Query 015705
Match_columns 402
No_of_seqs 151 out of 718
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 08:48:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015705.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015705hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02405 hexokinase 100.0 3E-115 6E-120 906.3 37.2 373 1-373 1-373 (497)
2 PLN02596 hexokinase-like 100.0 1E-113 3E-118 891.4 35.5 371 1-373 2-373 (490)
3 PLN02362 hexokinase 100.0 3E-113 6E-118 893.4 35.3 377 1-378 1-377 (509)
4 PLN02914 hexokinase 100.0 1E-108 3E-113 854.5 34.4 338 36-374 36-373 (490)
5 KOG1369 Hexokinase [Carbohydra 100.0 4E-100 8E-105 782.1 28.4 343 25-375 15-361 (474)
6 PTZ00107 hexokinase; Provision 100.0 2.2E-98 5E-103 775.6 32.2 322 35-374 5-353 (464)
7 COG5026 Hexokinase [Carbohydra 100.0 1.3E-88 2.9E-93 682.9 28.0 353 33-390 13-375 (466)
8 PF00349 Hexokinase_1: Hexokin 100.0 8.4E-63 1.8E-67 463.1 21.9 202 36-242 2-206 (206)
9 PF03727 Hexokinase_2: Hexokin 100.0 7.6E-42 1.7E-46 328.0 9.6 142 244-388 1-150 (243)
10 PRK09698 D-allose kinase; Prov 98.6 1.8E-06 3.9E-11 84.7 16.6 163 94-282 3-168 (302)
11 PRK13311 N-acetyl-D-glucosamin 98.3 2.2E-05 4.7E-10 75.8 16.6 138 97-264 2-143 (256)
12 PRK12408 glucokinase; Provisio 98.2 2.2E-05 4.9E-10 79.0 13.2 192 90-330 10-220 (336)
13 TIGR00744 ROK_glcA_fam ROK fam 98.1 9.6E-05 2.1E-09 72.9 16.3 137 98-263 1-143 (318)
14 PRK13310 N-acetyl-D-glucosamin 98.1 8.2E-05 1.8E-09 73.1 15.5 138 97-264 2-143 (303)
15 COG1940 NagC Transcriptional r 98.1 8.4E-05 1.8E-09 73.3 14.7 165 93-286 4-175 (314)
16 PF00480 ROK: ROK family; Int 98.1 6.1E-05 1.3E-09 67.9 12.5 132 99-262 1-136 (179)
17 PRK09557 fructokinase; Reviewe 98.0 0.00022 4.8E-09 70.1 15.9 136 97-262 2-141 (301)
18 PRK05082 N-acetylmannosamine k 97.9 0.00045 9.7E-09 67.6 15.7 136 97-263 3-141 (291)
19 PTZ00288 glucokinase 1; Provis 97.9 0.00047 1E-08 71.6 16.3 222 60-330 6-272 (405)
20 PRK14101 bifunctional glucokin 97.8 0.00015 3.2E-09 79.1 12.0 186 94-330 17-217 (638)
21 PRK00292 glk glucokinase; Prov 97.7 0.00063 1.4E-08 67.6 14.0 180 97-329 4-201 (316)
22 TIGR00749 glk glucokinase, pro 97.4 0.00082 1.8E-08 66.9 9.9 185 98-331 1-203 (316)
23 smart00732 YqgFc Likely ribonu 97.2 0.002 4.3E-08 52.6 8.4 48 96-153 2-49 (99)
24 PF02685 Glucokinase: Glucokin 96.9 0.003 6.5E-08 63.6 8.0 184 98-329 1-201 (316)
25 PF01869 BcrAD_BadFG: BadF/Bad 96.0 0.096 2.1E-06 50.7 12.2 137 98-288 1-137 (271)
26 PF00370 FGGY_N: FGGY family o 95.5 0.062 1.3E-06 51.1 8.6 59 97-158 2-63 (245)
27 KOG1794 N-Acetylglucosamine ki 95.3 0.15 3.2E-06 51.1 10.5 158 94-287 2-176 (336)
28 PRK13318 pantothenate kinase; 94.1 0.62 1.3E-05 45.2 11.4 96 233-337 113-211 (258)
29 TIGR01315 5C_CHO_kinase FGGY-f 93.0 0.35 7.7E-06 51.9 8.4 60 97-159 2-64 (541)
30 TIGR01314 gntK_FGGY gluconate 92.8 0.37 8.1E-06 51.1 8.1 60 97-159 2-64 (505)
31 COG2971 Predicted N-acetylgluc 92.7 1.1 2.4E-05 45.1 10.6 122 96-255 6-128 (301)
32 TIGR01311 glycerol_kin glycero 92.5 0.37 8.1E-06 50.9 7.6 60 97-159 3-65 (493)
33 PRK10939 autoinducer-2 (AI-2) 92.2 0.53 1.2E-05 50.2 8.4 61 96-159 4-69 (520)
34 PRK00047 glpK glycerol kinase; 91.9 0.45 9.7E-06 50.4 7.3 61 96-159 6-69 (498)
35 PRK15027 xylulokinase; Provisi 91.6 0.61 1.3E-05 49.2 8.0 59 97-158 2-63 (484)
36 TIGR01234 L-ribulokinase L-rib 91.5 0.65 1.4E-05 49.7 8.2 60 97-159 3-77 (536)
37 PRK10331 L-fuculokinase; Provi 90.8 0.96 2.1E-05 47.5 8.5 60 96-158 3-67 (470)
38 TIGR01312 XylB D-xylulose kina 90.7 0.61 1.3E-05 48.7 6.9 60 98-160 1-63 (481)
39 PTZ00294 glycerol kinase-like 90.5 0.95 2.1E-05 48.1 8.2 61 96-159 3-66 (504)
40 COG1070 XylB Sugar (pentulose 90.5 0.77 1.7E-05 48.9 7.5 61 96-158 5-68 (502)
41 TIGR02628 fuculo_kin_coli L-fu 89.4 1.3 2.8E-05 46.6 8.0 58 97-157 3-65 (465)
42 PLN02295 glycerol kinase 89.4 1.2 2.6E-05 47.4 7.9 61 97-160 2-65 (512)
43 PRK04123 ribulokinase; Provisi 87.2 2.5 5.4E-05 45.3 8.6 61 96-159 4-74 (548)
44 TIGR01174 ftsA cell division p 86.4 28 0.00062 35.3 15.4 133 97-240 2-190 (371)
45 PRK13321 pantothenate kinase; 86.2 1.8 3.9E-05 42.0 6.3 17 97-113 2-18 (256)
46 TIGR01175 pilM type IV pilus a 83.0 15 0.00033 36.6 11.5 101 96-217 4-106 (348)
47 PRK15080 ethanolamine utilizat 82.5 13 0.00028 36.4 10.5 115 89-238 18-132 (267)
48 TIGR02627 rhamnulo_kin rhamnul 81.0 2.8 6E-05 43.9 5.6 59 98-156 1-63 (454)
49 PRK13410 molecular chaperone D 79.7 5.5 0.00012 44.3 7.6 19 95-113 2-20 (668)
50 CHL00094 dnaK heat shock prote 77.1 7.1 0.00015 42.8 7.5 18 96-113 3-20 (621)
51 COG0837 Glk Glucokinase [Carbo 75.0 33 0.00072 34.9 10.8 102 217-331 91-207 (320)
52 PRK13324 pantothenate kinase; 73.1 23 0.00049 34.9 9.1 46 97-150 2-47 (258)
53 PTZ00400 DnaK-type molecular c 72.5 12 0.00025 41.6 7.7 19 95-113 41-59 (663)
54 TIGR00671 baf pantothenate kin 72.3 37 0.00081 32.9 10.4 43 98-149 2-44 (243)
55 PTZ00186 heat shock 70 kDa pre 71.1 19 0.0004 40.1 8.9 41 222-262 188-230 (657)
56 KOG2517 Ribulose kinase and re 71.1 32 0.0007 37.3 10.3 97 94-201 5-103 (516)
57 PRK05183 hscA chaperone protei 68.7 11 0.00024 41.5 6.4 20 94-113 18-37 (616)
58 PRK00290 dnaK molecular chaper 67.7 10 0.00022 41.6 5.9 18 96-113 3-20 (627)
59 PLN03184 chloroplast Hsp70; Pr 67.0 19 0.00041 40.1 7.9 18 96-113 40-57 (673)
60 PRK13320 pantothenate kinase; 66.5 40 0.00088 32.7 9.2 31 307-337 169-201 (244)
61 COG1069 AraB Ribulose kinase [ 64.1 23 0.00051 38.4 7.6 98 96-199 4-103 (544)
62 TIGR00241 CoA_E_activ CoA-subs 62.7 25 0.00054 33.7 7.0 48 97-159 2-49 (248)
63 COG0554 GlpK Glycerol kinase [ 62.6 25 0.00054 37.8 7.3 87 95-195 5-92 (499)
64 PTZ00009 heat shock 70 kDa pro 61.6 47 0.001 36.8 9.7 41 222-262 168-212 (653)
65 PLN02669 xylulokinase 60.9 22 0.00047 38.7 6.8 63 87-155 3-81 (556)
66 PRK13411 molecular chaperone D 54.1 46 0.001 36.9 8.1 19 95-113 2-20 (653)
67 TIGR00904 mreB cell shape dete 52.6 2.2E+02 0.0048 28.3 12.1 48 208-257 114-161 (333)
68 PF00012 HSP70: Hsp70 protein; 51.4 26 0.00057 37.5 5.5 149 97-254 1-196 (602)
69 smart00842 FtsA Cell division 48.7 75 0.0016 29.0 7.4 58 97-158 1-59 (187)
70 PRK13929 rod-share determining 48.0 3E+02 0.0065 27.6 12.2 46 210-257 116-161 (335)
71 PRK03657 hypothetical protein; 47.5 68 0.0015 29.7 6.9 68 47-116 70-145 (170)
72 PRK13322 pantothenate kinase; 47.2 61 0.0013 31.5 6.9 44 197-242 51-95 (246)
73 TIGR02350 prok_dnaK chaperone 47.1 37 0.00079 37.0 5.8 17 97-113 2-18 (595)
74 COG4972 PilM Tfp pilus assembl 46.7 1.1E+02 0.0024 31.5 8.7 130 96-227 11-170 (354)
75 TIGR02707 butyr_kinase butyrat 45.5 43 0.00094 34.4 5.8 56 97-160 2-61 (351)
76 TIGR01991 HscA Fe-S protein as 42.0 55 0.0012 35.9 6.2 16 98-113 2-17 (599)
77 COG5146 PanK Pantothenate kina 40.0 1.1E+02 0.0023 30.6 7.1 173 97-304 20-199 (342)
78 PRK11677 hypothetical protein; 38.1 56 0.0012 29.3 4.5 20 9-28 6-25 (134)
79 TIGR02529 EutJ ethanolamine ut 37.6 2.8E+02 0.006 26.6 9.7 27 209-237 78-104 (239)
80 PF11104 PilM_2: Type IV pilus 35.8 1.3E+02 0.0029 30.1 7.5 60 99-160 1-60 (340)
81 PF06295 DUF1043: Protein of u 35.0 77 0.0017 27.8 4.9 34 10-43 3-36 (128)
82 TIGR03706 exo_poly_only exopol 34.9 1.5E+02 0.0032 29.4 7.5 62 97-158 2-65 (300)
83 PF05402 PqqD: Coenzyme PQQ sy 33.9 89 0.0019 23.5 4.6 34 35-68 30-63 (68)
84 PRK13411 molecular chaperone D 32.9 1.1E+02 0.0025 33.9 6.9 24 93-116 184-207 (653)
85 KOG3127 Deoxycytidylate deamin 32.3 27 0.00058 33.9 1.7 26 232-257 73-106 (230)
86 PRK13717 conjugal transfer pro 31.5 35 0.00075 30.4 2.1 54 18-72 34-90 (128)
87 COG3734 DgoK 2-keto-3-deoxy-ga 29.8 44 0.00096 33.7 2.8 22 94-115 4-25 (306)
88 PF11215 DUF3010: Protein of u 29.6 1.3E+02 0.0029 27.1 5.5 61 97-161 3-63 (138)
89 PF14574 DUF4445: Domain of un 29.3 1E+02 0.0023 32.5 5.6 18 98-115 4-21 (412)
90 PRK10854 exopolyphosphatase; P 29.3 2.8E+02 0.006 29.9 9.0 62 96-157 12-75 (513)
91 TIGR03123 one_C_unchar_1 proba 29.1 40 0.00087 34.3 2.4 20 94-113 127-146 (318)
92 PRK13326 pantothenate kinase; 28.2 4.1E+02 0.0088 26.2 9.2 45 96-149 7-51 (262)
93 PF02419 PsbL: PsbL protein; 27.8 58 0.0013 22.9 2.3 31 306-336 2-32 (37)
94 TIGR02350 prok_dnaK chaperone 27.2 1.8E+02 0.0039 31.6 7.2 23 94-116 182-204 (595)
95 PRK10753 transcriptional regul 27.1 1.5E+02 0.0032 24.3 5.1 36 38-73 4-39 (90)
96 PRK11031 guanosine pentaphosph 27.0 2.1E+02 0.0045 30.7 7.5 63 96-158 7-71 (496)
97 PRK01433 hscA chaperone protei 26.8 1.3E+02 0.0028 33.1 6.1 24 93-116 191-214 (595)
98 PRK01433 hscA chaperone protei 26.2 2E+02 0.0043 31.7 7.3 19 95-113 19-37 (595)
99 PTZ00186 heat shock 70 kDa pre 26.0 1.9E+02 0.004 32.4 7.1 23 94-116 211-233 (657)
100 TIGR00987 himA integration hos 25.8 1.6E+02 0.0035 24.2 5.1 36 38-73 5-40 (96)
101 COG0443 DnaK Molecular chapero 25.4 1.7E+02 0.0038 32.1 6.7 145 95-254 5-180 (579)
102 PRK13410 molecular chaperone D 24.5 2.1E+02 0.0046 32.0 7.2 23 94-116 186-208 (668)
103 PRK00285 ihfA integration host 24.2 1.6E+02 0.0035 24.2 4.8 36 38-73 6-41 (99)
104 PRK00290 dnaK molecular chaper 24.1 2E+02 0.0043 31.7 6.9 23 94-116 184-206 (627)
105 CHL00094 dnaK heat shock prote 23.8 2.2E+02 0.0048 31.3 7.2 22 95-116 187-208 (621)
106 COG1546 CinA Uncharacterized p 23.8 3.3E+02 0.0071 25.2 7.1 69 47-117 64-140 (162)
107 PRK00753 psbL photosystem II r 23.7 94 0.002 22.0 2.7 32 306-337 4-35 (39)
108 PF01968 Hydantoinase_A: Hydan 23.4 76 0.0016 31.5 3.2 18 96-113 78-95 (290)
109 PF13941 MutL: MutL protein 23.4 95 0.0021 33.3 4.1 29 96-124 1-29 (457)
110 PF00216 Bac_DNA_binding: Bact 22.7 1.9E+02 0.0042 22.8 4.9 36 38-73 4-39 (90)
111 smart00411 BHL bacterial (prok 22.5 1.9E+02 0.0041 22.9 4.9 36 38-73 4-39 (90)
112 PRK09472 ftsA cell division pr 22.1 3.4E+02 0.0073 28.3 7.8 59 96-157 9-67 (420)
113 TIGR00555 panK_eukar pantothen 22.0 2E+02 0.0044 28.7 5.9 17 97-113 2-18 (279)
114 PF04459 DUF512: Protein of un 21.7 54 0.0012 31.3 1.6 27 204-230 105-135 (204)
115 PRK10664 transcriptional regul 21.6 2.2E+02 0.0049 23.3 5.1 36 39-74 5-40 (90)
116 PF09907 DUF2136: Uncharacteri 20.7 1.1E+02 0.0023 24.7 2.9 20 95-114 36-56 (76)
No 1
>PLN02405 hexokinase
Probab=100.00 E-value=2.6e-115 Score=906.27 Aligned_cols=373 Identities=85% Similarity=1.289 Sum_probs=350.0
Q ss_pred CCceeEEEeeehhhhhhhhhhhhhhhhccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCCCccee
Q 015705 1 MGKVTVAATVVCAAAVCAAAALVVRRRMKSTGRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKM 80 (402)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~M 80 (402)
|+|+.++++++|+|++|++++..++++.+++.+|..+.+++++|+++|.+|.++|++|+++|..||++||++++.|+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~v~~~f~~em~~GL~~~~~s~l~M 80 (497)
T PLN02405 1 MGKVAVGAAVVCAAAVCAAAALVVRRRMKSSGKWARAMEILKEFEEDCATPIGKLRQVADAMTVEMHAGLASEGGSKLKM 80 (497)
T ss_pred CCceeeehhhhhHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCcce
Confidence 89988999999999889999888888888778888899999999999999999999999999999999999876688999
Q ss_pred eeccccCCCCCCccccEEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHhcCC
Q 015705 81 LISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGE 160 (402)
Q Consensus 81 LPS~v~~lP~G~E~G~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~~ 160 (402)
|||||+++|+|+|+|+|||||||||||||++|+|.|++..+.++.+++++||+++|.+++++||||||+||++|+++++.
T Consensus 81 lpSyv~~lPtG~E~G~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~gt~~~LFdfIA~~i~~fl~~~~~ 160 (497)
T PLN02405 81 LISYVDNLPSGDEKGLFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSIPPHLMTGSSDALFDFIAAALAKFVATEGE 160 (497)
T ss_pred eccccccCCCCCcceeEEEEecCCceEEEEEEEEcCCCCceeEEEEEEeecChhhccCCHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999876666777778999999999999999999999999999998865
Q ss_pred CCCCCCCceeeeeeeeeeeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechhHhhhcccc
Q 015705 161 GFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY 240 (402)
Q Consensus 161 ~~~~~~~~~lpLGfTFSFP~~Q~~i~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~vvAIvNDTVaTLla~ay 240 (402)
+.+...++++||||||||||+|+++++|+|++|||||++++++|+||+++|++||+|++++|+|+||||||||||++++|
T Consensus 161 ~~~~~~~~~l~LGfTFSFPv~Qtsi~~g~Li~WTKGF~~~~~vG~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY 240 (497)
T PLN02405 161 DFHLPPGRQRELGFTFSFPVKQTSISSGTLIKWTKGFSIDDAVGQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRY 240 (497)
T ss_pred ccccCcccccccceeEeeeeccCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhc
Confidence 43222346799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEeecCeeeeeecccCCCCccCCCCCCCCcEEEEeccCCcCCCCCCCCccchhhcccCCCCCcceeeeeccc
Q 015705 241 HNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQIFEKIISG 320 (402)
Q Consensus 241 ~~~~~~iGlIlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~lD~~S~nPG~q~fEKmiSG 320 (402)
.+++|.||+|+|||||+||+|+.++|||+++..+..++||||||||+||.+++|+|+||+.+|++|.|||+|+|||||||
T Consensus 241 ~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG 320 (497)
T PLN02405 241 YNPDVVAAVILGTGTNAAYVERAQAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDHALDVESLNPGEQIFEKIISG 320 (497)
T ss_pred CCCCceEEEEEeCCeeeEEEeecccCccccccCCCCCeEEEEeccccCCCCCCCCchHHHHHhhcCCCCCcchhhHHHhh
Confidence 99999999999999999999999999999875556778999999999998889999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHccCCCCCCCCCCcCCCCcccchhHHHHhhcCCcchHH
Q 015705 321 MYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRCVFCAFALLLSNSVISS 373 (402)
Q Consensus 321 ~YLGEivRlill~l~~~~~lF~~~~~~~l~~~~~l~t~~ls~~~~~~~~~~~~ 373 (402)
||||||+|+||++|++++.||++..|++|.+||+|+|++||.|+.+..+.+..
T Consensus 321 ~YLGEivRlvLl~l~~~~~lF~g~~~~~L~~~~~l~T~~ls~i~~D~s~~l~~ 373 (497)
T PLN02405 321 MYLGEILRRVLLKMAEEAAFFGDTVPPKLKIPFILRTPDMSAMHHDTSPDLKV 373 (497)
T ss_pred ccHHHHHHHHHHHHHHhccccCCCCcHhhcCCCCcccHHHHHHhcCCCchHHH
Confidence 99999999999999999999999999999999999999999998876666653
No 2
>PLN02596 hexokinase-like
Probab=100.00 E-value=1.4e-113 Score=891.36 Aligned_cols=371 Identities=52% Similarity=0.856 Sum_probs=345.0
Q ss_pred CCceeEEEeeehhhhhhhhhhhhhhhhc-cccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCCCcce
Q 015705 1 MGKVTVAATVVCAAAVCAAAALVVRRRM-KSTGRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLK 79 (402)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~ 79 (402)
|+|+.++++++|++++|++| +.+++|. +++.+|+++++++++|+++|.+|.++|++|+++|.+||++||+++.+|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~ 80 (490)
T PLN02596 2 MRKEVVVAATVATVAAVAAA-VLMGRWKRRKERQWKHTQRILRKFARECATPVSKLWEVADALVSDMTASLTAEETTTLN 80 (490)
T ss_pred CcceeeehhHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCCc
Confidence 89999999999999989888 6666665 666799999999999999999999999999999999999999886667899
Q ss_pred eeeccccCCCCCCccccEEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHhcC
Q 015705 80 MLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEG 159 (402)
Q Consensus 80 MLPS~v~~lP~G~E~G~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~ 159 (402)
||||||+++|+|+|+|+|||||||||||||++|+|.|++..+.++.+++|+||++++.+++++||||||+||++|+++++
T Consensus 81 MlpTyv~~lPtG~E~G~yLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~~t~~eLFd~IA~~i~~fl~~~~ 160 (490)
T PLN02596 81 MLVSYVASLPSGDEKGLYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISIPSNVLNGTSQELFDYIALELAKFVAEHP 160 (490)
T ss_pred eecccCCCCCCCCcceEEEEEeeCCceEEEEEEEEcCCCCceEEEEEEEecCChHhhcCCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999887655677777899999999999999999999999999999876
Q ss_pred CCCCCCCCceeeeeeeeeeeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechhHhhhccc
Q 015705 160 EGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGR 239 (402)
Q Consensus 160 ~~~~~~~~~~lpLGfTFSFP~~Q~~i~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~vvAIvNDTVaTLla~a 239 (402)
.+.....++++||||||||||+|+++++|+|++| |||++++++|+||+++|++|++|++++|+|+||||||||||+|++
T Consensus 161 ~~~~~~~~~~l~lGfTFSFP~~Q~si~~G~Li~W-KgF~~~~~vG~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~a 239 (490)
T PLN02596 161 GDEADTPERVKKLGFTVSYPVDQAAASSGSAIKW-KSFSADDTVGKALVNDINRALEKHGLKIRVFALVDDTIGNLAGGR 239 (490)
T ss_pred cccccCcccccccceEEeeeeeecCCCCEEEEEe-ccccCCCccCcHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhh
Confidence 5432223467999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEeecCeeeeeecccCCCCccCCCCCCCCcEEEEeccCCcCCCCCCCCccchhhcccCCCCCcceeeeecc
Q 015705 240 YHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQIFEKIIS 319 (402)
Q Consensus 240 y~~~~~~iGlIlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~lD~~S~nPG~q~fEKmiS 319 (402)
|.+++|+||+|+|||||+||+|++++|+|+++..+..++||||||||+||...+|+|+||++||++|.|||+|+||||||
T Consensus 240 Y~~~~~~iG~I~GTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKMiS 319 (490)
T PLN02596 240 YYNKDTVAAVTLGMGTNAAYVEPAQAIPKWQSPSPESQEIVISTEWGNFNSCHLPITEFDASLDAESSNPGSRIFEKLTS 319 (490)
T ss_pred cCCCCeEEEEEEecccceEEEEEccccccccCCCCCCCeEEEEeccccCCCCCCCCChHHHHHhccCCCCCcchHHHHHh
Confidence 99999999999999999999999999999987656678899999999998777999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHccCCCCCCCCCCcCCCCcccchhHHHHhhcCCcchHH
Q 015705 320 GMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRCVFCAFALLLSNSVISS 373 (402)
Q Consensus 320 G~YLGEivRlill~l~~~~~lF~~~~~~~l~~~~~l~t~~ls~~~~~~~~~~~~ 373 (402)
|||||||+|+||++|++++.||++..|++|.+||+|+|++||.++.+..+.+..
