS-HHHHHHHHHHHHHTB-STT-EEEEEE-TTT------HHHHHHHHHHHHTS--EEEEEEEEEEEB-----S-GGGS-
T ss_pred -CC-HHHHHHHHHHHHHHhCCCCceEEEEEecCcCc----HHHHHHHHHHHHHCCcCHHHHHhhhccccc--chhhccc-
Confidence 11 1234678899999998766 445542111111 334555555444444433221111222221 1111100
Q ss_pred hcCCCCCCCCCCCCCCCcccccccceeecCC
Q 015704 163 EAGTIPPLCDPDDNPDNVWYVDLKACITRLP 193 (402)
Q Consensus 163 ~aGf~~~~~~~~~~~~~~~y~~~~~~l~~l~ 193 (402)
.+. ........+...||.+..--++-++
T Consensus 193 --~~~-~~l~v~~~~~~~~y~s~~~rie~~~ 220 (243)
T PF01861_consen 193 --RFW-QVLPVKKRPEKIWYRSTMPRIETVR 220 (243)
T ss_dssp --HHH-HHSSS----SS---EEEEEEEE--T
T ss_pred --cee-EEeccccccccccccceeEEEEEec
Confidence 000 0111234677889999888887776
No 500
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=89.17 E-value=0.25 Score=43.84 Aligned_cols=97 Identities=20% Similarity=0.281 Sum_probs=52.6
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCCC-CCChhhHHhc----Cccc---ccc-cCCCCCCCC--C-CcccEEEE
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GLIG---VMH-DWCEPFDTY--P-RTYDLLHA 324 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~-~~~~~~~~~r----g~~~---~~~-~~~~~~~~~--~-~sfD~v~~ 324 (402)
.|||+=||+|.++-...+||+. .|+-+|. ...++.+.+. ++-. .+. +....+... . ..||+|++
T Consensus 45 ~vLDLFaGSGalGlEALSRGA~----~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 45 RVLDLFAGSGALGLEALSRGAK----SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp EEEETT-TTSHHHHHHHHTT-S----EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred eEEEcCCccCccHHHHHhcCCC----eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 3999999999999999999973 4555552 2333222211 2211 111 111112112 3 79999999
Q ss_pred ccccccccccCCHHHHHHHhh--hhccCCcEEEEEeCh
Q 015704 325 AGLFSVESKRCNMSTIMLEMD--RMLRPGGHVYIRDSI 360 (402)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~e~~--RvLrpgG~~~~~~~~ 360 (402)
.==+..-. .+..+|.-+. .+|+|+|.+|+-...
T Consensus 121 DPPY~~~~---~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 121 DPPYAKGL---YYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp --STTSCH---HHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred CCCcccch---HHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 72111110 0255666665 899999999997543
Done!