BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015707
(402 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R8V|A Chain A, Native Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae
pdb|3B8G|A Chain A, Crysta Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
N-Acetyl-Glutamate
pdb|3D2P|A Chain A, Crystal Structure Of N-acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-arginine
pdb|3D2P|B Chain B, Crystal Structure Of N-acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-arginine
pdb|3D2M|A Chain A, Crystal Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-Glutamate
pdb|4I49|A Chain A, Structure Of Ngnags Bound With Bisubstrate Analog Coa-Nag
Length = 456
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 123 DFMNDIW---LCHSFGGKCYNFTAFQPAINVLKEVQAFLEANPTEIVTIIIEDYVTSPNG 179
D N +W L HS+GGK +N Q A +V +QA ++V + + D ++ P+G
Sbjct: 183 DAGNIVWMPPLGHSYGGKTFNLDMVQAAASVAVSLQA------EKLVYLTLSDGISRPDG 236
>pdb|2PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C Mutant D198e
Length = 298
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 69 LPFNRYSWLTTHNSFAKLRAKSPIGSVIIAPECQQDSITSQLNNG-----VRGLMLDTYD 123
+P R S TH+S + ++PI V Q+ Q+++G +RG + D
Sbjct: 21 IPLARISIPGTHDS-GTFKLQNPIKQV--WGMTQEYDFRYQMDHGARIFDIRGRLTDD-- 75
Query: 124 FMNDIWLCHSFGGKCYNFTAFQPAINVLKEVQAFLEANPTEIVTIIIEDYVTSPNGLTNV 183
N I L H G Y + IN E + FL+ NP+E + + ++ G +
Sbjct: 76 --NTIVLHH---GPLYLYVTLHEFIN---EAKQFLKDNPSETIIMSLKKEYEDMKGAEDS 127
Query: 184 FNAAGLKKYW 193
F++ KKY+
Sbjct: 128 FSSTFEKKYF 137
>pdb|1GYM|A Chain A, Phosphatidylinositol-Specific Phospholipase C In Complex
With Glucosamine-(Alpha-1-6)-Myo-Inositol
pdb|1PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C
pdb|1PTG|A Chain A, Phosphatidylinositol-specific Phospholipase C In Complex
With Myo-inositol
Length = 298
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 69 LPFNRYSWLTTHNSFAKLRAKSPIGSVIIAPECQQDSITSQLNNG-----VRGLMLDTYD 123
+P R S TH+S + ++PI V Q+ Q+++G +RG + D
Sbjct: 21 IPLARISIPGTHDS-GTFKLQNPIKQV--WGMTQEYDFRYQMDHGARIFDIRGRLTDD-- 75
Query: 124 FMNDIWLCHSFGGKCYNFTAFQPAINVLKEVQAFLEANPTEIVTIIIEDYVTSPNGLTNV 183
N I L H G Y + IN E + FL+ NP+E + + ++ G +
Sbjct: 76 --NTIVLHH---GPLYLYVTLHEFIN---EAKQFLKDNPSETIIMSLKKEYEDMKGAEDS 127
Query: 184 FNAAGLKKYW 193
F++ KKY+
Sbjct: 128 FSSTFEKKYF 137
>pdb|3PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C Mutant D274s
Length = 298
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 69 LPFNRYSWLTTHNSFAKLRAKSPIGSVIIAPECQQDSITSQLNNG-----VRGLMLDTYD 123
+P R S TH+S + ++PI V Q+ Q+++G +RG + D
Sbjct: 21 IPLARISIPGTHDS-GTFKLQNPIKQV--WGMTQEYDFRYQMDHGARIFDIRGRLTDD-- 75
Query: 124 FMNDIWLCHSFGGKCYNFTAFQPAINVLKEVQAFLEANPTEIVTIIIEDYVTSPNGLTNV 183
N I L H G Y + IN E + FL+ NP+E + + ++ G +
Sbjct: 76 --NTIVLHH---GPLYLYVTLHEFIN---EAKQFLKDNPSETIIMSLKKEYEDMKGAEDS 127
Query: 184 FNAAGLKKYW 193
F++ KKY+
Sbjct: 128 FSSTFEKKYF 137
>pdb|7PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C Mutant R163k
Length = 298