T Consensus 320 G~YLGElvRlvl~~l~~~~~lF~~~~~~~L~~~~~l~T~~lS~i~~d~s~~~~~ 373 (490)
T PLN02596 320 GMYLGEIVRRVLLKMAEETALFGDTLPPKLTTPYLLRSPDMAAMHQDTSEDHEV 373 (490)
T ss_pred hhhHHHHHHHHHHHHHHhccccCCCCcHhhcCCCccccHHHHHHhcCCCchHHH
Confidence 999999999999999999999999999999999999999999998776666543
No 3
>PLN02362 hexokinase
Probab=100.00 E-value=2.6e-113 Score=893.39 Aligned_cols=377 Identities=61% Similarity=0.958 Sum_probs=348.5
Q ss_pred CCceeEEEeeehhhhhhhhhhhhhhhhccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCCCccee
Q 015705 1 MGKVTVAATVVCAAAVCAAAALVVRRRMKSTGRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKM 80 (402)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~M 80 (402)
|+|+.++++++|+++++++++..++++.++..+|+.+++++++|+++|.+|.++|++|+++|..||++||++++.|+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~v~~~f~~em~~GL~~~~~s~l~M 80 (509)
T PLN02362 1 MGKVAVGLAAAAAVAACAVAAVMVGRRVKSRRKWRRVVGVLKELEEACETPVGRLRQVVDAMAVEMHAGLASEGGSKLKM 80 (509)
T ss_pred CCceeeehhhhHHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCCce
Confidence 89999999999988888899888888888778888899999999999999999999999999999999999865688999
Q ss_pred eeccccCCCCCCccccEEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHhcCC
Q 015705 81 LISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGE 160 (402)
Q Consensus 81 LPS~v~~lP~G~E~G~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~~ 160 (402)
|||||+++|+|+|+|+|||||||||||||++|+|.|++.....+++++|+||+++|.+++++||||||+||++|+++++.
T Consensus 81 lPTyv~~lPtG~E~G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~~~~~eLFd~IA~~i~~fl~~~~~ 160 (509)
T PLN02362 81 LLTFVDDLPTGSEIGTYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHPIPQHLMNSTSEVLFDFIASSLKQFVEKEEN 160 (509)
T ss_pred ecCccCCCCCCCcceeEEEEecCCceEEEEEEEecCCCcceeeceeEEEecChhhccCCHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999877666666667899999999999999999999999999998865
Q ss_pred CCCCCCCceeeeeeeeeeeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechhHhhhcccc
Q 015705 161 GFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY 240 (402)
Q Consensus 161 ~~~~~~~~~lpLGfTFSFP~~Q~~i~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~vvAIvNDTVaTLla~ay 240 (402)
+.+...++++||||||||||+|+++++|+|++|||||++++++|+||+++|++||+|++++|+|+||||||||||++++|
T Consensus 161 ~~~~~~~~~l~LGfTFSFPv~Q~si~~g~Li~WtKGF~~~~v~G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY 240 (509)
T PLN02362 161 GSEFSQVRRRELGFTFSFPVKQTSISSGILIKWTKGFAISDMVGKDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHY 240 (509)
T ss_pred cccccccccccceeEEeeeeccCCCCceEEEEeccccccCcccCchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhc
Confidence 42222236799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEeecCeeeeeecccCCCCccCCCCCCCCcEEEEeccCCcCCCCCCCCccchhhcccCCCCCcceeeeeccc
Q 015705 241 HNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQIFEKIISG 320 (402)
Q Consensus 241 ~~~~~~iGlIlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~lD~~S~nPG~q~fEKmiSG 320 (402)
.+|+|.||+|+|||||+||+|+.++|+|+++..+..++||||||||+||.+++|+|+||..+|++|.|||+|+|||||||
T Consensus 241 ~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG 320 (509)
T PLN02362 241 HDPDTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGSMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKMISG 320 (509)
T ss_pred CCCCceEEEEEECCccceEeeehhhcccccccCCCCCcEEEEeeccCCCCCCCCCchHHHHHhcCCCCcCcchHHHHHhh
Confidence 99999999999999999999999999999876556778999999999998889999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHccCCCCCCCCCCcCCCCcccchhHHHHhhcCCcchHHHHHhh
Q 015705 321 MYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRCVFCAFALLLSNSVISSLYRNL 378 (402)
Q Consensus 321 ~YLGEivRlill~l~~~~~lF~~~~~~~l~~~~~l~t~~ls~~~~~~~~~~~~~~~~~ 378 (402)
||||||+|+||++|++++.||++ .|++|.+||+|+|++||+|+.+..+.+..+-..|
T Consensus 321 ~YLGEivRlvL~~l~~~~~lF~~-~~~~L~~~~~l~T~~ls~i~~d~s~~l~~~~~~l 377 (509)
T PLN02362 321 MYLGDIVRRVILRMSQESDIFGP-VSSRLSTPFVLRTPSVAAMHEDDSPELQEVARIL 377 (509)
T ss_pred ccHHHHHHHHHHHHHhccccccC-CcHhhcCCCccccHHHHHHhcCCChhHHHHHHHH
Confidence 99999999999999999999974 7889999999999999999876666665554444
No 4
>PLN02914 hexokinase
Probab=100.00 E-value=1.2e-108 Score=854.50 Aligned_cols=338 Identities=61% Similarity=1.010 Sum_probs=315.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCCCcceeeeccccCCCCCCccccEEEEEeCCceeEEEEEEEc
Q 015705 36 RAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLG 115 (402)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~MLPS~v~~lP~G~E~G~fLAlDlGGTNlRV~~V~L~ 115 (402)
++.+++++|+++|.+|.++|++|+++|.+||++||++++.|+++||||||+++|+|+|+|+|||||||||||||++|+|.
T Consensus 36 ~~~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~MlpTyv~~lPtG~E~G~fLAlDlGGTNfRV~~V~L~ 115 (490)
T PLN02914 36 SVAPILTKLQKDCATPLPVLRHVADAMAADMRAGLAVDGGGDLKMILSYVDSLPSGNEKGLFYALDLGGTNFRVLRVQLG 115 (490)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccCCCCCcceeccccCCCCCCCeeeEEEEEecCCceEEEEEEEec
Confidence 67889999999999999999999999999999999986568899999999999999999999999999999999999999
Q ss_pred CCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHhcCCCCCCCCCceeeeeeeeeeeeeeccCCceEEEeccc
Q 015705 116 GREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTK 195 (402)
Q Consensus 116 g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~lpLGfTFSFP~~Q~~i~~g~Li~wtK 195 (402)
|++..+.++.+++++||++++.+++++||||||+||++|++++..+.+.+.++.+||||||||||+|+++++|+|++|||
T Consensus 116 g~~~~~~~~~~~~~~ip~~l~~gt~~eLFdfIA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSFP~~Q~si~~g~Li~WTK 195 (490)
T PLN02914 116 GKDERVIATEFEQVSIPQELMFGTSEELFDFIASGLANFVAKEGGKFHLPEGRKREIGFTFSFPVKQTSIDSGILMKWTK 195 (490)
T ss_pred CCCCceeeeeEEEecCChhhccCCHHHHHHHHHHHHHHHHHhccccccCCccccccceeeEeeeeecCCCCceEEEEecc
Confidence 87666677777899999999999999999999999999999876432222346799999999999999999999999999
Q ss_pred ceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechhHhhhcccccCCCceEEEEeecCeeeeeecccCCCCccCCCCCC
Q 015705 196 GFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPK 275 (402)
Q Consensus 196 gF~~~~v~G~Dv~~lL~~al~r~~l~v~vvAIvNDTVaTLla~ay~~~~~~iGlIlGTGtNacY~E~~~~I~k~~~~~~~ 275 (402)
||++++++|+||+++|++||+|++++|+|+||||||||||++++|.+|+|.||+|+|||||+||+|++++|||+++..+.
T Consensus 196 GF~~~gv~G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~~~~~iGlIlGTGtNacY~E~~~~i~k~~~~~~~ 275 (490)
T PLN02914 196 GFAVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDDDVMVAVILGTGTNACYVERTDAIPKLQGQKSS 275 (490)
T ss_pred ccccCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCCCCceEEEEEECCeeeEEEeecccccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999875555
Q ss_pred CCcEEEEeccCCcCCCCCCCCccchhhcccCCCCCcceeeeeccccchhHHHHHHHHHHHHccCCCCCCCCCCcCCCCcc
Q 015705 276 SGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFIL 355 (402)
Q Consensus 276 ~~~miINtEwG~Fg~~~lp~T~~D~~lD~~S~nPG~q~fEKmiSG~YLGEivRlill~l~~~~~lF~~~~~~~l~~~~~l 355 (402)
.++|+||||||+|| +.+|+|+||+.+|++|.|||+|+|||||||||||||+|+||++|++++.||++..|++|.+||+|
T Consensus 276 ~~~miINtEwG~F~-~~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG~YLGEivRlvLl~l~~~~~lF~~~~~~~L~~~~~l 354 (490)
T PLN02914 276 SGRTIINTEWGAFS-DGLPLTEFDREMDAASINPGEQIFEKTISGMYLGEIVRRVLLKMAETSDLFGHFVPEKLSTPFAL 354 (490)
T ss_pred CceEEEeccccccC-CCCCCChHHHHHhhCCCCCCcchhhhHHhhhhHHHHHHHHHHHHHHhcccccCCCcHhhcCCCcc
Confidence 67899999999996 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHhhcCCcchHHH
Q 015705 356 RCVFCAFALLLSNSVISSL 374 (402)
Q Consensus 356 ~t~~ls~~~~~~~~~~~~~ 374 (402)
+|++||+|+.+..+.+..+
T Consensus 355 ~T~~ls~i~~D~s~~l~~~ 373 (490)
T PLN02914 355 RTPHLCAMQQDNSDDLQAV 373 (490)
T ss_pred ccHHHHHHhcCCChhHHHH
Confidence 9999999987766666443
No 5
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.9e-100 Score=782.15 Aligned_cols=343 Identities=47% Similarity=0.698 Sum_probs=315.3
Q ss_pred hhhccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCC-CcceeeeccccCCCCCCccccEEEEEeC
Q 015705 25 RRRMKSTGRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGG-SKLKMLISYVDNLPTGDEKGLFYALDLG 103 (402)
Q Consensus 25 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~GL~~~~~-s~l~MLPS~v~~lP~G~E~G~fLAlDlG 103 (402)
.++...+.+++.+.++++++++.|.+|.++|++|+++|.+||++||++... +.++|+||||.++|+|+|+|+|||||||
T Consensus 15 ~~~~~~~~~~~~~~~~l~~~~~~f~l~~~~L~~v~~~~~~em~~gL~~~~~g~~~~mlpt~V~~lP~G~E~G~~lalDLG 94 (474)
T KOG1369|consen 15 AMVTAVASRLAAVSRQLEELLALFQLPDEQLREVVDAFREEMERGLAKKTHGSAVKMLPTYVPDLPDGTEKGKFLALDLG 94 (474)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCcccccchhhcccCCCCCcCCCEEEEecC
Confidence 344444567888999999999999999999999999999999999996543 3499999999999999999999999999
Q ss_pred CceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHhcCCCCCCCCCceeeeeeeeeeeeeec
Q 015705 104 GTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQT 183 (402)
Q Consensus 104 GTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~lpLGfTFSFP~~Q~ 183 (402)
||||||++|+|.|++. .+.+..++|+||+++|++++++||||||+|+.+|+++++... ..++|+||||||||+|+
T Consensus 95 GTn~Rv~~v~L~g~~~-~~~~~~~~~~ip~~~m~gt~~~Lfd~Ia~~l~~F~~~~~~~~----~~~l~lgFTFSfP~~Q~ 169 (474)
T KOG1369|consen 95 GTNFRVLLVKLGGGRT-SVRMYNKIYAIPEEIMQGTGEELFDFIARCLADFLDKMGLKG----ASKLPLGFTFSFPCRQT 169 (474)
T ss_pred CCceEEEEEEecCCcc-cceeeeeeEecCHHHHcCchHHHHHHHHHHHHHHHHHhcccc----ccccccceEEeeeeeec
Confidence 9999999999988766 667777899999999999999999999999999999988652 12299999999999999
Q ss_pred cCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCC-ceEEEEEechhHhhhcccccCCCceEEEEeecCeeeeeecc
Q 015705 184 SIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLD-MRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVER 262 (402)
Q Consensus 184 ~i~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~-v~vvAIvNDTVaTLla~ay~~~~~~iGlIlGTGtNacY~E~ 262 (402)
++++|+|++|||||++++++|+||+++|++||+|++++ +.|+|++|||||||++|+|.+|+|.||+|+|||||+||+|+
T Consensus 170 si~~g~L~~wTkGf~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~~~~~igvI~GTGtNacY~e~ 249 (474)
T KOG1369|consen 170 SIDKGTLIRWTKGFKATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYEDPNCEIGVIFGTGTNACYMED 249 (474)
T ss_pred ccccceEEEecccccchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecCCCcEEEEEECCCccceeeee
Confidence 99999999999999999999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred cCCCCccCCCCCCCCcEEEEeccCCcCCC--CCCCCccchhhcccCCCCCcceeeeeccccchhHHHHHHHHHHHHccCC
Q 015705 263 AHAIPKWHGLLPKSGEMVINMEWGNFRSS--HLPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANF 340 (402)
Q Consensus 263 ~~~I~k~~~~~~~~~~miINtEwG~Fg~~--~lp~T~~D~~lD~~S~nPG~q~fEKmiSG~YLGEivRlill~l~~~~~l 340 (402)
.++|+|+++..... +||||||||+||++ .+|+|+||..+|++|+|||+|.||||+||||||||||++|+++.+++.|
T Consensus 250 ~~~i~k~~~~~~~~-~miIN~EWG~F~~~~~~l~~T~yD~~vD~eS~npG~~~~EKmisGmYLGEivR~vLl~m~~~~~l 328 (474)
T KOG1369|consen 250 MRNIEKVEGDAGRG-PMCINTEWGAFGDNSLDLPRTEYDVVVDEESLNPGKQLFEKMISGMYLGEIVRLVLLDLLEEGLL 328 (474)
T ss_pred ccchhhcccccCCC-ceEEEccccCCCccccccchhhHHHHHhhhcCCcchhHHHHHhccccHHHHHHHHHHHHhHhhhh
Confidence 99999999864433 89999999999944 5899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcCCCCcccchhHHHHhhcCCcchHHHH
Q 015705 341 FGDTVPPKLKIPFILRCVFCAFALLLSNSVISSLY 375 (402)
Q Consensus 341 F~~~~~~~l~~~~~l~t~~ls~~~~~~~~~~~~~~ 375 (402)
|++.. ++| +|+.|+|+++|+|..+..+.+-..-
T Consensus 329 f~~~~-~~l-~p~~~~T~~~S~i~~D~~~~l~~~~ 361 (474)
T KOG1369|consen 329 FGGQS-TKL-TPFIFETKYVSAIEEDDTGALQETE 361 (474)
T ss_pred hcccc-ccc-CcceeccchHHhHhcCCchHHHHHH
Confidence 99988 778 9999999999999877777665544
No 6
>PTZ00107 hexokinase; Provisional
Probab=100.00 E-value=2.2e-98 Score=775.59 Aligned_cols=322 Identities=36% Similarity=0.562 Sum_probs=289.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccC---------CCCcceeeeccccCCCCCCccccEEEEEeCCc
Q 015705 35 ARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE---------GGSKLKMLISYVDNLPTGDEKGLFYALDLGGT 105 (402)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~GL~~~---------~~s~l~MLPS~v~~lP~G~E~G~fLAlDlGGT 105 (402)
.+..+.+++++++|.+|.++|++|+++|.+||++||+++ +.|+++||||||+++|+|+|+|+|||||||||
T Consensus 5 ~~~~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~~~~~~~~~~s~l~Mlps~v~~lPtG~E~G~fLAlDlGGT 84 (464)
T PTZ00107 5 IKQRVRLASLVNQFTMSKEKLKELVDYFLYELVEGLEAHRRHRNLWIPNECSFKMLDSCVYNLPTGKEKGVYYAIDFGGT 84 (464)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCccccccccCCCCCCCccceEEEEecCCc
Confidence 445667888888999999999999999999999999875 25789999999999999999999999999999
Q ss_pred eeEEEEEEEcCCcceeEEEEeeeeccCcccccc---------CchHHHHHHHHHHHHHHHhcCCCCCCCCCceeeeeeee
Q 015705 106 NFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTG---------SSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (402)
Q Consensus 106 NlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~---------t~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~lpLGfTF 176 (402)
||||++|+|.|++. .+..++++.||++++.+ ++++||||||+||.+|+++++... ...+++||||||
T Consensus 85 N~RV~~V~L~g~~~--~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~~~~~~--~~~~~l~lGfTF 160 (464)
T PTZ00107 85 NFRAVRVSLRGGGK--MERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEENGDPE--DLNKPVPVGFTF 160 (464)
T ss_pred eEEEEEEEeCCCCc--eeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHhccccc--cccccccceeEE
Confidence 99999999988653 33445689999999988 999999999999999999876311 123679999999
Q ss_pred eeeeeeccCCceEEEecccceec-----CCCCCCcHHHHHHHHHHHcCCCceEEEEEechhHhhhcccccC----CCceE
Q 015705 177 SFPVRQTSIASGDLIKWTKGFSI-----EDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN----KDAIA 247 (402)
Q Consensus 177 SFP~~Q~~i~~g~Li~wtKgF~~-----~~v~G~Dv~~lL~~al~r~~l~v~vvAIvNDTVaTLla~ay~~----~~~~i 247 (402)
||||+|+++++|+|++|||||++ ++++|+||+++|++||+|++++|+|+||||||||||+|++|.+ |+|+|
T Consensus 161 SFP~~Q~si~~g~Li~WtKGF~~~~~~~~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~~~~~~~~~i 240 (464)
T PTZ00107 161 SFPCTQLSVNNAILIDWTKGFETGRATNDPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQKPKNTPPCQV 240 (464)
T ss_pred eeeeecccCCceEEEEeccceeeccCCCCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcCcCCCCCceE
Confidence 99999999999999999999999 8999999999999999999999999999999999999999999 99999
Q ss_pred EEEeecCeeeeeecccCCCCccCCCCCCCCcEEEEeccCCcCCCCCCCCccchhhcccCCCCCcceeeeeccccchhHHH
Q 015705 248 AVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIV 327 (402)
Q Consensus 248 GlIlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~lD~~S~nPG~q~fEKmiSG~YLGEiv 327 (402)
|+|+|||||+||+|+.... +..+.|+||||||+|| +.+|+|+||+.+|+.|.|||+|+||||+||||||||+
T Consensus 241 GlIlGTG~NacY~E~~~~~-------~~~~~~iINtEwG~F~-~~lp~T~~D~~lD~~S~npg~Q~fEKmiSG~YLGEi~ 312 (464)
T PTZ00107 241 GVIIGTGSNACYFEPEVSA-------YGYAGTPINMECGNFD-SKLPITPYDLEMDWYTPNRGRQQFEKMISGAYLGEIS 312 (464)
T ss_pred EEEEeccccceeeehhhcc-------CCCCcEEEEeeccccC-CCCCCChHHHHHhhcCCCCCcCchhhHHhhhhHHHHH
Confidence 9999999999999965432 2245799999999997 4599999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCCCCCCCCcCCCCcccchhHHHHhhcCCcchHHH
Q 015705 328 RRVLCRMAEEANFFGDTVPPKLKIPFILRCVFCAFALLLSNSVISSL 374 (402)
Q Consensus 328 Rlill~l~~~~~lF~~~~~~~l~~~~~l~t~~ls~~~~~~~~~~~~~ 374 (402)
|+||++|++++ .|++|.++|+|+|+++|+|+.+..+.+..+
T Consensus 313 Rlvl~~l~~~~------~~~~l~~~~~~~t~~ls~i~~d~s~~l~~~ 353 (464)
T PTZ00107 313 RRLIVHLLQLK------APPKMWQSGSFESEDASMILNDQSPDLQFS 353 (464)
T ss_pred HHHHHHHHhcC------CchhhcCCcccccHHHHhhhcCCCchHHHH
Confidence 99999999865 478899999999999999987666665544
No 7
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-88 Score=682.86 Aligned_cols=353 Identities=40% Similarity=0.604 Sum_probs=317.6
Q ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCCCcceeeeccccCCCCCCccccEEEEEeCCceeEEEEE
Q 015705 33 RWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRV 112 (402)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~MLPS~v~~lP~G~E~G~fLAlDlGGTNlRV~~V 112 (402)
-|..+++.+.++++.|.+|.|+|.++.++|.+||++||+...+..++|+|+||...|+|+|+|+|||||+||||||||+|
T Consensus 13 ~~~~l~~~~~~~~~~~~~p~e~l~~v~~~Fieel~kgL~~~~G~~l~MIP~~v~~~p~g~e~g~~LaiD~GGTnlRvc~V 92 (466)
T COG5026 13 VEAALEQAVEELVESFTVPTEDLREVVKAFIEELEKGLQPKSGDFLPMIPTWVAPLPTGNESGSVLAIDLGGTNLRVCLV 92 (466)
T ss_pred ccHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHhccCCCCCCccccccccccCCCCCCCCCCEEEEecCCceEEEEEE
Confidence 46778999999999999999999999999999999999954334499999999999999999999999999999999999
Q ss_pred EEcCCcceeEEEEeeeeccCcccccc-CchHHHHHHHHHHHHHHHhcCCCCCCCCCceeeeeeeeeeeeeeccCCceEEE
Q 015705 113 QLGGREGRVVKQEFEEVSIPPHLMTG-SSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLI 191 (402)
Q Consensus 113 ~L~g~~~~~~~~~~~~~~Ip~~~~~~-t~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~lpLGfTFSFP~~Q~~i~~g~Li 191 (402)
+|+|+++...++. ++.+|.+..+. +.++||+|||++++.|+++++... ...++|+|||||||++|+++++|.|+
T Consensus 93 ~l~g~gt~~~~~s--ks~lp~e~~~~~~~~~l~~~iadrl~~fi~~~~~~~---~~~~l~~gfTFSYP~~q~sin~g~l~ 167 (466)
T COG5026 93 VLGGDGTFDIEQS--KSFLPVECRDSESRDELFGFIADRLAAFIKEQHPSG---YGSKLPIGFTFSYPLNQTSINEGQLI 167 (466)
T ss_pred EeCCCCCcccccC--cccCchhhccCCChHHHHHHHHHHHHHHHHHhCchh---ccCcceeeEEEeccccccccCceeeE
Confidence 9999887665544 44499999877 899999999999999999987643 24689999999999999999999999
Q ss_pred ecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechhHhhhcccccCCCceEEEEeecCeeeeeecccCCCCccCC
Q 015705 192 KWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHG 271 (402)
Q Consensus 192 ~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~vvAIvNDTVaTLla~ay~~~~~~iGlIlGTGtNacY~E~~~~I~k~~~ 271 (402)
+|||||++++++|+||+++|+++|+++++|++|+||+|||||||||+.|.++++.||+|+|||||+||+|+.+.|||++.
T Consensus 168 rwTKgf~i~e~ig~dvv~~l~e~l~~r~~pi~v~aviNDttgtlla~~yt~~~~~iG~IfGTGtN~~y~e~~~~ipkl~~ 247 (466)
T COG5026 168 RWTKGFDIPEVIGTDVVRLLQEALSARNLPIRVVAVINDTTGTLLASVYTSSETIIGIIFGTGTNGCYCEPKGRIPKLPR 247 (466)
T ss_pred eecccCcchhhhhhhHHHHHHHHHHhcCCceEEEEEecccHHHHHHHhhcCCCCeEEEEEecCccceEEeecccCCcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred C-CCCCCcEEEEeccCCcCCCC--CCCCccchhhcccCCCCCcceeeeeccccchhHHHHHHHHHHHHccCCCCCCCCCC
Q 015705 272 L-LPKSGEMVINMEWGNFRSSH--LPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPK 348 (402)
Q Consensus 272 ~-~~~~~~miINtEwG~Fg~~~--lp~T~~D~~lD~~S~nPG~q~fEKmiSG~YLGEivRlill~l~~~~~lF~~~~~~~ 348 (402)
. .+...+|+||+|||+|++.. +|+|+||..+|++|++||.|.||||+||+|||||+|++|+++..+|.+|.++.|++
T Consensus 248 d~~~~~~pm~iN~EwGsfdn~~~~Lp~t~ydv~idq~s~~pg~~~~Ek~~sG~yLGellr~~L~~l~~qg~~~~~q~~~~ 327 (466)
T COG5026 248 DDLPETGPMLINCEWGSFDNELSVLPRTKYDVLIDQESPNPGHQIFEKMSSGMYLGELLRLILRNLYEQGLIFNGQDPEK 327 (466)
T ss_pred ccccccCCeEEEecccccCcceeeccccceeeeeccCCCCcchHHHhhhhcceeHHHHHHHHHHHHHHHHhhccccchhh
Confidence 3 35567899999999998655 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccchhHHHHhhcCCcchHHH----H-Hhhhc-chhhhhhhhh
Q 015705 349 LKIPFILRCVFCAFALLLSNSVISSL----Y-RNLLS-MDEVYFLIFH 390 (402)
Q Consensus 349 l~~~~~l~t~~ls~~~~~~~~~~~~~----~-~~~~~-~~~~~~~~~~ 390 (402)
+..|+.++|+.+|.+..+....+..- . +..++ +.|.|.+|+.
