Query 015708
Match_columns 402
No_of_seqs 221 out of 1556
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 08:50:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 1.4E-48 3.1E-53 390.0 32.7 248 144-399 63-334 (365)
2 KOG0698 Serine/threonine prote 100.0 5.2E-49 1.1E-53 390.1 28.8 251 148-399 42-308 (330)
3 KOG0697 Protein phosphatase 1B 100.0 2.2E-48 4.8E-53 361.4 22.6 254 143-400 19-296 (379)
4 PTZ00224 protein phosphatase 2 100.0 1.9E-45 4.1E-50 368.8 29.7 241 143-398 19-274 (381)
5 PF00481 PP2C: Protein phospha 100.0 1E-46 2.2E-51 360.6 18.5 236 147-387 1-254 (254)
6 COG0631 PTC1 Serine/threonine 100.0 1.7E-43 3.7E-48 340.0 24.9 240 145-399 7-256 (262)
7 cd00143 PP2Cc Serine/threonine 100.0 2.7E-38 5.7E-43 298.9 28.9 242 147-394 2-254 (254)
8 smart00332 PP2Cc Serine/threon 100.0 1E-37 2.3E-42 296.0 28.4 241 145-392 5-255 (255)
9 KOG0699 Serine/threonine prote 100.0 5.5E-39 1.2E-43 307.8 19.4 157 237-396 329-504 (542)
10 PRK14559 putative protein seri 100.0 2.9E-38 6.3E-43 333.5 26.8 244 145-400 374-640 (645)
11 KOG0700 Protein phosphatase 2C 100.0 6.6E-38 1.4E-42 307.0 18.3 223 157-382 82-378 (390)
12 KOG1323 Serine/threonine phosp 100.0 3.8E-28 8.2E-33 231.3 21.0 221 174-396 142-488 (493)
13 KOG1379 Serine/threonine prote 99.9 1.3E-22 2.9E-27 193.6 20.6 203 160-393 91-329 (330)
14 KOG0618 Serine/threonine phosp 99.9 1.9E-22 4.1E-27 213.9 16.6 247 143-397 519-774 (1081)
15 PF13672 PP2C_2: Protein phosp 99.8 1.4E-19 3.1E-24 167.8 16.6 178 151-363 3-193 (212)
16 smart00331 PP2C_SIG Sigma fact 99.8 8.4E-17 1.8E-21 147.0 21.2 173 157-379 14-192 (193)
17 TIGR02865 spore_II_E stage II 99.6 2.7E-14 5.8E-19 155.8 22.2 188 156-394 563-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.6 1.4E-12 3.1E-17 118.6 22.7 176 174-395 2-193 (193)
19 COG2208 RsbU Serine phosphatas 98.4 3.1E-05 6.8E-10 78.2 21.1 188 160-395 162-366 (367)
20 PRK10693 response regulator of 53.8 1E+02 0.0022 30.1 9.7 49 222-270 209-259 (303)
21 PF05933 Fun_ATP-synt_8: Funga 52.5 13 0.00029 26.3 2.3 20 4-23 10-29 (48)
22 COG3700 AphA Acid phosphatase 39.5 49 0.0011 30.3 4.4 45 338-382 71-130 (237)
23 PF09436 DUF2016: Domain of un 34.3 24 0.00052 27.3 1.4 21 335-355 24-44 (72)
24 PF01436 NHL: NHL repeat; Int 20.4 1.8E+02 0.004 17.6 3.4 21 245-265 8-28 (28)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=1.4e-48 Score=389.98 Aligned_cols=248 Identities=34% Similarity=0.519 Sum_probs=216.4
Q ss_pred eCeeEEEEeecCCCCCCCceEEEecccCC--------CCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHhhcCCCchhH
Q 015708 144 EGRDFLLACKRGRREVMEDGYGFMLDIHG--------DPKQAFFTVIDGHGGRAAAEYVAGNLGRNIVKELGNVGDEGIQ 215 (402)
Q Consensus 144 ~~~~~~~~s~~G~R~~nEDa~~v~~~~~~--------~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~~~~~~~ 215 (402)
.-+.++..|.+|.|+.|||++++..++.. .....||||||||||+.+|++|++++++.+.+.... ...
T Consensus 63 ~~~~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~----~~~ 138 (365)
T PLN03145 63 PVVRSGAWADIGSRSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDF----PRE 138 (365)
T ss_pred CceEEEEEccccCCCCCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhcc----chh
Confidence 34678999999999999999987654321 124689999999999999999999999998764322 346
Q ss_pred HHHHHHHHHHHHHHHHHhcC-----CCCCccEEEEEEeCCeEEEEEECCeeEEEEeCCeeeeecccCCCCcHHHhhhhhh
Q 015708 216 LEQAMRVGYQVTDKEFLSQG-----VTSGACTASVLLKDSELHVANAGDCRVVLSRNGVADSLTKDHRLSREDERSRIEN 290 (402)
Q Consensus 216 ~~~al~~a~~~~~~~~~~~~-----~~~GtTav~ali~~~~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~E~~RI~~ 290 (402)
+.++|.++|.++++.+.+.. ..+|||++++++.++++|+||+||||+|++++|++++||+||++.++.|+.||.+
T Consensus 139 ~~~al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~ 218 (365)
T PLN03145 139 IEKVVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEA 218 (365)
T ss_pred HHHHHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHHHH
Confidence 78899999999999987532 4589999999999999999999999999999999999999999999999999999
Q ss_pred cCceeeccCCcccccCceeccccccCccccc-------cccccceeeEEEecCCCeEEEEEccccCCCCCHHHHHHHHH-
Q 015708 291 AGAYVHFCNGAWRVQGSLAVSRAIGDLHLKE-------WIISEPETKRLSLTSDCEFLIMASDGLWDKVNAQEAVDVVS- 362 (402)
Q Consensus 291 ~gg~v~~~~g~~rv~g~l~vsralGd~~~k~-------~v~~~Pdi~~~~l~~~~d~LILaSDGlwd~ls~~ei~~iv~- 362 (402)
.||.+... |++|.+++||+|||..+|. .++++|++..++++++|+|||||||||||+++++++++++.
T Consensus 219 ~Gg~v~~g----~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~~ 294 (365)
T PLN03145 219 SGGYVYDG----YLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARR 294 (365)
T ss_pred cCCceecc----eECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHHHHHHH
Confidence 99998643 8899999999999987753 37899999999999998999999999999999999987763
Q ss_pred ---cCCCHHHHHHHHHHHHHhCCCCCCeEEEEEEcCCCCC
Q 015708 363 ---RNKSSMESCKNLIDISSSRGNMDDITVMVINLDKFVP 399 (402)
Q Consensus 363 ---~~~~~~~aa~~Lv~~A~~rgs~DNiTvIVV~l~~~~~ 399 (402)
...++.++|+.|+++|+.+|+.||||||||+|+.-.+
T Consensus 295 ~l~~~~~p~~aa~~Lv~~Al~rgs~DNITvIVV~l~~~~~ 334 (365)
T PLN03145 295 RLQEHNDPVMCSKELVDEALKRKSGDNLAVVVVCFQSQPP 334 (365)
T ss_pred HHhcCCCHHHHHHHHHHHHHhCCCCCCEEEEEEEeecCCC
Confidence 3468999999999999999999999999999987443
No 2
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-49 Score=390.07 Aligned_cols=251 Identities=45% Similarity=0.674 Sum_probs=228.3
Q ss_pred EEEEeecCCCCCCCceEEEecccC----CCC-CceEEEEEcCCCchhHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHH
Q 015708 148 FLLACKRGRREVMEDGYGFMLDIH----GDP-KQAFFTVIDGHGGRAAAEYVAGNLGRNIVKELGNVGDEGIQLEQAMRV 222 (402)
Q Consensus 148 ~~~~s~~G~R~~nEDa~~v~~~~~----~~~-~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~~~~~~~~~~al~~ 222 (402)
.+.++.+|.|..|||++.....+. +.. ...||||||||||..+|+|++++++..+.+........ ..++.++++
T Consensus 42 ~~~~~~~~~r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~-~~~~~a~~~ 120 (330)
T KOG0698|consen 42 GSLLSIRGRRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDR-QDVKDALRR 120 (330)
T ss_pred eEEEecCCCCCccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccch-HHHHHHHHH
Confidence 455688999999999998877643 223 58999999999999999999999999999988765422 468999999
Q ss_pred HHH-HHHHHHHhc---CCCCCccEEEEEEeCC-eEEEEEECCeeEEEEeCC-eeeeecccCCCCcHHHhhhhhhcCceee
Q 015708 223 GYQ-VTDKEFLSQ---GVTSGACTASVLLKDS-ELHVANAGDCRVVLSRNG-VADSLTKDHRLSREDERSRIENAGAYVH 296 (402)
Q Consensus 223 a~~-~~~~~~~~~---~~~~GtTav~ali~~~-~l~vanvGDSRa~l~r~g-~~~~LT~DH~~~~~~E~~RI~~~gg~v~ 296 (402)
+|. ++|..+.+. ...+|+|++++++.++ ++||||+|||||+|+++| .+++||.||+|..++|+.||+..||++.
T Consensus 121 ~F~~~~D~~~~~~~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~GG~v~ 200 (330)
T KOG0698|consen 121 AFLTKTDSEFLEKREDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAGGRVS 200 (330)
T ss_pred HHHHHHHHHHHhhccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcCCEEE
Confidence 999 699999975 4678999999998865 999999999999999866 8999999999999999999999999999
Q ss_pred ccCCcccccCceeccccccCcccc-ccccccceeeEEEecCCCeEEEEEccccCCCCCHHHHHHHHHc----CCCHHHHH
Q 015708 297 FCNGAWRVQGSLAVSRAIGDLHLK-EWIISEPETKRLSLTSDCEFLIMASDGLWDKVNAQEAVDVVSR----NKSSMESC 371 (402)
Q Consensus 297 ~~~g~~rv~g~l~vsralGd~~~k-~~v~~~Pdi~~~~l~~~~d~LILaSDGlwd~ls~~ei~~iv~~----~~~~~~aa 371 (402)
...+.||++|.|+++|+|||..+| ++|+++|++....+++.++|||||||||||++++||++++++. ...+..++
T Consensus 201 ~~~~~~Rv~G~LavsRa~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~~~~a~ 280 (330)
T KOG0698|consen 201 NWGGVWRVNGVLAVSRAFGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELASISSPLAAA 280 (330)
T ss_pred EcCCcceEeceEEEeeecCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhccccHHHHH
Confidence 998899999999999999999999 8999999999999999889999999999999999999999987 56889999
Q ss_pred HHHHHHHHhCCCCCCeEEEEEEcCCCCC
Q 015708 372 KNLIDISSSRGNMDDITVMVINLDKFVP 399 (402)
Q Consensus 372 ~~Lv~~A~~rgs~DNiTvIVV~l~~~~~ 399 (402)
..|.+.|..+++.||||||||.|.....