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 69 LPFNRYSWLTTHNSFAKLRAKSPIGSVIIAPECQQDSITSQLNNG-----VRGLMLDTYD 123
+P R S TH+S + ++PI V Q+ Q+++G +RG + D
Sbjct: 21 IPLARISIPGTHDS-GTFKLQNPIKQV--WGMTQEYDFRYQMDHGARIFDIRGRLTDD-- 75
Query: 124 FMNDIWLCHSFGGKCYNFTAFQPAINVLKEVQAFLEANPTEIVTIIIEDYVTSPNGLTNV 183
N I L H G Y + IN E + FL+ NP+E + + ++ G +
Sbjct: 76 --NTIVLHH---GPLYLYVTLHEFIN---EAKQFLKDNPSETIIMSLKKEYEDMKGAEDS 127
Query: 184 FNAAGLKKYW 193
F++ KKY+
Sbjct: 128 FSSTFEKKYF 137
>pdb|4PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C Mutant D274n
Length = 298
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 69 LPFNRYSWLTTHNSFAKLRAKSPIGSVIIAPECQQDSITSQLNNG-----VRGLMLDTYD 123
+P R S TH+S + ++PI V Q+ Q+++G +RG + D
Sbjct: 21 IPLARISIPGTHDS-GTFKLQNPIKQV--WGMTQEYDFRYQMDHGARIFDIRGRLTDD-- 75
Query: 124 FMNDIWLCHSFGGKCYNFTAFQPAINVLKEVQAFLEANPTEIVTIIIEDYVTSPNGLTNV 183
N I L H G Y + IN E + FL+ NP+E + + ++ G +
Sbjct: 76 --NTIVLHH---GPLYLYVTLHEFIN---EAKQFLKDNPSETIIMSLKKEYEDMKGAEDS 127
Query: 184 FNAAGLKKYW 193
F++ KKY+
Sbjct: 128 FSSTFEKKYF 137
>pdb|2OR2|A Chain A, Structure Of The W47aW242A MUTANT OF BACTERIAL
Phosphatidylinositol-Specific Phospholipase C
pdb|2OR2|B Chain B, Structure Of The W47aW242A MUTANT OF BACTERIAL
Phosphatidylinositol-Specific Phospholipase C
Length = 296
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 69 LPFNRYSWLTTHNSFAKLRAKSPIGSVIIAPECQQDSITSQLNNG-----VRGLMLDTYD 123
+P R S TH+S + ++PI V A Q+ Q+++G +RG + D
Sbjct: 21 IPLARISIPGTHDS-GTFKLQNPIKQV--AGMTQEYDFRYQMDHGARIFDIRGRLTDD-- 75
Query: 124 FMNDIWLCHSFGGKCYNFTAFQPAINVLKEVQAFLEANPTEIVTIIIEDYVTSPNGLTNV 183
N I L H G Y + IN E + FL+ NP+E + + ++ G
Sbjct: 76 --NTIVLHH---GPLYLYVTLHEFIN---EAKQFLKDNPSETIIMSLKKEYEDMKGAEGS 127
Query: 184 FNAAGLKKYW 193
F++ K Y+
Sbjct: 128 FSSTFEKNYF 137
>pdb|3EA1|A Chain A, Crystal Structure Of The Y247sY251S MUTANT OF
Phosphatidylinositol-Specific Phospholipase C From
Bacillus Thuringiensis
pdb|3EA1|B Chain B, Crystal Structure Of The Y247sY251S MUTANT OF
Phosphatidylinositol-Specific Phospholipase C From
Bacillus Thuringiensis
pdb|3EA2|A Chain A, Crystal Structure Of The Myo-Inositol Bound Y247sY251S
Mutant Of Phosphatidylinositol-Specific Phospholipase C
From Bacillus Thuringiensis
pdb|3EA2|B Chain B, Crystal Structure Of The Myo-Inositol Bound Y247sY251S
Mutant Of Phosphatidylinositol-Specific Phospholipase C
From Bacillus Thuringiensis
Length = 298
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 18/130 (13%)
Query: 69 LPFNRYSWLTTHNSFAKLRAKSPIGSVIIAPECQQDSITSQLNNG-----VRGLMLDTYD 123
+P R S TH+S + ++PI V Q+ Q+++G +RG + D
Sbjct: 21 IPLARISIPGTHDS-GTFKLQNPIKQV--WGMTQEYDFRYQMDHGARIFDIRGRLTDD-- 75
Query: 124 FMNDIWLCHSFGGKCYNFTAFQPAINVLKEVQAFLEANPTEIVTIIIEDYVTSPNGLTNV 183
N I L H G Y + IN E + FL+ NP+E + + ++ G
Sbjct: 76 --NTIVLHH---GPLYLYVTLHEFIN---EAKQFLKDNPSETIIMSLKKEYEDMKGAEGS 127
Query: 184 FNAAGLKKYW 193
F++ K Y+
Sbjct: 128 FSSTFEKNYF 137
>pdb|1T6M|A Chain A, X-Ray Structure Of The R70d Pi-Plc Enzyme: Insight Into
The Role Of Calcium And Surrounding Amino Acids On
Active Site Geometry And Catalysis.