T Consensus 328 ~~~p~~l~t~~~s~i~~D~~~nl~~t~~~f~~~~~~~tt~eer~lI~~ 375 (466)
T COG5026 328 LTDPFALSTSVLSRIEEDPFENLRNTLTTFLNDFRAPTTKEERKLIRR 375 (466)
T ss_pred cccceeeecchhhhhccccccccchhHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999999999986533322222 2 22333 4488888874
No 8
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=100.00 E-value=8.4e-63 Score=463.07 Aligned_cols=202 Identities=48% Similarity=0.754 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCC--CcceeeeccccCCCCCCccccEEEEEeCCceeEEEEEE
Q 015705 36 RAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGG--SKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQ 113 (402)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~GL~~~~~--s~l~MLPS~v~~lP~G~E~G~fLAlDlGGTNlRV~~V~ 113 (402)
+..+.++++.+.|.+|.++|++|+++|++||+.||+++.. +.++||||||+++|+|+|+|+|||||||||||||++|+
T Consensus 2 ~~~~~v~~~~~~f~~s~~~L~~i~~~f~~em~~gL~~~~~~~~~l~MlPs~v~~~P~G~E~G~~LalDlGGTnlRv~~V~ 81 (206)
T PF00349_consen 2 DLQQAVQKLLQQFTLSDEQLQEISDRFLEEMEKGLAKSSSSMSSLKMLPSYVTSLPTGNEKGDFLALDLGGTNLRVALVE 81 (206)
T ss_dssp HHHHHHHHHHGGGS--HHHHHHHHHHHHHHHHHHHSTTTGCG-SS-EEEESEESSTTSTTEEEEEEEEESSSSEEEEEEE
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHccCCCCceeeeccccccccCCCCCCCceEEEEeecCcEEEEEEEE
Confidence 4678888999999999999999999999999999997652 24999999999999999999999999999999999999
Q ss_pred EcCCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHhcCCCCCCCCCceeeeeeeeeeeeeeccCCceEEEec
Q 015705 114 LGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKW 193 (402)
Q Consensus 114 L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~lpLGfTFSFP~~Q~~i~~g~Li~w 193 (402)
|.|++. ....+++|+||++++.+++++||||||+||++|+++++.. ..++++||||||||||+|+++++|+|++|
T Consensus 82 L~g~~~--~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~---~~~~~l~lGfTFSFP~~q~~~~~g~li~w 156 (206)
T PF00349_consen 82 LSGNGK--VEIEQEKYKIPEELMNGSGEELFDFIADCIAEFLKEHNLE---SRDEKLPLGFTFSFPVEQTSLNSGTLIRW 156 (206)
T ss_dssp EESSSE--EEEEEEEEE--HHHHTSBHHHHHHHHHHHHHHHHHHTTTT---STTSEEEEEEEEESSEEESSTTEEEE---
T ss_pred EcCCCC--ceeeeccccCChHHhcCCcccHHHHHHHHHHHHHHHhccc---ccccccceEEEEEEEEEeccCCCeEEEEe
Confidence 988763 3344568999999999999999999999999999998753 23578999999999999999999999999
Q ss_pred ccceecCCCCCCcHHHHHHHHHHHcCCC-ceEEEEEechhHhhhcccccC
Q 015705 194 TKGFSIEDTVGEDVVGELTKAMERIGLD-MRVAALVNDTIGTLAGGRYHN 242 (402)
Q Consensus 194 tKgF~~~~v~G~Dv~~lL~~al~r~~l~-v~vvAIvNDTVaTLla~ay~~ 242 (402)
||||++++++|+||+++|++||+|++++ ++|+||+|||||||||++|.|
T Consensus 157 tKgf~~~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y~~ 206 (206)
T PF00349_consen 157 TKGFDISGVVGKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAYQD 206 (206)
T ss_dssp -TT---BTGTTSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHTT-
T ss_pred eccccccCCCCCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhcCC
Confidence 9999999999999999999999999987 999999999999999999975
No 9
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=100.00 E-value=7.6e-42 Score=328.03 Aligned_cols=142 Identities=44% Similarity=0.703 Sum_probs=120.7
Q ss_pred CceEEEEeecCeeeeeecccCCCCccCCCCCCCCcEEEEeccCCcCCC--CCCCCccchhhcccCCCCCcceeeeecccc
Q 015705 244 DAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSS--HLPLTEYDEALDTESLNPGEQIFEKIISGM 321 (402)
Q Consensus 244 ~~~iGlIlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~Fg~~--~lp~T~~D~~lD~~S~nPG~q~fEKmiSG~ 321 (402)
+|+||+|+|||||+||+|+.++|+|+++ ..++||||||||+|+.. .+|+|+||+.+|+.|+|||+|+||||+|||
T Consensus 1 ~~~iGlIlGTG~Na~Y~e~~~~i~~~~~---~~~~~iINtEwg~f~~~~~~~~~t~~D~~lD~~s~~pg~q~~EKmvsG~ 77 (243)
T PF03727_consen 1 ECRIGLILGTGTNACYMEKTSNIPKLKG---KDGKMIINTEWGNFDNGLLDLPRTEYDKQLDAESPNPGFQPFEKMVSGM 77 (243)
T ss_dssp TEEEEEEESSSEEEEEEEEGGG-TTSST---SSSEEEEEE-GGGTTTTTTTTTS-HHHHHHHHTSSSTTSSTTHHHTSHH
T ss_pred CcEEEEEEeCCeeEEEeeecccCccccc---cCCeEEEEeecCCCCCCCccCCCCcccHHHhhhhhccCceEEeeEecee
Confidence 5899999999999999999999999988 56789999999999653 279999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHccCCCCCCCCCCcCCCCcccchhHHHHhhcCCcchHHHHHhhhc------chhhhhhh
Q 015705 322 YLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRCVFCAFALLLSNSVISSLYRNLLS------MDEVYFLI 388 (402)
Q Consensus 322 YLGEivRlill~l~~~~~lF~~~~~~~l~~~~~l~t~~ls~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 388 (402)
|||||+|++|+++++++.||++..|++|.++|+|+|++||.++.+....+..+...|.. ..||+.++
T Consensus 78 YLGEl~Rlvl~~l~~~~~lf~~~~~~~l~~~~~~~t~~~s~i~~d~~~~~~~~~~~l~~~~~~~~t~~d~~~l 150 (243)
T PF03727_consen 78 YLGELVRLVLLDLIKEGLLFGGQDPEKLNTPYSFDTKFLSEIEEDPSDDLSETREILQEFFGLPPTEEDRQIL 150 (243)
T ss_dssp HHHHHHHHHHHHHHHTTSSGGGS--TTTTSTTSS-HHHHHHHTCT-TTCHHHHHHHHHHCTTSSS-HHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCccCCcchHHhcCCCcccHHHHhhhhhhcccchHHHHHHHhhccCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999988766777777666543 55666554
No 10
>PRK09698 D-allose kinase; Provisional
Probab=98.60 E-value=1.8e-06 Score=84.73 Aligned_cols=163 Identities=17% Similarity=0.213 Sum_probs=103.0
Q ss_pred cccEEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHhcCCCCCCCCCceeeee
Q 015705 94 KGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (402)
Q Consensus 94 ~G~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~lpLG 173 (402)
.+.++++|+|||++|++++.+.|+ +... ..++.|.. .+.+ .++.+++.|.+++.+.+. +-.-+|
T Consensus 3 ~~~~lgidig~t~i~~~l~d~~g~---i~~~--~~~~~~~~---~~~~-~~~~l~~~i~~~~~~~~~-------~i~gig 66 (302)
T PRK09698 3 KNVVLGIDMGGTHIRFCLVDAEGE---ILHC--EKKRTAEV---IAPD-LVSGLGEMIDEYLRRFNA-------RCHGIV 66 (302)
T ss_pred ccEEEEEEcCCcEEEEEEEcCCCC---EEEE--EEeCCccc---cchH-HHHHHHHHHHHHHHHcCC-------CeeEEE
Confidence 457899999999999999998664 2322 23444432 2233 499999999999987531 223345
Q ss_pred eeeeeeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechhHhhhccccc---CCCceEEEE
Q 015705 174 FTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH---NKDAIAAVI 250 (402)
Q Consensus 174 fTFSFP~~Q~~i~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~vvAIvNDTVaTLla~ay~---~~~~~iGlI 250 (402)
+.+.-|++. +.+.++. +..+..++..+.++.+.|++++ ++| +.+.||..+..++-.+. .++..+.+.
T Consensus 67 ia~pG~vd~---~~g~i~~-~~~~~~~~~~~~~l~~~l~~~~---~~p---v~v~NDa~aaa~~E~~~~~~~~~~~~~v~ 136 (302)
T PRK09698 67 MGFPALVSK---DRRTVIS-TPNLPLTALDLYDLADKLENTL---NCP---VFFSRDVNLQLLWDVKENNLTQQLVLGAY 136 (302)
T ss_pred EeCCcceeC---CCCEEEe-cCCCCccccccCCHHHHHHHHh---CCC---EEEcchHhHHHHHHHHhcCCCCceEEEEE
Confidence 555445553 3454443 3334333456678888887765 444 68999999877654332 345789999
Q ss_pred eecCeeeeeecccCCCCccCCCCCCCCcEEEE
Q 015705 251 LGTGTNAAYVERAHAIPKWHGLLPKSGEMVIN 282 (402)
Q Consensus 251 lGTGtNacY~E~~~~I~k~~~~~~~~~~miIN 282 (402)
+|||.-++++.+-.-+.-..+...+-++|.++
T Consensus 137 lgtGIG~giv~~G~~~~G~~g~agEiGh~~v~ 168 (302)
T PRK09698 137 LGTGMGFAVWMNGAPWTGAHGVAGELGHIPLG 168 (302)
T ss_pred ecCceEEEEEECCEEeeCCCCCccccCceEee
Confidence 99999999998643322222212233566664
No 11
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=98.34 E-value=2.2e-05 Score=75.76 Aligned_cols=138 Identities=14% Similarity=0.254 Sum_probs=93.0
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHhcCCCCCCCCCceeeeeeee
Q 015705 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (402)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~lpLGfTF 176 (402)
|+++|+|||++|++++++.++ +... ++++.|. .+.+++.+.+.+.+.++..... ...|..+
T Consensus 2 ~lgidiggt~i~~~l~d~~g~---i~~~--~~~~~~~----~~~~~~~~~i~~~i~~~~~~~~----------~~~gIgv 62 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDENLQ---RIWH--KRVPTPR----EDYPQLLQILRDLTEEADTYCG----------VQGSVGI 62 (256)
T ss_pred EEEEEECCCcEEEEEECCCCC---EEEE--EEecCCC----cCHHHHHHHHHHHHHHHHhhcC----------CCceEEE
Confidence 799999999999999998663 2322 2455552 2457888888888877753322 1236667
Q ss_pred eeeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechhHhhhccccc----CCCceEEEEee
Q 015705 177 SFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVILG 252 (402)
Q Consensus 177 SFP~~Q~~i~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~vvAIvNDTVaTLla~ay~----~~~~~iGlIlG 252 (402)
|.|=-- ..+.|++ .++ ..++-.+.++.+.|++.+ ++| +.+-||+-+.-++-.+. +.+..+.+.+|
T Consensus 63 ~~pG~v-d~~~g~i-~~~---~~~~w~~~~l~~~l~~~~---~~p---V~leNDanaaAlaE~~~g~~~~~~~~v~i~lg 131 (256)
T PRK13311 63 GIPGLP-NADDGTV-FTA---NVPSAMGQPLQADLSRLI---QRE---VRIDNDANCFALSEAWDPEFRTYPTVLGLILG 131 (256)
T ss_pred EecCcE-ECCCCEE-Ecc---CCCcccCCChHHHHHHHH---CCC---EEEEchhhHHHHHHHHhcCCCCCCcEEEEEEC
Confidence 776422 1234554 343 223334678888888766 343 58999998877776553 45788999999
Q ss_pred cCeeeeeecccC
Q 015705 253 TGTNAAYVERAH 264 (402)
Q Consensus 253 TGtNacY~E~~~ 264 (402)
||.-++.+..-.
T Consensus 132 tGiG~giv~~G~ 143 (256)
T PRK13311 132 TGVGGGLIVNGS 143 (256)
T ss_pred cCeEEEEEECCE
Confidence 999999988743
No 12
>PRK12408 glucokinase; Provisional
Probab=98.18 E-value=2.2e-05 Score=79.05 Aligned_cols=192 Identities=19% Similarity=0.171 Sum_probs=107.8
Q ss_pred CCCcccc-EEEEEeCCceeEEEEEEEcCCc---ceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHhcCCCCCCC
Q 015705 90 TGDEKGL-FYALDLGGTNFRVLRVQLGGRE---GRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVS 165 (402)
Q Consensus 90 ~G~E~G~-fLAlDlGGTNlRV~~V~L~g~~---~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~~~~~~~ 165 (402)
++-|++. ||++|+||||.|+++|+-++.. .... ..++++-+ ..+.+.+. |.+|+++ ..
T Consensus 10 ~~~~~~~~~L~~DIGGT~i~~al~d~~g~~~~~~~~~--~~~~~~t~------~~~~~~~~----i~~~~~~-~~----- 71 (336)
T PRK12408 10 VAVPRPESFVAADVGGTHVRVALVCASPDAAKPVELL--DYRTYRCA------DYPSLAAI----LADFLAE-CA----- 71 (336)
T ss_pred ccCcccccEEEEEcChhhhheeEEeccCCcccccccc--ceeEecCC------CccCHHHH----HHHHHhc-CC-----
Confidence 4556664 9999999999999999754431 0111 11223222 12233333 5566654 11
Q ss_pred CCceeeeeeeeeeeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechhHhhhccccc----
Q 015705 166 PGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH---- 241 (402)
Q Consensus 166 ~~~~lpLGfTFSFP~~Q~~i~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~vvAIvNDTVaTLla~ay~---- 241 (402)
+ +.|..+++|=- . .++|++.. + ..... ... +.|+++ +.+..|.|.||.-+.-++-.+.
T Consensus 72 --~--~~~igIg~pG~-~-~~~g~v~~-~-nl~w~-----~~~----~~l~~~-~~~~~V~l~ND~naaa~gE~~~~~~~ 133 (336)
T PRK12408 72 --P--VRRGVIASAGY-A-LDDGRVIT-A-NLPWT-----LSP----EQIRAQ-LGLQAVHLVNDFEAVAYAAPYMEGNQ 133 (336)
T ss_pred --C--cCEEEEEecCC-c-eECCEEEe-c-CCCCc-----cCH----HHHHHH-cCCCeEEEeecHHHHHcccccCCHhH
Confidence 1 34666666654 1 34566652 2 11111 122 333332 3455579999999999987665
Q ss_pred ---------CC-CceEEEEeecCeeeeeecccCCCCccCCCCCCCCcEEEEeccCCcCCCCCCCCccchhh-cccCCCCC
Q 015705 242 ---------NK-DAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEAL-DTESLNPG 310 (402)
Q Consensus 242 ---------~~-~~~iGlIlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~l-D~~S~nPG 310 (402)
+. ...+.+.+|||..++.+.+-. .+....=.|+|... ..|.+.....+ .......|
T Consensus 134 ~~~~~g~~~~~~~~~~~i~~GTGiGggivi~g~-----------~g~~~~agE~GH~~--~~~~~~~~~~l~~~~~~~~~ 200 (336)
T PRK12408 134 VLQLSGPAQAAAGPALVLGPGTGLGAALWIPNG-----------GRPVVLPTEAGQAA--LAAASELEMQLLQHLLRTRT 200 (336)
T ss_pred eeeecCCCCCCCCcEEEEECCCcceEEEEEcCC-----------CceeeecCcccccc--CCCCCHHHHHHHHHHHhhCC
Confidence 22 467888899999999987532 12345667777642 11222111110 11122334
Q ss_pred cceeeeeccccchhHHHHHH
Q 015705 311 EQIFEKIISGMYLGEIVRRV 330 (402)
Q Consensus 311 ~q~fEKmiSG~YLGEivRli 330 (402)
.-.+|...||.-|..+.|..
T Consensus 201 ~~~~E~~~Sg~gL~~~~~~~ 220 (336)
T PRK12408 201 HVPIEHVLSGPGLLNLYRAL 220 (336)
T ss_pred ceeHhheecHHHHHHHHHHH
Confidence 45689999999998887755
No 13
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=98.13 E-value=9.6e-05 Score=72.86 Aligned_cols=137 Identities=18% Similarity=0.303 Sum_probs=92.8
Q ss_pred EEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHhcCCCCCCCCCceeeeeeeee
Q 015705 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (402)
Q Consensus 98 LAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~lpLGfTFS 177 (402)
+++|+|||++|++++++.|. +.... .++.+ .+.+++++.|.+.|.+|+++.+... .-.+|..++
T Consensus 1 lgidig~t~~~~~l~d~~g~---i~~~~--~~~~~-----~~~~~~~~~l~~~i~~~~~~~~~~~------~~i~gIgva 64 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGN---ILSKW--KVPTD-----TTPETIVDAIASAVDSFIQHIAKVG------HEIVAIGIG 64 (318)
T ss_pred CEEEeCCCEEEEEEECCCCC---EEEEE--EeCCC-----CCHHHHHHHHHHHHHHHHHhcCCCc------cceEEEEEe
Confidence 58999999999999998663 23222 33333 2468899999999999998765321 124677777
Q ss_pred ee--eeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechhHhhhcccc----cCCCceEEEEe
Q 015705 178 FP--VRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY----HNKDAIAAVIL 251 (402)
Q Consensus 178 FP--~~Q~~i~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~vvAIvNDTVaTLla~ay----~~~~~~iGlIl 251 (402)
.| ++. ++|.+ .|+-.+.. .+.|+.+.|++.+ ++| +.+.||+.+..++-.+ .+.+..+.+.+
T Consensus 65 ~pG~vd~---~~g~~-~~~~~~~w---~~~~l~~~l~~~~---~~p---v~v~NDa~~~alaE~~~g~~~~~~~~~~v~i 131 (318)
T TIGR00744 65 APGPVNR---QRGTV-YFAVNLDW---KQEPLKEKVEARV---GLP---VVVENDANAAALGEYKKGAGKGARDVICITL 131 (318)
T ss_pred ccccccC---CCCEE-EecCCCCC---CCCCHHHHHHHHH---CCC---EEEechHHHHHHHHHHhcccCCCCcEEEEEe
Confidence 76 443 34553 23322222 3457777776654 444 5799999988776443 35577899999
Q ss_pred ecCeeeeeeccc
Q 015705 252 GTGTNAAYVERA 263 (402)
Q Consensus 252 GTGtNacY~E~~ 263 (402)
|||..++++.+-
T Consensus 132 gtGiG~giv~~G 143 (318)
T TIGR00744 132 GTGLGGGIIING 143 (318)
T ss_pred CCccEEEEEECC
Confidence 999999998763
No 14
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=98.12 E-value=8.2e-05 Score=73.14 Aligned_cols=138 Identities=20% Similarity=0.291 Sum_probs=92.9
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHhcCCCCCCCCCceeeeeeee
Q 015705 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (402)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~lpLGfTF 176 (402)
++++|+|||++|++++++.++ +.... .++.|. .+.+++.+.|++.+.++....+. ...+|+.+
T Consensus 2 ~lgidig~t~i~~~l~d~~g~---i~~~~--~~~~~~----~~~~~~~~~i~~~i~~~~~~~~~--------~~~igia~ 64 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEKLE---LQWEE--RVPTPR----DSYDAFLDAVCELVAEADQRFGC--------KGSVGIGI 64 (303)
T ss_pred eEEEEeCCCcEEEEEECCCCc---EEEEE--EecCCC----cCHHHHHHHHHHHHHHHHhhcCC--------cceEEEeC
Confidence 689999999999999998653 23222 344442 24678889999888888654321 12366666
Q ss_pred eeeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechhHhhhccccc----CCCceEEEEee
Q 015705 177 SFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVILG 252 (402)
Q Consensus 177 SFP~~Q~~i~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~vvAIvNDTVaTLla~ay~----~~~~~iGlIlG 252 (402)
.=|++. +.|.+. ++ ..++-.+-++.+.|++.+ ++| +.+-||.-+..++-.+. +.+..+.+.+|
T Consensus 65 pG~vd~---~~g~~~-~~---~~~~w~~~~l~~~l~~~~---~~p---V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~g 131 (303)
T PRK13310 65 PGMPET---EDGTLY-AA---NVPAASGKPLRADLSARL---GRD---VRLDNDANCFALSEAWDDEFTQYPLVMGLILG 131 (303)
T ss_pred CCcccC---CCCEEe-cc---CcccccCCcHHHHHHHHH---CCC---eEEeccHhHHHHHHhhhccccCCCcEEEEEec
Confidence 666654 345443 22 223334567777777654 444 57999998877665443 45788999999
Q ss_pred cCeeeeeecccC
Q 015705 253 TGTNAAYVERAH 264 (402)
Q Consensus 253 TGtNacY~E~~~ 264 (402)
||.-++++.+-.
T Consensus 132 tGiG~giv~~G~ 143 (303)
T PRK13310 132 TGVGGGLVFNGK 143 (303)
T ss_pred CceEEEEEECCE
Confidence 999999998743
No 15
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=98.08 E-value=8.4e-05 Score=73.35 Aligned_cols=165 Identities=21% Similarity=0.335 Sum_probs=107.3
Q ss_pred ccccEEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHhcCCCCCCCCCceeee
Q 015705 93 EKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172 (402)
Q Consensus 93 E~G~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~lpL 172 (402)
+...+++||+|||+++++++++.|+ +... +..+.|... ..+++.+-|++.+.++++... . ..-.+
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~---~l~~--~~~~~~~~~---~~~~~~~~i~~~i~~~~~~~~-~------~~~~i 68 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGE---ILLR--ERIPTPTPD---PEEAILEAILALVAELLKQAQ-G------RVAII 68 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCc---EEEE--EEEecCCCC---chhHHHHHHHHHHHHHHHhcC-C------cCceE
Confidence 4557999999999999999998764 2221 234444432 125888999999999988763 1 12357
Q ss_pred eeeeeeeeeeccCC---ceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechhHhhhccccc----CCCc
Q 015705 173 GFTFSFPVRQTSIA---SGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDA 245 (402)
Q Consensus 173 GfTFSFP~~Q~~i~---~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~vvAIvNDTVaTLla~ay~----~~~~ 245 (402)
|+-++-|..-..-. ....+.|. .+-|+.+.|++.+. +| +.|-||+.+.-++-++. +.+.
T Consensus 69 GIgi~~pg~~~~~~~~~~~~~~~~~--------~~~~l~~~L~~~~~---~P---v~veNDan~aalaE~~~g~~~~~~~ 134 (314)
T COG1940 69 GIGIPGPGDVDNGTVIVPAPNLGWW--------NGVDLAEELEARLG---LP---VFVENDANAAALAEAWFGAGRGIDD 134 (314)
T ss_pred EEEeccceeccCCcEEeecCCCCcc--------ccccHHHHHHHHHC---CC---EEEecHHHHHHHHHHHhCCCCCCCC
Confidence 77777776664321 22222222 23567777766654 33 58899999999998885 3578
Q ss_pred eEEEEeecCeeeeeecccCCCCccCCCCCCCCcEEEEeccC
Q 015705 246 IAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWG 286 (402)
Q Consensus 246 ~iGlIlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG 286 (402)
.+-+.+|||.-++++..-.-..-..+...+-++|+++-...