T Consensus 281 ~~l~~~a~~~~s~DnitvvvV~l~~~~~ 308 (330)
T KOG0698|consen 281 KLLATEALSRGSKDNITVVVVRLKSSPK 308 (330)
T ss_pred HHHHHHHhhcCCCCCeEEEEEEecCccc
Confidence 9999999999999999999999988864
No 3
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-48 Score=361.43 Aligned_cols=254 Identities=29% Similarity=0.469 Sum_probs=229.7
Q ss_pred eeCeeEEEEeecCCCCCCCceEEEecccC-CCCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHhhcCC----CchhHHH
Q 015708 143 VEGRDFLLACKRGRREVMEDGYGFMLDIH-GDPKQAFFTVIDGHGGRAAAEYVAGNLGRNIVKELGNVG----DEGIQLE 217 (402)
Q Consensus 143 ~~~~~~~~~s~~G~R~~nEDa~~v~~~~~-~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~~----~~~~~~~ 217 (402)
-+|.+|+++|.+|+|-.|||++.+...+. +..++.||+|||||.|+..|..|+++|.+.|........ ..-++.+
T Consensus 19 GNglryg~SSMQGWR~eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gsv~~~~ 98 (379)
T KOG0697|consen 19 GNGLRYGVSSMQGWRVEMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGSVENVE 98 (379)
T ss_pred CCceeeeeccccchhhhhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCcHHHHH
Confidence 36889999999999999999998766543 347899999999999999999999999999876655433 1246788
Q ss_pred HHHHHHHHHHHHHHHhcC------CCCCccEEEEEEeCCeEEEEEECCeeEEEEeCCeeeeecccCCCCcHHHhhhhhhc
Q 015708 218 QAMRVGYQVTDKEFLSQG------VTSGACTASVLLKDSELHVANAGDCRVVLSRNGVADSLTKDHRLSREDERSRIENA 291 (402)
Q Consensus 218 ~al~~a~~~~~~~~~~~~------~~~GtTav~ali~~~~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~E~~RI~~~ 291 (402)
.-|+.+|.++|+...... .++|+||+++++...++|++|+||||++++|+|+.+.-|+||+|..+.|++||.++
T Consensus 99 ~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~EkeRIqnA 178 (379)
T KOG0697|consen 99 KGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKERIQNA 178 (379)
T ss_pred hhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCCCCChHHHHHHhcC
Confidence 999999999999876543 56999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeccCCcccccCceeccccccCcccc---------ccccccceeeEEEecCCCeEEEEEccccCCCCCHHHHHHHHH
Q 015708 292 GAYVHFCNGAWRVQGSLAVSRAIGDLHLK---------EWIISEPETKRLSLTSDCEFLIMASDGLWDKVNAQEAVDVVS 362 (402)
Q Consensus 292 gg~v~~~~g~~rv~g~l~vsralGd~~~k---------~~v~~~Pdi~~~~l~~~~d~LILaSDGlwd~ls~~ei~~iv~ 362 (402)
||.|.-. |++|.|+|+|||||..+| ++|+++|++........|+|+||||||+||+++++|+.++++
T Consensus 179 GGSVMIq----RvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneelcefv~ 254 (379)
T KOG0697|consen 179 GGSVMIQ----RVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEFVK 254 (379)
T ss_pred CCeEEEE----EecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHHHHH
Confidence 9999988 999999999999999998 469999999999999888999999999999999999999996
Q ss_pred c----CCCHHHHHHHHHHHHHhCCCCCCeEEEEEEcCCCCCC
Q 015708 363 R----NKSSMESCKNLIDISSSRGNMDDITVMVINLDKFVPK 400 (402)
Q Consensus 363 ~----~~~~~~aa~~Lv~~A~~rgs~DNiTvIVV~l~~~~~~ 400 (402)
. ..+...+|...++.++-+|+.||+|+|+|-|..-++.
T Consensus 255 sRl~Vt~dL~~vcn~VvDtCLhKGSRDNMsivlvcfp~APkv 296 (379)
T KOG0697|consen 255 SRLEVTSDLEEVCNDVVDTCLHKGSRDNMSIVLVCFPGAPKV 296 (379)
T ss_pred hhheecccHHHHHHHHHHHHHhccCccCceEEEEecCCCCCC
Confidence 5 4688999999999999999999999999999876654
No 4
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=1.9e-45 Score=368.84 Aligned_cols=241 Identities=31% Similarity=0.460 Sum_probs=209.6
Q ss_pred eeCeeEEEEeecCCCCCCCceEEEecccCCCCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHH
Q 015708 143 VEGRDFLLACKRGRREVMEDGYGFMLDIHGDPKQAFFTVIDGHGGRAAAEYVAGNLGRNIVKELGNVGDEGIQLEQAMRV 222 (402)
Q Consensus 143 ~~~~~~~~~s~~G~R~~nEDa~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~~~~~~~~~~al~~ 222 (402)
...+.++..|.+|.|+.|||++.+... .+..+|||||||||..+++++++.+.+.+.+.... ...+.|++
T Consensus 19 ~~~~~~g~~s~~G~R~~nED~~~v~~~----~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~~------~~~~~l~~ 88 (381)
T PTZ00224 19 NSIFRCASACVNGYRESMEDAHLLYLT----DDWGFFGVFDGHVNDECSQYLARAWPQALEKEPEP------MTDERMEE 88 (381)
T ss_pred CccEEEEEEeCCCCCCCCCCeeEeccC----CCceEEEEEeCCCcHHHHHHHHHHHHHHHHhcccc------ccHHHHHH
Confidence 346789999999999999999876432 34579999999999999999999998777543211 12345889
Q ss_pred HHHHHHHHHHhcCCCCCccEEEEEEe-CCeEEEEEECCeeEEEEeCCeeeeecccCCCCcHHHhhhhhhcCceeeccCCc
Q 015708 223 GYQVTDKEFLSQGVTSGACTASVLLK-DSELHVANAGDCRVVLSRNGVADSLTKDHRLSREDERSRIENAGAYVHFCNGA 301 (402)
Q Consensus 223 a~~~~~~~~~~~~~~~GtTav~ali~-~~~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~~~g~ 301 (402)
++..+++.+.+....+|||++++++. +.+++|+|+||||+|++|+|++++||+||++.++.|++||...||.++..
T Consensus 89 a~~~~d~~i~~~~~~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~~--- 165 (381)
T PTZ00224 89 LCLEIDEEWMDSGREGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRIEACGGRVVSN--- 165 (381)
T ss_pred HHHHHHHHHHhcccCCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhHHHHccCEeccc---
Confidence 99999999987777789999998886 57999999999999999999999999999999999999999999999764
Q ss_pred ccccCceeccccccCcccc---------ccccccceeeEEEecCCCeEEEEEccccCC-CCCHHHHHHHHH----cCCCH
Q 015708 302 WRVQGSLAVSRAIGDLHLK---------EWIISEPETKRLSLTSDCEFLIMASDGLWD-KVNAQEAVDVVS----RNKSS 367 (402)
Q Consensus 302 ~rv~g~l~vsralGd~~~k---------~~v~~~Pdi~~~~l~~~~d~LILaSDGlwd-~ls~~ei~~iv~----~~~~~ 367 (402)
|++|.+++||+|||..+| +.++++|++..+.+.++ |+|||||||||| +++++|+.+++. ...++
T Consensus 166 -Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~~-D~llLaSDGL~d~~ls~eEi~~iv~~~l~~~~~~ 243 (381)
T PTZ00224 166 -RVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQSN-DFIILACDGVFEGNFSNEEVVAFVKEQLETCDDL 243 (381)
T ss_pred -cccCceeeecccCCcccccccccccccCcceeeeEEEEEECCCC-CEEEEECCCcCcCccCHHHHHHHHHHHHhcCCCH
Confidence 899999999999997654 34678999999999987 899999999999 799999999986 34678
Q ss_pred HHHHHHHHHHHHhCCCCCCeEEEEEEcCCCC
Q 015708 368 MESCKNLIDISSSRGNMDDITVMVINLDKFV 398 (402)
Q Consensus 368 ~~aa~~Lv~~A~~rgs~DNiTvIVV~l~~~~ 398 (402)
..+|+.|+++|+.+|+.||||||||++...+
T Consensus 244 ~~aA~~Lv~~A~~rGs~DNITvIvV~~~~~~ 274 (381)
T PTZ00224 244 AVVAGRVCDEAIRRGSKDNISCLIVQLKDGA 274 (381)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEEEeeCCC
Confidence 9999999999999999999999999997654
No 5
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=1e-46 Score=360.59 Aligned_cols=236 Identities=40% Similarity=0.631 Sum_probs=204.5
Q ss_pred eEEEEeecCCCCCCCceEEEecccC---CCCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHH
Q 015708 147 DFLLACKRGRREVMEDGYGFMLDIH---GDPKQAFFTVIDGHGGRAAAEYVAGNLGRNIVKELGNVGDEGIQLEQAMRVG 223 (402)
Q Consensus 147 ~~~~~s~~G~R~~nEDa~~v~~~~~---~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~~~~~~~~~~al~~a 223 (402)
.+++.+.+|.|..|||++.+..++. +.....+|||||||||..+++++++.+++.+.+....... ..+.++|..+
T Consensus 1 ~~~~~~~~g~r~~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~--~~~~~al~~a 78 (254)
T PF00481_consen 1 DYGVSSMQGVRKEMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDG--NDIEEALRQA 78 (254)
T ss_dssp EEEEEEEECTSSSHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHH
T ss_pred CcCeecCCCCCCcccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccc--cchhhcccce
Confidence 4788999999999999999988663 4567899999999999999999999999888887765432 2689999999
Q ss_pred HHH-HHHHHHh-----cCCCCCccEEEEEEeCCeEEEEEECCeeEEEEeCCeee-eecccCCCCcHHHhhhhhhcCceee
Q 015708 224 YQV-TDKEFLS-----QGVTSGACTASVLLKDSELHVANAGDCRVVLSRNGVAD-SLTKDHRLSREDERSRIENAGAYVH 296 (402)
Q Consensus 224 ~~~-~~~~~~~-----~~~~~GtTav~ali~~~~l~vanvGDSRa~l~r~g~~~-~LT~DH~~~~~~E~~RI~~~gg~v~ 296 (402)
|.+ +++.+.. ....+||||+++++.++++|+||+||||||+++++... +||+||+|.++.|+.||...||.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~ 158 (254)
T PF00481_consen 79 FLAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVS 158 (254)
T ss_dssp HHHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEE
T ss_pred eeecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccceeeccccccc
Confidence 999 8888876 34789999999999999999999999999999999888 9999999999999999999999998
Q ss_pred ccCCcccccCceeccccccCccccc----cccccceeeEEEecCCCeEEEEEccccCCCCCHHHHHHHHHcCCC----HH
Q 015708 297 FCNGAWRVQGSLAVSRAIGDLHLKE----WIISEPETKRLSLTSDCEFLIMASDGLWDKVNAQEAVDVVSRNKS----SM 368 (402)
Q Consensus 297 ~~~g~~rv~g~l~vsralGd~~~k~----~v~~~Pdi~~~~l~~~~d~LILaSDGlwd~ls~~ei~~iv~~~~~----~~ 368 (402)
. .+|+.|.|++||+|||..+|+ +|+++|++..++++++++|||||||||||+++++|+++++....+ |.