pdb|1T6M|B Chain B, X-Ray Structure Of The R70d Pi-Plc Enzyme: Insight Into
The Role Of Calcium And Surrounding Amino Acids On
Active Site Geometry And Catalysis
Length = 299
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 14/128 (10%)
Query: 69 LPFNRYSWLTTHNSFAKLRAKSPIGSVIIAPECQQDSITSQLNNGVRGLMLD---TYDFM 125
+P R S TH+S + ++PI V Q+ Q+++G R +D T D
Sbjct: 22 IPLARISIPGTHDS-GTFKLQNPIKQV--WGMTQEYDFRYQMDHGARIFDIDGRLTDD-- 76
Query: 126 NDIWLCHSFGGKCYNFTAFQPAINVLKEVQAFLEANPTEIVTIIIEDYVTSPNGLTNVFN 185
N I L H G Y + IN E + FL+ NP+E + + ++ G F+
Sbjct: 77 NTIVLHH---GPLYLYVTLHEFIN---EAKQFLKDNPSETIIMSLKKEYEDMKGAEGSFS 130
Query: 186 AAGLKKYW 193
+ K Y+
Sbjct: 131 STFEKNYF 138
>pdb|3EA3|A Chain A, Crystal Structure Of The Y246sY247SY248SY251S MUTANT OF
Phosphatidylinositol-Specific Phospholipase C From
Bacillus Thuringiensis
pdb|3EA3|B Chain B, Crystal Structure Of The Y246sY247SY248SY251S MUTANT OF
Phosphatidylinositol-Specific Phospholipase C From
Bacillus Thuringiensis
Length = 298
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 18/130 (13%)
Query: 69 LPFNRYSWLTTHNSFAKLRAKSPIGSVIIAPECQQDSITSQLNNG-----VRGLMLDTYD 123
+P R S TH+S + ++PI V Q+ Q+++G +RG + D
Sbjct: 21 IPLARISIPGTHDS-GTFKLQNPIKQV--WGMTQEYDFRYQMDHGARIFDIRGRLTDD-- 75
Query: 124 FMNDIWLCHSFGGKCYNFTAFQPAINVLKEVQAFLEANPTEIVTIIIEDYVTSPNGLTNV 183
N I L H G Y + IN E + FL+ NP+E + + ++ G
Sbjct: 76 --NTIVLHH---GPLYLYVTLHEFIN---EAKQFLKDNPSETIIMSLKKEYEDMKGAEGS 127
Query: 184 FNAAGLKKYW 193
F++ K Y+
Sbjct: 128 FSSTFEKNYF 137
>pdb|2R98|A Chain A, Crystal Structure Of N-Acetylglutamate Synthase (Selenomet
Substituted) From Neisseria Gonorrhoeae
Length = 456
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 123 DFMNDIW---LCHSFGGKCYNFTAFQPAINVLKEVQAFLEANPTEIVTIIIEDYVTSPNG 179
D N +W L HS+GGK +N Q A +V +QA ++V + + D ++ P+G
Sbjct: 183 DAGNIVWXPPLGHSYGGKTFNLDXVQAAASVAVSLQA------EKLVYLTLSDGISRPDG 236
>pdb|1LQA|A Chain A, Tas Protein From Escherichia Coli In Complex With Nadph
pdb|1LQA|B Chain B, Tas Protein From Escherichia Coli In Complex With Nadph
Length = 346
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 12/140 (8%)
Query: 32 DSSCDNGLHCETCVANKNFRPRCTRIHPVDPISKVKGLPFNRY-SWLTTHNSFAKLRAKS 90
+S D + VA ++PV P + +GL +WL H S KL S
Sbjct: 27 NSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIAS 86
Query: 91 PIG------SVIIAPECQQD--SITSQLNNGVRGLMLDTYDFMNDIWL---CHSFGGKCY 139
+ I P+ D +I L++ ++ L D D W + FG Y
Sbjct: 87 KVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGY 146
Query: 140 NFTAFQPAINVLKEVQAFLE 159
++T PA+++L + A E
Sbjct: 147 SWTDSAPAVSLLDTLDALAE 166