T Consensus 135 ~~~i~~gtGIG~giv~~g~l~~G~~g~age~Gh~~v~~~g~ 175 (314)
T COG1940 135 VVYITLGTGIGGGIIVNGKLLRGANGNAGEIGHMVVDPDGE 175 (314)
T ss_pred EEEEEEccceeEEEEECCEEeecCCCccccccceEECCCCc
Confidence 99999999999999987443222112111235677766553
No 16
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=98.07 E-value=6.1e-05 Score=67.95 Aligned_cols=132 Identities=23% Similarity=0.378 Sum_probs=95.2
Q ss_pred EEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHhcCCCCCCCCCceeeeeeeeee
Q 015705 99 ALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSF 178 (402)
Q Consensus 99 AlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~lpLGfTFSF 178 (402)
+||+|+|.+|++++++.|+ ++.. +.+++| .+.+++.+.+.+.+.+++.+.+. . -+|+.++=
T Consensus 1 gidig~~~i~~~l~d~~g~---ii~~--~~~~~~-----~~~~~~~~~l~~~i~~~~~~~~~--------~-gIgi~~pG 61 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGE---IIYS--ESIPTP-----TSPEELLDALAELIERLLADYGR--------S-GIGISVPG 61 (179)
T ss_dssp EEEEESSEEEEEEEETTSC---EEEE--EEEEHH-----SSHHHHHHHHHHHHHHHHHHHTC--------E-EEEEEESS
T ss_pred CEEECCCEEEEEEECCCCC---EEEE--EEEECC-----CCHHHHHHHHHHHHHHHHhhccc--------c-cEEEeccc
Confidence 5899999999999999764 3333 245555 46789999999999999987652 1 34444444
Q ss_pred eeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechhHhhhccccc----CCCceEEEEeecC
Q 015705 179 PVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVILGTG 254 (402)
Q Consensus 179 P~~Q~~i~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~vvAIvNDTVaTLla~ay~----~~~~~iGlIlGTG 254 (402)
|++. ++|.++.... .+..+.++.+.|++.+. + .+.+.||..+..++-.+. +.+..+-+-+|||
T Consensus 62 ~v~~---~~g~i~~~~~----~~~~~~~l~~~l~~~~~---~---pv~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~G 128 (179)
T PF00480_consen 62 IVDS---EKGRIISSPN----PGWENIPLKEELEERFG---V---PVIIENDANAAALAEYWFGAAKDCDNFLYLYIGTG 128 (179)
T ss_dssp EEET---TTTEEEECSS----GTGTTCEHHHHHHHHHT---S---EEEEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSS
T ss_pred cCcC---CCCeEEecCC----CCcccCCHHHHhhcccc---e---EEEEecCCCcceeehhhcCccCCcceEEEEEeecC
Confidence 4555 2355554433 44556899999988773 2 568999999887776552 4467888999999
Q ss_pred eeeeeecc
Q 015705 255 TNAAYVER 262 (402)
Q Consensus 255 tNacY~E~ 262 (402)
.-++++.+
T Consensus 129 iG~~ii~~ 136 (179)
T PF00480_consen 129 IGAGIIIN 136 (179)
T ss_dssp EEEEEEET
T ss_pred CCcceecc
Confidence 99999875
No 17
>PRK09557 fructokinase; Reviewed
Probab=98.00 E-value=0.00022 Score=70.12 Aligned_cols=136 Identities=19% Similarity=0.286 Sum_probs=88.8
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHhcCCCCCCCCCceeeeeeee
Q 015705 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (402)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~lpLGfTF 176 (402)
+|++|+|||++|++++++.|+ +... ..++.|. .+.+++.+.|++.+.+++.+.+. ..-+|+.+
T Consensus 2 ~lgidig~t~~~~~l~d~~g~---i~~~--~~~~~~~----~~~~~~~~~i~~~i~~~~~~~~~--------~~gIgi~~ 64 (301)
T PRK09557 2 RIGIDLGGTKIEVIALDDAGE---ELFR--KRLPTPR----DDYQQTIEAIATLVDMAEQATGQ--------RGTVGVGI 64 (301)
T ss_pred EEEEEECCCcEEEEEECCCCC---EEEE--EEecCCC----CCHHHHHHHHHHHHHHHHhhcCC--------ceEEEecC
Confidence 689999999999999998663 2222 2344442 24578888888888887654321 12244444
Q ss_pred eeeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechhHhhhcccc----cCCCceEEEEee
Q 015705 177 SFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY----HNKDAIAAVILG 252 (402)
Q Consensus 177 SFP~~Q~~i~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~vvAIvNDTVaTLla~ay----~~~~~~iGlIlG 252 (402)
.=|++. ++|++......+ ..+.++.+.|++.+ ++| +.+.||..+..++-.+ .+++..+-+.+|
T Consensus 65 pG~vd~---~~g~i~~~~~~~----~~~~~l~~~l~~~~---~~p---v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~ig 131 (301)
T PRK09557 65 PGSISP---YTGLVKNANSTW----LNGQPLDKDLSARL---NRE---VRLANDANCLAVSEAVDGAAAGKQTVFAVIIG 131 (301)
T ss_pred cccCcC---CCCeEEecCCcc----ccCCCHHHHHHHHH---CCC---EEEccchhHHHHHHHHhcccCCCCcEEEEEEc
Confidence 444533 345544322211 13567777777776 343 5689999988777544 345678899999
Q ss_pred cCeeeeeecc
Q 015705 253 TGTNAAYVER 262 (402)
Q Consensus 253 TGtNacY~E~ 262 (402)
||.-++.+.+
T Consensus 132 tGiG~giv~~ 141 (301)
T PRK09557 132 TGCGAGVAIN 141 (301)
T ss_pred cceEEEEEEC
Confidence 9999999876
No 18
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=97.89 E-value=0.00045 Score=67.57 Aligned_cols=136 Identities=15% Similarity=0.203 Sum_probs=90.2
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHhcCCCCCCCCCceeeeeeee
Q 015705 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (402)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~lpLGfTF 176 (402)
++++|+|||++|++++++.|+ +.. ...++.|.. .+.+++.+.|++.+.++..+ ...+|+..
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~---i~~--~~~~~~~~~---~~~~~~~~~i~~~i~~~~~~-----------~~~igi~~ 63 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQ---IRQ--RRQIPTPAS---QTPEALRQALSALVSPLQAQ-----------ADRVAVAS 63 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCc---EEE--EEEecCCCC---CCHHHHHHHHHHHHHHhhhc-----------CcEEEEeC
Confidence 799999999999999999764 222 223454432 34677888888888877531 12477777
Q ss_pred eeeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechhHhhhcccc---cCCCceEEEEeec
Q 015705 177 SFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY---HNKDAIAAVILGT 253 (402)
Q Consensus 177 SFP~~Q~~i~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~vvAIvNDTVaTLla~ay---~~~~~~iGlIlGT 253 (402)
.-|++. +....+. .....+..+.|+.+.|++.+ ++| +.|.||+.+..++-.+ .+.+..+-+-+||
T Consensus 64 pG~vd~-----~~~~~~~-~~~~~~w~~~~l~~~l~~~~---~~p---v~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~ 131 (291)
T PRK05082 64 TGIIND-----GILTALN-PHNLGGLLHFPLVQTLEQLT---DLP---TIALNDAQAAAWAEYQALPDDIRNMVFITVST 131 (291)
T ss_pred cccccC-----CeeEEec-CCCCccccCCChHHHHHHHh---CCC---EEEECcHHHHHHHHHHhcCCCCCCEEEEEECC
Confidence 777752 2221111 01122234677888777654 444 5799999998777543 2556789999999
Q ss_pred Ceeeeeeccc
Q 015705 254 GTNAAYVERA 263 (402)
Q Consensus 254 GtNacY~E~~ 263 (402)
|.-++++.+-
T Consensus 132 GiG~giv~~G 141 (291)
T PRK05082 132 GVGGGIVLNG 141 (291)
T ss_pred CcceEEEECC
Confidence 9999998864
No 19
>PTZ00288 glucokinase 1; Provisional
Probab=97.88 E-value=0.00047 Score=71.63 Aligned_cols=222 Identities=20% Similarity=0.203 Sum_probs=123.1
Q ss_pred HHHHHHHHHhhccCCCCcceeeeccccCCCCCCccccEEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccC
Q 015705 60 DAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGS 139 (402)
Q Consensus 60 ~~f~~em~~GL~~~~~s~l~MLPS~v~~lP~G~E~G~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t 139 (402)
+.+.+++.+-|+++.. | .+.| .+|+.|+||||.|+++.+....+...+... .++.+ ++..+
T Consensus 6 ~~~~~~~~~~~~~~~~--------~-~~~~------~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~--~~~~~--~~~~~ 66 (405)
T PTZ00288 6 EIFLEQLAEELKTDAS--------W-SSGP------IFVGCDVGGTNARVGFAREVQHDDSGVHII--YVRFN--VTKTD 66 (405)
T ss_pred HHHHHHHHHHhccCcc--------c-ccCC------eEEEEEecCCceEEEEEeccCCCCCceeEE--EEecc--ccccc
Confidence 4566677777766421 1 1223 489999999999999999832211111111 22333 23345
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCCCCCCceeeeeeeeeee--eeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHH
Q 015705 140 SHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFP--VRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMER 217 (402)
Q Consensus 140 ~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~lpLGfTFSFP--~~Q~~i~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r 217 (402)
..++.+++++-+....+....- +....+ +|+.| +.... -.|...+|.-.+..++. .-.+
T Consensus 67 ~~~~~~~~~~~~~~l~~~~~~~------~~~~~a-~iAvAGPV~~~~-~~~~~~~~~~~~~lTNl-pw~i---------- 127 (405)
T PTZ00288 67 IRELLEFFDEVLQKLKKNLSFI------QRVAAG-AISVPGPVTGGQ-LAGPFNNLKGIARLTDY-PVEL---------- 127 (405)
T ss_pred HHHHHHHHHHHHHHHHhcCccc------cCcCeE-EEEEeCceeCCE-eeccccccccccccCCC-Cchh----------
Confidence 6788888888777765542210 112233 67765 43211 12345788766666662 1111
Q ss_pred cCCCceEEEEEechhHhhhccccc--------------------------------CCCceEEEEeecCeeeeeecccCC
Q 015705 218 IGLDMRVAALVNDTIGTLAGGRYH--------------------------------NKDAIAAVILGTGTNAAYVERAHA 265 (402)
Q Consensus 218 ~~l~v~vvAIvNDTVaTLla~ay~--------------------------------~~~~~iGlIlGTGtNacY~E~~~~ 265 (402)
++.+-+.++||=.|.=.+.... .....+-+-.|||..+|++.+...
T Consensus 128 --~~~~~~~liNDfeA~aygi~~l~~~~~~~~~f~~~~~~~~~~~l~~~~~~g~~~~~~~~~Vlg~GTGLG~alli~~~l 205 (405)
T PTZ00288 128 --FPPGRSALLNDLEAGAYGVLAVSNAGRLSEYFKVMWKGTQWDALSEGKPAGSVIGRGRCMVLAPGTGLGSSLIHYVGV 205 (405)
T ss_pred --cCCCeEEEEEhHHHHhCcccccChhhcccccccccccccceeeecCCCCCcccCCCCCEEEEEeccceeEEEEECCee
Confidence 5666789999976654443321 112347889999999999976431
Q ss_pred CCccCCCCCCCCcEEEEeccCCcCCCCCCCC--ccchhhcccCCCC---------CcceeeeeccccchhHHHHHH
Q 015705 266 IPKWHGLLPKSGEMVINMEWGNFRSSHLPLT--EYDEALDTESLNP---------GEQIFEKIISGMYLGEIVRRV 330 (402)
Q Consensus 266 I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T--~~D~~lD~~S~nP---------G~q~fEKmiSG~YLGEivRli 330 (402)
+ .+..++=+|.|...-+.-|.+ .+...+=+.-... ..-.+|.++||+=|-.+.|..
T Consensus 206 ~---------~G~~~~agEgGHv~~~~~~~~~~~~g~~l~~~l~~~~~~~g~~~~~~vs~E~v~SG~GL~~ly~~l 272 (405)
T PTZ00288 206 S---------DQYIVIPLECGHLSISWPANEDSDYVQALAGYLASKALSKGIDSTVYPIYEDIVSGRGLEFNYAYE 272 (405)
T ss_pred c---------CCcccccccccceeeccCCCCccchhHHHHHHHHhhhccccccccCceeEeEEecHHHHHHHHHHH
Confidence 1 233567777776532111222 2112110100011 123789999999998887753
No 20
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=97.82 E-value=0.00015 Score=79.08 Aligned_cols=186 Identities=18% Similarity=0.229 Sum_probs=98.2
Q ss_pred cccEEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHhcCCCCCCCCCceeeee
Q 015705 94 KGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (402)
Q Consensus 94 ~G~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~lpLG 173 (402)
-|-+|++|+||||.|++++.- ++ .+... ++++-+. |+.+.+.|.+|+++.+.. ..-.+|
T Consensus 17 ~~~~L~iDIGGT~ir~al~~~--~g-~i~~~--~~~~t~~----------~~~~~~~i~~~l~~~~~~------~~~~ig 75 (638)
T PRK14101 17 DGPRLLADVGGTNARFALETG--PG-EITQI--RVYPGAD----------YPTLTDAIRKYLKDVKIG------RVNHAA 75 (638)
T ss_pred CCCEEEEEcCchhheeeeecC--CC-cccce--eEEecCC----------CCCHHHHHHHHHHhcCCC------CcceEE
Confidence 355999999999999999842 22 22221 2333221 245667777777654321 122345
Q ss_pred eeeeeeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechhHhhhcc---------ccc---
Q 015705 174 FTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGG---------RYH--- 241 (402)
Q Consensus 174 fTFSFP~~Q~~i~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~vvAIvNDTVaTLla~---------ay~--- 241 (402)
+..-=|++...+.... +.|. + ++ +.|++. +.+.++.|.||.-+.-++- .+.
T Consensus 76 ig~pGpVd~~~~~~~n-l~w~--~--------~~-~~l~~~-----~g~~~v~l~ND~~aaA~ge~~l~~~e~~~~G~g~ 138 (638)
T PRK14101 76 IAIANPVDGDQVRMTN-HDWS--F--------SI-EATRRA-----LGFDTLLVVNDFTALAMALPGLTDAQRVQVGGGT 138 (638)
T ss_pred EEEecCccCCeeeecC-CCcE--e--------cH-HHHHHH-----cCCCeEEEEchHHHHHcCCccCCHHHeEEeCCCC
Confidence 5554555542111111 1231 1 22 333333 3456789999999988883 111
Q ss_pred CCCceEEEEeec--CeeeeeecccCCCCccCCCCCCCCcEEEEeccCCcCCCCCCCCccchhh-cccCCCCCcceeeeec
Q 015705 242 NKDAIAAVILGT--GTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEAL-DTESLNPGEQIFEKII 318 (402)
Q Consensus 242 ~~~~~iGlIlGT--GtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~l-D~~S~nPG~q~fEKmi 318 (402)
.....+.+++|| |...|-+.... .+.++.-+|+|...- .|.+.-...+ ..-..+.|.-.+|..+
T Consensus 139 ~~~~~~~~~lGtGTGlG~a~lv~~~-----------g~~~~~g~E~GH~~~--~~~~~~e~~~~~~~~~~~g~~~~E~~~ 205 (638)
T PRK14101 139 RRQNSVIGLLGPGTGLGVSGLIPAD-----------DRWIALGSEGGHASF--APQDEREDLVLQYARKKYPHVSFERVC 205 (638)
T ss_pred CCCCCcEEEEECCccceeeEEEecC-----------CeeEECCCCccccCC--CCCCHHHHHHHHHHHHhcCcceeeeec
Confidence 223457788755 56654332211 122444568876631 2222111111 0011233556799999
Q ss_pred cccchhHHHHHH
Q 015705 319 SGMYLGEIVRRV 330 (402)
Q Consensus 319 SG~YLGEivRli 330 (402)
||.-|..+.|..
T Consensus 206 Sg~gL~~~~~~~ 217 (638)
T PRK14101 206 AGPGMEIIYRAL 217 (638)
T ss_pred chhhHHHHHHHH
Confidence 999998888764
No 21
>PRK00292 glk glucokinase; Provisional
Probab=97.73 E-value=0.00063 Score=67.55 Aligned_cols=180 Identities=19% Similarity=0.237 Sum_probs=97.6
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHh-cCCCCCCCCCceeeeeee
Q 015705 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVAT-EGEGFHVSPGRQRELGFT 175 (402)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~-~~~~~~~~~~~~lpLGfT 175 (402)
+|++|+||||+|++++++.+. .+.. .+.++.+. ++.+.+.+.+++++ ... + ..|..
T Consensus 4 ~lgiDIGgT~i~~~l~~~~~~--~~~~--~~~~~~~~----------~~~~~~~l~~~l~~~~~~-------~--~~gig 60 (316)
T PRK00292 4 ALVGDIGGTNARFALCDWANG--EIEQ--IKTYATAD----------YPSLEDAIRAYLADEHGV-------Q--VRSAC 60 (316)
T ss_pred EEEEEcCccceEEEEEecCCC--ceee--eEEEecCC----------CCCHHHHHHHHHHhccCC-------C--CceEE
Confidence 799999999999999987432 1222 12344331 12245555666654 221 1 34566
Q ss_pred eee--eeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechhHhhhcccc------------c
Q 015705 176 FSF--PVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY------------H 241 (402)
Q Consensus 176 FSF--P~~Q~~i~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~vvAIvNDTVaTLla~ay------------~ 241 (402)
++. |++...+....+ .|. . + .+.|++. +.+..+.|.||.-+.-++-.+ .
T Consensus 61 Ig~pG~vd~~~i~~~n~-~w~---------~-~-~~~l~~~-----~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~ 123 (316)
T PRK00292 61 FAIAGPVDGDEVRMTNH-HWA---------F-S-IAAMKQE-----LGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGE 123 (316)
T ss_pred EEEeCcccCCEEEecCC-Ccc---------c-C-HHHHHHH-----hCCCeEEEEecHHHHHcccccCCHhheeEeCCCC
Confidence 666 454311111011 131 1 2 2344433 345446899999999888653 1
Q ss_pred C--CCceEEEEeecCeeeeeecccCCCCccCCCCCCCCcEEEEeccCCcCCCCCCCCccchhh-cccCCCCCcceeeeec
Q 015705 242 N--KDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEAL-DTESLNPGEQIFEKII 318 (402)
Q Consensus 242 ~--~~~~iGlIlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~l-D~~S~nPG~q~fEKmi 318 (402)
. .+..+.+.+|||..++.+.+- +. +....-.|+|... ..|..+-...+ ......-|.-.+|..+
T Consensus 124 ~~~~~~~~~v~~GTGiG~giv~~g-----~~------g~~g~agE~GH~~--~~~~~~~~~~~~~~~c~~~~~gclE~~~ 190 (316)
T PRK00292 124 PVPGAPIAVIGPGTGLGVAGLVPV-----DG------RWIVLPGEGGHVD--FAPRSEEEAQILQYLRAEFGHVSAERVL 190 (316)
T ss_pred CCCCCcEEEEEcCCcceEEEEEec-----CC------ceEEccCCccccc--CCCCChHHHHHHHHHHHhcCCceeEeee
Confidence 1 256788999999999998652 11 2234566777541 11111100000 0001122355899999
Q ss_pred cccchhHHHHH
Q 015705 319 SGMYLGEIVRR 329 (402)
Q Consensus 319 SG~YLGEivRl 329 (402)
||.=|.++.|.
T Consensus 191 Sg~~L~~~~~~ 201 (316)
T PRK00292 191 SGPGLVNLYRA 201 (316)
T ss_pred cHHhHHHHHHH
Confidence 99988666553
No 22
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=97.41 E-value=0.00082 Score=66.94 Aligned_cols=185 Identities=19% Similarity=0.244 Sum_probs=96.4
Q ss_pred EEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHhcCCCCCCCCCceeeeeeeee
Q 015705 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (402)
Q Consensus 98 LAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~lpLGfTFS 177 (402)
|++|+||||.|+++++-.+. ...+ . +. +. + +.++-+.+.|.+|+++.+.... ...--.|+..+
T Consensus 1 l~~DIGGT~i~~glvd~~g~--~l~~-~-~~---~~---~----~~~~~l~~~i~~~l~~~~~~~~---~~~~~~~Igi~ 63 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIAPG--EISQ-A-KT---YS---G----LDFPSLEAVVRVYLEEHKVELK---DPIAKGCFAIA 63 (316)
T ss_pred CeEecCcceeeEEEEecCCC--ceee-e-EE---Ee---c----CCCCCHHHHHHHHHHhcccccC---CCcCeEEEEEe
Confidence 68999999999999965332 1111 1 11 11 0 1234555666667665432100 01223677777
Q ss_pred eeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechhHhhhcc--------ccc----CCCc
Q 015705 178 FPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGG--------RYH----NKDA 245 (402)
Q Consensus 178 FP~~Q~~i~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~vvAIvNDTVaTLla~--------ay~----~~~~ 245 (402)
-|++...+... -+.|. .++. .|++. +.+..+.|.||.-+.-++- .+. ..+.
T Consensus 64 Gpv~~~~v~~~-nl~w~----------~~~~-~l~~~-----~g~~~V~l~ND~naaa~ge~~l~~~~~~~~g~~~~~~~ 126 (316)
T TIGR00749 64 CPITGDWVAMT-NHTWA----------FSIA-ELKQN-----LGFSHLEIINDFTAVSYAIPGLKKEDLIQFGGAEPVEG 126 (316)
T ss_pred CcccCCEEEec-CCCCe----------eCHH-HHHHh-----cCCCeEEEEecHHHHHcCCCCCCHHHeEEeCCCCCCCC
Confidence 78743111111 11231 2332 33332 3444679999999988884 332 2244
Q ss_pred eEEEEe--ecCeeeeeecccCCCCccCCCCCCCCcEEEEeccCCcCCCCCCCCccchh----hcccCCCCCcceeeeecc
Q 015705 246 IAAVIL--GTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEA----LDTESLNPGEQIFEKIIS 319 (402)
Q Consensus 246 ~iGlIl--GTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~----lD~~S~nPG~q~fEKmiS 319 (402)
.+.+++ |||...+.+.+.. ++ +-...-.|+|... ..|.+.-+.. +.... +.-.+|...|
T Consensus 127 ~~~v~lGtGtG~G~~~vi~~~-----~g-----~l~~~agE~GH~~--~~~~~~~~~~~~~~l~~~~---~~g~~E~~~S 191 (316)
T TIGR00749 127 KPIAILGAGTGLGVAHLIHQV-----DG-----RWVVLPGEGGHVD--FAPNSELEAIILEYLRAKI---GHVSAERVLS 191 (316)
T ss_pred CcEEEEecCCCceeeEEEEcC-----CC-----CEEECCCCccccc--CCCCCHHHHHHHHHHHHhc---CCceeeeeec
Confidence 678899 6666666555310 01 1123455666531 1122211111 11222 4457999999
Q ss_pred ccchhHHHHHHH
Q 015705 320 GMYLGEIVRRVL 331 (402)
Q Consensus 320 G~YLGEivRlil 331 (402)
|.-|..+.|...