T Consensus 159 ~---~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~~~~ 235 (254)
T PF00481_consen 159 E---NGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSGRSPQ 235 (254)
T ss_dssp E---TEEETTTBSSSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHSHHH
T ss_pred c---chhhhhccccccccccccccccccceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHHHHHhcCCcHH
Confidence 6 459999999999999999998 899999999999999977999999999999999999999976544 89
Q ss_pred HHHHHHHHHHHhCCCCCCe
Q 015708 369 ESCKNLIDISSSRGNMDDI 387 (402)
Q Consensus 369 ~aa~~Lv~~A~~rgs~DNi 387 (402)
.+|+.|+++|+++|+.|||
T Consensus 236 ~~a~~L~~~A~~~gs~DNi 254 (254)
T PF00481_consen 236 EAAEKLVDEAIARGSKDNI 254 (254)
T ss_dssp HHHHHHHHHHHHTTHHSHE
T ss_pred HHHHHHHHHHHhcCCCCCC
Confidence 9999999999999999997
No 6
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-43 Score=340.03 Aligned_cols=240 Identities=29% Similarity=0.453 Sum_probs=209.5
Q ss_pred CeeEEEEeecCC-CCCCCceEEEecccCCCCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHhhcCCCchhH--HHHHHH
Q 015708 145 GRDFLLACKRGR-REVMEDGYGFMLDIHGDPKQAFFTVIDGHGGRAAAEYVAGNLGRNIVKELGNVGDEGIQ--LEQAMR 221 (402)
Q Consensus 145 ~~~~~~~s~~G~-R~~nEDa~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~~~~~~~--~~~al~ 221 (402)
.+.++..|..|. |..|||++.+..+..+.. ..||+|||||||+.++++||+.+++.+.+.+......... ..+.+.
T Consensus 7 ~~~~~~~s~~g~~R~~NeD~~~~~~~~~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~l~ 85 (262)
T COG0631 7 SLKVAGLSDVGTVRKHNEDAFLIKPNENGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEELLK 85 (262)
T ss_pred eeeeeeeccCCCccCCCCcceeeccccCCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHH
Confidence 456778888888 888999999876443333 6799999999999999999999999999998765433222 789999
Q ss_pred HHHHHHHHHHHhcC------CCCCccEEEEEEeCCeEEEEEECCeeEEEEeCCeeeeecccCCCCcHHHhhhh-hhcCce
Q 015708 222 VGYQVTDKEFLSQG------VTSGACTASVLLKDSELHVANAGDCRVVLSRNGVADSLTKDHRLSREDERSRI-ENAGAY 294 (402)
Q Consensus 222 ~a~~~~~~~~~~~~------~~~GtTav~ali~~~~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~E~~RI-~~~gg~ 294 (402)
+++..+++.+.... ..+|||++++++.++++++|||||||+|++|+|.+++||.||++.+..++.++ .+.++.
T Consensus 86 ~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~~~~~~~~~~~ 165 (262)
T COG0631 86 EAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQRGIITPEEAR 165 (262)
T ss_pred HHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHHHHHHhcCCCHHHHH
Confidence 99999999887653 67899999999999999999999999999999999999999999999887775 444455
Q ss_pred eeccCCcccccCceeccccccCccccccccccceeeEEEecCCCeEEEEEccccCCCCCHHHHHHHHHcCCCHHHHHHHH
Q 015708 295 VHFCNGAWRVQGSLAVSRAIGDLHLKEWIISEPETKRLSLTSDCEFLIMASDGLWDKVNAQEAVDVVSRNKSSMESCKNL 374 (402)
Q Consensus 295 v~~~~g~~rv~g~l~vsralGd~~~k~~v~~~Pdi~~~~l~~~~d~LILaSDGlwd~ls~~ei~~iv~~~~~~~~aa~~L 374 (402)
.+++.+ ++||+||+... ..|++....++++ ||||||||||||.+++++++++++...+++++++.|
T Consensus 166 ~~~~~~--------~ltralG~~~~-----~~p~~~~~~~~~~-d~llL~SDGl~d~v~~~~i~~il~~~~~~~~~~~~l 231 (262)
T COG0631 166 SHPRRN--------ALTRALGDFDL-----LEPDITELELEPG-DFLLLCSDGLWDVVSDDEIVDILKNSETPQEAADKL 231 (262)
T ss_pred hCccch--------hhhhhcCCCcc-----cceeEEEEEcCCC-CEEEEECCCCccCcCHHHHHHHHhcCCCHHHHHHHH
Confidence 555433 89999999985 7999999999998 999999999999999999999999888999999999
Q ss_pred HHHHHhCCCCCCeEEEEEEcCCCCC
Q 015708 375 IDISSSRGNMDDITVMVINLDKFVP 399 (402)
Q Consensus 375 v~~A~~rgs~DNiTvIVV~l~~~~~ 399 (402)
++.|+.+|+.||+|+++|++..+.+
T Consensus 232 i~~a~~~g~~DNiT~ilv~~~~~~~ 256 (262)
T COG0631 232 IELALEGGGPDNITVVLVRLNGEGE 256 (262)
T ss_pred HHHHHhcCCCCceEEEEEEeecccc
Confidence 9999999999999999999987753
No 7
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=2.7e-38 Score=298.92 Aligned_cols=242 Identities=40% Similarity=0.622 Sum_probs=210.9
Q ss_pred eEEEEeecCCCCCCCceEEEecccCCCCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHhhcCCC-chhHHHHHHHHHHH
Q 015708 147 DFLLACKRGRREVMEDGYGFMLDIHGDPKQAFFTVIDGHGGRAAAEYVAGNLGRNIVKELGNVGD-EGIQLEQAMRVGYQ 225 (402)
Q Consensus 147 ~~~~~s~~G~R~~nEDa~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~~~-~~~~~~~al~~a~~ 225 (402)
.++..+..|.|..|||++.+...... .+..+|+|||||||+..+++|++.+++.+.+.+..... ....+...|+++|.
T Consensus 2 ~~~~~~~~g~r~~neD~~~~~~~~~~-~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 80 (254)
T cd00143 2 SAGVSDKGGDRKTNEDAVVIKPNLNN-EDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKAFL 80 (254)
T ss_pred ceeeecCCCCCCCCcceEEEeccCCC-CCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 35677888889999999988654211 25799999999999999999999999999988765421 14567888999999
Q ss_pred HHHHHHHhcC------CCCCccEEEEEEeCCeEEEEEECCeeEEEEeCCeeeeecccCCCCcHHHhhhhhhcCceeeccC
Q 015708 226 VTDKEFLSQG------VTSGACTASVLLKDSELHVANAGDCRVVLSRNGVADSLTKDHRLSREDERSRIENAGAYVHFCN 299 (402)
Q Consensus 226 ~~~~~~~~~~------~~~GtTav~ali~~~~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~~~ 299 (402)
++++.+.... ..+|||++++++.+++++++|+||||+|++++++++++|.||++.++.++.||...++.....