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 63 ISKVKGLPFNRYSWLTTHNSFAKLRAKSPIGSVIIAPECQQDSITSQLNNGVRGLML 119
IS VK L F + WL T F+K ++ IG+ II+ ++ LN RG ML
Sbjct: 1687 ISLVKSLTFEKERWLNTTKQFSK-TSQELIGNCIIS--SIYETYFGHLNERERGDML 1740
>pdb|1TMO|A Chain A, Trimethylamine N-Oxide Reductase From Shewanella Massilia
Length = 829
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 62 PISKVKGLPFNRYSWLTTHNSFAKLRAKSPIGSVIIAPECQQDSITSQLNNGVRGLM 118
P++ + N WLTT + F + K G + D + + NG+RG++
Sbjct: 26 PLNALAKAGINEDEWLTTGSHFGAFKMKRKNGVIAEVKPFDLDKYPTDMINGIRGMV 82
>pdb|1FRV|B Chain B, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|1FRV|D Chain D, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
Length = 536
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 58 HPVDPISKVKGLPF---NRYSWLTTHNSFAKLRAKSPIGSVIIAPECQQDSITSQLNNGV 114
HP ++K K F +RYSW+ + P+ SV++A + + ++ +
Sbjct: 335 HPYKGVTKPKWTEFHGEDRYSWMKAPRYKGEAFEVGPLASVLVAYAKKHEPTVKAVDLVL 394
Query: 115 RGLMLDTYDFMNDIWLCHSFGGKCYNFTAFQPAINVLKEVQAFLEANPTEIVTIIIEDYV 174
+ L + + + + G +C TA Q L +++A ++A ++ T Y
Sbjct: 395 KTLGVGPEALFSTLGRTAARGIQC--LTAAQEVEVWLDKLEANVKAGKDDLYTDW--QYP 450
Query: 175 TSPNGLTNVFNAAGLKKYWF 194
T G+ V G+ +W
Sbjct: 451 TESQGVGFVNAPRGMLSHWI 470
>pdb|2FRV|L Chain L, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|B Chain B, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|D Chain D, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|F Chain F, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|H Chain H, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|J Chain J, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
Length = 536
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 58 HPVDPISKVKGLPF---NRYSWLTTHNSFAKLRAKSPIGSVIIAPECQQDSITSQLNNGV 114
HP ++K K F +RYSW+ + P+ SV++A + + ++ +
Sbjct: 335 HPYKGVTKPKWTEFHGEDRYSWMKAPRYKGEAFEVGPLASVLVAYAKKHEPTVKAVDLVL 394
Query: 115 RGLMLDTYDFMNDIWLCHSFGGKCYNFTAFQPAINVLKEVQAFLEANPTEIVTIIIEDYV 174
+ L + + + + G +C TA Q L +++A ++A ++ T Y
Sbjct: 395 KTLGVGPEALFSTLGRTAARGIQC--LTAAQEVEVWLDKLEANVKAGKDDLYTDW--QYP 450
Query: 175 TSPNGLTNVFNAAGLKKYWF 194
T G+ V G+ +W
Sbjct: 451 TESQGVGFVNAPRGMLSHWI 470
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,428,829
Number of Sequences: 62578
Number of extensions: 521843
Number of successful extensions: 958
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 956
Number of HSP's gapped (non-prelim): 18
length of query: 402
length of database: 14,973,337
effective HSP length: 101
effective length of query: 301
effective length of database: 8,652,959
effective search space: 2604540659
effective search space used: 2604540659
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)