T Consensus 192 g~gl~~~~~~~~ 203 (316)
T TIGR00749 192 GPGLVNIYEALV 203 (316)
T ss_pred HHHHHHHHHHHH
Confidence 999988888653
No 23
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=97.22 E-value=0.002 Score=52.57 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=29.7
Q ss_pred cEEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHH
Q 015705 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAK 153 (402)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~ 153 (402)
.+|+||+|||+.++++++-.|+ +.... +...+. +.+++++.+.+.+.+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~---~~~~~--~~~~~~-----~~~~~~~~l~~~i~~ 49 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGK---LADPL--EVIPRT-----NKEADAARLKKLIKK 49 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCC---EecCE--EEEEec-----CcchHHHHHHHHHHH
Confidence 4899999999999999964332 22111 111111 345677777776655
No 24
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=96.90 E-value=0.003 Score=63.63 Aligned_cols=184 Identities=22% Similarity=0.249 Sum_probs=101.6
Q ss_pred EEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHhcCCCCCCCCCceeeeeeeee
Q 015705 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (402)
Q Consensus 98 LAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~lpLGfTFS 177 (402)
|+-|+||||-|+++++..+....... .+.|+ +.+...|-+.+++.+.+. ..+ ..-|-.-+|+
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~~~~~~~--~~~~~------~~~~~s~~~~l~~~l~~~--~~~--------~~~p~~~~ia 62 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGGPLQLID--IRRYP------SADFPSFEDALADYLAEL--DAG--------GPEPDSACIA 62 (316)
T ss_dssp EEEEEETTEEEEEEEECTCGG-EEEE--EEEEE------GCCCCHHHHHHHHHHHHT--CHH--------HTCEEEEEEE
T ss_pred CeEEeCcccEEEEEEEcCCCCccccc--cEEEe------cCCcCCHHHHHHHHHHhc--ccC--------CCccceEEEE
Confidence 68899999999999988654311112 12333 223445555555544432 111 1124455666
Q ss_pred ee--eeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechhHhhhccccc-------------C
Q 015705 178 FP--VRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH-------------N 242 (402)
Q Consensus 178 FP--~~Q~~i~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~vvAIvNDTVaTLla~ay~-------------~ 242 (402)
.+ ++. ++.++.+|. +.++. +.|.+ .+.++-+.++||=.|.=.+.-.. +
T Consensus 63 vAGPV~~---~~~~lTN~~--W~i~~-----------~~l~~-~lg~~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~ 125 (316)
T PF02685_consen 63 VAGPVRD---GKVRLTNLP--WTIDA-----------DELAQ-RLGIPRVRLINDFEAQAYGLPALDPEDLVTLQPGEPD 125 (316)
T ss_dssp ESS-EET---TCEE-SSSC--CEEEH-----------HHCHC-CCT-TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESS
T ss_pred EecCccC---CEEEecCCC--ccccH-----------HHHHH-HhCCceEEEEcccchheeccCCCCHHHeeeccCCCCC
Confidence 64 554 566776663 44433 23332 34444679999977764433221 2
Q ss_pred CCceEEE-EeecCeeeeeecccCCCCccCCCCCCCCcEEEEeccCCcCCCCCCCCccchhhcc-cCCCCCcceeeeeccc
Q 015705 243 KDAIAAV-ILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDT-ESLNPGEQIFEKIISG 320 (402)
Q Consensus 243 ~~~~iGl-IlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~lD~-~S~nPG~q~fEKmiSG 320 (402)
+...+.+ =.|||.+.|++.+.. .+..++-||.|.-+ .-|+++.+..+=+ -...-|.=..|..+||
T Consensus 126 ~~~~~~Vig~GTGLG~a~l~~~~-----------~~~~v~~sEgGH~~--fap~~~~e~~l~~~l~~~~~~vs~E~vlSG 192 (316)
T PF02685_consen 126 PGGPRAVIGPGTGLGVALLVPDG-----------DGYYVLPSEGGHVD--FAPRTDEEAELLRFLRRRYGRVSVERVLSG 192 (316)
T ss_dssp TTS-EEEEEESSSEEEEEEEEET-----------TEEEEEEE-GGGSB-----SSHHHHHHHHHHHHHCTS-BHHHCSSH
T ss_pred CCCcEEEEEcCCCcEEEEEEecC-----------CceEeCCCcccccc--CCCCCHHHHHHHHHHHHhcCCceeEeecch
Confidence 2333333 369999999999842 24569999999763 4567765543321 0111155688999999
Q ss_pred cchhHHHHH
Q 015705 321 MYLGEIVRR 329 (402)
Q Consensus 321 ~YLGEivRl 329 (402)
+=|..|.+-
T Consensus 193 ~GL~~ly~~ 201 (316)
T PF02685_consen 193 RGLENLYRF 201 (316)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 877666553
No 25
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=96.03 E-value=0.096 Score=50.71 Aligned_cols=137 Identities=20% Similarity=0.275 Sum_probs=80.4
Q ss_pred EEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHhcCCCCCCCCCceeeeeeeee
Q 015705 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (402)
Q Consensus 98 LAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~lpLGfTFS 177 (402)
|.||-|||..|+++++.+|+ +... ...-|..+.....++...-|.+-+.+.+.+.+... ..+. .++|.
T Consensus 1 lGIDgGgTkt~~vl~d~~g~---il~~---~~~~~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~-----~~i~-~~~~g 68 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGN---ILGR---GKGGGANYNSVGFEEAMENIKEAIEEALSQAGLSP-----DDIA-AICIG 68 (271)
T ss_dssp EEEEECSSEEEEEEEETTSE---EEEE---EEES-TTHHHHHHHHHHHHHHHHHHHHHHHHTTST-----TCCC-EEEEE
T ss_pred CEEeeChheeeeEEEeCCCC---EEEE---EEeCCCCCCCCCcchhhhHHHHHHHHHHHHcCCCc-----cccc-eeeee
Confidence 68999999999999987553 2222 22234444333356677778888888888766431 1110 00011
Q ss_pred eeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechhHhhhcccccCCCceEEEEeecCeee
Q 015705 178 FPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNA 257 (402)
Q Consensus 178 FP~~Q~~i~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~vvAIvNDTVaTLla~ay~~~~~~iGlIlGTGtNa 257 (402)
.-|+...+... .+.+.+.+. -+.+.||++..|.++.- ..-|-+|-|||+++
T Consensus 69 ----------------~aG~~~~~~~~-----~~~~~~~~~-----~v~~~~Da~~al~~~~~---~~giv~I~GTGS~~ 119 (271)
T PF01869_consen 69 ----------------AAGYGRAGDEQ-----EFQEEIVRS-----EVIVVNDAAIALYGATA---EDGIVVIAGTGSIA 119 (271)
T ss_dssp ----------------EEEEEETTTTT-----HHHHHHHHH-----EEEEEEHHHHHHHHHST---SSEEEEEESSSEEE
T ss_pred ----------------EeeecCccccc-----chhhcceEE-----EEEEEHHHHHHhCCCCC---CcEEEEEcCCCceE
Confidence 01233333221 122222211 56889999887777644 36788999999999
Q ss_pred eeecccCCCCccCCCCCCCCcEEEEeccCCc
Q 015705 258 AYVERAHAIPKWHGLLPKSGEMVINMEWGNF 288 (402)
Q Consensus 258 cY~E~~~~I~k~~~~~~~~~~miINtEwG~F 288 (402)
..+.+ ++++.-.--||.+
T Consensus 120 ~~~~~-------------~g~~~r~gG~G~~ 137 (271)
T PF01869_consen 120 YGRDR-------------DGRVIRFGGWGHC 137 (271)
T ss_dssp EEEET-------------TSEEEEEEESCTT
T ss_pred EEEEc-------------CCcEEEeCCCCCC
Confidence 99763 2345656668875
No 26
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=95.55 E-value=0.062 Score=51.14 Aligned_cols=59 Identities=19% Similarity=0.434 Sum_probs=42.0
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeeeecc--C-ccccccCchHHHHHHHHHHHHHHHhc
Q 015705 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--P-PHLMTGSSHELFDYIAAALAKFVATE 158 (402)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~I--p-~~~~~~t~~~LFd~IA~~I~~fl~~~ 158 (402)
||+||+|.|+.|+++++-.|+ ++...+..++. | +.....+.+++++.+.+++.+.+++.
T Consensus 2 ~lgiDiGTts~K~~l~d~~g~---iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~ 63 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDEDGK---IVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQA 63 (245)
T ss_dssp EEEEEECSSEEEEEEEETTSC---EEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEcccceEEEEEeCCCC---EEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhc
Confidence 799999999999999984332 34333333432 2 12334478999999999999999876
No 27
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=95.32 E-value=0.15 Score=51.07 Aligned_cols=158 Identities=18% Similarity=0.121 Sum_probs=89.5
Q ss_pred cccEEEEEeCCceeEEEEEEEcCCcceeEE---EEeeeeccCccccccCchHHHHHHHHHHHHHHHhcCCCCCCCCCcee
Q 015705 94 KGLFYALDLGGTNFRVLRVQLGGREGRVVK---QEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQR 170 (402)
Q Consensus 94 ~G~fLAlDlGGTNlRV~~V~L~g~~~~~~~---~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~l 170 (402)
.|-|..+|=|+|.-|+.+|.= +++..-+ ....-|-||. +-+|++|++.+.+...+...+...++
T Consensus 2 ~~~y~GvEGgaT~s~~Vivd~--~~~~~~~a~~~~Tnh~~ig~-----------~~~~~rie~~i~~A~~k~g~d~~~~l 68 (336)
T KOG1794|consen 2 KDFYGGVEGGATCSRLVIVDE--DGTILGRAVGGGTNHWLIGS-----------TTCASRIEDMIREAKEKAGWDKKGPL 68 (336)
T ss_pred CceeEeecCCcceeEEEEECC--CCCEeeEeeccccccccCCc-----------hHHHHHHHHHHHHHHhhcCCCccCcc
Confidence 467899999999999999853 3221111 1111244442 44666666666654332211111111
Q ss_pred eeeeeeeeeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCC-ceEEEEEechhHhhhcccccCCCceEEE
Q 015705 171 ELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLD-MRVAALVNDTIGTLAGGRYHNKDAIAAV 249 (402)
Q Consensus 171 pLGfTFSFP~~Q~~i~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~-v~vvAIvNDTVaTLla~ay~~~~~~iGl 249 (402)
.+ =|...+++.-.|-++-|.+.|..+-.. .+=..|.||++++|.|+ +....-=|-|
T Consensus 69 --------------------r~--lgL~lSg~d~e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~-t~g~~~GiVL 125 (336)
T KOG1794|consen 69 --------------------RS--LGLGLSGTDQEDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAA-TPGGEGGIVL 125 (336)
T ss_pred --------------------ce--eeeecccCCchhHHHHHHHHHHHhccchhheeeeehhHHHHHhhc-CCCCCCcEEE
Confidence 11 123344555555566666665444222 44478999999999986 5544556889
Q ss_pred EeecCeeeeeecccCCCCccCCCCC-------------CCCcEEEEeccCC
Q 015705 250 ILGTGTNAAYVERAHAIPKWHGLLP-------------KSGEMVINMEWGN 287 (402)
Q Consensus 250 IlGTGtNacY~E~~~~I~k~~~~~~-------------~~~~miINtEwG~ 287 (402)
|-|||+||=-..+=....+-.+..+ ..-+|++..|=|.
T Consensus 126 iaGTgs~crl~~~DGs~~~~ggwg~~iGd~GSaywia~~Avq~vfda~dg~ 176 (336)
T KOG1794|consen 126 IAGTGSNCRLVNPDGSEKGAGGWGHMIGDGGSAYWIARQAVQMVFDAEDGF 176 (336)
T ss_pred EecCCceeEEECCCCCccCCCCCCCccCCCcchhhhhhhhhhheeehhcCc
Confidence 9999999866665444333322100 1235888887775
No 28
>PRK13318 pantothenate kinase; Reviewed
Probab=94.06 E-value=0.62 Score=45.20 Aligned_cols=96 Identities=21% Similarity=0.272 Sum_probs=49.3
Q ss_pred HhhhcccccCCCceEEEEeecCeeeeeecccCCCCccCCC-CCCCCcEEEEeccCCcCCCCCCCCccchhhcccCCCCCc
Q 015705 233 GTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGL-LPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGE 311 (402)
Q Consensus 233 aTLla~ay~~~~~~iGlIlGTGtNacY~E~~~~I~k~~~~-~~~~~~miINtEwG~Fg~~~lp~T~~D~~lD~~S~nPG~ 311 (402)
+.+++++...+...+-+-+||++-...+.+-.. +.+. .-..-.+-.|+=.. +...+|..+.+ .....+|.
T Consensus 113 a~~~aa~~~~~~~~ivid~GTA~t~d~v~~~g~---~~GG~I~PG~~l~~~aL~~--~ta~Lp~~~~~----~~~~~~g~ 183 (258)
T PRK13318 113 VNAVAAYELYGGPLIVVDFGTATTFDVVSAKGE---YLGGVIAPGINISADALFQ--RAAKLPRVEIT----KPDSVIGK 183 (258)
T ss_pred HHHHHHHHHcCCCEEEEEcCCceEEEEEcCCCc---EEEEEECccHHHHHHHHHh--hhhcCCCCcCC----CCCccCCC
Confidence 445554444455678889999999988854321 1110 00000011111110 01125544322 22345799
Q ss_pred ceeeeeccccchhHH--HHHHHHHHHHc
Q 015705 312 QIFEKIISGMYLGEI--VRRVLCRMAEE 337 (402)
Q Consensus 312 q~fEKmiSG~YLGEi--vRlill~l~~~ 337 (402)
..-|-+-||.|.|-+ ++.++.++.++
T Consensus 184 ~T~~ai~~G~~~~~~~~i~~~~~~~~~~ 211 (258)
T PRK13318 184 NTVEAMQSGIYYGYVGLVEGIVKRIKEE 211 (258)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999877643 33355555443
No 29
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=93.01 E-value=0.35 Score=51.88 Aligned_cols=60 Identities=17% Similarity=0.292 Sum_probs=43.0
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeeeecc--Cc-cccccCchHHHHHHHHHHHHHHHhcC
Q 015705 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PP-HLMTGSSHELFDYIAAALAKFVATEG 159 (402)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~I--p~-~~~~~t~~~LFd~IA~~I~~fl~~~~ 159 (402)
+|+||+|+|+.|+++++..|+ ++...+.+++. |. .....+.+++++-+.+++.+.+++.+
T Consensus 2 ~lgID~GTts~Ka~l~d~~G~---i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~ 64 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDSTGD---ILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESK 64 (541)
T ss_pred EEEEEecCcCEEEEEEcCCCC---EEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcC
Confidence 789999999999999976543 33333333332 32 23345788899999999999998754
No 30
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=92.77 E-value=0.37 Score=51.09 Aligned_cols=60 Identities=13% Similarity=0.297 Sum_probs=42.2
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeeeec--cCc-cccccCchHHHHHHHHHHHHHHHhcC
Q 015705 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVS--IPP-HLMTGSSHELFDYIAAALAKFVATEG 159 (402)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~--Ip~-~~~~~t~~~LFd~IA~~I~~fl~~~~ 159 (402)
+|+||+|+|+.|+++++..|+ ++...+.+++ .|. .....+.+++++-+.+++.+.+++..
T Consensus 2 ~lgiDiGtt~~K~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~ 64 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFEENGK---IVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINLE 64 (505)
T ss_pred EEEEeccccceEEEEEcCCCC---EEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhCC
Confidence 689999999999999976443 3443433343 222 22334678899999999999987643
No 31
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=92.66 E-value=1.1 Score=45.10 Aligned_cols=122 Identities=21% Similarity=0.216 Sum_probs=76.4
Q ss_pred cEEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHhcCCCCCCCCCceeeeeee
Q 015705 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (402)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~lpLGfT 175 (402)
-||.||=|||..|..+-+..|+ +.-+ -..=|.++.+...++=+.-|.+-|.+.+++.+.+. -.+-
T Consensus 6 ~~lGVDGGGTkt~a~l~~~~g~---vlg~---g~sGpAN~~~~~~e~A~~ni~~ai~~A~~~aG~~~---------~~i~ 70 (301)
T COG2971 6 YFLGVDGGGTKTRAVLADEDGN---VLGR---GKSGPANIQLVGKEEAVRNIKDAIREALDEAGLKP---------DEIA 70 (301)
T ss_pred EEEEEccCCcceEEEEEcCCCc---EEEE---eccCCceecccchHHHHHHHHHHHHHHHHhcCCCH---------HHhC
Confidence 4899999999999988775442 2222 22336677666668888899999999998766432 1111
Q ss_pred eeeeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCce-EEEEEechhHhhhcccccCCCceEEEEeecC
Q 015705 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMR-VAALVNDTIGTLAGGRYHNKDAIAAVILGTG 254 (402)
Q Consensus 176 FSFP~~Q~~i~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~-vvAIvNDTVaTLla~ay~~~~~~iGlIlGTG 254 (402)
++.+-- +..|.+.....+. + .+.+++- -+-|.||....|.++-..+.- +=+|+|||
T Consensus 71 ~~~agl-------------------a~ag~~~~~~~~~-~-~~~l~~a~~v~v~~Dg~iAl~ga~~~~~G--ii~i~GTG 127 (301)
T COG2971 71 AIVAGL-------------------ALAGANVEEAREE-L-ERLLPFAGKVDVENDGLIALRGALGDDDG--IIVIAGTG 127 (301)
T ss_pred ceeeee-------------------eccCcchhHHHHH-H-HHhcCccceEEEecChHHHHhhccCCCCC--EEEEecCC
Confidence 111110 1234444333222 2 4455554 678999999999997655533 24688888
Q ss_pred e
Q 015705 255 T 255 (402)
Q Consensus 255 t 255 (402)
+
T Consensus 128 S 128 (301)
T COG2971 128 S 128 (301)
T ss_pred e
Confidence 4
No 32
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=92.47 E-value=0.37 Score=50.91 Aligned_cols=60 Identities=22% Similarity=0.377 Sum_probs=41.8
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeeeecc--Ccc-ccccCchHHHHHHHHHHHHHHHhcC
Q 015705 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PPH-LMTGSSHELFDYIAAALAKFVATEG 159 (402)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~I--p~~-~~~~t~~~LFd~IA~~I~~fl~~~~ 159 (402)
+|+||+|+|+.|++++...|+ ++...+..++. |.. ....+.+++++.+.+++.+.+.+.+
T Consensus 3 ~lgiDiGtt~iKa~l~d~~g~---~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~ 65 (493)
T TIGR01311 3 ILAIDQGTTSSRAIVFDKDGN---IVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAG 65 (493)
T ss_pred EEEEecCCCceEEEEECCCCC---EEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 789999999999999976543 33333333332 221 1123578899999999999998764
No 33
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=92.24 E-value=0.53 Score=50.16 Aligned_cols=61 Identities=18% Similarity=0.228 Sum_probs=43.3
Q ss_pred cEEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccC-----ccccccCchHHHHHHHHHHHHHHHhcC
Q 015705 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIP-----PHLMTGSSHELFDYIAAALAKFVATEG 159 (402)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip-----~~~~~~t~~~LFd~IA~~I~~fl~~~~ 159 (402)
-+|+||+|.|+.|+++++..|+ ++...+..|+.+ ......+.+++++-+.+++.+.+++.+
T Consensus 4 ~~lgID~GTts~Ka~l~d~~G~---~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~ 69 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDLNGN---QIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAG 69 (520)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcC
Confidence 3789999999999999987553 333333344322 122344688999999999999987654
No 34
>PRK00047 glpK glycerol kinase; Provisional
Probab=91.89 E-value=0.45 Score=50.40 Aligned_cols=61 Identities=23% Similarity=0.365 Sum_probs=42.8
Q ss_pred cEEEEEeCCceeEEEEEEEcCCcceeEEEEeeeec--cCcc-ccccCchHHHHHHHHHHHHHHHhcC
Q 015705 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVS--IPPH-LMTGSSHELFDYIAAALAKFVATEG 159 (402)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~--Ip~~-~~~~t~~~LFd~IA~~I~~fl~~~~ 159 (402)
-+|+||+|+|+.|+++++..|+ ++...+.+|+ .|.. ....+.+++++-+.+++.+.+++.+
T Consensus 6 ~~lgiD~GTts~Ka~l~d~~g~---~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~ 69 (498)
T PRK00047 6 YILALDQGTTSSRAIIFDHDGN---IVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAG 69 (498)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 3789999999999999976553 3333333443 2321 2234688999999999999987654
No 35
>PRK15027 xylulokinase; Provisional
Probab=91.59 E-value=0.61 Score=49.19 Aligned_cols=59 Identities=19% Similarity=0.397 Sum_probs=43.6
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeeeecc--C-ccccccCchHHHHHHHHHHHHHHHhc
Q 015705 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--P-PHLMTGSSHELFDYIAAALAKFVATE 158 (402)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~I--p-~~~~~~t~~~LFd~IA~~I~~fl~~~ 158 (402)
||+||+|.|+.|+++++..| .++...+..+++ | ......+.+++++.+.+++++.+++.
T Consensus 2 ~lgID~GTts~Ka~l~d~~G---~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~ 63 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNEQG---EVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH 63 (484)
T ss_pred EEEEEecccceEEEEEcCCC---CEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhC
Confidence 89999999999999997644 344444445543 2 22334568899999999999999764
No 36
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=91.51 E-value=0.65 Score=49.71 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=44.6
Q ss_pred EEEEEeCCceeEEEEEE-EcCCcceeEEEEeeeec-------cC-------ccccccCchHHHHHHHHHHHHHHHhcC
Q 015705 97 FYALDLGGTNFRVLRVQ-LGGREGRVVKQEFEEVS-------IP-------PHLMTGSSHELFDYIAAALAKFVATEG 159 (402)
Q Consensus 97 fLAlDlGGTNlRV~~V~-L~g~~~~~~~~~~~~~~-------Ip-------~~~~~~t~~~LFd~IA~~I~~fl~~~~ 159 (402)
+|+||+|.|+.|+++++ ..|+ ++...++.++ .| ......+.+++++-+.+++.+.+++.+
T Consensus 3 ~lgiD~GTss~Ka~l~d~~~G~---~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~~~ 77 (536)
T TIGR01234 3 AIGVDFGTLSGRALAVDVATGE---EIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAELG 77 (536)
T ss_pred EEEEecCCCceEEEEEECCCCc---EeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHHcC
Confidence 78999999999999998 6664 3333444454 23 334455789999999999999988754
No 37
>PRK10331 L-fuculokinase; Provisional
Probab=90.80 E-value=0.96 Score=47.53 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=42.0
Q ss_pred cEEEEEeCCceeEEEEEEEcCCcceeEEEEeeeec--c--Cc-cccccCchHHHHHHHHHHHHHHHhc
Q 015705 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVS--I--PP-HLMTGSSHELFDYIAAALAKFVATE 158 (402)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~--I--p~-~~~~~t~~~LFd~IA~~I~~fl~~~ 158 (402)
-+|+||+|.|+.|++++..+|+ +....+..++ + |. .....+.+++++-+.+++.+.+++.
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~G~---~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~ 67 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQGK---IVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL 67 (470)
T ss_pred eEEEEecCCCceEEEEEcCCCc---EEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhC
Confidence 3789999999999999987653 3333333332 1 11 1234467889999999999998753
No 38
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=90.70 E-value=0.61 Score=48.68 Aligned_cols=60 Identities=18% Similarity=0.340 Sum_probs=42.3
Q ss_pred EEEEeCCceeEEEEEEEcCCcceeEEEEeeeecc---CccccccCchHHHHHHHHHHHHHHHhcCC
Q 015705 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI---PPHLMTGSSHELFDYIAAALAKFVATEGE 160 (402)
Q Consensus 98 LAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~I---p~~~~~~t~~~LFd~IA~~I~~fl~~~~~ 160 (402)
|+||+|.|++|++++++.|+ ++...+..++. ++.....+.+++++-+++++.+++++.+.
T Consensus 1 lgIDiGtt~ik~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~ 63 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGE---VIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQASE 63 (481)
T ss_pred CceeecCcceEEEEECCCCC---EEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcCC
Confidence 58999999999999987654 33333333332 11222446888999999999999987653
No 39
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=90.54 E-value=0.95 Score=48.06 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=42.9
Q ss_pred cEEEEEeCCceeEEEEEEEcCCcceeEEEEeeeecc--C-ccccccCchHHHHHHHHHHHHHHHhcC
Q 015705 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--P-PHLMTGSSHELFDYIAAALAKFVATEG 159 (402)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~I--p-~~~~~~t~~~LFd~IA~~I~~fl~~~~ 159 (402)
-+|+||+|.|+.|+++++..|+ ++...+..+++ | +.....+.+++|+-+.+++.+.+++..
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~G~---~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~ 66 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEKGN---VVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLR 66 (504)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 3789999999999999986553 33434334432 2 222344678899999999999987654
No 40
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=90.47 E-value=0.77 Score=48.89 Aligned_cols=61 Identities=21% Similarity=0.329 Sum_probs=44.3
Q ss_pred cEEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccC--c-cccccCchHHHHHHHHHHHHHHHhc
Q 015705 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIP--P-HLMTGSSHELFDYIAAALAKFVATE 158 (402)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip--~-~~~~~t~~~LFd~IA~~I~~fl~~~ 158 (402)
-||+||+|.|+.|+.+++.++ ..++......+.+. . .....+.++++..+.++|.+.+++.
T Consensus 5 ~~lgIDiGTt~~Kavl~d~~~--~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~ 68 (502)
T COG1070 5 YVLGIDIGTTSVKAVLFDEDG--GEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEES 68 (502)
T ss_pred EEEEEEcCCCcEEEEEEeCCC--CeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhc
Confidence 489999999999999999874 23333333233322 1 1334578999999999999999885
No 41
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=89.41 E-value=1.3 Score=46.59 Aligned_cols=58 Identities=16% Similarity=0.254 Sum_probs=41.4
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeeeecc----C-ccccccCchHHHHHHHHHHHHHHHh
Q 015705 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI----P-PHLMTGSSHELFDYIAAALAKFVAT 157 (402)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~I----p-~~~~~~t~~~LFd~IA~~I~~fl~~ 157 (402)
+|+||+|.|+.|+++++..|+ ++...+.+++. | +.....+.+++++-+.+++.+.+.+
T Consensus 3 ilgiD~GTss~K~~l~d~~g~---~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~ 65 (465)
T TIGR02628 3 ILVLDCGATNLRAIAINRQGK---IVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE 65 (465)
T ss_pred EEEEecCCCcEEEEEEcCCCC---EEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh
Confidence 689999999999999986543 34444333331 1 2233446889999999999999864
No 42
>PLN02295 glycerol kinase
Probab=89.36 E-value=1.2 Score=47.43 Aligned_cols=61 Identities=20% Similarity=0.250 Sum_probs=43.7
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeeeecc--Cc-cccccCchHHHHHHHHHHHHHHHhcCC
Q 015705 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PP-HLMTGSSHELFDYIAAALAKFVATEGE 160 (402)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~I--p~-~~~~~t~~~LFd~IA~~I~~fl~~~~~ 160 (402)
+|+||+|.|+.|+++++..|+ ++...+..+++ |+ .....+.+++++-+.++|.+.+++.+.