T Consensus 81 ~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~~- 159 (254)
T cd00143 81 RADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVSNG- 159 (254)
T ss_pred HHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEEeC-
Confidence 9999987653 578999999999999999999999999999999999999999999999999999999875421
Q ss_pred CcccccCceeccccccCccccccccccceeeEEEe-cCCCeEEEEEccccCCCCCHHHHHHHHHcCC---CHHHHHHHHH
Q 015708 300 GAWRVQGSLAVSRAIGDLHLKEWIISEPETKRLSL-TSDCEFLIMASDGLWDKVNAQEAVDVVSRNK---SSMESCKNLI 375 (402)
Q Consensus 300 g~~rv~g~l~vsralGd~~~k~~v~~~Pdi~~~~l-~~~~d~LILaSDGlwd~ls~~ei~~iv~~~~---~~~~aa~~Lv 375 (402)
+..+...+||+||+..+|+.+.++|++....+ .++ |+||||||||||+++++++.+++.... ++.++|+.|+
T Consensus 160 ---~~~~~~~~t~~lG~~~~~~~~~~~~~~~~~~l~~~~-d~ill~SDG~~~~l~~~~i~~~~~~~~~~~~~~~~a~~l~ 235 (254)
T cd00143 160 ---RVPGVLAVTRALGDFDLKPGVSAEPDVTVVKLTEDD-DFLILASDGLWDVLSNQEAVDIVRSELAKEDLQEAAQELV 235 (254)
T ss_pred ---EEcCceeeccccCCccccCCEEcCCeEEEEEeCCCC-cEEEEECCCCeeccChHHHHHHHHHHhcccCHHHHHHHHH
Confidence 44556799999999988887889999999999 665 999999999999999999999998766 7999999999
Q ss_pred HHHHhCCCCCCeEEEEEEc
Q 015708 376 DISSSRGNMDDITVMVINL 394 (402)
Q Consensus 376 ~~A~~rgs~DNiTvIVV~l 394 (402)
+.|..+++.||+|+||+++
T Consensus 236 ~~a~~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 236 DLALRRGSHDNITVVVVRL 254 (254)
T ss_pred HHHHhCCCCCCEEEEEEeC
Confidence 9999999999999999975
No 8
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=1e-37 Score=295.96 Aligned_cols=241 Identities=44% Similarity=0.679 Sum_probs=210.8
Q ss_pred CeeEEEEeecCCCCCCCceEEEecccCCCCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHH
Q 015708 145 GRDFLLACKRGRREVMEDGYGFMLDIHGDPKQAFFTVIDGHGGRAAAEYVAGNLGRNIVKELGNVGDEGIQLEQAMRVGY 224 (402)
Q Consensus 145 ~~~~~~~s~~G~R~~nEDa~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~~~~~~~~~~al~~a~ 224 (402)
+..++..+..|.|..|||++.+..... .+..+|+|||||||..+|+++++.+.+.+.+...........+.+.|++++
T Consensus 5 ~~~~~~~~~~~~r~~neD~~~~~~~~~--~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (255)
T smart00332 5 GLRYGLSSMQGVRKPMEDAHVITPDLS--DSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRKAF 82 (255)
T ss_pred ceeEEEecCCCCCCCCcceEEEeccCC--CCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHH
Confidence 355666778888999999998865422 467899999999999999999999999888766543222346888999999
Q ss_pred HHHHHHHHhcC------CCCCccEEEEEEeCCeEEEEEECCeeEEEEeCCeeeeecccCCCCcHHHhhhhhhcCceeecc
Q 015708 225 QVTDKEFLSQG------VTSGACTASVLLKDSELHVANAGDCRVVLSRNGVADSLTKDHRLSREDERSRIENAGAYVHFC 298 (402)
Q Consensus 225 ~~~~~~~~~~~------~~~GtTav~ali~~~~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~~ 298 (402)
.++++.+.... ..+|||++++++.+++++++|+||||+|++|++++.++|.||++.++.|..||...++.+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~~ 162 (255)
T smart00332 83 LKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVING 162 (255)
T ss_pred HHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEECC
Confidence 99999887653 457999999999999999999999999999999999999999999999999999999987654
Q ss_pred CCcccccCceeccccccCccccccccccceeeEEEe-cCCCeEEEEEccccCCCCCHHHHHHHHHcCC---CHHHHHHHH
Q 015708 299 NGAWRVQGSLAVSRAIGDLHLKEWIISEPETKRLSL-TSDCEFLIMASDGLWDKVNAQEAVDVVSRNK---SSMESCKNL 374 (402)
Q Consensus 299 ~g~~rv~g~l~vsralGd~~~k~~v~~~Pdi~~~~l-~~~~d~LILaSDGlwd~ls~~ei~~iv~~~~---~~~~aa~~L 374 (402)
+..+.+.+||++|+...|+.+..+|++...++ .++ |+||||||||||+++++++.+++.... ++.++|+.|
T Consensus 163 ----~~~~~~~lt~~~g~~~~~~~i~~~p~~~~~~~~~~~-d~ill~SDGv~~~l~~~~i~~~~~~~~~~~~~~~~~~~l 237 (255)
T smart00332 163 ----RVNGVLALSRAIGDFFLKPYVSAEPDVTVVELTEKD-DFLILASDGLWDVLSNQEVVDIVRKHLSKSDPEEAAKRL 237 (255)
T ss_pred ----eECCeEecccccCCHhhcCCeEeeeEEEEEEecCCC-cEEEEECCccccCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 66677899999999999999999999999997 665 999999999999999999999997765 599999999
Q ss_pred HHHHHhCCCCCCeEEEEE
Q 015708 375 IDISSSRGNMDDITVMVI 392 (402)
Q Consensus 375 v~~A~~rgs~DNiTvIVV 392 (402)
++.|..++..||+|+|||
T Consensus 238 ~~~a~~~~~~Dn~T~ivv 255 (255)
T smart00332 238 IDLALARGSKDNITVIVV 255 (255)
T ss_pred HHHHHHcCCCCCeEEEEC
Confidence 999999999999999985
No 9
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-39 Score=307.78 Aligned_cols=157 Identities=41% Similarity=0.635 Sum_probs=145.3
Q ss_pred CCCccEEEEEEeCCeEEEEEECCeeEEEEeCCeeeeecccCCCCcHHHhhhhhhcCceeeccCCcccccCceeccccccC
Q 015708 237 TSGACTASVLLKDSELHVANAGDCRVVLSRNGVADSLTKDHRLSREDERSRIENAGAYVHFCNGAWRVQGSLAVSRAIGD 316 (402)
Q Consensus 237 ~~GtTav~ali~~~~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~~~g~~rv~g~l~vsralGd 316 (402)
.+||||++|++.+++|+|||.||||+|++|+|+++-++.||+|..+.|..||.++||.|... | ||+|.|+++|||||
T Consensus 329 DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtlD-G--RVNGGLNLSRA~GD 405 (542)
T KOG0699|consen 329 DSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTLD-G--RVNGGLNLSRAFGD 405 (542)
T ss_pred CCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEeec-c--eecCccchhhhhhh
Confidence 38999999999999999999999999999999999999999999999999999999999864 3 99999999999999
Q ss_pred ccccc---------cccccceeeEEEecCCCeEEEEEccccCCCCCHHHHHHHHHc----CCCHHHHHHHHHHHHHhCC-
Q 015708 317 LHLKE---------WIISEPETKRLSLTSDCEFLIMASDGLWDKVNAQEAVDVVSR----NKSSMESCKNLIDISSSRG- 382 (402)
Q Consensus 317 ~~~k~---------~v~~~Pdi~~~~l~~~~d~LILaSDGlwd~ls~~ei~~iv~~----~~~~~~aa~~Lv~~A~~rg- 382 (402)
..+|. .+++-|+|+.+.|++.++|+|+||||+|++++.||++++|+. ......+|+.|.+.++.-.
T Consensus 406 HaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~iceeL~D~CLAp~T 485 (542)
T KOG0699|consen 406 HAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICEELCDACLAPST 485 (542)
T ss_pred hhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHHHHHHhhcCCCC
Confidence 99983 599999999999999999999999999999999999999953 4567799999999998742
Q ss_pred -----CCCCeEEEEEEcCC
Q 015708 383 -----NMDDITVMVINLDK 396 (402)
Q Consensus 383 -----s~DNiTvIVV~l~~ 396 (402)
..||+|||++.|++
T Consensus 486 ~GDGTGCDNMT~ii~~Fkr 504 (542)
T KOG0699|consen 486 DGDGTGCDNMTVIITTFKR 504 (542)
T ss_pred CCCCcCCCcceEEEEEecc
Confidence 58999999999975
No 10
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=2.9e-38 Score=333.46 Aligned_cols=244 Identities=22% Similarity=0.342 Sum_probs=191.4
Q ss_pred CeeEEEEeecCC-CCCCCceEEEecccC------C--CCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHhhcCCCchhH
Q 015708 145 GRDFLLACKRGR-REVMEDGYGFMLDIH------G--DPKQAFFTVIDGHGGRAAAEYVAGNLGRNIVKELGNVGDEGIQ 215 (402)
Q Consensus 145 ~~~~~~~s~~G~-R~~nEDa~~v~~~~~------~--~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~~~~~~~ 215 (402)
...+++.|++|. |..|||++.+...+. + .....+|+|||||||+.+|+.||+.+++.+.+.+.........
T Consensus 374 ~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~~~ 453 (645)
T PRK14559 374 SLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDELP 453 (645)
T ss_pred eEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhccccc
Confidence 356889999997 899999987654211 1 0235799999999999999999999999988776532211112
Q ss_pred HHHHHHHHHHHHHHHHHhcC--------CCCCccEEEEEEeCCeEEEEEECCeeEEEE-eCCeeeeecccCCCCcHHHhh
Q 015708 216 LEQAMRVGYQVTDKEFLSQG--------VTSGACTASVLLKDSELHVANAGDCRVVLS-RNGVADSLTKDHRLSREDERS 286 (402)
Q Consensus 216 ~~~al~~a~~~~~~~~~~~~--------~~~GtTav~ali~~~~l~vanvGDSRa~l~-r~g~~~~LT~DH~~~~~~E~~ 286 (402)
..+.+++++..+++.+.+.+ ..+|||++++++.++++|++||||||+|++ |+|++++||+||++.+...+.
T Consensus 454 ~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~~lv~~ 533 (645)
T PRK14559 454 DEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQREIQR 533 (645)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHHHHHHHh
Confidence 35678888888888886532 368999999999999999999999999998 578999999999998765444
Q ss_pred hhhhcCceeeccCCcccccCceeccccccCccccccccccceeeEEEecCCCeEEEEEccccCCC--CCH---HHHHHHH
Q 015708 287 RIENAGAYVHFCNGAWRVQGSLAVSRAIGDLHLKEWIISEPETKRLSLTSDCEFLIMASDGLWDK--VNA---QEAVDVV 361 (402)
Q Consensus 287 RI~~~gg~v~~~~g~~rv~g~l~vsralGd~~~k~~v~~~Pdi~~~~l~~~~d~LILaSDGlwd~--ls~---~ei~~iv 361 (402)
.+....++.++ +.+.+||+||+...+. .+|++..+.+.++ |+||||||||||+ +.. +++..++
T Consensus 534 Gi~~~~a~~~p--------~~~~LTrALG~~~~~~---l~Pdi~~~~L~~g-D~lLLCSDGL~D~~~ve~~~~~~l~~il 601 (645)
T PRK14559 534 GVEPQIAYARP--------DAYQLTQALGPRDNSA---IQPDIQFLEIEED-TLLLLCSDGLSDNDLLETHWQTHLLPLL 601 (645)
T ss_pred CCCHHHHhcCc--------ccceeeeccCCCCCCc---ccceEEEEEcCCC-CEEEEECCCCCCCcccchHHHHHHHHHH
Confidence 44433333333 2358999999875432 4899999999986 9999999999994 554 3456677
Q ss_pred HcCCCHHHHHHHHHHHHHhCCCCCCeEEEEEEcCCCCCC
Q 015708 362 SRNKSSMESCKNLIDISSSRGNMDDITVMVINLDKFVPK 400 (402)
Q Consensus 362 ~~~~~~~~aa~~Lv~~A~~rgs~DNiTvIVV~l~~~~~~ 400 (402)
....++.++|+.|++.|+.+|+.||||+|||+++.-+..
T Consensus 602 ~~~~~l~~aa~~Li~~Al~~gg~DNITvIvV~l~~~p~~ 640 (645)
T PRK14559 602 SSSANLDQGLNKLIDLANQYNGHDNITAILVRLKVRPQL 640 (645)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCCCcEEEEEEEeccCCCC
Confidence 777789999999999999999999999999999765544
No 11
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=6.6e-38 Score=307.01 Aligned_cols=223 Identities=34% Similarity=0.521 Sum_probs=186.1
Q ss_pred CCCCCceEEEecccCCCCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHhhc--------CCCc----------------
Q 015708 157 REVMEDGYGFMLDIHGDPKQAFFTVIDGHGGRAAAEYVAGNLGRNIVKELGN--------VGDE---------------- 212 (402)
Q Consensus 157 R~~nEDa~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~--------~~~~---------------- 212 (402)
-..-||...+.... .+++.|+||||||||..++++.+++|..++..++.. ...+
T Consensus 82 ~~~~edrv~~~~s~--~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~ 159 (390)
T KOG0700|consen 82 GKAEEDRVSVAVSE--ENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQL 159 (390)
T ss_pred CCcccCcceeeeec--cCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcc
Confidence 34467777665554 358999999999999999999999999998855432 1111
Q ss_pred ------hhHHHHHHHHHHHHHHHHHHhcC----------CCCCccEEEEEEeCCeEEEEEECCeeEEEEe---CC---ee
Q 015708 213 ------GIQLEQAMRVGYQVTDKEFLSQG----------VTSGACTASVLLKDSELHVANAGDCRVVLSR---NG---VA 270 (402)
Q Consensus 213 ------~~~~~~al~~a~~~~~~~~~~~~----------~~~GtTav~ali~~~~l~vanvGDSRa~l~r---~g---~~ 270 (402)
...+.++|.+||.++++.|.... ..+|+||+++++.++.|||||+|||||+|.+ +| .+
T Consensus 160 ~~~~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A 239 (390)
T KOG0700|consen 160 SSADQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVA 239 (390)
T ss_pred cccCccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEE
Confidence 36789999999999999997532 5689999999999999999999999999975 23 58
Q ss_pred eeecccCCCCcHHHhhhhhhcCc---eeeccCCcccccCceeccccccCcccc---------------------cccccc
Q 015708 271 DSLTKDHRLSREDERSRIENAGA---YVHFCNGAWRVQGSLAVSRAIGDLHLK---------------------EWIISE 326 (402)
Q Consensus 271 ~~LT~DH~~~~~~E~~RI~~~gg---~v~~~~g~~rv~g~l~vsralGd~~~k---------------------~~v~~~ 326 (402)
+|||.||+..+++|+.||....- .+... +-|||.|.|.+||||||..+| ||++++
T Consensus 240 ~qLS~dHn~~ne~Ev~Rir~eHPdd~~~vv~-~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~Pyltae 318 (390)
T KOG0700|consen 240 VQLSTDHNASNEDEVRRIRSEHPDDPHIVVN-KHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAE 318 (390)
T ss_pred EecChhhccccHHHHHHHHHhCCCCcceEee-ccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceecc
Confidence 99999999999999999976643 22222 239999999999999999988 579999
Q ss_pred ceeeEEEecCCCeEEEEEccccCCCCCHHHHHHHHHcC----CCHHHHHHHHHHHHHhCC
Q 015708 327 PETKRLSLTSDCEFLIMASDGLWDKVNAQEAVDVVSRN----KSSMESCKNLIDISSSRG 382 (402)
Q Consensus 327 Pdi~~~~l~~~~d~LILaSDGlwd~ls~~ei~~iv~~~----~~~~~aa~~Lv~~A~~rg 382 (402)
|+++.++|++.|.|||||||||||+++++|++++|... .....+|+.|++.|+.+.
T Consensus 319 P~i~~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~a 378 (390)
T KOG0700|consen 319 PSITHHKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALGRA 378 (390)
T ss_pred ceEEEEEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999663 334578999999998654
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.96 E-value=3.8e-28 Score=231.30 Aligned_cols=221 Identities=30% Similarity=0.448 Sum_probs=177.1
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHHHHHHHHhhcC------------------------------------CCchhHHH
Q 015708 174 PKQAFFTVIDGHGGRAAAEYVAGNLGRNIVKELGNV------------------------------------GDEGIQLE 217 (402)
Q Consensus 174 ~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~------------------------------------~~~~~~~~ 217 (402)
.+..+|.+||||.|..+|-.|++.+++.+.+.+... .....-+.
T Consensus 142 ~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LVi 221 (493)
T KOG1323|consen 142 ADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHLVI 221 (493)
T ss_pred CcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHhhH
Confidence 567999999999999999999999999887766411 11145578
Q ss_pred HHHHHHHHHHHHHHHhcC----CCCCccEEEEEEeCCeEEEEEECCeeEEEEeCCeeeeecccCCCCcHHHhhhhhhcC-
Q 015708 218 QAMRVGYQVTDKEFLSQG----VTSGACTASVLLKDSELHVANAGDCRVVLSRNGVADSLTKDHRLSREDERSRIENAG- 292 (402)
Q Consensus 218 ~al~~a~~~~~~~~~~~~----~~~GtTav~ali~~~~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~E~~RI~~~g- 292 (402)
.+|..||+.+|+.+.... ..+|||+++++.--+++|+||+|||||+++|++++++|+++.+| +.||+|++...
T Consensus 222 GAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTP--etERqRlQ~Laf 299 (493)
T KOG1323|consen 222 GALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTP--ETERQRLQELAF 299 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCc--HHHHHHHHHHhh
Confidence 899999999999887543 67899999999999999999999999999999999999999998 55677765432
Q ss_pred -------ce-----------------------------eec--------------cCCcccccCceeccccccCcccc--
Q 015708 293 -------AY-----------------------------VHF--------------CNGAWRVQGSLAVSRAIGDLHLK-- 320 (402)
Q Consensus 293 -------g~-----------------------------v~~--------------~~g~~rv~g~l~vsralGd~~~k-- 320 (402)
+. ... .....|+.+.+.|||.+||.++|
T Consensus 300 ~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~Lkv~ 379 (493)
T KOG1323|consen 300 RNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHHLKVV 379 (493)
T ss_pred cChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcceeeee
Confidence 10 000 01134677899999999998875
Q ss_pred -------ccccccceeeEEEecC----CCeEEEEEccccCCCCCHHHHHHHHHcC------CCHH---HHHHHHHHHHHh
Q 015708 321 -------EWIISEPETKRLSLTS----DCEFLIMASDGLWDKVNAQEAVDVVSRN------KSSM---ESCKNLIDISSS 380 (402)
Q Consensus 321 -------~~v~~~Pdi~~~~l~~----~~d~LILaSDGlwd~ls~~ei~~iv~~~------~~~~---~aa~~Lv~~A~~ 380 (402)
|++++.|++..+++.+ .||++|||||||||+++++|+..+++.. .+|. .+|+.|+..|..
T Consensus 380 dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp~RYt~aaqdlva~arg 459 (493)
T KOG1323|consen 380 DSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADPSRYTQAAQDLVAAARG 459 (493)
T ss_pred cCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhcC
Confidence 7899999999998875 3589999999999999999999999642 2333 678888887742
Q ss_pred -------------CCCCCCeEEEEEEcCC
Q 015708 381 -------------RGNMDDITVMVINLDK 396 (402)
Q Consensus 381 -------------rgs~DNiTvIVV~l~~ 396 (402)
.|+.|||||.||.|..