T Consensus 2 vlgID~GTts~Ka~l~d~~G~---~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~~ 65 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDRDAR---PVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAAA 65 (512)
T ss_pred EEEEecCCCceEEEEECCCCC---EEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCC
Confidence 689999999999999976553 33333334432 32 233457889999999999999987643
No 43
>PRK04123 ribulokinase; Provisional
Probab=87.19 E-value=2.5 Score=45.33 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=41.4
Q ss_pred cEEEEEeCCceeEEEEEEE-cCCcceeEEEEeeeecc--------Cc-cccccCchHHHHHHHHHHHHHHHhcC
Q 015705 96 LFYALDLGGTNFRVLRVQL-GGREGRVVKQEFEEVSI--------PP-HLMTGSSHELFDYIAAALAKFVATEG 159 (402)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~L-~g~~~~~~~~~~~~~~I--------p~-~~~~~t~~~LFd~IA~~I~~fl~~~~ 159 (402)
-||+||+|.|+.|+++++. +|+ ++...+..|+. |. .....+.+++++-+.++|.+.+++.+
T Consensus 4 ~~lgiD~GTts~Ka~l~d~~~g~---~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~~~ 74 (548)
T PRK04123 4 YVIGLDFGTDSVRALLVDCATGE---ELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKEAG 74 (548)
T ss_pred EEEEEecCCCceEEEEEECCCCc---EeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHHcC
Confidence 4899999999999999985 553 33333334431 21 12234577889999999999887644
No 44
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=86.35 E-value=28 Score=35.29 Aligned_cols=133 Identities=14% Similarity=0.192 Sum_probs=72.1
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCc-cccccCchHHHHHHHHHHHHHHHh----cCCCCCCCCCceee
Q 015705 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPP-HLMTGSSHELFDYIAAALAKFVAT----EGEGFHVSPGRQRE 171 (402)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~-~~~~~t~~~LFd~IA~~I~~fl~~----~~~~~~~~~~~~lp 171 (402)
+++||+|-+++|++..+..+++...+.-. -..|. .+.+|.-.+ .+-+++.|.+.+++ .+... +..-
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~~---~~~~~~gi~~G~I~d-~~~~~~~i~~al~~~e~~~~~~i-----~~v~ 72 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLEDGELNIIGV---GTHPSRGIKKGVIND-IEAAVGSIQRAIEAAELMAGCEI-----RSVI 72 (371)
T ss_pred EEEEEeccceEEEEEEEEcCCCCEEEEEE---EEecCCCccCcEEEc-HHHHHHHHHHHHHHHHHHhCCcc-----cEEE
Confidence 68999999999999998865442222211 12333 345554333 34456666666654 23221 2222
Q ss_pred eee------------eeeeee---ee--------------ccCCceEEEecccceecCC---------------------
Q 015705 172 LGF------------TFSFPV---RQ--------------TSIASGDLIKWTKGFSIED--------------------- 201 (402)
Q Consensus 172 LGf------------TFSFP~---~Q--------------~~i~~g~Li~wtKgF~~~~--------------------- 201 (402)
+++ +.++|- .+ ...+.-.|-..-.+|.+.+
T Consensus 73 ~~v~g~~v~~~~~~~~i~~~~~~i~~~di~~~~~~~~~~~~~~~~~il~~~~~~~~vD~~~~~~~p~g~~~~~l~~~v~l 152 (371)
T TIGR01174 73 VSISGAHIKSQNSIGVVAIKDKEVTQEDIERVLETAKAVAIPNDQEILHVIPQEYILDDQEGIKNPLGMSGVRLEVEVHI 152 (371)
T ss_pred EEEcccceEEEeeeEEEEcCCCeeCHHHHHHHHHHhhcccCCCCCEEEEEeceeEEECCCCCcCCCCCCeeeEEEEEEEE
Confidence 332 334441 10 1122223333334554433
Q ss_pred -CCCCcHHHHHHHHHHHcCCCceEEEEEechhHhhhcccc
Q 015705 202 -TVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY 240 (402)
Q Consensus 202 -v~G~Dv~~lL~~al~r~~l~v~vvAIvNDTVaTLla~ay 240 (402)
+.-++.++-+.+++++.| +++..|+++.+|...+...
T Consensus 153 va~~~~~v~~~~~~~~~aG--l~~~~i~~~~~A~a~a~~~ 190 (371)
T TIGR01174 153 ITGSSTILRNLVKCVERCG--LEVDNIVLSGLASAIAVLT 190 (371)
T ss_pred EEEEHHHHHHHHHHHHHcC--CCeeeEEEhhhhhhhhhcC
Confidence 123467777778888776 4567789999998886543
No 45
>PRK13321 pantothenate kinase; Reviewed
Probab=86.16 E-value=1.8 Score=42.04 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=16.0
Q ss_pred EEEEEeCCceeEEEEEE
Q 015705 97 FYALDLGGTNFRVLRVQ 113 (402)
Q Consensus 97 fLAlDlGGTNlRV~~V~ 113 (402)
+|+||+|||++|+++++
T Consensus 2 iL~IDIGnT~ik~gl~~ 18 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD 18 (256)
T ss_pred EEEEEECCCeEEEEEEE
Confidence 68999999999999996
No 46
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=83.03 E-value=15 Score=36.63 Aligned_cols=101 Identities=16% Similarity=0.280 Sum_probs=59.7
Q ss_pred cEEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCcccc-ccCchHHHHHHHHHHHHHHHhcCCCCCCCCCceeeeee
Q 015705 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLM-TGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGF 174 (402)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~-~~t~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~lpLGf 174 (402)
.+++||+|.+++|++.++-.+++-.+. .....++|.+.. ++.-.+ .+-+++.|.+.+++.+... + -.
T Consensus 4 ~~vgiDIg~~~Ik~v~~~~~~~~~~v~--~~~~~~~p~~~i~~g~i~d-~~~~~~~l~~~~~~~~~~~-----k----~v 71 (348)
T TIGR01175 4 LLVGIDIGSTSVKVAQLKRSGDRYKLE--HYAVEPLPAGIFTEGHIVE-YQAVAEALKELLSELGINT-----K----KA 71 (348)
T ss_pred cEEEEEeccCeEEEEEEEecCCceEEE--EEEEEECCCCcccCCCccC-HHHHHHHHHHHHHHcCCCc-----c----eE
Confidence 589999999999998887544322222 233566776543 332111 2556777888877765321 1 24
Q ss_pred eeeeeeeeccCCceEEEecccceecCC-CCCCcHHHHHHHHHHH
Q 015705 175 TFSFPVRQTSIASGDLIKWTKGFSIED-TVGEDVVGELTKAMER 217 (402)
Q Consensus 175 TFSFP~~Q~~i~~g~Li~wtKgF~~~~-v~G~Dv~~lL~~al~r 217 (402)
.+++|..+. + +|-++++. +-.+++.+.+.-..++
T Consensus 72 ~~alp~~~~------~---~r~~~~p~~i~~~el~~~i~~e~~~ 106 (348)
T TIGR01175 72 ATAVPGSAV------I---TKVIPVPAGLDERELEFAVYIEASH 106 (348)
T ss_pred EEEecCCee------E---EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 566666552 1 22355665 5567777777644443
No 47
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=82.49 E-value=13 Score=36.39 Aligned_cols=115 Identities=21% Similarity=0.260 Sum_probs=63.0
Q ss_pred CCCCccccEEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 015705 89 PTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGR 168 (402)
Q Consensus 89 P~G~E~G~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~~~~~~~~~~ 168 (402)
|.-+.++.+++||+|-|+.|+...+..+. .... .....+.++.|.-.+ ++-....|..+++...... +.
T Consensus 18 ~~~~~~~~~~~iDiGSssi~~vv~~~~~~---~~~~---~~~~~~~vr~G~i~d-i~~a~~~i~~~~~~ae~~~----g~ 86 (267)
T PRK15080 18 PVATESPLKVGVDLGTANIVLAVLDEDGQ---PVAG---ALEWADVVRDGIVVD-FIGAVTIVRRLKATLEEKL----GR 86 (267)
T ss_pred CCCCCCCEEEEEEccCceEEEEEEcCCCC---EEEE---EeccccccCCCEEee-HHHHHHHHHHHHHHHHHHh----CC
Confidence 34456778999999999999988755332 1111 112222344443222 5666667777766321100 01
Q ss_pred eeeeeeeeeeeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechhHhhhcc
Q 015705 169 QRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGG 238 (402)
Q Consensus 169 ~lpLGfTFSFP~~Q~~i~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~vvAIvNDTVaTLla~ 238 (402)
..+--.+ +.|..++.. + ...+.+++++.|++ +..++++..|...+.
T Consensus 87 ~i~~v~~-~vp~~~~~~--------------------~-~~~~~~~~~~aGl~--~~~ii~e~~A~a~~~ 132 (267)
T PRK15080 87 ELTHAAT-AIPPGTSEG--------------------D-PRAIINVVESAGLE--VTHVLDEPTAAAAVL 132 (267)
T ss_pred CcCeEEE-EeCCCCCch--------------------h-HHHHHHHHHHcCCc--eEEEechHHHHHHHh
Confidence 1221223 566554310 1 12355777777755 567899999887653
No 48
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=81.00 E-value=2.8 Score=43.88 Aligned_cols=59 Identities=19% Similarity=0.065 Sum_probs=38.0
Q ss_pred EEEEeCCceeEEEEEEEcCCcceeE-EEEeeeeccCccc---cccCchHHHHHHHHHHHHHHH
Q 015705 98 YALDLGGTNFRVLRVQLGGREGRVV-KQEFEEVSIPPHL---MTGSSHELFDYIAAALAKFVA 156 (402)
Q Consensus 98 LAlDlGGTNlRV~~V~L~g~~~~~~-~~~~~~~~Ip~~~---~~~t~~~LFd~IA~~I~~fl~ 156 (402)
||||+|.|+.|++++...+++..+. ....+..+...+. ...+.+++++.+.+++++...
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 63 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDA 63 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhc
Confidence 6899999999999999975523333 2222222211111 123466899999999998865
No 49
>PRK13410 molecular chaperone DnaK; Provisional
Probab=79.71 E-value=5.5 Score=44.28 Aligned_cols=19 Identities=37% Similarity=0.471 Sum_probs=17.1
Q ss_pred ccEEEEEeCCceeEEEEEE
Q 015705 95 GLFYALDLGGTNFRVLRVQ 113 (402)
Q Consensus 95 G~fLAlDlGGTNlRV~~V~ 113 (402)
|..++||||.||-.|++++
T Consensus 2 ~~viGIDlGTt~s~va~~~ 20 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVME 20 (668)
T ss_pred CcEEEEEeCCCcEEEEEEE
Confidence 5689999999999999985
No 50
>CHL00094 dnaK heat shock protein 70
Probab=77.11 E-value=7.1 Score=42.83 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=16.3
Q ss_pred cEEEEEeCCceeEEEEEE
Q 015705 96 LFYALDLGGTNFRVLRVQ 113 (402)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~ 113 (402)
.+++||||.||..|+.++
T Consensus 3 ~viGIDlGTt~s~va~~~ 20 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVME 20 (621)
T ss_pred ceEEEEeCcccEEEEEEE
Confidence 579999999999999985
No 51
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=75.03 E-value=33 Score=34.86 Aligned_cols=102 Identities=23% Similarity=0.192 Sum_probs=69.5
Q ss_pred HcCCCceEEEEEechhHhhhcccccC-------------CCceEEEE-eecCeeeeeecccCCCCccCCCCCCCCcEEEE
Q 015705 217 RIGLDMRVAALVNDTIGTLAGGRYHN-------------KDAIAAVI-LGTGTNAAYVERAHAIPKWHGLLPKSGEMVIN 282 (402)
Q Consensus 217 r~~l~v~vvAIvNDTVaTLla~ay~~-------------~~~~iGlI-lGTGtNacY~E~~~~I~k~~~~~~~~~~miIN 282 (402)
|+.+.++=+.++||=+|.=++-.... ++.-+.+| =|||--.|++.+.. .+-+.+-
T Consensus 91 r~~Lgl~~v~liNDF~A~A~Ai~~l~~~dl~qigg~~~~~~a~~avlGPGTGLGVa~Lv~~~-----------~~w~~lp 159 (320)
T COG0837 91 RAELGLDHLSLINDFAAQALAIPRLGAEDLEQIGGGKPEPNAPRAVLGPGTGLGVAGLVPNG-----------GGWIPLP 159 (320)
T ss_pred HHhcCCCcEEEechHHHHHhhccccCHHHHHHhcCCCCCCCCceEEEcCCCCcceEEEEecC-----------CeeEecc
Confidence 44566777899999998877766642 23333322 36777788887743 2357788
Q ss_pred eccCCcCCCCCCCCccchhhcc-cCCCCCcceeeeeccccchhHHHHHHH
Q 015705 283 MEWGNFRSSHLPLTEYDEALDT-ESLNPGEQIFEKIISGMYLGEIVRRVL 331 (402)
Q Consensus 283 tEwG~Fg~~~lp~T~~D~~lD~-~S~nPG~q~fEKmiSG~YLGEivRlil 331 (402)
+|=|-- +.-|+|+-|.++=+ -..+-|.-.-|..+||+=|=-|.|-+.
T Consensus 160 ~EGGHv--df~P~~~~E~~i~~~l~~~~GrVS~Er~LSG~GL~~iY~al~ 207 (320)
T COG0837 160 GEGGHV--DFAPRSEREFQILEYLRARFGRVSAERVLSGPGLVNLYRALC 207 (320)
T ss_pred CCCccc--cCCCCCHHHHHHHHHHHHhcCccchhhhcccccHHHHHHHHH
Confidence 998865 35688988887643 233467778899999998866666543
No 52
>PRK13324 pantothenate kinase; Reviewed
Probab=73.06 E-value=23 Score=34.90 Aligned_cols=46 Identities=15% Similarity=0.385 Sum_probs=28.4
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHHH
Q 015705 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAA 150 (402)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~ 150 (402)
.|+||.|=||.++++.+ ++ .... .++++-.-...+.++++-++...
T Consensus 2 iL~iDiGNT~ik~gl~~--~~--~~~~----~~r~~t~~~~~t~de~~~~l~~~ 47 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFD--GD--RIVS----QIRYATSSVDSTSDQMGVFLRQA 47 (258)
T ss_pred EEEEEeCCCceEEEEEE--CC--EEEE----EEEEecCccccchHHHHHHHHHH
Confidence 58999999999999986 22 2222 35565422233556666555443
No 53
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=72.53 E-value=12 Score=41.61 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=16.8
Q ss_pred ccEEEEEeCCceeEEEEEE
Q 015705 95 GLFYALDLGGTNFRVLRVQ 113 (402)
Q Consensus 95 G~fLAlDlGGTNlRV~~V~ 113 (402)
|..++||||.||..|++++
T Consensus 41 ~~viGIDlGTt~s~va~~~ 59 (663)
T PTZ00400 41 GDIVGIDLGTTNSCVAIME 59 (663)
T ss_pred CcEEEEEECcccEEEEEEe
Confidence 4589999999999999874
No 54
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=72.34 E-value=37 Score=32.88 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=28.1
Q ss_pred EEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHH
Q 015705 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAA 149 (402)
Q Consensus 98 LAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~ 149 (402)
|++|.|=||+++++.+ ++ .... .|++|-+.. .+.+++..++..
T Consensus 2 L~iDiGNT~i~~g~~~--~~--~~~~----~~r~~t~~~-~t~de~~~~l~~ 44 (243)
T TIGR00671 2 LLIDVGNTRIVFALNS--GN--KVYQ----FWRLATNLM-KTYDEHSEFLKE 44 (243)
T ss_pred EEEEECCCcEEEEEEE--CC--EEEE----EEEecCCCc-cChHHHHHHHHH
Confidence 8999999999999985 22 2222 466665543 356676655544
No 55
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=71.12 E-value=19 Score=40.13 Aligned_cols=41 Identities=24% Similarity=0.213 Sum_probs=25.7
Q ss_pred ceEEEEEechhHhhhcccccCC--CceEEEEeecCeeeeeecc
Q 015705 222 MRVAALVNDTIGTLAGGRYHNK--DAIAAVILGTGTNAAYVER 262 (402)
Q Consensus 222 v~vvAIvNDTVaTLla~ay~~~--~~~iGlIlGTGtNacY~E~ 262 (402)
++|+.|+|+.+|.-++...... ...+=+=+|-||--.-+..
T Consensus 188 l~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~ 230 (657)
T PTZ00186 188 LNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLE 230 (657)
T ss_pred CCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEE
Confidence 5678999999999997655432 2223333566666544444
No 56
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=71.11 E-value=32 Score=37.28 Aligned_cols=97 Identities=18% Similarity=0.171 Sum_probs=62.2
Q ss_pred cccEEEEEeCCceeEEEEEEE-cCCcceeEEEEeeeeccCc-cccccCchHHHHHHHHHHHHHHHhcCCCCCCCCCceee
Q 015705 94 KGLFYALDLGGTNFRVLRVQL-GGREGRVVKQEFEEVSIPP-HLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRE 171 (402)
Q Consensus 94 ~G~fLAlDlGGTNlRV~~V~L-~g~~~~~~~~~~~~~~Ip~-~~~~~t~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~lp 171 (402)
..-+++||.|-|.-|+++.+- .++.. ...+..-...-|+ .....+.++++.-+.+||+.-.++-.... .-.
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l-~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~------~~~ 77 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGELL-SLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLN------IKV 77 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCccc-eeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhcccc------ccc
Confidence 456899999999999999973 22211 1111111111222 34566789999999999999887654332 123
Q ss_pred eeeeeeeeeeeccCCceEEEecccceecCC
Q 015705 172 LGFTFSFPVRQTSIASGDLIKWTKGFSIED 201 (402)
Q Consensus 172 LGfTFSFP~~Q~~i~~g~Li~wtKgF~~~~ 201 (402)
.|.|=|==+.| ....+-|.|....+.
T Consensus 78 ~~~~~igv~~q----r~~~v~w~~~tg~p~ 103 (516)
T KOG2517|consen 78 VGATCIGVVNQ----REGSVLWNKRTGEPL 103 (516)
T ss_pred cccEEEEEEec----CCceEEeecCCCCcc
Confidence 45555555666 567888988876655
No 57
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=68.71 E-value=11 Score=41.46 Aligned_cols=20 Identities=40% Similarity=0.468 Sum_probs=17.1
Q ss_pred cccEEEEEeCCceeEEEEEE
Q 015705 94 KGLFYALDLGGTNFRVLRVQ 113 (402)
Q Consensus 94 ~G~fLAlDlGGTNlRV~~V~ 113 (402)
....++||||.||-.|+.++
T Consensus 18 ~~~~iGIDlGTt~s~va~~~ 37 (616)
T PRK05183 18 RRLAVGIDLGTTNSLVATVR 37 (616)
T ss_pred CCeEEEEEeccccEEEEEEE
Confidence 34689999999999999874
No 58
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=67.65 E-value=10 Score=41.60 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=16.4
Q ss_pred cEEEEEeCCceeEEEEEE
Q 015705 96 LFYALDLGGTNFRVLRVQ 113 (402)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~ 113 (402)
..++||||.||..|+.++
T Consensus 3 ~viGIDlGTt~s~va~~~ 20 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVME 20 (627)
T ss_pred cEEEEEeCcccEEEEEEE
Confidence 479999999999999886
No 59
>PLN03184 chloroplast Hsp70; Provisional
Probab=66.96 E-value=19 Score=40.07 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=16.3
Q ss_pred cEEEEEeCCceeEEEEEE
Q 015705 96 LFYALDLGGTNFRVLRVQ 113 (402)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~ 113 (402)
..++||||.||..|++++
T Consensus 40 ~viGIDlGTt~s~va~~~ 57 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAME 57 (673)
T ss_pred CEEEEEeCcCcEEEEEEE
Confidence 479999999999999885
No 60
>PRK13320 pantothenate kinase; Reviewed
Probab=66.51 E-value=40 Score=32.70 Aligned_cols=31 Identities=19% Similarity=0.183 Sum_probs=21.6
Q ss_pred CCCCcceeeeeccccchhHH--HHHHHHHHHHc
Q 015705 307 LNPGEQIFEKIISGMYLGEI--VRRVLCRMAEE 337 (402)
Q Consensus 307 ~nPG~q~fEKmiSG~YLGEi--vRlill~l~~~ 337 (402)
..+|...-|-|-||.+.|-+ +..++.++.++
T Consensus 169 ~~~g~~T~~ai~sG~~~~~~~~i~~~i~~~~~~ 201 (244)
T PRK13320 169 PLIGRSTEECIRSGVVWGCVAEIEGLIEAYKSK 201 (244)
T ss_pred CcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999988865 34444444443
No 61
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=64.11 E-value=23 Score=38.42 Aligned_cols=98 Identities=14% Similarity=0.128 Sum_probs=65.7
Q ss_pred cEEEEEeCCceeEEEEEEEc-CCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHhcCCCCCCCCCceeeeee
Q 015705 96 LFYALDLGGTNFRVLRVQLG-GREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGF 174 (402)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~L~-g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~lpLGf 174 (402)
-+++||+|--.-|+++++.. |..-.........+.++......++++.+.-++..|.+.+++.+.+. .--.|+
T Consensus 4 ~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~------~~V~gI 77 (544)
T COG1069 4 YVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDP------ADVVGI 77 (544)
T ss_pred EEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCCCh------hHeeEE
Confidence 37899999999999999986 43211111111123345555556799999999999999999987642 224777
Q ss_pred eeeeeeeeccCCce-EEEecccceec
Q 015705 175 TFSFPVRQTSIASG-DLIKWTKGFSI 199 (402)
Q Consensus 175 TFSFP~~Q~~i~~g-~Li~wtKgF~~ 199 (402)
.|++-|.-.-+++. .-+.....|..
T Consensus 78 GvDaTcSlvv~d~~g~pl~v~~~~~~ 103 (544)
T COG1069 78 GVDATCSLVVIDRDGNPLAVLPEFPN 103 (544)
T ss_pred EEcceeeeEEECCCCCeeccCCCCCC
Confidence 77777776555443 66666666544
No 62
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=62.69 E-value=25 Score=33.74 Aligned_cols=48 Identities=17% Similarity=0.297 Sum_probs=30.4
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHhcC
Q 015705 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEG 159 (402)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~ 159 (402)
+++||+|.|+.|+++++ .+ .+.... +. + .+..++-.++.+.+.+++.+
T Consensus 2 ~lGIDiGtts~K~vl~d-~g---~il~~~---~~-~-------~~~~~~~~~~~l~~~~~~~~ 49 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLME-DG---KVIGYK---WL-D-------TTPVIEETARAILEALKEAG 49 (248)
T ss_pred EEEEEcChhheEEEEEc-CC---EEEEEE---Ee-c-------CCCCHHHHHHHHHHHHHHcC
Confidence 68999999999999996 43 233322 21 1 22345556677777775543
No 63
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=62.62 E-value=25 Score=37.82 Aligned_cols=87 Identities=21% Similarity=0.312 Sum_probs=61.9
Q ss_pred ccEEEEEeCCceeEEEEEEEcCCcceeEEEE-eeeeccCccccccCchHHHHHHHHHHHHHHHhcCCCCCCCCCceeeee
Q 015705 95 GLFYALDLGGTNFRVLRVQLGGREGRVVKQE-FEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (402)
Q Consensus 95 G~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~-~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~lpLG 173 (402)
.-.||||-|-|+-|..++.=+|+--.+.+.. .+.|+-|. .+..++.+++.-...++.+-+.+.+... .+.--+|
T Consensus 5 ~yIlAiDqGTTssRaivfd~~g~iva~~q~e~~Q~yP~~G-WVEhDp~eIw~~~~~~l~~a~~~~~i~~----~~iaaIG 79 (499)
T COG0554 5 KYILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQIYPQPG-WVEHDPLEIWASVRSVLKEALAKAGIKP----GEIAAIG 79 (499)
T ss_pred cEEEEEecCCcceeEEEECCCCCchhhhhhhhhhhCCCCC-ccccCHHHHHHHHHHHHHHHHHHcCCCc----cceEEEE
Confidence 4578999999999999885544321111111 13455553 4566789999999999999998876542 4566788
Q ss_pred eeeeeeeeeccCCceEEEeccc
Q 015705 174 FTFSFPVRQTSIASGDLIKWTK 195 (402)
Q Consensus 174 fTFSFP~~Q~~i~~g~Li~wtK 195 (402)
+| +| +-+.+-|.|
T Consensus 80 IT-----NQ----RETtvvWdk 92 (499)
T COG0554 80 IT-----NQ----RETTVVWDK 92 (499)
T ss_pred ee-----cc----ceeEEEEeC
Confidence 87 56 889999999
No 64
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=61.64 E-value=47 Score=36.80 Aligned_cols=41 Identities=15% Similarity=0.192 Sum_probs=25.1
Q ss_pred ceEEEEEechhHhhhcccccC----CCceEEEEeecCeeeeeecc
Q 015705 222 MRVAALVNDTIGTLAGGRYHN----KDAIAAVILGTGTNAAYVER 262 (402)
Q Consensus 222 v~vvAIvNDTVaTLla~ay~~----~~~~iGlIlGTGtNacY~E~ 262 (402)
++++.|+|+.+|.-++..... +...+=+=+|-||--+-+..