T Consensus 460 ~~k~rgWr~~n~~lgSgDDIsVfVIPL~~ 488 (493)
T KOG1323|consen 460 QQKDRGWRMNNGGLGSGDDISVFVIPLKY 488 (493)
T ss_pred ccCCCceeccCCCcCCCCceEEEEEeccC
Confidence 2578999999999853
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.90 E-value=1.3e-22 Score=193.58 Aligned_cols=203 Identities=20% Similarity=0.285 Sum_probs=148.3
Q ss_pred CCceEEEecccCCCCCceEEEEEcCCCchhH----HHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcC
Q 015708 160 MEDGYGFMLDIHGDPKQAFFTVIDGHGGRAA----AEYVAGNLGRNIVKELGNVGDEGIQLEQAMRVGYQVTDKEFLSQG 235 (402)
Q Consensus 160 nEDa~~v~~~~~~~~~~~lfgV~DGhGG~~~----a~~as~~l~~~l~~~~~~~~~~~~~~~~al~~a~~~~~~~~~~~~ 235 (402)
-||++++..+ ....+.|||||+|||.- +...|+.|++...+..........++...|.+||.++-..- .-
T Consensus 91 GEDa~Fvss~----~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l~~~~--~~ 164 (330)
T KOG1379|consen 91 GEDAWFVSSN----PHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVNLLEKAYAELKSQK--VP 164 (330)
T ss_pred CCcceeeccC----cccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHhhcC--CC
Confidence 7899998554 46789999999999962 33445666666666665544445678999999998776520 01
Q ss_pred CCCCccEEEEEEe--CCeEEEEEECCeeEEEEeCCeeeeecccCCC--CcHHHhhhhhhcCceeeccCCcccccCceecc
Q 015708 236 VTSGACTASVLLK--DSELHVANAGDCRVVLSRNGVADSLTKDHRL--SREDERSRIENAGAYVHFCNGAWRVQGSLAVS 311 (402)
Q Consensus 236 ~~~GtTav~ali~--~~~l~vanvGDSRa~l~r~g~~~~LT~DH~~--~~~~E~~RI~~~gg~v~~~~g~~rv~g~l~vs 311 (402)
.-+++||+++++. +++||+||+|||-..++|+|+++.-|..+.. +-|.... . +.-...
T Consensus 165 ~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~FN~PyQLs--------~----------~p~~~~ 226 (330)
T KOG1379|consen 165 IVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHYFNTPYQLS--------S----------PPEGYS 226 (330)
T ss_pred CCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheeccCCceeec--------c----------CCcccc
Confidence 2367788777776 8899999999999999999999888775543 1111100 0 000013
Q ss_pred ccccCccccccccccceeeEEEecCCCeEEEEEccccCCCCCHHHHHHHHHc-----CCCHHHHHHHHHHHHHhC-----
Q 015708 312 RAIGDLHLKEWIISEPETKRLSLTSDCEFLIMASDGLWDKVNAQEAVDVVSR-----NKSSMESCKNLIDISSSR----- 381 (402)
Q Consensus 312 ralGd~~~k~~v~~~Pdi~~~~l~~~~d~LILaSDGlwd~ls~~ei~~iv~~-----~~~~~~aa~~Lv~~A~~r----- 381 (402)
.+++|.. -..+...+.+.++ |.||+|||||||++.+++|++++.. ..+++..|+.+++.|.+.
T Consensus 227 ~~~~d~p------~~ad~~~~~v~~G-DvIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~Ar~ls~d~~ 299 (330)
T KOG1379|consen 227 SYISDVP------DSADVTSFDVQKG-DVIILATDGLFDNLPEKEILSILKGLDARGNLDLQVTAQKIAEKARELSRDPK 299 (330)
T ss_pred ccccCCc------cccceEEEeccCC-CEEEEecccccccccHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhccCcC
Confidence 3355544 3567889999998 9999999999999999999999943 467889999999888642
Q ss_pred ------------------CCCCCeEEEEEE
Q 015708 382 ------------------GNMDDITVMVIN 393 (402)
Q Consensus 382 ------------------gs~DNiTvIVV~ 393 (402)
|..|||||||..
T Consensus 300 ~~SPFA~~Ar~~g~~~~gGK~DdITvvls~ 329 (330)
T KOG1379|consen 300 FQSPFAQAAREHGFKAYGGKPDDITVVLSS 329 (330)
T ss_pred cCChHHHHHHHhCcccCCCCcccEEEEEec
Confidence 459999999975
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=1.9e-22 Score=213.86 Aligned_cols=247 Identities=24% Similarity=0.391 Sum_probs=218.0
Q ss_pred eeCeeEEEEeecCCCCCCCceEEEecccCCCCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHH
Q 015708 143 VEGRDFLLACKRGRREVMEDGYGFMLDIHGDPKQAFFTVIDGHGGRAAAEYVAGNLGRNIVKELGNVGDEGIQLEQAMRV 222 (402)
Q Consensus 143 ~~~~~~~~~s~~G~R~~nEDa~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~~~~~~~~~~al~~ 222 (402)
.-.+.||++-..|.|.+.--+...+.+|.. .....||.+||-+......+....+.+.+.+++...+.+ .+.|+.
T Consensus 519 ~~~~t~Gv~~~~gqrnk~c~~~~~v~nf~~-~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~~e----t~~mr~ 593 (1081)
T KOG0618|consen 519 AFLWTYGVAGVSGQRNKVCSRAVWVENFFL-NPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYGNE----TEQMRN 593 (1081)
T ss_pred eeheeeccchhcccccchhhhhhhhhhccc-CCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhccCh----HHHHHH
Confidence 345678999999998886666555555543 567999999999999999999999999999998876543 344999
Q ss_pred HHHHHHHHHHhcCCCCCccEEEEEEeCC--------eEEEEEECCeeEEEEeCCeeeeecccCCC-CcHHHhhhhhhcCc
Q 015708 223 GYQVTDKEFLSQGVTSGACTASVLLKDS--------ELHVANAGDCRVVLSRNGVADSLTKDHRL-SREDERSRIENAGA 293 (402)
Q Consensus 223 a~~~~~~~~~~~~~~~GtTav~ali~~~--------~l~vanvGDSRa~l~r~g~~~~LT~DH~~-~~~~E~~RI~~~gg 293 (402)
+|...++++...+..-|..++.+.+..+ ++++||+|+|.++++++|+..++|+-... ..++|.+||...+|
T Consensus 594 ~fl~~~rklg~~g~~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~RI~~~~g 673 (1081)
T KOG0618|consen 594 TFLRLNRKLGEEGQVLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKRIVDSKG 673 (1081)
T ss_pred HHHHHhhhhhhhhccccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHHHHHHhcC
Confidence 9999999998888888888888888654 58999999999999999999999887644 47799999999999
Q ss_pred eeeccCCcccccCceeccccccCccccccccccceeeEEEecCCCeEEEEEccccCCCCCHHHHHHHHHcCCCHHHHHHH
Q 015708 294 YVHFCNGAWRVQGSLAVSRAIGDLHLKEWIISEPETKRLSLTSDCEFLIMASDGLWDKVNAQEAVDVVSRNKSSMESCKN 373 (402)
Q Consensus 294 ~v~~~~g~~rv~g~l~vsralGd~~~k~~v~~~Pdi~~~~l~~~~d~LILaSDGlwd~ls~~ei~~iv~~~~~~~~aa~~ 373 (402)
++.. +| +++|.-..||++|-....|+|.+.|++..+.|++.|+|||+++-++|++++-+++++.+++..+|-.||++
T Consensus 674 ~i~e-d~--k~ngvt~~tR~iG~~~l~P~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vRn~~dpL~AAkK 750 (1081)
T KOG0618|consen 674 FITE-DN--KLNGVTSSTRAIGPFSLFPHVLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVRNVEDPLLAAKK 750 (1081)
T ss_pred eecC-CC--eeeceeeeeeecccccccccccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHHhcCCchHHHHHH
Confidence 9986 33 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCeEEEEEEcCCC
Q 015708 374 LIDISSSRGNMDDITVMVINLDKF 397 (402)
Q Consensus 374 Lv~~A~~rgs~DNiTvIVV~l~~~ 397 (402)
|++.|...|..||++|+||++..-
T Consensus 751 L~d~AqSYgc~~nv~vlVv~l~~~ 774 (1081)
T KOG0618|consen 751 LCDLAQSYGCAENVSVLVVRLNHL 774 (1081)
T ss_pred HHHHHHhcccccCeeEEEEEeecc
Confidence 999999999999999999999654
No 15
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.83 E-value=1.4e-19 Score=167.76 Aligned_cols=178 Identities=20% Similarity=0.299 Sum_probs=108.3
Q ss_pred EeecCCCCCCCceEEEecccCCCCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHhhcCCCchh-H-HHHHHHHHHHHHH
Q 015708 151 ACKRGRREVMEDGYGFMLDIHGDPKQAFFTVIDGHGGRAAAEYVAGNLGRNIVKELGNVGDEGI-Q-LEQAMRVGYQVTD 228 (402)
Q Consensus 151 ~s~~G~R~~nEDa~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~~~~~~-~-~~~al~~a~~~~~ 228 (402)
.+++|.|..|||++.+... .+..+++|+||+||...++.+|+.+++.+.+.+........ . ....++.+...+.
T Consensus 3 ~sh~~~~~~nqD~~~~~~~----~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 78 (212)
T PF13672_consen 3 RSHRGRGAPNQDAFGIRTD----DDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEIL 78 (212)
T ss_dssp ----TTSSS--EEEEEE-T----CCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCEEeeeC----CCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 5778899999999986442 35577799999999999999999999999988886655422 1 2233333333332
Q ss_pred HHH---------HhcCCCCCccEEEEEEeCCeEEEEEECCeeEE-EEeCCeeeeecccCCCCcHHHhhhhhhcCceeecc
Q 015708 229 KEF---------LSQGVTSGACTASVLLKDSELHVANAGDCRVV-LSRNGVADSLTKDHRLSREDERSRIENAGAYVHFC 298 (402)
Q Consensus 229 ~~~---------~~~~~~~GtTav~ali~~~~l~vanvGDSRa~-l~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~~ 298 (402)
..+ .......+||++++++.+++++++|+||||+| +.++|++..++.||+.... .
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~~~~--~------------- 143 (212)
T PF13672_consen 79 SIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSGEYP--N------------- 143 (212)
T ss_dssp HHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BHHHH--H-------------
T ss_pred HHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccchhh--h-------------
Confidence 211 12226678999999999999999999999996 4689999999999873111 0
Q ss_pred CCcccccCceeccccccCccccccccccceeeEEEecCCCeEEEEEccccCCCCCHHH-HHHHHHc
Q 015708 299 NGAWRVQGSLAVSRAIGDLHLKEWIISEPETKRLSLTSDCEFLIMASDGLWDKVNAQE-AVDVVSR 363 (402)
Q Consensus 299 ~g~~rv~g~l~vsralGd~~~k~~v~~~Pdi~~~~l~~~~d~LILaSDGlwd~ls~~e-i~~iv~~ 363 (402)
.++.+..... ....++..+++.++ +.|+|||||+|+.+.+.+ +..++..
T Consensus 144 -----------~~~~~~~~~~----~~~~~~~~~~~~~~-d~ilL~SDG~~~~l~~~~~~~~~l~~ 193 (212)
T PF13672_consen 144 -----------QTRSLTGDDP----EPDVQYGSIPLEEG-DVILLCSDGVWDNLRSYEDLEQFLKD 193 (212)
T ss_dssp -----------CTTSCCHHCC----CTETEEEEEE--TT--EEEEE-HHHHTTS-HHHHHHHH---
T ss_pred -----------hhhccCcccc----ccCCeEEEEEcCCC-CEEEEECcCccccCCCHHHHHHHhhh
Confidence 1222222211 12346667777887 999999999999998665 6666643
No 16
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.76 E-value=8.4e-17 Score=147.04 Aligned_cols=173 Identities=17% Similarity=0.154 Sum_probs=131.2
Q ss_pred CCCCCceEEEecccCCCCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhc-C
Q 015708 157 REVMEDGYGFMLDIHGDPKQAFFTVIDGHGGRAAAEYVAGNLGRNIVKELGNVGDEGIQLEQAMRVGYQVTDKEFLSQ-G 235 (402)
Q Consensus 157 R~~nEDa~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~~~~~~~~~~al~~a~~~~~~~~~~~-~ 235 (402)
.....|.|.+... +++..+++|+||||+...|.+++..+...+.+..... .. +...+.++++.+... .
T Consensus 14 ~~~~GD~~~~~~~---~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~----~~----~~~~l~~~n~~l~~~~~ 82 (193)
T smart00331 14 TQVGGDFYDVVKL---PEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEG----IS----LSQILERLNRAIYENGE 82 (193)
T ss_pred HhcCccEEEEEEe---CCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcC----CC----HHHHHHHHHHHHHhcCC
Confidence 4557788877553 3357999999999999999999999999888776432 12 334445556666554 3
Q ss_pred CCCCccEEEEEE--eCCeEEEEEECCeeEEEEe-CCeeeeecccCCCCcHHHhhhhhhcCceeeccCCcccccCceeccc
Q 015708 236 VTSGACTASVLL--KDSELHVANAGDCRVVLSR-NGVADSLTKDHRLSREDERSRIENAGAYVHFCNGAWRVQGSLAVSR 312 (402)
Q Consensus 236 ~~~GtTav~ali--~~~~l~vanvGDSRa~l~r-~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~~~g~~rv~g~l~vsr 312 (402)
...|+|++++.+ ..++++++|+||+|+|+++ ++..++++.+. ++
T Consensus 83 ~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~---------------------------------~~ 129 (193)
T smart00331 83 DGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDDL---------------------------------GA 129 (193)
T ss_pred CCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCCC---------------------------------Cc
Confidence 567999999988 5789999999999999998 56555555541 33
Q ss_pred cccCccccccccccceeeEEEecCCCeEEEEEccccCCCCCHHHHHHHHHcC--CCHHHHHHHHHHHHH
Q 015708 313 AIGDLHLKEWIISEPETKRLSLTSDCEFLIMASDGLWDKVNAQEAVDVVSRN--KSSMESCKNLIDISS 379 (402)
Q Consensus 313 alGd~~~k~~v~~~Pdi~~~~l~~~~d~LILaSDGlwd~ls~~ei~~iv~~~--~~~~~aa~~Lv~~A~ 379 (402)
.+|.... .+++...+.+.++ |.|+|+|||+||.++.+++.+++... .++.+.++++.+.+.
T Consensus 130 ~lG~~~~-----~~~~~~~~~l~~g-d~l~l~TDGl~e~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 130 PLGLEPD-----VEVDVRELTLEPG-DLLLLYTDGLTEARNPERLEELLEELLGSPPAEIAQRILEELL 192 (193)
T ss_pred eeeeCCC-----CcceeEEEeeCCC-CEEEEECCCccccCChHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 4665432 3567888899998 99999999999999999999999764 468888888887754
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.63 E-value=2.7e-14 Score=155.83 Aligned_cols=188 Identities=18% Similarity=0.188 Sum_probs=137.8
Q ss_pred CCCCCCceEEEecccCCCCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhc-
Q 015708 156 RREVMEDGYGFMLDIHGDPKQAFFTVIDGHGGRAAAEYVAGNLGRNIVKELGNVGDEGIQLEQAMRVGYQVTDKEFLSQ- 234 (402)
Q Consensus 156 ~R~~nEDa~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~~~~~~~~~~al~~a~~~~~~~~~~~- 234 (402)
.+..+.|.|.+... +++...++|+||+|+...|..++..+.+.+.+...... ++.+ +...+|..+...
T Consensus 563 g~~vsGD~y~~~~l---~~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~----~~~~----ai~~lN~~L~~~~ 631 (764)
T TIGR02865 563 GELVSGDSYSFGKL---SAGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESGF----DREV----AIKTVNSILSLRS 631 (764)
T ss_pred CCcccCceEEEEEE---CCCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCC----CHHH----HHHHHHHHHHhCC
Confidence 36679999977553 24568999999999888888888888888776654322 2233 334444444322
Q ss_pred CCCCCccEEEEEEe--CCeEEEEEECCeeEEEEeCCeeeeecccCCCCcHHHhhhhhhcCceeeccCCcccccCceeccc
Q 015708 235 GVTSGACTASVLLK--DSELHVANAGDCRVVLSRNGVADSLTKDHRLSREDERSRIENAGAYVHFCNGAWRVQGSLAVSR 312 (402)
Q Consensus 235 ~~~~GtTav~ali~--~~~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~~~g~~rv~g~l~vsr 312 (402)
.....+|+.+++++ .+++.++|+|+++.|+.|++.+..++..+.|
T Consensus 632 ~~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lP--------------------------------- 678 (764)
T TIGR02865 632 TDEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLP--------------------------------- 678 (764)
T ss_pred CCCeEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCce---------------------------------
Confidence 23457898888885 6889999999999999999988877654332
Q ss_pred cccCccccccccccceeeEEEecCCCeEEEEEccccCCCCCHHH-----HHHHHHc--CCCHHHHHHHHHHHHHhCC---
Q 015708 313 AIGDLHLKEWIISEPETKRLSLTSDCEFLIMASDGLWDKVNAQE-----AVDVVSR--NKSSMESCKNLIDISSSRG--- 382 (402)
Q Consensus 313 alGd~~~k~~v~~~Pdi~~~~l~~~~d~LILaSDGlwd~ls~~e-----i~~iv~~--~~~~~~aa~~Lv~~A~~rg--- 382 (402)
+|-.. ..+++..+.++.+| |+|+|+|||++|..++++ +.+++.. ..+|++.++.|++.+.+..
T Consensus 679 -lGil~-----~~~~~~~~~~L~~G-D~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~~~~~p~ela~~Il~~a~~~~~~~ 751 (764)
T TIGR02865 679 -IGILD-----EVDVELVRKKLKNG-DLIVMVSDGVLEGEKEVEGKVLWLVRKLKETNTNDPEEIAEYLLEKAKELRSGK 751 (764)
T ss_pred -eEecc-----CCccceEEEEeCCC-CEEEEECCCCCcCCcccccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCC
Confidence 22211 13667788899998 999999999999876533 6667754 4589999999999998643
Q ss_pred CCCCeEEEEEEc
Q 015708 383 NMDDITVMVINL 394 (402)
Q Consensus 383 s~DNiTvIVV~l 394 (402)
..||+|++++++
T Consensus 752 ~~DD~Tvlvirv 763 (764)
T TIGR02865 752 IKDDMTVIVAKV 763 (764)
T ss_pred CCCCeEEEEEEe
Confidence 489999999986
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.55 E-value=1.4e-12 Score=118.65 Aligned_cols=176 Identities=21% Similarity=0.277 Sum_probs=118.1
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCccEEEEEEe--CCe
Q 015708 174 PKQAFFTVIDGHGGRAAAEYVAGNLGRNIVKELGNVGDEGIQLEQAMRVGYQVTDKEFLSQGVTSGACTASVLLK--DSE 251 (402)
Q Consensus 174 ~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~~~~~~~~~~al~~a~~~~~~~~~~~~~~~GtTav~ali~--~~~ 251 (402)
++..+++|+|+.|..-.|.+.+..+...+........ .+.+.+......+...+... ...+|++++.++ .++
T Consensus 2 ~~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~----~p~~~l~~ln~~l~~~~~~~--~~~~t~~~~~~d~~~~~ 75 (193)
T PF07228_consen 2 DGRYFIIVGDVSGHGVSAALLSAALASAIRELLDEGL----DPEELLEALNRRLYRDLKGD--NRYATACYAIIDPETGT 75 (193)
T ss_dssp TTEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTT----SHHHHHHHHHHHHHHHTTTT--STTEEEEEEEEETTTTE
T ss_pred CCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHhhhc--cccceEEEEEecccceE
Confidence 3578999999999777777778778777777764422 24444443333332222211 267788888775 567
Q ss_pred EEEEEECCeeEEEEeCC--eeeeecccCCCCcHHHhhhhhhcCceeeccCCcccccCceeccccccCcccccccccccee
Q 015708 252 LHVANAGDCRVVLSRNG--VADSLTKDHRLSREDERSRIENAGAYVHFCNGAWRVQGSLAVSRAIGDLHLKEWIISEPET 329 (402)
Q Consensus 252 l~vanvGDSRa~l~r~g--~~~~LT~DH~~~~~~E~~RI~~~gg~v~~~~g~~rv~g~l~vsralGd~~~k~~v~~~Pdi 329 (402)
++++|+|++++++++++ ....+..... .+|-..- .++..