T Consensus 168 l~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~ 212 (653)
T PTZ00009 168 LNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLT 212 (653)
T ss_pred CceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEE
Confidence 557899999999999765532 22333333566665444433
No 65
>PLN02669 xylulokinase
Probab=60.90 E-value=22 Score=38.66 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=38.4
Q ss_pred CCCCCCccccEEEEEeCCceeEEEEEEEcCCcceeEEEEeeeecc--Cccc----cccCch----------HHHHHHHHH
Q 015705 87 NLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PPHL----MTGSSH----------ELFDYIAAA 150 (402)
Q Consensus 87 ~lP~G~E~G~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~I--p~~~----~~~t~~----------~LFd~IA~~ 150 (402)
++|.+. -||+||+|.|++|+++++.+|+ ++...+..|.+ |+.- ...+.+ .+++-+...
T Consensus 3 ~~~~~~---~~LGiD~GT~s~Ka~l~d~~g~---vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~ 76 (556)
T PLN02669 3 SLPEDS---LFLGFDSSTQSLKATVLDSNLR---IVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLL 76 (556)
T ss_pred CCCCCC---eEEEEecccCCeEEEEEcCCCC---EEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHH
Confidence 456533 4999999999999999976553 34433334431 2211 111222 455888888
Q ss_pred HHHHH
Q 015705 151 LAKFV 155 (402)
Q Consensus 151 I~~fl 155 (402)
+.+.+
T Consensus 77 l~~l~ 81 (556)
T PLN02669 77 LQKLA 81 (556)
T ss_pred HHHHH
Confidence 88866
No 66
>PRK13411 molecular chaperone DnaK; Provisional
Probab=54.15 E-value=46 Score=36.88 Aligned_cols=19 Identities=37% Similarity=0.464 Sum_probs=16.7
Q ss_pred ccEEEEEeCCceeEEEEEE
Q 015705 95 GLFYALDLGGTNFRVLRVQ 113 (402)
Q Consensus 95 G~fLAlDlGGTNlRV~~V~ 113 (402)
+..++||||.||-.|++++
T Consensus 2 ~~viGIDlGTt~s~va~~~ 20 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLE 20 (653)
T ss_pred CcEEEEEeCcccEEEEEEE
Confidence 3579999999999999875
No 67
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=52.63 E-value=2.2e+02 Score=28.29 Aligned_cols=48 Identities=10% Similarity=0.253 Sum_probs=30.2
Q ss_pred HHHHHHHHHHcCCCceEEEEEechhHhhhcccccCCCceEEEEeecCeee
Q 015705 208 VGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNA 257 (402)
Q Consensus 208 ~~lL~~al~r~~l~v~vvAIvNDTVaTLla~ay~~~~~~iGlIlGTGtNa 257 (402)
.+.+++++...| ++++.++|+.+|+.++......+..-++|+--|...
T Consensus 114 r~~~~~~~~~ag--~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gt 161 (333)
T TIGR00904 114 RRAVKESALSAG--AREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGT 161 (333)
T ss_pred HHHHHHHHHHcC--CCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCe
Confidence 344666666555 567899999999998765543333345665554333
No 68
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=51.43 E-value=26 Score=37.53 Aligned_cols=149 Identities=17% Similarity=0.169 Sum_probs=0.0
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHhcCCCCCCCCCceeeeee--
Q 015705 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGF-- 174 (402)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~lpLGf-- 174 (402)
.++||||.||.+|+.++ .+...++.....+..+|.-+.=...+.+|..-|.....--.++-.. +-+.-||-
T Consensus 1 viGID~Gt~~~~va~~~--~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~-----~~k~liG~~~ 73 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFK--NGKPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIY-----NLKRLIGRKF 73 (602)
T ss_dssp EEEEEE-SSEEEEEEEE--TTEEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEE-----SGGGTTTSBT
T ss_pred CEEEEeccCCEEEEEEE--eccccccccccccccccceeeEeeecccCCcchhhhcccccccccc-----cccccccccc
Q ss_pred ----------eeeeeeeeccCCceEEEecccc----------------------------------eecCCCCCCcHHHH
Q 015705 175 ----------TFSFPVRQTSIASGDLIKWTKG----------------------------------FSIEDTVGEDVVGE 210 (402)
Q Consensus 175 ----------TFSFP~~Q~~i~~g~Li~wtKg----------------------------------F~~~~v~G~Dv~~l 210 (402)
.|.|.+....-....+.-...| +.+|.--+..=.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~ 153 (602)
T PF00012_consen 74 DDPDVQKEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQA 153 (602)
T ss_dssp TSHHHHHHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHH
T ss_pred cccccchhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhc
Q ss_pred HHHHHHHcCCCceEEEEEechhHhhhcccccCCC-ceEEEEeecC
Q 015705 211 LTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKD-AIAAVILGTG 254 (402)
Q Consensus 211 L~~al~r~~l~v~vvAIvNDTVaTLla~ay~~~~-~~iGlIlGTG 254 (402)
+++|.+..|+ +++.++|+.+|+.++.+...+. ...=+|+.-|
T Consensus 154 ~~~Aa~~agl--~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~G 196 (602)
T PF00012_consen 154 LRDAAELAGL--NVLRLINEPTAAALAYGLERSDKGKTVLVVDFG 196 (602)
T ss_dssp HHHHHHHTT---EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEE
T ss_pred cccccccccc--ccceeecccccccccccccccccccceeccccc
No 69
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=48.71 E-value=75 Score=29.02 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=35.3
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCc-cccccCchHHHHHHHHHHHHHHHhc
Q 015705 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPP-HLMTGSSHELFDYIAAALAKFVATE 158 (402)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~-~~~~~t~~~LFd~IA~~I~~fl~~~ 158 (402)
|.+||+|-|+++++..+..+++...+.-.. ..|. .+..|.-.+ .+-++++|.+.+++.
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~---~~~s~gi~~G~I~d-~~~~~~~I~~ai~~a 59 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVG---EVPSRGIRKGVIVD-IEAAARAIREAVEEA 59 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEE---EecCCCccCcEEEC-HHHHHHHHHHHHHHH
Confidence 579999999999999998755432222111 1243 455664434 455566666666654
No 70
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=47.95 E-value=3e+02 Score=27.60 Aligned_cols=46 Identities=13% Similarity=0.349 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCCceEEEEEechhHhhhcccccCCCceEEEEeecCeee
Q 015705 210 ELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNA 257 (402)
Q Consensus 210 lL~~al~r~~l~v~vvAIvNDTVaTLla~ay~~~~~~iGlIlGTGtNa 257 (402)
-+.++++.. .++++.++|+.+|..++.........-++|+--|...
T Consensus 116 ~l~~a~~~a--g~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gt 161 (335)
T PRK13929 116 AISDAVKNC--GAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGT 161 (335)
T ss_pred HHHHHHHHc--CCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCe
Confidence 344455544 4677899999999999865443334445665555333
No 71
>PRK03657 hypothetical protein; Validated
Probab=47.55 E-value=68 Score=29.74 Aligned_cols=68 Identities=22% Similarity=0.425 Sum_probs=44.8
Q ss_pred HcCCCHHHHHH---HHHHHHHHHHHhhccCCCCcceeeeccccCCCCC----Cccc-cEEEEEeCCceeEEEEEEEcC
Q 015705 47 KCGTPIGKLRQ---VADAMTVEMHAGLASEGGSKLKMLISYVDNLPTG----DEKG-LFYALDLGGTNFRVLRVQLGG 116 (402)
Q Consensus 47 ~~~~~~~~L~~---i~~~f~~em~~GL~~~~~s~l~MLPS~v~~lP~G----~E~G-~fLAlDlGGTNlRV~~V~L~g 116 (402)
.+.++.+.+++ ++..-..+|-+|....-++++..--|-+.. |+| +..| .|++|...+. ..+-...+.|
T Consensus 70 lLgV~~~~i~~~gavS~e~A~~MA~g~~~~~~aDiala~TG~AG-P~g~~~~kpvGtV~iai~~~~~-~~~~~~~~~g 145 (170)
T PRK03657 70 ILSVSQQSLERYSAVSEAVVAEMATGAIERADADISIAISGYGG-PEGGEDGTPAGTVWFAWNIKGQ-TYTARMHFAG 145 (170)
T ss_pred hcCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCEEEEeccccC-CCCCCCCCCCeEEEEEEEcCCc-EEEEEEecCC
Confidence 45678888877 788888888888765445677777777754 664 3556 5889977653 3333333433
No 72
>PRK13322 pantothenate kinase; Reviewed
Probab=47.22 E-value=61 Score=31.49 Aligned_cols=44 Identities=14% Similarity=0.155 Sum_probs=26.6
Q ss_pred eecCCCCCCcHHHHHHHHHHHc-CCCceEEEEEechhHhhhcccccC
Q 015705 197 FSIEDTVGEDVVGELTKAMERI-GLDMRVAALVNDTIGTLAGGRYHN 242 (402)
Q Consensus 197 F~~~~v~G~Dv~~lL~~al~r~-~l~v~vvAIvNDTVaTLla~ay~~ 242 (402)
.-++.|++..+.+.|++++++. ++++.. +-.+.-..=+..+|.+
T Consensus 51 v~vsSV~p~~~~~~l~~~l~~~~~~~~~~--v~~~~~~~gv~~~y~~ 95 (246)
T PRK13322 51 CRIVSVLSEEETARLVAILEKRLGIPVVF--AKVAAELAGVRNGYED 95 (246)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHhCCCeEE--EecCCcCCCceecCCC
Confidence 4566788889999999999775 444322 3233332334455544
No 73
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=47.06 E-value=37 Score=36.97 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=15.4
Q ss_pred EEEEEeCCceeEEEEEE
Q 015705 97 FYALDLGGTNFRVLRVQ 113 (402)
Q Consensus 97 fLAlDlGGTNlRV~~V~ 113 (402)
.++||||.||.+|+.++
T Consensus 2 viGIDlGtt~s~va~~~ 18 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVME 18 (595)
T ss_pred EEEEEeCcccEEEEEEE
Confidence 58999999999999885
No 74
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=46.71 E-value=1.1e+02 Score=31.55 Aligned_cols=130 Identities=17% Similarity=0.258 Sum_probs=81.4
Q ss_pred cEEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHhcCCCCCC-----CC----
Q 015705 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHV-----SP---- 166 (402)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~~~~~~-----~~---- 166 (402)
.-+.||+|-+..+|+-.+-.|+ +..-.+...-++|+..+....--=.+-+++.|.+.+.+++..... +.
T Consensus 11 ~~vGIdI~~~sVKvvqLs~~g~--~~kLe~y~~~~lp~~iv~dg~ivd~~av~~~Lk~ala~~gi~~k~aa~AVP~s~ai 88 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSRSGN--RYKLEKYASEPLPENIVADGKIVDYDAVASALKRALAKLGIKSKNAATAVPGSAAI 88 (354)
T ss_pred ceeeEeeccceEEEEEEcccCC--ceeeeeeeecccCccccccCCcccHHHHHHHHHHHHHhcCcchhhhhhhcCcccee
Confidence 3688999999999877653333 222223345678998876544444578888899988887754321 00
Q ss_pred Cc-----------------eeeeeeeeeeeeeeccCCceEEEecccceecCC----CCCCcHHHHHHHHHHHcCCCceEE
Q 015705 167 GR-----------------QRELGFTFSFPVRQTSIASGDLIKWTKGFSIED----TVGEDVVGELTKAMERIGLDMRVA 225 (402)
Q Consensus 167 ~~-----------------~lpLGfTFSFP~~Q~~i~~g~Li~wtKgF~~~~----v~G~Dv~~lL~~al~r~~l~v~vv 225 (402)
.+ ....+.-++||.+..++|=-.|-.-.-+=.-.+ +--+++++...+|++.-|+..+|+
T Consensus 89 tk~i~vp~~lde~eL~~~V~~ea~~y~PyP~EEv~lDy~vlg~~~~~~e~v~Vll~AtrkE~v~~ri~a~~~AGl~~~vl 168 (354)
T COG4972 89 TKTIPVPDELDEKELEDQVESEASRYIPYPLEEVNLDYQVLGPSANEPEKVQVLLVATRKEVVESRIDAFELAGLEPKVL 168 (354)
T ss_pred eEEeccCCcccHHHHHHHHHHHHhhcCCCchhhcccceEEeccccCCCccEEEEEEEeehhhhHHHHHHHHHcCCCceEE
Confidence 00 124466789999998876554433322210000 124799999999999999876554
Q ss_pred EE
Q 015705 226 AL 227 (402)
Q Consensus 226 AI 227 (402)
-|
T Consensus 169 DV 170 (354)
T COG4972 169 DV 170 (354)
T ss_pred eh
Confidence 43
No 75
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=45.53 E-value=43 Score=34.36 Aligned_cols=56 Identities=13% Similarity=0.268 Sum_probs=36.2
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccC-ccccccCchHHHHHHH---HHHHHHHHhcCC
Q 015705 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIP-PHLMTGSSHELFDYIA---AALAKFVATEGE 160 (402)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip-~~~~~~t~~~LFd~IA---~~I~~fl~~~~~ 160 (402)
.|+|+.|||+.|+++++-.+. +.... ..-+ +++ +..+..-|.++ +.|.+++++++.
T Consensus 2 il~in~Gsts~k~alf~~~~~---~~~~~---~~~~~~~~--~~~~~~~~q~~~r~~~i~~~l~~~~~ 61 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERP---LFEET---LRHSVEEL--GRFKNVIDQFEFRKQVILQFLEEHGI 61 (351)
T ss_pred EEEEecCchhheEEEEeCCCc---eeeee---ecCCHHHh--cccccHHHHHHHHHHHHHHHHHHcCC
Confidence 699999999999999865432 11111 1111 222 34456777787 888889887653
No 76
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=42.00 E-value=55 Score=35.90 Aligned_cols=16 Identities=44% Similarity=0.513 Sum_probs=14.7
Q ss_pred EEEEeCCceeEEEEEE
Q 015705 98 YALDLGGTNFRVLRVQ 113 (402)
Q Consensus 98 LAlDlGGTNlRV~~V~ 113 (402)
++||||.||-.|+.++
T Consensus 2 iGIDlGTtns~va~~~ 17 (599)
T TIGR01991 2 VGIDLGTTNSLVASVR 17 (599)
T ss_pred EEEEEccccEEEEEEE
Confidence 7899999999999885
No 77
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=40.00 E-value=1.1e+02 Score=30.61 Aligned_cols=173 Identities=16% Similarity=0.203 Sum_probs=92.1
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHhcCCCCCCCCCceee-eeee
Q 015705 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRE-LGFT 175 (402)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~lp-LGfT 175 (402)
-+|||.|||=-+|..-.... .+ ..|.+-+ +..-++..+|+++-|.+..+......+ -+. =|=.
T Consensus 20 ~vaiDiGGtLaKvv~sp~~s-----nr---l~F~t~e---T~kId~~ve~l~~li~~h~k~C~~~~~-----liatGGga 83 (342)
T COG5146 20 KVAIDIGGTLAKVVQSPSQS-----NR---LTFKTEE---TKKIDQVVEWLNNLIQQHEKLCLTKIT-----LIATGGGA 83 (342)
T ss_pred EEEEecCceeeeeeeCcccc-----cc---eeeehHh---hhhHHHHHHHHHHHHHHHHhhhhheee-----EEecCCcc
Confidence 58999999988886521111 11 1233222 234678889998877766443321100 000 0001
Q ss_pred eeeeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHc--CCCceEEEEEechhHh----hhcccccCCCceEEE
Q 015705 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERI--GLDMRVAALVNDTIGT----LAGGRYHNKDAIAAV 249 (402)
Q Consensus 176 FSFP~~Q~~i~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~--~l~v~vvAIvNDTVaT----Lla~ay~~~~~~iGl 249 (402)
|-| --++.|.|+++ +.-.+-.+.|...|.-. .+|-+ |-+.||..+- ++...|.+-...|=+
T Consensus 84 ~kf-----------yd~m~~~~~ik-v~r~~eme~li~gl~~fv~~IP~e-vFv~~d~~~e~~~~~~~~~~h~lypyilv 150 (342)
T COG5146 84 YKF-----------YDRMSKQLDIK-VIRENEMEILINGLNYFVINIPAE-VFVEFDAASEGLGILLKEQGHDLYPYILV 150 (342)
T ss_pred hhh-----------HHHHhhhccce-eeecchHHHHHhcccceeeeccHH-HeeeeccccchhhhhhhhccccccceeeE
Confidence 111 12456667666 44445445444433322 22322 3567776543 445566665677888
Q ss_pred EeecCeeeeeecccCCCCccCCCCCCCCcEEEEeccCCcCCCCCCCCccchhhcc
Q 015705 250 ILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDT 304 (402)
Q Consensus 250 IlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~lD~ 304 (402)
=+|+|+-.-|+..-++.....+..... -|=||-.- =--+.|.||..+|-
T Consensus 151 NiGsGvSilkvtgpsqf~RvGGsslGG-----GtlwGLls-Llt~a~~ydqmld~ 199 (342)
T COG5146 151 NIGSGVSILKVTGPSQFERVGGSSLGG-----GTLWGLLS-LLTQATDYDQMLDM 199 (342)
T ss_pred eccCCeEEEEecCcchhccccccccCc-----chHHHHHH-HHcccccHHHHHHH
Confidence 899999888876655444444322111 23466541 01367899998884
No 78
>PRK11677 hypothetical protein; Provisional
Probab=38.06 E-value=56 Score=29.27 Aligned_cols=20 Identities=10% Similarity=0.023 Sum_probs=13.2
Q ss_pred eeehhhhhhhhhhhhhhhhc
Q 015705 9 TVVCAAAVCAAAALVVRRRM 28 (402)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~ 28 (402)
+++++.+++++|+++.|.-.
T Consensus 6 a~i~livG~iiG~~~~R~~~ 25 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRFGN 25 (134)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 34566777778877777543
No 79
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=37.64 E-value=2.8e+02 Score=26.59 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=20.2
Q ss_pred HHHHHHHHHcCCCceEEEEEechhHhhhc
Q 015705 209 GELTKAMERIGLDMRVAALVNDTIGTLAG 237 (402)
Q Consensus 209 ~lL~~al~r~~l~v~vvAIvNDTVaTLla 237 (402)
+.+.++++.-|+ +++.++|+.+|..++
T Consensus 78 ~a~~~a~~~aGl--~~~~li~ep~Aaa~~ 104 (239)
T TIGR02529 78 KVIVNVIESAGI--EVLHVLDEPTAAAAV 104 (239)
T ss_pred HHHHHHHHHcCC--ceEEEeehHHHHHHH
Confidence 455677777665 557999999998875
No 80
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=35.82 E-value=1.3e+02 Score=30.11 Aligned_cols=60 Identities=15% Similarity=0.356 Sum_probs=34.6
Q ss_pred EEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHhcCC
Q 015705 99 ALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGE 160 (402)
Q Consensus 99 AlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~~ 160 (402)
.||+|-.++|++.++-.+++.. +. ..-..++|........-.=.+.+++.|.+.+++++.
T Consensus 1 GiDiG~~siK~v~l~~~~~~~~-l~-~~~~~~~p~~~i~~g~i~d~~~l~~~L~~~~~~~~~ 60 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGNRFQ-LE-AFASIPLPPGAISDGEIVDPEALAEALKELLKENKI 60 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--E-EE-EEEEEE--TTSEETTEES-HHHHHHHHHHHHHHHT-
T ss_pred CeecCCCeEEEEEEEEcCCccE-EE-EEEEEECCCCCccCCCcCCHHHHHHHHHHHHHHcCC
Confidence 5899999999988877444322 22 334677888764322222245678888888877664
No 81
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.00 E-value=77 Score=27.83 Aligned_cols=34 Identities=12% Similarity=0.058 Sum_probs=18.3
Q ss_pred eehhhhhhhhhhhhhhhhccccchHHHHHHHHHH
Q 015705 10 VVCAAAVCAAAALVVRRRMKSTGRWARAVAILKE 43 (402)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 43 (402)
.+++.+++++|+++.|...++.+..+++++-|++
T Consensus 3 ~i~lvvG~iiG~~~~r~~~~~~~~q~~l~~eL~~ 36 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTSSNQQKQAKLEQELEQ 36 (128)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH
Confidence 3456667777777766655443333344444433
No 82
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=34.85 E-value=1.5e+02 Score=29.44 Aligned_cols=62 Identities=26% Similarity=0.264 Sum_probs=41.1
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCcccc-ccC-chHHHHHHHHHHHHHHHhc
Q 015705 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLM-TGS-SHELFDYIAAALAKFVATE 158 (402)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~-~~t-~~~LFd~IA~~I~~fl~~~ 158 (402)
|=+||+|-.++|..++++.+..............+.+.+- ++. .++=.+-+.+++.+|.+..
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~~~ 65 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFAELL 65 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999986432233333344566766652 222 4566677778888887654
No 83
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=33.86 E-value=89 Score=23.48 Aligned_cols=34 Identities=6% Similarity=0.123 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 015705 35 ARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHA 68 (402)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~ 68 (402)
+.++++++.+.+.|.++.+++++=+..|..++.+
T Consensus 30 ~t~~ei~~~l~~~y~~~~~~~~~dv~~fl~~L~~ 63 (68)
T PF05402_consen 30 RTVEEIVDALAEEYDVDPEEAEEDVEEFLEQLRE 63 (68)
T ss_dssp S-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999998888999998875
No 84
>PRK13411 molecular chaperone DnaK; Provisional
Probab=32.86 E-value=1.1e+02 Score=33.85 Aligned_cols=24 Identities=42% Similarity=0.710 Sum_probs=20.7
Q ss_pred ccccEEEEEeCCceeEEEEEEEcC
Q 015705 93 EKGLFYALDLGGTNFRVLRVQLGG 116 (402)
Q Consensus 93 E~G~fLAlDlGGTNlRV~~V~L~g 116 (402)
..+.+|++|+||.+|-|.++++.+
T Consensus 184 ~~~~vlV~DlGgGT~dvsi~~~~~ 207 (653)
T PRK13411 184 QEQLILVFDLGGGTFDVSILQLGD 207 (653)
T ss_pred CCCEEEEEEcCCCeEEEEEEEEeC
Confidence 345799999999999999999954
No 85
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=32.29 E-value=27 Score=33.88 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=20.4
Q ss_pred hHhhhcccccCCCceEE--------EEeecCeee
Q 015705 232 IGTLAGGRYHNKDAIAA--------VILGTGTNA 257 (402)
Q Consensus 232 VaTLla~ay~~~~~~iG--------lIlGTGtNa 257 (402)
+|.|.|-+-.||++.|| .|+|||-|+
T Consensus 73 iA~LsA~RSkDpntqVGaCiv~~~n~iVg~GYNg 106 (230)
T KOG3127|consen 73 IAFLSAKRSKDPNTQVGACIVDRENRIVGTGYNG 106 (230)
T ss_pred HHHHHHHhccCcccceeeEEEcCCCEEEEeccCC
Confidence 78888888899999999 455666554
No 86
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=31.54 E-value=35 Score=30.37 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=35.8
Q ss_pred hhhhhhhhhhcccc---chHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcc
Q 015705 18 AAAALVVRRRMKST---GRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLAS 72 (402)
Q Consensus 18 ~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~GL~~ 72 (402)
++..++.+++.-.- .-...+++..++.. +..+++++.++.+.+|...|++-|+.