T Consensus 76 l~~~~aG~~~~l~~~~~~~~~~~~~~~~~----------------------------------~lG~~~~-----~~~~~ 116 (193)
T PF07228_consen 76 LTYANAGHPPPLLLRPGGREIEQLESEGP----------------------------------PLGIFED-----IDYQE 116 (193)
T ss_dssp EEEEEESSSEEEEEETTCTEEEEETCSSB----------------------------------BCSSSCT-----TCEEE
T ss_pred EEEeCCCCCCEEEEeccccceeecccCcc----------------------------------ceeeecc-----ccccc
Confidence 99999999999999983 3333322111 1444221 35667
Q ss_pred eEEEecCCCeEEEEEccccCCCCCHH-------HHHHHHH--cCCCHHHHHHHHHHHHHh---CCCCCCeEEEEEEcC
Q 015708 330 KRLSLTSDCEFLIMASDGLWDKVNAQ-------EAVDVVS--RNKSSMESCKNLIDISSS---RGNMDDITVMVINLD 395 (402)
Q Consensus 330 ~~~~l~~~~d~LILaSDGlwd~ls~~-------ei~~iv~--~~~~~~~aa~~Lv~~A~~---rgs~DNiTvIVV~l~ 395 (402)
.++.+.++ |.|+|+||||+|....+ ++.+++. ...++++.++.|++.+.. ....||+||++++++
T Consensus 117 ~~~~l~~g-d~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 117 QEIQLEPG-DRLLLYTDGLFEALNEDGEFFGEERLLELLDENRGLSPQEIIDALLEAIDRFGKGPLRDDITVLVIRRQ 193 (193)
T ss_dssp EEEE--TT-EEEEEECHHHCTTTCHHCHHCCCHHHHHHHHCHTTS-HHHHHHHHHHHHHHHTTSSTSS-EEEEEEEE-
T ss_pred eEEEeccc-cEEEEeCCChhhccCCccchhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEC
Confidence 78899998 99999999999998443 4456665 346789999999999987 347999999999875
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.44 E-value=3.1e-05 Score=78.19 Aligned_cols=188 Identities=17% Similarity=0.172 Sum_probs=115.9
Q ss_pred CCceEEEecccCCCCCceEEEEEcCCC-chhHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcC-CC
Q 015708 160 MEDGYGFMLDIHGDPKQAFFTVIDGHG-GRAAAEYVAGNLGRNIVKELGNVGDEGIQLEQAMRVGYQVTDKEFLSQG-VT 237 (402)
Q Consensus 160 nEDa~~v~~~~~~~~~~~lfgV~DGhG-G~~~a~~as~~l~~~l~~~~~~~~~~~~~~~~al~~a~~~~~~~~~~~~-~~ 237 (402)
.-|.|-+... +.+...++|.|..| |..+|-. ........+...... ..++.+.++ ++++.+.... ..
T Consensus 162 GGD~yd~~~~---~~~~~~i~I~DvsG~Gv~aal~--m~~~~~~~~~~~~~~--~~~p~~~l~----~~n~~~~~~~~~~ 230 (367)
T COG2208 162 GGDYYDFIQL---GEKRLRIGIGDVSGKGVPAALL--MLMPKLALRLLLESG--PLDPADVLE----TLNRVLKQNLEED 230 (367)
T ss_pred CCceEEEEEE---CCcEEEEEEEeccCCCHHHHHH--HHHHHHHHHHhhhcc--cCCHHHHHH----HHHHHHHhcccCC
Confidence 3366655432 23689999999999 5555444 334444444443321 112233222 2222222221 11
Q ss_pred CCccEEEEEEe--CCeEEEEEECCeeEEEEeCCeeeeecccCCCCcHHHhhhhhhcCceeeccCCcccccCceecccccc
Q 015708 238 SGACTASVLLK--DSELHVANAGDCRVVLSRNGVADSLTKDHRLSREDERSRIENAGAYVHFCNGAWRVQGSLAVSRAIG 315 (402)
Q Consensus 238 ~GtTav~ali~--~~~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~~~g~~rv~g~l~vsralG 315 (402)
.=+|...++++ .+++.++|+|---+++++.++......= .....++|
T Consensus 231 ~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~~~~~l-------------------------------~~~g~piG 279 (367)
T COG2208 231 MFVTLFLGVYDLDSGELTYSNAGHEPALILSADGEIEVEDL-------------------------------TALGLPIG 279 (367)
T ss_pred cEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCceeEEc-------------------------------cCCCceee
Confidence 44566666664 6789999999998888886532100000 02345566
Q ss_pred CccccccccccceeeEEEecCCCeEEEEEccccCC-------CCCHHHHHHHHH--cCCCHHHHHHHHHHHHHh----CC
Q 015708 316 DLHLKEWIISEPETKRLSLTSDCEFLIMASDGLWD-------KVNAQEAVDVVS--RNKSSMESCKNLIDISSS----RG 382 (402)
Q Consensus 316 d~~~k~~v~~~Pdi~~~~l~~~~d~LILaSDGlwd-------~ls~~ei~~iv~--~~~~~~~aa~~Lv~~A~~----rg 382 (402)
...- ..+.+....+.+| |.+++.|||+.+ .+..+...+++. ...++.++++.+.+...+ ..
T Consensus 280 ~~~~-----~~~~~~~~~l~~g-d~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~l~~~~~~~~ 353 (367)
T COG2208 280 LLPD-----YQYEVASLQLEPG-DLLVLYTDGVTEARNSDGEFFGLERLLKILGRLLGQPAEEILEAILESLEELQGDQI 353 (367)
T ss_pred ecCC-----ccchheeEEecCC-CEEEEEcCCeeeeecCCccEecHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCCcc
Confidence 5542 5677788899996 999999999999 566777777776 345778888777776654 33
Q ss_pred CCCCeEEEEEEcC
Q 015708 383 NMDDITVMVINLD 395 (402)
Q Consensus 383 s~DNiTvIVV~l~ 395 (402)
..||+|++++++.
T Consensus 354 ~~DDiTll~lk~~ 366 (367)
T COG2208 354 QDDDITLLVLKVK 366 (367)
T ss_pred ccCceEEEEEEec
Confidence 5788999999875
No 20
>PRK10693 response regulator of RpoS; Provisional
Probab=53.84 E-value=1e+02 Score=30.13 Aligned_cols=49 Identities=6% Similarity=-0.084 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcCCCCCccEEEEEEe--CCeEEEEEECCeeEEEEeCCee
Q 015708 222 VGYQVTDKEFLSQGVTSGACTASVLLK--DSELHVANAGDCRVVLSRNGVA 270 (402)
Q Consensus 222 ~a~~~~~~~~~~~~~~~GtTav~ali~--~~~l~vanvGDSRa~l~r~g~~ 270 (402)
+....+++.+.......-.|++.++++ .+++.+++.|-...++..++.+
T Consensus 209 ~~l~~lN~~l~~~~~~~~~t~~~~~~d~~~~~l~~~~AGhp~~~~~~~~~~ 259 (303)
T PRK10693 209 ALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQV 259 (303)
T ss_pred HHHHHHHHHHHhcCCCceeeEEEEEEEcCCCeEEEEeCCCCCEEecCCeEE
Confidence 344456666655433333677777775 4679999999999885444433
No 21
>PF05933 Fun_ATP-synt_8: Fungal ATP synthase protein 8 (A6L); InterPro: IPR009230 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit 8 found in the F0 complex of mitochondrial F-ATPases from fungi. This subunit appears to be an integral component of the stator stalk in yeast mitochondrial F-ATPases []. The stator stalk is anchored in the membrane, and acts to prevent futile rotation of the ATPase subunits relative to the rotor during coupled ATP synthesis/hydrolysis. This subunit differs in sequence between fungi, Metazoa (IPR001421 from INTERPRO) and plants (IPR003319 from INTERPRO). More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=52.52 E-value=13 Score=26.33 Aligned_cols=20 Identities=25% Similarity=0.634 Sum_probs=17.1
Q ss_pred cchhhhhhhHHHHHHHHHHH
Q 015708 4 LHQFIWSFSLISLLHYFLRG 23 (402)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (402)
++|+.|+|.+++.++|+...
T Consensus 10 ~Nql~~~f~~l~il~yl~Sk 29 (48)
T PF05933_consen 10 VNQLSFGFLILSILLYLFSK 29 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999998653
No 22
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=39.52 E-value=49 Score=30.34 Aligned_cols=45 Identities=27% Similarity=0.488 Sum_probs=35.7
Q ss_pred CeEEEEEccccC-----------CCCCHHHHHHHHHcC----CCHHHHHHHHHHHHHhCC
Q 015708 338 CEFLIMASDGLW-----------DKVNAQEAVDVVSRN----KSSMESCKNLIDISSSRG 382 (402)
Q Consensus 338 ~d~LILaSDGlw-----------d~ls~~ei~~iv~~~----~~~~~aa~~Lv~~A~~rg 382 (402)
||-++..|.|+| |+|.++..=+.+.++ .-|++.|..|+++-.+||
T Consensus 71 DDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RG 130 (237)
T COG3700 71 DDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred CCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcC
Confidence 477999999998 567777777777553 348899999999999887
No 23
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=34.34 E-value=24 Score=27.26 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=15.4
Q ss_pred cCCCeEEEEEccccCCCCCHH
Q 015708 335 TSDCEFLIMASDGLWDKVNAQ 355 (402)
Q Consensus 335 ~~~~d~LILaSDGlwd~ls~~ 355 (402)
+..++.+++++||+|=-+...
T Consensus 24 ~~~G~Rllva~nGv~lEv~r~ 44 (72)
T PF09436_consen 24 ERPGHRLLVASNGVFLEVRRP 44 (72)
T ss_pred ccCCcEEEEecCcEEEEEech
Confidence 433589999999999655443
No 24
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=20.41 E-value=1.8e+02 Score=17.56 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=16.6
Q ss_pred EEEeCCeEEEEEECCeeEEEE
Q 015708 245 VLLKDSELHVANAGDCRVVLS 265 (402)
Q Consensus 245 ali~~~~l~vanvGDSRa~l~ 265 (402)
++-.++.+||+-.|..|+..+
T Consensus 8 av~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 8 AVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEETTSEEEEEECCCTEEEEE
T ss_pred EEeCCCCEEEEECCCCEEEEC
Confidence 444889999999999888653
Done!