T Consensus 34 ~~s~~~~~~~~P~iV~FDmK~Tld~F~~Q~~-~~~lte~q~e~lt~rF~~aL~~~L~~ 90 (128)
T PRK13717 34 AVSYGIVRLNAPVTAAFNMKQTVDAFFDSAS-QKQLSEAQSKALSARFNTALEASLQA 90 (128)
T ss_pred HHHHHHhhcCCCeEEEEehHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666662221 22334555555553 44578999999999999999999963
No 87
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=29.80 E-value=44 Score=33.75 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=18.4
Q ss_pred cccEEEEEeCCceeEEEEEEEc
Q 015705 94 KGLFYALDLGGTNFRVLRVQLG 115 (402)
Q Consensus 94 ~G~fLAlDlGGTNlRV~~V~L~ 115 (402)
...|+++|-|.||||+-+++=+
T Consensus 4 ~~~~i~iDWGTT~~R~wL~~~d 25 (306)
T COG3734 4 EPAYIAIDWGTTNLRAWLVRGD 25 (306)
T ss_pred CceEEEEecCCccEEEEEEcCC
Confidence 3579999999999999888543
No 88
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=29.62 E-value=1.3e+02 Score=27.10 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=42.9
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHhcCCC
Q 015705 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEG 161 (402)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~~~~~ 161 (402)
..+++|=|+..++|++.+.+....++.....++.+++.- +.+++=+|- ..++.+++++..+
T Consensus 3 vCGVELkgneaii~ll~~~~~~~~~pdcr~~k~~l~~~~---~~~~vr~Fq-~~f~kl~~dy~Vd 63 (138)
T PF11215_consen 3 VCGVELKGNEAIICLLSLDDGLFQLPDCRVRKFSLSDDN---STEEVRKFQ-FTFAKLMEDYKVD 63 (138)
T ss_pred EEEEEEecCeEEEEEEecCCCceECCccceeEEEcCCCc---cHHHHHHHH-HHHHHHHHHcCCC
Confidence 468899999999999998655445555566678888754 455555554 3477788877653
No 89
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=29.32 E-value=1e+02 Score=32.50 Aligned_cols=18 Identities=33% Similarity=0.469 Sum_probs=16.1
Q ss_pred EEEEeCCceeEEEEEEEc
Q 015705 98 YALDLGGTNFRVLRVQLG 115 (402)
Q Consensus 98 LAlDlGGTNlRV~~V~L~ 115 (402)
+|+|+|-|+++..+|+|.
T Consensus 4 iAvDiGTTti~~~L~dl~ 21 (412)
T PF14574_consen 4 IAVDIGTTTIAAYLVDLE 21 (412)
T ss_dssp EEEEE-SSEEEEEEEETT
T ss_pred EEEEcchhheeeEEEECC
Confidence 799999999999999995
No 90
>PRK10854 exopolyphosphatase; Provisional
Probab=29.26 E-value=2.8e+02 Score=29.87 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=43.5
Q ss_pred cEEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCcccc-ccC-chHHHHHHHHHHHHHHHh
Q 015705 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLM-TGS-SHELFDYIAAALAKFVAT 157 (402)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~-~~t-~~~LFd~IA~~I~~fl~~ 157 (402)
.|=|||+|-.++|..+++..++.-.++....+...+.+.+- ++. .++=.+-..+++..|...
T Consensus 12 ~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~~ 75 (513)
T PRK10854 12 EFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAER 75 (513)
T ss_pred EEEEEEeccchheEEEEEecCCcEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 47799999999999999986543344444445666766553 222 457788888888888654
No 91
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=29.07 E-value=40 Score=34.32 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=17.9
Q ss_pred cccEEEEEeCCceeEEEEEE
Q 015705 94 KGLFYALDLGGTNFRVLRVQ 113 (402)
Q Consensus 94 ~G~fLAlDlGGTNlRV~~V~ 113 (402)
.+..|.+|+|||+..|+.|+
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CCCEEEEEcCccceeeEEec
Confidence 56799999999999999984
No 92
>PRK13326 pantothenate kinase; Reviewed
Probab=28.18 E-value=4.1e+02 Score=26.16 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=29.3
Q ss_pred cEEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHH
Q 015705 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAA 149 (402)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~ 149 (402)
-.|+||.|=||.++++.+ ++ .... .|+++-+. ..+.+++..++..
T Consensus 7 ~~L~IDiGNT~ik~glf~--~~--~l~~----~~r~~t~~-~~t~de~~~~l~~ 51 (262)
T PRK13326 7 SQLIIDIGNTSISFALYK--DN--KMQI----FCKLKTKL-DLSFDELYSFLKE 51 (262)
T ss_pred EEEEEEeCCCeEEEEEEE--CC--EEEE----EEEeccCC-CCCHHHHHHHHhc
Confidence 379999999999999986 22 2222 35666333 3456777766644
No 93
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=27.81 E-value=58 Score=22.87 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=19.4
Q ss_pred CCCCCcceeeeeccccchhHHHHHHHHHHHH
Q 015705 306 SLNPGEQIFEKIISGMYLGEIVRRVLCRMAE 336 (402)
Q Consensus 306 S~nPG~q~fEKmiSG~YLGEivRlill~l~~ 336 (402)
++||.+|+-|-=-+..|+|-++=.++--+..
T Consensus 2 ~~Npn~q~VELNRTSLY~GLllifvl~vLFs 32 (37)
T PF02419_consen 2 RPNPNKQPVELNRTSLYWGLLLIFVLAVLFS 32 (37)
T ss_dssp ---TT---BE--CCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccchhHHhHHHHHHHHHHHHHHhh
Confidence 5799999999999999999998877765544
No 94
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=27.15 E-value=1.8e+02 Score=31.64 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.2
Q ss_pred cccEEEEEeCCceeEEEEEEEcC
Q 015705 94 KGLFYALDLGGTNFRVLRVQLGG 116 (402)
Q Consensus 94 ~G~fLAlDlGGTNlRV~~V~L~g 116 (402)
...+|.+|+||.++-|.++++.+
T Consensus 182 ~~~vlV~D~Gggt~dvsv~~~~~ 204 (595)
T TIGR02350 182 DEKILVFDLGGGTFDVSILEIGD 204 (595)
T ss_pred CcEEEEEECCCCeEEEEEEEecC
Confidence 45799999999999999999954
No 95
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=27.14 E-value=1.5e+02 Score=24.26 Aligned_cols=36 Identities=6% Similarity=0.162 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccC
Q 015705 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (402)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~GL~~~ 73 (402)
.++++.+.+...++..+...+.+.|.+.|.+.|...
T Consensus 4 ~eli~~ia~~~~~s~~~~~~~v~~~~~~i~~~L~~g 39 (90)
T PRK10753 4 TQLIDVIADKAELSKTQAKAALESTLAAITESLKEG 39 (90)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 356677777788999999999999999999999764
No 96
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=27.00 E-value=2.1e+02 Score=30.73 Aligned_cols=63 Identities=22% Similarity=0.256 Sum_probs=43.0
Q ss_pred cEEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCcccc-ccC-chHHHHHHHHHHHHHHHhc
Q 015705 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLM-TGS-SHELFDYIAAALAKFVATE 158 (402)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~-~~t-~~~LFd~IA~~I~~fl~~~ 158 (402)
.|=+||+|-.++|..+++..+..-..+....+...+.+.+. +|. .++=.+-..+++..|.+..
T Consensus 7 ~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~F~~~~ 71 (496)
T PRK11031 7 LYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGLDSDNALSNEAMERGWQCLRLFAERL 71 (496)
T ss_pred EEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCcCcCCCcCHHHHHHHHHHHHHHHHHH
Confidence 46699999999999999986533233433445666765542 232 4577788888898887643
No 97
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=26.83 E-value=1.3e+02 Score=33.08 Aligned_cols=24 Identities=33% Similarity=0.634 Sum_probs=21.1
Q ss_pred ccccEEEEEeCCceeEEEEEEEcC
Q 015705 93 EKGLFYALDLGGTNFRVLRVQLGG 116 (402)
Q Consensus 93 E~G~fLAlDlGGTNlRV~~V~L~g 116 (402)
+.+.+|.+||||.+|-|.++++.+
T Consensus 191 ~~~~vlV~DlGGGT~DvSi~~~~~ 214 (595)
T PRK01433 191 QKGCYLVYDLGGGTFDVSILNIQE 214 (595)
T ss_pred CCCEEEEEECCCCcEEEEEEEEeC
Confidence 456899999999999999999854
No 98
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=26.21 E-value=2e+02 Score=31.70 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=16.4
Q ss_pred ccEEEEEeCCceeEEEEEE
Q 015705 95 GLFYALDLGGTNFRVLRVQ 113 (402)
Q Consensus 95 G~fLAlDlGGTNlRV~~V~ 113 (402)
...++||||.||-.|+...
T Consensus 19 ~~viGIDlGTT~S~va~~~ 37 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIAT 37 (595)
T ss_pred ceEEEEEcCcccEEEEEEe
Confidence 4589999999999999874
No 99
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=26.04 E-value=1.9e+02 Score=32.37 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=20.2
Q ss_pred cccEEEEEeCCceeEEEEEEEcC
Q 015705 94 KGLFYALDLGGTNFRVLRVQLGG 116 (402)
Q Consensus 94 ~G~fLAlDlGGTNlRV~~V~L~g 116 (402)
.+.+|++||||.+|=|.++++.+
T Consensus 211 ~~~vlV~DlGGGT~DvSil~~~~ 233 (657)
T PTZ00186 211 DSLIAVYDLGGGTFDISVLEIAG 233 (657)
T ss_pred CCEEEEEECCCCeEEEEEEEEeC
Confidence 35799999999999999999954
No 100
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=25.79 E-value=1.6e+02 Score=24.18 Aligned_cols=36 Identities=8% Similarity=0.177 Sum_probs=31.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccC
Q 015705 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (402)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~GL~~~ 73 (402)
.++++.+.+...++..+...+.+.|.++|.+.|...
T Consensus 5 ~eli~~ia~~~~~s~~~v~~vv~~~~~~i~~~L~~g 40 (96)
T TIGR00987 5 AEMSEYLFDELGLSKREAKELVELFFEEIRRALENG 40 (96)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 456777777788999999999999999999999763
No 101
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=25.43 E-value=1.7e+02 Score=32.08 Aligned_cols=145 Identities=17% Similarity=0.137 Sum_probs=0.0
Q ss_pred ccEEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCcccc-ccCchHHHHHHHHHHHHHHHhcCCCCCCCCCceeeee
Q 015705 95 GLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLM-TGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (402)
Q Consensus 95 G~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~-~~t~~~LFd~IA~~I~~fl~~~~~~~~~~~~~~lpLG 173 (402)
..+++||||-||-=|+.++-++ ...+..-......+|.-+- ...++.++.+-|..- .......... ..+..+|
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~-~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q--~~~~p~~t~~---~~kr~~G 78 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGG-LPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQ--AVDNPENTIF---SIKRKIG 78 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCC-CceEecCCCCCcccceEEEECCCCCEEecHHHHHH--hhhCCcceEE---EEehhcC
Q ss_pred eeeeeeeeeccCCceEEEecccceecCCCCCCcHHHHHH------------------------------HHHHHcCCCce
Q 015705 174 FTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELT------------------------------KAMERIGLDMR 223 (402)
Q Consensus 174 fTFSFP~~Q~~i~~g~Li~wtKgF~~~~v~G~Dv~~lL~------------------------------~al~r~~l~v~ 223 (402)
.. .........-++|-|...++...-+..+-+ +|....|+++.
T Consensus 79 ~~-------~~~~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~~iaGl~vl 151 (579)
T COG0443 79 RG-------SNGLKISVEVDGKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVL 151 (579)
T ss_pred CC-------CCCCcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCCeE
Q ss_pred EEEEEechhHhhhcccccCCCceEEEEeecC
Q 015705 224 VAALVNDTIGTLAGGRYHNKDAIAAVILGTG 254 (402)
Q Consensus 224 vvAIvNDTVaTLla~ay~~~~~~iGlIlGTG 254 (402)
.++|+.+|..++-.........=+|+-=|
T Consensus 152 --rlinEPtAAAlayg~~~~~~~~vlV~DlG 180 (579)
T COG0443 152 --RLINEPTAAALAYGLDKGKEKTVLVYDLG 180 (579)
T ss_pred --EEecchHHHHHHhHhccCCCcEEEEEEcC
No 102
>PRK13410 molecular chaperone DnaK; Provisional
Probab=24.50 E-value=2.1e+02 Score=31.98 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.2
Q ss_pred cccEEEEEeCCceeEEEEEEEcC
Q 015705 94 KGLFYALDLGGTNFRVLRVQLGG 116 (402)
Q Consensus 94 ~G~fLAlDlGGTNlRV~~V~L~g 116 (402)
.+.+|.+|+||.+|-|.++++.+
T Consensus 186 ~~~vlV~DlGgGT~Dvsv~~~~~ 208 (668)
T PRK13410 186 SQTVLVFDLGGGTFDVSLLEVGN 208 (668)
T ss_pred CCEEEEEECCCCeEEEEEEEEcC
Confidence 45799999999999999999954
No 103
>PRK00285 ihfA integration host factor subunit alpha; Reviewed
Probab=24.20 E-value=1.6e+02 Score=24.22 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccC
Q 015705 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (402)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~GL~~~ 73 (402)
.++++.+.+...++..+...+.+.|.++|.+.|...
T Consensus 6 ~el~~~ia~~~~~s~~~v~~vl~~~~~~i~~~L~~g 41 (99)
T PRK00285 6 ADLAEALFEKVGLSKREAKELVELFFEEIRDALENG 41 (99)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 567778888888999999999999999999999763
No 104
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=24.09 E-value=2e+02 Score=31.67 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.2
Q ss_pred cccEEEEEeCCceeEEEEEEEcC
Q 015705 94 KGLFYALDLGGTNFRVLRVQLGG 116 (402)
Q Consensus 94 ~G~fLAlDlGGTNlRV~~V~L~g 116 (402)
...+|.+|+||.++-|.++++.+
T Consensus 184 ~~~vlV~D~GggT~dvsv~~~~~ 206 (627)
T PRK00290 184 DEKILVYDLGGGTFDVSILEIGD 206 (627)
T ss_pred CCEEEEEECCCCeEEEEEEEEeC
Confidence 35699999999999999999954
No 105
>CHL00094 dnaK heat shock protein 70
Probab=23.78 E-value=2.2e+02 Score=31.31 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=19.6
Q ss_pred ccEEEEEeCCceeEEEEEEEcC
Q 015705 95 GLFYALDLGGTNFRVLRVQLGG 116 (402)
Q Consensus 95 G~fLAlDlGGTNlRV~~V~L~g 116 (402)
+.+|.+|+||.++-|.++++.+
T Consensus 187 ~~vlV~DlGgGT~DvSv~~~~~ 208 (621)
T CHL00094 187 ETILVFDLGGGTFDVSILEVGD 208 (621)
T ss_pred CEEEEEEcCCCeEEEEEEEEcC
Confidence 4689999999999999999854
No 106
>COG1546 CinA Uncharacterized protein (competence- and mitomycin-induced) [General function prediction only]
Probab=23.75 E-value=3.3e+02 Score=25.23 Aligned_cols=69 Identities=26% Similarity=0.535 Sum_probs=47.4
Q ss_pred HcCCCHHHHHH---HHHHHHHHHHHhhccCCCCcceeeeccccCCCCCC----ccc-cEEEEEeCCceeEEEEEEEcCC
Q 015705 47 KCGTPIGKLRQ---VADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGD----EKG-LFYALDLGGTNFRVLRVQLGGR 117 (402)
Q Consensus 47 ~~~~~~~~L~~---i~~~f~~em~~GL~~~~~s~l~MLPS~v~~lP~G~----E~G-~fLAlDlGGTNlRV~~V~L~g~ 117 (402)
.+.++.+.|.+ |++.-.+||-+|...+..+++..--|-|.. |+|. +.| .|+++..|| ..-+-.++++|+
T Consensus 64 lLgV~~~tL~~~GaVSe~~a~eMA~Ga~~~~~ad~aiaiTGiAG-P~Gg~~~kpvGtV~ig~~~~~-~~~~~~~~~~g~ 140 (162)
T COG1546 64 LLGVSPETLEEHGAVSEEVAREMARGAKERAGADIAIAITGIAG-PDGGSEGKPVGTVYIGLAIGG-EAITIRVNFGGD 140 (162)
T ss_pred HhCCCHHHHHHcCCcCHHHHHHHHHHHHHhcCCCEEEEEEEeeC-CCCCCCCCCceEEEEEEEcCC-ceEEEEEEcCCC
Confidence 34577776654 688888999999876555777777788855 8843 566 488899844 444445566654
No 107
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=23.71 E-value=94 Score=22.01 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=26.7
Q ss_pred CCCCCcceeeeeccccchhHHHHHHHHHHHHc
Q 015705 306 SLNPGEQIFEKIISGMYLGEIVRRVLCRMAEE 337 (402)
Q Consensus 306 S~nPG~q~fEKmiSG~YLGEivRlill~l~~~ 337 (402)
.+||.+|+-|-=-...|+|-++=.++.-+...
T Consensus 4 ~~NpN~q~VELNRTSLy~GlLlifvl~vLFss 35 (39)
T PRK00753 4 NPNPNKQPVELNRTSLYLGLLLVFVLGILFSS 35 (39)
T ss_pred CCCCCCCCceechhhHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999987777655543
No 108
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=23.45 E-value=76 Score=31.50 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=14.5
Q ss_pred cEEEEEeCCceeEEEEEE
Q 015705 96 LFYALDLGGTNFRVLRVQ 113 (402)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~ 113 (402)
..|.+|+|||+.-|++|.
T Consensus 78 ~~i~vDmGGTTtDi~~i~ 95 (290)
T PF01968_consen 78 NAIVVDMGGTTTDIALIK 95 (290)
T ss_dssp SEEEEEE-SS-EEEEEEE
T ss_pred CEEEEeCCCCEEEEEEEE
Confidence 589999999999999984
No 109
>PF13941 MutL: MutL protein
Probab=23.40 E-value=95 Score=33.26 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=22.4
Q ss_pred cEEEEEeCCceeEEEEEEEcCCcceeEEE
Q 015705 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQ 124 (402)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~L~g~~~~~~~~ 124 (402)
.||++|+|.|.-|+.+|++.......+-+
T Consensus 1 ~~L~~DiGST~Tk~~l~d~~~~~~~~ig~ 29 (457)
T PF13941_consen 1 DVLVVDIGSTYTKVTLFDLVDGEPRLIGQ 29 (457)
T ss_pred CEEEEEeCCcceEEeEEeccCCccEEEEE
Confidence 48999999999999999965544444443
No 110
>PF00216 Bac_DNA_binding: Bacterial DNA-binding protein; InterPro: IPR000119 Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coli is a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) []. The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as a dimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. ; GO: 0003677 DNA binding; PDB: 3C4I_B 2O97_A 1MUL_A 1P78_A 1P51_C 1P71_B 2HT0_A 1OWG_A 2IIF_A 1OUZ_A ....
Probab=22.71 E-value=1.9e+02 Score=22.82 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccC
Q 015705 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (402)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~GL~~~ 73 (402)
.++++.+.+...++..+...+.+.|.+.|.+.|...
T Consensus 4 ~eli~~ia~~~~~s~~~v~~vl~~~~~~i~~~L~~g 39 (90)
T PF00216_consen 4 KELIKRIAEKTGLSKKDVEAVLDALFDVIKEALKEG 39 (90)
T ss_dssp HHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 466777777778999999999999999999999763
No 111
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=22.47 E-value=1.9e+02 Score=22.94 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccC
Q 015705 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (402)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~GL~~~ 73 (402)
.++++++.+...++..+...+.+.|.++|.+.|...
T Consensus 4 ~eli~~ia~~~~~~~~~v~~vl~~l~~~i~~~L~~g 39 (90)
T smart00411 4 SELIDAIAEKAGLSKKDAKAAVDAFLEIITEALKKG 39 (90)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 467777888888999999999999999999999763
No 112
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=22.08 E-value=3.4e+02 Score=28.30 Aligned_cols=59 Identities=8% Similarity=0.111 Sum_probs=33.9
Q ss_pred cEEEEEeCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchHHHHHHHHHHHHHHHh
Q 015705 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVAT 157 (402)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~t~~~LFd~IA~~I~~fl~~ 157 (402)
.+.+||+|-|..++++.++.+++...+.-.. ..+ ...++.|.-.+ .+-.+++|.+-+++
T Consensus 9 ~i~~lDIGsskv~~vv~~~~~~~~~~i~g~~-~~~-s~gi~~G~I~d-~~~~~~aI~~av~~ 67 (420)
T PRK09472 9 LVVGLEIGTAKVAALVGEVLPDGMVNIIGVG-SCP-SRGMDKGGVND-LESVVKCVQRAIDQ 67 (420)
T ss_pred EEEEEEcccceEEEEEEEEcCCCCEEEEEEE-Ecc-CCCccCCEEEc-HHHHHHHHHHHHHH
Confidence 5889999999999998887654432222111 112 33455554333 34555555555554
No 113
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=21.99 E-value=2e+02 Score=28.70 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=15.1
Q ss_pred EEEEEeCCceeEEEEEE
Q 015705 97 FYALDLGGTNFRVLRVQ 113 (402)
Q Consensus 97 fLAlDlGGTNlRV~~V~ 113 (402)
.++||+|||..+++...
T Consensus 2 ~iGiDiGgT~~Kiv~~~ 18 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEE 18 (279)
T ss_pred eEEEEeCcceEEEEEEc
Confidence 58999999999998864
No 114
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=21.66 E-value=54 Score=31.28 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=19.4
Q ss_pred CCcHHHHHHHHHHHc----CCCceEEEEEec
Q 015705 204 GEDVVGELTKAMERI----GLDMRVAALVND 230 (402)
Q Consensus 204 G~Dv~~lL~~al~r~----~l~v~vvAIvND 230 (402)
|.-....|++.+++- |++++|++|-|+
T Consensus 105 G~la~~~l~~~~~~l~~~~~~~v~V~~V~N~ 135 (204)
T PF04459_consen 105 GVLAYPFLKPLVEKLNRIPGLEVEVVPVKNR 135 (204)
T ss_pred eHHHHHHHHHHHHHHhccCCCeEEEEEeecC
Confidence 555555566555443 789999999999
No 115
>PRK10664 transcriptional regulator HU subunit beta; Provisional
Probab=21.57 E-value=2.2e+02 Score=23.27 Aligned_cols=36 Identities=8% Similarity=0.180 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCC
Q 015705 39 AILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEG 74 (402)
Q Consensus 39 ~~l~~~~~~~~~~~~~L~~i~~~f~~em~~GL~~~~ 74 (402)
++++.+.+...++..+...+.+.|.+.+.+.|..++
T Consensus 5 eli~~ia~~~~~s~~~~~~~v~~~~~~i~~~L~~~~ 40 (90)
T PRK10664 5 QLIDKIAAGADISKAAAGRALDAIIASVTESLKEGD 40 (90)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 566777777789999999999999999999998743
No 116
>PF09907 DUF2136: Uncharacterized protein conserved in bacteria (DUF2136); InterPro: IPR018669 HigB (YgjN) is the toxin of the HigB-HigA toxin-antitoxin system, acting as a translation-dependent mRNA interferase. HigB inhibits protein synthesis by cleaving translated mRNAs within the coding region []. ; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=20.67 E-value=1.1e+02 Score=24.75 Aligned_cols=20 Identities=15% Similarity=0.630 Sum_probs=16.6
Q ss_pred ccEEEEEeCCceeEEE-EEEE
Q 015705 95 GLFYALDLGGTNFRVL-RVQL 114 (402)
Q Consensus 95 G~fLAlDlGGTNlRV~-~V~L 114 (402)
+.+.+.|+||.++|+. .|..
T Consensus 36 ~~~~vFnI~GN~yRlI~~I~f 56 (76)
T PF09907_consen 36 NNRVVFNIGGNKYRLIAKIDF 56 (76)
T ss_pred CCEEEEEcCCCcEEEEEEEEe
Confidence 6799999999999984 3555
Done!